X.sample	X.FusionName	JunctionReadCount	SpanningFragCount	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAF_left	FAF_right	J_FFPM	S_FFPM	annots	clnam	minFAF	maxFAF	sumFFPM	baseFilterPass	gtexcnt	tcgacnt	tcgaNormcnt	cclecnt	tcgaFcnt	pass	BroadID
T98G_CENTRAL_NERVOUS_SYSTEM	SETX--MED27	51	11	SETX	3360	chr9:135224639:-	MED27	45957	chr9:134769379:-	ONLY_REF_SPLICE	YES	16	69	0.79	0.47	0.6448	0.1391	SETX->chr9:135136743-135230372:-,senataxin,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	T98G_CENTRAL_NERVOUS_SYSTEM	0.47	0.79	0.7839	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	47	20	QKI	2336	chr6:163836367:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	80	1	0.46	0.99	0.5942	0.2529	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.46	0.99	0.8471	TRUE	0	0	0	2	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	GNAI1--KPNA7	39	12	GNAI1	2324	chr7:79764594:+	KPNA7	16497	chr7:98805112:-	INCL_NON_REF_SPLICE	YES	123	0	0.29	1	0.4931	0.1517	GNAI1->G_protein_subunit_alpha_i1,chr7:79763271-79848718:+,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	T98G_CENTRAL_NERVOUS_SYSTEM	0.29	1	0.6448	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	FAXC--COQ3	25	10	FAXC	4289	chr6:99781227:-	COQ3	28467	chr6:99819463:-	ONLY_REF_SPLICE	YES	14	27	0.71	0.56	0.3161	0.1264	LOCAL_REARRANGEMENT:-:[19338],FAXC->chr6:99719045-99797938:-,failed_axon_connections_homolog,COQ3->chr6:99817276-99842080:-,coenzyme_Q3,_methyltransferase	T98G_CENTRAL_NERVOUS_SYSTEM	0.56	0.71	0.4425	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	FRA10AC1--PRODH2	20	13	FRA10AC1	11253	chr10:95441237:-	PRODH2	26401	chr19:36298023:-	ONLY_REF_SPLICE	YES	20	0	0.62	1	0.2529	0.1644	FRA10AC1->chr10:95427640-95462329:-,fragile_site,_folic_acid_type,_rare,_fra(10)(q23.3)_or_fra(10)(q24.2)_candidate_1,PRODH2->chr19:36290890-36304201:-,proline_dehydrogenase_2	T98G_CENTRAL_NERVOUS_SYSTEM	0.62	1	0.4173	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	BAHD1--NRG4	20	11	BAHD1	2302	chr15:40733467:+	NRG4	21465	chr15:76303627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2529	0.1391	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,NRG4->chr15:76228310-76352136:-,neuregulin_4	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.392	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	13	21	QKI	2336	chr6:163836367:+	PACRG	43367	chr6:163733811:+	ONLY_REF_SPLICE	YES	80	0	0.3	1	0.1644	0.2655	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.4299	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	EDC3--CYP1A1	12	11	EDC3	7577	chr15:74967302:-	CYP1A1	20870	chr15:75015467:-	ONLY_REF_SPLICE	YES	49	2	0.32	0.92	0.1517	0.1391	LOCAL_REARRANGEMENT:-:[23250],EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,CYP1A1->Oncogene{Bushman},chr15:75011883-75017951:-,cytochrome_P450_family_1_subfamily_A_member_1	T98G_CENTRAL_NERVOUS_SYSTEM	0.32	0.92	0.2908	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	DOCK10--AC016717.1	12	9	DOCK10	1194	chr2:225906969:-	AC016717.1	61828	chr2:226563033:+	INCL_NON_REF_SPLICE	YES	56	0	0.27	1	0.1517	0.1138	DOCK10->chr2:225629807-225907162:-,dedicator_of_cytokinesis_10,AC016717.1->chr2:226562970-226563255:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.27	1	0.2655	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	AC016831.7--CPA5	13	2	AC016831.7	4325	chr7:130600891:+	CPA5	14444	chr7:129999430:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1644	0.0253	AC016831.7->chr7:130538479-130613408:+,CPA5->carboxypeptidase_A5,chr7:129984630-130008571:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1897	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	CTB-113P19.1--FTL	11	9	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1391	0.1138	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	T98G_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.2529	TRUE	0	2	0	13	2	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	EDC3--CYP1A1	10	1	EDC3	7577	chr15:74967302:-	CYP1A1	21655	chr15:75014682:-	ONLY_REF_SPLICE	YES	49	8	0.18	0.58	0.1264	0.0126	LOCAL_REARRANGEMENT:-:[23250],EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,CYP1A1->Oncogene{Bushman},chr15:75011883-75017951:-,cytochrome_P450_family_1_subfamily_A_member_1	T98G_CENTRAL_NERVOUS_SYSTEM	0.18	0.58	0.139	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	EDC3--CYP1A1	7	11	EDC3	7577	chr15:74967302:-	CYP1A1	20873	chr15:75015464:-	ONLY_REF_SPLICE	YES	49	2	0.27	0.9	0.0885	0.1391	LOCAL_REARRANGEMENT:-:[23250],EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,CYP1A1->Oncogene{Bushman},chr15:75011883-75017951:-,cytochrome_P450_family_1_subfamily_A_member_1	T98G_CENTRAL_NERVOUS_SYSTEM	0.27	0.9	0.2276	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	LRRFIP1--RAB17	7	9	LRRFIP1	1165	chr2:238536383:+	RAB17	44051	chr2:238499617:-	ONLY_REF_SPLICE	YES	75	3	0.18	0.84	0.0885	0.1138	LOCAL_INVERSION:+:-:[25962],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,RAB17->RAB17,_member_RAS_oncogene_family,chr2:238482965-238510257:-	T98G_CENTRAL_NERVOUS_SYSTEM	0.18	0.84	0.2023	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	BAHD1--NRG4	6	7	BAHD1	2302	chr15:40733467:+	NRG4	25780	chr15:76261565:-	ONLY_REF_SPLICE	YES	0	10	1	0.57	0.0759	0.0885	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,NRG4->chr15:76228310-76352136:-,neuregulin_4	T98G_CENTRAL_NERVOUS_SYSTEM	0.57	1	0.1644	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	CTB-113P19.1--FTL	4	12	CTB-113P19.1	4742	chr5:151066491:+	FTL	9972	chr19:49468589:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0506	0.1517	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	T98G_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.2023	TRUE	0	2	0	13	2	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	GALK2--SEMA6D	5	4	GALK2	10764	chr15:49509510:+	SEMA6D	36675	chr15:47893062:+	ONLY_REF_SPLICE	YES	32	0	0.22	1	0.0632	0.0506	GALK2->chr15:49447853-49660066:+,galactokinase_2,SEMA6D->chr15:47476298-48066420:+,semaphorin_6D	T98G_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.1138	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	TTYH3--IGFBP5	5	0	TTYH3	14360	chr7:2701882:+	IGFBP5	26666	chr2:217539044:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,IGFBP5->Oncogene{Bushman},chr2:217536828-217560248:-,insulin_like_growth_factor_binding_protein_5	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	BAHD1--NRG4	2	11	BAHD1	2302	chr15:40733467:+	NRG4	19259	chr15:76328332:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0.1391	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,NRG4->chr15:76228310-76352136:-,neuregulin_4	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.1644	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	BAHD1--NRG4	4	3	BAHD1	2302	chr15:40733467:+	NRG4	26876	chr15:76254315:-	ONLY_REF_SPLICE	YES	0	11	1	0.39	0.0506	0.0379	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,NRG4->chr15:76228310-76352136:-,neuregulin_4	T98G_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.0885	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MOSPD2--REPS2	4	1	MOSPD2	1318	chrX:14891880:+	REPS2	33320	chrX:17080561:+	ONLY_REF_SPLICE	YES	56	2	0.08	0.71	0.0506	0.0126	GTEx_FI:{Whole_Blood=[count:4=pct:3.0],Blood=[count:2=pct:1.1]},GTEx_v2:{count=3;pct=0.03%;dist=Whole_Blood=3},{Klijn_CCL:Brain=1},MOSPD2->chrX:14891563-14940449:+,motile_sperm_domain_containing_2,REPS2->Oncogene{Bushman},RALBP1_associated_Eps_domain_containing_2,chrX:16964814-17171395:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.08	0.71	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	FRA10AC1--PRODH2	2	8	FRA10AC1	10133	chr10:95443813:-	PRODH2	26401	chr19:36298023:-	ONLY_REF_SPLICE	YES	30	0	0.25	1	0.0253	0.1011	FRA10AC1->chr10:95427640-95462329:-,fragile_site,_folic_acid_type,_rare,_fra(10)(q23.3)_or_fra(10)(q24.2)_candidate_1,PRODH2->chr19:36290890-36304201:-,proline_dehydrogenase_2	T98G_CENTRAL_NERVOUS_SYSTEM	0.25	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	EDC3--CYP1A1	3	3	EDC3	7577	chr15:74967302:-	CYP1A1	21462	chr15:75014875:-	ONLY_REF_SPLICE	YES	49	6	0.11	0.5	0.0379	0.0379	LOCAL_REARRANGEMENT:-:[23250],EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,CYP1A1->Oncogene{Bushman},chr15:75011883-75017951:-,cytochrome_P450_family_1_subfamily_A_member_1	T98G_CENTRAL_NERVOUS_SYSTEM	0.11	0.5	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	EDC3--CYP1A1	2	1	EDC3	1413	chr15:74988221:-	CYP1A1	20870	chr15:75015467:-	ONLY_REF_SPLICE	NO	57	2	0.05	0.6	0.0253	0.0126	LOCAL_REARRANGEMENT:-:[23250],EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,CYP1A1->Oncogene{Bushman},chr15:75011883-75017951:-,cytochrome_P450_family_1_subfamily_A_member_1	T98G_CENTRAL_NERVOUS_SYSTEM	0.05	0.6	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	40918	chr11:35006117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	2	0	7	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	GNAI1--KPNA7	2	0	GNAI1	2324	chr7:79764594:+	KPNA7	20818	chr7:98790724:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GNAI1->G_protein_subunit_alpha_i1,chr7:79763271-79848718:+,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	PDGFD--DYNC2H1	2	0	PDGFD	1576	chr11:104034532:-	DYNC2H1	100944	chr11:103270391:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},PDGFD->chr11:103777914-104035107:-,platelet_derived_growth_factor_D,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RSRC2--CNOT2	2	0	RSRC2	1153	chr12:123011395:-	CNOT2	30925	chr12:70704675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	RSRC2->arginine/serine-rich_coiled-coil_2,chr12:122989190-123011547:-,CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	GALK2--SEMA6D	1	3	GALK2	10764	chr15:49509510:+	SEMA6D	41689	chr15:48051942:+	ONLY_REF_SPLICE	YES	32	5	0.11	0.44	0.0126	0.0379	GALK2->chr15:49447853-49660066:+,galactokinase_2,SEMA6D->chr15:47476298-48066420:+,semaphorin_6D	T98G_CENTRAL_NERVOUS_SYSTEM	0.11	0.44	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	AC072062.1--AC007405.4	1	1	AC072062.1	2321	chr2:215698829:+	AC007405.4	15576	chr2:171584298:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0126	0.0126	AC072062.1->chr2:215674953-215827998:+,AC007405.4->chr2:171579719-171627276:-	T98G_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	BAHD1--NRG4	1	1	BAHD1	2302	chr15:40733467:+	NRG4	28023	chr15:76251481:-	ONLY_REF_SPLICE	YES	0	17	1	0.11	0.0126	0.0126	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,NRG4->chr15:76228310-76352136:-,neuregulin_4	T98G_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000571
CL34_LARGE_INTESTINE	TRA2A--DNAH11	18	11	TRA2A	3587	chr7:23561326:-	DNAH11	81469	chr7:21882162:+	ONLY_REF_SPLICE	YES	236	0	0.11	1	0.1535	0.0938	{Klijn_CCL:Colo-Rectal=1},TRA2A->chr7:23544399-23571660:-,transformer_2_alpha_homolog,DNAH11->chr7:21582833-21941457:+,dynein_axonemal_heavy_chain_11	CL34_LARGE_INTESTINE	0.11	1	0.2473	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	KIAA1549--RP11-61L23.2	19	4	KIAA1549	14118	chr7:138579088:-	RP11-61L23.2	38881	chr7:143510872:-	ONLY_REF_SPLICE	YES	7	4	0.77	0.85	0.1621	0.0341	KIAA1549->KIAA1549,Oncogene{Bushman},chr7:138516126-138666064:-,RP11-61L23.2->chr7:143339348-143534026:-	CL34_LARGE_INTESTINE	0.77	0.85	0.1962	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	CCDC136--POLR2J2	8	2	CCDC136	16658	chr7:128455985:+	POLR2J2	25785	chr7:102306610:-	ONLY_REF_SPLICE	YES	0	120	1	0.08	0.0682	0.0171	CCDC136->chr7:128430811-128462186:+,coiled-coil_domain_containing_136,POLR2J2->chr7:102277474-102312076:-,chr7:102277496-102312088:-,polymerase_(RNA)_II_subunit_J2	CL34_LARGE_INTESTINE	0.08	1	0.0853	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	PHF14--AMPH	5	2	PHF14	2074	chr7:11014572:+	AMPH	31127	chr7:38574611:-	ONLY_REF_SPLICE	YES	56	0	0.11	1	0.0426	0.0171	PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+,AMPH->amphiphysin,chr7:38423305-38671167:-	CL34_LARGE_INTESTINE	0.11	1	0.0597	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	PRKAR1B--DGKB	5	0	PRKAR1B	6154	chr7:750966:-	DGKB	49337	chr7:14385016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta,DGKB->chr7:14184674-15014402:-,diacylglycerol_kinase_beta	CL34_LARGE_INTESTINE	1	1	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	IGF2BP3--AC017060.1	4	0	IGF2BP3	5880	chr7:23458395:-	AC017060.1	32738	chr7:17523158:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	IGF2BP3->chr7:23349828-23510086:-,insulin_like_growth_factor_2_mRNA_binding_protein_3,AC017060.1->chr7:17503069-17598533:-	CL34_LARGE_INTESTINE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	MACC1--VWC2	2	1	MACC1	4410	chr7:20210337:-	VWC2	26281	chr7:49951630:+	ONLY_REF_SPLICE	NO	40	0	0.07	1	0.0171	0.0085	MACC1->chr7:20174278-20257027:-,metastasis_associated_in_colon_cancer_1,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	CL34_LARGE_INTESTINE	0.07	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	FAM120B--PSMB1	2	0	FAM120B	3590	chr6:170615930:+	PSMB1	23731	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	CL34_LARGE_INTESTINE	1	1	0.0171	TRUE	0	2	0	5	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	SPATA6--AGBL4	2	0	SPATA6	6677	chr1:48877136:-	AGBL4	36830	chr1:49128913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	LOCAL_REARRANGEMENT:-:[60682],SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	CL34_LARGE_INTESTINE	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	MRPS17--ANKMY2	1	2	MRPS17	6177	chr7:55991392:+	ANKMY2	17526	chr7:16666803:-	ONLY_REF_SPLICE	NO	0	57	1	0.05	0.0085	0.0171	MRPS17->chr7:55954970-56022932:+,chr7:56019512-56024192:+,mitochondrial_ribosomal_protein_S17,ANKMY2->ankyrin_repeat_and_MYND_domain_containing_2,chr7:16639401-16685442:-	CL34_LARGE_INTESTINE	0.05	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	MACC1--VWC2	1	1	MACC1	3342	chr7:20224612:-	VWC2	26281	chr7:49951630:+	ONLY_REF_SPLICE	YES	23	0	0.08	1	0.0085	0.0085	MACC1->chr7:20174278-20257027:-,metastasis_associated_in_colon_cancer_1,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	CL34_LARGE_INTESTINE	0.08	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000895
NCIH209_LUNG	SH3BP4--AC093838.4	382	72	SH3BP4	1198	chr2:235860814:+	AC093838.4	34361	chr2:132277670:+	ONLY_REF_SPLICE	YES	32	103	0.93	0.82	3.9465	0.7438	SH3BP4->SH3_domain_binding_protein_4,chr2:235860617-235964358:+,AC093838.4->chr2:132250386-132279146:+	NCIH209_LUNG	0.82	0.93	4.6903	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	CREBBP--SLX4	96	100	CREBBP	3608	chr16:3900298:-	SLX4	52201	chr16:3646394:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.9918	1.0331	{Klijn_CCL:Lung=1},CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,SLX4->SLX4_structure-specific_endonuclease_subunit,chr16:3631182-3661599:-	NCIH209_LUNG	1	1	2.0249	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	MSI2--TRIM37	53	21	MSI2	5660	chr17:55339553:+	TRIM37	58745	chr17:57153075:-	ONLY_REF_SPLICE	YES	251	65	0.23	0.53	0.5475	0.217	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37	NCIH209_LUNG	0.23	0.53	0.7645	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	SAMD1--NCL	35	0	SAMD1	2749	chr19:14200100:-	NCL	12973	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3616	0	SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1,NCL->chr2:232318242-232348352:-,nucleolin	NCIH209_LUNG	1	1	0.3616	TRUE	0	0	0	3	0	TRUE	ACH-000290
NCIH209_LUNG	SCAI--PPP6C	13	15	SCAI	1874	chr9:127904912:-	PPP6C	36866	chr9:127933459:-	ONLY_REF_SPLICE	YES	37	367	0.43	0.07	0.1343	0.155	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:-:[3067],SCAI->chr9:127704887-127905785:-,suppressor_of_cancer_cell_invasion,PPP6C->chr9:127908852-127952218:-,protein_phosphatase_6_catalytic_subunit	NCIH209_LUNG	0.07	0.43	0.2893	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	TRPC4AP--RP11-33I11.2	9	6	TRPC4AP	3504	chr20:33657099:-	RP11-33I11.2	24479	chr8:61721485:-	ONLY_REF_SPLICE	YES	153	0	0.09	1	0.093	0.062	TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,RP11-33I11.2->chr8:61721294-61722165:-	NCIH209_LUNG	0.09	1	0.155	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	CREBBP--SLX4	9	5	CREBBP	3608	chr16:3900298:-	SLX4	55137	chr16:3642866:-	ONLY_REF_SPLICE	YES	0	67	1	0.17	0.093	0.0517	{Klijn_CCL:Lung=1},CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,SLX4->SLX4_structure-specific_endonuclease_subunit,chr16:3631182-3661599:-	NCIH209_LUNG	0.17	1	0.1447	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	CASC9--RP11-300E4.2	8	5	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	22	0	0.37	1	0.0826	0.0517	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH209_LUNG	0.37	1	0.1343	TRUE	0	12	0	10	12	TRUE	ACH-000290
NCIH209_LUNG	ZNF133--CSRP2BP	9	0	ZNF133	1128	chr20:18269248:+	CSRP2BP	16235	chr20:18122852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.093	0	GTEx&tcga_normals:1/3694=0.03%,ZNF133->chr20:18269121-18297640:+,zinc_finger_protein_133,CSRP2BP->Oncogene{Bushman},chr20:18118762-18169031:+	NCIH209_LUNG	1	1	0.093	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	SAMD1--NCL	8	0	SAMD1	2749	chr19:14200100:-	NCL	12093	chr2:232326368:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0826	0	SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1,NCL->chr2:232318242-232348352:-,nucleolin	NCIH209_LUNG	1	1	0.0826	TRUE	0	0	0	3	0	TRUE	ACH-000290
NCIH209_LUNG	TRIM37--MSI2	6	5	TRIM37	24356	chr17:57105776:-	MSI2	36730	chr17:55334459:+	ONLY_REF_SPLICE	YES	97	16	0.1	0.41	0.062	0.0517	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2	NCIH209_LUNG	0.1	0.41	0.1137	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	SCAI--PPP6C	3	15	SCAI	1874	chr9:127904912:-	PPP6C	36045	chr9:127934280:-	ONLY_REF_SPLICE	YES	37	374	0.33	0.05	0.031	0.155	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:-:[3067],SCAI->chr9:127704887-127905785:-,suppressor_of_cancer_cell_invasion,PPP6C->chr9:127908852-127952218:-,protein_phosphatase_6_catalytic_subunit	NCIH209_LUNG	0.05	0.33	0.186	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	CASC9--RP11-300E4.2	4	6	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	28	0	0.26	1	0.0413	0.062	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH209_LUNG	0.26	1	0.1033	TRUE	0	23	0	19	23	TRUE	ACH-000290
NCIH209_LUNG	CREBBP--SLX4	1	12	CREBBP	3608	chr16:3900298:-	SLX4	53990	chr16:3644600:-	ONLY_REF_SPLICE	YES	0	59	1	0.18	0.0103	0.124	{Klijn_CCL:Lung=1},CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,SLX4->SLX4_structure-specific_endonuclease_subunit,chr16:3631182-3661599:-	NCIH209_LUNG	0.18	1	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	RP11-119F19.2--SFTPA2	4	0	RP11-119F19.2	1059	chr10:81526027:-	SFTPA2	9717	chr10:81319754:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	RP11-119F19.2->chr10:81422844-81526085:-,SFTPA2->chr10:81315608-81320153:-,surfactant_protein_A2	NCIH209_LUNG	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	RP11-681L8.1--STPG2	3	0	RP11-681L8.1	1346	chr4:98554629:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH209_LUNG	1	1	0.031	TRUE	0	6	0	6	6	TRUE	ACH-000290
NCIH209_LUNG	SPATA6--GUCA2B	2	2	SPATA6	17065	chr1:48821342:-	GUCA2B	27025	chr1:42620351:+	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0207	0.0207	SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,GUCA2B->chr1:42619092-42621495:+,guanylate_cyclase_activator_2B	NCIH209_LUNG	0.18	1	0.0414	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	ANXA7--SPIRE1	2	0	ANXA7	3333	chr10:75160561:-	SPIRE1	40300	chr18:12453137:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	ANXA7->annexin_A7,chr10:75134859-75173834:-,SPIRE1->chr18:12446511-12658133:-,spire_type_actin_nucleation_factor_1	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	EIF4A3--DSP	2	0	EIF4A3	3994	chr17:78115118:-	DSP	31441	chr6:7578012:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	EIF4A3->chr17:78109013-78120982:-,eukaryotic_translation_initiation_factor_4A3,DSP->chr6:7541808-7586950:+,desmoplakin	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	GOLPH3--SUB1	2	0	GOLPH3	1541	chr5:32173916:-	SUB1	22118	chr5:32599067:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3,SUB1->SUB1_homolog,_transcriptional_regulator,chr5:32531739-32604185:+	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	KHSRP--HMGN2	2	0	KHSRP	9953	chr19:6415152:-	HMGN2	16382	chr1:26800576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	KHSRP->KH-type_splicing_regulatory_protein,chr19:6413359-6424805:-,HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	PRR4--SLC6A15	2	0	PRR4	3708	chr12:11199619:-	SLC6A15	27014	chr12:85286087:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),SLC6A15->chr12:85253492-85307394:-,solute_carrier_family_6_member_15	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	RP11-308B16.2--SLC30A9	2	0	RP11-308B16.2	2223	chr5:12571928:-	SLC30A9	25507	chr4:42088099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	RP11-308B16.2->chr5:12554002-12574749:-,SLC30A9->chr4:41992489-42092474:+,solute_carrier_family_30_member_9	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	TGOLN2--HNRNPA1	2	0	TGOLN2	1509	chr2:85555040:-	HNRNPA1	19778	chr12:54680446:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	TGOLN2->chr2:85545147-85555548:-,trans-golgi_network_protein_2,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	TYMS--ZC3H13	2	0	TYMS	4286	chr18:662320:+	ZC3H13	26487	chr13:46554139:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	USP10--COTL1	2	0	USP10	1134	chr16:84733717:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	7	0	TRUE	ACH-000290
NCIH209_LUNG	USP10--COTL1	2	0	USP10	7066	chr16:84767109:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	5	0	TRUE	ACH-000290
NCIH209_LUNG	ZNF331--NARG2	2	0	ZNF331	2704	chr19:54025938:+	NARG2	46124	chr15:60715961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,NARG2->chr15:60711808-60771359:-	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	SPATA6--GUCA2B	1	2	SPATA6	17017	chr1:48821390:-	GUCA2B	27025	chr1:42620351:+	ONLY_REF_SPLICE	NO	26	0	0.1	1	0.0103	0.0207	SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,GUCA2B->chr1:42619092-42621495:+,guanylate_cyclase_activator_2B	NCIH209_LUNG	0.1	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000290
SUIT2_PANCREAS	TUBA1C--ENDOV	52	3	TUBA1C	7646	chr12:49658967:+	ENDOV	21205	chr17:78396006:+	ONLY_REF_SPLICE	YES	7	2	0.89	0.96	1.0804	0.0623	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,ENDOV->chr17:78388965-78411886:+,endonuclease_V	SUIT2_PANCREAS	0.89	0.96	1.1427	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	HNF4A--R3HDML	17	8	HNF4A	1154	chr20:42984493:+	R3HDML	26068	chr20:42979300:+	ONLY_REF_SPLICE	YES	12	3	0.68	0.89	0.3532	0.1662	LOCAL_REARRANGEMENT:+:[4465],HNF4A->chr20:42984340-43061485:+,hepatocyte_nuclear_factor_4_alpha,R3HDML->R3H_domain_containing_like,chr20:42965626-42979875:+	SUIT2_PANCREAS	0.68	0.89	0.5194	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	HNF4A--R3HDML	12	19	HNF4A	1154	chr20:42984493:+	R3HDML	23819	chr20:42972017:+	ONLY_REF_SPLICE	YES	12	0	0.72	1	0.2493	0.3947	LOCAL_REARRANGEMENT:+:[4465],HNF4A->chr20:42984340-43061485:+,hepatocyte_nuclear_factor_4_alpha,R3HDML->R3H_domain_containing_like,chr20:42965626-42979875:+	SUIT2_PANCREAS	0.72	1	0.644	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	HNF4A--R3HDML	12	15	HNF4A	1154	chr20:42984493:+	R3HDML	24952	chr20:42973903:+	ONLY_REF_SPLICE	YES	12	3	0.69	0.9	0.2493	0.3116	LOCAL_REARRANGEMENT:+:[4465],HNF4A->chr20:42984340-43061485:+,hepatocyte_nuclear_factor_4_alpha,R3HDML->R3H_domain_containing_like,chr20:42965626-42979875:+	SUIT2_PANCREAS	0.69	0.9	0.5609	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	PTGES3--SLC7A5	9	0	PTGES3	1359	chr12:57081801:-	SLC7A5	24761	chr16:87864905:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.187	0	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	SUIT2_PANCREAS	1	1	0.187	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	REV3L--TRERF1	6	0	REV3L	1966	chr6:111803953:-	TRERF1	50979	chr6:42330817:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1247	0	REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SUIT2_PANCREAS	1	1	0.1247	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	ACTB--S100A11	4	0	ACTB	6689	chr7:5567959:-	S100A11	13102	chr1:152006250:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,S100A11->S100_calcium_binding_protein_A11,chr1:152004982-152020383:-	SUIT2_PANCREAS	1	1	0.0831	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	ROCK2--E2F6	3	1	ROCK2	4937	chr2:11426665:-	E2F6	40525	chr2:11597359:-	ONLY_REF_SPLICE	YES	6	8	0.4	0.33	0.0623	0.0208	LOCAL_REARRANGEMENT:-:[96045],ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,E2F6->E2F_transcription_factor_6,Oncogene{Bushman},chr2:11584501-11606297:-	SUIT2_PANCREAS	0.33	0.4	0.0831	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	ALDOA--TAPBP	3	0	ALDOA	7458	chr16:30077230:+	TAPBP	18464	chr6:33273135:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0623	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,TAPBP->TAP_binding_protein_(tapasin),chr6:33267471-33282164:-	SUIT2_PANCREAS	1	1	0.0623	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	CCAT1--CASC8	3	0	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0623	0	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SUIT2_PANCREAS	1	1	0.0623	TRUE	0	7	0	14	6	TRUE	ACH-000652
SUIT2_PANCREAS	FBL--ANP32B	3	0	FBL	2462	chr19:40331090:-	ANP32B	19926	chr9:100777676:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0623	0	FBL->chr19:40325098-40337054:-,fibrillarin,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	SUIT2_PANCREAS	1	1	0.0623	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	GALK2--PLEC	3	0	GALK2	19722	chr15:49584577:+	PLEC	60308	chr8:144994889:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0623	0	GALK2->chr15:49447853-49660066:+,galactokinase_2,PLEC->chr8:144989321-145050902:-,plectin	SUIT2_PANCREAS	1	1	0.0623	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	MARCH7--SSFA2	3	0	MARCH7	4468	chr2:160585686:+	SSFA2	43780	chr2:182794288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0623	0	MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7,SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2	SUIT2_PANCREAS	1	1	0.0623	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	SPTSSA--WDR81	3	0	SPTSSA	2317	chr14:34904455:-	WDR81	10701	chr17:1629565:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0623	0	SPTSSA->chr14:34901995-34931562:-,serine_palmitoyltransferase_small_subunit_A,WDR81->WD_repeat_domain_81,chr17:1619817-1641893:+	SUIT2_PANCREAS	1	1	0.0623	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	TUBA1C--ENDOV	2	3	TUBA1C	7646	chr12:49658967:+	ENDOV	20827	chr17:78395628:+	ONLY_REF_SPLICE	YES	7	2	0.42	0.71	0.0416	0.0623	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,ENDOV->chr17:78388965-78411886:+,endonuclease_V	SUIT2_PANCREAS	0.42	0.71	0.1039	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	CALU--C6orf62	2	0	CALU	3393	chr7:128388858:+	C6orf62	21514	chr6:24706490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	CALU->calumenin,chr7:128379346-128411861:+,C6orf62->chr6:24705089-24721064:-,chromosome_6_open_reading_frame_62	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	DLGAP1-AS1--TGIF1	2	0	DLGAP1-AS1	1509	chr18:3594238:+	TGIF1	19646	chr18:3456352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	DLGAP1-AS1->DLGAP1_antisense_RNA_1,chr18:3593730-3598350:+,TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	DPYD--DR1	2	0	DPYD	4686	chr1:98293670:-	DR1	39426	chr1:93826050:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	FBXW11--NPM1	2	0	FBXW11	1416	chr5:171433462:-	NPM1	29874	chr5:170818309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx_v2:{count=3;pct=0.03%;dist=Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Uterus=1},FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	G3BP1--CDKL3	2	0	G3BP1	1992	chr5:151151597:+	CDKL3	44665	chr5:133541822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	GLG1--DYNC1LI2	2	0	GLG1	11811	chr16:74519694:-	DYNC1LI2	38486	chr16:66776571:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,DYNC1LI2->chr16:66754796-66785701:-,dynein_cytoplasmic_1_light_intermediate_chain_2	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	IP6K1--TACC3	2	0	IP6K1	1189	chr3:49823787:-	TACC3	28123	chr4:1746245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	KHDC1--PTGR1	2	0	KHDC1	2857	chr6:74001721:-	PTGR1	18387	chr9:114348445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	KHDC1->KH_homology_domain_containing_1,chr6:73951037-74020088:-,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	KLC1--CALM2	2	0	KLC1	13440	chr14:104145855:+	CALM2	30157	chr2:47397903:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	MATR3--CTNNA1	2	0	MATR3	9772	chr5:138629494:+	CTNNA1	42412	chr5:138117612:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	2	0	TRUE	ACH-000652
SUIT2_PANCREAS	PDE4D--ZFAND1	2	0	PDE4D	19661	chr5:59064073:-	ZFAND1	62690	chr8:82629523:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,ZFAND1->chr8:82613569-82645138:-,zinc_finger_AN1-type_containing_1	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	RAD23B--SRP14	2	0	RAD23B	8392	chr9:110081160:+	SRP14	20984	chr15:40328701:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+,SRP14->chr15:40327940-40331389:-,signal_recognition_particle_14kDa	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	RNF114--BLMH	2	0	RNF114	2293	chr20:48558248:+	BLMH	23671	chr17:28576186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	RNF114->chr20:48552948-48570429:+,ring_finger_protein_114,BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	RPS6KB1--VMP1	2	0	RPS6KB1	4306	chr17:57987972:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	2	1	6	1	TRUE	ACH-000652
SUIT2_PANCREAS	SDHC--C18orf25	2	0	SDHC	6984	chr1:161310445:+	C18orf25	17761	chr18:43833663:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	SDHC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:161284047-161332984:+,succinate_dehydrogenase_complex_subunit_C,C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	SLC25A37--KAT6A	2	0	SLC25A37	1408	chr8:23386725:+	KAT6A	18643	chr8:41906820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	SLC25A37->chr8:23386318-23432976:+,solute_carrier_family_25_member_37,KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	SUMF2--LARS	2	0	SUMF2	3658	chr7:56140804:+	LARS	28728	chr5:145524272:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
BCPAP_THYROID	AARS--VAC14	76	3	AARS	3957	chr16:70310389:-	VAC14	33503	chr16:70778482:-	ONLY_REF_SPLICE	YES	224	43	0.26	0.65	0.7288	0.0288	AARS->alanyl-tRNA_synthetase,chr16:70286198-70323446:-,VAC14->Oncogene{Bushman},Vac14,_PIKFYVE_complex_component,chr16:70721342-70835064:-	BCPAP_THYROID	0.26	0.65	0.7576	TRUE	0	0	0	1	0	TRUE	ACH-000456
BCPAP_THYROID	EEF2--FN1	23	0	EEF2	5784	chr19:3980684:-	FN1	49268	chr2:216243924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2206	0	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.08%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BCPAP_THYROID	1	1	0.2206	TRUE	0	0	0	1	0	TRUE	ACH-000456
BCPAP_THYROID	EEF2--FN1	9	0	EEF2	6587	chr19:3979881:-	FN1	44407	chr2:216248787:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0863	0	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.08%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BCPAP_THYROID	1	1	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000456
BCPAP_THYROID	PRRG1--LANCL3	3	0	PRRG1	4586	chrX:37285253:+	LANCL3	17056	chrX:37514941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	PRRG1->chrX:37208528-37316548:+,proline_rich_and_Gla_domain_1,LANCL3->LanC_like_3,chrX:37430822-37543716:+	BCPAP_THYROID	1	1	0.0288	TRUE	1	2	0	5	2	TRUE	ACH-000456
BCPAP_THYROID	RCC1--SERINC2	3	0	RCC1	2175	chr1:28834672:+	SERINC2	30138	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	BCPAP_THYROID	1	1	0.0288	TRUE	0	24	0	2	11	TRUE	ACH-000456
BCPAP_THYROID	RP11-307P5.1--SASH1	2	4	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	16	9	0.27	0.4	0.0192	0.0384	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	BCPAP_THYROID	0.27	0.4	0.0576	TRUE	0	0	0	16	0	TRUE	ACH-000456
BCPAP_THYROID	RPS3--RPL22	3	0	RPS3	3900	chr11:75113429:+	RPL22	20119	chr1:6253006:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	BCPAP_THYROID	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000456
BCPAP_THYROID	DANCR--SERINC2	2	1	DANCR	1530	chr4:53579126:+	SERINC2	18554	chr1:31905814:+	ONLY_REF_SPLICE	YES	139	20	0.02	0.13	0.0192	0.0096	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	BCPAP_THYROID	0.02	0.13	0.0288	TRUE	0	9	0	3	2	TRUE	ACH-000456
BCPAP_THYROID	RP11-307P5.1--SASH1	1	4	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	88	9	0.05	0.36	0.0096	0.0384	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	BCPAP_THYROID	0.05	0.36	0.048	TRUE	0	0	0	11	0	TRUE	ACH-000456
BCPAP_THYROID	RP11-307P5.1--SASH1	1	2	RP11-307P5.1	6659	chr6:148268655:+	SASH1	15102	chr6:148761320:+	ONLY_REF_SPLICE	YES	0	44	1	0.06	0.0096	0.0192	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	BCPAP_THYROID	0.06	1	0.0288	TRUE	0	0	0	2	0	TRUE	ACH-000456
HCC366_LUNG	RBM4--CCS	2076	867	RBM4	3939	chr11:66407594:+	CCS	17758	chr11:66366587:+	ONLY_REF_SPLICE	YES	780	177	0.79	0.94	24.0933	10.0621	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.79	0.94	34.1554	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RBM4--CCS	310	993	RBM4	6699	chr11:66411611:+	CCS	17758	chr11:66366587:+	ONLY_REF_SPLICE	YES	428	177	0.75	0.88	3.5977	11.5244	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.75	0.88	15.1221	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RBM4--CCS	11	998	RBM4	7302	chr11:66412214:+	CCS	17758	chr11:66366587:+	ONLY_REF_SPLICE	YES	410	177	0.71	0.85	0.1277	11.5824	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.71	0.85	11.7101	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RBM4--CCS	3	907	RBM4	6587	chr11:66411499:+	CCS	17758	chr11:66366587:+	INCL_NON_REF_SPLICE	YES	414	177	0.69	0.84	0.0348	10.5263	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.69	0.84	10.5611	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RBM4--CCS	5	869	RBM4	6087	chr11:66410999:+	CCS	17758	chr11:66366587:+	ONLY_REF_SPLICE	YES	770	177	0.53	0.83	0.058	10.0853	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.53	0.83	10.1433	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RBM4--CCS	191	42	RBM4	1432	chr11:66384528:+	CCS	17758	chr11:66366587:+	ONLY_REF_SPLICE	YES	330	177	0.41	0.57	2.2167	0.4874	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.41	0.57	2.7041	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RBM4--CCS	5	766	RBM4	3939	chr11:66407594:+	CCS	17766	chr11:66366595:+	INCL_NON_REF_SPLICE	YES	780	152	0.5	0.84	0.058	8.8899	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.5	0.84	8.9479	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	FLOT2--SEZ6	50	51	FLOT2	1154	chr17:27224544:-	SEZ6	19465	chr17:27287991:-	ONLY_REF_SPLICE	YES	137	0	0.42	1	0.5803	0.5919	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[57222],FLOT2->chr17:27206353-27224697:-,flotillin_2,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC366_LUNG	0.42	1	1.1722	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	POU2F1--PLEKHO1	38	1	POU2F1	1130	chr1:167190195:+	PLEKHO1	49160	chr1:150128260:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.441	0.0116	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,PLEKHO1->chr1:150121373-150136916:+,pleckstrin_homology_domain_containing_O1	HCC366_LUNG	0.97	1	0.4526	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	KIF1C--MINK1	21	7	KIF1C	19321	chr17:4928446:+	MINK1	27941	chr17:4781612:+	INCL_NON_REF_SPLICE	YES	13	117	0.68	0.19	0.2437	0.0812	LOCAL_REARRANGEMENT:+:[99887],KIF1C->chr17:4901243-4931696:+,kinesin_family_member_1C,MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1	HCC366_LUNG	0.19	0.68	0.3249	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	HIF1A-AS2--IMPG2	15	6	HIF1A-AS2	1213	chr14:62217603:-	IMPG2	17248	chr3:100972625:-	ONLY_REF_SPLICE	YES	6	0	0.78	1	0.1741	0.0696	HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,IMPG2->chr3:100941390-101039404:-,interphotoreceptor_matrix_proteoglycan_2	HCC366_LUNG	0.78	1	0.2437	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	FLOT2--SEZ6	5	34	FLOT2	1154	chr17:27224544:-	SEZ6	19519	chr17:27287937:-	INCL_NON_REF_SPLICE	YES	137	1	0.22	0.97	0.058	0.3946	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[57222],FLOT2->chr17:27206353-27224697:-,flotillin_2,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC366_LUNG	0.22	0.97	0.4526	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	FTH1--TUBB4B	13	0	FTH1	1217	chr11:61734916:-	TUBB4B	8320	chr9:140135809:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1509	0	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb	HCC366_LUNG	1	1	0.1509	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RP11-34P13.13--ZDHHC11B	7	4	RP11-34P13.13	2242	chr1:172557:-	ZDHHC11B	23604	chr5:745413:-	ONLY_REF_SPLICE	YES	34	1	0.24	0.92	0.0812	0.0464	RP11-34P13.13->chr1:141474-173862:-,ZDHHC11B->chr5:710475-767067:-,zinc_finger_DHHC-type_containing_11B	HCC366_LUNG	0.24	0.92	0.1276	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RP11-1319K7.1--RP11-1415C14.4	5	2	RP11-1319K7.1	9896	chr5:69400244:-	RP11-1415C14.4	22201	chr5:69438272:-	ONLY_REF_SPLICE	YES	10	13	0.41	0.35	0.058	0.0232	LOCAL_REARRANGEMENT:-:[11141],RP11-1319K7.1->chr5:69390202-69424261:-,RP11-1415C14.4->chr5:69435402-69503572:-	HCC366_LUNG	0.35	0.41	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	SETD8--CDK2AP1	5	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.058	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	HCC366_LUNG	1	1	0.058	TRUE	0	0	0	18	0	TRUE	ACH-000840
HCC366_LUNG	SPAG17--C1orf194	4	3	SPAG17	37106	chr1:118537029:-	C1orf194	59384	chr1:109650659:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0464	0.0348	{Klijn_CCL:Lung=1},SPAG17->chr1:118496484-118727846:-,sperm_associated_antigen_17,C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194	HCC366_LUNG	0.64	1	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	PCAT1--RP11-382A18.2	4	2	PCAT1	5528	chr8:128026019:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0464	0.0232	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	HCC366_LUNG	1	1	0.0696	TRUE	0	2	0	1	2	TRUE	ACH-000840
HCC366_LUNG	SLC16A5--AC111186.1	3	4	SLC16A5	6299	chr17:73094276:+	AC111186.1	14182	chr17:73070699:+	INCL_NON_REF_SPLICE	YES	19	0	0.27	1	0.0348	0.0464	LOCAL_REARRANGEMENT:+:[8178],SLC16A5->chr17:73083822-73102257:+,solute_carrier_family_16_member_5,AC111186.1->chr17:73070401-73075644:+	HCC366_LUNG	0.27	1	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	SPAG17--C1orf194	3	1	SPAG17	37106	chr1:118537029:-	C1orf194	60299	chr1:109649744:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0348	0.0116	{Klijn_CCL:Lung=1},SPAG17->chr1:118496484-118727846:-,sperm_associated_antigen_17,C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194	HCC366_LUNG	0.5	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	C2orf61--CALM2	3	0	C2orf61	7327	chr2:47335527:-	CALM2	22283	chr2:47397903:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_REARRANGEMENT:-:[4704],C2orf61->chr2:47272677-47382517:-,chromosome_2_open_reading_frame_61,CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-	HCC366_LUNG	1	1	0.0348	TRUE	0	1	0	4	0	TRUE	ACH-000840
HCC366_LUNG	LGALS3BP--KRT18	3	0	LGALS3BP	4100	chr17:76972120:-	KRT18	11864	chr12:53342905:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	HCC366_LUNG	1	1	0.0348	TRUE	0	0	0	9	0	TRUE	ACH-000840
HCC366_LUNG	POU2F1--PLEKHO1	3	0	POU2F1	1130	chr1:167190195:+	PLEKHO1	53828	chr1:150136392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,PLEKHO1->chr1:150121373-150136916:+,pleckstrin_homology_domain_containing_O1	HCC366_LUNG	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	PSAP--ACTB	3	0	PSAP	6180	chr10:73587772:-	ACTB	22432	chr7:5567682:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx&tcga_normals:19/3694=0.51%,GTEx:0.05%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC366_LUNG	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RCC1--NVL	3	0	RCC1	2175	chr1:28834672:+	NVL	41053	chr1:224455835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx_v2:{count=4;pct=0.05%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=2},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	HCC366_LUNG	1	1	0.0348	TRUE	0	1	0	1	0	TRUE	ACH-000840
HCC366_LUNG	POU2F1--PLEKHO1	2	1	POU2F1	5576	chr1:167288293:+	PLEKHO1	49160	chr1:150128260:+	ONLY_REF_SPLICE	YES	1	1	0.75	0.75	0.0232	0.0116	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,PLEKHO1->chr1:150121373-150136916:+,pleckstrin_homology_domain_containing_O1	HCC366_LUNG	0.75	0.75	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RP11-1319K7.1--RP11-1415C14.4	2	1	RP11-1319K7.1	8728	chr5:69404135:-	RP11-1415C14.4	22201	chr5:69438272:-	ONLY_REF_SPLICE	YES	12	13	0.2	0.19	0.0232	0.0116	LOCAL_REARRANGEMENT:-:[11141],RP11-1319K7.1->chr5:69390202-69424261:-,RP11-1415C14.4->chr5:69435402-69503572:-	HCC366_LUNG	0.19	0.2	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	AFAP1--ABLIM2	2	0	AFAP1	1271	chr4:7941383:-	ABLIM2	58657	chr4:7994654:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	HCC366_LUNG	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000840
HCC366_LUNG	AFAP1--ABLIM2	2	0	AFAP1	1271	chr4:7941383:-	ABLIM2	60984	chr4:7985071:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	HCC366_LUNG	1	1	0.0232	TRUE	0	1	0	3	1	TRUE	ACH-000840
HCC366_LUNG	CEBPG--PEPD	2	0	CEBPG	1566	chr19:33864801:+	PEPD	27769	chr19:33882385:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_v2:{count=2;pct=0.02%;dist=Small_Intestine_-_Terminal_Ileum=1,Lung=1},LOCAL_INVERSION:+:-:[4264],CEBPG->CCAAT/enhancer_binding_protein_gamma,chr19:33864236-33873592:+,PEPD->chr19:33877856-34012700:-,peptidase_D	HCC366_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	ENO1--FLNA	2	0	ENO1	4225	chr1:8931950:-	FLNA	31922	chrX:153582095:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:2/3694=0.05%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,FLNA->chrX:153576892-153603006:-,filamin_A	HCC366_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	G3BP1--TNIP1	2	0	G3BP1	1992	chr5:151151597:+	TNIP1	33969	chr5:150443308:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-	HCC366_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	HIF1A--FOCAD	2	0	HIF1A	1327	chr14:62162557:+	FOCAD	72286	chr9:20976419:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,FOCAD->chr9:20658308-20995954:+,focadhesin	HCC366_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	IFT57--HNRNPD	2	0	IFT57	8220	chr3:107886640:-	HNRNPD	23320	chr4:83278048:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	IFT57->chr3:107879659-107941417:-,intraflagellar_transport_57,HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D	HCC366_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	OTUB1--COX8A	2	0	OTUB1	3602	chr11:63756224:+	COX8A	14254	chr11:63743697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[9310],OTUB1->OTU_deubiquitinase,_ubiquitin_aldehyde_binding_1,chr11:63753325-63769283:+,COX8A->chr11:63742079-63744015:+,cytochrome_c_oxidase_subunit_8A	HCC366_LUNG	1	1	0.0232	TRUE	0	1	0	4	1	TRUE	ACH-000840
HCC366_LUNG	PPFIA3--LIN7B	1	3	PPFIA3	17919	chr19:49649262:+	LIN7B	27206	chr19:49619520:+	ONLY_REF_SPLICE	YES	3	29	0.57	0.12	0.0116	0.0348	LOCAL_REARRANGEMENT:+:[929],PPFIA3->PTPRF_interacting_protein_alpha_3,chr19:49622646-49654283:+,LIN7B->chr19:49617581-49621717:+,lin-7_homolog_B,_crumbs_cell_polarity_complex_component	HCC366_LUNG	0.12	0.57	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000840
LN229_CENTRAL_NERVOUS_SYSTEM	DSN1--SOGA1	75	37	DSN1	3026	chr20:35399276:-	SOGA1	33047	chr20:35423002:-	ONLY_REF_SPLICE	YES	232	113	0.33	0.5	0.7996	0.3945	LOCAL_REARRANGEMENT:-:[3624],DSN1->DSN1_homolog,_MIS12_kinetochore_complex_component,chr20:35380194-35402221:-,SOGA1->chr20:35405845-35492089:-,suppressor_of_glucose,_autophagy_associated_1	LN229_CENTRAL_NERVOUS_SYSTEM	0.33	0.5	1.1941	TRUE	0	0	0	2	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	C16orf70--CBFB	64	30	C16orf70	3466	chr16:67159945:+	CBFB	26625	chr16:67132613:+	ONLY_REF_SPLICE	YES	48	278	0.66	0.25	0.6823	0.3198	{Klijn_CCL:Brain=1,Liver=1},LOCAL_REARRANGEMENT:+:[8900],C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	LN229_CENTRAL_NERVOUS_SYSTEM	0.25	0.66	1.0021	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	DSN1--SOGA1	48	10	DSN1	1157	chr20:35402065:-	SOGA1	33047	chr20:35423002:-	ONLY_REF_SPLICE	YES	57	113	0.5	0.34	0.5117	0.1066	LOCAL_REARRANGEMENT:-:[3624],DSN1->DSN1_homolog,_MIS12_kinetochore_complex_component,chr20:35380194-35402221:-,SOGA1->chr20:35405845-35492089:-,suppressor_of_glucose,_autophagy_associated_1	LN229_CENTRAL_NERVOUS_SYSTEM	0.34	0.5	0.6183	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	CDK12--KIF18B	28	9	CDK12	17299	chr17:37682569:+	KIF18B	43120	chr17:43006392:-	ONLY_REF_SPLICE	YES	37	171	0.5	0.18	0.2985	0.0959	CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12,KIF18B->chr17:43002077-43025082:-,kinesin_family_member_18B	LN229_CENTRAL_NERVOUS_SYSTEM	0.18	0.5	0.3944	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	PYGB--ENTPD6	24	15	PYGB	3534	chr20:25249843:+	ENTPD6	41430	chr20:25205841:+	ONLY_REF_SPLICE	YES	953	211	0.04	0.16	0.2559	0.1599	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[21340],PYGB->chr20:25228705-25278650:+,phosphorylase,_glycogen;_brain,ENTPD6->chr20:25176329-25207365:+,ectonucleoside_triphosphate_diphosphohydrolase_6_(putative)	LN229_CENTRAL_NERVOUS_SYSTEM	0.04	0.16	0.4158	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	PAK1--NEAT1	19	0	PAK1	19665	chr11:77051763:-	NEAT1	36584	chr11:65195790:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2026	0	PAK1->Oncogene{Bushman},chr11:77032752-77185680:-,p21_(RAC1)_activated_kinase_1,NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding)	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.2026	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	EIF4G3--RAB11FIP4	11	7	EIF4G3	6163	chr1:21437816:-	RAB11FIP4	62603	chr17:29844669:+	ONLY_REF_SPLICE	YES	7	0	0.72	1	0.1173	0.0746	EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+	LN229_CENTRAL_NERVOUS_SYSTEM	0.72	1	0.1919	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	DSN1--SOGA1	9	12	DSN1	2474	chr20:35399828:-	SOGA1	33047	chr20:35423002:-	ONLY_REF_SPLICE	YES	221	113	0.09	0.16	0.0959	0.1279	LOCAL_REARRANGEMENT:-:[3624],DSN1->DSN1_homolog,_MIS12_kinetochore_complex_component,chr20:35380194-35402221:-,SOGA1->chr20:35405845-35492089:-,suppressor_of_glucose,_autophagy_associated_1	LN229_CENTRAL_NERVOUS_SYSTEM	0.09	0.16	0.2238	TRUE	0	0	0	2	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	VAC14--HYDIN	10	4	VAC14	1365	chr16:70834700:-	HYDIN	118532	chr16:70874136:-	ONLY_REF_SPLICE	YES	49	0	0.22	1	0.1066	0.0426	LOCAL_REARRANGEMENT:-:[6217],VAC14->Oncogene{Bushman},Vac14,_PIKFYVE_complex_component,chr16:70721342-70835064:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.1492	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	EIF4G3--RAB11FIP4	10	3	EIF4G3	1163	chr1:21503215:-	RAB11FIP4	62603	chr17:29844669:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.1066	0.032	EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+	LN229_CENTRAL_NERVOUS_SYSTEM	0.87	1	0.1386	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RSBN1L--RSBN1L-AS1	7	6	RSBN1L	1613	chr7:77326372:+	RSBN1L-AS1	19755	chr7:77314645:-	ONLY_REF_SPLICE	YES	50	33	0.21	0.28	0.0746	0.064	LOCAL_INVERSION:+:-:[178],RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like,RSBN1L-AS1->chr7:77286977-77325582:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.21	0.28	0.1386	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	DNM3--METTL13	7	3	DNM3	2411	chr1:171890961:+	METTL13	50465	chr1:171783015:+	ONLY_REF_SPLICE	YES	31	0	0.24	1	0.0746	0.032	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:+:[27458],DNM3->chr1:171810621-172387606:+,dynamin_3,METTL13->chr1:171750788-171783163:+,methyltransferase_like_13	LN229_CENTRAL_NERVOUS_SYSTEM	0.24	1	0.1066	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-498C9.2--GAPDH	6	0	RP11-498C9.2	1445	chr17:79801485:+	GAPDH	8196	chr12:6646518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	RP11-498C9.2->chr17:79801041-79801834:+,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.064	TRUE	0	0	0	2	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	NUDT3--BRD2	5	2	NUDT3	1411	chr6:34360041:-	BRD2	20841	chr6:32939372:+	ONLY_REF_SPLICE	YES	81	23	0.08	0.23	0.0533	0.0213	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,BRD2->Oncogene{Bushman},bromodomain_containing_2,chr6:32936437-32949282:+	LN229_CENTRAL_NERVOUS_SYSTEM	0.08	0.23	0.0746	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	OXR1--AP006222.2	4	6	OXR1	4606	chr8:107531367:+	AP006222.2	41708	chr1:228776:-	ONLY_REF_SPLICE	YES	23	0	0.3	1	0.0426	0.064	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,AP006222.2->chr1:227615-267253:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.1066	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	C16orf70--CBFB	1	17	C16orf70	2382	chr16:67154097:+	CBFB	26625	chr16:67132613:+	ONLY_REF_SPLICE	YES	46	278	0.28	0.06	0.0107	0.1812	{Klijn_CCL:Brain=1,Liver=1},LOCAL_REARRANGEMENT:+:[8900],C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	LN229_CENTRAL_NERVOUS_SYSTEM	0.06	0.28	0.1919	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SPAG1--POLR2K	5	1	SPAG1	1213	chr8:101170346:+	POLR2K	26625	chr8:101163575:+	ONLY_REF_SPLICE	YES	4	9	0.6	0.4	0.0533	0.0107	LOCAL_REARRANGEMENT:+:[3904],SPAG1->chr8:101170134-101271506:+,sperm_associated_antigen_1,POLR2K->chr8:101162812-101166230:+,polymerase_(RNA)_II_subunit_K	LN229_CENTRAL_NERVOUS_SYSTEM	0.4	0.6	0.064	TRUE	0	1	0	1	1	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	VDAC1--CTD-2410N18.5	5	1	VDAC1	1487	chr5:133340338:-	CTD-2410N18.5	16152	chr5:133509713:-	ONLY_REF_SPLICE	YES	140	9	0.04	0.4	0.0533	0.0107	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,CTD-2410N18.5->chr5:133502861-133561762:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.04	0.4	0.064	TRUE	0	0	0	6	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SLC9A7--HCCAT5	4	0	SLC9A7	1351	chrX:46618140:-	HCCAT5	23043	chr16:73126980:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	SLC9A7->chrX:46464753-46618490:-,solute_carrier_family_9_member_A7,HCCAT5->chr16:73126248-73127673:+,hepatocellular_carcinoma_associated_transcript_5_(non-protein_coding)	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	EIF4G3--FBXO42	2	2	EIF4G3	7239	chr1:21415631:-	FBXO42	63457	chr1:16580226:-	ONLY_REF_SPLICE	YES	38	27	0.1	0.13	0.0213	0.0213	EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,FBXO42->F-box_protein_42,chr1:16573334-16678949:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.1	0.13	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	ATP2B4--GPR161	2	1	ATP2B4	1659	chr1:203596347:+	GPR161	38778	chr1:168083787:-	ONLY_REF_SPLICE	YES	53	16	0.05	0.16	0.0213	0.0107	ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,GPR161->G_protein-coupled_receptor_161,Oncogene{Bushman},chr1:168053997-168106821:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.05	0.16	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	ATF7--ETV6	2	0	ATF7	1137	chr12:54020063:-	ETV6	37669	chr12:12043875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	GALK1--NME4	2	0	GALK1	5574	chr17:73754115:-	NME4	12124	chr16:448990:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GALK1->chr17:73747675-73761792:-,galactokinase_1,NME4->NME/NM23_nucleoside_diphosphate_kinase_4,chr16:446725-460367:+	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	KDM2A--MMP13	2	0	KDM2A	8041	chr11:66949363:+	MMP13	41132	chr11:102816478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A,MMP13->chr11:102813724-102826463:-,matrix_metallopeptidase_13	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MON1B--CPNE1	2	0	MON1B	1799	chr16:77225530:+	CPNE1	18324	chr20:34220845:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	MON1B->MON1_homolog_B,_secretory_trafficking_associated,chr16:77224732-77236302:+,CPNE1->chr20:34213953-34252878:-,copine_1	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	POLR3H--PMM1	2	0	POLR3H	2952	chr22:41936703:-	PMM1	23915	chr22:41973927:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:-:[32288],POLR3H->chr22:41921808-41940610:-,polymerase_(RNA)_III_subunit_H,PMM1->chr22:41972898-41985894:-,phosphomannomutase_1	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SPARC--ATOX1	2	0	SPARC	4762	chr5:151055693:-	ATOX1	23120	chr5:151131340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:-:[55151],SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SPARC--ATOX1	2	0	SPARC	10781	chr5:151047028:-	ATOX1	23120	chr5:151131340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:-:[55151],SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SRFBP1--CTD-2410N18.5	1	1	SRFBP1	1108	chr5:121297763:+	CTD-2410N18.5	16170	chr5:133509713:-	ONLY_REF_SPLICE	YES	3	9	0.4	0.18	0.0107	0.0107	SRFBP1->chr5:121297656-121411265:+,serum_response_factor_binding_protein_1,CTD-2410N18.5->chr5:133502861-133561762:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.18	0.4	0.0214	TRUE	0	1	0	1	1	TRUE	ACH-000595
NCIH1623_LUNG	SUPT20H--RPLP1	191	37	SUPT20H	25747	chr13:37591382:-	RPLP1	34062	chr15:69745181:+	INCL_NON_REF_SPLICE	YES	37	0	0.86	1	1.5532	0.3009	SUPT20H->SPT20_homolog,_SAGA_complex_component,chr13:37583449-37633850:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	NCIH1623_LUNG	0.86	1	1.8541	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	PPP1R12A--RP1-78O14.1	152	40	PPP1R12A	1766	chr12:80328475:-	RP1-78O14.1	41348	chr12:79787705:-	ONLY_REF_SPLICE	YES	56	0	0.77	1	1.2361	0.3253	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	NCIH1623_LUNG	0.77	1	1.5614	TRUE	0	0	0	2	0	TRUE	ACH-000744
NCIH1623_LUNG	NDUFS1--GPR1	116	29	NDUFS1	3677	chr2:207017143:-	GPR1	34934	chr2:207041999:-	ONLY_REF_SPLICE	YES	92	9	0.61	0.94	0.9433	0.2358	LOCAL_REARRANGEMENT:-:[15713],NDUFS1->NADH:ubiquinone_oxidoreductase_core_subunit_S1,chr2:206979541-207024327:-,GPR1->G_protein-coupled_receptor_1,chr2:207040040-207082771:-	NCIH1623_LUNG	0.61	0.94	1.1791	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	UNC119--PIGS	97	11	UNC119	6727	chr17:26873960:-	PIGS	19849	chr17:26881896:-	INCL_NON_REF_SPLICE	YES	10	88	0.92	0.55	0.7888	0.0895	LOCAL_REARRANGEMENT:-:[715],UNC119->chr17:26873725-26879686:-,unc-119_lipid_binding_chaperone,PIGS->chr17:26880401-26898890:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_S	NCIH1623_LUNG	0.55	0.92	0.8783	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	RBM47--APBB2	78	39	RBM47	3565	chr4:40546439:-	APBB2	46528	chr4:40832594:-	ONLY_REF_SPLICE	YES	105	11	0.53	0.91	0.6343	0.3172	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH1623_LUNG	0.53	0.91	0.9515	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	GNB1--C1orf222	72	27	GNB1	8614	chr1:1747195:-	C1orf222	35633	chr1:1897965:-	ONLY_REF_SPLICE	YES	308	0	0.24	1	0.5855	0.2196	LOCAL_REARRANGEMENT:-:[30901],GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-,C1orf222->chr1:1853396-1935276:-	NCIH1623_LUNG	0.24	1	0.8051	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MYCBP2--N4BP2L2	49	12	MYCBP2	16359	chr13:77825286:-	N4BP2L2	113862	chr13:33018263:-	ONLY_REF_SPLICE	YES	4	7	0.94	0.9	0.3985	0.0976	{Klijn_CCL:Lung=1},MYCBP2->MYC_binding_protein_2,_E3_ubiquitin_protein_ligase,chr13:77618792-77901185:-,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	NCIH1623_LUNG	0.9	0.94	0.4961	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	UBXN7--DLG1	37	9	UBXN7	12632	chr3:196094899:-	DLG1	35559	chr3:196921460:-	ONLY_REF_SPLICE	YES	39	47	0.54	0.49	0.3009	0.0732	{Klijn_CCL:Lung=1},UBXN7->UBX_domain_protein_7,chr3:196074533-196159345:-,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	NCIH1623_LUNG	0.49	0.54	0.3741	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	GRAMD4--GTSE1	31	4	GRAMD4	6846	chr22:47054204:+	GTSE1	27700	chr22:46704047:+	ONLY_REF_SPLICE	YES	12	72	0.74	0.33	0.2521	0.0325	{Klijn_CCL:Breast=1},GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+,GTSE1->G2_and_S-phase_expressed_1,chr22:46692638-46726707:+	NCIH1623_LUNG	0.33	0.74	0.2846	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	CRKL--SNAP29	28	4	CRKL	3286	chr22:21288532:+	SNAP29	14689	chr22:21235337:+	ONLY_REF_SPLICE	YES	58	56	0.36	0.36	0.2277	0.0325	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[26208],CRKL->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:21271714-21308037:+,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog-like,SNAP29->chr22:21213271-21245506:+,synaptosome_associated_protein_29kDa	NCIH1623_LUNG	0.36	0.36	0.2602	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	SRRM2-AS1--TCEB2	27	6	SRRM2-AS1	5671	chr16:2793553:-	TCEB2	16418	chr16:2822103:-	ONLY_REF_SPLICE	YES	1	284	0.97	0.1	0.2196	0.0488	LOCAL_REARRANGEMENT:-:[18814],SRRM2-AS1->SRRM2_antisense_RNA_1,chr16:2787077-2802601:-,TCEB2->chr16:2821415-2827298:-,transcription_elongation_factor_B_subunit_2	NCIH1623_LUNG	0.1	0.97	0.2684	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	SCRN3--HYDIN	20	12	SCRN3	8341	chr2:175274953:+	HYDIN	51889	chr16:71026113:-	ONLY_REF_SPLICE	YES	35	0	0.48	1	0.1626	0.0976	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1623_LUNG	0.48	1	0.2602	TRUE	0	0	0	3	0	TRUE	ACH-000744
NCIH1623_LUNG	LPCAT2--COQ9	19	10	LPCAT2	1355	chr16:55543264:+	COQ9	27172	chr16:57484952:+	ONLY_REF_SPLICE	YES	58	31	0.33	0.48	0.1545	0.0813	LPCAT2->chr16:55542910-55620582:+,lysophosphatidylcholine_acyltransferase_2,COQ9->chr16:57481337-57495187:+,coenzyme_Q9	NCIH1623_LUNG	0.33	0.48	0.2358	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	NDUFS1--GPR1	16	17	NDUFS1	2585	chr2:207018342:-	GPR1	34934	chr2:207041999:-	ONLY_REF_SPLICE	YES	103	9	0.24	0.79	0.1301	0.1382	LOCAL_REARRANGEMENT:-:[15713],NDUFS1->NADH:ubiquinone_oxidoreductase_core_subunit_S1,chr2:206979541-207024327:-,GPR1->G_protein-coupled_receptor_1,chr2:207040040-207082771:-	NCIH1623_LUNG	0.24	0.79	0.2683	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	SCRN3--HYDIN	18	6	SCRN3	8341	chr2:175274953:+	HYDIN	53782	chr16:71022415:-	ONLY_REF_SPLICE	YES	35	1	0.41	0.96	0.1464	0.0488	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1623_LUNG	0.41	0.96	0.1952	TRUE	0	0	0	3	0	TRUE	ACH-000744
NCIH1623_LUNG	NDUFS1--GPR1	16	5	NDUFS1	1263	chr2:207024065:-	GPR1	34934	chr2:207041999:-	ONLY_REF_SPLICE	YES	37	9	0.36	0.7	0.1301	0.0407	LOCAL_REARRANGEMENT:-:[15713],NDUFS1->NADH:ubiquinone_oxidoreductase_core_subunit_S1,chr2:206979541-207024327:-,GPR1->G_protein-coupled_receptor_1,chr2:207040040-207082771:-	NCIH1623_LUNG	0.36	0.7	0.1708	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	VWA8--ARHGEF7	15	1	VWA8	18626	chr13:42361573:-	ARHGEF7	62756	chr13:111857636:+	ONLY_REF_SPLICE	YES	13	16	0.55	0.5	0.122	0.0081	VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8,ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+	NCIH1623_LUNG	0.5	0.55	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	PPP1R12A--RP1-78O14.1	3	38	PPP1R12A	1766	chr12:80328475:-	RP1-78O14.1	41351	chr12:79787702:-	INCL_NON_REF_SPLICE	YES	56	0	0.42	1	0.0244	0.309	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	NCIH1623_LUNG	0.42	1	0.3334	TRUE	0	0	0	2	0	TRUE	ACH-000744
NCIH1623_LUNG	SHANK3--PPP6R2	10	2	SHANK3	20268	chr22:51160865:+	PPP6R2	37643	chr22:50857778:+	ONLY_REF_SPLICE	YES	8	77	0.6	0.13	0.0813	0.0163	{Klijn_CCL:Lung=1},SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	NCIH1623_LUNG	0.13	0.6	0.0976	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	GJB2--RP11-132M7.3	9	3	GJB2	2767	chr13:20763269:-	RP11-132M7.3	10077	chr6:85404628:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0732	0.0244	GJB2->chr13:20761609-20767037:-,gap_junction_protein_beta_2,RP11-132M7.3->chr6:85399143-85419252:+	NCIH1623_LUNG	1	1	0.0976	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	SLC2A1--TSPAN1	9	3	SLC2A1	3563	chr1:43408897:-	TSPAN1	15042	chr1:46646198:+	ONLY_REF_SPLICE	YES	233	1	0.05	0.92	0.0732	0.0244	{Klijn_CCL:Lung=1},SLC2A1->chr1:43391052-43424530:-,solute_carrier_family_2_member_1,TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1	NCIH1623_LUNG	0.05	0.92	0.0976	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	ARNT--CDC42SE1	9	1	ARNT	1226	chr1:150849019:-	CDC42SE1	31000	chr1:151039810:-	ONLY_REF_SPLICE	YES	4	0	0.71	1	0.0732	0.0081	ARNT->Oncogene{Bushman},aryl_hydrocarbon_receptor_nuclear_translocator,chr1:150782181-150849244:-,CDC42SE1->CDC42_small_effector_1,chr1:151023447-151042801:-	NCIH1623_LUNG	0.71	1	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	CSAD--RP11-1136G11.6	9	0	CSAD	8127	chr12:53563856:-	RP11-1136G11.6	19169	chr12:53548112:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0732	0	LOCAL_INVERSION:-:+:[3179],CSAD->chr12:53551447-53575135:-,cysteine_sulfinic_acid_decarboxylase,RP11-1136G11.6->chr12:53547056-53548268:+	NCIH1623_LUNG	1	1	0.0732	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	TARS2--RPRD2	7	7	TARS2	2677	chr1:150461563:+	RPRD2	30616	chr1:150443037:+	ONLY_REF_SPLICE	YES	80	138	0.15	0.09	0.0569	0.0569	LOCAL_REARRANGEMENT:+:[10845],TARS2->chr1:150459887-150480078:+,threonyl-tRNA_synthetase_2,_mitochondrial_(putative),RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2	NCIH1623_LUNG	0.09	0.15	0.1138	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	ARNT--CDC42SE1	8	1	ARNT	1226	chr1:150849019:-	CDC42SE1	32203	chr1:151032249:-	ONLY_REF_SPLICE	YES	4	3	0.69	0.75	0.0651	0.0081	ARNT->Oncogene{Bushman},aryl_hydrocarbon_receptor_nuclear_translocator,chr1:150782181-150849244:-,CDC42SE1->CDC42_small_effector_1,chr1:151023447-151042801:-	NCIH1623_LUNG	0.69	0.75	0.0732	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	SUPT20H--RPLP1	5	13	SUPT20H	24627	chr13:37593479:-	RPLP1	34062	chr15:69745181:+	INCL_NON_REF_SPLICE	YES	37	0	0.33	1	0.0407	0.1057	SUPT20H->SPT20_homolog,_SAGA_complex_component,chr13:37583449-37633850:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	NCIH1623_LUNG	0.33	1	0.1464	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	SCRN3--HYDIN	6	6	SCRN3	8341	chr2:175274953:+	HYDIN	52703	chr16:71025299:-	ONLY_REF_SPLICE	YES	35	0	0.26	1	0.0488	0.0488	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1623_LUNG	0.26	1	0.0976	TRUE	0	0	0	3	0	TRUE	ACH-000744
NCIH1623_LUNG	DDX55--SNRNP35	7	0	DDX55	10363	chr12:124101150:+	SNRNP35	24316	chr12:123955639:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0569	0	DDX55->DEAD-box_helicase_55,chr12:124086624-124105488:+,SNRNP35->chr12:123942188-123957701:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_35	NCIH1623_LUNG	1	1	0.0569	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	RBM47--APBB2	2	19	RBM47	2480	chr4:40631413:-	APBB2	46528	chr4:40832594:-	ONLY_REF_SPLICE	YES	101	11	0.17	0.66	0.0163	0.1545	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH1623_LUNG	0.17	0.66	0.1708	TRUE	0	2	0	1	2	TRUE	ACH-000744
NCIH1623_LUNG	PDLIM5--SMARCAD1	6	1	PDLIM5	6235	chr4:95445026:+	SMARCAD1	45514	chr4:95170805:+	ONLY_REF_SPLICE	YES	31	14	0.18	0.33	0.0488	0.0081	{Klijn_CCL:Lung=1},PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+,SMARCAD1->SWI/SNF-related,_matrix-associated_actin-dependent_regulator_of_chromatin,_subfamily_a,_containing_DEAD/H_box_1,chr4:95128762-95212443:+	NCIH1623_LUNG	0.18	0.33	0.0569	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	PAPL--EIF3K	5	2	PAPL	6474	chr19:39592177:+	EIF3K	13105	chr19:39109786:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.0163	PAPL->chr19:39574553-39602133:+,EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K	NCIH1623_LUNG	1	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	SCEL--FAM194B	5	2	SCEL	5137	chr13:78138034:+	FAM194B	44108	chr13:46142586:-	ONLY_REF_SPLICE	YES	12	0	0.37	1	0.0407	0.0163	SCEL->chr13:78109809-78219398:+,sciellin,FAM194B->chr13:46108657-46189874:-	NCIH1623_LUNG	0.37	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	NBEA--ALOX5AP	5	1	NBEA	35142	chr13:35782991:+	ALOX5AP	70038	chr13:31309688:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0407	0.0081	NBEA->chr13:35516424-36247159:+,neurobeachin,ALOX5AP->arachidonate_5-lipoxygenase_activating_protein,chr13:31309645-31338556:+	NCIH1623_LUNG	0.86	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	DBP--RASIP1	4	0	DBP	7447	chr19:49134249:-	RASIP1	12789	chr19:49242599:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:-:[83149],DBP->D-box_binding_PAR_bZIP_transcription_factor,chr19:49133287-49140695:-,RASIP1->Ras_interacting_protein_1,chr19:49223844-49243978:-	NCIH1623_LUNG	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MYCBP2--N4BP2L2	1	12	MYCBP2	16359	chr13:77825286:-	N4BP2L2	112740	chr13:33020617:-	ONLY_REF_SPLICE	YES	4	8	0.76	0.62	0.0081	0.0976	{Klijn_CCL:Lung=1},MYCBP2->MYC_binding_protein_2,_E3_ubiquitin_protein_ligase,chr13:77618792-77901185:-,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	NCIH1623_LUNG	0.62	0.76	0.1057	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	GJB2--RP11-132M7.3	3	1	GJB2	2767	chr13:20763269:-	RP11-132M7.3	14955	chr6:85418986:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.8	0.0244	0.0081	GJB2->chr13:20761609-20767037:-,gap_junction_protein_beta_2,RP11-132M7.3->chr6:85399143-85419252:+	NCIH1623_LUNG	0.8	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	PDLIM5--SMARCAD1	3	1	PDLIM5	6235	chr4:95445026:+	SMARCAD1	43340	chr4:95162057:+	ONLY_REF_SPLICE	YES	31	21	0.11	0.16	0.0244	0.0081	{Klijn_CCL:Lung=1},PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+,SMARCAD1->SWI/SNF-related,_matrix-associated_actin-dependent_regulator_of_chromatin,_subfamily_a,_containing_DEAD/H_box_1,chr4:95128762-95212443:+	NCIH1623_LUNG	0.11	0.16	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	VWA8--ARHGEF7	3	1	VWA8	17519	chr13:42385361:-	ARHGEF7	62756	chr13:111857636:+	ONLY_REF_SPLICE	YES	11	16	0.27	0.2	0.0244	0.0081	VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8,ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+	NCIH1623_LUNG	0.2	0.27	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	RBM47--APBB2	2	3	RBM47	1413	chr4:40632480:-	APBB2	46528	chr4:40832594:-	ONLY_REF_SPLICE	YES	16	11	0.24	0.31	0.0163	0.0244	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH1623_LUNG	0.24	0.31	0.0407	TRUE	0	2	0	1	2	TRUE	ACH-000744
NCIH1623_LUNG	EYA3--PTAFR	2	1	EYA3	3318	chr1:28374894:-	PTAFR	32185	chr1:28477570:-	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0163	0.0081	LOCAL_REARRANGEMENT:-:[58470],EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,PTAFR->chr1:28473677-28520447:-,platelet_activating_factor_receptor	NCIH1623_LUNG	0.17	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	GRAMD4--GTSE1	2	0	GRAMD4	5725	chr22:47033857:+	GTSE1	27700	chr22:46704047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	{Klijn_CCL:Breast=1},GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+,GTSE1->G2_and_S-phase_expressed_1,chr22:46692638-46726707:+	NCIH1623_LUNG	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	KIF2A--RFC5	2	0	KIF2A	22256	chr5:61677080:+	RFC5	35450	chr12:118456877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	KIF2A->chr5:61601989-61833076:+,kinesin_heavy_chain_member_2A,RFC5->chr12:118451393-118470935:+,replication_factor_C_subunit_5	NCIH1623_LUNG	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	PPP1R12A--RP1-78O14.1	2	0	PPP1R12A	1766	chr12:80328475:-	RP1-78O14.1	43357	chr12:79735189:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	NCIH1623_LUNG	1	1	0.0163	TRUE	0	0	0	2	0	TRUE	ACH-000744
NCIH1623_LUNG	SCEL--FAM194B	2	0	SCEL	5137	chr13:78138034:+	FAM194B	45245	chr13:46137923:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	SCEL->chr13:78109809-78219398:+,sciellin,FAM194B->chr13:46108657-46189874:-	NCIH1623_LUNG	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	UVSSA--MAEA	2	0	UVSSA	1924	chr4:1341977:+	MAEA	26629	chr4:1305767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	NCIH1623_LUNG	1	1	0.0163	TRUE	0	3	0	4	2	TRUE	ACH-000744
NCIH1623_LUNG	SLC39A14--POLR3D	1	3	SLC39A14	1160	chr8:22224921:+	POLR3D	23158	chr8:22102958:+	ONLY_REF_SPLICE	YES	73	1	0.05	0.8	0.0081	0.0244	SLC39A14->chr8:22224762-22291642:+,solute_carrier_family_39_member_14,POLR3D->chr8:22102617-22112113:+,polymerase_(RNA)_III_subunit_D	NCIH1623_LUNG	0.05	0.8	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	SHANK3--PPP6R2	1	2	SHANK3	20268	chr22:51160865:+	PPP6R2	37640	chr22:50857775:+	ONLY_REF_SPLICE	YES	8	81	0.27	0.04	0.0081	0.0163	{Klijn_CCL:Lung=1},SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	NCIH1623_LUNG	0.04	0.27	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MYCBP2--N4BP2L2	1	1	MYCBP2	16359	chr13:77825286:-	N4BP2L2	115440	chr13:33016685:-	ONLY_REF_SPLICE	YES	4	8	0.33	0.2	0.0081	0.0081	{Klijn_CCL:Lung=1},MYCBP2->MYC_binding_protein_2,_E3_ubiquitin_protein_ligase,chr13:77618792-77901185:-,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	NCIH1623_LUNG	0.2	0.33	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000744
JHOM2B_OVARY	TXNDC11--ZC3H7A	724	269	TXNDC11	4847	chr16:11824501:-	ZC3H7A	42680	chr16:11846688:-	ONLY_REF_SPLICE	YES	43	52	0.96	0.95	9.8372	3.655	LOCAL_REARRANGEMENT:-:[7708],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	JHOM2B_OVARY	0.95	0.96	13.4922	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	PTPRK--RSPO3	402	156	PTPRK	1467	chr6:128841404:-	RSPO3	55573	chr6:127469793:+	ONLY_REF_SPLICE	YES	1	0	1	1	5.4621	2.1196	Cosmic{samples=69,mutations=5,papers=2},PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,RSPO3->Oncogene{Bushman},R-spondin_3,chr6:127439749-127518910:+	JHOM2B_OVARY	1	1	7.5817	TRUE	0	6	0	1	6	TRUE	ACH-000333
JHOM2B_OVARY	TXNDC11--ZC3H7A	53	63	TXNDC11	3717	chr16:11827838:-	ZC3H7A	42680	chr16:11846688:-	ONLY_REF_SPLICE	YES	72	52	0.62	0.69	0.7201	0.856	LOCAL_REARRANGEMENT:-:[7708],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	JHOM2B_OVARY	0.62	0.69	1.5761	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	PTPRK--RSPO3	7	156	PTPRK	3807	chr6:128812877:-	RSPO3	55573	chr6:127469793:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.0951	2.1196	Cosmic{samples=69,mutations=5,papers=2},PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,RSPO3->Oncogene{Bushman},R-spondin_3,chr6:127439749-127518910:+	JHOM2B_OVARY	0.99	1	2.2147	TRUE	0	2	0	1	2	TRUE	ACH-000333
JHOM2B_OVARY	BCAR3--ELTD1	21	13	BCAR3	21575	chr1:94041571:-	ELTD1	36185	chr1:79392776:-	ONLY_REF_SPLICE	YES	24	0	0.59	1	0.2853	0.1766	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ELTD1->chr1:79355449-79472403:-	JHOM2B_OVARY	0.59	1	0.4619	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	TXNDC11--ZC3H7A	1	76	TXNDC11	4847	chr16:11824501:-	ZC3H7A	43844	chr16:11845362:-	ONLY_REF_SPLICE	YES	43	187	0.64	0.29	0.0136	1.0326	LOCAL_REARRANGEMENT:-:[7708],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	JHOM2B_OVARY	0.29	0.64	1.0462	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	TXNDC11--ZC3H7A	9	33	TXNDC11	2619	chr16:11829873:-	ZC3H7A	42680	chr16:11846688:-	ONLY_REF_SPLICE	YES	124	52	0.25	0.45	0.1223	0.4484	LOCAL_REARRANGEMENT:-:[7708],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	JHOM2B_OVARY	0.25	0.45	0.5707	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	PTPRK--RSPO3	7	38	PTPRK	1467	chr6:128841404:-	RSPO3	56765	chr6:127471571:+	ONLY_REF_SPLICE	YES	1	87	0.98	0.34	0.0951	0.5163	Cosmic{samples=69,mutations=5,papers=2},PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,RSPO3->Oncogene{Bushman},R-spondin_3,chr6:127439749-127518910:+	JHOM2B_OVARY	0.34	0.98	0.6114	TRUE	0	2	0	1	2	TRUE	ACH-000333
JHOM2B_OVARY	BCAR3--ELTD1	14	7	BCAR3	21575	chr1:94041571:-	ELTD1	37391	chr1:79387471:-	ONLY_REF_SPLICE	YES	24	1	0.47	0.95	0.1902	0.0951	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ELTD1->chr1:79355449-79472403:-	JHOM2B_OVARY	0.47	0.95	0.2853	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	TXNDC11--ZC3H7A	1	22	TXNDC11	3717	chr16:11827838:-	ZC3H7A	43844	chr16:11845362:-	ONLY_REF_SPLICE	YES	72	187	0.24	0.11	0.0136	0.2989	LOCAL_REARRANGEMENT:-:[7708],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	JHOM2B_OVARY	0.11	0.24	0.3125	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	TXNDC11--ZC3H7A	6	0	TXNDC11	1402	chr16:11836333:-	ZC3H7A	42680	chr16:11846688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0815	0	LOCAL_REARRANGEMENT:-:[7708],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	JHOM2B_OVARY	1	1	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	BCAR3--ELTD1	1	6	BCAR3	20459	chr1:94047858:-	ELTD1	36185	chr1:79392776:-	ONLY_REF_SPLICE	NO	42	0	0.14	1	0.0136	0.0815	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ELTD1->chr1:79355449-79472403:-	JHOM2B_OVARY	0.14	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	ADAP1--NOC4L	2	0	ADAP1	9672	chr7:959605:-	NOC4L	25427	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_v2:{count=2;pct=0.02%;dist=Colon_-_Transverse=2},ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	JHOM2B_OVARY	1	1	0.0272	TRUE	0	2	0	3	1	TRUE	ACH-000333
JHOM2B_OVARY	BCAR3--ELTD1	1	4	BCAR3	20459	chr1:94047858:-	ELTD1	37391	chr1:79387471:-	ONLY_REF_SPLICE	NO	42	1	0.11	0.83	0.0136	0.0543	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ELTD1->chr1:79355449-79472403:-	JHOM2B_OVARY	0.11	0.83	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	GPHN--UBE2K	2	0	GPHN	5216	chr14:67147903:+	UBE2K	43058	chr4:39776454:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K	JHOM2B_OVARY	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	GRAMD3--ROCK2	2	0	GRAMD3	2583	chr5:125707259:+	ROCK2	39674	chr2:11359152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GRAMD3->GRAM_domain_containing_3,chr5:125695824-125832186:+,ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-	JHOM2B_OVARY	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000333
HS936T_SKIN	ABR--VPS53	162	82	ABR	3401	chr17:1090094:-	VPS53	65367	chr17:505136:-	ONLY_REF_SPLICE	YES	25	38	0.91	0.87	1.8617	0.9423	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.87	0.91	2.804	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	ABR--VPS53	90	95	ABR	4609	chr17:1082961:-	VPS53	65367	chr17:505136:-	ONLY_REF_SPLICE	YES	38	38	0.83	0.83	1.0343	1.0917	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.83	0.83	2.126	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	ABR--VPS53	6	108	ABR	7895	chr17:1057103:-	VPS53	65367	chr17:505136:-	ONLY_REF_SPLICE	YES	24	38	0.83	0.75	0.069	1.2411	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.75	0.83	1.3101	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	ABR--VPS53	5	108	ABR	7928	chr17:1057070:-	VPS53	65367	chr17:505136:-	INCL_NON_REF_SPLICE	YES	24	38	0.82	0.75	0.0575	1.2411	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.75	0.82	1.2986	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	ABR--VPS53	3	107	ABR	7867	chr17:1057131:-	VPS53	65367	chr17:505136:-	INCL_NON_REF_SPLICE	YES	28	38	0.8	0.74	0.0345	1.2296	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.74	0.8	1.2641	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	ABR--VPS53	1	95	ABR	5752	chr17:1081211:-	VPS53	65367	chr17:505136:-	ONLY_REF_SPLICE	NO	40	38	0.71	0.72	0.0115	1.0917	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.71	0.72	1.1032	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	NIPBL--WDR70	12	9	NIPBL	1420	chr5:36877280:+	WDR70	54689	chr5:37379591:+	ONLY_REF_SPLICE	YES	11	11	0.66	0.66	0.1379	0.1034	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+	HS936T_SKIN	0.66	0.66	0.2413	TRUE	0	2	0	2	1	TRUE	ACH-000801
HS936T_SKIN	ABR--VPS53	7	9	ABR	3029	chr17:1090466:-	VPS53	65367	chr17:505136:-	INCL_NON_REF_SPLICE	YES	41	38	0.28	0.3	0.0804	0.1034	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.28	0.3	0.1838	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	ABR--VPS53	1	26	ABR	4609	chr17:1082961:-	VPS53	69414	chr17:465985:-	ONLY_REF_SPLICE	YES	38	118	0.42	0.19	0.0115	0.2988	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.19	0.42	0.3103	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	NOTCH2NL--SEC22B	4	0	NOTCH2NL	1318	chr1:145209436:+	SEC22B	21447	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.046	0	LOCAL_REARRANGEMENT:+:[92197],NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HS936T_SKIN	1	1	0.046	TRUE	0	1	0	1	0	TRUE	ACH-000801
HS936T_SKIN	ABHD2--AP3S2	2	0	ABHD2	2105	chr15:89631794:+	AP3S2	43418	chr15:90380954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	ABHD2->Oncogene{Bushman},abhydrolase_domain_containing_2,chr15:89630690-89745591:+,AP3S2->adaptor_related_protein_complex_3_sigma_2_subunit,chr15:90373831-90437574:-	HS936T_SKIN	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	GPR110--TNFRSF21	2	0	GPR110	7908	chr6:46988467:-	TNFRSF21	31544	chr6:47252168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	{Klijn_CCL:Stomach=1},GPR110->chr6:46965440-47010099:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	HS936T_SKIN	1	1	0.023	TRUE	0	0	0	2	0	TRUE	ACH-000801
HS936T_SKIN	MREG--CWF19L2	2	0	MREG	4859	chr2:216861029:-	CWF19L2	15676	chr11:107312348:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	MREG->chr2:216809213-216898819:-,melanoregulin,CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-	HS936T_SKIN	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	MTMR12--BEAN1	2	0	MTMR12	1252	chr5:32312864:-	BEAN1	28030	chr16:66471498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	MTMR12->chr5:32227100-32313115:-,myotubularin_related_protein_12,BEAN1->brain_expressed,_associated_with_NEDD4,_1,chr16:66461200-66527432:+	HS936T_SKIN	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	RAB9A--GPM6B	2	0	RAB9A	1164	chrX:13707407:+	GPM6B	14645	chrX:13803927:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	LOCAL_INVERSION:+:-:[60525],RAB9A->RAB9A,_member_RAS_oncogene_family,chrX:13707244-13728625:+,GPM6B->chrX:13789150-13956757:-,glycoprotein_M6B	HS936T_SKIN	1	1	0.023	TRUE	0	2	0	1	0	TRUE	ACH-000801
HS936T_SKIN	SKP1--CTNNA1	2	0	SKP1	1184	chr5:133512546:-	CTNNA1	34546	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	HS936T_SKIN	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	SNHG16--CYGB	2	0	SNHG16	1092	chr17:74553939:+	CYGB	14411	chr17:74527773:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	LOCAL_INVERSION:+:-:[6591],SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,CYGB->chr17:74523438-74547257:-,cytoglobin	HS936T_SKIN	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000801
CAL120_BREAST	EIF3C--NMRAL1	267	98	EIF3C	6289	chr16:28726755:+	NMRAL1	21910	chr16:4531880:-	ONLY_REF_SPLICE	YES	635	0	0.36	1	3.3238	1.22	EIF3C->Oncogene{Bushman},chr16:28699879-28747051:+,eukaryotic_translation_initiation_factor_3_subunit_C,NMRAL1->NmrA-like_family_domain_containing_1,chr16:4511681-4545764:-	CAL120_BREAST	0.36	1	4.5438	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	PAGR1--CDH1	89	35	PAGR1	2329	chr16:29828613:+	CDH1	14392	chr16:68835573:+	ONLY_REF_SPLICE	YES	97	2	0.56	0.98	1.1079	0.4357	PAGR1->PAXIP1_associated_glutamate_rich_protein_1,chr16:29827285-29841948:+,chr16:29827832-29831438:+,CDH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cadherin_1,chr16:68771128-68869451:+	CAL120_BREAST	0.56	0.98	1.5436	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	POMK--HOOK3	70	40	POMK	2141	chr8:42952758:+	HOOK3	33936	chr8:42868194:+	ONLY_REF_SPLICE	YES	123	93	0.47	0.54	0.8714	0.4979	LOCAL_REARRANGEMENT:+:[62976],POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3	CAL120_BREAST	0.47	0.54	1.3693	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	TBC1D31--NUP133	65	27	TBC1D31	9396	chr8:124105982:+	NUP133	47216	chr1:229613507:-	ONLY_REF_SPLICE	YES	53	43	0.63	0.68	0.8092	0.3361	TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+,NUP133->Oncogene{Bushman},chr1:229577045-229644103:-,nucleoporin_133kDa	CAL120_BREAST	0.63	0.68	1.1453	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	FASN--LDHA	47	0	FASN	16505	chr17:80039488:-	LDHA	32493	chr11:18427025:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5851	0	GTEx&tcga_normals:1/3694=0.03%,FASN->chr17:80036214-80056208:-,fatty_acid_synthase,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	CAL120_BREAST	1	1	0.5851	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	QPCTL--MRPL4	41	18	QPCTL	2074	chr19:46196814:+	MRPL4	11466	chr19:10363073:+	ONLY_REF_SPLICE	YES	80	206	0.42	0.22	0.5104	0.2241	{Klijn_CCL:Breast=1},QPCTL->chr19:46195741-46207247:+,glutaminyl-peptide_cyclotransferase-like,MRPL4->chr19:10362577-10370721:+,mitochondrial_ribosomal_protein_L4	CAL120_BREAST	0.22	0.42	0.7345	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CCDC88C--CATSPERB	32	16	CCDC88C	2107	chr14:91883082:-	CATSPERB	71858	chr14:92084080:-	ONLY_REF_SPLICE	YES	15	0	0.76	1	0.3984	0.1992	CCDC88C->chr14:91737667-91884188:-,coiled-coil_domain_containing_88C,CATSPERB->cation_channel_sperm_associated_auxiliary_subunit_beta,chr14:92047040-92247051:-	CAL120_BREAST	0.76	1	0.5976	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	SLC3A2--TAF6L	27	22	SLC3A2	1336	chr11:62623853:+	TAF6L	18452	chr11:62543243:+	ONLY_REF_SPLICE	YES	137	11	0.26	0.82	0.3361	0.2739	LOCAL_REARRANGEMENT:+:[68704],SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,TAF6L->TATA-box_binding_protein_associated_factor_6_like,chr11:62538775-62554814:+	CAL120_BREAST	0.26	0.82	0.61	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	SNED1--DNAH7	28	6	SNED1	1213	chr2:241938467:+	DNAH7	119221	chr2:196621009:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3486	0.0747	{Klijn_CCL:Breast=1},SNED1->chr2:241938255-242034983:+,sushi,_nidogen_and_EGF_like_domains_1,DNAH7->chr2:196602427-196933536:-,dynein_axonemal_heavy_chain_7	CAL120_BREAST	1	1	0.4233	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	PCBP2--CDS2	25	0	PCBP2	21220	chr12:53873447:+	CDS2	47498	chr20:5177872:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3112	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	CAL120_BREAST	1	1	0.3112	TRUE	0	802	86	3	772	TRUE	ACH-000212
CAL120_BREAST	PCBP2--CDS2	21	0	PCBP2	21228	chr12:53873455:+	CDS2	47507	chr20:5177881:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2614	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	CAL120_BREAST	1	1	0.2614	TRUE	0	802	86	3	772	TRUE	ACH-000212
CAL120_BREAST	LRIG3--MDM2	14	23	LRIG3	1523	chr12:59313781:-	MDM2	24502	chr12:69202988:+	ONLY_REF_SPLICE	YES	20	149	0.65	0.2	0.1743	0.2863	{Klijn_CCL:Breast=1},LRIG3->chr12:59265931-59314303:-,leucine-rich_repeats_and_immunoglobulin_like_domains_3,MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+	CAL120_BREAST	0.2	0.65	0.4606	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CPSF6--RP11-426C22.5	13	12	CPSF6	1170	chr12:69633486:+	RP11-426C22.5	24414	chr16:29228802:+	ONLY_REF_SPLICE	YES	93	0	0.21	1	0.1618	0.1494	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RP11-426C22.5->chr16:29127448-29229181:+	CAL120_BREAST	0.21	1	0.3112	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	STK32B--CTD-2081C10.1	14	4	STK32B	7761	chr4:5333120:+	CTD-2081C10.1	28919	chr5:53080974:-	ONLY_REF_SPLICE	YES	3	0	0.86	1	0.1743	0.0498	STK32B->chr4:5053169-5502725:+,serine/threonine_kinase_32B,CTD-2081C10.1->chr5:53072474-53115516:-	CAL120_BREAST	0.86	1	0.2241	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	MFSD7--ARL15	13	3	MFSD7	3910	chr4:680321:-	ARL15	18303	chr5:53182543:-	ONLY_REF_SPLICE	YES	0	29	1	0.36	0.1618	0.0373	MFSD7->chr4:675618-683230:-,major_facilitator_superfamily_domain_containing_7,ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-	CAL120_BREAST	0.36	1	0.1991	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	ATF7--RP11-231C14.5	11	9	ATF7	2534	chr12:53994737:-	RP11-231C14.5	25520	chr16:29493806:+	ONLY_REF_SPLICE	YES	51	0	0.28	1	0.1369	0.112	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,RP11-231C14.5->chr16:29490200-29493912:+	CAL120_BREAST	0.28	1	0.2489	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	PRR14--ANKS3	10	11	PRR14	3692	chr16:30664729:+	ANKS3	20221	chr16:4755254:-	ONLY_REF_SPLICE	YES	67	27	0.24	0.44	0.1245	0.1369	PRR14->chr16:30662038-30667761:+,proline_rich_14,ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-	CAL120_BREAST	0.24	0.44	0.2614	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	EDARADD--CCDC26	10	8	EDARADD	9428	chr1:236631576:+	CCDC26	21822	chr8:130365226:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1245	0.0996	EDARADD->EDAR-associated_death_domain,chr1:236511562-236648214:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	CAL120_BREAST	0.95	1	0.2241	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	ZNRF3--CRYBB1	10	2	ZNRF3	1475	chr22:29280054:+	CRYBB1	23966	chr22:26997985:-	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.1245	0.0249	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,CRYBB1->chr22:26995242-27014052:-,crystallin_beta_B1	CAL120_BREAST	0.75	1	0.1494	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	PCBP2--CDS2	9	0	PCBP2	21225	chr12:53873452:+	CDS2	47503	chr20:5177877:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.112	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	CAL120_BREAST	1	1	0.112	TRUE	0	802	86	3	772	TRUE	ACH-000212
CAL120_BREAST	PCBP2--CDS2	8	0	PCBP2	21228	chr12:53873455:+	CDS2	47508	chr20:5177882:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0996	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	CAL120_BREAST	1	1	0.0996	TRUE	0	802	86	3	772	TRUE	ACH-000212
CAL120_BREAST	CDC73--RP11-372E1.6	5	8	CDC73	11760	chr1:193121574:+	RP11-372E1.6	29397	chr3:142708857:+	ONLY_REF_SPLICE	YES	90	0	0.13	1	0.0622	0.0996	CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+,RP11-372E1.6->chr3:142681796-142720401:+	CAL120_BREAST	0.13	1	0.1618	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CDC73--RP11-372E1.6	6	4	CDC73	11760	chr1:193121574:+	RP11-372E1.6	30970	chr3:142712839:+	ONLY_REF_SPLICE	YES	90	2	0.1	0.83	0.0747	0.0498	CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+,RP11-372E1.6->chr3:142681796-142720401:+	CAL120_BREAST	0.1	0.83	0.1245	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CTC-301O7.4--ANKRD26P1	5	8	CTC-301O7.4	3141	chr19:49834874:-	ANKRD26P1	7575	chr16:46598211:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0622	0.0996	CTC-301O7.4->chr19:49834874-49843865:-,ANKRD26P1->ankyrin_repeat_domain_26_pseudogene_1,chr16:46503253-46603009:-	CAL120_BREAST	1	1	0.1618	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	PCBP2--CDS2	7	0	PCBP2	21229	chr12:53873456:+	CDS2	47506	chr20:5177880:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	CAL120_BREAST	1	1	0.0871	TRUE	0	802	86	3	772	TRUE	ACH-000212
CAL120_BREAST	PRR14--ANKS3	4	9	PRR14	3387	chr16:30664424:+	ANKS3	20221	chr16:4755254:-	ONLY_REF_SPLICE	YES	57	27	0.19	0.33	0.0498	0.112	PRR14->chr16:30662038-30667761:+,proline_rich_14,ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-	CAL120_BREAST	0.19	0.33	0.1618	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	ZNF720--EEF2K	5	2	ZNF720	3917	chr16:31734674:+	EEF2K	21473	chr16:22236975:+	ONLY_REF_SPLICE	YES	22	29	0.24	0.19	0.0622	0.0249	ZNF720->chr16:31724550-31806190:+,zinc_finger_protein_720,EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase	CAL120_BREAST	0.19	0.24	0.0871	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	SRGAP1--DBR1	3	2	SRGAP1	6435	chr12:64410792:+	DBR1	35408	chr3:137893759:-	INCL_NON_REF_SPLICE	YES	38	0	0.12	1	0.0373	0.0249	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,DBR1->chr3:137879854-137893791:-,debranching_RNA_lariats_1	CAL120_BREAST	0.12	1	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CDC42BPA--RP11-381I15.1	2	4	CDC42BPA	6900	chr1:227387258:-	RP11-381I15.1	55782	chr8:132142935:-	ONLY_REF_SPLICE	YES	27	0	0.18	1	0.0249	0.0498	CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-,RP11-381I15.1->chr8:132142635-132157128:-	CAL120_BREAST	0.18	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	PCBP2--CDS2	3	0	PCBP2	21228	chr12:53873455:+	CDS2	47509	chr20:5177883:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	CAL120_BREAST	1	1	0.0373	TRUE	0	802	86	3	772	TRUE	ACH-000212
CAL120_BREAST	CTC-301O7.4--MGRN1	2	3	CTC-301O7.4	3141	chr19:49834874:-	MGRN1	8484	chr16:4700366:+	ONLY_REF_SPLICE	YES	0	31	1	0.14	0.0249	0.0373	CTC-301O7.4->chr19:49834874-49843865:-,MGRN1->chr16:4666494-4740975:+,mahogunin_ring_finger_1	CAL120_BREAST	0.14	1	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CTC-301O7.4--MGRN1	2	1	CTC-301O7.4	2704	chr19:49835311:-	MGRN1	8484	chr16:4700366:+	ONLY_REF_SPLICE	YES	12	31	0.2	0.09	0.0249	0.0124	CTC-301O7.4->chr19:49834874-49843865:-,MGRN1->chr16:4666494-4740975:+,mahogunin_ring_finger_1	CAL120_BREAST	0.09	0.2	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	ZNF536--SLC16A7	2	1	ZNF536	2454	chr19:30775048:+	SLC16A7	24735	chr12:60048933:+	ONLY_REF_SPLICE	YES	0	18	1	0.14	0.0249	0.0124	ZNF536->chr19:30719197-31204445:+,zinc_finger_protein_536,SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7	CAL120_BREAST	0.14	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	ADARB1--UBB	2	0	ADARB1	6441	chr21:46548488:+	UBB	34288	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	CAL120_BREAST	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CDC42BPA--RP11-381I15.1	1	4	CDC42BPA	6900	chr1:227387258:-	RP11-381I15.1	55253	chr8:132143464:-	ONLY_REF_SPLICE	YES	27	0	0.16	1	0.0124	0.0498	CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-,RP11-381I15.1->chr8:132142635-132157128:-	CAL120_BREAST	0.16	1	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CTC-301O7.4--ANKRD26P1	1	4	CTC-301O7.4	2704	chr19:49835311:-	ANKRD26P1	7575	chr16:46598211:-	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0124	0.0498	CTC-301O7.4->chr19:49834874-49843865:-,ANKRD26P1->ankyrin_repeat_domain_26_pseudogene_1,chr16:46503253-46603009:-	CAL120_BREAST	0.29	1	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	MECP2--NSDHL	2	0	MECP2	1152	chrX:153363061:-	NSDHL	27175	chrX:152018809:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,NSDHL->NAD(P)_dependent_steroid_dehydrogenase-like,chrX:151999511-152038273:+	CAL120_BREAST	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	PIEZO2--SLC23A2	2	0	PIEZO2	1064	chr18:11148524:-	SLC23A2	74793	chr20:4893624:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	PIEZO2->chr18:10666480-11148587:-,piezo_type_mechanosensitive_ion_channel_component_2,SLC23A2->chr20:4833002-4990939:-,solute_carrier_family_23_member_2	CAL120_BREAST	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	SHFM1--ACN9	2	0	SHFM1	1204	chr7:96339000:-	ACN9	29383	chr7:96810324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,ACN9->chr7:96745902-96811075:+	CAL120_BREAST	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	TSPAN9--CYHR1	2	0	TSPAN9	3739	chr12:3310422:+	CYHR1	28011	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	TSPAN9->chr12:3186521-3395730:+,tetraspanin_9,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	CAL120_BREAST	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	KCNMB4--MBD6	1	3	KCNMB4	2923	chr12:70794116:+	MBD6	19309	chr12:57921927:+	ONLY_REF_SPLICE	YES	43	19	0.09	0.17	0.0124	0.0373	KCNMB4->chr12:70760056-70828072:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_4,MBD6->chr12:57914493-57923931:+,methyl-CpG_binding_domain_protein_6	CAL120_BREAST	0.09	0.17	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	KCNMB4--MBD6	1	3	KCNMB4	2923	chr12:70794116:+	MBD6	19312	chr12:57921930:+	ONLY_REF_SPLICE	NO	43	18	0.09	0.18	0.0124	0.0373	KCNMB4->chr12:70760056-70828072:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_4,MBD6->chr12:57914493-57923931:+,methyl-CpG_binding_domain_protein_6	CAL120_BREAST	0.09	0.18	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	RGS7--VSTM2B	1	1	RGS7	2460	chr1:241518999:-	VSTM2B	33555	chr19:30054753:+	ONLY_REF_SPLICE	YES	18	0	0.1	1	0.0124	0.0124	RGS7->chr1:240931554-241520530:-,regulator_of_G-protein_signaling_7,VSTM2B->V-set_and_transmembrane_domain_containing_2B,chr19:30017406-30055386:+	CAL120_BREAST	0.1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	ZNF536--SLC16A7	1	1	ZNF536	3543	chr19:30787150:+	SLC16A7	24735	chr12:60048933:+	ONLY_REF_SPLICE	YES	0	18	1	0.1	0.0124	0.0124	ZNF536->chr19:30719197-31204445:+,zinc_finger_protein_536,SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7	CAL120_BREAST	0.1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000212
WM2664_SKIN	ABL2--HIVEP3	3	0	ABL2	1444	chr1:179198376:-	HIVEP3	34759	chr1:42314760:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	2	0	TRUE	ACH-001239
WM2664_SKIN	ATP1A1--MFSD2A	3	0	ATP1A1	21957	chr1:116946538:+	MFSD2A	36422	chr1:40434077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+,MFSD2A->chr1:40420802-40435638:+,major_facilitator_superfamily_domain_containing_2A	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	CKAP5--CEP170P1	3	0	CKAP5	9930	chr11:46829623:-	CEP170P1	48263	chr4:119401579:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5,CEP170P1->centrosomal_protein_170_pseudogene_1,chr4:119388745-119476483:+	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	DNMT3B--GYPC	3	0	DNMT3B	6757	chr20:31375084:+	GYPC	35217	chr2:127453750:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	DNMT3B->DNA_(cytosine-5-)-methyltransferase_3_beta,chr20:31350191-31397162:+,GYPC->chr2:127413509-127454246:+,glycophorin_C_(Gerbich_blood_group)	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	MDM2--PLBD1	3	0	MDM2	6424	chr12:69210725:+	PLBD1	33893	chr12:14656888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,PLBD1->chr12:14656595-14721283:-,phospholipase_B_domain_containing_1	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	MYH10--EIF1	3	0	MYH10	43447	chr17:8379082:-	EIF1	48013	chr17:39845143:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle,EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	PTMS--ITM2B	3	0	PTMS	4182	chr12:6879165:+	ITM2B	11747	chr13:48830443:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	PTMS->chr12:6874682-6880116:+,parathymosin,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	SEPN1--UQCR11	3	0	SEPN1	13220	chr1:26144216:+	UQCR11	21013	chr19:1597776:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	SEPN1->chr1:26126667-26144713:+,selenoprotein_N,_1,UQCR11->chr19:1578338-1605444:-,chr19:1597171-1605480:-,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_XI	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	SH3BP1--CHCHD6	3	0	SH3BP1	13239	chr22:38046651:+	CHCHD6	22906	chr3:126445954:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	SH3BP1->SH3_domain_binding_protein_1,chr22:38030661-38062939:+,CHCHD6->chr3:126423063-126679249:+,coiled-coil-helix-coiled-coil-helix_domain_containing_6	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	UBE4B--CHRM3-AS2	2	4	UBE4B	32845	chr1:10231387:+	CHRM3-AS2	42832	chr1:239877564:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0427	0.0853	UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,CHRM3-AS2->CHRM3_antisense_RNA_2,chr1:239866684-239893765:-	WM2664_SKIN	0.46	1	0.128	TRUE	0	0	0	2	0	TRUE	ACH-001239
WM2664_SKIN	USP36--CLASP1	3	0	USP36	26313	chr17:76792337:-	CLASP1	85383	chr2:122096858:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36,CLASP1->chr2:122095352-122407163:-,cytoplasmic_linker_associated_protein_1	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	WBP2--TGFB1	3	0	WBP2	8240	chr17:73843586:-	TGFB1	13754	chr19:41859109:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	WBP2->WW_domain_binding_protein_2,chr17:73841780-73852588:-,TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	FOXJ3--PIGC	2	2	FOXJ3	11319	chr1:42664773:-	PIGC	25640	chr1:172411970:-	ONLY_REF_SPLICE	YES	4	5	0.5	0.44	0.0427	0.0427	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C	WM2664_SKIN	0.44	0.5	0.0854	TRUE	0	0	0	2	0	TRUE	ACH-001239
WM2664_SKIN	SLC20A1--CHN1	2	1	SLC20A1	1273	chr2:113403706:+	CHN1	29567	chr2:175677210:-	ONLY_REF_SPLICE	NO	27	1	0.1	0.75	0.0427	0.0213	SLC20A1->chr2:113403434-113421404:+,solute_carrier_family_20_member_1,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	WM2664_SKIN	0.1	0.75	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	ADC--RNF19B	2	0	ADC	1405	chr1:33547109:+	RNF19B	19287	chr1:33415375:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	ADC->chr1:33546705-33586131:+,RNF19B->chr1:33402046-33430286:-,ring_finger_protein_19B	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	ATAD1--PFKFB4	2	0	ATAD1	10639	chr10:89527430:-	PFKFB4	29574	chr3:48577204:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	ATAD1->ATPase_family,_AAA_domain_containing_1,chr10:89511269-89601100:-,PFKFB4->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_4,chr3:48555117-48599448:-	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	BUB1B--INO80	2	0	BUB1B	22054	chr15:40509868:+	INO80	52141	chr15:41319934:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	BUB1B->BUB1_mitotic_checkpoint_serine/threonine_kinase_B,Oncogene{Bushman},chr15:40453224-40513337:+,INO80->INO80_complex_subunit,chr15:41271078-41408552:-	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	C1orf63--ZMYM4	2	0	C1orf63	8720	chr1:25594231:-	ZMYM4	31059	chr1:35852604:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	CSPG4--SYAP1	2	0	CSPG4	1181	chr15:76005009:-	SYAP1	19431	chrX:16753350:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	CSPG4->Oncogene{Bushman},chondroitin_sulfate_proteoglycan_4,chr15:75966663-76005189:-,SYAP1->chrX:16737755-16783459:+,synapse_associated_protein_1	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	EMC4--RNF215	2	0	EMC4	3848	chr15:34520047:+	RNF215	17401	chr22:30774131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	EMC4->ER_membrane_protein_complex_subunit_4,chr15:34517200-34522357:+,RNF215->chr22:30773835-30817760:-,ring_finger_protein_215	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	KLHL26--EIF3H	2	0	KLHL26	1173	chr19:18747947:+	EIF3H	24807	chr8:117661165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	KLHL26->chr19:18747775-18781309:+,kelch_like_family_member_26,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	NEK7--RAB4A	2	0	NEK7	16360	chr1:198266370:+	RAB4A	24667	chr1:229422233:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	NEK7->NIMA_related_kinase_7,chr1:198126093-198291550:+,RAB4A->RAB4A,_member_RAS_oncogene_family,chr1:229406822-229441641:+	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	RAB40C--ASB9	2	0	RAB40C	2077	chr16:640433:+	ASB9	20182	chrX:15267057:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,ASB9->ankyrin_repeat_and_SOCS_box_containing_9,chrX:15253410-15288589:-	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	RP11-712B9.2--PRCP	2	0	RP11-712B9.2	3662	chr11:94890967:+	PRCP	32061	chr11:82536164:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	RP11-712B9.2->chr11:94883703-94967268:+,PRCP->chr11:82534544-82681626:-,prolylcarboxypeptidase	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	SLC35E4--RBM39	2	0	SLC35E4	2418	chr22:31033056:+	RBM39	24373	chr20:34317449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	SLC35E4->chr22:31031639-31065003:+,solute_carrier_family_35_member_E4,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	SUMF1--ZMYM2	2	0	SUMF1	8817	chr3:4418014:-	ZMYM2	47807	chr13:20625573:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	TLE4--PTAR1	2	0	TLE4	9501	chr9:82227633:+	PTAR1	38985	chr9:72365866:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	TLE4->chr9:82186688-82341658:+,transducin_like_enhancer_of_split_4,PTAR1->chr9:72324438-72374875:-,protein_prenyltransferase_alpha_subunit_repeat_containing_1	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
BICR22_UPPER_AERODIGESTIVE_TRACT	ZFHX3--AC004158.2	8	0	ZFHX3	3793	chr16:73081651:-	AC004158.2	43012	chr16:72461356:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0784	0	ZFHX3->Oncogene{Bushman},chr16:72816784-73093597:-,zinc_finger_homeobox_3,AC004158.2->chr16:72459384-72698908:-	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	IER2--B2M	2	0	IER2	1138	chr19:13261366:+	B2M	10533	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	IER2->Oncogene{Bushman},chr19:13261229-13265722:+,immediate_early_response_2,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000794
KPNYN_AUTONOMIC_GANGLIA	MAP3K10--C5AR1	115	41	MAP3K10	3151	chr19:40704462:+	C5AR1	20837	chr19:47823038:+	ONLY_REF_SPLICE	YES	15	1	0.91	0.99	1.6912	0.6029	MAP3K10->chr19:40697651-40721482:+,mitogen-activated_protein_kinase_kinase_kinase_10,C5AR1->chr19:47793280-47825323:+,complement_component_5a_receptor_1	KPNYN_AUTONOMIC_GANGLIA	0.91	0.99	2.2941	TRUE	0	0	0	1	0	TRUE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MAP3K10--C5AR1	14	43	MAP3K10	3151	chr19:40704462:+	C5AR1	19722	chr19:47819726:+	ONLY_REF_SPLICE	YES	15	0	0.79	1	0.2059	0.6323	MAP3K10->chr19:40697651-40721482:+,mitogen-activated_protein_kinase_kinase_kinase_10,C5AR1->chr19:47793280-47825323:+,complement_component_5a_receptor_1	KPNYN_AUTONOMIC_GANGLIA	0.79	1	0.8382	TRUE	0	0	0	1	0	TRUE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	AP003900.6--RP11-417J8.3	13	0	AP003900.6	1122	chr21:11169841:+	RP11-417J8.3	9877	chr1:142621001:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1912	0	AP003900.6->chr21:11169720-11184046:+,RP11-417J8.3->chr1:142618769-142729975:+	KPNYN_AUTONOMIC_GANGLIA	1	1	0.1912	TRUE	0	0	0	2	0	TRUE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	AP003900.6--RP11-417J8.3	6	0	AP003900.6	3299	chr21:11174002:+	RP11-417J8.3	9877	chr1:142621001:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0882	0	AP003900.6->chr21:11169720-11184046:+,RP11-417J8.3->chr1:142618769-142729975:+	KPNYN_AUTONOMIC_GANGLIA	1	1	0.0882	TRUE	0	0	0	2	0	TRUE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MAP3K10--C5AR1	2	6	MAP3K10	1970	chr19:40698620:+	C5AR1	20837	chr19:47823038:+	ONLY_REF_SPLICE	YES	46	1	0.15	0.89	0.0294	0.0882	MAP3K10->chr19:40697651-40721482:+,mitogen-activated_protein_kinase_kinase_kinase_10,C5AR1->chr19:47793280-47825323:+,complement_component_5a_receptor_1	KPNYN_AUTONOMIC_GANGLIA	0.15	0.89	0.1176	TRUE	0	0	0	1	0	TRUE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	RP11-657O9.1--ERC1	2	0	RP11-657O9.1	2719	chr3:135098104:-	ERC1	29089	chr12:1345935:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	RP11-657O9.1->chr3:135074909-135158730:-,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	KPNYN_AUTONOMIC_GANGLIA	1	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000227
NCIH661_LUNG	PLD3--BLVRB	76	65	PLD3	9800	chr19:40880527:+	BLVRB	20542	chr19:40957399:-	ONLY_REF_SPLICE	YES	318	197	0.31	0.42	1.0361	0.8861	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:+:-:[67350],PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,BLVRB->biliverdin_reductase_B,chr19:40953696-40971747:-	NCIH661_LUNG	0.31	0.42	1.9222	TRUE	0	1	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	LARS2--KIF15	20	0	LARS2	1175	chr3:45430172:+	KIF15	53578	chr3:44867531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2727	0	LARS2->chr3:45429998-45590913:+,leucyl-tRNA_synthetase_2,_mitochondrial,KIF15->chr3:44803209-44914868:+,kinesin_family_member_15	NCIH661_LUNG	1	1	0.2727	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	JAGN1--ARPC4	16	9	JAGN1	2476	chr3:9934710:+	ARPC4	8487	chr3:9839343:+	INCL_NON_REF_SPLICE	YES	114	32	0.18	0.44	0.2181	0.1227	LOCAL_REARRANGEMENT:+:[82828],JAGN1->chr3:9932238-9936033:+,jagunal_homolog_1,ARPC4->actin_related_protein_2/3_complex_subunit_4,chr3:9834179-9849410:+	NCIH661_LUNG	0.18	0.44	0.3408	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	NDST3--USP53	13	5	NDST3	9423	chr4:119064839:+	USP53	34835	chr4:120166492:+	ONLY_REF_SPLICE	YES	4	30	0.82	0.38	0.1772	0.0682	NDST3->N-deacetylase/N-sulfotransferase_3,chr4:118954773-119179803:+,USP53->chr4:120133742-120216672:+,ubiquitin_specific_peptidase_53	NCIH661_LUNG	0.38	0.82	0.2454	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	PLD3--BLVRB	7	28	PLD3	8660	chr19:40877780:+	BLVRB	20542	chr19:40957399:-	ONLY_REF_SPLICE	YES	339	197	0.09	0.15	0.0954	0.3817	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:+:-:[67350],PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,BLVRB->biliverdin_reductase_B,chr19:40953696-40971747:-	NCIH661_LUNG	0.09	0.15	0.4771	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	ARL15--HMGN3	6	7	ARL15	1151	chr5:53606262:-	HMGN3	14603	chr6:79924739:-	ONLY_REF_SPLICE	YES	9	295	0.59	0.04	0.0818	0.0954	ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,HMGN3->chr6:79910962-79944406:-,high_mobility_group_nucleosomal_binding_domain_3	NCIH661_LUNG	0.04	0.59	0.1772	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	UBR2--RP11-415C15.2	7	2	UBR2	4789	chr6:42562042:+	RP11-415C15.2	57433	chr4:27278487:+	ONLY_REF_SPLICE	YES	28	0	0.24	1	0.0954	0.0273	NUCLCLUST,UBR2->chr6:42531800-42661242:+,ubiquitin_protein_ligase_E3_component_n-recognin_2,RP11-415C15.2->chr4:27219101-27283847:+	NCIH661_LUNG	0.24	1	0.1227	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	PPAP2A--SLC38A9	5	3	PPAP2A	9211	chr5:54721015:-	SLC38A9	18584	chr5:54993820:-	INCL_NON_REF_SPLICE	YES	91	16	0.08	0.33	0.0682	0.0409	LOCAL_REARRANGEMENT:-:[90795],PPAP2A->chr5:54720682-54830878:-,SLC38A9->chr5:54921673-55069022:-,solute_carrier_family_38_member_9	NCIH661_LUNG	0.08	0.33	0.1091	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	LIMS2--SAP130	4	4	LIMS2	9139	chr2:128411998:-	SAP130	41670	chr2:128703133:-	ONLY_REF_SPLICE	YES	23	54	0.26	0.13	0.0545	0.0545	LIMS2->LIM_zinc_finger_domain_containing_2,chr2:128395956-128439360:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	NCIH661_LUNG	0.13	0.26	0.109	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	NDST3--USP53	3	7	NDST3	9423	chr4:119064839:+	USP53	33149	chr4:120160373:+	ONLY_REF_SPLICE	YES	4	26	0.71	0.28	0.0409	0.0954	NDST3->N-deacetylase/N-sulfotransferase_3,chr4:118954773-119179803:+,USP53->chr4:120133742-120216672:+,ubiquitin_specific_peptidase_53	NCIH661_LUNG	0.28	0.71	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	UHRF2--KDM4C	4	3	UHRF2	5854	chr9:6434173:+	KDM4C	45943	chr9:6980925:+	ONLY_REF_SPLICE	YES	11	6	0.39	0.54	0.0545	0.0409	UHRF2->Oncogene{Bushman},chr9:6413151-6507054:+,ubiquitin_like_with_PHD_and_ring_finger_domains_2,KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C	NCIH661_LUNG	0.39	0.54	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	PPAP2A--SLC38A9	3	4	PPAP2A	9253	chr5:54720973:-	SLC38A9	18584	chr5:54993820:-	INCL_NON_REF_SPLICE	YES	102	16	0.06	0.3	0.0409	0.0545	LOCAL_REARRANGEMENT:-:[90795],PPAP2A->chr5:54720682-54830878:-,SLC38A9->chr5:54921673-55069022:-,solute_carrier_family_38_member_9	NCIH661_LUNG	0.06	0.3	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	DDX27--AC007796.1	3	1	DDX27	16825	chr20:47859218:+	AC007796.1	24701	chr19:31908620:+	INCL_NON_REF_SPLICE	YES	89	0	0.04	1	0.0409	0.0136	DDX27->DEAD-box_helicase_27,chr20:47835884-47860614:+,AC007796.1->chr19:31839787-31908700:+	NCIH661_LUNG	0.04	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	CEP135--RP11-725D20.1	3	0	CEP135	13385	chr4:56837574:+	RP11-725D20.1	35970	chr4:60460197:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0409	0	CEP135->centrosomal_protein_135,chr4:56815037-56899529:+,RP11-725D20.1->chr4:60416860-60496042:-	NCIH661_LUNG	1	1	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	COL11A1--IVNS1ABP	3	0	COL11A1	4969	chr1:103540174:-	IVNS1ABP	70014	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0409	0	{Klijn_CCL:Lung=1},COL11A1->Oncogene{Bushman},chr1:103342023-103574052:-,collagen_type_XI_alpha_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH661_LUNG	1	1	0.0409	TRUE	0	0	0	3	0	TRUE	ACH-000853
NCIH661_LUNG	VIM--RPLP2	3	0	VIM	2100	chr10:17271357:+	RPLP2	12525	chr11:809967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	VIM->chr10:17270258-17279592:+,vimentin,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	NCIH661_LUNG	1	1	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	DTNB--KLHL29	2	3	DTNB	14527	chr2:25799707:-	KLHL29	42238	chr2:23785022:+	ONLY_REF_SPLICE	YES	23	1	0.18	0.83	0.0273	0.0409	DTNB->chr2:25600067-25896503:-,dystrobrevin_beta,KLHL29->chr2:23608088-23931481:+,kelch_like_family_member_29	NCIH661_LUNG	0.18	0.83	0.0682	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	DDHD1--KIAA0586	2	1	DDHD1	8217	chr14:53558503:-	KIAA0586	62401	chr14:58979240:+	ONLY_REF_SPLICE	YES	21	17	0.12	0.15	0.0273	0.0136	DDHD1->DDHD_domain_containing_1,chr14:53510686-53620000:-,KIAA0586->KIAA0586,chr14:58894103-59015216:+	NCIH661_LUNG	0.12	0.15	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	RP11-384J4.2--AKAP6	2	1	RP11-384J4.2	7775	chr14:27603244:+	AKAP6	37568	chr14:33204864:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0273	0.0136	RP11-384J4.2->chr14:27305934-27629626:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH661_LUNG	0.75	1	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	AC006486.9--CIC	2	0	AC006486.9	1155	chr19:42759130:-	CIC	16389	chr19:42790923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	GTEx_FI:{Lung=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Lung=1},LOCAL_INVERSION:-:+:[13405],AC006486.9->chr19:42738735-42759284:-,CIC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},capicua_transcriptional_repressor,chr19:42772689-42799949:+	NCIH661_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	HPCA--FGGY	2	0	HPCA	4027	chr1:33359230:+	FGGY	17281	chr1:59805630:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	HPCA->chr1:33351595-33364042:+,hippocalcin,FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+	NCIH661_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	TNIP2--RPL22	2	0	TNIP2	5696	chr4:2746114:-	RPL22	16493	chr1:6257816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	TNIP2->TNFAIP3_interacting_protein_2,chr4:2743375-2758103:-,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	NCIH661_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	WDR45--GGNBP2	2	0	WDR45	1589	chrX:48957520:-	GGNBP2	22884	chr17:34934413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	WDR45->WD_repeat_domain_45,chrX:48929385-48958108:-,GGNBP2->chr17:34900737-34946278:+,gametogenetin_binding_protein_2	NCIH661_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	BTBD9--SSPN	1	2	BTBD9	10076	chr6:38545376:-	SSPN	33582	chr12:26377226:+	ONLY_REF_SPLICE	YES	6	1	0.33	0.75	0.0136	0.0273	BTBD9->BTB_domain_containing_9,chr6:38136227-38607924:-,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	NCIH661_LUNG	0.33	0.75	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	UHRF2--KDM4C	1	1	UHRF2	3249	chr9:6421142:+	KDM4C	45943	chr9:6980925:+	ONLY_REF_SPLICE	YES	19	6	0.1	0.25	0.0136	0.0136	UHRF2->Oncogene{Bushman},chr9:6413151-6507054:+,ubiquitin_like_with_PHD_and_ring_finger_domains_2,KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C	NCIH661_LUNG	0.1	0.25	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH3255_LUNG	PLXNB2--DENND6B	573	16	PLXNB2	1075	chr22:50745982:-	DENND6B	24212	chr22:50757432:-	ONLY_REF_SPLICE	YES	30	21	0.95	0.97	4.6248	0.1291	LOCAL_REARRANGEMENT:-:[1403],PLXNB2->chr22:50713408-50746056:-,plexin_B2,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	NCIH3255_LUNG	0.95	0.97	4.7539	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	EDEM1--ARL8B	145	36	EDEM1	1669	chr3:5229999:+	ARL8B	24923	chr3:5212188:+	ONLY_REF_SPLICE	YES	60	264	0.75	0.41	1.1703	0.2906	LOCAL_REARRANGEMENT:+:[6735],EDEM1->ER_degradation_enhancing_alpha-mannosidase_like_protein_1,chr3:5229331-5261642:+,ARL8B->ADP_ribosylation_factor_like_GTPase_8B,chr3:5163905-5222596:+	NCIH3255_LUNG	0.41	0.75	1.4609	TRUE	0	0	0	2	0	TRUE	ACH-000109
NCIH3255_LUNG	TMEM164--SH3BGRL	113	45	TMEM164	8254	chrX:109414748:+	SH3BGRL	21156	chrX:80532483:+	ONLY_REF_SPLICE	YES	105	4	0.6	0.98	0.912	0.3632	TMEM164->chrX:109245859-109425962:+,transmembrane_protein_164,SH3BGRL->SH3_domain_binding_glutamate_rich_protein_like,chrX:80457442-80554046:+	NCIH3255_LUNG	0.6	0.98	1.2752	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	PLXNB2--DENND6B	76	52	PLXNB2	2191	chr22:50739776:-	DENND6B	24212	chr22:50757432:-	ONLY_REF_SPLICE	YES	85	21	0.6	0.86	0.6134	0.4197	LOCAL_REARRANGEMENT:-:[1403],PLXNB2->chr22:50713408-50746056:-,plexin_B2,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	NCIH3255_LUNG	0.6	0.86	1.0331	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	PHF12--MAPT	63	7	PHF12	1877	chr17:27277913:-	MAPT	44270	chr17:44068826:+	ONLY_REF_SPLICE	YES	11	1	0.86	0.99	0.5085	0.0565	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau	NCIH3255_LUNG	0.86	0.99	0.565	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	SLC25A53--MCTS1	42	5	SLC25A53	1150	chrX:103401559:-	MCTS1	16331	chrX:119739262:+	ONLY_REF_SPLICE	YES	2	535	0.96	0.08	0.339	0.0404	SLC25A53->chrX:103343898-103401708:-,solute_carrier_family_25_member_53,MCTS1->chrX:119727865-119754929:+,malignant_T-cell_amplified_sequence_1	NCIH3255_LUNG	0.08	0.96	0.3794	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	TMEM164--SH3BGRL	24	50	TMEM164	9463	chrX:109416681:+	SH3BGRL	21156	chrX:80532483:+	ONLY_REF_SPLICE	YES	92	4	0.45	0.95	0.1937	0.4036	TMEM164->chrX:109245859-109425962:+,transmembrane_protein_164,SH3BGRL->SH3_domain_binding_glutamate_rich_protein_like,chrX:80457442-80554046:+	NCIH3255_LUNG	0.45	0.95	0.5973	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	DIP2B--PPHLN1	31	11	DIP2B	5613	chr12:51054102:+	PPHLN1	54056	chr12:42729685:+	ONLY_REF_SPLICE	YES	39	24	0.52	0.64	0.2502	0.0888	DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B,PPHLN1->chr12:42632249-42853517:+,periphilin_1	NCIH3255_LUNG	0.52	0.64	0.339	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	PHF12--MAPT	18	9	PHF12	1877	chr17:27277913:-	MAPT	43242	chr17:44067414:+	INCL_NON_REF_SPLICE	YES	11	0	0.71	1	0.1453	0.0726	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau	NCIH3255_LUNG	0.71	1	0.2179	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	PHF12--MAPT	17	11	PHF12	2280	chr17:27277510:-	MAPT	43075	chr17:44067247:+	INCL_NON_REF_SPLICE	YES	15	0	0.65	1	0.1372	0.0888	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau	NCIH3255_LUNG	0.65	1	0.226	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	SLC25A53--MCTS1	15	7	SLC25A53	1150	chrX:103401559:-	MCTS1	12919	chrX:119727939:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1211	0.0565	SLC25A53->chrX:103343898-103401708:-,solute_carrier_family_25_member_53,MCTS1->chrX:119727865-119754929:+,malignant_T-cell_amplified_sequence_1	NCIH3255_LUNG	0.92	1	0.1776	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	GOLIM4--PASD1	14	9	GOLIM4	1877	chr3:167812887:-	PASD1	22248	chrX:150769999:+	ONLY_REF_SPLICE	YES	62	3	0.27	0.88	0.113	0.0726	GOLIM4->chr3:167726465-167813763:-,golgi_integral_membrane_protein_4,PASD1->PAS_domain_containing_1,chrX:150732094-150845211:+	NCIH3255_LUNG	0.27	0.88	0.1856	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	PHF12--MAPT	13	10	PHF12	1877	chr17:27277913:-	MAPT	43173	chr17:44067345:+	INCL_NON_REF_SPLICE	YES	11	1	0.68	0.96	0.1049	0.0807	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau	NCIH3255_LUNG	0.68	0.96	0.1856	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	RGP1--ZCCHC7	9	0	RGP1	8656	chr9:35756858:+	ZCCHC7	21795	chr9:37302185:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0726	0	RGP1->RGP1_homolog,_RAB6A_GEF_complex_partner_1,chr9:35749203-35758572:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	NCIH3255_LUNG	1	1	0.0726	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	RGP1--ZCCHC7	8	2	RGP1	8992	chr9:35757194:+	ZCCHC7	21795	chr9:37302185:+	INCL_NON_REF_SPLICE	YES	36	48	0.22	0.17	0.0646	0.0161	RGP1->RGP1_homolog,_RAB6A_GEF_complex_partner_1,chr9:35749203-35758572:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	NCIH3255_LUNG	0.17	0.22	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	RP11-112J3.16--ZCCHC7	7	1	RP11-112J3.16	1214	chr9:35772373:+	ZCCHC7	16377	chr9:37302185:+	ONLY_REF_SPLICE	YES	1	48	0.89	0.14	0.0565	0.0081	RP11-112J3.16->chr9:35772160-35790429:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	NCIH3255_LUNG	0.14	0.89	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	TMEM164--SH3BGRL	2	21	TMEM164	7153	chrX:109388104:+	SH3BGRL	21156	chrX:80532483:+	ONLY_REF_SPLICE	YES	154	4	0.13	0.85	0.0161	0.1695	TMEM164->chrX:109245859-109425962:+,transmembrane_protein_164,SH3BGRL->SH3_domain_binding_glutamate_rich_protein_like,chrX:80457442-80554046:+	NCIH3255_LUNG	0.13	0.85	0.1856	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	DNAH3--RAI2	4	0	DNAH3	11589	chr16:21136496:-	RAI2	78923	chrX:17855853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	DNAH3->chr16:20944433-21170762:-,dynein_axonemal_heavy_chain_3,RAI2->chrX:17818169-17879457:-,retinoic_acid_induced_2	NCIH3255_LUNG	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	SIPA1L3--ZNF420	4	0	SIPA1L3	1131	chr19:38397998:+	ZNF420	47135	chr19:37618030:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,ZNF420->chr19:37498759-37621216:+,zinc_finger_protein_420	NCIH3255_LUNG	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	FAP--IFIH1	3	0	FAP	3036	chr2:163099418:-	IFIH1	39878	chr2:163150178:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[21928],FAP->chr2:163027194-163101661:-,fibroblast_activation_protein_alpha,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	NCIH3255_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	PLXNB2--DENND6B	1	8	PLXNB2	1075	chr22:50745982:-	DENND6B	25195	chr22:50756449:-	ONLY_REF_SPLICE	YES	30	33	0.23	0.21	0.0081	0.0646	LOCAL_REARRANGEMENT:-:[1403],PLXNB2->chr22:50713408-50746056:-,plexin_B2,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	NCIH3255_LUNG	0.21	0.23	0.0727	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	FRYL--GNAS	2	0	FRYL	1245	chr4:48782095:-	GNAS	98781	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0161	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH3255_LUNG	1	1	0.0161	TRUE	0	1	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	PNISR--TTYH3	2	0	PNISR	5163	chr6:99860427:-	TTYH3	28181	chr7:2691821:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0161	0	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,TTYH3->chr7:2671585-2704436:+,tweety_family_member_3	NCIH3255_LUNG	1	1	0.0161	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	RP11-112J3.16--ZCCHC7	2	0	RP11-112J3.16	1214	chr9:35772373:+	ZCCHC7	17421	chr9:37304185:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0161	0	RP11-112J3.16->chr9:35772160-35790429:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	NCIH3255_LUNG	1	1	0.0161	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	GOLIM4--PASD1	1	2	GOLIM4	1877	chr3:167812887:-	PASD1	25482	chrX:150789402:+	ONLY_REF_SPLICE	YES	62	6	0.05	0.33	0.0081	0.0161	GOLIM4->chr3:167726465-167813763:-,golgi_integral_membrane_protein_4,PASD1->PAS_domain_containing_1,chrX:150732094-150845211:+	NCIH3255_LUNG	0.05	0.33	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000109
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	1022	368	TCF3	13408	chr19:1619110:-	PBX1	46216	chr1:164761731:+	ONLY_REF_SPLICE	YES	405	0	0.77	1	17.0625	6.1439	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	23.2064	TRUE	0	0	0	4	0	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-574K11.29	59	2	TIMM23	6952	chr10:51606988:-	RP11-574K11.29	13578	chr10:75473090:-	INCL_NON_REF_SPLICE	YES	131	3	0.32	0.95	0.985	0.0334	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.29->chr10:75463493-75473339:-	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.95	1.0184	TRUE	1	1	0	6	1	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	2	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	20	0	0.2	1	0.0501	0.0334	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.0835	TRUE	0	3	0	7	3	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CRIM1--PTMA	3	0	CRIM1	11567	chr2:36706662:+	PTMA	31973	chr2:232573237:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	2	2	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	20	0	0.17	1	0.0334	0.0334	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0668	TRUE	0	2	0	11	2	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MSL2--STAG1	2	0	MSL2	3270	chr3:135913814:-	STAG1	20633	chr3:136240259:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	YOSHIHARA_TCGA_num_samples[BRCA:1|OV:1],MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila),STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC16A10--ZHX2	2	0	SLC16A10	1518	chr6:111409298:+	ZHX2	24092	chr8:123875716:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	SLC16A10->chr6:111408781-111552397:+,solute_carrier_family_16_member_10,ZHX2->chr8:123793633-123986750:+,zinc_fingers_and_homeoboxes_2	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	2	CCDC26	3495	chr8:130492889:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0167	0.0334	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	2	CCDC26	3495	chr8:130492889:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	NO	19	0	0.14	1	0.0167	0.0334	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0501	TRUE	0	1	0	1	1	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC019118.2--AC019118.3	1	1	AC019118.2	1732	chr2:3129067:-	AC019118.3	12025	chr2:3135938:-	ONLY_REF_SPLICE	NO	0	55	1	0.04	0.0167	0.0167	LOCAL_REARRANGEMENT:-:[5555],AC019118.2->chr2:2898820-3129798:-,AC019118.3->chr2:3135353-3149551:-	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000728
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LMOD3--ZRSR2	3	0	LMOD3	3866	chr3:69168286:-	ZRSR2	15148	chrX:15822265:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LMOD3->chr3:69156023-69172183:-,leiomodin_3,ZRSR2->chrX:15808595-15841383:+,zinc_finger_CCCH-type,_RNA_binding_motif_and_serine/arginine_rich_2	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCT2--NMT1	2	0	CCT2	2011	chr12:69980124:+	NMT1	18519	chr17:43159012:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+,NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUX1--CDC16	2	0	CUX1	15927	chr7:101758553:+	CDC16	61058	chr13:115004825:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPM7--SNRPN	2	0	TRPM7	1285	chr15:50978728:-	SNRPN	54514	chr15:25207261:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	TRPM7->chr15:50844670-50979012:-,transient_receptor_potential_cation_channel_subfamily_M_member_7,SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000069
SF767_CERVIX	ATF7--CALCOCO1	115	15	ATF7	1137	chr12:54020063:-	CALCOCO1	26784	chr12:54119050:-	ONLY_REF_SPLICE	YES	6	9	0.96	0.94	1.2678	0.1654	LOCAL_REARRANGEMENT:-:[84704],ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,CALCOCO1->calcium_binding_and_coiled-coil_domain_1,chr12:54104903-54121529:-	SF767_CERVIX	0.94	0.96	1.4332	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	FLNB--SLMAP	93	95	FLNB	1457	chr3:57994583:+	SLMAP	87089	chr3:57908616:+	ONLY_REF_SPLICE	YES	81	136	0.7	0.58	1.0252	1.0473	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	SF767_CERVIX	0.58	0.7	2.0725	TRUE	0	1	0	1	1	TRUE	ACH-000490
SF767_CERVIX	FLNB--SLMAP	20	51	FLNB	1457	chr3:57994583:+	SLMAP	89670	chr3:57913023:+	ONLY_REF_SPLICE	YES	81	167	0.47	0.3	0.2205	0.5622	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	SF767_CERVIX	0.3	0.47	0.7827	TRUE	0	1	0	1	1	TRUE	ACH-000490
SF767_CERVIX	TET3--IL4R	23	2	TET3	1454	chr2:74230293:+	IL4R	27932	chr16:27341387:+	ONLY_REF_SPLICE	YES	0	10	1	0.71	0.2536	0.022	TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor	SF767_CERVIX	0.71	1	0.2756	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	GRAMD2--HEXA	22	1	GRAMD2	1055	chr15:72490072:-	HEXA	26163	chr15:72648958:-	ONLY_REF_SPLICE	YES	0	188	1	0.11	0.2425	0.011	GRAMD2->GRAM_domain_containing_2,chr15:72452148-72490126:-,HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha	SF767_CERVIX	0.11	1	0.2535	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	TET3--IL4R	16	2	TET3	1454	chr2:74230293:+	IL4R	30170	chr16:27351507:+	ONLY_REF_SPLICE	YES	0	27	1	0.4	0.1764	0.022	TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor	SF767_CERVIX	0.4	1	0.1984	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	FLNB--SLMAP	1	55	FLNB	1457	chr3:57994583:+	SLMAP	88224	chr3:57911572:+	ONLY_REF_SPLICE	YES	81	160	0.41	0.26	0.011	0.6063	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	SF767_CERVIX	0.26	0.41	0.6173	TRUE	0	1	0	1	1	TRUE	ACH-000490
SF767_CERVIX	TGFA--SBDSP1	10	17	TGFA	3064	chr2:70741991:-	SBDSP1	17268	chr7:72301272:+	ONLY_REF_SPLICE	YES	28	201	0.49	0.12	0.1102	0.1874	TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha,SBDSP1->Shwachman-Bodian-Diamond_syndrome_pseudogene_1,chr7:72300004-72307909:+	SF767_CERVIX	0.12	0.49	0.2976	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	TGFA--SBDSP1	9	16	TGFA	3064	chr2:70741991:-	SBDSP1	17327	chr7:72301331:+	INCL_NON_REF_SPLICE	YES	28	207	0.47	0.11	0.0992	0.1764	TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha,SBDSP1->Shwachman-Bodian-Diamond_syndrome_pseudogene_1,chr7:72300004-72307909:+	SF767_CERVIX	0.11	0.47	0.2756	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	ATF7--CALCOCO1	9	15	ATF7	1465	chr12:54019735:-	CALCOCO1	26784	chr12:54119050:-	ONLY_REF_SPLICE	YES	12	9	0.67	0.73	0.0992	0.1654	LOCAL_REARRANGEMENT:-:[84704],ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,CALCOCO1->calcium_binding_and_coiled-coil_domain_1,chr12:54104903-54121529:-	SF767_CERVIX	0.67	0.73	0.2646	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	RP11-711M9.1--IL4R	1	40	RP11-711M9.1	1181	chr2:74213833:+	IL4R	9578	chr16:27341387:+	ONLY_REF_SPLICE	YES	0	10	1	0.8	0.011	0.441	RP11-711M9.1->chr2:74213653-74220867:+,IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor	SF767_CERVIX	0.8	1	0.452	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	RP11-711M9.1--IL4R	3	31	RP11-711M9.1	1181	chr2:74213833:+	IL4R	11816	chr16:27351507:+	ONLY_REF_SPLICE	YES	0	27	1	0.56	0.0331	0.3417	RP11-711M9.1->chr2:74213653-74220867:+,IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor	SF767_CERVIX	0.56	1	0.3748	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	KIAA0100--FAM222B	7	9	KIAA0100	11378	chr17:26961535:-	FAM222B	35327	chr17:27093725:-	ONLY_REF_SPLICE	YES	107	24	0.13	0.4	0.0772	0.0992	KIAA0100->KIAA0100,chr17:26941458-26972472:-,FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B	SF767_CERVIX	0.13	0.4	0.1764	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	TGFA--SBDSP1	5	14	TGFA	3064	chr2:70741991:-	SBDSP1	18178	chr7:72302182:+	ONLY_REF_SPLICE	YES	28	224	0.4	0.08	0.0551	0.1543	TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha,SBDSP1->Shwachman-Bodian-Diamond_syndrome_pseudogene_1,chr7:72300004-72307909:+	SF767_CERVIX	0.08	0.4	0.2094	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	GON4L--ARHGEF2	8	1	GON4L	3780	chr1:155823067:-	ARHGEF2	49694	chr1:155959142:-	ONLY_REF_SPLICE	YES	18	1	0.33	0.9	0.0882	0.011	LOCAL_REARRANGEMENT:-:[87439],GON4L->chr1:155719508-155829191:-,gon-4_like,ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-	SF767_CERVIX	0.33	0.9	0.0992	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	KIAA0100--FAM222B	3	9	KIAA0100	11378	chr17:26961535:-	FAM222B	32780	chr17:27117443:-	ONLY_REF_SPLICE	YES	107	21	0.1	0.36	0.0331	0.0992	KIAA0100->KIAA0100,chr17:26941458-26972472:-,FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B	SF767_CERVIX	0.1	0.36	0.1323	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	VDAC2--RPL26	5	0	VDAC2	1790	chr10:76970701:+	RPL26	15068	chr17:8286512:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	VDAC2->chr10:76969912-76991206:+,voltage_dependent_anion_channel_2,RPL26->Oncogene{Bushman},chr17:8280838-8286531:-,ribosomal_protein_L26	SF767_CERVIX	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	EIF4G3--ECE1	2	5	EIF4G3	6163	chr1:21437816:-	ECE1	78007	chr1:21548335:-	ONLY_REF_SPLICE	YES	5	157	0.58	0.04	0.022	0.0551	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1],LOCAL_REARRANGEMENT:-:[40363],EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,ECE1->chr1:21543740-21671997:-,endothelin_converting_enzyme_1	SF767_CERVIX	0.04	0.58	0.0771	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	AHNAK--SMC4	2	0	AHNAK	5883	chr11:62302475:-	SMC4	44348	chr3:160138528:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4	SF767_CERVIX	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	DAD1--TNPO3	2	0	DAD1	1239	chr14:23057937:-	TNPO3	10464	chr7:128658211:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	DAD1->chr14:23033805-23058175:-,defender_against_cell_death_1,TNPO3->chr7:128594948-128695198:-,transportin_3	SF767_CERVIX	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	HECTD1--NAA38	2	0	HECTD1	9983	chr14:31641067:-	NAA38	53517	chr7:117831966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,NAA38->N(alpha)-acetyltransferase_38,_NatC_auxiliary_subunit,chr7:117824086-117832878:+	SF767_CERVIX	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	RBMX--KRT4	2	0	RBMX	1168	chrX:135962756:-	KRT4	16341	chr12:53207900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RBMX->RNA_binding_motif_protein,_X-linked,chrX:135930163-135962923:-,KRT4->chr12:53200333-53208335:-,keratin_4	SF767_CERVIX	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	TET2--PPA2	2	0	TET2	2105	chr4:106068136:+	PPA2	31604	chr4:106377902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[89261],TET2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:106067032-106200973:+,tet_methylcytosine_dioxygenase_2,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	SF767_CERVIX	1	1	0.022	TRUE	0	3	0	2	1	TRUE	ACH-000490
SF767_CERVIX	USP32--APPBP2	2	0	USP32	3790	chr17:58469243:-	APPBP2	53938	chr17:58543820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],LOCAL_REARRANGEMENT:-:[20689],USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-	SF767_CERVIX	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	SERINC5--CTC-431G16.2	1	2	SERINC5	3166	chr5:79498705:-	CTC-431G16.2	25243	chr5:79099714:-	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.011	0.022	SERINC5->chr5:79407050-79551898:-,serine_incorporator_5,CTC-431G16.2->chr5:79070171-79112013:-	SF767_CERVIX	0.27	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000490
SU8686_PANCREAS	PAK4--LEUTX	166	105	PAK4	6338	chr19:39660397:+	LEUTX	21269	chr19:40275167:+	ONLY_REF_SPLICE	YES	418	0	0.39	1	1.9628	1.2415	{Klijn_CCL:Pancreas=1},PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,LEUTX->chr19:40267235-40276775:+,leucine_twenty_homeobox	SU8686_PANCREAS	0.39	1	3.2043	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	RHPN2--CPNE8	106	40	RHPN2	2221	chr19:33535155:-	CPNE8	45125	chr12:39071356:-	ONLY_REF_SPLICE	YES	113	52	0.56	0.74	1.2533	0.473	{Klijn_CCL:Pancreas=1},RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,CPNE8->chr12:39040624-39301232:-,copine_8	SU8686_PANCREAS	0.56	0.74	1.7263	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MRPS10--DIP2B	111	0	MRPS10	1064	chr6:42185540:-	DIP2B	17509	chr12:51068257:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.3125	0	MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10,DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B	SU8686_PANCREAS	1	1	1.3125	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	FOCAD--CDKN2B-AS1	69	84	FOCAD	11757	chr9:20765072:+	CDKN2B-AS1	76156	chr9:22077678:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.8158	0.9932	FOCAD->chr9:20658308-20995954:+,focadhesin,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	SU8686_PANCREAS	1	1	1.809	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	ZNF461--CLIP3	62	20	ZNF461	5143	chr19:37147350:-	CLIP3	20335	chr19:36510208:-	ONLY_REF_SPLICE	YES	26	14	0.76	0.85	0.7331	0.2365	ZNF461->chr19:37128094-37157755:-,zinc_finger_protein_461,CLIP3->CAP-Gly_domain_containing_linker_protein_3,chr19:36505562-36524245:-	SU8686_PANCREAS	0.76	0.85	0.9696	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	FOCAD--CDKN2B-AS1	36	71	FOCAD	11757	chr9:20765072:+	CDKN2B-AS1	77369	chr9:22092307:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4257	0.8395	FOCAD->chr9:20658308-20995954:+,focadhesin,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	SU8686_PANCREAS	1	1	1.2652	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	44	26	TEAD4	1711	chr12:3069206:+	AMN1	20374	chr12:31862359:-	ONLY_REF_SPLICE	YES	37	29	0.65	0.71	0.5203	0.3074	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.65	0.71	0.8277	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	FOCAD--CDKN2B-AS1	38	48	FOCAD	11757	chr9:20765072:+	CDKN2B-AS1	78531	chr9:22096371:+	ONLY_REF_SPLICE	YES	0	5	1	0.95	0.4493	0.5675	FOCAD->chr9:20658308-20995954:+,focadhesin,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	SU8686_PANCREAS	0.95	1	1.0168	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	EGLN2--C12orf60	38	29	EGLN2	3420	chr19:41307320:+	C12orf60	19705	chr12:15056941:+	ONLY_REF_SPLICE	YES	882	4	0.07	0.94	0.4493	0.3429	EGLN2->chr19:41304901-41314338:+,egl-9_family_hypoxia_inducible_factor_2,C12orf60->chr12:14956506-15059520:+,chromosome_12_open_reading_frame_60	SU8686_PANCREAS	0.07	0.94	0.7922	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	FOCAD--CDKN2B-AS1	26	19	FOCAD	11757	chr9:20765072:+	CDKN2B-AS1	80524	chr9:22112319:+	ONLY_REF_SPLICE	YES	0	21	1	0.68	0.3074	0.2247	FOCAD->chr9:20658308-20995954:+,focadhesin,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	SU8686_PANCREAS	0.68	1	0.5321	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	18	14	TEAD4	1711	chr12:3069206:+	AMN1	22230	chr12:31854941:-	ONLY_REF_SPLICE	YES	37	72	0.46	0.31	0.2128	0.1655	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.31	0.46	0.3783	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	NR1H2--CYP2A7	18	1	NR1H2	2218	chr19:50841333:+	CYP2A7	21216	chr19:41382492:-	INCL_NON_REF_SPLICE	YES	0	2	1	0.9	0.2128	0.0118	NR1H2->chr19:50832910-50886239:+,nuclear_receptor_subfamily_1_group_H_member_2,CYP2A7->chr19:41381344-41388657:-,cytochrome_P450_family_2_subfamily_A_member_7	SU8686_PANCREAS	0.9	1	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	EGLN2--C12orf60	9	32	EGLN2	8555	chr19:41313179:+	C12orf60	19705	chr12:15056941:+	ONLY_REF_SPLICE	YES	752	4	0.05	0.91	0.1064	0.3784	EGLN2->chr19:41304901-41314338:+,egl-9_family_hypoxia_inducible_factor_2,C12orf60->chr12:14956506-15059520:+,chromosome_12_open_reading_frame_60	SU8686_PANCREAS	0.05	0.91	0.4848	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	EGLN2--C12orf60	7	33	EGLN2	8555	chr19:41313179:+	C12orf60	17490	chr12:15052103:+	ONLY_REF_SPLICE	YES	752	3	0.05	0.93	0.0828	0.3902	EGLN2->chr19:41304901-41314338:+,egl-9_family_hypoxia_inducible_factor_2,C12orf60->chr12:14956506-15059520:+,chromosome_12_open_reading_frame_60	SU8686_PANCREAS	0.05	0.93	0.473	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	PAK4--FCGBP	15	1	PAK4	8431	chr19:39664650:+	FCGBP	34168	chr19:40402471:-	ONLY_REF_SPLICE	YES	328	13	0.05	0.55	0.1774	0.0118	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,FCGBP->Fc_fragment_of_IgG_binding_protein,chr19:40353963-40440533:-	SU8686_PANCREAS	0.05	0.55	0.1892	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	8	28	TEAD4	1711	chr12:3069206:+	AMN1	18863	chr12:31867885:-	ONLY_REF_SPLICE	YES	37	26	0.49	0.58	0.0946	0.3311	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.49	0.58	0.4257	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	FOCAD--CDKN2B-AS1	9	23	FOCAD	11757	chr9:20765072:+	CDKN2B-AS1	79417	chr9:22097257:+	ONLY_REF_SPLICE	YES	0	21	1	0.6	0.1064	0.2719	FOCAD->chr9:20658308-20995954:+,focadhesin,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	SU8686_PANCREAS	0.6	1	0.3783	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	KIF21A--ASUN	12	3	KIF21A	1464	chr12:39836729:-	ASUN	43519	chr12:27089747:-	ONLY_REF_SPLICE	YES	13	104	0.54	0.13	0.1419	0.0355	KIF21A->chr12:39687030-39837192:-,kinesin_family_member_21A,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	SU8686_PANCREAS	0.13	0.54	0.1774	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	RGP1--ACO1	12	0	RGP1	8656	chr9:35756858:+	ACO1	18981	chr9:32418126:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1419	0	RGP1->RGP1_homolog,_RAB6A_GEF_complex_partner_1,chr9:35749203-35758572:+,ACO1->aconitase_1,chr9:32384618-32454767:+	SU8686_PANCREAS	1	1	0.1419	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	RGP1--ACO1	10	1	RGP1	8992	chr9:35757194:+	ACO1	18981	chr9:32418126:+	INCL_NON_REF_SPLICE	YES	16	25	0.41	0.31	0.1182	0.0118	RGP1->RGP1_homolog,_RAB6A_GEF_complex_partner_1,chr9:35749203-35758572:+,ACO1->aconitase_1,chr9:32384618-32454767:+	SU8686_PANCREAS	0.31	0.41	0.13	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	3	28	TEAD4	1711	chr12:3069206:+	AMN1	19183	chr12:31867565:-	ONLY_REF_SPLICE	YES	37	26	0.46	0.54	0.0355	0.3311	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.46	0.54	0.3666	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	1	30	TEAD4	2024	chr12:3069519:+	AMN1	20374	chr12:31862359:-	ONLY_REF_SPLICE	NO	36	29	0.46	0.52	0.0118	0.3547	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.46	0.52	0.3665	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	EGLN2--C12orf60	1	29	EGLN2	7955	chr19:41312579:+	C12orf60	19705	chr12:15056941:+	ONLY_REF_SPLICE	YES	736	4	0.04	0.88	0.0118	0.3429	EGLN2->chr19:41304901-41314338:+,egl-9_family_hypoxia_inducible_factor_2,C12orf60->chr12:14956506-15059520:+,chromosome_12_open_reading_frame_60	SU8686_PANCREAS	0.04	0.88	0.3547	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	1	26	TEAD4	1867	chr12:3069362:+	AMN1	20374	chr12:31862359:-	ONLY_REF_SPLICE	YES	35	29	0.44	0.48	0.0118	0.3074	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.44	0.48	0.3192	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	NR1H2--CYP2A7	7	0	NR1H2	2218	chr19:50841333:+	CYP2A7	21929	chr19:41381779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0828	0	NR1H2->chr19:50832910-50886239:+,nuclear_receptor_subfamily_1_group_H_member_2,CYP2A7->chr19:41381344-41388657:-,cytochrome_P450_family_2_subfamily_A_member_7	SU8686_PANCREAS	1	1	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	PPFIBP1--ABCC9	6	3	PPFIBP1	1935	chr12:27677298:+	ABCC9	42417	chr12:22093759:-	ONLY_REF_SPLICE	YES	54	0	0.14	1	0.0709	0.0355	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,ABCC9->ATP_binding_cassette_subfamily_C_member_9,chr12:21950335-22094336:-	SU8686_PANCREAS	0.14	1	0.1064	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	ETNK1--RP11-125O5.2	4	7	ETNK1	3386	chr12:22796956:+	RP11-125O5.2	26268	chr12:21279052:+	ONLY_REF_SPLICE	YES	150	0	0.07	1	0.0473	0.0828	ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,RP11-125O5.2->chr12:21200113-21329829:+	SU8686_PANCREAS	0.07	1	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	ZNF473--SPTBN4	2	15	ZNF473	1409	chr19:50529379:+	SPTBN4	20772	chr19:40995982:+	ONLY_REF_SPLICE	YES	56	2	0.23	0.89	0.0236	0.1774	ZNF473->chr19:50528971-50556671:+,zinc_finger_protein_473,SPTBN4->chr19:40972148-41082370:+,spectrin_beta,_non-erythrocytic_4	SU8686_PANCREAS	0.23	0.89	0.201	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	KIF21A--ASUN	5	2	KIF21A	1464	chr12:39836729:-	ASUN	45981	chr12:27081838:-	ONLY_REF_SPLICE	YES	13	56	0.35	0.11	0.0591	0.0236	KIF21A->chr12:39687030-39837192:-,kinesin_family_member_21A,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	SU8686_PANCREAS	0.11	0.35	0.0827	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	RHPN2--CPNE8	1	18	RHPN2	2221	chr19:33535155:-	CPNE8	47479	chr12:39064604:-	ONLY_REF_SPLICE	YES	113	74	0.14	0.2	0.0118	0.2128	{Klijn_CCL:Pancreas=1},RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,CPNE8->chr12:39040624-39301232:-,copine_8	SU8686_PANCREAS	0.14	0.2	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	1	16	TEAD4	2024	chr12:3069519:+	AMN1	22230	chr12:31854941:-	ONLY_REF_SPLICE	YES	36	72	0.32	0.19	0.0118	0.1892	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.19	0.32	0.201	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	FTH1--CSTB	3	0	FTH1	1226	chr11:61734907:-	CSTB	8340	chr21:45196162:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Esophagus=[count:2=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Esophagus_-_Mucosa=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,CSTB->Oncogene{Bushman},chr21:45192393-45196326:-,cystatin_B	SU8686_PANCREAS	1	1	0.0355	TRUE	1	0	0	2	0	TRUE	ACH-000114
SU8686_PANCREAS	TXN--UBB	3	0	TXN	4211	chr9:113007058:-	UBB	9283	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	TXN->Oncogene{Bushman},chr9:113006091-113018920:-,thioredoxin,UBB->chr17:16284112-16286059:+,ubiquitin_B	SU8686_PANCREAS	1	1	0.0355	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	ETNK1--RP11-125O5.2	1	7	ETNK1	3386	chr12:22796956:+	RP11-125O5.2	26258	chr12:21279042:+	ONLY_REF_SPLICE	YES	150	0	0.05	1	0.0118	0.0828	ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,RP11-125O5.2->chr12:21200113-21329829:+	SU8686_PANCREAS	0.05	1	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	ZNF461--CLIP3	2	3	ZNF461	5143	chr19:37147350:-	CLIP3	21650	chr19:36508893:-	ONLY_REF_SPLICE	YES	26	21	0.16	0.19	0.0236	0.0355	ZNF461->chr19:37128094-37157755:-,zinc_finger_protein_461,CLIP3->CAP-Gly_domain_containing_linker_protein_3,chr19:36505562-36524245:-	SU8686_PANCREAS	0.16	0.19	0.0591	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	NR1H2--CYP2A7	2	2	NR1H2	2218	chr19:50841333:+	CYP2A7	16199	chr19:41387656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0.0236	NR1H2->chr19:50832910-50886239:+,nuclear_receptor_subfamily_1_group_H_member_2,CYP2A7->chr19:41381344-41388657:-,cytochrome_P450_family_2_subfamily_A_member_7	SU8686_PANCREAS	1	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	PPFIBP1--ABCC9	2	2	PPFIBP1	1935	chr12:27677298:+	ABCC9	44593	chr12:22089628:-	ONLY_REF_SPLICE	NO	54	0	0.07	1	0.0236	0.0236	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,ABCC9->ATP_binding_cassette_subfamily_C_member_9,chr12:21950335-22094336:-	SU8686_PANCREAS	0.07	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	ZNF473--SPTBN4	1	5	ZNF473	1409	chr19:50529379:+	SPTBN4	21946	chr19:40998870:+	ONLY_REF_SPLICE	NO	56	10	0.1	0.38	0.0118	0.0591	ZNF473->chr19:50528971-50556671:+,zinc_finger_protein_473,SPTBN4->chr19:40972148-41082370:+,spectrin_beta,_non-erythrocytic_4	SU8686_PANCREAS	0.1	0.38	0.0709	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	AP2M1--TMEM181	2	0	AP2M1	6526	chr3:183898669:+	TMEM181	14167	chr6:158994452:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AP2M1->adaptor_related_protein_complex_2_mu_1_subunit,chr3:183892477-183901879:+,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	SU8686_PANCREAS	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	DBNL--NPC1L1	2	0	DBNL	1181	chr7:44084419:+	NPC1L1	22986	chr7:44579941:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DBNL->chr7:44084239-44109055:+,drebrin_like,NPC1L1->NPC1_like_intracellular_cholesterol_transporter_1,chr7:44552134-44580914:-	SU8686_PANCREAS	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	HSPE1--IFRD1	2	0	HSPE1	2245	chr2:198365962:+	IFRD1	18959	chr7:112101921:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	HSPE1->chr2:198364718-198368181:+,heat_shock_protein_family_E_(Hsp10)_member_1,IFRD1->chr7:112063023-112121072:+,interferon_related_developmental_regulator_1	SU8686_PANCREAS	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	ZNF461--CLIP3	1	3	ZNF461	1164	chr19:37157592:-	CLIP3	20335	chr19:36510208:-	ONLY_REF_SPLICE	YES	49	14	0.08	0.22	0.0118	0.0355	ZNF461->chr19:37128094-37157755:-,zinc_finger_protein_461,CLIP3->CAP-Gly_domain_containing_linker_protein_3,chr19:36505562-36524245:-	SU8686_PANCREAS	0.08	0.22	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	1	2	TEAD4	1152	chr12:3068647:+	AMN1	18863	chr12:31867885:-	ONLY_REF_SPLICE	YES	15	26	0.17	0.1	0.0118	0.0236	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.1	0.17	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	NR1H2--CYP2A7	1	1	NR1H2	2218	chr19:50841333:+	CYP2A7	19810	chr19:41383898:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0118	0.0118	NR1H2->chr19:50832910-50886239:+,nuclear_receptor_subfamily_1_group_H_member_2,CYP2A7->chr19:41381344-41388657:-,cytochrome_P450_family_2_subfamily_A_member_7	SU8686_PANCREAS	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000114
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--IGH@	3684	0	MIR142	1039	chr17:56409831:-	IGH@	113632	chr14:106209407:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	40.1886	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	40.1886	TRUE	0	1	0	3	1	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS15--DAZAP1	612	69	RPS15	1534	chr19:1438891:+	DAZAP1	13820	chr19:1422347:+	ONLY_REF_SPLICE	YES	123	295	0.85	0.7	6.6763	0.7527	LOCAL_REARRANGEMENT:+:[2639],RPS15->chr19:1438358-1440583:+,ribosomal_protein_S15,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.85	7.429	TRUE	0	0	0	2	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFNA4--RUSC1	233	71	EFNA4	2917	chr1:155039916:+	RUSC1	11568	chr1:155294636:+	ONLY_REF_SPLICE	YES	33	8	0.9	0.97	2.5418	0.7745	{Klijn_CCL:Lymphoid=1},EFNA4->chr1:155036207-155042029:+,ephrin_A4,RUSC1->RUN_and_SH3_domain_containing_1,chr1:155290687-155300905:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.97	3.3163	TRUE	0	0	0	2	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KDM4B--UHRF1	90	0	KDM4B	1117	chr19:4969241:+	UHRF1	52451	chr19:4960668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.9818	0	YOSHIHARA_TCGA_num_samples[BRCA:2],LOCAL_REARRANGEMENT:+:[6960],KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9818	TRUE	0	1	0	1	1	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	METTL16--SMG6	80	12	METTL16	1133	chr17:2415053:-	SMG6	33391	chr17:2187029:-	ONLY_REF_SPLICE	YES	5	10	0.95	0.9	0.8727	0.1309	GTEx&tcga_normals:1/3694=0.03%,METTL16->chr17:2308856-2415185:-,methyltransferase_like_16,SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.95	1.0036	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR1--BFSP2-AS1	33	8	PLSCR1	1398	chr3:146262254:-	BFSP2-AS1	18198	chr3:133174307:-	ONLY_REF_SPLICE	YES	56	0	0.42	1	0.36	0.0873	PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1,BFSP2-AS1->BFSP2_antisense_RNA_1,chr3:133148113-133174620:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.4473	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XPO6--NPIPB6	30	7	XPO6	1555	chr16:28222687:-	NPIPB6	42648	chr16:28356074:-	ONLY_REF_SPLICE	YES	79	8	0.32	0.82	0.3273	0.0764	XPO6->chr16:28109300-28223241:-,exportin_6,NPIPB6->chr16:28353876-28374829:-,nuclear_pore_complex_interacting_protein_family_member_B6	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.82	0.4037	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCAF7--TANC2	27	6	DCAF7	1355	chr17:61628176:+	TANC2	39146	chr17:61457079:+	ONLY_REF_SPLICE	YES	216	3	0.13	0.92	0.2945	0.0655	DCAF7->DDB1_and_CUL4_associated_factor_7,chr17:61627822-61671639:+,TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.92	0.36	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NEMF--RP11-305L7.3	27	4	NEMF	21774	chr14:50269171:-	RP11-305L7.3	37791	chr9:93881842:-	ONLY_REF_SPLICE	YES	67	0	0.32	1	0.2945	0.0436	NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,RP11-305L7.3->chr9:93881420-93925369:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.3381	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUMF1--AC018816.3	26	8	SUMF1	7757	chr3:4452549:-	AC018816.3	32665	chr3:4898429:-	INCL_NON_REF_SPLICE	YES	34	0	0.5	1	0.2836	0.0873	SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,AC018816.3->chr3:4855978-4928977:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.3709	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC016629.3--LINC01054	23	12	AC016629.3	2367	chr19:59109073:-	LINC01054	8235	chr13:115096253:-	ONLY_REF_SPLICE	YES	2	10	0.95	0.78	0.2509	0.1309	AC016629.3->chr19:59105263-59110722:-,LINC01054->chr13:115095034-115099423:-,long_intergenic_non-protein_coding_RNA_1054	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.95	0.3818	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ2A--PRIM1	15	12	BAZ2A	3376	chr12:57023909:-	PRIM1	27855	chr12:57144979:-	ONLY_REF_SPLICE	YES	102	49	0.21	0.36	0.1636	0.1309	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[94780],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,PRIM1->chr12:57125380-57146157:-,primase_(DNA)_subunit_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.36	0.2945	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL672183.2--CDC16	14	9	AL672183.2	1369	chr1:249231148:+	CDC16	22080	chr13:115037659:+	INCL_NON_REF_SPLICE	YES	0	135	1	0.15	0.1527	0.0982	AL672183.2->chr1:249230780-249231242:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.2509	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ2A--PRIM1	14	6	BAZ2A	2725	chr12:57024560:-	PRIM1	27855	chr12:57144979:-	ONLY_REF_SPLICE	YES	50	49	0.29	0.29	0.1527	0.0655	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[94780],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,PRIM1->chr12:57125380-57146157:-,primase_(DNA)_subunit_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.29	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--IGH@	15	0	MIR142	1039	chr17:56409831:-	IGH@	113831	chr14:106209208:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1636	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1636	TRUE	0	1	0	3	1	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAWR--RP11-390N6.1	11	12	PAWR	9188	chr12:80007355:-	RP11-390N6.1	29911	chr12:79370449:-	ONLY_REF_SPLICE	YES	24	1	0.49	0.96	0.12	0.1309	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP11-390N6.1->chr12:79354038-79439424:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.96	0.2509	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PXK--FLNB	12	5	PXK	1211	chr3:58318817:+	FLNB	58462	chr3:58128377:+	ONLY_REF_SPLICE	YES	76	0	0.18	1	0.1309	0.0545	PXK->PX_domain_containing_serine/threonine_kinase_like,chr3:58318607-58411748:+,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.1854	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR1--BFSP2-AS1	11	4	PLSCR1	1398	chr3:146262254:-	BFSP2-AS1	19333	chr3:133167739:-	ONLY_REF_SPLICE	YES	56	0	0.21	1	0.12	0.0436	PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1,BFSP2-AS1->BFSP2_antisense_RNA_1,chr3:133148113-133174620:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.1636	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ2A--PRIM1	9	6	BAZ2A	1635	chr12:57029966:-	PRIM1	27855	chr12:57144979:-	ONLY_REF_SPLICE	YES	51	49	0.23	0.23	0.0982	0.0655	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[94780],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,PRIM1->chr12:57125380-57146157:-,primase_(DNA)_subunit_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.23	0.1637	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-114H21.2--CTB-1I21.1	5	21	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	17	0	0.6	1	0.0545	0.2291	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.2836	TRUE	0	2	0	12	2	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XPO6--NPIPB6	8	7	XPO6	2691	chr16:28220308:-	NPIPB6	42648	chr16:28356074:-	ONLY_REF_SPLICE	YES	120	8	0.11	0.65	0.0873	0.0764	XPO6->chr16:28109300-28223241:-,exportin_6,NPIPB6->chr16:28353876-28374829:-,nuclear_pore_complex_interacting_protein_family_member_B6	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.65	0.1637	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP7--RPL24	7	5	SENP7	3297	chr3:101212717:-	RPL24	32195	chr3:101405401:-	ONLY_REF_SPLICE	YES	16	28	0.43	0.3	0.0764	0.0545	SENP7->SUMO1/sentrin_specific_peptidase_7,chr3:101043049-101232085:-,RPL24->chr3:101399935-101405626:-,ribosomal_protein_L24	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.43	0.1309	TRUE	0	0	0	2	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUMF1--AC018816.3	7	1	SUMF1	7757	chr3:4452549:-	AC018816.3	34147	chr3:4872702:-	ONLY_REF_SPLICE	YES	34	4	0.19	0.67	0.0764	0.0109	SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,AC018816.3->chr3:4855978-4928977:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.67	0.0873	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM50B--DONSON	6	3	TMEM50B	12231	chr21:34821089:-	DONSON	34319	chr21:34932013:-	ONLY_REF_SPLICE	YES	39	15	0.19	0.38	0.0655	0.0327	LOCAL_REARRANGEMENT:-:[79530],TMEM50B->chr21:34804792-34852318:-,transmembrane_protein_50B,DONSON->chr21:34931848-34961014:-,downstream_neighbor_of_SON	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.38	0.0982	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-114H21.2--CTB-1I21.1	1	21	RP11-114H21.2	2303	chr5:135840382:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	18	0	0.55	1	0.0109	0.2291	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.24	TRUE	0	0	0	4	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-498C9.2--GAPDH	6	0	RP11-498C9.2	1445	chr17:79801485:+	GAPDH	8196	chr12:6646518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0	RP11-498C9.2->chr17:79801041-79801834:+,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0655	TRUE	0	0	0	2	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRDMT1--ST8SIA6	6	0	TRDMT1	1484	chr10:17243570:-	ST8SIA6	29007	chr10:17432619:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0655	0	TRDMT1->chr10:17184253-17244053:-,tRNA_aspartic_acid_methyltransferase_1,ST8SIA6->ST8_alpha-N-acetyl-neuraminide_alpha-2,8-sialyltransferase_6,chr10:17360382-17496329:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0655	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP97--FAM172BP	5	0	CEP97	1795	chr3:101443563:+	FAM172BP	24005	chr3:101240726:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0545	0	CEP97->centrosomal_protein_97,chr3:101442769-101489406:+,FAM172BP->chr3:101237711-101242731:+,family_with_sequence_similarity_172_member_B,_pseudogene	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--IGH@	5	0	MIR142	1039	chr17:56409831:-	IGH@	114480	chr14:106208559:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0545	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0545	TRUE	0	1	0	3	1	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RDH13--PPP6R1	5	0	RDH13	13227	chr19:55558755:-	PPP6R1	26396	chr19:55758477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0545	0	RDH13->chr19:55550476-55582659:-,retinol_dehydrogenase_13_(all-trans/9-cis),PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000350.4--PKM	4	3	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	15	1	0.32	0.0436	0.0327	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.0763	TRUE	0	0	0	14	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAWR--RP11-390N6.1	3	7	PAWR	9188	chr12:80007355:-	RP11-390N6.1	30988	chr12:79354494:-	ONLY_REF_SPLICE	YES	24	0	0.29	1	0.0327	0.0764	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP11-390N6.1->chr12:79354038-79439424:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.1091	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR20--TECPR2	4	3	WDR20	1670	chr14:102606509:+	TECPR2	25600	chr14:102842987:+	ONLY_REF_SPLICE	YES	39	5	0.15	0.58	0.0436	0.0327	WDR20->WD_repeat_domain_20,chr14:102605840-102691184:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.58	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL672183.2--CDC16	4	2	AL672183.2	1369	chr1:249231148:+	CDC16	22174	chr13:115037753:+	INCL_NON_REF_SPLICE	YES	0	89	1	0.06	0.0436	0.0218	AL672183.2->chr1:249230780-249231242:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBX5--ZNF385A	4	1	CBX5	1095	chr12:54673792:-	ZNF385A	23995	chr12:54778348:-	ONLY_REF_SPLICE	YES	43	2	0.1	0.71	0.0436	0.0109	LOCAL_REARRANGEMENT:-:[89031],CBX5->chr12:54624724-54673886:-,chromobox_5,ZNF385A->chr12:54762917-54785082:-,zinc_finger_protein_385A	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.71	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM46C--WDR3	4	1	FAM46C	1220	chr1:118148775:+	WDR3	11957	chr1:118475911:+	ONLY_REF_SPLICE	YES	16	47	0.24	0.1	0.0436	0.0109	FAM46C->ArcherDX_panel,FoundationOne_panel,chr1:118148556-118170994:+,family_with_sequence_similarity_46_member_C,WDR3->WD_repeat_domain_3,chr1:118472343-118509165:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.24	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CFDP1--ADIPOR2	3	4	CFDP1	5421	chr16:75445723:-	ADIPOR2	24521	chr12:1863424:+	ONLY_REF_SPLICE	YES	97	16	0.07	0.3	0.0327	0.0436	CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.3	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--IGH@	4	0	MIR142	1039	chr17:56409831:-	IGH@	113828	chr14:106209211:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	1	0	3	1	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR20--TECPR2	4	0	WDR20	1485	chr14:102606324:+	TECPR2	25600	chr14:102842987:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	WDR20->WD_repeat_domain_20,chr14:102605840-102691184:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR1--BFSP2-AS1	3	3	PLSCR1	1398	chr3:146262254:-	BFSP2-AS1	20448	chr3:133164419:-	ONLY_REF_SPLICE	YES	56	2	0.1	0.75	0.0327	0.0327	PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1,BFSP2-AS1->BFSP2_antisense_RNA_1,chr3:133148113-133174620:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.75	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ2A--PRIM1	2	6	BAZ2A	3376	chr12:57023909:-	PRIM1	29013	chr12:57140816:-	ONLY_REF_SPLICE	YES	102	43	0.07	0.16	0.0218	0.0655	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[94780],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,PRIM1->chr12:57125380-57146157:-,primase_(DNA)_subunit_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.16	0.0873	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--IGH@	3	1	MIR142	1039	chr17:56409831:-	IGH@	110327	chr14:106237742:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.0109	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--IGH@	3	0	MIR142	1039	chr17:56409831:-	IGH@	122546	chr14:106111126:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRDMT1--ST8SIA6	3	0	TRDMT1	1484	chr10:17243570:-	ST8SIA6	27908	chr10:17495656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	TRDMT1->chr10:17184253-17244053:-,tRNA_aspartic_acid_methyltransferase_1,ST8SIA6->ST8_alpha-N-acetyl-neuraminide_alpha-2,8-sialyltransferase_6,chr10:17360382-17496329:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	2	1	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0218	0.0109	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0327	TRUE	0	0	0	16	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM50B--DONSON	1	5	TMEM50B	13354	chr21:34819325:-	DONSON	34319	chr21:34932013:-	ONLY_REF_SPLICE	YES	57	15	0.1	0.29	0.0109	0.0545	LOCAL_REARRANGEMENT:-:[79530],TMEM50B->chr21:34804792-34852318:-,transmembrane_protein_50B,DONSON->chr21:34931848-34961014:-,downstream_neighbor_of_SON	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.29	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CFDP1--ADIPOR2	1	4	CFDP1	5421	chr16:75445723:-	ADIPOR2	22092	chr12:1812052:+	ONLY_REF_SPLICE	YES	97	19	0.05	0.21	0.0109	0.0436	CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.21	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GALNT18--GNAS	2	0	GALNT18	1647	chr11:11642906:-	GNAS	34617	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GALNT18->chr11:11292423-11643552:-,polypeptide_N-acetylgalactosaminyltransferase_18,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--ERBB4	2	0	IKZF2	5217	chr2:214012432:-	ERBB4	30646	chr2:212989628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	TRUE	0	1	0	2	1	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDM1--LRBA	2	0	PRDM1	6630	chr6:106547427:+	LRBA	46081	chr4:151753128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	PRDM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},PR_domain_1,chr6:106534195-106557814:+,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR20--TECPR2	2	0	WDR20	1670	chr14:102606509:+	TECPR2	26891	chr14:102873675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	WDR20->WD_repeat_domain_20,chr14:102605840-102691184:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR20--TECPR2	2	0	WDR20	1485	chr14:102606324:+	TECPR2	26891	chr14:102873675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	WDR20->WD_repeat_domain_20,chr14:102605840-102691184:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RDH13--PPP6R1	1	1	RDH13	13509	chr19:55558473:-	PPP6R1	26396	chr19:55758477:-	ONLY_REF_SPLICE	YES	47	6	0.04	0.25	0.0109	0.0109	RDH13->chr19:55550476-55582659:-,retinol_dehydrogenase_13_(all-trans/9-cis),PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.25	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TYW1B--CALN1	1	1	TYW1B	15056	chr7:72081657:-	CALN1	27073	chr7:71743795:-	ONLY_REF_SPLICE	YES	17	13	0.11	0.13	0.0109	0.0109	TYW1B->chr7:72023729-72298777:-,tRNA-yW_synthesizing_protein_1_homolog_B,CALN1->calneuron_1,chr7:71244476-71912136:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.13	0.0218	TRUE	1	3	0	1	3	TRUE	ACH-000697
LC1F_LUNG	ADNP2--PLIN3	249	77	ADNP2	3112	chr18:77875533:+	PLIN3	14757	chr19:4867669:-	INCL_NON_REF_SPLICE	YES	13	0	0.96	1	3.3514	1.0364	ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,PLIN3->chr19:4838353-4867780:-,perilipin_3	LC1F_LUNG	0.96	1	4.3878	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	XRCC4--C7orf10	100	31	XRCC4	3492	chr5:82407022:+	C7orf10	34349	chr7:40789033:+	ONLY_REF_SPLICE	YES	26	2	0.83	0.98	1.3459	0.4172	XRCC4->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_4,chr5:82373317-82649606:+,C7orf10->chr7:40174575-40900362:+	LC1F_LUNG	0.83	0.98	1.7631	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	PCYT1A--RBFOX1	82	23	PCYT1A	8116	chr3:195974238:-	RBFOX1	26948	chr16:6704604:+	ONLY_REF_SPLICE	YES	206	0	0.34	1	1.1037	0.3096	PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	LC1F_LUNG	0.34	1	1.4133	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	CACNA2D1--SEMA3E	61	12	CACNA2D1	4816	chr7:81964451:-	SEMA3E	55743	chr7:83098618:-	ONLY_REF_SPLICE	YES	8	0	0.9	1	0.821	0.1615	CACNA2D1->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_1,chr7:81575760-82073114:-,SEMA3E->chr7:82993222-83278326:-,semaphorin_3E	LC1F_LUNG	0.9	1	0.9825	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	STON2--RP11-299L17.3	48	15	STON2	2681	chr14:81893446:-	RP11-299L17.3	23146	chr14:81908786:-	ONLY_REF_SPLICE	YES	12	0	0.84	1	0.646	0.2019	LOCAL_REARRANGEMENT:-:[5522],STON2->chr14:81727000-81902809:-,stonin_2,RP11-299L17.3->chr14:81908331-81916501:-	LC1F_LUNG	0.84	1	0.8479	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	TBL1XR1--YEATS2	32	3	TBL1XR1	1353	chr3:176914909:-	YEATS2	49609	chr3:183490093:+	ONLY_REF_SPLICE	YES	12	62	0.74	0.36	0.4307	0.0404	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	LC1F_LUNG	0.36	0.74	0.4711	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	TBL1XR1--YEATS2	25	1	TBL1XR1	1353	chr3:176914909:-	YEATS2	50868	chr3:183491421:+	ONLY_REF_SPLICE	YES	12	89	0.68	0.23	0.3365	0.0135	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	LC1F_LUNG	0.23	0.68	0.35	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ADNP2--PLIN3	3	77	ADNP2	3122	chr18:77875543:+	PLIN3	14757	chr19:4867669:-	INCL_NON_REF_SPLICE	YES	13	0	0.86	1	0.0404	1.0364	ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,PLIN3->chr19:4838353-4867780:-,perilipin_3	LC1F_LUNG	0.86	1	1.0768	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ANKRD11--TMA7	20	8	ANKRD11	25630	chr16:89350589:-	TMA7	38242	chr3:48481664:+	INCL_NON_REF_SPLICE	YES	23	0	0.55	1	0.2692	0.1077	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,TMA7->chr3:48481667-48485616:+,translation_machinery_associated_7_homolog	LC1F_LUNG	0.55	1	0.3769	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	PANX2--MOV10L1	17	4	PANX2	1226	chr22:50609385:+	MOV10L1	33277	chr22:50591474:+	ONLY_REF_SPLICE	YES	76	3	0.22	0.88	0.2288	0.0538	LOCAL_REARRANGEMENT:+:[9041],PANX2->chr22:50609160-50618723:+,pannexin_2,MOV10L1->Mov10_RISC_complex_RNA_helicase_like_1,chr22:50528308-50600119:+	LC1F_LUNG	0.22	0.88	0.2826	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	STON2--SEL1L	14	6	STON2	1145	chr14:81902665:-	SEL1L	23064	chr14:81994082:-	ONLY_REF_SPLICE	YES	22	97	0.48	0.17	0.1884	0.0808	LOCAL_REARRANGEMENT:-:[35084],STON2->chr14:81727000-81902809:-,stonin_2,SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-	LC1F_LUNG	0.17	0.48	0.2692	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	PSPC1--ZMYM5	13	9	PSPC1	5212	chr13:20325411:-	ZMYM5	22844	chr13:20411961:-	ONLY_REF_SPLICE	YES	178	29	0.11	0.43	0.175	0.1211	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_REARRANGEMENT:-:[40480],PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,ZMYM5->chr13:20397622-20437776:-,zinc_finger_MYM-type_containing_5	LC1F_LUNG	0.11	0.43	0.2961	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ROCK2--LINC00276	13	6	ROCK2	4937	chr2:11426665:-	LINC00276	39175	chr2:14457227:-	ONLY_REF_SPLICE	YES	23	0	0.45	1	0.175	0.0808	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,LINC00276->chr2:13850656-14541087:-,long_intergenic_non-protein_coding_RNA_276	LC1F_LUNG	0.45	1	0.2558	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	STON2--SEL1L	12	10	STON2	2681	chr14:81893446:-	SEL1L	23064	chr14:81994082:-	ONLY_REF_SPLICE	YES	12	97	0.65	0.18	0.1615	0.1346	LOCAL_REARRANGEMENT:-:[35084],STON2->chr14:81727000-81902809:-,stonin_2,SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-	LC1F_LUNG	0.18	0.65	0.2961	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ADNP2--PLIN3	3	42	ADNP2	3046	chr18:77875467:+	PLIN3	14757	chr19:4867669:-	INCL_NON_REF_SPLICE	YES	9	0	0.83	1	0.0404	0.5653	ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,PLIN3->chr19:4838353-4867780:-,perilipin_3	LC1F_LUNG	0.83	1	0.6057	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	BRAF--RP5-968D22.1	9	14	BRAF	9508	chr7:140494108:-	RP5-968D22.1	35382	chr1:168376556:-	INCL_NON_REF_SPLICE	YES	46	0	0.33	1	0.1211	0.1884	BRAF->ArcherDX_panel,B-Raf_proto-oncogene,_serine/threonine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:140419127-140624564:-,RP5-968D22.1->chr1:168370067-168391894:-	LC1F_LUNG	0.33	1	0.3095	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	RP11-37B2.1--TMEM55A	11	4	RP11-37B2.1	1683	chr8:90769273:-	TMEM55A	27698	chr8:92008972:-	ONLY_REF_SPLICE	YES	1	30	0.94	0.33	0.1481	0.0538	RP11-37B2.1->chr8:90621638-90769955:-,TMEM55A->chr8:92006024-92053292:-,transmembrane_protein_55A	LC1F_LUNG	0.33	0.94	0.2019	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	PSPC1--ZMYM5	8	12	PSPC1	5212	chr13:20325411:-	ZMYM5	21680	chr13:20413125:-	ONLY_REF_SPLICE	YES	178	20	0.1	0.5	0.1077	0.1615	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_REARRANGEMENT:-:[40480],PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,ZMYM5->chr13:20397622-20437776:-,zinc_finger_MYM-type_containing_5	LC1F_LUNG	0.1	0.5	0.2692	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	XRCC4--C7orf10	2	32	XRCC4	3492	chr5:82407022:+	C7orf10	33271	chr7:40723655:+	ONLY_REF_SPLICE	YES	26	2	0.57	0.94	0.0269	0.4307	XRCC4->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_4,chr5:82373317-82649606:+,C7orf10->chr7:40174575-40900362:+	LC1F_LUNG	0.57	0.94	0.4576	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	PPP2CB--TEX15	9	1	PPP2CB	11885	chr8:30643727:-	TEX15	33911	chr8:30697480:-	ONLY_REF_SPLICE	YES	66	4	0.13	0.71	0.1211	0.0135	LOCAL_REARRANGEMENT:-:[17230],PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta,TEX15->chr8:30689060-30748122:-,testis_expressed_15	LC1F_LUNG	0.13	0.71	0.1346	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	RP11-385J1.2--KCNMB2	8	5	RP11-385J1.2	1917	chr3:178577277:-	KCNMB2	24210	chr3:178543376:+	ONLY_REF_SPLICE	YES	38	0	0.25	1	0.1077	0.0673	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	LC1F_LUNG	0.25	1	0.175	TRUE	0	0	0	2	0	TRUE	ACH-000705
LC1F_LUNG	BRAF--RP5-968D22.1	6	7	BRAF	9508	chr7:140494108:-	RP5-968D22.1	36462	chr1:168371581:-	ONLY_REF_SPLICE	YES	46	1	0.22	0.93	0.0808	0.0942	BRAF->ArcherDX_panel,B-Raf_proto-oncogene,_serine/threonine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:140419127-140624564:-,RP5-968D22.1->chr1:168370067-168391894:-	LC1F_LUNG	0.22	0.93	0.175	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ERGIC1--GPR98	7	2	ERGIC1	1159	chr5:172261436:+	GPR98	131732	chr5:90281161:+	ONLY_REF_SPLICE	YES	5	13	0.64	0.41	0.0942	0.0269	ERGIC1->chr5:172261278-172379688:+,endoplasmic_reticulum-golgi_intermediate_compartment_1,GPR98->chr5:89825161-90460038:+	LC1F_LUNG	0.41	0.64	0.1211	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	TBL1XR1--YEATS2	7	1	TBL1XR1	2134	chr3:176914128:-	YEATS2	50868	chr3:183491421:+	ONLY_REF_SPLICE	YES	16	89	0.33	0.08	0.0942	0.0135	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	LC1F_LUNG	0.08	0.33	0.1077	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ROCK2--LINC00276	5	1	ROCK2	4937	chr2:11426665:-	LINC00276	45562	chr2:13981739:-	ONLY_REF_SPLICE	YES	23	0	0.21	1	0.0673	0.0135	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,LINC00276->chr2:13850656-14541087:-,long_intergenic_non-protein_coding_RNA_276	LC1F_LUNG	0.21	1	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	PCYT1A--RBFOX1	3	7	PCYT1A	7276	chr3:195975078:-	RBFOX1	26948	chr16:6704604:+	ONLY_REF_SPLICE	YES	175	0	0.05	1	0.0404	0.0942	PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	LC1F_LUNG	0.05	1	0.1346	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	PSPC1--ZMYM5	4	3	PSPC1	5212	chr13:20325411:-	ZMYM5	24213	chr13:20409829:-	ONLY_REF_SPLICE	YES	178	8	0.04	0.47	0.0538	0.0404	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_REARRANGEMENT:-:[40480],PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,ZMYM5->chr13:20397622-20437776:-,zinc_finger_MYM-type_containing_5	LC1F_LUNG	0.04	0.47	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	RP11-385J1.2--KCNMB2	3	5	RP11-385J1.2	2989	chr3:178559333:-	KCNMB2	24210	chr3:178543376:+	ONLY_REF_SPLICE	YES	39	0	0.17	1	0.0404	0.0673	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	LC1F_LUNG	0.17	1	0.1077	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	NEK6--AFP	4	0	NEK6	1480	chr9:127020364:+	AFP	38419	chr4:74320953:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,AFP->alpha_fetoprotein,chr4:74296855-74321891:+	LC1F_LUNG	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ITSN1--EVA1C	3	3	ITSN1	24684	chr21:35169912:+	EVA1C	75078	chr21:33840004:+	ONLY_REF_SPLICE	YES	11	26	0.35	0.19	0.0404	0.0404	ITSN1->chr21:35014706-35272165:+,intersectin_1,EVA1C->chr21:33784314-33887707:+,eva-1_homolog_C_(C._elegans)	LC1F_LUNG	0.19	0.35	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ITSN1--EVA1C	2	5	ITSN1	24684	chr21:35169912:+	EVA1C	72757	chr21:33825620:+	ONLY_REF_SPLICE	YES	11	11	0.39	0.39	0.0269	0.0673	ITSN1->chr21:35014706-35272165:+,intersectin_1,EVA1C->chr21:33784314-33887707:+,eva-1_homolog_C_(C._elegans)	LC1F_LUNG	0.39	0.39	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	IGF2BP2--LPP	3	0	IGF2BP2	2393	chr3:185540941:-	LPP	43531	chr3:188326949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+	LC1F_LUNG	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	LINC00276--AC011897.2	3	0	LINC00276	8559	chr2:13981689:-	AC011897.2	13849	chr2:14756552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	LINC00276->chr2:13850656-14541087:-,long_intergenic_non-protein_coding_RNA_276,AC011897.2->chr2:14756552-14770316:+	LC1F_LUNG	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	STON2--RP11-299L17.3	1	7	STON2	1145	chr14:81902665:-	RP11-299L17.3	23146	chr14:81908786:-	ONLY_REF_SPLICE	YES	22	0	0.27	1	0.0135	0.0942	LOCAL_REARRANGEMENT:-:[5522],STON2->chr14:81727000-81902809:-,stonin_2,RP11-299L17.3->chr14:81908331-81916501:-	LC1F_LUNG	0.27	1	0.1077	TRUE	0	0	0	2	0	TRUE	ACH-000705
LC1F_LUNG	TBL1XR1--YEATS2	2	3	TBL1XR1	2134	chr3:176914128:-	YEATS2	49609	chr3:183490093:+	ONLY_REF_SPLICE	YES	16	62	0.24	0.07	0.0269	0.0404	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	LC1F_LUNG	0.07	0.24	0.0673	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ITSN1--EVA1C	1	5	ITSN1	24684	chr21:35169912:+	EVA1C	70496	chr21:33805459:+	ONLY_REF_SPLICE	YES	11	12	0.35	0.33	0.0135	0.0673	ITSN1->chr21:35014706-35272165:+,intersectin_1,EVA1C->chr21:33784314-33887707:+,eva-1_homolog_C_(C._elegans)	LC1F_LUNG	0.33	0.35	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	LRP1B--FYB	2	1	LRP1B	5706	chr2:142237965:-	FYB	118227	chr5:39153706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0.0135	LRP1B->ArcherDX_panel,FoundationOne_panel,LDL_receptor_related_protein_1B,chr2:140988992-142889270:-,FYB->FYN_binding_protein,chr5:39105338-39274630:-	LC1F_LUNG	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	NEK6--AFP	2	1	NEK6	1756	chr9:127020640:+	AFP	38419	chr4:74320953:+	ONLY_REF_SPLICE	NO	0	2	1	0.6	0.0269	0.0135	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,AFP->alpha_fetoprotein,chr4:74296855-74321891:+	LC1F_LUNG	0.6	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ERGIC1--GPR98	1	2	ERGIC1	1159	chr5:172261436:+	GPR98	132911	chr5:90368264:+	ONLY_REF_SPLICE	YES	5	30	0.38	0.09	0.0135	0.0269	ERGIC1->chr5:172261278-172379688:+,endoplasmic_reticulum-golgi_intermediate_compartment_1,GPR98->chr5:89825161-90460038:+	LC1F_LUNG	0.09	0.38	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	RP11-385J1.2--KCNMB2	1	1	RP11-385J1.2	1112	chr3:178578082:-	KCNMB2	24210	chr3:178543376:+	ONLY_REF_SPLICE	YES	10	0	0.17	1	0.0135	0.0135	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	LC1F_LUNG	0.17	1	0.027	TRUE	0	0	0	2	0	TRUE	ACH-000705
LC1F_LUNG	SLCO5A1--RP11-321L2.2	1	1	SLCO5A1	4298	chr8:70744002:-	RP11-321L2.2	24348	chr9:23895604:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0135	0.0135	SLCO5A1->chr8:70579282-70747299:-,solute_carrier_organic_anion_transporter_family_member_5A1,RP11-321L2.2->chr9:23894988-23898052:-	LC1F_LUNG	0.67	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ST7L--FSCN3	1	1	ST7L	6176	chr1:113153463:-	FSCN3	37633	chr7:127240248:+	ONLY_REF_SPLICE	YES	27	0	0.07	1	0.0135	0.0135	ST7L->chr1:113066140-113163447:-,suppression_of_tumorigenicity_7_like,FSCN3->chr7:127231463-127242198:+,fascin_actin-bundling_protein_3	LC1F_LUNG	0.07	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000705
TC71_BONE	EWSR1--FLI1	298	139	EWSR1	11554	chr22:29683123:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	402	0	0.52	1	3.5247	1.6441	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	TC71_BONE	0.52	1	5.1688	TRUE	0	0	0	6	0	TRUE	ACH-000424
TC71_BONE	LINC00355--DNAJC3	74	49	LINC00355	1770	chr13:64649375:-	DNAJC3	15327	chr13:96409898:+	ONLY_REF_SPLICE	YES	56	15	0.69	0.89	0.8753	0.5796	LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355,DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+	TC71_BONE	0.69	0.89	1.4549	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	LINC00355--DNAJC3	65	60	LINC00355	2961	chr13:64608480:-	DNAJC3	15327	chr13:96409898:+	ONLY_REF_SPLICE	YES	30	15	0.81	0.89	0.7688	0.7097	LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355,DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+	TC71_BONE	0.81	0.89	1.4785	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	CTD-2020K17.1--MRPL13	43	20	CTD-2020K17.1	2955	chr17:43297635:-	MRPL13	13942	chr8:121432178:-	ONLY_REF_SPLICE	YES	22	1286	0.74	0.05	0.5086	0.2366	CTD-2020K17.1->chr17:43268298-43299589:-,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	TC71_BONE	0.05	0.74	0.7452	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	ACACB--FBXO21	29	8	ACACB	48424	chr12:109694041:+	FBXO21	70585	chr12:117603422:-	ONLY_REF_SPLICE	YES	11	36	0.77	0.51	0.343	0.0946	{Klijn_CCL:Sarcomatoid=1},ACACB->acetyl-CoA_carboxylase_beta,chr12:109554400-109706031:+,FBXO21->F-box_protein_21,chr12:117581146-117628336:-	TC71_BONE	0.51	0.77	0.4376	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	RP11-152P17.2--RP11-649G15.2	26	20	RP11-152P17.2	3511	chr8:106939879:-	RP11-649G15.2	17753	chr8:107535061:-	ONLY_REF_SPLICE	YES	40	0	0.53	1	0.3075	0.2366	RP11-152P17.2->chr8:106792474-107072752:-,RP11-649G15.2->chr8:107532702-107669776:-	TC71_BONE	0.53	1	0.5441	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	EWSR1--FLI1	1	74	EWSR1	11554	chr22:29683123:+	FLI1	39468	chr11:128677075:+	ONLY_REF_SPLICE	YES	402	3	0.16	0.96	0.0118	0.8753	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	TC71_BONE	0.16	0.96	0.8871	TRUE	0	0	0	4	0	TRUE	ACH-000424
TC71_BONE	RP11-152P17.2--RP11-649G15.2	13	8	RP11-152P17.2	1144	chr8:107072609:-	RP11-649G15.2	17753	chr8:107535061:-	ONLY_REF_SPLICE	YES	24	0	0.47	1	0.1538	0.0946	RP11-152P17.2->chr8:106792474-107072752:-,RP11-649G15.2->chr8:107532702-107669776:-	TC71_BONE	0.47	1	0.2484	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	EWSR1--FLI1	1	48	EWSR1	11554	chr22:29683123:+	FLI1	40528	chr11:128679052:+	ONLY_REF_SPLICE	YES	402	34	0.11	0.59	0.0118	0.5677	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	TC71_BONE	0.11	0.59	0.5795	TRUE	0	0	0	5	0	TRUE	ACH-000424
TC71_BONE	YES1--RP11-672L10.3	11	8	YES1	1433	chr18:812115:-	RP11-672L10.3	21545	chr18:894696:-	ONLY_REF_SPLICE	YES	106	0	0.15	1	0.1301	0.0946	LOCAL_REARRANGEMENT:-:[81889],YES1->Oncogene{Bushman},YES_proto-oncogene_1,_Src_family_tyrosine_kinase,chr18:721588-812547:-,RP11-672L10.3->chr18:894436-907681:-	TC71_BONE	0.15	1	0.2247	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	PTBP2--ELAVL4	11	5	PTBP2	5162	chr1:97217056:+	ELAVL4	36655	chr1:50642761:+	ONLY_REF_SPLICE	YES	49	1	0.25	0.94	0.1301	0.0591	HGNC_GENEFAM,PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,ELAVL4->ELAV_like_neuron-specific_RNA_binding_protein_4,chr1:50513686-50669458:+	TC71_BONE	0.25	0.94	0.1892	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	MTSS1--KB-1562D12.1	9	1	MTSS1	4065	chr8:125711767:-	KB-1562D12.1	30827	chr8:102473845:-	ONLY_REF_SPLICE	YES	41	0	0.2	1	0.1065	0.0118	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,KB-1562D12.1->chr8:102473405-102504727:-	TC71_BONE	0.2	1	0.1183	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	TBL1XR1--RP11-708B6.2	9	1	TBL1XR1	5415	chr3:176816254:-	RP11-708B6.2	34615	chr11:109383451:-	ONLY_REF_SPLICE	YES	24	0	0.29	1	0.1065	0.0118	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-708B6.2->chr11:109225812-109454633:-	TC71_BONE	0.29	1	0.1183	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	AL136376.1--RPS28	9	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1065	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	TC71_BONE	1	1	0.1065	TRUE	0	0	0	12	0	TRUE	ACH-000424
TC71_BONE	DNAJC3--LINC00355	8	3	DNAJC3	4510	chr13:96377506:+	LINC00355	23085	chr13:64576542:-	ONLY_REF_SPLICE	YES	16	12	0.41	0.48	0.0946	0.0355	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355	TC71_BONE	0.41	0.48	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	DNAJC3--LINC00355	6	8	DNAJC3	4510	chr13:96377506:+	LINC00355	22026	chr13:64577601:-	INCL_NON_REF_SPLICE	YES	16	28	0.47	0.33	0.071	0.0946	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355	TC71_BONE	0.33	0.47	0.1656	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	RP11-152P17.2--RP11-649G15.2	2	20	RP11-152P17.2	3520	chr8:106939870:-	RP11-649G15.2	17753	chr8:107535061:-	ONLY_REF_SPLICE	YES	41	0	0.35	1	0.0237	0.2366	RP11-152P17.2->chr8:106792474-107072752:-,RP11-649G15.2->chr8:107532702-107669776:-	TC71_BONE	0.35	1	0.2603	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	MAP1LC3B--MCHR1	6	3	MAP1LC3B	4437	chr16:87426073:+	MCHR1	15966	chr22:41076953:+	ONLY_REF_SPLICE	YES	52	3	0.15	0.75	0.071	0.0355	MAP1LC3B->chr16:87417601-87438385:+,microtubule_associated_protein_1_light_chain_3_beta,MCHR1->chr22:41074754-41078818:+,melanin_concentrating_hormone_receptor_1	TC71_BONE	0.15	0.75	0.1065	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	CRELD2--FBLN1	6	0	CRELD2	5500	chr22:50316355:+	FBLN1	26820	chr22:45938035:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.071	0	CRELD2->chr22:50311815-50321188:+,cysteine_rich_with_EGF_like_domains_2,FBLN1->Oncogene{Bushman},chr22:45898118-45997015:+,fibulin_1	TC71_BONE	1	1	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	DNAJC3--LINC00355	4	8	DNAJC3	4510	chr13:96377506:+	LINC00355	22029	chr13:64577598:-	ONLY_REF_SPLICE	YES	16	26	0.43	0.32	0.0473	0.0946	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355	TC71_BONE	0.32	0.43	0.1419	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	RCC1--NFYB	6	0	RCC1	2175	chr1:28834672:+	NFYB	20792	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.071	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	TC71_BONE	1	1	0.071	TRUE	0	0	0	2	0	TRUE	ACH-000424
TC71_BONE	UBE2B--RP11-950K24.2	6	0	UBE2B	1461	chr5:133707330:+	RP11-950K24.2	13894	chr5:118463913:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0	UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B,RP11-950K24.2->chr5:118462477-118464139:-	TC71_BONE	1	1	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	ZHX2--RP11-96B2.1	5	1	ZHX2	1553	chr8:123794185:+	RP11-96B2.1	12906	chr8:123499705:-	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0591	0.0118	ZHX2->chr8:123793633-123986750:+,zinc_fingers_and_homeoboxes_2,RP11-96B2.1->chr8:123497754-123502054:-	TC71_BONE	0.75	1	0.0709	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	LINC00355--DNAJC3	2	12	LINC00355	1770	chr13:64649375:-	DNAJC3	16480	chr13:96412294:+	ONLY_REF_SPLICE	YES	56	44	0.2	0.24	0.0237	0.1419	LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355,DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+	TC71_BONE	0.2	0.24	0.1656	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	TRPS1--CSMD3	4	1	TRPS1	17076	chr8:116430558:-	CSMD3	39402	chr8:114111192:-	ONLY_REF_SPLICE	YES	1	7	0.83	0.42	0.0473	0.0118	TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,CSMD3->CUB_and_Sushi_multiple_domains_3,Oncogene{Bushman},chr8:113235157-114449328:-	TC71_BONE	0.42	0.83	0.0591	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	ANP32B--SEPT7	4	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	TC71_BONE	1	1	0.0473	TRUE	1	1	0	18	1	TRUE	ACH-000424
TC71_BONE	BSG--PTBP1	4	0	BSG	2405	chr19:572701:+	PTBP1	15804	chr19:799413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0473	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	TC71_BONE	1	1	0.0473	TRUE	0	0	0	2	0	TRUE	ACH-000424
TC71_BONE	RP13-16H11.2--GNAS	4	0	RP13-16H11.2	2132	chr10:26957336:-	GNAS	22156	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0473	0	RP13-16H11.2->chr10:26953135-26965088:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TC71_BONE	1	1	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	UBQLN1--SLC28A3	4	0	UBQLN1	7108	chr9:86292642:-	SLC28A3	35999	chr9:86894988:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0473	0	UBQLN1->chr9:86274878-86323118:-,ubiquilin_1,SLC28A3->chr9:86890372-86955672:-,solute_carrier_family_28_member_3	TC71_BONE	1	1	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	AL136376.1--RPS28	3	0	AL136376.1	2362	chr1:116915870:-	RPS28	5709	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	TC71_BONE	1	1	0.0355	TRUE	0	0	0	12	0	TRUE	ACH-000424
TC71_BONE	PABPC1--RPS28	3	0	PABPC1	2022	chr8:101734016:-	RPS28	18700	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	TC71_BONE	1	1	0.0355	TRUE	0	0	0	6	0	TRUE	ACH-000424
TC71_BONE	TBL1XR1--RP11-708B6.2	2	1	TBL1XR1	4339	chr3:176849151:-	RP11-708B6.2	34615	chr11:109383451:-	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0237	0.0118	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-708B6.2->chr11:109225812-109454633:-	TC71_BONE	0.13	1	0.0355	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	CTD-2017D11.1--URI1	2	0	CTD-2017D11.1	2273	chr19:24229081:+	URI1	20745	chr19:30476130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	CTD-2017D11.1->chr19:24216247-24249711:+,URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+	TC71_BONE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	FAM69A--SCP2	2	0	FAM69A	1125	chr1:93426933:-	SCP2	16139	chr1:53427175:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	FAM69A->chr1:93307724-93427057:-,family_with_sequence_similarity_69_member_A,SCP2->chr1:53392901-53517375:+,sterol_carrier_protein_2	TC71_BONE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	RCC1--HNRNPR	2	0	RCC1	2175	chr1:28834672:+	HNRNPR	20007	chr1:23667510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R	TC71_BONE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	STARD13--LHFP	2	0	STARD13	6682	chr13:33779956:-	LHFP	34887	chr13:39952663:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-,LHFP->Oncogene{Bushman},chr13:39917029-40177665:-,lipoma_HMGIC_fusion_partner	TC71_BONE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	DNAJC3--LINC00355	1	3	DNAJC3	4510	chr13:96377506:+	LINC00355	24110	chr13:64564333:-	ONLY_REF_SPLICE	YES	16	9	0.2	0.31	0.0118	0.0355	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355	TC71_BONE	0.2	0.31	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	MRVI1-AS1--RNF141	1	1	MRVI1-AS1	1271	chr11:10563089:+	RNF141	12338	chr11:10555752:-	ONLY_REF_SPLICE	YES	10	19	0.17	0.1	0.0118	0.0118	LOCAL_INVERSION:+:-:[42],MRVI1-AS1->MRVI1_antisense_RNA_1,chr11:10562819-10621479:+,RNF141->chr11:10533225-10562777:-,ring_finger_protein_141	TC71_BONE	0.1	0.17	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	TBL1XR1--RP11-708B6.2	1	1	TBL1XR1	1353	chr3:176914909:-	RP11-708B6.2	34615	chr11:109383451:-	ONLY_REF_SPLICE	YES	9	0	0.18	1	0.0118	0.0118	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-708B6.2->chr11:109225812-109454633:-	TC71_BONE	0.18	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	TBL1XR1--RP11-708B6.2	1	1	TBL1XR1	8641	chr3:176797615:-	RP11-708B6.2	34615	chr11:109383451:-	ONLY_REF_SPLICE	YES	31	0	0.06	1	0.0118	0.0118	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-708B6.2->chr11:109225812-109454633:-	TC71_BONE	0.06	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	YES1--RP11-672L10.3	1	1	YES1	1163	chr18:812385:-	RP11-672L10.3	21545	chr18:894696:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0118	0.0118	LOCAL_REARRANGEMENT:-:[81889],YES1->Oncogene{Bushman},YES_proto-oncogene_1,_Src_family_tyrosine_kinase,chr18:721588-812547:-,RP11-672L10.3->chr18:894436-907681:-	TC71_BONE	0.67	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000424
BICR31_UPPER_AERODIGESTIVE_TRACT	PACSIN2--ST13	604	124	PACSIN2	1125	chr22:43411027:-	ST13	29753	chr22:41246884:-	ONLY_REF_SPLICE	YES	64	579	0.92	0.56	5.3404	1.0964	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	BICR31_UPPER_AERODIGESTIVE_TRACT	0.56	0.92	6.4368	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	NPC1--RP11-449H11.1	322	100	NPC1	7653	chr18:21141324:-	RP11-449H11.1	39439	chr16:25098044:-	ONLY_REF_SPLICE	YES	187	3	0.69	0.99	2.847	0.8842	NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,RP11-449H11.1->chr16:25096913-25122876:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.69	0.99	3.7312	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MPZL3--MPZL2	135	21	MPZL3	1129	chr11:118122937:-	MPZL2	14404	chr11:118133812:-	ONLY_REF_SPLICE	YES	11	353	0.93	0.31	1.1936	0.1857	GTEx&tcga_normals:5/3694=0.14%,HGNC_GENEFAM,PROTCLUST,{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[1053],MPZL3->chr11:118097409-118123065:-,myelin_protein_zero_like_3,MPZL2->chr11:118124118-118135251:-,myelin_protein_zero_like_2	BICR31_UPPER_AERODIGESTIVE_TRACT	0.31	0.93	1.3793	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	NPC1--RP11-449H11.1	69	12	NPC1	7653	chr18:21141324:-	RP11-449H11.1	40390	chr16:25097093:-	ONLY_REF_SPLICE	YES	187	2	0.3	0.98	0.6101	0.1061	NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,RP11-449H11.1->chr16:25096913-25122876:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.3	0.98	0.7162	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	UNK--ITGB4	34	8	UNK	1385	chr17:73781065:+	ITGB4	46134	chr17:73750657:+	ONLY_REF_SPLICE	YES	49	374	0.46	0.1	0.3006	0.0707	LOCAL_REARRANGEMENT:+:[26782],UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	BICR31_UPPER_AERODIGESTIVE_TRACT	0.1	0.46	0.3713	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	ALDOA--KRT17	30	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2653	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.2653	TRUE	0	0	0	10	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RAD18--FANCD2	23	3	RAD18	2521	chr3:9000604:-	FANCD2	48892	chr3:10114937:+	ONLY_REF_SPLICE	YES	134	235	0.16	0.1	0.2034	0.0265	{Klijn_CCL:Head-Neck=1},RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.1	0.16	0.2299	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	PACSIN2--ST13	8	62	PACSIN2	1125	chr22:43411027:-	ST13	30811	chr22:41244373:-	ONLY_REF_SPLICE	YES	64	495	0.52	0.12	0.0707	0.5482	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	BICR31_UPPER_AERODIGESTIVE_TRACT	0.12	0.52	0.6189	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP5-1110E20.1--KRT20	23	0	RP5-1110E20.1	1061	chr17:39007112:+	KRT20	7883	chr17:39037022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2034	0	LOCAL_INVERSION:+:-:[12659],RP5-1110E20.1->chr17:39007052-39019534:+,KRT20->chr17:39032193-39041479:-,keratin_20	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.2034	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MPZL3--MPZL2	10	21	MPZL3	1129	chr11:118122937:-	MPZL2	13178	chr11:118135038:-	INCL_NON_REF_SPLICE	YES	11	11	0.74	0.74	0.0884	0.1857	GTEx&tcga_normals:5/3694=0.14%,HGNC_GENEFAM,PROTCLUST,{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[1053],MPZL3->chr11:118097409-118123065:-,myelin_protein_zero_like_3,MPZL2->chr11:118124118-118135251:-,myelin_protein_zero_like_2	BICR31_UPPER_AERODIGESTIVE_TRACT	0.74	0.74	0.2741	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	PACSIN2--ST13	6	30	PACSIN2	1125	chr22:43411027:-	ST13	31887	chr22:41240913:-	ONLY_REF_SPLICE	YES	64	413	0.36	0.08	0.0531	0.2653	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	BICR31_UPPER_AERODIGESTIVE_TRACT	0.08	0.36	0.3184	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	OSBPL1A--ROCK1	10	4	OSBPL1A	2434	chr18:21957377:-	ROCK1	64768	chr18:18559965:-	ONLY_REF_SPLICE	YES	60	44	0.19	0.24	0.0884	0.0354	OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A,ROCK1->Rho_associated_coiled-coil_containing_protein_kinase_1,chr18:18526867-18691812:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.19	0.24	0.1238	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	IGFBP7--KRT17	10	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0884	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0884	TRUE	0	0	0	9	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	ARMC9--LRRFIP1	9	3	ARMC9	25522	chr2:232160966:+	LRRFIP1	43619	chr2:238617187:+	ONLY_REF_SPLICE	YES	6	47	0.67	0.2	0.0796	0.0265	{Klijn_CCL:Head-Neck=1},ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1	BICR31_UPPER_AERODIGESTIVE_TRACT	0.2	0.67	0.1061	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	DYNC2H1--SLC36A4	8	1	DYNC2H1	87977	chr11:103306760:+	SLC36A4	98195	chr11:92918980:-	ONLY_REF_SPLICE	YES	9	40	0.5	0.18	0.0707	0.0088	DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,SLC36A4->chr11:92877341-92931130:-,solute_carrier_family_36_member_4	BICR31_UPPER_AERODIGESTIVE_TRACT	0.18	0.5	0.0795	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP3-449O17.1--SHANK3	7	5	RP3-449O17.1	10530	chr22:38757404:-	SHANK3	24164	chr22:51117197:+	ONLY_REF_SPLICE	YES	4	5	0.75	0.71	0.0619	0.0442	RP3-449O17.1->chr22:38731767-38794934:-,SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.71	0.75	0.1061	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP3-449O17.1--SHANK3	7	3	RP3-449O17.1	5950	chr22:38776375:-	SHANK3	24164	chr22:51117197:+	ONLY_REF_SPLICE	YES	22	5	0.31	0.67	0.0619	0.0265	RP3-449O17.1->chr22:38731767-38794934:-,SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.31	0.67	0.0884	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	SHANK2--RP11-501O2.5	7	1	SHANK2	23844	chr11:70742606:-	RP11-501O2.5	63802	chr3:148006722:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0619	0.0088	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,RP11-501O2.5->chr3:147998678-148117743:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.0707	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	CEP192--CLUL1	4	2	CEP192	38749	chr18:13100511:+	CLUL1	52321	chr18:606978:+	ONLY_REF_SPLICE	YES	18	1	0.25	0.86	0.0354	0.0177	CEP192->centrosomal_protein_192,chr18:12991361-13125051:+,CLUL1->chr18:596988-650334:+,clusterin_like_1	BICR31_UPPER_AERODIGESTIVE_TRACT	0.25	0.86	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	IGFBP7--KRT17	4	0	IGFBP7	1116	chr4:57976436:-	KRT17	10574	chr17:39780796:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0354	TRUE	0	0	0	9	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	ZNF44--PSPC1	2	2	ZNF44	5673	chr19:12385788:-	PSPC1	36692	chr13:20251963:-	ONLY_REF_SPLICE	YES	11	13	0.27	0.24	0.0177	0.0177	ZNF44->chr19:12335501-12405702:-,zinc_finger_protein_44,PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	BICR31_UPPER_AERODIGESTIVE_TRACT	0.24	0.27	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	EPS8L2--CHID1	2	0	EPS8L2	6547	chr11:710486:+	CHID1	23096	chr11:904859:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	EPS8L2->EPS8_like_2,chr11:694438-727727:+,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP3-449O17.1--SHANK3	1	3	RP3-449O17.1	7229	chr22:38765991:-	SHANK3	24164	chr22:51117197:+	ONLY_REF_SPLICE	NO	23	5	0.15	0.44	0.0088	0.0265	RP3-449O17.1->chr22:38731767-38794934:-,SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.15	0.44	0.0353	TRUE	0	0	0	1	0	TRUE	ACH-000228
D341MED_CENTRAL_NERVOUS_SYSTEM	HKR1--AC074286.1	6	0	HKR1	6449	chr19:37815167:+	AC074286.1	32222	chr2:178186965:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0659	0	HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+,AC074286.1->chr2:178148236-178257419:-	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0659	TRUE	0	3	0	2	3	TRUE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	ZFAT--TMEM71	4	2	ZFAT	7027	chr8:135649704:-	TMEM71	34511	chr8:133771161:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.044	0.022	ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing,TMEM71->chr8:133697253-133772958:-,transmembrane_protein_71	D341MED_CENTRAL_NERVOUS_SYSTEM	0.55	1	0.066	TRUE	0	0	0	1	0	TRUE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	PHF20L1--CHMP1A	3	0	PHF20L1	21076	chr8:133829790:+	CHMP1A	44993	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Lung=1,Thyroid=1,Whole_Blood=1},PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	ZFAT--TMEM71	2	2	ZFAT	7027	chr8:135649704:-	TMEM71	37193	chr8:133764243:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.022	0.022	ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing,TMEM71->chr8:133697253-133772958:-,transmembrane_protein_71	D341MED_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	ZFAT--TMEM71	2	2	ZFAT	7027	chr8:135649704:-	TMEM71	36132	chr8:133769540:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.022	0.022	ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing,TMEM71->chr8:133697253-133772958:-,transmembrane_protein_71	D341MED_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	DPF2--EIF3L	2	0	DPF2	2854	chr11:65108544:+	EIF3L	23116	chr22:38266183:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	DPF2->chr11:65101225-65120720:+,double_PHD_fingers_2,EIF3L->chr22:38244875-38285414:+,eukaryotic_translation_initiation_factor_3_subunit_L	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000095
NCIH1299_LUNG	LNPEP--CAST	261	44	LNPEP	1781	chr5:96271878:+	CAST	69709	chr5:96097978:+	ONLY_REF_SPLICE	YES	17	337	0.95	0.48	2.989	0.5039	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1299_LUNG	0.48	0.95	3.4929	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	IPO7--MYH9	131	100	IPO7	23232	chr11:9462208:+	MYH9	58858	chr22:36693060:-	ONLY_REF_SPLICE	YES	429	666	0.35	0.26	1.5002	1.1452	{Klijn_CCL:Lung=1},IPO7->chr11:9406169-9469673:+,importin_7,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	NCIH1299_LUNG	0.26	0.35	2.6454	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	FAM171A2--MYL4	81	51	FAM171A2	2833	chr17:42436947:-	MYL4	14627	chr17:45297270:+	ONLY_REF_SPLICE	YES	37	0	0.78	1	0.9276	0.584	{Klijn_CCL:Lung=1},FAM171A2->chr17:42430583-42441243:-,family_with_sequence_similarity_171_member_A2,MYL4->chr17:45277812-45301045:+,myosin_light_chain_4	NCIH1299_LUNG	0.78	1	1.5116	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	TSPAN4--RPLP2	75	54	TSPAN4	6469	chr11:850367:+	RPLP2	18178	chr11:812535:+	ONLY_REF_SPLICE	YES	527	2684	0.2	0.05	0.8589	0.6184	LOCAL_REARRANGEMENT:+:[29928],TSPAN4->chr11:842808-867116:+,tetraspanin_4,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	NCIH1299_LUNG	0.05	0.2	1.4773	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	CIZ1--SPTAN1	74	25	CIZ1	13699	chr9:130931331:-	SPTAN1	25424	chr9:131339102:+	ONLY_REF_SPLICE	YES	272	197	0.27	0.33	0.8474	0.2863	{Klijn_CCL:Lung=1},CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-,SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1	NCIH1299_LUNG	0.27	0.33	1.1337	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	FRYL--GABRA4	61	30	FRYL	1245	chr4:48782095:-	GABRA4	91878	chr4:46930772:-	ONLY_REF_SPLICE	YES	30	0	0.75	1	0.6986	0.3436	FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,GABRA4->chr4:46920917-46996424:-,gamma-aminobutyric_acid_type_A_receptor_alpha4_subunit	NCIH1299_LUNG	0.75	1	1.0422	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	FAM171A2--MYL4	44	71	FAM171A2	4626	chr17:42433798:-	MYL4	14627	chr17:45297270:+	ONLY_REF_SPLICE	YES	27	0	0.81	1	0.5039	0.8131	{Klijn_CCL:Lung=1},FAM171A2->chr17:42430583-42441243:-,family_with_sequence_similarity_171_member_A2,MYL4->chr17:45277812-45301045:+,myosin_light_chain_4	NCIH1299_LUNG	0.81	1	1.317	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	PLCL2--ITPR1	22	19	PLCL2	2852	chr3:16926865:+	ITPR1	57817	chr3:4752009:+	ONLY_REF_SPLICE	YES	4	8	0.91	0.84	0.2519	0.2176	PLCL2->chr3:16844159-17132086:+,phospholipase_C_like_2,ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1	NCIH1299_LUNG	0.84	0.91	0.4695	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	LNPEP--CAST	14	22	LNPEP	1781	chr5:96271878:+	CAST	70808	chr5:96100925:+	ONLY_REF_SPLICE	YES	17	382	0.68	0.09	0.1603	0.2519	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1299_LUNG	0.09	0.68	0.4122	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	SLC30A7--RP4-549L20.3	16	12	SLC30A7	10458	chr1:101431474:+	RP4-549L20.3	22825	chr1:101360524:+	INCL_NON_REF_SPLICE	YES	16	0	0.64	1	0.1832	0.1374	LOCAL_REARRANGEMENT:+:[720],SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7,RP4-549L20.3->chr1:101360484-101360912:+	NCIH1299_LUNG	0.64	1	0.3206	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	FCGRT--RPL13A	14	6	FCGRT	4317	chr19:50017743:+	RPL13A	15094	chr19:49993107:+	ONLY_REF_SPLICE	YES	86	0	0.19	1	0.1603	0.0687	LOCAL_REARRANGEMENT:+:[14508],FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	NCIH1299_LUNG	0.19	1	0.229	TRUE	0	1	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	FAM171A2--MYL4	14	1	FAM171A2	1279	chr17:42440965:-	MYL4	14627	chr17:45297270:+	ONLY_REF_SPLICE	YES	8	0	0.65	1	0.1603	0.0115	{Klijn_CCL:Lung=1},FAM171A2->chr17:42430583-42441243:-,family_with_sequence_similarity_171_member_A2,MYL4->chr17:45277812-45301045:+,myosin_light_chain_4	NCIH1299_LUNG	0.65	1	0.1718	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	ARID2--KCTD16	12	4	ARID2	2571	chr12:46125097:+	KCTD16	36471	chr5:143585952:+	ONLY_REF_SPLICE	YES	46	0	0.26	1	0.1374	0.0458	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,KCTD16->chr5:143550396-143865249:+,potassium_channel_tetramerization_domain_containing_16	NCIH1299_LUNG	0.26	1	0.1832	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	BDNF--LGR4	11	3	BDNF	6018	chr11:27721711:-	LGR4	19122	chr11:27434407:-	ONLY_REF_SPLICE	YES	26	1	0.35	0.93	0.126	0.0344	BDNF->brain-derived_neurotrophic_factor,chr11:27676440-27743605:-,LGR4->chr11:27387508-27494322:-,leucine-rich_repeat_containing_G_protein-coupled_receptor_4	NCIH1299_LUNG	0.35	0.93	0.1604	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	BDNF--LGR4	10	2	BDNF	4885	chr11:27722844:-	LGR4	19122	chr11:27434407:-	ONLY_REF_SPLICE	YES	12	1	0.5	0.92	0.1145	0.0229	BDNF->brain-derived_neurotrophic_factor,chr11:27676440-27743605:-,LGR4->chr11:27387508-27494322:-,leucine-rich_repeat_containing_G_protein-coupled_receptor_4	NCIH1299_LUNG	0.5	0.92	0.1374	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	LNPEP--CAST	3	22	LNPEP	1781	chr5:96271878:+	CAST	70811	chr5:96100928:+	ONLY_REF_SPLICE	YES	17	378	0.6	0.06	0.0344	0.2519	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1299_LUNG	0.06	0.6	0.2863	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	PPP4R1--CTD-2078B5.2	7	4	PPP4R1	2015	chr18:9614224:-	CTD-2078B5.2	30696	chr5:39521621:+	ONLY_REF_SPLICE	YES	94	0	0.1	1	0.0802	0.0458	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,CTD-2078B5.2->chr5:39520533-39524810:+	NCIH1299_LUNG	0.1	1	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	CAPRIN2--RASSF8	5	8	CAPRIN2	5280	chr12:30893954:-	RASSF8	30075	chr12:26147970:+	ONLY_REF_SPLICE	YES	118	0	0.1	1	0.0573	0.0916	CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-,RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+	NCIH1299_LUNG	0.1	1	0.1489	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	NPEPPS--LUZP4	7	0	NPEPPS	3699	chr17:45623359:+	LUZP4	36689	chrX:114536557:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0802	0	NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+,LUZP4->chrX:114524293-114542121:+,leucine_zipper_protein_4	NCIH1299_LUNG	1	1	0.0802	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	EXD3--EHMT1	5	1	EXD3	1149	chr9:140317566:-	EHMT1	36349	chr9:140605419:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0573	0.0115	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1},EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	NCIH1299_LUNG	0.75	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	CPVL--JAZF1	4	2	CPVL	8001	chr7:29160509:-	JAZF1	28211	chr7:28031600:-	ONLY_REF_SPLICE	YES	156	7	0.04	0.46	0.0458	0.0229	{Klijn_CCL:Lung=1},CPVL->carboxypeptidase,_vitellogenic_like,chr7:29034847-29235067:-,JAZF1->JAZF_zinc_finger_1,Oncogene{Bushman},chr7:27870192-28220362:-	NCIH1299_LUNG	0.04	0.46	0.0687	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	CAPRIN2--RASSF8	3	2	CAPRIN2	5280	chr12:30893954:-	RASSF8	36062	chr12:26208169:+	ONLY_REF_SPLICE	YES	118	9	0.04	0.36	0.0344	0.0229	CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-,RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+	NCIH1299_LUNG	0.04	0.36	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	RAB28--ASTN2	3	2	RAB28	3476	chr4:13475942:-	ASTN2	24723	chr9:119739064:-	ONLY_REF_SPLICE	YES	75	0	0.06	1	0.0344	0.0229	RAB28->RAB28,_member_RAS_oncogene_family,chr4:13362978-13485989:-,ASTN2->Oncogene{Bushman},astrotactin_2,chr9:119187504-120177348:-	NCIH1299_LUNG	0.06	1	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	CAPRIN2--RASSF8	2	5	CAPRIN2	5280	chr12:30893954:-	RASSF8	32255	chr12:26173078:+	ONLY_REF_SPLICE	YES	118	11	0.06	0.39	0.0229	0.0573	CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-,RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+	NCIH1299_LUNG	0.06	0.39	0.0802	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	KCTD8--SULT1E1	3	1	KCTD8	2245	chr4:44449580:-	SULT1E1	17198	chr4:70707824:-	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0344	0.0115	KCTD8->chr4:44175926-44450824:-,potassium_channel_tetramerization_domain_containing_8,SULT1E1->chr4:70676498-70725870:-,sulfotransferase_family_1E_member_1	NCIH1299_LUNG	0.8	1	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	FAF1--GBP5	3	0	FAF1	1497	chr1:51425439:-	GBP5	40092	chr1:89728084:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,GBP5->chr1:89724633-89738544:-,guanylate_binding_protein_5	NCIH1299_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	IST1--NFE2L2	3	0	IST1	7895	chr16:71929492:+	NFE2L2	33358	chr2:178098999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	IST1->IST1,_ESCRT-III_associated_factor,chr16:71879899-71962913:+,NFE2L2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:178092323-178257425:-,nuclear_factor,_erythroid_2_like_2	NCIH1299_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	MYL6--EEF1D	3	0	MYL6	2462	chr12:56553406:+	EEF1D	20463	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	GTEx&tcga_normals:1/3694=0.03%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH1299_LUNG	1	1	0.0344	TRUE	0	0	0	2	0	TRUE	ACH-000510
NCIH1299_LUNG	ARID2--KCTD16	2	1	ARID2	2571	chr12:46125097:+	KCTD16	38629	chr5:143853223:+	ONLY_REF_SPLICE	YES	46	7	0.06	0.3	0.0229	0.0115	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,KCTD16->chr5:143550396-143865249:+,potassium_channel_tetramerization_domain_containing_16	NCIH1299_LUNG	0.06	0.3	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	KCTD8--SULT1E1	2	1	KCTD8	2245	chr4:44449580:-	SULT1E1	14922	chr4:70713510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0.0115	KCTD8->chr4:44175926-44450824:-,potassium_channel_tetramerization_domain_containing_8,SULT1E1->chr4:70676498-70725870:-,sulfotransferase_family_1E_member_1	NCIH1299_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	SPOP--TEX28	1	5	SPOP	1302	chr17:47755295:-	TEX28	24600	chrX:153520558:-	ONLY_REF_SPLICE	YES	76	0	0.07	1	0.0115	0.0573	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,TEX28->chrX:153498930-153523796:-,testis_expressed_28	NCIH1299_LUNG	0.07	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	SPOP--TEX28	1	5	SPOP	2424	chr17:47753257:-	TEX28	24600	chrX:153520558:-	ONLY_REF_SPLICE	YES	97	0	0.06	1	0.0115	0.0573	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,TEX28->chrX:153498930-153523796:-,testis_expressed_28	NCIH1299_LUNG	0.06	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	ACTR3--TTL	2	0	ACTR3	1364	chr2:114647900:+	TTL	35783	chr2:113286258:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	ACTR3->ARP3_actin-related_protein_3_homolog_(yeast),chr2:114647537-114720173:+,TTL->Oncogene{Bushman},chr2:113239731-113299316:+,tubulin_tyrosine_ligase	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	BDH1--DLG1	2	0	BDH1	2411	chr3:197282652:-	DLG1	36820	chr3:196869639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx&tcga_normals:1/3694=0.03%,BDH1->3-hydroxybutyrate_dehydrogenase,_type_1,chr3:197236654-197300194:-,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	C8orf44--KDM1A	2	0	C8orf44	1087	chr8:67579936:+	KDM1A	32120	chr1:23409672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	C8orf44->chr8:67579850-67597799:+,chromosome_8_open_reading_frame_44,KDM1A->chr1:23345941-23410182:+,lysine_demethylase_1A	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	CAPRIN2--RASSF8	1	4	CAPRIN2	4193	chr12:30904005:-	RASSF8	30075	chr12:26147970:+	ONLY_REF_SPLICE	NO	125	0	0.04	1	0.0115	0.0458	CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-,RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+	NCIH1299_LUNG	0.04	1	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	CKAP5--MTCH2	2	0	CKAP5	9972	chr11:46829581:-	MTCH2	56997	chr11:47640471:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	FAF1--GBP5	2	0	FAF1	1497	chr1:51425439:-	GBP5	39708	chr1:89728468:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,GBP5->chr1:89724633-89738544:-,guanylate_binding_protein_5	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	LINC00472--RP4-583P15.15	2	0	LINC00472	1704	chr6:72129769:-	RP4-583P15.15	13505	chr20:62364571:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LINC00472->chr6:72054047-72130472:-,long_intergenic_non-protein_coding_RNA_472,RP4-583P15.15->chr20:62340216-62370456:+	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	LSM7--C21orf58	2	0	LSM7	1234	chr19:2328386:-	C21orf58	17160	chr21:47731481:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LSM7->LSM7_homolog,_U6_small_nuclear_RNA_and_mRNA_degradation_associated,chr19:2321516-2328619:-,C21orf58->chr21:47720095-47743789:-,chromosome_21_open_reading_frame_58	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	LUC7L2--TRIM24	2	0	LUC7L2	5589	chr7:139086993:+	TRIM24	24075	chr7:138223402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+,TRIM24->Oncogene{Bushman},chr7:138145079-138274738:+,tripartite_motif_containing_24	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	MPP5--CRNDE	2	0	MPP5	18705	chr14:67790529:+	CRNDE	29005	chr16:54957562:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5,CRNDE->chr16:54952775-54963101:-,colorectal_neoplasia_differentially_expressed_(non-protein_coding)	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	RBM6--FAM192A	2	0	RBM6	3185	chr3:50000118:+	FAM192A	39832	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	RHNO1--DHDDS	2	0	RHNO1	2025	chr12:2986448:+	DHDDS	11322	chr1:26759382:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RHNO1->RAD9-HUS1-RAD1_interacting_nuclear_orphan_1,chr12:2985424-2998626:+,DHDDS->chr1:26758773-26797785:+,dehydrodolichyl_diphosphate_synthase_subunit	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	TSPAN17--G3BP1	2	0	TSPAN17	1316	chr5:176074703:+	G3BP1	15337	chr5:151166133:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	TSPAN17->chr5:176074388-176086058:+,tetraspanin_17,G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	BDNF--LGR4	1	3	BDNF	6000	chr11:27721729:-	LGR4	19122	chr11:27434407:-	ONLY_REF_SPLICE	YES	19	1	0.17	0.8	0.0115	0.0344	BDNF->brain-derived_neurotrophic_factor,chr11:27676440-27743605:-,LGR4->chr11:27387508-27494322:-,leucine-rich_repeat_containing_G_protein-coupled_receptor_4	NCIH1299_LUNG	0.17	0.8	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	SPOP--TEX28	1	2	SPOP	1302	chr17:47755295:-	TEX28	26790	chrX:153516762:-	ONLY_REF_SPLICE	YES	76	0	0.04	1	0.0115	0.0229	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,TEX28->chrX:153498930-153523796:-,testis_expressed_28	NCIH1299_LUNG	0.04	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000510
CAL51_BREAST	C17orf75--NME2	2	0	C17orf75	7662	chr17:30661794:-	NME2	20048	chr17:49244188:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	C17orf75->chr17:30651584-30677042:-,chromosome_17_open_reading_frame_75,NME2->NME/NM23_nucleoside_diphosphate_kinase_2,chr17:49230951-49249105:+	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	COL4A2--PHGDH	2	0	COL4A2	22951	chr13:111114731:+	PHGDH	55874	chr1:120263793:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2,PHGDH->chr1:120202421-120286838:+,phosphoglycerate_dehydrogenase	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	KIAA1524--IFT122	2	0	KIAA1524	1371	chr3:108308121:-	IFT122	49321	chr3:129214289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	KIAA1524->KIAA1524,Oncogene{Bushman},chr3:108268716-108308491:-,IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	PLBD1--SCAF11	2	0	PLBD1	6045	chr12:14693698:-	SCAF11	26783	chr12:46345510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	PLBD1->chr12:14656595-14721283:-,phospholipase_B_domain_containing_1,SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	SIPA1L3--ZNF682	2	0	SIPA1L3	16017	chr19:38610522:+	ZNF682	40633	chr19:20141922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,ZNF682->chr19:20107867-20150315:-,zinc_finger_protein_682	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	TIA1--LIG3	2	0	TIA1	7882	chr2:70451686:-	LIG3	25447	chr17:33317982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	TIA1->TIA1_cytotoxic_granule-associated_RNA_binding_protein,chr2:70436576-70475792:-,LIG3->DNA_ligase_3,chr17:33307513-33332083:+	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	UBR5--EIF3E	2	0	UBR5	1669	chr8:103424401:-	EIF3E	72291	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	RP1-315G1.3--MIF4GD	1	1	RP1-315G1.3	1153	chrX:123095039:-	MIF4GD	6309	chr17:73266326:-	ONLY_REF_SPLICE	YES	1	19	0.67	0.1	0.0123	0.0123	RP1-315G1.3->chrX:123093083-123095191:-,MIF4GD->MIF4G_domain_containing,chr17:73262309-73267308:-	CAL51_BREAST	0.1	0.67	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000856
SNU16_STOMACH	PVT1--SLC1A2	357	401	PVT1	18060	chr8:129022690:+	SLC1A2	32841	chr11:35339063:-	ONLY_REF_SPLICE	YES	58	6	0.93	0.99	4.2764	4.8035	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNU16_STOMACH	0.93	0.99	9.0799	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	RP11-89K10.1--POU5F1B	329	52	RP11-89K10.1	1057	chr8:127570176:+	POU5F1B	14002	chr8:128427133:+	INCL_NON_REF_SPLICE	YES	9	13	0.98	0.97	3.941	0.6229	RP11-89K10.1->chr8:127570120-127725660:+,POU5F1B->POU_class_5_homeobox_1B,chr8:128426535-128432311:+	SNU16_STOMACH	0.97	0.98	4.5639	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	RP11-89K10.1--RP11-382A18.2	246	50	RP11-89K10.1	1057	chr8:127570176:+	RP11-382A18.2	13411	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	9	0	0.97	1	2.9468	0.5989	RP11-89K10.1->chr8:127570120-127725660:+,RP11-382A18.2->chr8:128351519-128404876:+	SNU16_STOMACH	0.97	1	3.5457	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	PVT1--SLC1A2	29	414	PVT1	18060	chr8:129022690:+	SLC1A2	31722	chr11:35344226:-	ONLY_REF_SPLICE	YES	58	0	0.88	1	0.3474	4.9592	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNU16_STOMACH	0.88	1	5.3066	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	PVT1--SLC1A2	34	182	PVT1	17334	chr8:129021964:+	SLC1A2	32841	chr11:35339063:-	ONLY_REF_SPLICE	YES	111	6	0.66	0.97	0.4073	2.1801	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNU16_STOMACH	0.66	0.97	2.5874	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	PVT1--SLC1A2	42	76	PVT1	13955	chr8:129001537:+	SLC1A2	32841	chr11:35339063:-	ONLY_REF_SPLICE	YES	190	6	0.38	0.95	0.5031	0.9104	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNU16_STOMACH	0.38	0.95	1.4135	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	CMIP--DYNLRB2	43	40	CMIP	23470	chr16:81733406:+	DYNLRB2	37029	chr16:80577173:+	ONLY_REF_SPLICE	YES	197	0	0.3	1	0.5151	0.4791	{Klijn_CCL:Stomach=1},CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+,DYNLRB2->chr16:80574631-80584657:+,dynein_light_chain_roadblock-type_2	SNU16_STOMACH	0.3	1	0.9942	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	PVT1--SLC1A2	3	77	PVT1	13955	chr8:129001537:+	SLC1A2	31722	chr11:35344226:-	ONLY_REF_SPLICE	YES	190	0	0.3	1	0.0359	0.9224	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNU16_STOMACH	0.3	1	0.9583	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	CSNK2A2--RP11-679B19.2	16	17	CSNK2A2	6669	chr16:58208355:-	RP11-679B19.2	22425	chr16:79246798:-	ONLY_REF_SPLICE	YES	183	2	0.15	0.94	0.1917	0.2036	CSNK2A2->casein_kinase_2_alpha_2,chr16:58191811-58231824:-,RP11-679B19.2->chr16:79246608-79263350:-	SNU16_STOMACH	0.15	0.94	0.3953	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	PRR5L--AC015922.5	12	3	PRR5L	19160	chr11:36424928:+	AC015922.5	38221	chr17:15753738:+	ONLY_REF_SPLICE	YES	245	0	0.06	1	0.1437	0.0359	PRR5L->chr11:36317838-36486754:+,proline_rich_5_like,AC015922.5->chr17:15732683-15767467:+	SNU16_STOMACH	0.06	1	0.1796	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	NPM1P4--NCL	7	0	NPM1P4	1488	chr13:28270854:-	NCL	10591	chr2:232325485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	SNU16_STOMACH	1	1	0.0839	TRUE	0	0	0	3	0	TRUE	ACH-000581
SNU16_STOMACH	NPM1P4--NCL	6	0	NPM1P4	1484	chr13:28270858:-	NCL	10584	chr2:232325492:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	SNU16_STOMACH	1	1	0.0719	TRUE	0	0	0	3	0	TRUE	ACH-000581
SNU16_STOMACH	ZC3H12D--UST	3	1	ZC3H12D	4889	chr6:149782967:-	UST	17858	chr6:149208122:+	ONLY_REF_SPLICE	YES	0	8	1	0.33	0.0359	0.012	{Klijn_CCL:Stomach=1},ZC3H12D->chr6:149768794-149806197:-,zinc_finger_CCCH-type_containing_12D,UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase	SNU16_STOMACH	0.33	1	0.0479	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	IRX5--CDYL2	3	0	IRX5	3995	chr16:54967768:+	CDYL2	9836	chr16:80719026:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	IRX5->chr16:54964774-54968397:+,iroquois_homeobox_5,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	SNU16_STOMACH	1	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	NPM1P4--NCL	3	0	NPM1P4	1488	chr13:28270854:-	NCL	9681	chr2:232326395:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	SNU16_STOMACH	1	1	0.0359	TRUE	0	0	0	3	0	TRUE	ACH-000581
SNU16_STOMACH	BLCAP--TGIF2	2	0	BLCAP	1139	chr20:36156195:-	TGIF2	18097	chr20:35207144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	BLCAP->Oncogene{Bushman},bladder_cancer_associated_protein,chr20:36120874-36156333:-,TGIF2->TGFB_induced_factor_homeobox_2,chr20:35201891-35222353:+	SNU16_STOMACH	1	1	0.024	TRUE	0	2	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	ELMOD3--WBSCR22	2	0	ELMOD3	1777	chr2:85582293:+	WBSCR22	22038	chr7:73100966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	ELMOD3->ELMO_domain_containing_3,chr2:85581517-85618875:+,WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+	SNU16_STOMACH	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	EXPH5--GNAS	2	0	EXPH5	1321	chr11:108464145:-	GNAS	38571	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	EXPH5->chr11:108376158-108464465:-,exophilin_5,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU16_STOMACH	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	FAM122B--NDUFB2	2	0	FAM122B	8335	chrX:133915851:-	NDUFB2	22114	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	FAM122B->chrX:133903596-133931262:-,family_with_sequence_similarity_122B,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	SNU16_STOMACH	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	XKR9--LACTB2	2	0	XKR9	1174	chr8:71581773:+	LACTB2	20001	chr8:71556478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	LOCAL_INVERSION:+:-:[191],XKR9->XK_related_9,chr8:71581600-71702606:+,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	SNU16_STOMACH	1	1	0.024	TRUE	0	11	0	8	7	TRUE	ACH-000581
59M_OVARY	RB1CC1--CTD-3025N20.2	348	100	RB1CC1	2687	chr8:53626635:-	CTD-3025N20.2	31484	chr8:66447099:-	ONLY_REF_SPLICE	YES	35	0	0.93	1	3.9972	1.1486	RB1CC1->Oncogene{Bushman},RB1_inducible_coiled-coil_1,chr8:53535016-53658403:-,CTD-3025N20.2->chr8:66439243-66475015:-	59M_OVARY	0.93	1	5.1458	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	SPIDR--FAM49B	103	68	SPIDR	7740	chr8:48206619:+	FAM49B	55678	chr8:130867993:-	ONLY_REF_SPLICE	YES	75	195	0.7	0.47	1.1831	0.7811	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	59M_OVARY	0.47	0.7	1.9642	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	FAM60A--DENND5B	81	8	FAM60A	2035	chr12:31478958:-	DENND5B	40679	chr12:31555577:-	ONLY_REF_SPLICE	YES	54	26	0.62	0.77	0.9304	0.0919	LOCAL_REARRANGEMENT:-:[55165],FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-	59M_OVARY	0.62	0.77	1.0223	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	SPIDR--FAM49B	74	33	SPIDR	6576	chr8:48203726:+	FAM49B	55678	chr8:130867993:-	ONLY_REF_SPLICE	YES	73	195	0.59	0.35	0.85	0.379	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	59M_OVARY	0.35	0.59	1.229	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	ARID1A--ATPIF1	56	7	ARID1A	2508	chr1:27024031:+	ATPIF1	29461	chr1:28573100:+	ONLY_REF_SPLICE	YES	5	0	0.93	1	0.6432	0.0804	ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,ATPIF1->ATPase_inhibitory_factor_1,chr1:28562620-28573417:+	59M_OVARY	0.93	1	0.7236	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	HNRNPR--TCEA3	35	7	HNRNPR	8792	chr1:23644976:-	TCEA3	31793	chr1:23713912:-	ONLY_REF_SPLICE	YES	410	18	0.09	0.7	0.402	0.0804	LOCAL_REARRANGEMENT:-:[36725],HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TCEA3->chr1:23707554-23751233:-,transcription_elongation_factor_A3	59M_OVARY	0.09	0.7	0.4824	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	ARID3A--TMEM259	23	8	ARID3A	6959	chr19:960164:+	TMEM259	22250	chr19:1014472:-	ONLY_REF_SPLICE	YES	3	47	0.91	0.4	0.2642	0.0919	LOCAL_INVERSION:+:-:[33708],ARID3A->AT-rich_interaction_domain_3A,chr19:925781-975939:+,TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259	59M_OVARY	0.4	0.91	0.3561	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	YWHAE--PITPNA	18	4	YWHAE	1332	chr17:1303341:-	PITPNA	27439	chr17:1424939:-	ONLY_REF_SPLICE	YES	1782	130	0.01	0.14	0.2068	0.0459	{Klijn_CCL:Lung=1},YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,PITPNA->chr17:1421012-1466110:-,phosphatidylinositol_transfer_protein_alpha	59M_OVARY	0.01	0.14	0.2527	TRUE	0	2	0	1	2	TRUE	ACH-000520
59M_OVARY	VIM--FTH1	11	0	VIM	2124	chr10:17271381:+	FTH1	12402	chr11:61734935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1263	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	59M_OVARY	1	1	0.1263	TRUE	0	0	0	6	0	TRUE	ACH-000520
59M_OVARY	CDK8--LATS2	9	7	CDK8	4959	chr13:26928017:+	LATS2	20501	chr13:21620369:-	ONLY_REF_SPLICE	YES	31	6	0.34	0.73	0.1034	0.0804	PROTCLUST,CDK8->ArcherDX_panel,FoundationOne_panel,chr13:26828276-26979375:+,cyclin-dependent_kinase_8,LATS2->Oncogene{Bushman},chr13:21547171-21635686:-,large_tumor_suppressor_kinase_2	59M_OVARY	0.34	0.73	0.1838	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	CAPZB--FTH1	9	0	CAPZB	1113	chr1:19811954:-	FTH1	19341	chr11:61734932:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1034	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	59M_OVARY	1	1	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	RAI1--NOL4	8	2	RAI1	1321	chr17:17585107:+	NOL4	28644	chr18:31709984:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0919	0.023	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	59M_OVARY	0.91	1	0.1149	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	RIPK2--LINC00534	8	2	RIPK2	10962	chr8:90796367:+	LINC00534	19059	chr8:91258408:+	ONLY_REF_SPLICE	YES	153	0	0.06	1	0.0919	0.023	RIPK2->chr8:90769975-90803291:+,receptor_interacting_serine/threonine_kinase_2,LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534	59M_OVARY	0.06	1	0.1149	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	SPIDR--FAM49B	3	17	SPIDR	7740	chr8:48206619:+	FAM49B	56843	chr8:130866589:-	ONLY_REF_SPLICE	YES	75	200	0.21	0.09	0.0345	0.1953	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	59M_OVARY	0.09	0.21	0.2298	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	EIF1--PPIA	7	0	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0804	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	59M_OVARY	1	1	0.0804	TRUE	0	0	0	7	0	TRUE	ACH-000520
59M_OVARY	RCC1--FAM192A	5	0	RCC1	2175	chr1:28834672:+	FAM192A	24869	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0574	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	59M_OVARY	1	1	0.0574	TRUE	0	3	0	3	0	TRUE	ACH-000520
59M_OVARY	JSRP1--SUMO2	4	0	JSRP1	1202	chr19:2269557:-	SUMO2	10431	chr17:73179054:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	59M_OVARY	1	1	0.0459	TRUE	0	0	0	2	0	TRUE	ACH-000520
59M_OVARY	YWHAE--INPP5K	4	0	YWHAE	1332	chr17:1303341:-	INPP5K	16682	chr17:1417273:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0459	0	LOCAL_REARRANGEMENT:-:[94193],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,INPP5K->Oncogene{Bushman},chr17:1397865-1420182:-,inositol_polyphosphate-5-phosphatase_K	59M_OVARY	1	1	0.0459	TRUE	0	1	0	1	1	TRUE	ACH-000520
59M_OVARY	GOLGA7--GAPDH	3	0	GOLGA7	7138	chr8:41367163:+	GAPDH	15187	chr12:6646829:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	GOLGA7->chr8:41347915-41368499:+,golgin_A7,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	59M_OVARY	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	HNRNPR--TCEA3	3	0	HNRNPR	5264	chr1:23660011:-	TCEA3	31793	chr1:23713912:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:-:[36725],HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TCEA3->chr1:23707554-23751233:-,transcription_elongation_factor_A3	59M_OVARY	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	RPLP0--SUN2	3	0	RPLP0	2885	chr12:120637154:-	SUN2	14731	chr22:39146960:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0,SUN2->Sad1_and_UNC84_domain_containing_2,chr22:39130730-39190148:-	59M_OVARY	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	VIM--FTH1	3	0	VIM	2101	chr10:17271358:+	FTH1	12344	chr11:61734993:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	59M_OVARY	1	1	0.0345	TRUE	0	0	0	6	0	TRUE	ACH-000520
59M_OVARY	VIM--FTH1	3	0	VIM	2128	chr10:17271385:+	FTH1	12415	chr11:61734922:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	59M_OVARY	1	1	0.0345	TRUE	0	0	0	6	0	TRUE	ACH-000520
59M_OVARY	EDF1--SLC16A3	2	0	EDF1	3072	chr9:139757358:-	SLC16A3	14119	chr17:80193859:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	EIF3B--MAD1L1	2	0	EIF3B	11446	chr7:2412430:+	MAD1L1	60993	chr7:1855864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	GALNS--ANKRD11	2	0	GALNS	1213	chr16:88923166:-	ANKRD11	54883	chr16:89341599:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase,ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	GAS6-AS1--TFDP1	2	0	GAS6-AS1	1062	chr13:114518664:+	TFDP1	11094	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	59M_OVARY	1	1	0.023	TRUE	0	0	0	4	0	TRUE	ACH-000520
59M_OVARY	RCC1--KRT8	2	0	RCC1	2175	chr1:28834672:+	KRT8	26658	chr12:53295856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,KRT8->chr12:53290977-53343738:-,keratin_8	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	SLC7A5--GSE1	2	0	SLC7A5	8091	chr16:87871451:-	GSE1	22365	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	TSSC2--SPCS3	2	0	TSSC2	2907	chr11:3405514:+	SPCS3	20534	chr4:177243321:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	TSSC2->chr11:3402191-3430208:+,tumor_suppressing_subtransferable_candidate_2_pseudogene,SPCS3->chr4:177241115-177253396:+,signal_peptidase_complex_subunit_3	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	TYMP--MYH9	2	0	TYMP	1153	chr22:50968333:-	MYH9	28693	chr22:36701148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	TYMP->Oncogene{Bushman},chr22:50964181-50968485:-,thymidine_phosphorylase,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	WDR45B--CSNK1D	2	0	WDR45B	2355	chr17:80601825:-	CSNK1D	21664	chr17:80223672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	RAI1--NOL4	1	2	RAI1	3231	chr17:17587017:+	NOL4	28644	chr18:31709984:-	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0115	0.023	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	59M_OVARY	0.75	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	LRRN1--SETMAR	1	1	LRRN1	1483	chr3:3841603:+	SETMAR	13003	chr3:4354582:+	ONLY_REF_SPLICE	YES	0	8	1	0.2	0.0115	0.0115	LRRN1->chr3:3841121-3889387:+,leucine_rich_repeat_neuronal_1,SETMAR->SET_domain_and_mariner_transposase_fusion_gene,chr3:4344988-4359251:+	59M_OVARY	0.2	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
SNU201_CENTRAL_NERVOUS_SYSTEM	LAMP1--PKM	4	0	LAMP1	10141	chr13:113976769:+	PKM	15012	chr15:72523512:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0525	0	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0525	TRUE	0	0	0	3	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	VIM-AS1--ACADVL	4	0	VIM-AS1	1583	chr10:17271402:-	ACADVL	16012	chr17:7127648:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0525	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,ACADVL->acyl-CoA_dehydrogenase,_very_long_chain,chr17:7120444-7128592:+	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	VIM--ACTB	3	0	VIM	2136	chr10:17271393:+	ACTB	15629	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0393	TRUE	0	0	0	9	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	ARHGAP19--RP11-298J20.4	2	0	ARHGAP19	1085	chr10:99052329:-	RP11-298J20.4	24008	chr10:126631026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	ARHGAP19->Rho_GTPase_activating_protein_19,chr10:98978996-99052413:-,RP11-298J20.4->chr10:126605712-126631450:+	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	C20orf112--ASXL1	2	0	C20orf112	16174	chr20:31062404:-	ASXL1	33870	chr20:30954187:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_INVERSION:-:+:[3740],C20orf112->chr20:31030862-31172876:-,ASXL1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},additional_sex_combs_like_1,_transcriptional_regulator,chr20:30946155-31027122:+	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	CBX5--ERI3	2	0	CBX5	1095	chr12:54673792:-	ERI3	26777	chr1:44785416:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CBX5->chr12:54624724-54673886:-,chromobox_5,ERI3->ERI1_exoribonuclease_family_member_3,chr1:44686742-44820932:-	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	CDH2--DDX27	2	0	CDH2	9588	chr18:25591810:-	DDX27	31061	chr20:47841650:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CDH2->cadherin_2,chr18:25530930-25757410:-,DDX27->DEAD-box_helicase_27,chr20:47835884-47860614:+	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	MRPS22--SMARCA2	2	0	MRPS22	6545	chr3:139000677:+	SMARCA2	35404	chr9:2070418:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	MRPS22->chr3:138724648-139076065:+,mitochondrial_ribosomal_protein_S22,SMARCA2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_2,chr9:2015342-2193624:+	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000623
NCIH2087_LUNG	TBC1D32--STK31	216	33	TBC1D32	27616	chr6:121484116:-	STK31	69972	chr7:23826127:+	ONLY_REF_SPLICE	YES	6	7	0.98	0.97	1.95	0.2979	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,STK31->chr7:23749786-23872132:+,serine/threonine_kinase_31	NCIH2087_LUNG	0.97	0.98	2.2479	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	POLB--PLAT	86	14	POLB	1232	chr8:42196203:+	PLAT	23527	chr8:42050729:-	ONLY_REF_SPLICE	YES	214	50	0.32	0.67	0.7764	0.1264	POLB->chr8:42195972-42229326:+,polymerase_(DNA)_beta,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	NCIH2087_LUNG	0.32	0.67	0.9028	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	ATAD2--ANXA13	61	14	ATAD2	1103	chr8:124428488:-	ANXA13	41697	chr8:124714976:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.5507	0.1264	ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,ANXA13->annexin_A13,chr8:124693034-124749647:-	NCIH2087_LUNG	0.99	1	0.6771	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	TPX2--DEFB123	43	29	TPX2	11582	chr20:30366787:+	DEFB123	26070	chr20:30037832:+	ONLY_REF_SPLICE	YES	334	0	0.18	1	0.3882	0.2618	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,DEFB123->chr20:30028322-30038060:+,defensin_beta_123	NCIH2087_LUNG	0.18	1	0.65	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	ADCY9--PTMA	38	0	ADCY9	3210	chr16:4163977:-	PTMA	31554	chr2:232576640:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3431	0	GTEx&tcga_normals:1/3694=0.03%,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH2087_LUNG	1	1	0.3431	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	TBC1D32--STK31	32	10	TBC1D32	27616	chr6:121484116:-	STK31	70302	chr7:23826457:+	ONLY_REF_SPLICE	YES	6	10	0.88	0.81	0.2889	0.0903	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,STK31->chr7:23749786-23872132:+,serine/threonine_kinase_31	NCIH2087_LUNG	0.81	0.88	0.3792	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	TNK2--XXYLT1	32	7	TNK2	2752	chr3:195635356:-	XXYLT1	42384	chr3:194877310:-	ONLY_REF_SPLICE	YES	27	7	0.59	0.85	0.2889	0.0632	TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2,XXYLT1->Oncogene{Bushman},chr3:194789008-194991896:-,xyloside_xylosyltransferase_1	NCIH2087_LUNG	0.59	0.85	0.3521	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	KDM4C--TPD52L3	29	7	KDM4C	12172	chr9:6893232:+	TPD52L3	45773	chr9:6330182:+	ONLY_REF_SPLICE	YES	9	0	0.8	1	0.2618	0.0632	KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,TPD52L3->chr9:6328349-6331900:+,tumor_protein_D52-like_3	NCIH2087_LUNG	0.8	1	0.325	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	PRKD2--ZNF28	26	8	PRKD2	17443	chr19:47184907:-	ZNF28	29131	chr19:53311386:-	ONLY_REF_SPLICE	YES	18	4	0.65	0.89	0.2347	0.0722	PRKD2->chr19:47177532-47220384:-,protein_kinase_D2,ZNF28->chr19:53300662-53360853:-,zinc_finger_protein_28	NCIH2087_LUNG	0.65	0.89	0.3069	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	CD22--GAPDHS	24	2	CD22	2739	chr19:35820133:+	GAPDHS	19261	chr19:36027715:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.2167	0.0181	CD22->CD22_molecule,chr19:35810164-35838258:+,GAPDHS->chr19:36024314-36036218:+,glyceraldehyde-3-phosphate_dehydrogenase,_spermatogenic	NCIH2087_LUNG	0.96	1	0.2348	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MET--CFTR	18	2	MET	5556	chr7:116364303:+	CFTR	56006	chr7:117251635:+	ONLY_REF_SPLICE	YES	432	0	0.04	1	0.1625	0.0181	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CFTR->chr7:117105838-117356025:+,cystic_fibrosis_transmembrane_conductance_regulator	NCIH2087_LUNG	0.04	1	0.1806	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	ASAP1--TRPS1	17	3	ASAP1	24018	chr8:131164982:-	TRPS1	48690	chr8:116713299:-	ONLY_REF_SPLICE	YES	29	0	0.41	1	0.1535	0.0271	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1	NCIH2087_LUNG	0.41	1	0.1806	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MAP3K10--RP11-810K23.10	15	4	MAP3K10	3151	chr19:40704462:+	RP11-810K23.10	14163	chr15:21099104:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.1354	0.0361	MAP3K10->chr19:40697651-40721482:+,mitogen-activated_protein_kinase_kinase_kinase_10,RP11-810K23.10->chr15:21098712-21099309:-	NCIH2087_LUNG	0.86	1	0.1715	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	POLB--PLAT	9	15	POLB	1616	chr8:42196587:+	PLAT	23527	chr8:42050729:-	ONLY_REF_SPLICE	YES	245	50	0.09	0.32	0.0813	0.1354	POLB->chr8:42195972-42229326:+,polymerase_(DNA)_beta,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	NCIH2087_LUNG	0.09	0.32	0.2167	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	TNK2--XXYLT1	9	11	TNK2	2752	chr3:195635356:-	XXYLT1	40036	chr3:194901244:-	ONLY_REF_SPLICE	YES	27	6	0.43	0.77	0.0813	0.0993	TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2,XXYLT1->Oncogene{Bushman},chr3:194789008-194991896:-,xyloside_xylosyltransferase_1	NCIH2087_LUNG	0.43	0.77	0.1806	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	CD22--GAPDHS	9	0	CD22	2739	chr19:35820133:+	GAPDHS	20439	chr19:36029209:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0813	0	CD22->CD22_molecule,chr19:35810164-35838258:+,GAPDHS->chr19:36024314-36036218:+,glyceraldehyde-3-phosphate_dehydrogenase,_spermatogenic	NCIH2087_LUNG	1	1	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	ADCY9--PTMA	8	0	ADCY9	3210	chr16:4163977:-	PTMA	31563	chr2:232576649:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	GTEx&tcga_normals:1/3694=0.03%,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH2087_LUNG	1	1	0.0722	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MITF--ROBO2	5	0	MITF	18495	chr3:70005653:+	ROBO2	34161	chr3:77526565:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	MITF->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:69788586-70017488:+,microphthalmia-associated_transcription_factor,ROBO2->chr3:75955846-77699115:+,roundabout_guidance_receptor_2	NCIH2087_LUNG	1	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	PANX1--CCDC67	5	0	PANX1	2706	chr11:93886796:+	CCDC67	23830	chr11:93127625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0451	0	PANX1->chr11:93862094-93915138:+,pannexin_1,CCDC67->chr11:93063137-93171653:+,coiled-coil_domain_containing_67	NCIH2087_LUNG	1	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	GEMIN7--CLPTM1	4	2	GEMIN7	1835	chr19:45583287:+	CLPTM1	14097	chr19:45480600:+	ONLY_REF_SPLICE	YES	32	87	0.16	0.06	0.0361	0.0181	LOCAL_REARRANGEMENT:+:[85854],GEMIN7->chr19:45582453-45594782:+,gem_nuclear_organelle_associated_protein_7,CLPTM1->chr19:45457842-45496599:+,cleft_lip_and_palate_associated_transmembrane_protein_1	NCIH2087_LUNG	0.06	0.16	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	TBC1D32--STK31	4	0	TBC1D32	27531	chr6:121484201:-	STK31	69972	chr7:23826127:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,STK31->chr7:23749786-23872132:+,serine/threonine_kinase_31	NCIH2087_LUNG	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MAP3K10--RP11-810K23.10	3	1	MAP3K10	1970	chr19:40698620:+	RP11-810K23.10	14163	chr15:21099104:-	INCL_NON_REF_SPLICE	YES	12	0	0.25	1	0.0271	0.009	MAP3K10->chr19:40697651-40721482:+,mitogen-activated_protein_kinase_kinase_kinase_10,RP11-810K23.10->chr15:21098712-21099309:-	NCIH2087_LUNG	0.25	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	ADCY9--PTMA	3	0	ADCY9	3204	chr16:4163983:-	PTMA	31563	chr2:232576649:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx&tcga_normals:1/3694=0.03%,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH2087_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	EIF3B--MAD1L1	3	0	EIF3B	15726	chr7:2416710:+	MAD1L1	60993	chr7:1855864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIH2087_LUNG	1	1	0.0271	TRUE	0	6	0	3	1	TRUE	ACH-000841
NCIH2087_LUNG	EREG--RPS28	3	0	EREG	1117	chr4:75230976:+	RPS28	13469	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	EREG->chr4:75230860-75254468:+,epiregulin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH2087_LUNG	1	1	0.0271	TRUE	0	0	0	3	0	TRUE	ACH-000841
NCIH2087_LUNG	PRKD2--ZNF28	2	1	PRKD2	17443	chr19:47184907:-	ZNF28	32266	chr19:53304955:-	ONLY_REF_SPLICE	YES	18	14	0.14	0.18	0.0181	0.009	PRKD2->chr19:47177532-47220384:-,protein_kinase_D2,ZNF28->chr19:53300662-53360853:-,zinc_finger_protein_28	NCIH2087_LUNG	0.14	0.18	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	C7orf50--EIF3B	2	0	C7orf50	12142	chr7:1040106:-	EIF3B	33301	chr7:2418324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	NCIH2087_LUNG	1	1	0.0181	TRUE	0	1	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	GEMIN7--CLPTM1	2	0	GEMIN7	1183	chr19:45582635:+	CLPTM1	14097	chr19:45480600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_REARRANGEMENT:+:[85854],GEMIN7->chr19:45582453-45594782:+,gem_nuclear_organelle_associated_protein_7,CLPTM1->chr19:45457842-45496599:+,cleft_lip_and_palate_associated_transmembrane_protein_1	NCIH2087_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	ASAP1--TRPS1	1	1	ASAP1	24018	chr8:131164982:-	TRPS1	54643	chr8:116635985:-	ONLY_REF_SPLICE	YES	29	10	0.06	0.17	0.009	0.009	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1	NCIH2087_LUNG	0.06	0.17	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	ATP11A--CUL4A	1	1	ATP11A	34653	chr13:113530255:+	CUL4A	67191	chr13:113917801:+	ONLY_REF_SPLICE	NO	102	81	0.02	0.02	0.009	0.009	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,CUL4A->chr13:113862552-113919399:+,cullin_4A	NCIH2087_LUNG	0.02	0.02	0.018	TRUE	0	7	0	5	3	TRUE	ACH-000841
NCIH2087_LUNG	CAPN15--NOC4L	1	1	CAPN15	2366	chr16:583998:+	NOC4L	24151	chr12:132635526:+	ONLY_REF_SPLICE	NO	6	70	0.25	0.03	0.009	0.009	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CAPN15->calpain_15,chr16:577717-604636:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	NCIH2087_LUNG	0.03	0.25	0.018	TRUE	0	6	0	4	3	TRUE	ACH-000841
JIMT1_BREAST	FLNB--SLMAP	659	188	FLNB	5340	chr3:58067503:+	SLMAP	80335	chr3:57893611:+	ONLY_REF_SPLICE	YES	843	211	0.5	0.8	9.0624	2.5853	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	JIMT1_BREAST	0.5	0.8	11.6477	TRUE	0	1	0	1	1	TRUE	ACH-000711
JIMT1_BREAST	FLNB--SLMAP	343	411	FLNB	20843	chr3:58107230:+	SLMAP	64698	chr3:57843460:+	ONLY_REF_SPLICE	YES	720	73	0.51	0.91	4.7169	5.652	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	JIMT1_BREAST	0.51	0.91	10.3689	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	PIEZO1--CBFA2T3	271	68	PIEZO1	2407	chr16:88815792:-	CBFA2T3	34265	chr16:88968064:-	ONLY_REF_SPLICE	YES	58	1	0.85	1	3.7267	0.9351	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[89647],PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-	JIMT1_BREAST	0.85	1	4.6618	TRUE	0	1	0	1	1	TRUE	ACH-000711
JIMT1_BREAST	VPS53--GPC5	199	88	VPS53	7511	chr17:600658:-	GPC5	64384	chr13:93518535:+	ONLY_REF_SPLICE	YES	19	0	0.94	1	2.7366	1.2102	VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	JIMT1_BREAST	0.94	1	3.9468	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	GTF2B--MUTYH	116	97	GTF2B	3250	chr1:89352944:-	MUTYH	16587	chr1:45799233:-	ONLY_REF_SPLICE	YES	235	58	0.48	0.79	1.5952	1.3339	{Klijn_CCL:Breast=1},GTF2B->chr1:89318615-89357627:-,general_transcription_factor_IIB,MUTYH->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:45794835-45806142:-,mutY_DNA_glycosylase	JIMT1_BREAST	0.48	0.79	2.9291	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	94	26	ATP13A3	4612	chr3:194206523:-	TMEM44	45833	chr3:194344039:-	ONLY_REF_SPLICE	YES	13	28	0.9	0.81	1.2927	0.3575	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	0.81	0.9	1.6502	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TET3--AOX1	94	13	TET3	1454	chr2:74230293:+	AOX1	40074	chr2:201480694:+	ONLY_REF_SPLICE	YES	0	3	1	0.97	1.2927	0.1788	TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,AOX1->aldehyde_oxidase_1,chr2:201450591-201541787:+	JIMT1_BREAST	0.97	1	1.4715	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	NANS--ANP32B	83	25	NANS	2418	chr9:100823279:+	ANP32B	20683	chr9:100773553:+	ONLY_REF_SPLICE	YES	478	1236	0.18	0.08	1.1414	0.3438	LOCAL_REARRANGEMENT:+:[40796],NANS->N-acetylneuraminate_synthase,chr9:100819021-100845357:+,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	JIMT1_BREAST	0.08	0.18	1.4852	TRUE	0	0	0	2	0	TRUE	ACH-000711
JIMT1_BREAST	ZMYM2--PRIM2	83	19	ZMYM2	8810	chr13:20580726:+	PRIM2	46806	chr6:57244699:+	ONLY_REF_SPLICE	YES	0	53	1	0.66	1.1414	0.2613	ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	JIMT1_BREAST	0.66	1	1.4027	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	IVD--KNSTRN	56	18	IVD	9727	chr15:40708561:+	KNSTRN	24045	chr15:40678563:+	ONLY_REF_SPLICE	YES	53	202	0.58	0.27	0.7701	0.2475	LOCAL_REARRANGEMENT:+:[11239],IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase,KNSTRN->chr15:40674922-40686447:+,kinetochore-localized_astrin/SPAG5_binding_protein	JIMT1_BREAST	0.27	0.58	1.0176	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	USP47--RP11-531H8.2	47	36	USP47	1802	chr11:11863771:+	RP11-531H8.2	39503	chr11:15593946:-	ONLY_REF_SPLICE	YES	16	0	0.84	1	0.6463	0.4951	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,RP11-531H8.2->chr11:15593569-15643937:-	JIMT1_BREAST	0.84	1	1.1414	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	SMIM4--STAB1	43	35	SMIM4	3037	chr3:52570789:+	STAB1	21355	chr3:52545666:+	ONLY_REF_SPLICE	YES	83	0	0.48	1	0.5913	0.4813	LOCAL_REARRANGEMENT:+:[9518],SMIM4->chr3:52568029-52613253:+,small_integral_membrane_protein_4,STAB1->chr3:52529354-52558511:+,stabilin_1	JIMT1_BREAST	0.48	1	1.0726	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FLNB--SLMAP	28	88	FLNB	5340	chr3:58067503:+	SLMAP	81458	chr3:57894803:+	ONLY_REF_SPLICE	YES	843	342	0.12	0.25	0.385	1.2102	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	JIMT1_BREAST	0.12	0.25	1.5952	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	DEDD--RP3-518E13.2	46	11	DEDD	2874	chr1:161100605:-	RP3-518E13.2	11623	chr1:175290118:+	ONLY_REF_SPLICE	YES	64	0	0.47	1	0.6326	0.1513	DEDD->chr1:161090764-161102478:-,death_effector_domain_containing,RP3-518E13.2->chr1:175276354-175304595:+	JIMT1_BREAST	0.47	1	0.7839	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	SRC--RPN2	46	10	SRC	9178	chr20:36022680:+	RPN2	38639	chr20:35862423:+	ONLY_REF_SPLICE	YES	138	969	0.29	0.05	0.6326	0.1375	SRC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,SRC_proto-oncogene,_non-receptor_tyrosine_kinase,chr20:35973088-36034453:+,RPN2->chr20:35806813-35870022:+,ribophorin_II	JIMT1_BREAST	0.05	0.29	0.7701	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FLNB--SLMAP	1	188	FLNB	5340	chr3:58067503:+	SLMAP	71262	chr3:57875768:+	ONLY_REF_SPLICE	NO	843	261	0.18	0.42	0.0138	2.5853	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	JIMT1_BREAST	0.18	0.42	2.5991	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	GTF2B--MUTYH	16	105	GTF2B	3250	chr1:89352944:-	MUTYH	16554	chr1:45799266:-	ONLY_REF_SPLICE	YES	235	59	0.34	0.67	0.22	1.4439	{Klijn_CCL:Breast=1},GTF2B->chr1:89318615-89357627:-,general_transcription_factor_IIB,MUTYH->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:45794835-45806142:-,mutY_DNA_glycosylase	JIMT1_BREAST	0.34	0.67	1.6639	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	GTF2B--MUTYH	17	100	GTF2B	3250	chr1:89352944:-	MUTYH	16584	chr1:45799236:-	ONLY_REF_SPLICE	YES	235	62	0.33	0.65	0.2338	1.3752	{Klijn_CCL:Breast=1},GTF2B->chr1:89318615-89357627:-,general_transcription_factor_IIB,MUTYH->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:45794835-45806142:-,mutY_DNA_glycosylase	JIMT1_BREAST	0.33	0.65	1.609	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	34	21	ATP13A3	4612	chr3:194206523:-	TMEM44	48103	chr3:194337998:-	ONLY_REF_SPLICE	YES	13	52	0.81	0.51	0.4676	0.2888	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	0.51	0.81	0.7564	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	BTBD10--TERT	31	5	BTBD10	1206	chr11:13484639:-	TERT	20933	chr5:1282739:-	ONLY_REF_SPLICE	YES	110	1	0.25	0.97	0.4263	0.0688	BTBD10->BTB_domain_containing_10,chr11:13409548-13484844:-,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	JIMT1_BREAST	0.25	0.97	0.4951	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	28	13	ATP13A3	4612	chr3:194206523:-	TMEM44	48481	chr3:194337620:-	ONLY_REF_SPLICE	YES	13	180	0.76	0.19	0.385	0.1788	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	0.19	0.76	0.5638	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	GTF2B--MUTYH	17	52	GTF2B	3250	chr1:89352944:-	MUTYH	16651	chr1:45799169:-	ONLY_REF_SPLICE	YES	235	38	0.23	0.64	0.2338	0.7151	{Klijn_CCL:Breast=1},GTF2B->chr1:89318615-89357627:-,general_transcription_factor_IIB,MUTYH->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:45794835-45806142:-,mutY_DNA_glycosylase	JIMT1_BREAST	0.23	0.64	0.9489	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	KIAA2018--DDHD2	24	10	KIAA2018	1277	chr3:113415217:-	DDHD2	26474	chr8:38090505:+	ONLY_REF_SPLICE	YES	7	209	0.83	0.14	0.33	0.1375	KIAA2018->chr3:113367232-113415493:-,DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	JIMT1_BREAST	0.14	0.83	0.4675	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FLVCR2--BATF	24	9	FLVCR2	2025	chr14:76045984:+	BATF	22657	chr14:76012805:+	ONLY_REF_SPLICE	YES	5	35	0.87	0.49	0.33	0.1238	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[31602],FLVCR2->chr14:76044960-76129557:+,feline_leukemia_virus_subgroup_C_cellular_receptor_family_member_2,BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+	JIMT1_BREAST	0.49	0.87	0.4538	TRUE	0	1	0	1	1	TRUE	ACH-000711
JIMT1_BREAST	CAMSAP2--RP11-16L9.3	22	9	CAMSAP2	9868	chr1:200813997:+	RP11-16L9.3	26657	chr1:198977697:-	ONLY_REF_SPLICE	YES	41	0	0.43	1	0.3025	0.1238	CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,RP11-16L9.3->chr1:198975169-198990166:-	JIMT1_BREAST	0.43	1	0.4263	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TBC1D8--MIR4435-1HG	21	10	TBC1D8	17689	chr2:101650006:-	MIR4435-1HG	39279	chr2:112187197:-	ONLY_REF_SPLICE	YES	38	624	0.45	0.05	0.2888	0.1375	TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,MIR4435-1HG->chr2:111953927-112252677:-	JIMT1_BREAST	0.05	0.45	0.4263	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	NEURL--PDCD11	22	1	NEURL	2676	chr10:105315170:+	PDCD11	37646	chr10:105191886:+	ONLY_REF_SPLICE	YES	61	38	0.27	0.38	0.3025	0.0138	LOCAL_REARRANGEMENT:+:[47687],NEURL->chr10:105253736-105352309:+,PDCD11->chr10:105156405-105206049:+,programmed_cell_death_11	JIMT1_BREAST	0.27	0.38	0.3163	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	NETO2--ITFG1	17	19	NETO2	8115	chr16:47120137:-	ITFG1	45598	chr16:47192901:-	ONLY_REF_SPLICE	YES	151	66	0.19	0.35	0.2338	0.2613	GTEx_FI:{Brain=[count:3=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Amygdala=1},LOCAL_REARRANGEMENT:-:[10390],NETO2->chr16:47111614-47177908:-,neuropilin_and_tolloid_like_2,ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1	JIMT1_BREAST	0.19	0.35	0.4951	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	PIEZO1--CBFA2T3	18	14	PIEZO1	1311	chr16:88851309:-	CBFA2T3	34265	chr16:88968064:-	ONLY_REF_SPLICE	YES	24	1	0.57	0.97	0.2475	0.1925	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[89647],PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-	JIMT1_BREAST	0.57	0.97	0.44	TRUE	0	1	0	1	1	TRUE	ACH-000711
JIMT1_BREAST	TRIM5--RP11-222N13.1	17	15	TRIM5	2219	chr11:5958631:-	RP11-222N13.1	22310	chr11:15944830:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2338	0.2063	TRIM5->chr11:5684425-5959849:-,tripartite_motif_containing_5,RP11-222N13.1->chr11:15932503-15948989:+	JIMT1_BREAST	1	1	0.4401	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TRIM5--RP11-222N13.1	18	10	TRIM5	2219	chr11:5958631:-	RP11-222N13.1	23409	chr11:15948778:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.2475	0.1375	TRIM5->chr11:5684425-5959849:-,tripartite_motif_containing_5,RP11-222N13.1->chr11:15932503-15948989:+	JIMT1_BREAST	0.97	1	0.385	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	17	5	ATP13A3	4612	chr3:194206523:-	TMEM44	50804	chr3:194331749:-	ONLY_REF_SPLICE	YES	13	178	0.63	0.11	0.2338	0.0688	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	0.11	0.63	0.3026	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	SMIM4--STAB1	5	46	SMIM4	3170	chr3:52570922:+	STAB1	21355	chr3:52545666:+	ONLY_REF_SPLICE	YES	22	0	0.7	1	0.0688	0.6326	LOCAL_REARRANGEMENT:+:[9518],SMIM4->chr3:52568029-52613253:+,small_integral_membrane_protein_4,STAB1->chr3:52529354-52558511:+,stabilin_1	JIMT1_BREAST	0.7	1	0.7014	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	GBP2--FGGY	14	5	GBP2	7520	chr1:89585777:-	FGGY	33477	chr1:59922633:+	INCL_NON_REF_SPLICE	YES	39	36	0.33	0.35	0.1925	0.0688	GBP2->chr1:89571815-89616139:-,guanylate_binding_protein_2,FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+	JIMT1_BREAST	0.33	0.35	0.2613	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	C9--LINC00604	13	6	C9	1065	chr5:39424906:-	LINC00604	19801	chr5:40267458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1788	0.0825	C9->chr5:39284364-39424970:-,complement_component_9,LINC00604->chr5:40260759-40267759:+,long_intergenic_non-protein_coding_RNA_604	JIMT1_BREAST	1	1	0.2613	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	NETO2--ITFG1	11	11	NETO2	7001	chr16:47143394:-	ITFG1	45598	chr16:47192901:-	ONLY_REF_SPLICE	YES	139	66	0.14	0.25	0.1513	0.1513	GTEx_FI:{Brain=[count:3=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Amygdala=1},LOCAL_REARRANGEMENT:-:[10390],NETO2->chr16:47111614-47177908:-,neuropilin_and_tolloid_like_2,ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1	JIMT1_BREAST	0.14	0.25	0.3026	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TRIM5--RP11-222N13.1	7	21	TRIM5	2219	chr11:5958631:-	RP11-222N13.1	21207	chr11:15933328:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0963	0.2888	TRIM5->chr11:5684425-5959849:-,tripartite_motif_containing_5,RP11-222N13.1->chr11:15932503-15948989:+	JIMT1_BREAST	1	1	0.3851	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	USP47--RP11-531H8.2	3	35	USP47	1802	chr11:11863771:+	RP11-531H8.2	39507	chr11:15593942:-	INCL_NON_REF_SPLICE	YES	16	0	0.7	1	0.0413	0.4813	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,RP11-531H8.2->chr11:15593569-15643937:-	JIMT1_BREAST	0.7	1	0.5226	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TRIM5--RP11-222N13.1	6	20	TRIM5	2219	chr11:5958631:-	RP11-222N13.1	21211	chr11:15933332:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0825	0.275	TRIM5->chr11:5684425-5959849:-,tripartite_motif_containing_5,RP11-222N13.1->chr11:15932503-15948989:+	JIMT1_BREAST	1	1	0.3575	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	5	21	ATP13A3	4612	chr3:194206523:-	TMEM44	48082	chr3:194338019:-	INCL_NON_REF_SPLICE	YES	13	54	0.67	0.33	0.0688	0.2888	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	0.33	0.67	0.3576	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TESK2--GTF2B	10	0	TESK2	3779	chr1:45887397:-	GTF2B	18589	chr1:89353050:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1375	0	TESK2->chr1:45809555-45956872:-,testis-specific_kinase_2,GTF2B->chr1:89318615-89357627:-,general_transcription_factor_IIB	JIMT1_BREAST	1	1	0.1375	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	VPS53--GPC5	1	34	VPS53	3923	chr17:613773:-	GPC5	64384	chr13:93518535:+	ONLY_REF_SPLICE	YES	105	0	0.25	1	0.0138	0.4676	VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	JIMT1_BREAST	0.25	1	0.4814	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	SMIM4--STAB1	1	31	SMIM4	3170	chr3:52570922:+	STAB1	22046	chr3:52546357:+	ONLY_REF_SPLICE	NO	22	9	0.59	0.78	0.0138	0.4263	LOCAL_REARRANGEMENT:+:[9518],SMIM4->chr3:52568029-52613253:+,small_integral_membrane_protein_4,STAB1->chr3:52529354-52558511:+,stabilin_1	JIMT1_BREAST	0.59	0.78	0.4401	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ZNF510--HIATL2	7	7	ZNF510	3853	chr9:99537070:-	HIATL2	21794	chr9:99696197:-	ONLY_REF_SPLICE	YES	27	27	0.34	0.34	0.0963	0.0963	ZNF510->chr9:99518147-99540411:-,zinc_finger_protein_510,HIATL2->chr9:99660348-99775862:-	JIMT1_BREAST	0.34	0.34	0.1926	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	SMIM4--STAB1	3	19	SMIM4	3170	chr3:52570922:+	STAB1	22301	chr3:52546612:+	ONLY_REF_SPLICE	YES	22	14	0.5	0.61	0.0413	0.2613	LOCAL_REARRANGEMENT:+:[9518],SMIM4->chr3:52568029-52613253:+,small_integral_membrane_protein_4,STAB1->chr3:52529354-52558511:+,stabilin_1	JIMT1_BREAST	0.5	0.61	0.3026	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	PIEZO1--CBFA2T3	2	19	PIEZO1	2407	chr16:88815792:-	CBFA2T3	36493	chr16:88958893:-	ONLY_REF_SPLICE	YES	58	157	0.27	0.12	0.0275	0.2613	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[89647],PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-	JIMT1_BREAST	0.12	0.27	0.2888	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	PITPNC1--NCK2	6	2	PITPNC1	1744	chr17:65374318:+	NCK2	25285	chr2:106432887:+	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.0825	0.0275	PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1,NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+	JIMT1_BREAST	0.73	1	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	IVD--KNSTRN	1	21	IVD	9727	chr15:40708561:+	KNSTRN	22579	chr15:40676658:+	ONLY_REF_SPLICE	YES	53	204	0.29	0.1	0.0138	0.2888	LOCAL_REARRANGEMENT:+:[11239],IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase,KNSTRN->chr15:40674922-40686447:+,kinetochore-localized_astrin/SPAG5_binding_protein	JIMT1_BREAST	0.1	0.29	0.3026	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ANP32B--SEPT7	5	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	JIMT1_BREAST	1	1	0.0688	TRUE	1	1	0	18	1	TRUE	ACH-000711
JIMT1_BREAST	DLGAP4--AAR2	5	0	DLGAP4	2412	chr20:34995678:+	AAR2	32500	chr20:34843500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0688	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Brain_-_Frontal_Cortex_(BA9)=1},LOCAL_REARRANGEMENT:+:[35418],DLGAP4->chr20:34894258-35157040:+,discs_large_homolog_associated_protein_4,AAR2->AAR2_splicing_factor_homolog,chr20:34824381-34858840:+	JIMT1_BREAST	1	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	BTBD10--TERT	3	7	BTBD10	1206	chr11:13484639:-	TERT	18193	chr5:1294781:-	ONLY_REF_SPLICE	YES	110	0	0.08	1	0.0413	0.0963	BTBD10->BTB_domain_containing_10,chr11:13409548-13484844:-,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	JIMT1_BREAST	0.08	1	0.1376	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	IVD--KNSTRN	1	14	IVD	9727	chr15:40708561:+	KNSTRN	24088	chr15:40678606:+	ONLY_REF_SPLICE	YES	53	183	0.22	0.08	0.0138	0.1925	LOCAL_REARRANGEMENT:+:[11239],IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase,KNSTRN->chr15:40674922-40686447:+,kinetochore-localized_astrin/SPAG5_binding_protein	JIMT1_BREAST	0.08	0.22	0.2063	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	1	12	ATP13A3	4612	chr3:194206523:-	TMEM44	48785	chr3:194337316:-	ONLY_REF_SPLICE	NO	13	203	0.5	0.06	0.0138	0.165	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	0.06	0.5	0.1788	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	MTFR1--PTDSS1	4	0	MTFR1	1051	chr8:66557019:+	PTDSS1	23260	chr8:97285527:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.055	0	MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,PTDSS1->chr8:97273943-97349223:+,phosphatidylserine_synthase_1	JIMT1_BREAST	1	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	SMARCA4--C19orf38	3	4	SMARCA4	1253	chr19:11071850:+	C19orf38	53655	chr19:10973846:+	ONLY_REF_SPLICE	YES	50	2	0.12	0.78	0.0413	0.055	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	JIMT1_BREAST	0.12	0.78	0.0963	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	NR2F1-AS1--CTD-2275D24.3	3	3	NR2F1-AS1	8930	chr5:92889467:-	CTD-2275D24.3	25519	chr5:73624110:-	ONLY_REF_SPLICE	YES	25	0	0.19	1	0.0413	0.0413	NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-,CTD-2275D24.3->chr5:73623820-73630591:-	JIMT1_BREAST	0.19	1	0.0826	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	SMARCA4--C19orf38	3	2	SMARCA4	1253	chr19:11071850:+	C19orf38	54693	chr19:10979894:+	ONLY_REF_SPLICE	YES	50	1	0.09	0.83	0.0413	0.0275	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	JIMT1_BREAST	0.09	0.83	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FLVCR2--BATF	3	1	FLVCR2	1593	chr14:76045552:+	BATF	22657	chr14:76012805:+	INCL_NON_REF_SPLICE	YES	16	35	0.2	0.1	0.0413	0.0138	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[31602],FLVCR2->chr14:76044960-76129557:+,feline_leukemia_virus_subgroup_C_cellular_receptor_family_member_2,BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+	JIMT1_BREAST	0.1	0.2	0.0551	TRUE	0	1	0	1	1	TRUE	ACH-000711
JIMT1_BREAST	ANKRD36--FAM178B	3	0	ANKRD36	2895	chr2:97784254:+	FAM178B	75918	chr2:97613639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	{Klijn_CCL:Breast=1},LOCAL_INVERSION:+:-:[95058],ANKRD36->ankyrin_repeat_domain_36,chr2:97779233-97930258:+,FAM178B->chr2:97541620-97684175:-,family_with_sequence_similarity_178_member_B	JIMT1_BREAST	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	3	0	ATP13A3	4612	chr3:194206523:-	TMEM44	56741	chr3:194309368:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FAM222B--CRTC1	3	0	FAM222B	2441	chr17:27169700:-	CRTC1	24069	chr19:18860591:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+	JIMT1_BREAST	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FLNB--RP11-755B10.2	3	0	FLNB	1457	chr3:57994583:+	RP11-755B10.2	58046	chr3:57640351:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,RP11-755B10.2->chr3:57614537-57640645:+	JIMT1_BREAST	1	1	0.0413	TRUE	0	1	0	1	1	TRUE	ACH-000711
JIMT1_BREAST	GTF2B--MUTYH	3	0	GTF2B	3250	chr1:89352944:-	MUTYH	20711	chr1:45795109:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	{Klijn_CCL:Breast=1},GTF2B->chr1:89318615-89357627:-,general_transcription_factor_IIB,MUTYH->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:45794835-45806142:-,mutY_DNA_glycosylase	JIMT1_BREAST	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ITCH--ASIP	3	0	ITCH	3377	chr20:32981687:+	ASIP	35434	chr20:32848171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUAD:1|LUSC:1|OV:1],LOCAL_REARRANGEMENT:+:[93891],ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	JIMT1_BREAST	1	1	0.0413	TRUE	0	3	0	2	3	TRUE	ACH-000711
JIMT1_BREAST	SBF2--RNF141	3	0	SBF2	1193	chr11:10315562:-	RNF141	72891	chr11:10536613:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,RNF141->chr11:10533225-10562777:-,ring_finger_protein_141	JIMT1_BREAST	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	BTBD10--TERT	1	6	BTBD10	1198	chr11:13484647:-	TERT	18193	chr5:1294781:-	ONLY_REF_SPLICE	YES	80	0	0.08	1	0.0138	0.0825	BTBD10->BTB_domain_containing_10,chr11:13409548-13484844:-,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	JIMT1_BREAST	0.08	1	0.0963	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	BTBD10--TERT	1	5	BTBD10	1198	chr11:13484647:-	TERT	20933	chr5:1282739:-	ONLY_REF_SPLICE	YES	80	1	0.07	0.86	0.0138	0.0688	BTBD10->BTB_domain_containing_10,chr11:13409548-13484844:-,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	JIMT1_BREAST	0.07	0.86	0.0826	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FAM222B--CRTC1	2	1	FAM222B	4726	chr17:27139227:-	CRTC1	24069	chr19:18860591:+	ONLY_REF_SPLICE	YES	18	13	0.14	0.19	0.0275	0.0138	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+	JIMT1_BREAST	0.14	0.19	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	CFL1--VARS2	2	0	CFL1	4089	chr11:65625568:-	VARS2	22514	chr6:30882587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	CFL1->chr11:65590493-65629497:-,cofilin_1,VARS2->chr6:30876019-30894236:+,valyl-tRNA_synthetase_2,_mitochondrial	JIMT1_BREAST	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	DLGAP4--AAR2	2	0	DLGAP4	1177	chr20:34894434:+	AAR2	29465	chr20:34827743:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Brain_-_Frontal_Cortex_(BA9)=1},LOCAL_REARRANGEMENT:+:[35418],DLGAP4->chr20:34894258-35157040:+,discs_large_homolog_associated_protein_4,AAR2->AAR2_splicing_factor_homolog,chr20:34824381-34858840:+	JIMT1_BREAST	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	KIAA1671--SGSM1	2	0	KIAA1671	1043	chr22:25348739:+	SGSM1	49106	chr22:25280020:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[25152],KIAA1671->KIAA1671,chr22:25348697-25593415:+,SGSM1->chr22:25202236-25323545:+,small_G_protein_signaling_modulator_1	JIMT1_BREAST	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	RP11-3B12.1--TNPO2	2	0	RP11-3B12.1	5854	chr7:124660467:+	TNPO2	32947	chr19:12826352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	RP11-3B12.1->chr7:124569927-124819369:+,TNPO2->chr19:12810008-12834825:-,transportin_2	JIMT1_BREAST	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FAM222B--CRTC1	1	2	FAM222B	4726	chr17:27139227:-	CRTC1	21869	chr19:18856633:+	ONLY_REF_SPLICE	NO	18	16	0.14	0.16	0.0138	0.0275	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+	JIMT1_BREAST	0.14	0.16	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ABCC8--MICALCL	1	1	ABCC8	3538	chr11:17491648:-	MICALCL	39014	chr11:12302480:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0138	0.0138	ABCC8->ATP_binding_cassette_subfamily_C_member_8,chr11:17414432-17498449:-,MICALCL->MICAL_C-terminal_like,chr11:12297627-12380691:+	JIMT1_BREAST	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	DROSHA--RP11-100M12.3	1	1	DROSHA	13103	chr5:31495393:-	RP11-100M12.3	47586	chr15:27782266:-	ONLY_REF_SPLICE	YES	55	0	0.04	1	0.0138	0.0138	DROSHA->chr5:31400604-31532303:-,drosha_ribonuclease_III,RP11-100M12.3->chr15:27728181-27787137:-	JIMT1_BREAST	0.04	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	SFMBT1--CACNA1D	1	1	SFMBT1	1935	chr3:53079832:-	CACNA1D	57846	chr3:53777038:+	ONLY_REF_SPLICE	NO	18	13	0.1	0.13	0.0138	0.0138	SFMBT1->Scm-like_with_four_mbt_domains_1,chr3:52937588-53080766:-,CACNA1D->calcium_voltage-gated_channel_subunit_alpha1_D,chr3:53528683-53847760:+	JIMT1_BREAST	0.1	0.13	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TGFB1--P2RY11	1	1	TGFB1	7020	chr19:41838033:-	P2RY11	15878	chr19:10224309:+	ONLY_REF_SPLICE	YES	7	0	0.22	1	0.0138	0.0138	TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1,P2RY11->chr19:10222214-10226048:+,purinergic_receptor_P2Y11	JIMT1_BREAST	0.22	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000711
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	467	0	RPL14	4483	chr3:40503515:+	AC005540.3	8966	chr2:191745649:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.0088	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	2.0088	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	121	0	RPL14	4486	chr3:40503518:+	AC005540.3	8972	chr2:191745643:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5205	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.5205	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	83	0	RPL14	4492	chr3:40503524:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.357	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.357	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	73	0	RPL14	4486	chr3:40503518:+	AC005540.3	8975	chr2:191745640:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.314	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.314	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	70	0	RPL14	4489	chr3:40503521:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3011	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.3011	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	69	0	RPL14	4488	chr3:40503520:+	AC005540.3	8971	chr2:191745644:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2968	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.2968	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	54	0	RPL14	4488	chr3:40503520:+	AC005540.3	8974	chr2:191745641:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2323	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.2323	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	37	0	RPL14	4495	chr3:40503527:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1592	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.1592	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	DHX34--SAE1	33	0	DHX34	1072	chr19:47852609:+	SAE1	35712	chr19:47712416:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1419	0	DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	JHUEM1_ENDOMETRIUM	1	1	0.1419	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	32	0	A1CF	22715	chr10:52561146:-	CASC3	27763	chr17:38296641:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1376	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.1376	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	31	0	RPL14	4498	chr3:40503530:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1333	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.1333	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	29	0	RPL14	4488	chr3:40503520:+	AC005540.3	8977	chr2:191745638:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1247	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.1247	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	FAM65B--CMAHP	24	18	FAM65B	5965	chr6:24875919:-	CMAHP	48079	chr6:25097429:-	ONLY_REF_SPLICE	YES	19	12	0.69	0.78	0.1032	0.0774	LOCAL_REARRANGEMENT:-:[39310],FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	JHUEM1_ENDOMETRIUM	0.69	0.78	0.1806	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	28	0	A1CF	22715	chr10:52561146:-	CASC3	27761	chr17:38296639:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1204	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.1204	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	FAM65B--CMAHP	16	43	FAM65B	5965	chr6:24875919:-	CMAHP	46361	chr6:25106757:-	ONLY_REF_SPLICE	YES	19	5	0.76	0.92	0.0688	0.185	LOCAL_REARRANGEMENT:-:[39310],FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	JHUEM1_ENDOMETRIUM	0.76	0.92	0.2538	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	22	0	RPL14	4501	chr3:40503533:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0946	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.0946	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	FAM65B--CMAHP	11	42	FAM65B	5965	chr6:24875919:-	CMAHP	46364	chr6:25106754:-	INCL_NON_REF_SPLICE	YES	19	5	0.74	0.91	0.0473	0.1807	LOCAL_REARRANGEMENT:-:[39310],FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	JHUEM1_ENDOMETRIUM	0.74	0.91	0.228	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	20	0	RPL14	4485	chr3:40503517:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.086	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.086	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	17	0	RPL14	4504	chr3:40503536:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0731	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.0731	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	16	0	RPL14	4487	chr3:40503519:+	AC005540.3	8967	chr2:191745648:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.0688	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	15	0	A1CF	22715	chr10:52561146:-	CASC3	27765	chr17:38296643:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0645	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.0645	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	15	0	RPL14	4507	chr3:40503539:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0645	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.0645	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	FAM65B--CMAHP	4	36	FAM65B	5965	chr6:24875919:-	CMAHP	46396	chr6:25106722:-	ONLY_REF_SPLICE	YES	19	5	0.68	0.89	0.0172	0.1549	LOCAL_REARRANGEMENT:-:[39310],FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	JHUEM1_ENDOMETRIUM	0.68	0.89	0.1721	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	12	0	RPL14	4486	chr3:40503518:+	AC005540.3	8978	chr2:191745637:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.0516	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	9	0	A1CF	22715	chr10:52561146:-	CASC3	27701	chr17:38296579:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RP11-973F15.1--RP11-96B2.1	6	5	RP11-973F15.1	3763	chr8:123682599:-	RP11-96B2.1	7930	chr8:123499705:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0.0215	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	JHUEM1_ENDOMETRIUM	1	1	0.0473	TRUE	0	2	0	4	2	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	7	0	A1CF	22715	chr10:52561146:-	CASC3	27759	chr17:38296637:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	CLIP1--RSRC2	6	2	CLIP1	1112	chr12:122907068:-	RSRC2	42884	chr12:123011548:-	INCL_NON_REF_SPLICE	YES	50	0	0.14	1	0.0258	0.0086	LOCAL_REARRANGEMENT:-:[82011],CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,RSRC2->arginine/serine-rich_coiled-coil_2,chr12:122989190-123011547:-	JHUEM1_ENDOMETRIUM	0.14	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	6	0	A1CF	22715	chr10:52561146:-	CASC3	27767	chr17:38296645:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	ANO7--FARP2	4	1	ANO7	20467	chr2:242157796:+	FARP2	51409	chr2:242396162:+	ONLY_REF_SPLICE	YES	24	44	0.17	0.1	0.0172	0.0043	ANO7->anoctamin_7,chr2:242127924-242164792:+,FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+	JHUEM1_ENDOMETRIUM	0.1	0.17	0.0215	TRUE	0	0	0	2	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	FAM65B--CMAHP	1	13	FAM65B	3433	chr6:24911046:-	CMAHP	43833	chr6:25110331:-	ONLY_REF_SPLICE	YES	20	4	0.41	0.78	0.0043	0.0559	LOCAL_REARRANGEMENT:-:[39310],FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	JHUEM1_ENDOMETRIUM	0.41	0.78	0.0602	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	ANXA2--NARG2	4	0	ANXA2	11842	chr15:60678227:-	NARG2	54294	chr15:60728426:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	JHUEM1_ENDOMETRIUM	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PRDX5--CALR	4	0	PRDX5	1254	chr11:64085813:+	CALR	7409	chr19:13049423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	PRDX5->chr11:64085560-64089283:+,peroxiredoxin_5,CALR->calreticulin,chr19:13049392-13055303:+	JHUEM1_ENDOMETRIUM	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	C6orf99--EZR-AS1	3	2	C6orf99	3588	chr6:159316372:+	EZR-AS1	9132	chr6:159239114:+	INCL_NON_REF_SPLICE	YES	48	0	0.09	1	0.0129	0.0086	LOCAL_REARRANGEMENT:+:[49346],C6orf99->chr6:159290971-159331385:+,chromosome_6_open_reading_frame_99,EZR-AS1->EZR_antisense_RNA_1,chr6:159239043-159241625:+	JHUEM1_ENDOMETRIUM	0.09	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	3	0	A1CF	22715	chr10:52561146:-	CASC3	27711	chr17:38296589:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0129	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	3	0	A1CF	22715	chr10:52561146:-	CASC3	27717	chr17:38296595:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0129	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	C17orf76-AS1--HMGB1	3	0	C17orf76-AS1	1593	chr17:16342728:+	HMGB1	17950	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0	C17orf76-AS1->chr17:16342136-16381992:+,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	OTUB1--COX8A	3	0	OTUB1	3602	chr11:63756224:+	COX8A	14254	chr11:63743697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[9310],OTUB1->OTU_deubiquitinase,_ubiquitin_aldehyde_binding_1,chr11:63753325-63769283:+,COX8A->chr11:63742079-63744015:+,cytochrome_c_oxidase_subunit_8A	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	0	1	0	4	1	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PAX8--ACTB	3	0	PAX8	13682	chr2:113977825:-	ACTB	25763	chr7:5568336:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0129	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,PAX8->Oncogene{Bushman},chr2:113973574-114036527:-,paired_box_8,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	3	0	RPL14	4482	chr3:40503514:+	AC005540.3	8965	chr2:191745650:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0129	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	ZNF331--ATG4D	3	0	ZNF331	6509	chr19:54041550:+	ATG4D	25859	chr19:10662721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0	ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,ATG4D->autophagy_related_4D_cysteine_peptidase,chr19:10654571-10664094:+	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	FAM65B--CMAHP	1	7	FAM65B	2283	chr6:24936066:-	CMAHP	44355	chr6:25109809:-	ONLY_REF_SPLICE	YES	7	7	0.53	0.53	0.0043	0.0301	LOCAL_REARRANGEMENT:-:[39310],FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	JHUEM1_ENDOMETRIUM	0.53	0.53	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RP11-384J4.2--NOVA1-AS1	2	1	RP11-384J4.2	2280	chr14:27312862:+	NOVA1-AS1	20652	chr14:27267120:+	ONLY_REF_SPLICE	YES	4	3	0.43	0.5	0.0086	0.0043	LOCAL_REARRANGEMENT:+:[30261],RP11-384J4.2->chr14:27305934-27629626:+,NOVA1-AS1->NOVA1_antisense_RNA_1_(head_to_head),chr14:27067618-27275673:+	JHUEM1_ENDOMETRIUM	0.43	0.5	0.0129	TRUE	0	0	0	2	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	ACACA--HNRNPH1	2	0	ACACA	10478	chr17:35715942:-	HNRNPH1	89153	chr5:179044111:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	BSG--GZMM	2	0	BSG	2405	chr19:572701:+	GZMM	14559	chr19:547280:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[21378],BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GZMM->chr19:544034-549919:+,granzyme_M	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	5	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	CXXC1--SP1	2	0	CXXC1	1718	chr18:47813957:-	SP1	11446	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	CXXC1->CXXC_finger_protein_1,chr18:47808713-47814674:-,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	ERBB4--SP1	2	0	ERBB4	1393	chr2:213403173:-	SP1	47560	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	EXPH5--KANSL1L	2	0	EXPH5	1321	chr11:108464145:-	KANSL1L	25588	chr2:211019335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	EXPH5->chr11:108376158-108464465:-,exophilin_5,KANSL1L->KAT8_regulatory_NSL_complex_subunit_1_like,chr2:210886147-211036107:-	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	EZR--RSPH3	2	0	EZR	2248	chr6:159239114:-	RSPH3	25887	chr6:159399378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	EZR->chr6:159186773-159240444:-,ezrin,RSPH3->chr6:159393903-159421219:-,radial_spoke_3_homolog	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	3	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	HEATR5B--GSK3B	2	0	HEATR5B	2054	chr2:37310432:-	GSK3B	50627	chr3:119635021:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	HEATR5B->HEAT_repeat_containing_5B,chr2:37195526-37311485:-,GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	KPNA1--GSK3B	2	0	KPNA1	2682	chr3:122215284:-	GSK3B	29305	chr3:119666198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1,GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MFGE8--ACOX3	2	0	MFGE8	1165	chr15:89456478:-	ACOX3	23339	chr4:8401379:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	MFGE8->chr15:89441916-89456642:-,milk_fat_globule-EGF_factor_8_protein,ACOX3->acyl-CoA_oxidase_3,_pristanoyl,chr4:8368009-8442450:-	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MSMO1--LTV1	2	0	MSMO1	1142	chr4:166248916:+	LTV1	19953	chr6:144184223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	MSMO1->chr4:166248775-166264312:+,methylsterol_monooxygenase_1,LTV1->LTV1_ribosome_biogenesis_factor,chr6:144164481-144184949:+	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PCBD2--AACS	2	0	PCBD2	1318	chr5:134240913:+	AACS	45718	chr12:125612707:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	PCBD2->chr5:134240596-134343649:+,pterin-4_alpha-carbinolamine_dehydratase_2,AACS->acetoacetyl-CoA_synthetase,chr12:125549925-125627873:+	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PDIA5--CCDC14	2	0	PDIA5	18758	chr3:122928246:+	CCDC14	33371	chr3:123667979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	PDIA5->chr3:122785909-122944074:+,protein_disulfide_isomerase_family_A_member_5,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PHACTR4--SESN2	2	0	PHACTR4	2277	chr1:28733974:+	SESN2	28247	chr1:28595694:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	LOCAL_REARRANGEMENT:+:[87112],PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,SESN2->chr1:28586038-28609002:+,sestrin_2	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PIGF--MYO10	2	0	PIGF	6652	chr2:46819614:-	MYO10	33581	chr5:16755017:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	PIGF->chr2:46808076-46844258:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_F,MYO10->chr5:16665395-16936372:-,myosin_X	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PLGRKT--FAM204A	2	0	PLGRKT	2310	chr9:5436569:-	FAM204A	16101	chr10:120085755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	PLGRKT->chr9:5357973-5437878:-,plasminogen_receptor_with_a_C-terminal_lysine,FAM204A->chr10:120065401-120101840:-,family_with_sequence_similarity_204_member_A	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	1	0	17	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	SLC39A9--TBC1D5	2	0	SLC39A9	3560	chr14:69890919:+	TBC1D5	59241	chr3:17255862:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	SLC39A9->chr14:69864732-69929105:+,solute_carrier_family_39_member_9,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	SPATC1L--FAM207A	2	0	SPATC1L	1121	chr21:47604270:-	FAM207A	12635	chr21:46380015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	SPATC1L->chr21:47581062-47604390:-,spermatogenesis_and_centriole_associated_1-like,FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	TPCN2--TOLLIP	2	0	TPCN2	1210	chr11:68816574:+	TOLLIP	38613	chr11:1298483:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,TOLLIP->chr11:1295601-1330884:-,toll_interacting_protein	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RP11-384J4.2--NOVA1-AS1	1	3	RP11-384J4.2	2280	chr14:27312862:+	NOVA1-AS1	13057	chr14:27106401:+	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0043	0.0129	LOCAL_REARRANGEMENT:+:[30261],RP11-384J4.2->chr14:27305934-27629626:+,NOVA1-AS1->NOVA1_antisense_RNA_1_(head_to_head),chr14:27067618-27275673:+	JHUEM1_ENDOMETRIUM	0.5	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000928
MG63_BONE	DNER--ELL2	298	172	DNER	6135	chr2:230450574:-	ELL2	26965	chr5:95242486:-	ONLY_REF_SPLICE	YES	307	255	0.6	0.65	4.2651	2.4617	{Klijn_CCL:Sarcomatoid=1},DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing,ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2	MG63_BONE	0.6	0.65	6.7268	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	TP53--VAV1	244	33	TP53	1162	chr17:7590695:-	VAV1	36472	chr19:6857065:+	ONLY_REF_SPLICE	YES	0	0	1	1	3.4922	0.4723	TP53->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr17:7565097-7590856:-,tumor_protein_p53,VAV1->Oncogene{Bushman},chr19:6772725-6857377:+,vav_guanine_nucleotide_exchange_factor_1	MG63_BONE	1	1	3.9645	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MTAP--BNC2	116	72	MTAP	9899	chr9:21854869:+	BNC2	32978	chr9:16437522:-	ONLY_REF_SPLICE	YES	0	10	1	0.95	1.6602	1.0305	{Klijn_CCL:Sarcomatoid=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,BNC2->basonuclin_2,chr9:16409501-16870841:-	MG63_BONE	0.95	1	2.6907	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ELL2--TRIP12	109	51	ELL2	2545	chr5:95278706:-	TRIP12	62537	chr2:230634041:-	ONLY_REF_SPLICE	YES	320	168	0.33	0.49	1.5601	0.7299	{Klijn_CCL:Sarcomatoid=1},ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	MG63_BONE	0.33	0.49	2.29	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	TP53--EMR1	72	19	TP53	1162	chr17:7590695:-	EMR1	16174	chr19:6890492:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.0305	0.2719	TP53->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr17:7565097-7590856:-,tumor_protein_p53,EMR1->chr19:6887577-6940470:+	MG63_BONE	1	1	1.3024	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	EXT1--RP11-94A24.1	70	23	EXT1	2769	chr8:119122324:-	RP11-94A24.1	24457	chr8:123429261:-	ONLY_REF_SPLICE	YES	753	1	0.11	0.99	1.0019	0.3292	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,RP11-94A24.1->chr8:123426571-123440790:-	MG63_BONE	0.11	0.99	1.3311	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ELL2--TRIP12	49	73	ELL2	4915	chr5:95249475:-	TRIP12	62537	chr2:230634041:-	ONLY_REF_SPLICE	YES	252	168	0.33	0.42	0.7013	1.0448	{Klijn_CCL:Sarcomatoid=1},ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	MG63_BONE	0.33	0.42	1.7461	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	EXT1--RP11-96B2.1	52	8	EXT1	2769	chr8:119122324:-	RP11-96B2.1	24517	chr8:123499705:-	ONLY_REF_SPLICE	YES	753	0	0.07	1	0.7442	0.1145	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,RP11-96B2.1->chr8:123497754-123502054:-	MG63_BONE	0.07	1	0.8587	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ST3GAL1--RP11-946L20.2	45	15	ST3GAL1	5010	chr8:134558017:-	RP11-946L20.2	28672	chr8:112017878:-	ONLY_REF_SPLICE	YES	123	0	0.33	1	0.6441	0.2147	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,RP11-946L20.2->chr8:111949919-112039662:-	MG63_BONE	0.33	1	0.8588	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	DNER--ELL2	4	172	DNER	7269	chr2:230444927:-	ELL2	26965	chr5:95242486:-	INCL_NON_REF_SPLICE	YES	324	255	0.35	0.41	0.0572	2.4617	{Klijn_CCL:Sarcomatoid=1},DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing,ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2	MG63_BONE	0.35	0.41	2.5189	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ELL2--TRIP12	24	73	ELL2	4911	chr5:95249479:-	TRIP12	62537	chr2:230634041:-	INCL_NON_REF_SPLICE	YES	222	168	0.3	0.37	0.3435	1.0448	{Klijn_CCL:Sarcomatoid=1},ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	MG63_BONE	0.3	0.37	1.3883	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	CLIP4--EPHB4	33	17	CLIP4	15063	chr2:29375694:+	EPHB4	36359	chr7:100417918:-	ONLY_REF_SPLICE	YES	22	32	0.69	0.61	0.4723	0.2433	{Klijn_CCL:Sarcomatoid=1},CLIP4->CAP-Gly_domain_containing_linker_protein_family_member_4,chr2:29320571-29412509:+,EPHB4->EPH_receptor_B4,chr7:100400187-100425121:-	MG63_BONE	0.61	0.69	0.7156	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MTAP--BNC2	16	73	MTAP	9899	chr9:21854869:+	BNC2	32957	chr9:16437543:-	INCL_NON_REF_SPLICE	YES	0	10	1	0.9	0.229	1.0448	{Klijn_CCL:Sarcomatoid=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,BNC2->basonuclin_2,chr9:16409501-16870841:-	MG63_BONE	0.9	1	1.2738	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	STX2--GCNT2	26	14	STX2	9724	chr12:131283070:-	GCNT2	19070	chr6:10509320:+	ONLY_REF_SPLICE	YES	50	0	0.44	1	0.3721	0.2004	STX2->chr12:131274145-131323811:-,syntaxin_2,GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group)	MG63_BONE	0.44	1	0.5725	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MTAP--BNC2	11	72	MTAP	9899	chr9:21854869:+	BNC2	32965	chr9:16437535:-	INCL_NON_REF_SPLICE	YES	0	10	1	0.89	0.1574	1.0305	{Klijn_CCL:Sarcomatoid=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,BNC2->basonuclin_2,chr9:16409501-16870841:-	MG63_BONE	0.89	1	1.1879	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	TRAPPC9--COL22A1	16	3	TRAPPC9	9369	chr8:141407719:-	COL22A1	129703	chr8:139617012:-	ONLY_REF_SPLICE	YES	16	0	0.54	1	0.229	0.0429	{Klijn_CCL:Sarcomatoid=1},TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,COL22A1->chr8:139600478-139926249:-,collagen_type_XXII_alpha_1	MG63_BONE	0.54	1	0.2719	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ELL2--TRIP12	3	54	ELL2	3751	chr5:95255128:-	TRIP12	62537	chr2:230634041:-	ONLY_REF_SPLICE	YES	279	168	0.17	0.25	0.0429	0.7729	{Klijn_CCL:Sarcomatoid=1},ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	MG63_BONE	0.17	0.25	0.8158	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MROH1--PLEC	11	4	MROH1	18307	chr8:145278133:+	PLEC	42282	chr8:145049543:-	ONLY_REF_SPLICE	YES	3	0	0.83	1	0.1574	0.0572	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,PLEC->chr8:144989321-145050902:-,plectin	MG63_BONE	0.83	1	0.2146	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MROH1--PARP10	7	6	MROH1	18307	chr8:145278133:+	PARP10	51096	chr8:145052249:-	ONLY_REF_SPLICE	YES	3	12	0.81	0.52	0.1002	0.0859	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,PARP10->chr8:145051321-145086940:-,poly(ADP-ribose)_polymerase_family_member_10	MG63_BONE	0.52	0.81	0.1861	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	STX2--GCNT2	6	5	STX2	9724	chr12:131283070:-	GCNT2	21562	chr6:10527707:+	ONLY_REF_SPLICE	YES	50	0	0.18	1	0.0859	0.0716	STX2->chr12:131274145-131323811:-,syntaxin_2,GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group)	MG63_BONE	0.18	1	0.1575	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	CMBL--SEMA5A	6	3	CMBL	1402	chr5:10307737:-	SEMA5A	17448	chr5:9337924:-	ONLY_REF_SPLICE	YES	157	13	0.05	0.41	0.0859	0.0429	CMBL->carboxymethylenebutenolidase_homolog_(Pseudomonas),chr5:10275987-10308138:-,SEMA5A->chr5:9035138-9546187:-,semaphorin_5A	MG63_BONE	0.05	0.41	0.1288	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MTAP--BNC2	4	11	MTAP	8659	chr9:21838009:+	BNC2	32978	chr9:16437522:-	ONLY_REF_SPLICE	YES	114	10	0.12	0.6	0.0572	0.1574	{Klijn_CCL:Sarcomatoid=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,BNC2->basonuclin_2,chr9:16409501-16870841:-	MG63_BONE	0.12	0.6	0.2146	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	FBXW11--RUFY1	4	1	FBXW11	1416	chr5:171433462:-	RUFY1	29525	chr5:178987026:+	ONLY_REF_SPLICE	YES	60	7	0.08	0.42	0.0572	0.0143	FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,RUFY1->RUN_and_FYVE_domain_containing_1,chr5:178977559-179037027:+	MG63_BONE	0.08	0.42	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	SMAP1--RECK	4	1	SMAP1	1366	chr6:71377844:+	RECK	37791	chr9:36102091:+	ONLY_REF_SPLICE	YES	12	127	0.29	0.04	0.0572	0.0143	SMAP1->Oncogene{Bushman},chr6:71377479-71571718:+,small_ArfGAP_1,RECK->chr9:36036430-36124448:+,reversion_inducing_cysteine_rich_protein_with_kazal_motifs	MG63_BONE	0.04	0.29	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	CTGF--RPS28	4	0	CTGF	1152	chr6:132272362:-	RPS28	7541	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0	GTEx&tcga_normals:1/3694=0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MG63_BONE	1	1	0.0572	TRUE	0	0	0	5	0	TRUE	ACH-000359
MG63_BONE	JARID2--RP11-30J20.1	4	0	JARID2	6950	chr6:15452406:+	RP11-30J20.1	42732	chr8:137997081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,RP11-30J20.1->chr8:137543041-137997178:+	MG63_BONE	1	1	0.0572	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	STX2--GCNT2	4	0	STX2	9724	chr12:131283070:-	GCNT2	31288	chr6:10621584:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0572	0	STX2->chr12:131274145-131323811:-,syntaxin_2,GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group)	MG63_BONE	1	1	0.0572	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MTAP--BNC2	3	3	MTAP	9899	chr9:21854869:+	BNC2	46906	chr9:16413025:-	INCL_NON_REF_SPLICE	YES	0	95	1	0.06	0.0429	0.0429	{Klijn_CCL:Sarcomatoid=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,BNC2->basonuclin_2,chr9:16409501-16870841:-	MG63_BONE	0.06	1	0.0858	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	SCUBE3--RP11-489O18.1	3	2	SCUBE3	15527	chr6:35214062:+	RP11-489O18.1	25308	chr8:139085144:+	ONLY_REF_SPLICE	YES	118	0	0.04	1	0.0429	0.0286	SCUBE3->chr6:35182190-35220856:+,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_3,RP11-489O18.1->chr8:139075511-139085483:+	MG63_BONE	0.04	1	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	SMAP1--RECK	3	2	SMAP1	1366	chr6:71377844:+	RECK	36578	chr9:36100328:+	ONLY_REF_SPLICE	NO	12	137	0.29	0.04	0.0429	0.0286	SMAP1->Oncogene{Bushman},chr6:71377479-71571718:+,small_ArfGAP_1,RECK->chr9:36036430-36124448:+,reversion_inducing_cysteine_rich_protein_with_kazal_motifs	MG63_BONE	0.04	0.29	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	CTC-340A15.2--CTC-535M15.2	3	0	CTC-340A15.2	1501	chr5:163724202:+	CTC-535M15.2	32673	chr5:165204982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0	CTC-340A15.2->chr5:163723702-164598649:+,CTC-535M15.2->chr5:164776036-165205694:+	MG63_BONE	1	1	0.0429	TRUE	0	0	0	3	0	TRUE	ACH-000359
MG63_BONE	POLE--ANKLE2	3	0	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	MG63_BONE	1	1	0.0429	TRUE	0	0	0	11	0	TRUE	ACH-000359
MG63_BONE	ST3GAL1--RP11-946L20.2	1	7	ST3GAL1	1248	chr8:134583936:-	RP11-946L20.2	28672	chr8:112017878:-	ONLY_REF_SPLICE	YES	187	0	0.04	1	0.0143	0.1002	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,RP11-946L20.2->chr8:111949919-112039662:-	MG63_BONE	0.04	1	0.1145	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	CNTLN--PCAT1	2	1	CNTLN	20028	chr9:17342442:+	PCAT1	44298	chr8:128018800:+	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0286	0.0143	CNTLN->centlein,chr9:17134980-17503921:+,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	MG63_BONE	0.3	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ARMC6--CTC-429P9.4	2	0	ARMC6	1356	chr19:19144739:+	CTC-429P9.4	20734	chr19:16758072:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+,CTC-429P9.4->chr19:16688453-16770926:-	MG63_BONE	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ATP8A1--UNC13B	1	4	ATP8A1	17063	chr4:42576636:-	UNC13B	63174	chr9:35370315:+	ONLY_REF_SPLICE	NO	0	14	1	0.26	0.0143	0.0572	ATP8A1->ATPase_phospholipid_transporting_8A1,chr4:42410390-42659122:-,UNC13B->chr9:35161999-35405335:+,unc-13_homolog_B_(C._elegans)	MG63_BONE	0.26	1	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ATP8A1--UNC13B	1	4	ATP8A1	17063	chr4:42576636:-	UNC13B	62127	chr9:35366944:+	ONLY_REF_SPLICE	NO	0	16	1	0.24	0.0143	0.0572	ATP8A1->ATPase_phospholipid_transporting_8A1,chr4:42410390-42659122:-,UNC13B->chr9:35161999-35405335:+,unc-13_homolog_B_(C._elegans)	MG63_BONE	0.24	1	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	KAT8--RP11-196G11.1	2	0	KAT8	8035	chr16:31139460:+	RP11-196G11.1	15923	chr16:31102663:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	LOCAL_INVERSION:+:-:[20798],KAT8->chr16:31127075-31142714:+,lysine_acetyltransferase_8,RP11-196G11.1->chr16:31094760-31106277:-	MG63_BONE	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MROH1--PARP10	1	4	MROH1	18307	chr8:145278133:+	PARP10	51347	chr8:145051998:-	ONLY_REF_SPLICE	YES	3	28	0.62	0.15	0.0143	0.0572	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,PARP10->chr8:145051321-145086940:-,poly(ADP-ribose)_polymerase_family_member_10	MG63_BONE	0.15	0.62	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MTAP--BNC2	1	4	MTAP	7556	chr9:21818201:+	BNC2	32978	chr9:16437522:-	ONLY_REF_SPLICE	YES	127	10	0.04	0.33	0.0143	0.0572	{Klijn_CCL:Sarcomatoid=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,BNC2->basonuclin_2,chr9:16409501-16870841:-	MG63_BONE	0.04	0.33	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MTAP--MIR31HG	2	0	MTAP	8659	chr9:21838009:+	MIR31HG	25739	chr9:21455943:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,MIR31HG->MIR31_host_gene,chr9:21455641-21559668:-	MG63_BONE	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	SCFD2--FIP1L1	2	0	SCFD2	4269	chr4:54179803:-	FIP1L1	22651	chr4:54265897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	GTEx_FI:{Pancreas=[count:1=pct:0.6],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=6;pct=0.07%;dist=Ovary=1,Prostate=1,Liver=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[11568],SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	MG63_BONE	1	1	0.0286	TRUE	0	0	0	2	0	TRUE	ACH-000359
MG63_BONE	LINC00578--TBL1XR1	1	1	LINC00578	1190	chr3:177159898:+	TBL1XR1	14574	chr3:176816329:-	ONLY_REF_SPLICE	YES	7	21	0.22	0.09	0.0143	0.0143	LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1	MG63_BONE	0.09	0.22	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000359
NCIH2073_LUNG	PTK2--WI2-1896O14.1	542	134	PTK2	15654	chr8:141874411:-	WI2-1896O14.1	65308	chr1:144679969:-	ONLY_REF_SPLICE	YES	156	0	0.81	1	5.2379	1.295	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,WI2-1896O14.1->chr1:144676874-144679969:-	NCIH2073_LUNG	0.81	1	6.5329	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	ASPH--SPIDR	248	56	ASPH	1328	chr8:62626828:-	SPIDR	71288	chr8:48586363:+	ONLY_REF_SPLICE	YES	511	53	0.37	0.85	2.3967	0.5412	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair	NCIH2073_LUNG	0.37	0.85	2.9379	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PAXIP1--DPP6	201	76	PAXIP1	5140	chr7:154790360:-	DPP6	37842	chr7:154143299:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.9425	0.7345	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[49402],PAXIP1->PAX_interacting_protein_1,chr7:154735397-154794794:-,DPP6->chr7:153584182-154685995:+,dipeptidyl_peptidase_like_6	NCIH2073_LUNG	1	1	2.677	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	AP3D1--R3HCC1L	77	39	AP3D1	5142	chr19:2137010:-	R3HCC1L	38982	chr10:99991269:+	ONLY_REF_SPLICE	YES	92	5	0.56	0.96	0.7441	0.3769	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+	NCIH2073_LUNG	0.56	0.96	1.121	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	UBQLN1--SHC3	75	26	UBQLN1	3972	chr9:86297866:-	SHC3	33129	chr9:91628490:-	ONLY_REF_SPLICE	YES	266	1	0.28	0.99	0.7248	0.2513	{Klijn_CCL:Lung=1},UBQLN1->chr9:86274878-86323118:-,ubiquilin_1,SHC3->SHC_(Src_homology_2_domain_containing)_transforming_protein_3,chr9:91628060-91793682:-	NCIH2073_LUNG	0.28	0.99	0.9761	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	FGD4--RP1-27K12.4	39	3	FGD4	1431	chr12:32552893:+	RP1-27K12.4	38977	chr6:53370952:+	ONLY_REF_SPLICE	YES	4	0	0.91	1	0.3769	0.029	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP1-27K12.4->chr6:53367983-53371717:+	NCIH2073_LUNG	0.91	1	0.4059	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	KIRREL--MPTX1	36	5	KIRREL	1456	chr1:157963518:+	MPTX1	21261	chr1:159246297:+	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.3479	0.0483	KIRREL->chr1:157963063-158070052:+,kin_of_IRRE_like_(Drosophila),MPTX1->chr1:159246293-159247282:+,mucosal_pentraxin_1_(pseudogene)	NCIH2073_LUNG	0.93	1	0.3962	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	CAND1--C12orf56	32	5	CAND1	13431	chr12:67700377:+	C12orf56	32493	chr12:64712760:-	ONLY_REF_SPLICE	YES	186	3	0.17	0.93	0.3092	0.0483	CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1,C12orf56->chr12:64660217-64784972:-,chromosome_12_open_reading_frame_56	NCIH2073_LUNG	0.17	0.93	0.3575	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PDE4D--RP11-479O16.1	23	9	PDE4D	26151	chr5:58571164:-	RP11-479O16.1	58465	chr5:58112961:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.2223	0.087	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	NCIH2073_LUNG	0.89	1	0.3093	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	LRRC1--CA10	23	8	LRRC1	1919	chr6:53660213:+	CA10	32543	chr17:49731097:-	ONLY_REF_SPLICE	YES	7	0	0.82	1	0.2223	0.0773	{Klijn_CCL:Lung=1},LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	NCIH2073_LUNG	0.82	1	0.2996	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MPP6--PHF14	23	1	MPP6	1326	chr7:24613212:+	PHF14	44141	chr7:11101418:+	ONLY_REF_SPLICE	YES	0	53	1	0.31	0.2223	0.0097	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH2073_LUNG	0.31	1	0.232	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	TSPAN31--RPS11P6	17	10	TSPAN31	1189	chr12:58131984:+	RPS11P6	16220	chr12:64782813:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1643	0.0966	TSPAN31->chr12:58131796-58143994:+,tetraspanin_31,RPS11P6->chr12:64616117-64790845:+,ribosomal_protein_S11_pseudogene_6	NCIH2073_LUNG	1	1	0.2609	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	KMT2C--AC008060.7	18	2	KMT2C	1380	chr7:152132711:-	AC008060.7	76083	chr7:155187741:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.174	0.0193	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,AC008060.7->chr7:155174771-155189051:+	NCIH2073_LUNG	1	1	0.1933	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	CTDSP2--RP11-542B15.1	18	0	CTDSP2	1368	chr12:58240155:-	RP11-542B15.1	18126	chr12:67959294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.174	0	CTDSP2->CTD_small_phosphatase_2,chr12:58213710-58240522:-,RP11-542B15.1->chr12:67913609-67960906:+	NCIH2073_LUNG	1	1	0.174	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PCMTD1--RP1-214M20.2	17	4	PCMTD1	7395	chr8:52758221:-	RP1-214M20.2	24433	chr6:52810263:-	ONLY_REF_SPLICE	YES	21	0	0.5	1	0.1643	0.0387	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP1-214M20.2->chr6:52804524-52822319:-	NCIH2073_LUNG	0.5	1	0.203	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PRIM1--RP11-110A12.2	13	6	PRIM1	9806	chr12:57132218:-	RP11-110A12.2	19328	chr12:55828915:-	ONLY_REF_SPLICE	YES	28	0	0.4	1	0.1256	0.058	PRIM1->chr12:57125380-57146157:-,primase_(DNA)_subunit_1,RP11-110A12.2->chr12:55828521-55979255:-	NCIH2073_LUNG	0.4	1	0.1836	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	RP11-123O10.4--RP11-314D7.1	13	3	RP11-123O10.4	1113	chr12:67462830:-	RP11-314D7.1	5197	chr12:73537634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1256	0.029	RP11-123O10.4->chr12:67285656-67462942:-,RP11-314D7.1->chr12:73509737-73537638:-	NCIH2073_LUNG	1	1	0.1546	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	LINC00511--RP11-264B14.1	13	1	LINC00511	8867	chr17:70588342:-	RP11-264B14.1	34056	chr17:59112135:-	ONLY_REF_SPLICE	YES	8	1	0.64	0.93	0.1256	0.0097	LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,RP11-264B14.1->chr17:59111997-59147483:-	NCIH2073_LUNG	0.64	0.93	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PTK2--WI2-1896O14.1	10	7	PTK2	12741	chr8:141900764:-	WI2-1896O14.1	65308	chr1:144679969:-	INCL_NON_REF_SPLICE	YES	236	0	0.07	1	0.0966	0.0676	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,WI2-1896O14.1->chr1:144676874-144679969:-	NCIH2073_LUNG	0.07	1	0.1642	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	R3HCC1L--PLEKHJ1	10	4	R3HCC1L	7543	chr10:99969656:+	PLEKHJ1	22844	chr19:2230611:-	ONLY_REF_SPLICE	YES	4	3	0.78	0.82	0.0966	0.0387	R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+,PLEKHJ1->chr19:2230002-2237703:-,pleckstrin_homology_domain_containing_J1	NCIH2073_LUNG	0.78	0.82	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	LINC00265--HDAC9	9	3	LINC00265	1413	chr7:39773643:+	HDAC9	49626	chr7:18788628:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.087	0.029	LINC00265->chr7:39773231-39832691:+,long_intergenic_non-protein_coding_RNA_265,HDAC9->chr7:18126572-19042039:+,histone_deacetylase_9	NCIH2073_LUNG	0.92	1	0.116	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	AP3D1--R3HCC1L	8	6	AP3D1	3534	chr19:2138618:-	R3HCC1L	38982	chr10:99991269:+	ONLY_REF_SPLICE	YES	59	5	0.19	0.74	0.0773	0.058	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+	NCIH2073_LUNG	0.19	0.74	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	AP3D1--R3HCC1L	5	18	AP3D1	4426	chr19:2137726:-	R3HCC1L	38982	chr10:99991269:+	ONLY_REF_SPLICE	YES	151	5	0.13	0.82	0.0483	0.174	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+	NCIH2073_LUNG	0.13	0.82	0.2223	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	TLE1--LYRM5	9	1	TLE1	4193	chr9:84300591:-	LYRM5	28017	chr12:25356854:+	ONLY_REF_SPLICE	YES	15	7	0.4	0.59	0.087	0.0097	TLE1->chr9:84198598-84304220:-,transducin_like_enhancer_of_split_1,LYRM5->LYR_motif_containing_5,chr12:25348150-25362579:+	NCIH2073_LUNG	0.4	0.59	0.0967	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	XRCC6BP1--RP11-629N8.3	9	1	XRCC6BP1	6790	chr12:58347472:+	RP11-629N8.3	13715	chr12:65172851:+	ONLY_REF_SPLICE	YES	24	0	0.29	1	0.087	0.0097	XRCC6BP1->chr12:58335324-58351052:+,RP11-629N8.3->chr12:65153301-65173098:+	NCIH2073_LUNG	0.29	1	0.0967	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	UBQLN1--SHC3	9	0	UBQLN1	1704	chr9:86322415:-	SHC3	33129	chr9:91628490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.087	0	{Klijn_CCL:Lung=1},UBQLN1->chr9:86274878-86323118:-,ubiquilin_1,SHC3->SHC_(Src_homology_2_domain_containing)_transforming_protein_3,chr9:91628060-91793682:-	NCIH2073_LUNG	1	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	LINC00511--RP11-264B14.1	8	1	LINC00511	8867	chr17:70588342:-	RP11-264B14.1	32884	chr17:59113745:-	ONLY_REF_SPLICE	YES	8	0	0.53	1	0.0773	0.0097	LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,RP11-264B14.1->chr17:59111997-59147483:-	NCIH2073_LUNG	0.53	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PDE4D--RP11-479O16.1	8	1	PDE4D	19661	chr5:59064073:-	RP11-479O16.1	58465	chr5:58112961:-	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0773	0.0097	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	NCIH2073_LUNG	0.69	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MACROD1--ROM1	7	2	MACROD1	3565	chr11:63918711:-	ROM1	16418	chr11:62381730:+	ONLY_REF_SPLICE	YES	9	1	0.5	0.9	0.0676	0.0193	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,ROM1->chr11:62379194-62382592:+,retinal_outer_segment_membrane_protein_1	NCIH2073_LUNG	0.5	0.9	0.0869	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PTK2--WI2-1896O14.1	5	9	PTK2	12782	chr8:141900723:-	WI2-1896O14.1	65308	chr1:144679969:-	INCL_NON_REF_SPLICE	YES	245	0	0.05	1	0.0483	0.087	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,WI2-1896O14.1->chr1:144676874-144679969:-	NCIH2073_LUNG	0.05	1	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	AC019221.4--LINGO2	7	0	AC019221.4	1101	chr2:234263320:+	LINGO2	7629	chr9:28670278:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0	AC019221.4->chr2:234263220-234301045:+,LINGO2->chr9:27948076-28670283:-,leucine_rich_repeat_and_Ig_domain_containing_2	NCIH2073_LUNG	1	1	0.0676	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	RP11-123O10.4--RP11-314D7.1	7	0	RP11-123O10.4	1113	chr12:67462830:-	RP11-314D7.1	6300	chr12:73522941:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0676	0	RP11-123O10.4->chr12:67285656-67462942:-,RP11-314D7.1->chr12:73509737-73537638:-	NCIH2073_LUNG	1	1	0.0676	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	CLIC5--PXDNL	6	2	CLIC5	7603	chr6:45909284:-	PXDNL	28950	chr8:52412330:-	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.058	0.0193	CLIC5->chloride_intracellular_channel_5,chr6:45868045-46048132:-,PXDNL->chr8:52232138-52722005:-,peroxidasin_like	NCIH2073_LUNG	0.62	1	0.0773	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MPP6--PHF14	6	1	MPP6	1326	chr7:24613212:+	PHF14	51409	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	31	1	0.18	0.058	0.0097	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH2073_LUNG	0.18	1	0.0677	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PTK2--WI2-1896O14.1	2	16	PTK2	12863	chr8:141900642:-	WI2-1896O14.1	65308	chr1:144679969:-	ONLY_REF_SPLICE	YES	246	0	0.07	1	0.0193	0.1546	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,WI2-1896O14.1->chr1:144676874-144679969:-	NCIH2073_LUNG	0.07	1	0.1739	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MPP6--PHF14	4	1	MPP6	1326	chr7:24613212:+	PHF14	44314	chr7:11101591:+	ONLY_REF_SPLICE	YES	0	50	1	0.09	0.0387	0.0097	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH2073_LUNG	0.09	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MPP6--PHF14	3	3	MPP6	2011	chr7:24613897:+	PHF14	44141	chr7:11101418:+	ONLY_REF_SPLICE	YES	1	53	0.86	0.1	0.029	0.029	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH2073_LUNG	0.1	0.86	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	FCHSD2--SLC22A20	3	2	FCHSD2	4185	chr11:72794740:-	SLC22A20	37531	chr11:65003880:+	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.029	0.0193	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,SLC22A20->chr11:64981311-65010228:+,solute_carrier_family_22_member_20	NCIH2073_LUNG	0.36	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	CAND1--C12orf56	3	0	CAND1	12146	chr12:67699092:+	C12orf56	32493	chr12:64712760:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1,C12orf56->chr12:64660217-64784972:-,chromosome_12_open_reading_frame_56	NCIH2073_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	FGD4--RP1-27K12.4	3	0	FGD4	1431	chr12:32552893:+	RP1-27K12.4	39151	chr6:53371126:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP1-27K12.4->chr6:53367983-53371717:+	NCIH2073_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	FGD4--RP1-27K12.4	3	0	FGD4	1431	chr12:32552893:+	RP1-27K12.4	39621	chr6:53371596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP1-27K12.4->chr6:53367983-53371717:+	NCIH2073_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PDE4D--RP11-479O16.1	3	0	PDE4D	19661	chr5:59064073:-	RP11-479O16.1	62765	chr5:58037827:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	NCIH2073_LUNG	1	1	0.029	TRUE	0	1	0	1	1	TRUE	ACH-000590
NCIH2073_LUNG	R3HCC1L--PLEKHJ1	2	4	R3HCC1L	8585	chr10:99971105:+	PLEKHJ1	22844	chr19:2230611:-	ONLY_REF_SPLICE	YES	5	3	0.55	0.67	0.0193	0.0387	R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+,PLEKHJ1->chr19:2230002-2237703:-,pleckstrin_homology_domain_containing_J1	NCIH2073_LUNG	0.55	0.67	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	TBC1D30--RP11-314D7.2	3	0	TBC1D30	2643	chr12:65179825:+	RP11-314D7.2	29184	chr12:73556974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	TBC1D30->TBC1_domain_family_member_30,chr12:65174589-65274812:+,RP11-314D7.2->chr12:73552970-73602097:+	NCIH2073_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PDE4D--RP11-479O16.1	2	3	PDE4D	26151	chr5:58571164:-	RP11-479O16.1	62765	chr5:58037827:-	ONLY_REF_SPLICE	YES	4	3	0.56	0.62	0.0193	0.029	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	NCIH2073_LUNG	0.56	0.62	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	SKAP2--AOAH	2	1	SKAP2	9876	chr7:26883649:-	AOAH	28807	chr7:36726399:-	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0193	0.0097	SKAP2->chr7:26706681-27034858:-,src_kinase_associated_phosphoprotein_2,AOAH->acyloxyacyl_hydrolase,chr7:36552456-36764154:-	NCIH2073_LUNG	0.27	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	DPY19L1P1--ITSN2	2	0	DPY19L1P1	5676	chr7:32763125:-	ITSN2	63353	chr2:24443935:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	DPY19L1P1->DPY19L1_pseudogene_1,chr7:32620561-32801399:-,ITSN2->chr2:24425733-24583583:-,intersectin_2	NCIH2073_LUNG	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MEX3C--RP11-267C16.1	2	0	MEX3C	2797	chr18:48722937:-	RP11-267C16.1	25359	chr18:49086963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	MEX3C->chr18:48700920-48744674:-,mex-3_RNA_binding_family_member_C,RP11-267C16.1->chr18:48872619-49088939:+	NCIH2073_LUNG	1	1	0.0193	TRUE	0	1	0	1	1	TRUE	ACH-000590
NCIH2073_LUNG	MKLN1-AS1--EXOC6B	2	0	MKLN1-AS1	3457	chr7:130792479:-	EXOC6B	20507	chr2:72968598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	MKLN1-AS1->chr7:130626519-130794935:-,EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B	NCIH2073_LUNG	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PDE4D--RP11-479O16.1	1	4	PDE4D	26151	chr5:58571164:-	RP11-479O16.1	60623	chr5:58110572:-	ONLY_REF_SPLICE	YES	4	1	0.56	0.83	0.0097	0.0387	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	NCIH2073_LUNG	0.56	0.83	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	TMEM67--C10orf76	2	0	TMEM67	4381	chr8:94770804:+	C10orf76	53491	chr10:103755112:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	TMEM67->chr8:94767072-94831462:+,transmembrane_protein_67,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	NCIH2073_LUNG	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MPP6--PHF14	1	2	MPP6	2011	chr7:24613897:+	PHF14	44314	chr7:11101591:+	ONLY_REF_SPLICE	YES	1	50	0.75	0.06	0.0097	0.0193	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH2073_LUNG	0.06	0.75	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	AP3D1--R3HCC1L	1	1	AP3D1	2438	chr19:2151238:-	R3HCC1L	38982	chr10:99991269:+	ONLY_REF_SPLICE	YES	16	5	0.11	0.29	0.0097	0.0097	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+	NCIH2073_LUNG	0.11	0.29	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PDE4D--RP11-479O16.1	1	1	PDE4D	19661	chr5:59064073:-	RP11-479O16.1	60623	chr5:58110572:-	ONLY_REF_SPLICE	YES	4	1	0.33	0.67	0.0097	0.0097	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	NCIH2073_LUNG	0.33	0.67	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	VPS41--ABCA13	1	1	VPS41	24673	chr7:38797954:-	ABCA13	97661	chr7:48494634:+	ONLY_REF_SPLICE	YES	26	0	0.07	1	0.0097	0.0097	VPS41->VPS41,_HOPS_complex_subunit,chr7:38762563-38971994:-,ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+	NCIH2073_LUNG	0.07	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	XRCC6BP1--TBC1D30	1	1	XRCC6BP1	6790	chr12:58347472:+	TBC1D30	12852	chr12:65179661:+	ONLY_REF_SPLICE	YES	24	7	0.08	0.22	0.0097	0.0097	XRCC6BP1->chr12:58335324-58351052:+,TBC1D30->TBC1_domain_family_member_30,chr12:65174589-65274812:+	NCIH2073_LUNG	0.08	0.22	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000590
YD10B_UPPER_AERODIGESTIVE_TRACT	TMC6--TK1	9	4	TMC6	6237	chr17:76121807:-	TK1	22209	chr17:76183302:-	INCL_NON_REF_SPLICE	YES	8	0	0.62	1	0.1672	0.0743	LOCAL_REARRANGEMENT:-:[41672],TMC6->chr17:76106539-76128488:-,transmembrane_channel_like_6,TK1->Oncogene{Bushman},chr17:76170160-76183314:-,thymidine_kinase_1	YD10B_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.2415	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	SMARCA4--TM9SF2	4	0	SMARCA4	33650	chr19:11144108:+	TM9SF2	46782	chr13:100153752:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,TM9SF2->chr13:100153671-100216260:+,transmembrane_9_superfamily_member_2	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	AEBP2--UNK	3	0	AEBP2	12885	chr12:19672865:+	UNK	22367	chr17:73790088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	COL7A1--SF3B3	3	0	COL7A1	9223	chr3:48624478:-	SF3B3	63137	chr16:70605032:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1,SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	CREB3--FAM192A	3	0	CREB3	4583	chr9:35736537:+	FAM192A	19196	chr16:57188104:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	CREB3->cAMP_responsive_element_binding_protein_3,chr9:35732332-35737001:+,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	EIF3A--EML4	3	0	EIF3A	15081	chr10:120809396:-	EML4	30400	chr2:42488277:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A,EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	LDHB--HNRNPH1	3	0	LDHB	5269	chr12:21807502:-	HNRNPH1	26593	chr5:179043145:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	LDHB->chr12:21788276-21910791:-,lactate_dehydrogenase_B,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	MT2A--TMOD3	3	0	MT2A	2181	chr16:56643291:+	TMOD3	20748	chr15:52203211:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	MT2A->chr16:56642111-56643409:+,metallothionein_2A,TMOD3->chr15:52121825-52239492:+,tropomodulin_3	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	NUP62--BHLHE40	3	0	NUP62	11243	chr19:50410554:-	BHLHE40	18389	chr3:5024699:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	NUP62->chr19:50410082-50433020:-,nucleoporin_62kDa,BHLHE40->basic_helix-loop-helix_family_member_e40,chr3:5020801-5027008:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	PGD--AGFG1	3	0	PGD	13685	chr1:10480140:+	AGFG1	33973	chr2:228419237:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	PGD->chr1:10458649-10480201:+,phosphogluconate_dehydrogenase,AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	PIGQ--FGFBP1	3	0	PIGQ	6873	chr16:624349:+	FGFBP1	19998	chr4:15939949:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	PIGQ->chr16:616995-634136:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_Q,FGFBP1->chr4:15937192-15940363:-,fibroblast_growth_factor_binding_protein_1	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	SGK1--SLC52A2	3	0	SGK1	20002	chr6:134491021:-	SLC52A2	28332	chr8:145584047:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	SGK1->chr6:134490384-134639250:-,serum/glucocorticoid_regulated_kinase_1,SLC52A2->chr8:145577795-145584932:+,solute_carrier_family_52_member_2	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	SLC8A1--MYO1B	3	0	SLC8A1	7913	chr2:40656421:-	MYO1B	69894	chr2:192266537:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	SLC8A1->chr2:40324410-40838193:-,solute_carrier_family_8_member_A1,MYO1B->chr2:192109911-192290115:+,myosin_IB	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	TBC1D10B--TRA2B	3	0	TBC1D10B	10011	chr16:30368632:-	TRA2B	23708	chr3:185642420:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	TBC1D10B->TBC1_domain_family_member_10B,chr16:30368423-30381585:-,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	AC004980.7--PRDM10	2	0	AC004980.7	2605	chr7:76180839:+	PRDM10	12225	chr11:129830977:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	AC004980.7->chr7:76178677-76257299:+,PRDM10->PR_domain_10,chr11:129769601-129872730:-	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	C7orf50--SUN1	2	0	C7orf50	3078	chr7:1166893:-	SUN1	41103	chr7:908986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	2	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	C9orf3--MKI67	2	0	C9orf3	20609	chr9:97730083:+	MKI67	44370	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	CASP10--NOP58	2	0	CASP10	12932	chr2:202074285:+	NOP58	23756	chr2:203139836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	CASP10->caspase_10,chr2:202047604-202094129:+,NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	EFEMP1--WDPCP	2	0	EFEMP1	2780	chr2:56149495:-	WDPCP	28202	chr2:63711797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	EFEMP1->EGF_containing_fibulin-like_extracellular_matrix_protein_1,chr2:56093102-56151274:-,WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	ELK1--KCMF1	2	0	ELK1	6550	chrX:47497150:-	KCMF1	20920	chr2:85280271:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	ELK1->ELK1,_ETS_transcription_factor,Oncogene{Bushman},chrX:47494920-47510003:-,KCMF1->Oncogene{Bushman},chr2:85198216-85286595:+,potassium_channel_modulatory_factor_1	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	GLI3--OGDH	2	0	GLI3	8007	chr7:42187825:-	OGDH	32567	chr7:44663916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	GLI3->GLI_family_zinc_finger_3,Oncogene{Bushman},chr7:42000548-42277469:-,OGDH->chr7:44646171-44748665:+,oxoglutarate_dehydrogenase	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	INADL--SH3RF2	2	0	INADL	7061	chr1:62241006:+	SH3RF2	62241	chr5:145317386:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	INADL->Oncogene{Bushman},chr1:62208149-62629592:+,SH3RF2->SH3_domain_containing_ring_finger_2,chr5:145316142-145461354:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	LMNA--OBSCN	2	0	LMNA	8776	chr1:156085065:+	OBSCN	26186	chr1:228401142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	LMNA->chr1:156052364-156109880:+,lamin_A/C,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	NDE1--CNTROB	2	0	NDE1	3608	chr16:15744151:+	CNTROB	30122	chr17:7839684:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	NDE1->chr16:15737124-15820210:+,nudE_neurodevelopment_protein_1,CNTROB->centrobin,_centriole_duplication_and_spindle_assembly_protein,chr17:7835419-7853236:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	NDRG1--RNH1	2	0	NDRG1	10086	chr8:134276790:-	RNH1	36682	chr11:502249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-,RNH1->chr11:494512-507300:-,ribonuclease/angiogenin_inhibitor_1	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	SMIM11--CEP170	2	0	SMIM11	3956	chr21:35757942:+	CEP170	18418	chr1:243388623:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	SMIM11->chr21:35747779-35780164:+,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	TARS--MPHOSPH8	2	0	TARS	5801	chr5:33448837:+	MPHOSPH8	38777	chr13:20245346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	TARS->chr5:33440802-33469644:+,threonyl-tRNA_synthetase,MPHOSPH8->M-phase_phosphoprotein_8,chr13:20207788-20247599:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	UBL7-AS1--TPM1	2	0	UBL7-AS1	4164	chr15:74771619:+	TPM1	15309	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	UBL7-AS1->UBL7_antisense_RNA_1_(head_to_head),chr15:74753606-74773643:+,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	RAP2A--COL4A1	1	1	RAP2A	1563	chr13:98087038:+	COL4A1	51151	chr13:110807744:-	ONLY_REF_SPLICE	YES	7	4	0.22	0.33	0.0186	0.0186	RAP2A->Oncogene{Bushman},RAP2A,_member_of_RAS_oncogene_family,chr13:98086476-98121382:+,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	YD10B_UPPER_AERODIGESTIVE_TRACT	0.22	0.33	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
COLO783_SKIN	MSRA--PVT1	35	22	MSRA	1391	chr8:9912168:+	PVT1	41883	chr8:129108764:+	ONLY_REF_SPLICE	YES	6	34	0.9	0.63	0.3995	0.2511	MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	COLO783_SKIN	0.63	0.9	0.6506	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	NCOA3--EYA2	27	42	NCOA3	1163	chr20:46130763:+	EYA2	46927	chr20:45808446:+	ONLY_REF_SPLICE	YES	29	0	0.7	1	0.3081	0.4793	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	COLO783_SKIN	0.7	1	0.7874	TRUE	0	0	0	2	0	TRUE	ACH-000812
COLO783_SKIN	MSRA--PVT1	30	26	MSRA	1391	chr8:9912168:+	PVT1	39585	chr8:129082406:+	ONLY_REF_SPLICE	YES	6	41	0.9	0.58	0.3424	0.2967	MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	COLO783_SKIN	0.58	0.9	0.6391	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	FANCL--FAM110C	29	11	FANCL	1155	chr2:58468353:-	FAM110C	22301	chr2:41627:-	ONLY_REF_SPLICE	YES	52	0	0.43	1	0.331	0.1255	FANCL->ArcherDX_panel,Fanconi_anemia_complementation_group_L,FoundationOne_panel,chr2:58386378-58468507:-,FAM110C->chr2:38814-46870:-,family_with_sequence_similarity_110_member_C	COLO783_SKIN	0.43	1	0.4565	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	GAB2--NARS2	21	11	GAB2	6290	chr11:77991647:-	NARS2	34308	chr11:78180359:-	ONLY_REF_SPLICE	YES	62	106	0.34	0.23	0.2397	0.1255	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[17613],GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	COLO783_SKIN	0.23	0.34	0.3652	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	TULP4--RP1-249F5.3	14	5	TULP4	15371	chr6:158919844:+	RP1-249F5.3	28124	chr6:160320218:+	ONLY_REF_SPLICE	YES	9	0	0.68	1	0.1598	0.0571	TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP1-249F5.3->chr6:160320218-160323542:+	COLO783_SKIN	0.68	1	0.2169	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	NCOA3--EYA2	5	28	NCOA3	1163	chr20:46130763:+	EYA2	47944	chr20:45809463:+	ONLY_REF_SPLICE	YES	29	9	0.53	0.79	0.0571	0.3196	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	COLO783_SKIN	0.53	0.79	0.3767	TRUE	0	0	0	2	0	TRUE	ACH-000812
COLO783_SKIN	PLEKHM2--KAZN	9	3	PLEKHM2	2867	chr1:16043311:+	KAZN	26420	chr1:15361245:+	ONLY_REF_SPLICE	YES	194	57	0.06	0.17	0.1027	0.0342	PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2,KAZN->chr1:14925200-15444539:+,kazrin,_periplakin_interacting_protein	COLO783_SKIN	0.06	0.17	0.1369	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	MSRA--PVT1	3	26	MSRA	1391	chr8:9912168:+	PVT1	36568	chr8:129021836:+	ONLY_REF_SPLICE	YES	6	38	0.83	0.43	0.0342	0.2967	MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	COLO783_SKIN	0.43	0.83	0.3309	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	PVT1--RP11-667F9.2	8	6	PVT1	10746	chr8:128951922:+	RP11-667F9.2	28754	chr7:64928286:+	ONLY_REF_SPLICE	YES	58	0	0.19	1	0.0913	0.0685	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-667F9.2->chr7:64927984-64928351:+	COLO783_SKIN	0.19	1	0.1598	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	MSRA--PVT1	1	21	MSRA	1391	chr8:9912168:+	PVT1	41886	chr8:129108767:+	ONLY_REF_SPLICE	YES	6	34	0.79	0.39	0.0114	0.2397	MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	COLO783_SKIN	0.39	0.79	0.2511	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	C7orf63--AC002127.4	5	0	C7orf63	2431	chr7:89884796:+	AC002127.4	35122	chr7:88371331:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0571	0	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},C7orf63->chr7:89874488-89940377:+,AC002127.4->chr7:88339945-88386039:+	COLO783_SKIN	1	1	0.0571	TRUE	1	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	C7orf63--AC002127.4	4	0	C7orf63	1371	chr7:89874858:+	AC002127.4	35122	chr7:88371331:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0457	0	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},C7orf63->chr7:89874488-89940377:+,AC002127.4->chr7:88339945-88386039:+	COLO783_SKIN	1	1	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	MDGA2--MTA1	3	4	MDGA2	20956	chr14:47351247:-	MTA1	35744	chr14:105905009:+	ONLY_REF_SPLICE	YES	16	1	0.3	0.88	0.0342	0.0457	MDGA2->MAM_domain_containing_glycosylphosphatidylinositol_anchor_2,chr14:47308826-48144157:-,chr14:47311134-48143999:-,MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1	COLO783_SKIN	0.3	0.88	0.0799	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	NCOA3--EYA2	2	8	NCOA3	1163	chr20:46130763:+	EYA2	49066	chr20:45811939:+	ONLY_REF_SPLICE	YES	29	19	0.26	0.34	0.0228	0.0913	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	COLO783_SKIN	0.26	0.34	0.1141	TRUE	0	0	0	2	0	TRUE	ACH-000812
COLO783_SKIN	PVT1--RP11-667F9.2	3	3	PVT1	8346	chr8:128903244:+	RP11-667F9.2	28754	chr7:64928286:+	ONLY_REF_SPLICE	YES	72	0	0.08	1	0.0342	0.0342	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-667F9.2->chr7:64927984-64928351:+	COLO783_SKIN	0.08	1	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	PVT1--RP11-667F9.2	2	6	PVT1	12825	chr8:128996450:+	RP11-667F9.2	28754	chr7:64928286:+	ONLY_REF_SPLICE	YES	57	0	0.12	1	0.0228	0.0685	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-667F9.2->chr7:64927984-64928351:+	COLO783_SKIN	0.12	1	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	AC040977.1--RCAN1	3	0	AC040977.1	2812	chr17:6915944:-	RCAN1	17281	chr21:35890265:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	AC040977.1->chr17:6915928-6917755:-,RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1	COLO783_SKIN	1	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	TANGO2--CECR1	2	4	TANGO2	14823	chr22:20050965:+	CECR1	31458	chr22:17669337:-	ONLY_REF_SPLICE	YES	141	4	0.04	0.6	0.0228	0.0457	TANGO2->chr22:20004537-20053449:+,transport_and_golgi_organization_2_homolog,CECR1->cat_eye_syndrome_chromosome_region,_candidate_1,chr22:17660194-17702879:-	COLO783_SKIN	0.04	0.6	0.0685	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	ATAD3B--MRPL20	2	0	ATAD3B	14283	chr1:1426051:+	MRPL20	22075	chr1:1341266:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	LOCAL_INVERSION:+:-:[64450],ATAD3B->ATPase_family,_AAA_domain_containing_3B,chr1:1407143-1433228:+,MRPL20->chr1:1337288-1342693:-,mitochondrial_ribosomal_protein_L20	COLO783_SKIN	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	KIAA0930--SNX6	2	0	KIAA0930	12969	chr22:45598871:-	SNX6	28156	chr14:35078948:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	KIAA0930->KIAA0930,chr22:45586219-45636650:-,SNX6->chr14:35030300-35099389:-,sorting_nexin_6	COLO783_SKIN	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	MCM4--HARS2	2	0	MCM4	10146	chr8:48883436:+	HARS2	24466	chr5:140076106:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4,HARS2->chr5:140071011-140078889:+,histidyl-tRNA_synthetase_2,_mitochondrial	COLO783_SKIN	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	PTPRF--STAG2	2	0	PTPRF	14508	chr1:44054671:+	STAG2	73707	chrX:123227868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F,STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2	COLO783_SKIN	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	XRCC5--AC122136.2	2	0	XRCC5	20768	chr2:217026771:+	AC122136.2	30673	chr2:216734987:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,AC122136.2->chr2:216734646-216735241:+	COLO783_SKIN	1	1	0.0228	TRUE	0	1	0	1	0	TRUE	ACH-000812
COLO783_SKIN	PTK2B--EXTL3	1	2	PTK2B	10948	chr8:27255305:+	EXTL3	50028	chr8:28570974:+	ONLY_REF_SPLICE	YES	10	63	0.23	0.05	0.0114	0.0228	PTK2B->chr8:27168999-27316903:+,protein_tyrosine_kinase_2_beta,EXTL3->chr8:28457986-28613116:+,exostosin_like_glycosyltransferase_3	COLO783_SKIN	0.05	0.23	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	C7orf63--AC002127.4	1	1	C7orf63	2431	chr7:89884796:+	AC002127.4	34032	chr7:88362879:+	ONLY_REF_SPLICE	NO	5	0	0.29	1	0.0114	0.0114	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},C7orf63->chr7:89874488-89940377:+,AC002127.4->chr7:88339945-88386039:+	COLO783_SKIN	0.29	1	0.0228	TRUE	1	0	0	1	0	TRUE	ACH-000812
HOP92_LUNG	EXD3--DPH7	72	3	EXD3	1149	chr9:140317566:-	DPH7	36504	chr9:140470619:-	ONLY_REF_SPLICE	YES	3	56	0.96	0.57	0.8473	0.0353	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7	HOP92_LUNG	0.57	0.96	0.8826	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	PTK2--TRAPPC9	35	18	PTK2	19872	chr8:141828376:-	TRAPPC9	126704	chr8:140744445:-	ONLY_REF_SPLICE	YES	102	33	0.34	0.62	0.4119	0.2118	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	HOP92_LUNG	0.34	0.62	0.6237	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	EXD3--DPH7	17	0	EXD3	1149	chr9:140317566:-	DPH7	39804	chr9:140459606:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2001	0	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7	HOP92_LUNG	1	1	0.2001	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	HSD17B11--SPARCL1	16	3	HSD17B11	1526	chr4:88312013:-	SPARCL1	20117	chr4:88420737:-	ONLY_REF_SPLICE	YES	213	0	0.08	1	0.1883	0.0353	LOCAL_REARRANGEMENT:-:[81949],HSD17B11->chr4:88257762-88312538:-,hydroxysteroid_(17-beta)_dehydrogenase_11,SPARCL1->SPARC_like_1,chr4:88394487-88452213:-	HOP92_LUNG	0.08	1	0.2236	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	DNM2--SMARCA4	9	8	DNM2	4114	chr19:10870487:+	SMARCA4	46540	chr19:11094800:+	ONLY_REF_SPLICE	YES	175	114	0.09	0.13	0.1059	0.0941	DNM2->chr19:10828755-10944164:+,dynamin_2,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	HOP92_LUNG	0.09	0.13	0.2	TRUE	0	1	0	1	1	TRUE	ACH-000825
HOP92_LUNG	VIM--TMSB4X	7	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0824	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HOP92_LUNG	1	1	0.0824	TRUE	0	0	0	15	0	TRUE	ACH-000825
HOP92_LUNG	ZNF444--TSGA10	6	2	ZNF444	13634	chr19:56671381:+	TSGA10	38867	chr2:99681587:-	INCL_NON_REF_SPLICE	YES	16	0	0.33	1	0.0706	0.0235	ZNF444->chr19:56643968-56672262:+,zinc_finger_protein_444,TSGA10->chr2:99613724-99771427:-,testis_specific_10	HOP92_LUNG	0.33	1	0.0941	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	EXD3--DPH7	5	3	EXD3	1149	chr9:140317566:-	DPH7	36269	chr9:140470854:-	ONLY_REF_SPLICE	YES	3	54	0.73	0.13	0.0588	0.0353	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7	HOP92_LUNG	0.13	0.73	0.0941	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	RP11-466I1.1--EIF3M	5	0	RP11-466I1.1	2424	chr11:29233312:+	EIF3M	9189	chr11:32608558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0588	0	RP11-466I1.1->chr11:29181503-29288281:+,EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M	HOP92_LUNG	1	1	0.0588	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	VIM--TMSB4X	4	0	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HOP92_LUNG	1	1	0.0471	TRUE	0	0	0	15	0	TRUE	ACH-000825
HOP92_LUNG	INPP4B--RXFP1	2	3	INPP4B	37503	chr4:143114240:-	RXFP1	67559	chr4:159493850:+	ONLY_REF_SPLICE	YES	23	0	0.18	1	0.0235	0.0353	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	HOP92_LUNG	0.18	1	0.0588	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	TROVE2--LINC01031	2	1	TROVE2	6697	chr1:193046180:+	LINC01031	23715	chr1:193334778:+	ONLY_REF_SPLICE	NO	15	0	0.17	1	0.0235	0.0118	TROVE2->TROVE_domain_family_member_2,chr1:193028552-193060907:+,LINC01031->chr1:193273875-193335083:+,long_intergenic_non-protein_coding_RNA_1031	HOP92_LUNG	0.17	1	0.0353	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	CTD-2066L21.3--ZFR	2	0	CTD-2066L21.3	4766	chr5:33023181:-	ZFR	29374	chr5:32364381:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	CTD-2066L21.3->chr5:32925745-33298016:-,ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein	HOP92_LUNG	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	INPP4B--RXFP1	1	4	INPP4B	37503	chr4:143114240:-	RXFP1	65870	chr4:159464870:+	ONLY_REF_SPLICE	NO	23	0	0.18	1	0.0118	0.0471	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	HOP92_LUNG	0.18	1	0.0589	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	NUBPL--CHRM2	2	0	NUBPL	12822	chr14:32142780:+	CHRM2	34025	chr7:136635750:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like,CHRM2->cholinergic_receptor_muscarinic_2,chr7:136553416-136705002:+	HOP92_LUNG	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	SCML1--MAOA	2	0	SCML1	4745	chrX:17764218:+	MAOA	15824	chrX:43542761:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	SCML1->chrX:17755588-17773105:+,sex_comb_on_midleg-like_1_(Drosophila),MAOA->chrX:43515467-43606068:+,monoamine_oxidase_A	HOP92_LUNG	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	GXYLT1--TINAG	1	2	GXYLT1	4845	chr12:42503368:-	TINAG	28683	chr6:54245324:+	ONLY_REF_SPLICE	YES	30	0	0.09	1	0.0118	0.0235	GXYLT1->chr12:42475647-42538681:-,glucoside_xylosyltransferase_1,TINAG->chr6:54172657-54254950:+,tubulointerstitial_nephritis_antigen	HOP92_LUNG	0.09	1	0.0353	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	SFI1--CTA-221G9.11	1	2	SFI1	10500	chr22:31946334:+	CTA-221G9.11	45061	chr22:25498885:-	ONLY_REF_SPLICE	YES	24	0	0.11	1	0.0118	0.0235	SFI1->SFI1_centrin_binding_protein,chr22:31884674-32014572:+,CTA-221G9.11->chr22:25498407-25508659:-	HOP92_LUNG	0.11	1	0.0353	TRUE	0	0	0	1	0	TRUE	ACH-000825
RCM1_LARGE_INTESTINE	MBNL2--RP11-248E9.5	35	8	MBNL2	3876	chr13:97928663:+	RP11-248E9.5	18279	chr12:88189512:+	INCL_NON_REF_SPLICE	YES	107	0	0.29	1	0.3445	0.0787	MBNL2->chr13:97873688-98046374:+,muscleblind_like_splicing_regulator_2,RP11-248E9.5->chr12:88189510-88195805:+	RCM1_LARGE_INTESTINE	0.29	1	0.4232	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	MID1--YIPF6	16	15	MID1	7932	chrX:10534928:-	YIPF6	27545	chrX:67731691:+	ONLY_REF_SPLICE	YES	6	33	0.84	0.48	0.1575	0.1476	{Klijn_CCL:Colo-Rectal=1},MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+	RCM1_LARGE_INTESTINE	0.48	0.84	0.3051	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	APC--KCNN2	10	1	APC	19284	chr5:112164669:+	KCNN2	41045	chr5:113798746:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0984	0.0098	{Klijn_CCL:Colo-Rectal=1},APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,KCNN2->chr5:113696642-113832337:+,potassium_calcium-activated_channel_subfamily_N_member_2	RCM1_LARGE_INTESTINE	1	1	0.1082	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	APC--KCNN2	9	3	APC	21481	chr5:112170862:+	KCNN2	41045	chr5:113798746:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0886	0.0295	{Klijn_CCL:Colo-Rectal=1},APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,KCNN2->chr5:113696642-113832337:+,potassium_calcium-activated_channel_subfamily_N_member_2	RCM1_LARGE_INTESTINE	0.92	1	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	ARHGAP21--LY96	5	1	ARHGAP21	27045	chr10:24878200:-	LY96	36966	chr8:74939024:+	ONLY_REF_SPLICE	YES	58	0	0.09	1	0.0492	0.0098	ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,LY96->chr8:74903587-74941322:+,lymphocyte_antigen_96	RCM1_LARGE_INTESTINE	0.09	1	0.059	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	MID1--YIPF6	3	5	MID1	7818	chrX:10535042:-	YIPF6	27545	chrX:67731691:+	INCL_NON_REF_SPLICE	YES	11	33	0.42	0.2	0.0295	0.0492	{Klijn_CCL:Colo-Rectal=1},MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+	RCM1_LARGE_INTESTINE	0.2	0.42	0.0787	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	RP11-296I10.6--AARS	4	0	RP11-296I10.6	2271	chr16:70277530:-	AARS	24366	chr16:70305875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:-:[6679],RP11-296I10.6->chr16:70253477-70279519:-,AARS->alanyl-tRNA_synthetase,chr16:70286198-70323446:-	RCM1_LARGE_INTESTINE	1	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	MID1--YIPF6	2	0	MID1	3721	chrX:10588330:-	YIPF6	27545	chrX:67731691:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	{Klijn_CCL:Colo-Rectal=1},MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+	RCM1_LARGE_INTESTINE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	PCMTD2--FIP1L1	2	0	PCMTD2	8241	chr20:62896782:+	FIP1L1	24782	chr4:54249940:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	PCMTD2->chr20:62887094-62926855:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_2,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	RCM1_LARGE_INTESTINE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000565
HCC2429_LUNG	BRD4--NUTM1	300	327	BRD4	15381	chr19:15364963:-	NUTM1	33170	chr15:34640170:+	ONLY_REF_SPLICE	YES	54	7	0.92	0.99	1.8118	1.9749	Cosmic{samples=174,mutations=19,papers=13},BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-,NUTM1->NUT_midline_carcinoma_family_member_1,Oncogene{Bushman},chr15:34635516-34649938:+	HCC2429_LUNG	0.92	0.99	3.7867	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	METTL2B--RP11-155G14.6	135	74	METTL2B	1147	chr7:128116929:+	RP11-155G14.6	21665	chr7:128106617:+	ONLY_REF_SPLICE	YES	147	0	0.59	1	0.8153	0.4469	LOCAL_REARRANGEMENT:+:[7532],METTL2B->chr7:128116783-128146656:+,methyltransferase_like_2B,RP11-155G14.6->chr7:128095991-128109251:+	HCC2429_LUNG	0.59	1	1.2622	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	BRD4--NUTM1	19	353	BRD4	15381	chr19:15364963:-	NUTM1	32076	chr15:34638143:+	ONLY_REF_SPLICE	YES	54	0	0.87	1	0.1147	2.1319	Cosmic{samples=174,mutations=19,papers=13},BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-,NUTM1->NUT_midline_carcinoma_family_member_1,Oncogene{Bushman},chr15:34635516-34649938:+	HCC2429_LUNG	0.87	1	2.2466	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	HOXA3--C7orf31	53	53	HOXA3	3622	chr7:27166505:-	C7orf31	24039	chr7:25182433:-	ONLY_REF_SPLICE	YES	0	2	1	0.98	0.3201	0.3201	HOXA3->Oncogene{Bushman},chr7:27145803-27192200:-,homeobox_A3,C7orf31->chr7:25174316-25219975:-,chromosome_7_open_reading_frame_31	HCC2429_LUNG	0.98	1	0.6402	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	YWHAG--DTX2P1	54	28	YWHAG	1310	chr7:75988039:-	DTX2P1	25032	chr7:76669268:+	ONLY_REF_SPLICE	YES	1390	140	0.06	0.37	0.3261	0.1691	YWHAG->chr7:75956116-75988348:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_gamma,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	HCC2429_LUNG	0.06	0.37	0.4952	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	YWHAG--DTX2P1	26	50	YWHAG	1310	chr7:75988039:-	DTX2P1	19368	chr7:76641197:+	ONLY_REF_SPLICE	YES	1390	180	0.05	0.3	0.157	0.302	YWHAG->chr7:75956116-75988348:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_gamma,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	HCC2429_LUNG	0.05	0.3	0.459	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	ATG10--SSBP2	38	0	ATG10	3326	chr5:81272060:+	SSBP2	48359	chr5:80711516:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2295	0	ATG10->autophagy_related_10,chr5:81267844-81572676:+,SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2	HCC2429_LUNG	1	1	0.2295	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	YWHAG--DTX2P1	5	46	YWHAG	1310	chr7:75988039:-	DTX2P1	22779	chr7:76648226:+	ONLY_REF_SPLICE	YES	1390	170	0.04	0.23	0.0302	0.2778	YWHAG->chr7:75956116-75988348:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_gamma,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	HCC2429_LUNG	0.04	0.23	0.308	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	ARMC9--NCL	14	0	ARMC9	25522	chr2:232160966:+	NCL	44782	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	LOCAL_INVERSION:+:-:[78694],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,NCL->chr2:232318242-232348352:-,nucleolin	HCC2429_LUNG	1	1	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	YWHAG--DTX2P1	1	50	YWHAG	1310	chr7:75988039:-	DTX2P1	21595	chr7:76644989:+	ONLY_REF_SPLICE	NO	1390	171	0.04	0.23	0.006	0.302	YWHAG->chr7:75956116-75988348:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_gamma,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	HCC2429_LUNG	0.04	0.23	0.308	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	METTL2B--RP11-155G14.6	1	41	METTL2B	1147	chr7:128116929:+	RP11-155G14.6	22788	chr7:128108899:+	ONLY_REF_SPLICE	YES	147	31	0.22	0.58	0.006	0.2476	LOCAL_REARRANGEMENT:+:[7532],METTL2B->chr7:128116783-128146656:+,methyltransferase_like_2B,RP11-155G14.6->chr7:128095991-128109251:+	HCC2429_LUNG	0.22	0.58	0.2536	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	RASSF6--RP11-447E20.1	10	3	RASSF6	1193	chr4:74486156:-	RP11-447E20.1	20487	chr4:74643447:-	INCL_NON_REF_SPLICE	YES	330	34	0.04	0.28	0.0604	0.0181	RASSF6->Oncogene{Bushman},Ras_association_domain_family_member_6,chr4:74437267-74486348:-,RP11-447E20.1->chr4:74643353-74643777:-	HCC2429_LUNG	0.04	0.28	0.0785	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	CCAT1--CASC11	5	8	CCAT1	1279	chr8:128231055:-	CASC11	11226	chr8:128715488:-	ONLY_REF_SPLICE	YES	313	1	0.04	0.93	0.0302	0.0483	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	HCC2429_LUNG	0.04	0.93	0.0785	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	ARMC9--NCL	6	0	ARMC9	25522	chr2:232160966:+	NCL	44800	chr2:232325470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	LOCAL_INVERSION:+:-:[78694],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,NCL->chr2:232318242-232348352:-,nucleolin	HCC2429_LUNG	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	ETV1--DGKB	4	0	ETV1	11702	chr7:13978742:-	DGKB	59557	chr7:14217776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ETV1->ArcherDX_panel,ETS_variant_1,FoundationOne_panel,Oncogene{Bushman},chr7:13930853-14031050:-,DGKB->chr7:14184674-15014402:-,diacylglycerol_kinase_beta	HCC2429_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	HOXA3--C7orf31	1	11	HOXA3	2437	chr7:27179702:-	C7orf31	24039	chr7:25182433:-	ONLY_REF_SPLICE	NO	6	2	0.67	0.86	0.006	0.0664	HOXA3->Oncogene{Bushman},chr7:27145803-27192200:-,homeobox_A3,C7orf31->chr7:25174316-25219975:-,chromosome_7_open_reading_frame_31	HCC2429_LUNG	0.67	0.86	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	ARMC9--NCL	3	0	ARMC9	25526	chr2:232160970:+	NCL	44798	chr2:232325472:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_INVERSION:+:-:[78694],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,NCL->chr2:232318242-232348352:-,nucleolin	HCC2429_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	ARMC9--NCL	3	0	ARMC9	25522	chr2:232160966:+	NCL	43896	chr2:232326374:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_INVERSION:+:-:[78694],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,NCL->chr2:232318242-232348352:-,nucleolin	HCC2429_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	DCN--XPO1	3	0	DCN	14826	chr12:91550867:-	XPO1	45824	chr2:61711168:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0	DCN->chr12:91539025-91576900:-,decorin,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	HCC2429_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	EEF2--EIF3H	3	0	EEF2	3243	chr19:3983225:-	EIF3H	15911	chr8:117768017:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	HCC2429_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	HOXA-AS2--BRD4	1	7	HOXA-AS2	10303	chr7:27164229:+	BRD4	32628	chr19:15360101:-	ONLY_REF_SPLICE	NO	0	44	1	0.15	0.006	0.0423	HOXA-AS2->HOXA_cluster_antisense_RNA_2,chr7:27147396-27173921:+,BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-	HCC2429_LUNG	0.15	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	ADD3--XPNPEP1	2	0	ADD3	3765	chr10:111768057:+	XPNPEP1	36843	chr10:111648353:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	LOCAL_INVERSION:+:-:[72815],ADD3->Oncogene{Bushman},adducin_3,chr10:111756126-111895323:+,XPNPEP1->X-prolyl_aminopeptidase_(aminopeptidase_P)_1,_soluble,chr10:111624524-111683311:-	HCC2429_LUNG	1	1	0.0121	TRUE	0	1	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	AKT3--MARK3	2	0	AKT3	25845	chr1:243708812:-	MARK3	52114	chr14:103934418:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	PROTCLUST,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	11	0	TRUE	ACH-000143
HCC2429_LUNG	FGD6--UBE2E1	2	0	FGD6	20975	chr12:95485483:-	UBE2E1	43396	chr3:23932000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	FGD6->FYVE,_RhoGEF_and_PH_domain_containing_6,chr12:95470525-95611258:-,UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	GPC5--DNM3OS	2	0	GPC5	10063	chr13:92797242:+	DNM3OS	15377	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MNT--CPSF7	2	0	MNT	1479	chr17:2303934:-	CPSF7	19347	chr11:61196762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	MNT->MAX_network_transcriptional_repressor,chr17:2287354-2304412:-,CPSF7->chr11:61170121-61197503:-,cleavage_and_polyadenylation_specific_factor_7	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MYL6--EEF1D	2	0	MYL6	2462	chr12:56553406:+	EEF1D	20463	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	GTEx&tcga_normals:1/3694=0.03%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	2	0	TRUE	ACH-000143
HCC2429_LUNG	RBM23--MRPL52	2	0	RBM23	6943	chr14:23378692:-	MRPL52	21923	chr14:23303381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_INVERSION:-:+:[65608],RBM23->RNA_binding_motif_protein_23,chr14:23369854-23388393:-,MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	HCC2429_LUNG	1	1	0.0121	TRUE	0	1	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	RPL31--EIF3H	2	0	RPL31	5008	chr2:101622533:+	EIF3H	27828	chr8:117658842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	RPL31->chr2:101618177-101640494:+,ribosomal_protein_L31,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	SERPINB13--DENND4C	2	0	SERPINB13	7613	chr18:61262418:+	DENND4C	19721	chr9:19288594:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	SERPINB13->chr18:61254223-61271873:+,serpin_family_B_member_13,DENND4C->DENN_domain_containing_4C,chr9:19230433-19374139:+	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	SETD5--RAD18	2	0	SETD5	1363	chr3:9439661:+	RAD18	46818	chr3:8954056:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	SETD5->SET_domain_containing_5,chr3:9439299-9520924:+,RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	SLC25A12--CBS	2	0	SLC25A12	5477	chr2:172749715:-	CBS	33173	chr21:44493451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	SLC25A12->chr2:172640880-172864766:-,solute_carrier_family_25_member_12,CBS->chr21:44473301-44497053:-,cystathionine-beta-synthase	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	SSBP2--ATG10	2	0	SSBP2	1817	chr5:81046800:-	ATG10	42422	chr5:81460218:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=5;pct=0.06%;dist=Thyroid=1,Esophagus_-_Mucosa=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,ATG10->autophagy_related_10,chr5:81267844-81572676:+	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	ZNF8--RAB10	2	0	ZNF8	1197	chr19:58790513:+	RAB10	10239	chr2:26321531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	ZNF8->chr19:58790317-58807254:+,chr19:58790318-58807254:+,zinc_finger_protein_8,RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	AC005307.3--AC005616.1	1	1	AC005307.3	5855	chr19:29212861:-	AC005616.1	22332	chr19:28983930:-	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.006	0.006	AC005307.3->chr19:28926295-29218684:-,AC005616.1->chr19:28982771-29123635:-	HCC2429_LUNG	0.4	1	0.012	TRUE	0	2	0	3	2	TRUE	ACH-000143
SF172_CENTRAL_NERVOUS_SYSTEM	NBEAL2--COMT	129	34	NBEAL2	1230	chr3:47021402:+	COMT	28264	chr22:19948722:+	ONLY_REF_SPLICE	YES	0	169	1	0.49	1.4155	0.3731	NBEAL2->chr3:47021173-47051193:+,neurobeachin_like_2,COMT->catechol-O-methyltransferase,chr22:19929130-19957498:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.49	1	1.7886	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	SMARCC1--DHX30	53	63	SMARCC1	2624	chr3:47814307:-	DHX30	53594	chr3:47882367:+	ONLY_REF_SPLICE	YES	83	182	0.58	0.39	0.5815	0.6913	LOCAL_INVERSION:-:+:[20803],SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.39	0.58	1.2728	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	UBE2R2--ACO1	48	15	UBE2R2	1368	chr9:33817932:+	ACO1	14260	chr9:32405483:+	ONLY_REF_SPLICE	YES	103	14	0.38	0.82	0.5267	0.1646	UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,ACO1->aconitase_1,chr9:32384618-32454767:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.38	0.82	0.6913	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TRUB2--RP11-1157N2__B.2	38	31	TRUB2	2144	chr9:131083878:-	RP11-1157N2__B.2	13380	chr18:14816475:-	INCL_NON_REF_SPLICE	YES	256	3	0.21	0.96	0.417	0.3402	TRUB2->TruB_pseudouridine_synthase_family_member_2,chr9:131071382-131085021:-,RP11-1157N2__B.2->chr18:14816150-14825248:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.21	0.96	0.7572	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	INPP5B--SF3A3	28	11	INPP5B	29411	chr1:38329984:-	SF3A3	48547	chr1:38425847:-	ONLY_REF_SPLICE	YES	11	448	0.78	0.08	0.3072	0.1207	LOCAL_REARRANGEMENT:-:[9918],INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B,SF3A3->chr1:38422647-38456593:-,splicing_factor_3a_subunit_3	SF172_CENTRAL_NERVOUS_SYSTEM	0.08	0.78	0.4279	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	PPP2R5E--CACFD1	21	12	PPP2R5E	2760	chr14:64006247:-	CACFD1	28563	chr9:136328605:+	ONLY_REF_SPLICE	YES	122	18	0.21	0.65	0.2304	0.1317	PPP2R5E->chr14:63838075-64010092:-,protein_phosphatase_2_regulatory_subunit_B',_epsilon,CACFD1->calcium_channel_flower_domain_containing_1,chr9:136325089-136335970:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.21	0.65	0.3621	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TRUB2--RP11-1157N2__B.2	12	33	TRUB2	2144	chr9:131083878:-	RP11-1157N2__B.2	13219	chr18:14816636:-	ONLY_REF_SPLICE	YES	256	0	0.15	1	0.1317	0.3621	TRUB2->TruB_pseudouridine_synthase_family_member_2,chr9:131071382-131085021:-,RP11-1157N2__B.2->chr18:14816150-14825248:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.4938	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TNRC18--LDLR	18	0	TNRC18	27314	chr7:5365072:-	LDLR	63573	chr19:11243399:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1975	0	GTEx_FI:{Adrenal_Gland=[count:2=pct:2.4]},TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.1975	TRUE	1	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TNRC18--LDLR	15	0	TNRC18	27328	chr7:5365058:-	LDLR	63586	chr19:11243412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1646	0	GTEx_FI:{Adrenal_Gland=[count:2=pct:2.4]},TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.1646	TRUE	1	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TXNRD2--IGLV1-62	14	2	TXNRD2	13999	chr22:19882930:-	IGLV1-62	26596	chr22:22441127:+	ONLY_REF_SPLICE	YES	188	1	0.08	0.94	0.1536	0.0219	TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2,IGLV1-62->chr22:22440972-22441521:+,immunoglobulin_lambda_variable_1-62_(pseudogene)	SF172_CENTRAL_NERVOUS_SYSTEM	0.08	0.94	0.1755	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	SMARCC1--DHX30	3	27	SMARCC1	1504	chr3:47823093:-	DHX30	53594	chr3:47882367:+	ONLY_REF_SPLICE	YES	103	182	0.23	0.14	0.0329	0.2963	LOCAL_INVERSION:-:+:[20803],SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.14	0.23	0.3292	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	CTTNBP2NL--C12orf80	3	25	CTTNBP2NL	5077	chr1:112958886:+	C12orf80	22445	chr12:52599963:-	ONLY_REF_SPLICE	YES	55	13	0.34	0.68	0.0329	0.2743	CTTNBP2NL->CTTNBP2_N-terminal_like,chr1:112938803-113006078:+,C12orf80->chr12:52599368-52604639:-,chromosome_12_open_reading_frame_80	SF172_CENTRAL_NERVOUS_SYSTEM	0.34	0.68	0.3072	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	CTTNBP2NL--C12orf80	1	28	CTTNBP2NL	5077	chr1:112958886:+	C12orf80	21981	chr12:52600427:-	ONLY_REF_SPLICE	YES	55	4	0.35	0.88	0.011	0.3072	CTTNBP2NL->CTTNBP2_N-terminal_like,chr1:112938803-113006078:+,C12orf80->chr12:52599368-52604639:-,chromosome_12_open_reading_frame_80	SF172_CENTRAL_NERVOUS_SYSTEM	0.35	0.88	0.3182	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ZNF350--DCP1A	8	0	ZNF350	1087	chr19:52490023:-	DCP1A	22905	chr3:53326857:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0878	0	ZNF350->chr19:52467596-52490109:-,zinc_finger_protein_350,DCP1A->chr3:53317447-53381654:-,decapping_mRNA_1A	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0878	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TRUB2--RP11-1157N2__B.2	4	15	TRUB2	1443	chr9:131084579:-	RP11-1157N2__B.2	13380	chr18:14816475:-	INCL_NON_REF_SPLICE	YES	154	3	0.11	0.86	0.0439	0.1646	TRUB2->TruB_pseudouridine_synthase_family_member_2,chr9:131071382-131085021:-,RP11-1157N2__B.2->chr18:14816150-14825248:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.11	0.86	0.2085	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ROCK2--AC099344.2	4	5	ROCK2	2753	chr2:11484122:-	AC099344.2	39593	chr2:11498162:-	ONLY_REF_SPLICE	YES	17	1	0.35	0.9	0.0439	0.0549	LOCAL_REARRANGEMENT:-:[9185],ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,AC099344.2->chr2:11497641-11505762:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.35	0.9	0.0988	TRUE	0	0	0	2	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	GPHN--EGLN3	4	4	GPHN	19568	chr14:67490392:+	EGLN3	57627	chr14:34400421:-	ONLY_REF_SPLICE	YES	31	1	0.21	0.89	0.0439	0.0439	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,EGLN3->chr14:34393437-34931980:-,egl-9_family_hypoxia_inducible_factor_3	SF172_CENTRAL_NERVOUS_SYSTEM	0.21	0.89	0.0878	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ZNF615--NLRP9	5	0	ZNF615	1090	chr19:52511394:-	NLRP9	19343	chr19:56235510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0549	0	ZNF615->chr19:52494585-52511483:-,zinc_finger_protein_615,NLRP9->NLR_family,_pyrin_domain_containing_9,chr19:56219798-56249768:-	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ZNF615--NLRP9	5	0	ZNF615	1090	chr19:52511394:-	NLRP9	14274	chr19:56249815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	ZNF615->chr19:52494585-52511483:-,zinc_finger_protein_615,NLRP9->NLR_family,_pyrin_domain_containing_9,chr19:56219798-56249768:-	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	SDF4--CPSF3L	4	0	SDF4	1140	chr1:1167272:-	CPSF3L	22389	chr1:1250998:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0439	0	LOCAL_REARRANGEMENT:-:[79554],SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,CPSF3L->chr1:1246965-1260071:-,cleavage_and_polyadenylation_specific_factor_3-like	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0439	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	3	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	18	0	0.18	1	0.0329	0.011	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.18	1	0.0439	TRUE	0	5	0	18	5	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	CTTNBP2NL--LINC00592	2	2	CTTNBP2NL	5077	chr1:112958886:+	LINC00592	22703	chr12:52617230:+	ONLY_REF_SPLICE	YES	55	0	0.07	1	0.0219	0.0219	CTTNBP2NL->CTTNBP2_N-terminal_like,chr1:112938803-113006078:+,LINC00592->chr12:52604714-52617588:+,long_intergenic_non-protein_coding_RNA_592	SF172_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	CTC-228N24.2--CTC-228N24.3	2	1	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	44	1	0.06	0.0219	0.011	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0329	TRUE	0	1	0	12	1	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	FOXN2--HNRNPH3	2	0	FOXN2	1178	chr2:48541953:+	HNRNPH3	17937	chr10:70096956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	FOXN2->chr2:48541776-48606433:+,forkhead_box_N2,HNRNPH3->chr10:70090931-70102948:+,heterogeneous_nuclear_ribonucleoprotein_H3	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	GPHN--EGLN3	2	0	GPHN	15291	chr14:67391009:+	EGLN3	57627	chr14:34400421:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,EGLN3->chr14:34393437-34931980:-,egl-9_family_hypoxia_inducible_factor_3	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	HIF1A--GET4	2	0	HIF1A	1327	chr14:62162557:+	GET4	27825	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	HNRNPH1--HNRNPAB	2	0	HNRNPH1	3968	chr5:179050596:-	HNRNPAB	17721	chr5:177632843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	HGNC_GENEFAM,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),HNRNPAB->chr5:177631508-177638164:+,heterogeneous_nuclear_ribonucleoprotein_A/B	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MYCBP2--FUS	2	0	MYCBP2	18252	chr13:77817194:-	FUS	103848	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	MYCBP2->MYC_binding_protein_2,_E3_ubiquitin_protein_ligase,chr13:77618792-77901185:-,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	PARPBP--HMGA2	2	0	PARPBP	1109	chr12:102514064:+	HMGA2	26561	chr12:66232299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	PARPBP->PARP1_binding_protein,chr12:102513956-102591298:+,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	PECR--XRCC5	2	0	PECR	2338	chr2:216946341:-	XRCC5	39013	chr2:217054948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	LOCAL_INVERSION:-:+:[24509],PECR->chr2:216861052-216947678:-,peroxisomal_trans-2-enoyl-CoA_reductase,XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	POT1--HSBP1L1	2	0	POT1	2169	chr7:124568869:-	HSBP1L1	32872	chr18:77730440:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	POT1->chr7:124462440-124570037:-,protection_of_telomeres_1,HSBP1L1->chr18:77724561-77730822:+,heat_shock_factor_binding_protein_1-like_1	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	RP11-463D19.2--TCEB1	2	0	RP11-463D19.2	1047	chr8:74791043:-	TCEB1	16412	chr8:74872053:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	LOCAL_REARRANGEMENT:-:[60315],RP11-463D19.2->chr8:74600926-74791089:-,TCEB1->chr8:74851404-74884522:-,transcription_elongation_factor_B_subunit_1	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	1	0	0	2	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	RPL37A--XRCC5	2	0	RPL37A	2843	chr2:217364754:+	XRCC5	32563	chr2:217024791:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GTEx&tcga_normals:1/3694=0.03%,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a,XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	2	0	1	1	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	RPL39L--EPHA6	2	0	RPL39L	4679	chr3:186845787:-	EPHA6	10489	chr3:96585669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	RPL39L->chr3:186838736-186898696:-,ribosomal_protein_L39_like,EPHA6->EPH_receptor_A6,chr3:96533425-97471304:+	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	SMEK2--ERBB2	2	0	SMEK2	6792	chr2:55831114:-	ERBB2	48952	chr17:37880979:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	SMEK2->chr2:55774428-55846015:-,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ZNF37BP--GTF2I	2	0	ZNF37BP	4387	chr10:43020988:-	GTF2I	20212	chr7:74103458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	ZNF37BP->chr10:43008958-43048270:-,zinc_finger_protein_37B,_pseudogene,GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	SOCS4--TERT	5	27	SOCS4	1467	chr14:55494414:+	TERT	13611	chr5:1294772:-	INCL_NON_REF_SPLICE	YES	88	221	0.27	0.13	0.0564	0.3043	SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.13	0.27	0.3607	TRUE	0	0	0	1	0	TRUE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	SOCS4--TERT	8	0	SOCS4	1467	chr14:55494414:+	TERT	29148	chr5:1254510:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0902	0	SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0902	TRUE	0	0	0	1	0	TRUE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	CTGF--ACTB	3	4	CTGF	1204	chr6:132272310:-	ACTB	10614	chr7:5570232:-	INCL_NON_REF_SPLICE	YES	16	3	0.3	0.7	0.0338	0.0451	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.3	0.7	0.0789	TRUE	0	0	0	9	0	TRUE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	VIM--TAGLN2	4	0	VIM	2147	chr10:17271404:+	TAGLN2	15516	chr1:159890313:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	VIM->chr10:17270258-17279592:+,vimentin,TAGLN2->chr1:159887897-159895522:-,transgelin_2	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0451	TRUE	0	0	0	2	0	TRUE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	10	0	TRUE	ACH-001142
HEC265_ENDOMETRIUM	HMGCR--ANKDD1B	426	174	HMGCR	11764	chr5:74647427:+	ANKDD1B	36202	chr5:74966804:+	ONLY_REF_SPLICE	YES	93	10	0.87	0.98	4.6033	1.8802	HMGCR->3-hydroxy-3-methylglutaryl-CoA_reductase,Oncogene{Bushman},chr5:74632154-74657929:+,ANKDD1B->ankyrin_repeat_and_death_domain_containing_1B,chr5:74907284-74967671:+	HEC265_ENDOMETRIUM	0.87	0.98	6.4835	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	HMGCR--ANKDD1B	45	195	HMGCR	11764	chr5:74647427:+	ANKDD1B	35070	chr5:74965077:+	ONLY_REF_SPLICE	YES	93	0	0.72	1	0.4863	2.1071	HMGCR->3-hydroxy-3-methylglutaryl-CoA_reductase,Oncogene{Bushman},chr5:74632154-74657929:+,ANKDD1B->ankyrin_repeat_and_death_domain_containing_1B,chr5:74907284-74967671:+	HEC265_ENDOMETRIUM	0.72	1	2.5934	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	MYEOV--SLC35A5	14	9	MYEOV	8645	chr11:69156446:+	SLC35A5	15199	chr3:112282232:+	ONLY_REF_SPLICE	YES	9	29	0.72	0.44	0.1513	0.0973	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,SLC35A5->chr3:112280556-112304424:+,solute_carrier_family_35_member_A5	HEC265_ENDOMETRIUM	0.44	0.72	0.2486	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	MYEOV--SLC35A5	6	3	MYEOV	8645	chr11:69156446:+	SLC35A5	19512	chr3:112292736:+	ONLY_REF_SPLICE	YES	9	39	0.5	0.19	0.0648	0.0324	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,SLC35A5->chr3:112280556-112304424:+,solute_carrier_family_35_member_A5	HEC265_ENDOMETRIUM	0.19	0.5	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	SLC7A5--ACTG1	5	0	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HEC265_ENDOMETRIUM	1	1	0.054	TRUE	0	0	0	11	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	MYEOV--SLC35A5	3	7	MYEOV	8645	chr11:69156446:+	SLC35A5	17181	chr3:112288018:+	ONLY_REF_SPLICE	YES	9	49	0.53	0.17	0.0324	0.0756	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,SLC35A5->chr3:112280556-112304424:+,solute_carrier_family_35_member_A5	HEC265_ENDOMETRIUM	0.17	0.53	0.108	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	AC005540.3--LDHA	3	2	AC005540.3	2138	chr2:191745648:-	LDHA	5439	chr11:18416110:+	INCL_NON_REF_SPLICE	YES	5	2	0.5	0.71	0.0324	0.0216	AC005540.3->chr2:191745523-191746785:-,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	HEC265_ENDOMETRIUM	0.5	0.71	0.054	TRUE	0	0	0	3	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	HIAT1--DCTD	2	0	HIAT1	1220	chr1:100503872:+	DCTD	19582	chr4:183836728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	HIAT1->chr1:100503653-100548933:+,DCTD->chr4:183811213-183839089:-,dCMP_deaminase	HEC265_ENDOMETRIUM	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	LMCD1--LAMC1	2	0	LMCD1	1274	chr3:8543666:+	LAMC1	16301	chr1:183072463:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LMCD1->LIM_and_cysteine_rich_domains_1,chr3:8543393-8609805:+,LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1	HEC265_ENDOMETRIUM	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	XRCC5--APLP2	2	0	XRCC5	2602	chr2:216974180:+	APLP2	35798	chr11:129979324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	HEC265_ENDOMETRIUM	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000946
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VPS53--PPM1E	3	2	VPS53	23305	chr17:505035:-	PPM1E	55914	chr17:57033010:+	ONLY_REF_SPLICE	YES	12	1	0.29	0.83	0.0264	0.0176	VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.83	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001347.6--ANKRD20A11P	3	1	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	18278	chr21:15330506:-	ONLY_REF_SPLICE	YES	10	1	0.29	0.8	0.0264	0.0088	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.8	0.0352	TRUE	0	0	0	3	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAG2--LMO2	2	2	STAG2	2224	chrX:123095285:+	LMO2	49502	chr11:33891533:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0.0176	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,LMO2->LIM_domain_only_2,Oncogene{Bushman},chr11:33880122-33913836:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001347.6--ANKRD20A11P	2	1	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	19348	chr21:15326471:-	ONLY_REF_SPLICE	YES	10	1	0.23	0.75	0.0176	0.0088	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.75	0.0264	TRUE	0	1	0	3	1	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARK4--CREBBP	2	1	MARK4	8667	chr19:45774966:+	CREBBP	29448	chr16:3843627:-	ONLY_REF_SPLICE	YES	15	37	0.17	0.07	0.0176	0.0088	MARK4->Oncogene{Bushman},chr19:45582546-45808541:+,microtubule_affinity_regulating_kinase_4,CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.17	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	2	0	FAM208B	7463	chr10:5756170:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0176	TRUE	0	0	0	11	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRK--SOBP	2	0	PTPRK	1467	chr6:128841404:-	SOBP	64790	chr6:107979411:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,SOBP->chr6:107811162-107981357:+,sine_oculis_binding_protein_homolog	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAG2--LMO2	1	4	STAG2	2645	chrX:123095706:+	LMO2	47896	chr11:33903433:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0088	0.0352	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,LMO2->LIM_domain_only_2,Oncogene{Bushman},chr11:33880122-33913836:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC15--SET	2	0	TXNDC15	1728	chr5:134210220:+	SET	18660	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	TXNDC15->chr5:134209493-134237215:+,thioredoxin_domain_containing_15,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001347.6--ANKRD20A11P	1	2	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	13921	chr21:15342431:-	ONLY_REF_SPLICE	NO	10	2	0.23	0.6	0.0088	0.0176	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.6	0.0264	TRUE	0	1	0	4	1	TRUE	ACH-000795
NCIH322_LUNG	UQCC1--PHF20	245	133	UQCC1	4118	chr20:33981895:-	PHF20	46764	chr20:34505406:+	ONLY_REF_SPLICE	YES	210	119	0.64	0.76	2.5765	1.3986	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	NCIH322_LUNG	0.64	0.76	3.9751	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	NDUFS4--GZMA	96	45	NDUFS4	1128	chr5:52856590:+	GZMA	12280	chr5:54401302:+	ONLY_REF_SPLICE	YES	116	0	0.55	1	1.0096	0.4732	NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+,GZMA->chr5:54398476-54406080:+,granzyme_A	NCIH322_LUNG	0.55	1	1.4828	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	ATP5J2--CUX1	83	2	ATP5J2	1203	chr7:99063752:-	CUX1	19487	chr7:101713619:+	ONLY_REF_SPLICE	YES	0	27	1	0.76	0.8728	0.021	ATP5J2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F2,chr7:99046098-99063954:-,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	NCIH322_LUNG	0.76	1	0.8938	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	EFHD2--FHAD1	79	13	EFHD2	1385	chr1:15736775:+	FHAD1	58071	chr1:15723793:+	ONLY_REF_SPLICE	YES	70	1	0.57	0.99	0.8308	0.1367	LOCAL_REARRANGEMENT:+:[9612],EFHD2->EF-hand_domain_family_member_D2,chr1:15736391-15756839:+,FHAD1->chr1:15573768-15726779:+,forkhead-associated_(FHA)_phosphopeptide_binding_domain_1	NCIH322_LUNG	0.57	0.99	0.9675	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	ATP5J2--CUX1	67	2	ATP5J2	1221	chr7:99063734:-	CUX1	19487	chr7:101713619:+	ONLY_REF_SPLICE	YES	0	27	1	0.72	0.7046	0.021	ATP5J2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F2,chr7:99046098-99063954:-,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	NCIH322_LUNG	0.72	1	0.7256	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	PTPRJ--C11orf54	59	23	PTPRJ	5874	chr11:48134535:+	C11orf54	40996	chr11:93488376:+	ONLY_REF_SPLICE	YES	36	14	0.69	0.85	0.6205	0.2419	PTPRJ->Oncogene{Bushman},chr11:48002113-48189670:+,protein_tyrosine_phosphatase,_receptor_type_J,C11orf54->chr11:93474757-93497915:+,chromosome_11_open_reading_frame_54	NCIH322_LUNG	0.69	0.85	0.8624	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	AMBRA1--DLG2	53	41	AMBRA1	1298	chr11:46615378:-	DLG2	76733	chr11:83195271:-	ONLY_REF_SPLICE	YES	19	0	0.83	1	0.5574	0.4312	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	NCIH322_LUNG	0.83	1	0.9886	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	EXD3--RP11-98L5.2	41	24	EXD3	2255	chr9:140289755:-	RP11-98L5.2	34963	chr9:138469196:+	ONLY_REF_SPLICE	YES	38	0	0.63	1	0.4312	0.2524	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,RP11-98L5.2->chr9:138466781-138478958:+	NCIH322_LUNG	0.63	1	0.6836	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	AFMID--SYNGR2	43	14	AFMID	2467	chr17:76187141:+	SYNGR2	16505	chr17:76166898:+	ONLY_REF_SPLICE	YES	45	410	0.56	0.12	0.4522	0.1472	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[13790],AFMID->arylformamidase,chr17:76183398-76203782:+,SYNGR2->chr17:76164639-76169608:+,synaptogyrin_2	NCIH322_LUNG	0.12	0.56	0.5994	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	NDUFS4--GZMA	36	19	NDUFS4	1128	chr5:52856590:+	GZMA	13425	chr5:54403622:+	ONLY_REF_SPLICE	YES	116	13	0.32	0.81	0.3786	0.1998	NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+,GZMA->chr5:54398476-54406080:+,granzyme_A	NCIH322_LUNG	0.32	0.81	0.5784	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	UQCC1--PHF20	5	133	UQCC1	5160	chr20:33980039:-	PHF20	46764	chr20:34505406:+	ONLY_REF_SPLICE	YES	250	119	0.36	0.54	0.0526	1.3986	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	NCIH322_LUNG	0.36	0.54	1.4512	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	SHANK3--RP5-1119A7.14	34	10	SHANK3	6898	chr22:51123079:+	RP5-1119A7.14	29036	chr22:36841654:-	ONLY_REF_SPLICE	YES	6	0	0.88	1	0.3575	0.1052	SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+,RP5-1119A7.14->chr22:36841445-36850991:-	NCIH322_LUNG	0.88	1	0.4627	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	UQCC1--PHF20	3	133	UQCC1	4118	chr20:33981895:-	PHF20	46766	chr20:34505408:+	INCL_NON_REF_SPLICE	YES	210	117	0.39	0.54	0.0315	1.3986	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	NCIH322_LUNG	0.39	0.54	1.4301	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	AMBRA1--DLG2	14	28	AMBRA1	1298	chr11:46615378:-	DLG2	79987	chr11:83183820:-	ONLY_REF_SPLICE	YES	19	9	0.69	0.82	0.1472	0.2945	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	NCIH322_LUNG	0.69	0.82	0.4417	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	SLAIN2--TMEM255B	16	10	SLAIN2	1807	chr4:48344145:+	TMEM255B	20317	chr13:114469088:+	ONLY_REF_SPLICE	YES	31	0	0.46	1	0.1683	0.1052	SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+,TMEM255B->chr13:114462216-114514926:+,transmembrane_protein_255B	NCIH322_LUNG	0.46	1	0.2735	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	AMBRA1--DLG2	16	6	AMBRA1	1194	chr11:46615482:-	DLG2	76733	chr11:83195271:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1683	0.0631	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	NCIH322_LUNG	0.96	1	0.2314	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	WWTR1--RP11-114H23.2	12	13	WWTR1	15384	chr3:149260122:-	RP11-114H23.2	28550	chr12:76088755:-	ONLY_REF_SPLICE	YES	142	0	0.15	1	0.1262	0.1367	WWTR1->WW_domain_containing_transcription_regulator_1,chr3:149235022-149454501:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH322_LUNG	0.15	1	0.2629	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	PTPRJ--C11orf54	14	4	PTPRJ	5874	chr11:48134535:+	C11orf54	42180	chr11:93490482:+	ONLY_REF_SPLICE	YES	36	37	0.33	0.33	0.1472	0.0421	PTPRJ->Oncogene{Bushman},chr11:48002113-48189670:+,protein_tyrosine_phosphatase,_receptor_type_J,C11orf54->chr11:93474757-93497915:+,chromosome_11_open_reading_frame_54	NCIH322_LUNG	0.33	0.33	0.1893	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MYH9--SHANK3	12	9	MYH9	1212	chr22:36783852:-	SHANK3	45227	chr22:51113476:+	ONLY_REF_SPLICE	YES	481	0	0.04	1	0.1262	0.0946	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+	NCIH322_LUNG	0.04	1	0.2208	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	TMEM156--LIMCH1	11	6	TMEM156	1697	chr4:39033846:-	LIMCH1	24161	chr4:41600937:+	ONLY_REF_SPLICE	YES	195	2	0.08	0.89	0.1157	0.0631	TMEM156->chr4:38968365-39034542:-,transmembrane_protein_156,LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+	NCIH322_LUNG	0.08	0.89	0.1788	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	AMBRA1--DLG2	10	5	AMBRA1	1194	chr11:46615482:-	DLG2	79987	chr11:83183820:-	INCL_NON_REF_SPLICE	YES	1	9	0.94	0.62	0.1052	0.0526	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	NCIH322_LUNG	0.62	0.94	0.1578	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	RP11-519G16.3--SNX1	9	4	RP11-519G16.3	2548	chr15:45742488:+	SNX1	22677	chr15:64415702:+	ONLY_REF_SPLICE	YES	1	77	0.93	0.14	0.0946	0.0421	RP11-519G16.3->chr15:45740625-45805965:+,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	NCIH322_LUNG	0.14	0.93	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	SLAIN2--TMEM255B	9	2	SLAIN2	1807	chr4:48344145:+	TMEM255B	31131	chr13:114514709:+	ONLY_REF_SPLICE	YES	31	9	0.26	0.55	0.0946	0.021	SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+,TMEM255B->chr13:114462216-114514926:+,transmembrane_protein_255B	NCIH322_LUNG	0.26	0.55	0.1156	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	ZSCAN25--CUX1	9	1	ZSCAN25	7701	chr7:99221803:+	CUX1	20416	chr7:101559395:+	ONLY_REF_SPLICE	YES	17	4	0.37	0.71	0.0946	0.0105	ZSCAN25->chr7:99214569-99230030:+,zinc_finger_and_SCAN_domain_containing_25,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	NCIH322_LUNG	0.37	0.71	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	ANKIB1--ASB4	8	3	ANKIB1	1286	chr7:91875833:+	ASB4	33363	chr7:95125070:+	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0841	0.0315	HGNC_GENEFAM,ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+,ASB4->ankyrin_repeat_and_SOCS_box_containing_4,chr7:95107756-95169544:+	NCIH322_LUNG	0.79	1	0.1156	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	SLAIN2--TMEM255B	7	6	SLAIN2	1807	chr4:48344145:+	TMEM255B	24140	chr13:114498121:+	ONLY_REF_SPLICE	YES	31	2	0.3	0.87	0.0736	0.0631	SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+,TMEM255B->chr13:114462216-114514926:+,transmembrane_protein_255B	NCIH322_LUNG	0.3	0.87	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	ZNF592--AUTS2	8	2	ZNF592	12424	chr15:85345718:+	AUTS2	23568	chr7:69364272:+	INCL_NON_REF_SPLICE	YES	81	1	0.11	0.91	0.0841	0.021	{Klijn_CCL:Lung=1},ZNF592->chr15:85291866-85349659:+,zinc_finger_protein_592,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	NCIH322_LUNG	0.11	0.91	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	RP11-519G16.3--SNX1	6	4	RP11-519G16.3	4713	chr15:45752767:+	SNX1	22677	chr15:64415702:+	ONLY_REF_SPLICE	YES	2	77	0.83	0.11	0.0631	0.0421	RP11-519G16.3->chr15:45740625-45805965:+,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	NCIH322_LUNG	0.11	0.83	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	VAC14--HYDIN	6	3	VAC14	1365	chr16:70834700:-	HYDIN	106888	chr16:70902691:-	ONLY_REF_SPLICE	YES	24	0	0.27	1	0.0631	0.0315	LOCAL_REARRANGEMENT:-:[6217],VAC14->Oncogene{Bushman},Vac14,_PIKFYVE_complex_component,chr16:70721342-70835064:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH322_LUNG	0.27	1	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	RP11-519G16.3--SNX1	5	1	RP11-519G16.3	1375	chr15:45740999:+	SNX1	22677	chr15:64415702:+	ONLY_REF_SPLICE	YES	0	77	1	0.07	0.0526	0.0105	RP11-519G16.3->chr15:45740625-45805965:+,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	NCIH322_LUNG	0.07	1	0.0631	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	AFMID--SYNGR2	5	0	AFMID	1117	chr17:76183514:+	SYNGR2	16505	chr17:76166898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[13790],AFMID->arylformamidase,chr17:76183398-76203782:+,SYNGR2->chr17:76164639-76169608:+,synaptogyrin_2	NCIH322_LUNG	1	1	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	TMEM156--LIMCH1	5	0	TMEM156	1281	chr4:39034262:-	LIMCH1	24161	chr4:41600937:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	TMEM156->chr4:38968365-39034542:-,transmembrane_protein_156,LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+	NCIH322_LUNG	1	1	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	SLAIN2--TMEM255B	4	3	SLAIN2	1807	chr4:48344145:+	TMEM255B	25230	chr13:114502312:+	ONLY_REF_SPLICE	YES	31	3	0.18	0.7	0.0421	0.0315	SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+,TMEM255B->chr13:114462216-114514926:+,transmembrane_protein_255B	NCIH322_LUNG	0.18	0.7	0.0736	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	NDUFS4--GZMA	3	6	NDUFS4	1128	chr5:52856590:+	GZMA	13756	chr5:54403953:+	ONLY_REF_SPLICE	YES	116	27	0.07	0.25	0.0315	0.0631	NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+,GZMA->chr5:54398476-54406080:+,granzyme_A	NCIH322_LUNG	0.07	0.25	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	AMBRA1--DLG2	1	11	AMBRA1	1298	chr11:46615378:-	DLG2	81037	chr11:83182770:-	ONLY_REF_SPLICE	YES	19	15	0.39	0.44	0.0105	0.1157	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	NCIH322_LUNG	0.39	0.44	0.1262	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	GUCY1A2--PIWIL4	3	0	GUCY1A2	9368	chr11:106647165:-	PIWIL4	33467	chr11:94301896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	GUCY1A2->Oncogene{Bushman},chr11:106544738-106889250:-,guanylate_cyclase_1,_soluble,_alpha_2,PIWIL4->chr11:94277006-94354587:+,piwi_like_RNA-mediated_gene_silencing_4	NCIH322_LUNG	1	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	PDZD8--CACUL1	3	0	PDZD8	3235	chr10:119100491:-	CACUL1	33738	chr10:120433972:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	PDZD8->PDZ_domain_containing_8,chr10:119040000-119134978:-,CACUL1->CDK2_associated_cullin_domain_1,chr10:120433679-120514761:-	NCIH322_LUNG	1	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	PTK2--SLC45A4	3	0	PTK2	15654	chr8:141874411:-	SLC45A4	66518	chr8:142264728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4	NCIH322_LUNG	1	1	0.0315	TRUE	0	1	0	1	1	TRUE	ACH-000837
NCIH322_LUNG	RP11-519G16.3--SNX1	2	2	RP11-519G16.3	2548	chr15:45742488:+	SNX1	23721	chr15:64418278:+	ONLY_REF_SPLICE	YES	1	84	0.8	0.05	0.021	0.021	RP11-519G16.3->chr15:45740625-45805965:+,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	NCIH322_LUNG	0.05	0.8	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	RP11-519G16.3--SNX1	2	2	RP11-519G16.3	4713	chr15:45752767:+	SNX1	23721	chr15:64418278:+	ONLY_REF_SPLICE	YES	2	84	0.67	0.05	0.021	0.021	RP11-519G16.3->chr15:45740625-45805965:+,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	NCIH322_LUNG	0.05	0.67	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	CUX1--PTCD1	2	0	CUX1	10206	chr7:101671425:+	PTCD1	61728	chr7:99032891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,PTCD1->chr7:99014362-99063787:-,pentatricopeptide_repeat_domain_1	NCIH322_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	REL--UNKL	2	0	REL	4714	chr2:61128218:+	UNKL	43089	chr16:1421612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	REL->Oncogene{Bushman},REL_proto-oncogene,_NF-kB_subunit,chr2:61108656-61158745:+,UNKL->chr16:1413206-1464752:-,unkempt_family_like_zinc_finger	NCIH322_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	RP11-357C3.3--ARHGEF9	2	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	27535	chrX:62898452:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	NCIH322_LUNG	1	1	0.021	TRUE	0	2	0	6	0	TRUE	ACH-000837
NCIH322_LUNG	RPL39L--PKP2	2	0	RPL39L	3615	chr3:186857001:-	PKP2	22834	chr12:32955490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	RPL39L->chr3:186838736-186898696:-,ribosomal_protein_L39_like,PKP2->chr12:32943679-33049774:-,plakophilin_2	NCIH322_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	TES--PAGE1	2	0	TES	1242	chr7:115850788:+	PAGE1	15453	chrX:49458804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,PAGE1->PAGE_family_member_1,chrX:49452053-49460596:-	NCIH322_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	ZNF592--AUTS2	2	0	ZNF592	8867	chr15:85341276:+	AUTS2	23568	chr7:69364272:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	{Klijn_CCL:Lung=1},ZNF592->chr15:85291866-85349659:+,zinc_finger_protein_592,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	NCIH322_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	AMBRA1--DLG2	1	2	AMBRA1	1298	chr11:46615378:-	DLG2	83312	chr11:83177860:-	ONLY_REF_SPLICE	NO	19	28	0.14	0.1	0.0105	0.021	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	NCIH322_LUNG	0.1	0.14	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	KDM4B--SH3GL1	1	1	KDM4B	28507	chr19:5144913:+	SH3GL1	41139	chr19:4366991:-	ONLY_REF_SPLICE	YES	11	54	0.15	0.04	0.0105	0.0105	KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,SH3GL1->Oncogene{Bushman},SH3_domain_containing_GRB2_like_1,chr19:4360367-4400544:-	NCIH322_LUNG	0.04	0.15	0.021	TRUE	1	0	0	1	0	TRUE	ACH-000837
SNU1041_UPPER_AERODIGESTIVE_TRACT	VCL--ZSWIM8	231	157	VCL	1262	chr10:75758133:+	ZSWIM8	37448	chr10:75553905:+	ONLY_REF_SPLICE	YES	267	51	0.59	0.88	2.2399	1.5223	VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ZSWIM8->chr10:75545340-75561551:+,zinc_finger_SWIM-type_containing_8	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.59	0.88	3.7622	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TMEM230--SDC4	213	110	TMEM230	5015	chr20:5086834:-	SDC4	11208	chr20:43964560:-	ONLY_REF_SPLICE	YES	331	65	0.49	0.83	2.0653	1.0666	TMEM230->chr20:5080486-5093749:-,transmembrane_protein_230,SDC4->Oncogene{Bushman},chr20:43953928-43977064:-,syndecan_4	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.49	0.83	3.1319	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	KLHL2--SLC7A11	31	7	KLHL2	10117	chr4:166184515:+	SLC7A11	25832	chr4:139163211:-	INCL_NON_REF_SPLICE	YES	77	63	0.33	0.38	0.3006	0.0679	KLHL2->chr4:166128770-166244308:+,kelch_like_family_member_2,SLC7A11->chr4:139085251-139163503:-,solute_carrier_family_7_member_11	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.33	0.38	0.3685	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TMEM230--SDC4	12	49	TMEM230	3718	chr20:5089978:-	SDC4	11208	chr20:43964560:-	ONLY_REF_SPLICE	YES	415	65	0.13	0.48	0.1164	0.4751	TMEM230->chr20:5080486-5093749:-,transmembrane_protein_230,SDC4->Oncogene{Bushman},chr20:43953928-43977064:-,syndecan_4	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.13	0.48	0.5915	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RAPGEF2--NAF1	20	7	RAPGEF2	1054	chr4:160025383:+	NAF1	46554	chr4:164085543:-	ONLY_REF_SPLICE	YES	2	17	0.93	0.61	0.1939	0.0679	RAPGEF2->Rap_guanine_nucleotide_exchange_factor_2,chr4:160025330-160281321:+,NAF1->chr4:164031225-164088073:-,nuclear_assembly_factor_1_ribonucleoprotein	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.61	0.93	0.2618	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TSPAN2--NGF	17	6	TSPAN2	2240	chr1:115615526:-	NGF	15521	chr1:115836371:-	ONLY_REF_SPLICE	YES	10	0	0.7	1	0.1648	0.0582	TSPAN2->chr1:115590632-115632121:-,tetraspanin_2,NGF->chr1:115828539-115880857:-,nerve_growth_factor	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.7	1	0.223	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MET--AC139100.2	7	4	MET	25353	chr7:116436464:+	AC139100.2	37683	chr18:77933763:+	INCL_NON_REF_SPLICE	YES	96	0	0.1	1	0.0679	0.0388	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,AC139100.2->chr18:77905807-77936315:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.1	1	0.1067	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	KLHL2--SLC7A11	6	7	KLHL2	10113	chr4:166184511:+	SLC7A11	25832	chr4:139163211:-	INCL_NON_REF_SPLICE	YES	67	63	0.16	0.17	0.0582	0.0679	KLHL2->chr4:166128770-166244308:+,kelch_like_family_member_2,SLC7A11->chr4:139085251-139163503:-,solute_carrier_family_7_member_11	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.16	0.17	0.1261	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MET--AC139100.2	7	3	MET	24985	chr7:116436096:+	AC139100.2	37659	chr18:77933739:+	INCL_NON_REF_SPLICE	YES	167	0	0.06	1	0.0679	0.0291	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,AC139100.2->chr18:77905807-77936315:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.06	1	0.097	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RAPGEF2--NAF1	5	2	RAPGEF2	1054	chr4:160025383:+	NAF1	50093	chr4:164069586:-	ONLY_REF_SPLICE	YES	2	22	0.78	0.24	0.0485	0.0194	RAPGEF2->Rap_guanine_nucleotide_exchange_factor_2,chr4:160025330-160281321:+,NAF1->chr4:164031225-164088073:-,nuclear_assembly_factor_1_ribonucleoprotein	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.24	0.78	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	IGFBP7--KRT17	4	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	TRUE	0	0	0	9	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	IGFBP7--KRT17	3	1	IGFBP7	1160	chr4:57976392:-	KRT17	10557	chr17:39780813:-	INCL_NON_REF_SPLICE	NO	0	5	1	0.44	0.0291	0.0097	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.44	1	0.0388	TRUE	0	0	0	9	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	AAMP--ARPC2	2	0	AAMP	1876	chr2:219134105:-	ARPC2	22279	chr2:219114087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	{Klijn_CCL:Ovary=1},LOCAL_INVERSION:-:+:[9771],AAMP->angio_associated_migratory_cell_protein,chr2:219128850-219134980:-,ARPC2->actin_related_protein_2/3_complex_subunit_2,chr2:219081817-219119079:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	ATF2--RPL30	2	0	ATF2	1333	chr2:176032778:-	RPL30	25840	chr8:99057627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	ATXN10--DCUN1D5	2	0	ATXN10	8664	chr22:46114373:+	DCUN1D5	30402	chr11:102937296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	ATXN10->ataxin_10,chr22:46067678-46241187:+,DCUN1D5->chr11:102932805-102962944:-,defective_in_cullin_neddylation_1_domain_containing_5	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	C7orf50--SUN1	2	0	C7orf50	3078	chr7:1166893:-	SUN1	21146	chr7:872142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	0	1	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	CARKD--ANKRD10	2	0	CARKD	1114	chr13:111267994:+	ANKRD10	17019	chr13:111563117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	CARKD->chr13:111267881-111292340:+,ANKRD10->ankyrin_repeat_domain_10,chr13:111530887-111567416:-	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TMEM123--BIRC2	2	0	TMEM123	5695	chr11:102319543:-	BIRC2	22451	chr11:102248227:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	1	3	0	8	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TSPAN2--NGF	1	2	TSPAN2	2240	chr1:115615526:-	NGF	16645	chr1:115829428:-	ONLY_REF_SPLICE	YES	10	22	0.23	0.12	0.0097	0.0194	TSPAN2->chr1:115590632-115632121:-,tetraspanin_2,NGF->chr1:115828539-115880857:-,nerve_growth_factor	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.12	0.23	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000618
HT1197_URINARY_TRACT	NPEPPS--C8orf46	438	349	NPEPPS	2614	chr17:45608921:+	C8orf46	46602	chr8:67417610:+	ONLY_REF_SPLICE	YES	618	1	0.56	1	4.9955	3.9804	NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+,C8orf46->chr8:67372238-67430759:+,chromosome_8_open_reading_frame_46	HT1197_URINARY_TRACT	0.56	1	8.9759	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	NR2C1--FGD6	46	37	NR2C1	1324	chr12:95467156:-	FGD6	36559	chr12:95507477:-	ONLY_REF_SPLICE	YES	71	79	0.54	0.51	0.5246	0.422	LOCAL_REARRANGEMENT:-:[3046],NR2C1->chr12:95414005-95467479:-,nuclear_receptor_subfamily_2_group_C_member_1,FGD6->FYVE,_RhoGEF_and_PH_domain_containing_6,chr12:95470525-95611258:-	HT1197_URINARY_TRACT	0.51	0.54	0.9466	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	NPEPPS--C8orf46	1	101	NPEPPS	2614	chr17:45608921:+	C8orf46	47756	chr8:67422331:+	ONLY_REF_SPLICE	YES	618	81	0.14	0.56	0.0114	1.1519	NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+,C8orf46->chr8:67372238-67430759:+,chromosome_8_open_reading_frame_46	HT1197_URINARY_TRACT	0.14	0.56	1.1633	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	PRKAR2A--SLC25A20	24	8	PRKAR2A	1512	chr3:48884768:-	SLC25A20	28062	chr3:48896064:-	ONLY_REF_SPLICE	YES	13	17	0.71	0.65	0.2737	0.0912	LOCAL_REARRANGEMENT:-:[9090],PRKAR2A->chr3:48782030-48885279:-,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_alpha,SLC25A20->chr3:48894369-48936426:-,solute_carrier_family_25_member_20	HT1197_URINARY_TRACT	0.65	0.71	0.3649	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	CDK11A--NADK	22	12	CDK11A	3732	chr1:1653035:-	NADK	20724	chr1:1696885:-	ONLY_REF_SPLICE	YES	200	49	0.15	0.41	0.2509	0.1369	LOCAL_REARRANGEMENT:-:[26905],CDK11A->Oncogene{Bushman},chr1:1634169-1655766:-,cyclin-dependent_kinase_11A,NADK->NAD_kinase,chr1:1682671-1711896:-	HT1197_URINARY_TRACT	0.15	0.41	0.3878	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	CTA-211A9.5--RBX1	22	12	CTA-211A9.5	2377	chr22:27089799:+	RBX1	25786	chr22:41368480:+	ONLY_REF_SPLICE	YES	11	124	0.76	0.22	0.2509	0.1369	CTA-211A9.5->chr22:27068730-27176170:+,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	HT1197_URINARY_TRACT	0.22	0.76	0.3878	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	DLC1--PIWIL2	20	15	DLC1	10024	chr8:13133771:-	PIWIL2	55256	chr8:22210472:+	ONLY_REF_SPLICE	YES	15	2	0.7	0.95	0.2281	0.1711	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,PIWIL2->chr8:22132810-22215076:+,piwi_like_RNA-mediated_gene_silencing_2	HT1197_URINARY_TRACT	0.7	0.95	0.3992	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	PIP4K2B--FBXO47	19	12	PIP4K2B	1861	chr17:36955519:-	FBXO47	26341	chr17:37101389:-	ONLY_REF_SPLICE	YES	52	0	0.37	1	0.2167	0.1369	PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,FBXO47->F-box_protein_47,chr17:37092685-37123655:-	HT1197_URINARY_TRACT	0.37	1	0.3536	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	YTHDF2--RP11-295P22.2	14	9	YTHDF2	7260	chr1:29070498:+	RP11-295P22.2	12286	chrY:13629735:-	INCL_NON_REF_SPLICE	YES	150	0	0.13	1	0.1597	0.1026	YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+,RP11-295P22.2->chrY:13629403-13629913:-	HT1197_URINARY_TRACT	0.13	1	0.2623	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	CTA-211A9.5--RBX1	12	15	CTA-211A9.5	3556	chr22:27107971:+	RBX1	25786	chr22:41368480:+	ONLY_REF_SPLICE	YES	5	124	0.84	0.18	0.1369	0.1711	CTA-211A9.5->chr22:27068730-27176170:+,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	HT1197_URINARY_TRACT	0.18	0.84	0.308	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	FAM222B--B4GALT4	8	17	FAM222B	8446	chr17:27093604:-	B4GALT4	19596	chr3:118955917:-	ONLY_REF_SPLICE	YES	11	41	0.69	0.38	0.0912	0.1939	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,B4GALT4->beta-1,4-galactosyltransferase_4,chr3:118930579-118959950:-	HT1197_URINARY_TRACT	0.38	0.69	0.2851	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	DLC1--PIWIL2	10	0	DLC1	9591	chr8:13134204:-	PIWIL2	55256	chr8:22210472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1141	0	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,PIWIL2->chr8:22132810-22215076:+,piwi_like_RNA-mediated_gene_silencing_2	HT1197_URINARY_TRACT	1	1	0.1141	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	PBX1--COPA	9	2	PBX1	4894	chr1:164532548:+	COPA	52147	chr1:160310084:-	ONLY_REF_SPLICE	YES	6	249	0.65	0.04	0.1026	0.0228	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha	HT1197_URINARY_TRACT	0.04	0.65	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	PLCG1--TOP1	8	0	PLCG1	1076	chr20:39765675:+	TOP1	35196	chr20:39729849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0912	0	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	HT1197_URINARY_TRACT	1	1	0.0912	TRUE	0	0	0	3	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	XXbac-BPG252P9.9--IFI27	6	6	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	2156	3	0.01	0.8	0.0684	0.0684	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	HT1197_URINARY_TRACT	0.01	0.8	0.1368	TRUE	0	2	0	13	2	TRUE	ACH-000547
HT1197_URINARY_TRACT	DLC1--PIWIL2	3	15	DLC1	10024	chr8:13133771:-	PIWIL2	53990	chr8:22175683:+	ONLY_REF_SPLICE	YES	15	0	0.55	1	0.0342	0.1711	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,PIWIL2->chr8:22132810-22215076:+,piwi_like_RNA-mediated_gene_silencing_2	HT1197_URINARY_TRACT	0.55	1	0.2053	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	PCNX--RAD51B	5	6	PCNX	7996	chr14:71435827:+	RAD51B	73817	chr14:68758601:+	ONLY_REF_SPLICE	YES	57	9	0.16	0.55	0.057	0.0684	PCNX->chr14:71374122-71582099:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	HT1197_URINARY_TRACT	0.16	0.55	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	NBAS--AC113608.1	5	5	NBAS	9359	chr2:15674667:-	AC113608.1	64055	chr2:15942214:-	ONLY_REF_SPLICE	YES	27	0	0.27	1	0.057	0.057	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC113608.1->chr2:15941871-15951001:-	HT1197_URINARY_TRACT	0.27	1	0.114	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	CDC42EP2--BSCL2	6	0	CDC42EP2	1137	chr11:65082425:+	BSCL2	10974	chr11:62474796:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0	CDC42EP2->CDC42_effector_protein_2,chr11:65082289-65089900:+,BSCL2->Berardinelli-Seip_congenital_lipodystrophy_2_(seipin),chr11:62457747-62477317:-	HT1197_URINARY_TRACT	1	1	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	PROSER2-AS1--UPF2	5	3	PROSER2-AS1	3754	chr10:11916667:-	UPF2	19466	chr10:12046726:-	ONLY_REF_SPLICE	YES	0	51	1	0.14	0.057	0.0342	LOCAL_REARRANGEMENT:-:[25322],PROSER2-AS1->PROSER2_antisense_RNA_1,chr10:11891612-11936699:-,UPF2->UPF2_regulator_of_nonsense_transcripts_homolog_(yeast),chr10:11962021-12085169:-	HT1197_URINARY_TRACT	0.14	1	0.0912	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	DLC1--SLC39A14	5	2	DLC1	10024	chr8:13133771:-	SLC39A14	40179	chr8:22262209:+	ONLY_REF_SPLICE	YES	15	92	0.32	0.07	0.057	0.0228	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,SLC39A14->chr8:22224762-22291642:+,solute_carrier_family_39_member_14	HT1197_URINARY_TRACT	0.07	0.32	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	ZC3H3--MROH6	3	7	ZC3H3	4593	chr8:144618427:-	MROH6	19460	chr8:144653164:-	ONLY_REF_SPLICE	YES	26	1	0.28	0.91	0.0342	0.0798	LOCAL_REARRANGEMENT:-:[24734],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,MROH6->chr8:144648357-144655141:-,maestro_heat_like_repeat_family_member_6	HT1197_URINARY_TRACT	0.28	0.91	0.114	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	DLC1--PIWIL2	3	3	DLC1	10024	chr8:13133771:-	PIWIL2	57588	chr8:22212862:+	ONLY_REF_SPLICE	YES	15	27	0.29	0.18	0.0342	0.0342	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,PIWIL2->chr8:22132810-22215076:+,piwi_like_RNA-mediated_gene_silencing_2	HT1197_URINARY_TRACT	0.18	0.29	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	FDFT1--MTATP6P1	3	0	FDFT1	3060	chr8:11660368:+	MTATP6P1	17106	chr1:569393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HT1197_URINARY_TRACT	1	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	CTA-211A9.5--RBX1	1	5	CTA-211A9.5	1221	chr22:27068950:+	RBX1	25786	chr22:41368480:+	ONLY_REF_SPLICE	YES	14	124	0.3	0.05	0.0114	0.057	CTA-211A9.5->chr22:27068730-27176170:+,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	HT1197_URINARY_TRACT	0.05	0.3	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	CTD-2410N18.5--AP3B1	2	0	CTD-2410N18.5	1312	chr5:133561451:-	AP3B1	28878	chr5:77396849:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CTD-2410N18.5->chr5:133502861-133561762:-,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	DNMT1--PPP1R12C	2	0	DNMT1	18956	chr19:10270334:-	PPP1R12C	48570	chr19:55614936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	FIBCD1--WWC1	2	0	FIBCD1	8846	chr9:133780621:-	WWC1	18562	chr5:167812216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	FIBCD1->chr9:133777825-133814673:-,fibrinogen_C_domain_containing_1,WWC1->WW_and_C2_domain_containing_1,chr5:167718656-167899308:+	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	FNDC3B--ALS2CR12	2	0	FNDC3B	39126	chr3:172098883:+	ALS2CR12	57275	chr2:202173973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,ALS2CR12->amyotrophic_lateral_sclerosis_2_chromosome_region_candidate_12,chr2:202152994-202222121:-	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	GAS5--NOP56	2	0	GAS5	4026	chr1:173834995:-	NOP56	13613	chr20:2637420:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding),NOP56->NOP56_ribonucleoprotein,chr20:2632791-2639039:+	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	LRRFIP1--AGAP1	2	0	LRRFIP1	25426	chr2:238668848:+	AGAP1	64329	chr2:236945205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	PCF11--CHMP1A	2	0	PCF11	1644	chr11:82868673:+	CHMP1A	28491	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PCF11->PCF11_cleavage_and_polyadenylation_factor_subunit,chr11:82868030-82898493:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	SRP54--C7orf26	2	0	SRP54	15557	chr14:35488280:+	C7orf26	26754	chr7:6639460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa,C7orf26->chr7:6629648-6648357:+,chromosome_7_open_reading_frame_26	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	ANKS1A--RP11-444E17.6	1	2	ANKS1A	11307	chr6:34985836:+	RP11-444E17.6	33095	chr6:44320463:+	ONLY_REF_SPLICE	YES	39	0	0.07	1	0.0114	0.0228	ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,RP11-444E17.6->chr6:44240931-44346694:+	HT1197_URINARY_TRACT	0.07	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	ABCA4--ARHGAP29	1	1	ABCA4	42775	chr1:94480099:-	ARHGAP29	88613	chr1:94616071:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0114	0.0114	LOCAL_REARRANGEMENT:-:[27856],ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	HT1197_URINARY_TRACT	0.2	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	ACKR2--HIGD1A	1	1	ACKR2	3259	chr3:42851024:+	HIGD1A	22363	chr3:42835767:-	ONLY_REF_SPLICE	YES	1	7	0.67	0.22	0.0114	0.0114	LOCAL_INVERSION:+:-:[221],ACKR2->atypical_chemokine_receptor_2,chr3:42846244-42929466:+,HIGD1A->HIG1_hypoxia_inducible_domain_family_member_1A,chr3:42798669-42846023:-	HT1197_URINARY_TRACT	0.22	0.67	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
KMRC3_KIDNEY	GEMIN7--RELB	9	8	GEMIN7	1835	chr19:45583287:+	RELB	14588	chr19:45525311:+	ONLY_REF_SPLICE	YES	34	11	0.33	0.61	0.1263	0.1123	LOCAL_REARRANGEMENT:+:[41001],GEMIN7->chr19:45582453-45594782:+,gem_nuclear_organelle_associated_protein_7,RELB->Oncogene{Bushman},RELB_proto-oncogene,_NF-kB_subunit,chr19:45504688-45541452:+	KMRC3_KIDNEY	0.33	0.61	0.2386	TRUE	0	0	0	1	0	TRUE	ACH-000313
KMRC3_KIDNEY	TPM1--OBSCN	2	0	TPM1	2200	chr15:63336030:+	OBSCN	23921	chr1:228401142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	GTEx&tcga_normals:1/3694=0.03%,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha),OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	KMRC3_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000313
KYSE140_OESOPHAGUS	WDR43--TRIM54	149	189	WDR43	1281	chr2:29117789:+	TRIM54	29769	chr2:27527827:+	ONLY_REF_SPLICE	YES	83	5	0.8	0.99	2.0246	2.5681	{Klijn_CCL:Head-Neck=1},WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+,TRIM54->chr2:27505260-27530307:+,tripartite_motif_containing_54	KYSE140_OESOPHAGUS	0.8	0.99	4.5927	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MIER3--CDC20B	145	53	MIER3	13291	chr5:56226491:-	CDC20B	30752	chr5:54429356:-	ONLY_REF_SPLICE	YES	7	0	0.97	1	1.9702	0.7202	{Klijn_CCL:Head-Neck=1},MIER3->MIER_family_member_3,chr5:56215429-56267502:-,CDC20B->cell_division_cycle_20B,chr5:54408799-54469005:-	KYSE140_OESOPHAGUS	0.97	1	2.6904	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	WDR43--TRIM54	112	129	WDR43	1281	chr2:29117789:+	TRIM54	30394	chr2:27528452:+	ONLY_REF_SPLICE	YES	83	21	0.74	0.92	1.5218	1.7528	{Klijn_CCL:Head-Neck=1},WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+,TRIM54->chr2:27505260-27530307:+,tripartite_motif_containing_54	KYSE140_OESOPHAGUS	0.74	0.92	3.2746	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	AC069277.2--AC026167.1	69	38	AC069277.2	1468	chr3:6532633:+	AC026167.1	18180	chr3:6400588:+	ONLY_REF_SPLICE	YES	6	0	0.95	1	0.9376	0.5163	AC069277.2->chr3:6532166-6777816:+,AC026167.1->chr3:6190171-6407572:+	KYSE140_OESOPHAGUS	0.95	1	1.4539	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	BOD1--RP11-1145L24.1	71	17	BOD1	3736	chr5:173040134:-	RP11-1145L24.1	9993	chr8:73793946:-	INCL_NON_REF_SPLICE	YES	67	0	0.57	1	0.9647	0.231	BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,RP11-1145L24.1->chr8:73787094-73793975:-	KYSE140_OESOPHAGUS	0.57	1	1.1957	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	TESK2--PRDX1	35	16	TESK2	1349	chr1:45956524:-	PRDX1	18885	chr1:45984726:-	ONLY_REF_SPLICE	YES	6	47	0.89	0.52	0.4756	0.2174	LOCAL_REARRANGEMENT:-:[19836],TESK2->chr1:45809555-45956872:-,testis-specific_kinase_2,PRDX1->Oncogene{Bushman},chr1:45976708-45988719:-,peroxiredoxin_1	KYSE140_OESOPHAGUS	0.52	0.89	0.693	TRUE	0	1	0	1	1	TRUE	ACH-000823
KYSE140_OESOPHAGUS	AC069277.2--AC026167.1	28	37	AC069277.2	1464	chr3:6532629:+	AC026167.1	18180	chr3:6400588:+	ONLY_REF_SPLICE	YES	5	0	0.93	1	0.3805	0.5028	AC069277.2->chr3:6532166-6777816:+,AC026167.1->chr3:6190171-6407572:+	KYSE140_OESOPHAGUS	0.93	1	0.8833	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	RP11-1145L24.1--CTB-33O18.1	35	4	RP11-1145L24.1	1246	chr8:73793730:-	CTB-33O18.1	7659	chr5:172999884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4756	0.0544	RP11-1145L24.1->chr8:73787094-73793975:-,CTB-33O18.1->chr5:172989481-173000202:+	KYSE140_OESOPHAGUS	1	1	0.53	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	AC069277.2--AC026167.1	31	6	AC069277.2	1194	chr3:6532359:+	AC026167.1	18180	chr3:6400588:+	ONLY_REF_SPLICE	YES	2	0	0.95	1	0.4212	0.0815	AC069277.2->chr3:6532166-6777816:+,AC026167.1->chr3:6190171-6407572:+	KYSE140_OESOPHAGUS	0.95	1	0.5027	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	HCG18--ERP29	18	47	HCG18	3356	chr6:30282046:-	ERP29	23057	chr12:112451258:+	INCL_NON_REF_SPLICE	YES	20	0	0.76	1	0.2446	0.6386	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29	KYSE140_OESOPHAGUS	0.76	1	0.8832	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	HCG18--ERP29	22	28	HCG18	2142	chr6:30293786:-	ERP29	23057	chr12:112451258:+	INCL_NON_REF_SPLICE	YES	18	0	0.74	1	0.2989	0.3805	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29	KYSE140_OESOPHAGUS	0.74	1	0.6794	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	PVT1--KB-1410C5.2	21	12	PVT1	1202	chr8:128806980:+	KB-1410C5.2	28973	chr8:102274610:-	ONLY_REF_SPLICE	YES	32	0	0.51	1	0.2853	0.1631	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,KB-1410C5.2->chr8:102273769-102275131:-	KYSE140_OESOPHAGUS	0.51	1	0.4484	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	HCG18--ERP29	16	10	HCG18	1797	chr6:30294131:-	ERP29	23057	chr12:112451258:+	INCL_NON_REF_SPLICE	YES	15	0	0.63	1	0.2174	0.1359	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29	KYSE140_OESOPHAGUS	0.63	1	0.3533	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	BOD1--RP11-1145L24.1	13	18	BOD1	3736	chr5:173040134:-	RP11-1145L24.1	9989	chr8:73793950:-	INCL_NON_REF_SPLICE	YES	67	0	0.32	1	0.1766	0.2446	BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,RP11-1145L24.1->chr8:73787094-73793975:-	KYSE140_OESOPHAGUS	0.32	1	0.4212	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MB21D2--ATP13A4	16	6	MB21D2	1532	chr3:192635419:-	ATP13A4	42653	chr3:193125182:-	ONLY_REF_SPLICE	YES	21	0	0.51	1	0.2174	0.0815	MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,ATP13A4->ATPase_13A4,chr3:193119866-193310900:-	KYSE140_OESOPHAGUS	0.51	1	0.2989	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	CERK--RP11-513G11.4	12	1	CERK	4535	chr22:47115983:-	RP11-513G11.4	23961	chr3:193922755:-	ONLY_REF_SPLICE	YES	57	0	0.19	1	0.1631	0.0136	CERK->ceramide_kinase,chr22:47080308-47134158:-,RP11-513G11.4->chr3:193920805-193967942:-	KYSE140_OESOPHAGUS	0.19	1	0.1767	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	HCG18--ERP29	4	19	HCG18	2000	chr6:30293928:-	ERP29	23057	chr12:112451258:+	INCL_NON_REF_SPLICE	YES	20	0	0.53	1	0.0544	0.2582	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29	KYSE140_OESOPHAGUS	0.53	1	0.3126	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MKL1--CLDN1	7	7	MKL1	1225	chr22:41032482:-	CLDN1	24936	chr3:190030825:-	ONLY_REF_SPLICE	YES	38	4	0.27	0.78	0.0951	0.0951	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,CLDN1->chr3:190023490-190040264:-,claudin_1	KYSE140_OESOPHAGUS	0.27	0.78	0.1902	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	PUS7L--DAPK1	8	2	PUS7L	5811	chr12:44139849:-	DAPK1	19549	chr9:90121735:+	ONLY_REF_SPLICE	YES	18	48	0.36	0.17	0.1087	0.0272	PUS7L->chr12:44122410-44152620:-,pseudouridylate_synthase_7_like,DAPK1->Oncogene{Bushman},chr9:90112143-90323548:+,death_associated_protein_kinase_1	KYSE140_OESOPHAGUS	0.17	0.36	0.1359	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	XPNPEP3--EP300	7	4	XPNPEP3	6403	chr22:41266143:+	EP300	56776	chr22:41562603:+	ONLY_REF_SPLICE	YES	32	70	0.26	0.14	0.0951	0.0544	XPNPEP3->X-prolyl_aminopeptidase_3,_mitochondrial,chr22:41253081-41363838:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	KYSE140_OESOPHAGUS	0.14	0.26	0.1495	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MIER3--CDC20B	1	27	MIER3	13291	chr5:56226491:-	CDC20B	31869	chr5:54424445:-	ONLY_REF_SPLICE	NO	7	24	0.8	0.54	0.0136	0.3669	{Klijn_CCL:Head-Neck=1},MIER3->MIER_family_member_3,chr5:56215429-56267502:-,CDC20B->cell_division_cycle_20B,chr5:54408799-54469005:-	KYSE140_OESOPHAGUS	0.54	0.8	0.3805	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	AC069277.2--AC026167.1	2	22	AC069277.2	1464	chr3:6532629:+	AC026167.1	19227	chr3:6407416:+	ONLY_REF_SPLICE	YES	5	1	0.83	0.96	0.0272	0.2989	AC069277.2->chr3:6532166-6777816:+,AC026167.1->chr3:6190171-6407572:+	KYSE140_OESOPHAGUS	0.83	0.96	0.3261	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	AC108142.1--RP11-665C14.2	7	2	AC108142.1	7418	chr4:183002909:-	RP11-665C14.2	19713	chr4:182182721:-	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0951	0.0272	AC108142.1->chr4:182795591-183066402:-,RP11-665C14.2->chr4:182182314-182186182:-	KYSE140_OESOPHAGUS	0.75	1	0.1223	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	FSTL4--CPQ	7	2	FSTL4	3474	chr5:132919235:-	CPQ	45683	chr8:98155248:+	INCL_NON_REF_SPLICE	YES	11	0	0.45	1	0.0951	0.0272	FSTL4->chr5:132532147-132948255:-,follistatin_like_4,CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+	KYSE140_OESOPHAGUS	0.45	1	0.1223	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	BOD1--RP11-1145L24.1	3	17	BOD1	3740	chr5:173040130:-	RP11-1145L24.1	9993	chr8:73793946:-	INCL_NON_REF_SPLICE	YES	67	0	0.23	1	0.0408	0.231	BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,RP11-1145L24.1->chr8:73787094-73793975:-	KYSE140_OESOPHAGUS	0.23	1	0.2718	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	PHF21B--ATP13A4-AS1	5	6	PHF21B	2455	chr22:45404426:-	ATP13A4-AS1	27493	chr3:193272559:+	ONLY_REF_SPLICE	YES	4	0	0.73	1	0.0679	0.0815	PHF21B->PHD_finger_protein_21B,chr22:45277042-45405880:-,ATP13A4-AS1->ATP13A4_antisense_RNA_1,chr3:193271002-193272877:+	KYSE140_OESOPHAGUS	0.73	1	0.1494	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	RALGAPA1--G2E3	6	2	RALGAPA1	41684	chr14:36121011:-	G2E3	66428	chr14:31050282:+	ONLY_REF_SPLICE	YES	36	48	0.18	0.14	0.0815	0.0272	RALGAPA1->Ral_GTPase_activating_protein_catalytic_alpha_subunit_1,chr14:36007558-36278510:-,G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+	KYSE140_OESOPHAGUS	0.14	0.18	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	TNRC6B--ARHGAP8	4	9	TNRC6B	1182	chr22:40441002:+	ARHGAP8	49703	chr22:45121124:+	ONLY_REF_SPLICE	YES	5	16	0.72	0.45	0.0544	0.1223	TNRC6B->chr22:40440821-40731812:+,trinucleotide_repeat_containing_6B,ARHGAP8->Rho_GTPase_activating_protein_8,chr22:45098355-45258665:+	KYSE140_OESOPHAGUS	0.45	0.72	0.1767	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	DOCK1--PPP1R13B	6	0	DOCK1	57420	chr10:129249877:+	PPP1R13B	64170	chr14:104263855:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,PPP1R13B->chr14:104200089-104313927:-,protein_phosphatase_1_regulatory_subunit_13B	KYSE140_OESOPHAGUS	1	1	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	BOD1--CTB-33O18.1	2	15	BOD1	3736	chr5:173040134:-	CTB-33O18.1	12031	chr5:172999884:+	ONLY_REF_SPLICE	YES	67	0	0.2	1	0.0272	0.2038	LOCAL_INVERSION:-:+:[34315],BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,CTB-33O18.1->chr5:172989481-173000202:+	KYSE140_OESOPHAGUS	0.2	1	0.231	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MB21D2--ATP13A4	4	7	MB21D2	1532	chr3:192635419:-	ATP13A4	41564	chr3:193128859:-	ONLY_REF_SPLICE	YES	21	0	0.34	1	0.0544	0.0951	MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,ATP13A4->ATPase_13A4,chr3:193119866-193310900:-	KYSE140_OESOPHAGUS	0.34	1	0.1495	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	PHF21B--ATP13A4-AS1	4	6	PHF21B	8156	chr22:45362895:-	ATP13A4-AS1	27493	chr3:193272559:+	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0544	0.0815	PHF21B->PHD_finger_protein_21B,chr22:45277042-45405880:-,ATP13A4-AS1->ATP13A4_antisense_RNA_1,chr3:193271002-193272877:+	KYSE140_OESOPHAGUS	0.67	1	0.1359	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	PVT1--KB-1410C5.2	1	13	PVT1	2520	chr8:128808317:+	KB-1410C5.2	28973	chr8:102274610:-	ONLY_REF_SPLICE	YES	32	0	0.3	1	0.0136	0.1766	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,KB-1410C5.2->chr8:102273769-102275131:-	KYSE140_OESOPHAGUS	0.3	1	0.1902	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	TNRC6B--ARHGAP8	4	1	TNRC6B	1182	chr22:40441002:+	ARHGAP8	59235	chr22:45182337:+	ONLY_REF_SPLICE	YES	5	5	0.5	0.5	0.0544	0.0136	TNRC6B->chr22:40440821-40731812:+,trinucleotide_repeat_containing_6B,ARHGAP8->Rho_GTPase_activating_protein_8,chr22:45098355-45258665:+	KYSE140_OESOPHAGUS	0.5	0.5	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	ZC3H7B--EFCAB6	4	1	ZC3H7B	6962	chr22:41728231:+	EFCAB6	34081	chr22:44178205:-	ONLY_REF_SPLICE	YES	66	3	0.07	0.62	0.0544	0.0136	ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,EFCAB6->EF-hand_calcium_binding_domain_6,chr22:43924624-44208217:-	KYSE140_OESOPHAGUS	0.07	0.62	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	XPNPEP3--EP300	3	4	XPNPEP3	5379	chr22:41265119:+	EP300	56776	chr22:41562603:+	ONLY_REF_SPLICE	YES	27	70	0.21	0.09	0.0408	0.0544	XPNPEP3->X-prolyl_aminopeptidase_3,_mitochondrial,chr22:41253081-41363838:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	KYSE140_OESOPHAGUS	0.09	0.21	0.0952	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	PHF21B--ATP13A4-AS1	2	6	PHF21B	6999	chr22:45364875:-	ATP13A4-AS1	27493	chr3:193272559:+	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.0272	0.0815	PHF21B->PHD_finger_protein_21B,chr22:45277042-45405880:-,ATP13A4-AS1->ATP13A4_antisense_RNA_1,chr3:193271002-193272877:+	KYSE140_OESOPHAGUS	0.62	1	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	AC069277.2--AC026167.1	2	5	AC069277.2	1194	chr3:6532359:+	AC026167.1	19227	chr3:6407416:+	ONLY_REF_SPLICE	YES	2	1	0.78	0.88	0.0272	0.0679	AC069277.2->chr3:6532166-6777816:+,AC026167.1->chr3:6190171-6407572:+	KYSE140_OESOPHAGUS	0.78	0.88	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	CASC9--RP11-300E4.2	3	1	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	21	0	0.16	1	0.0408	0.0136	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	KYSE140_OESOPHAGUS	0.16	1	0.0544	TRUE	0	23	0	19	23	TRUE	ACH-000823
KYSE140_OESOPHAGUS	CCAT1--CASC8	3	1	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	50	0	0.07	1	0.0408	0.0136	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	KYSE140_OESOPHAGUS	0.07	1	0.0544	TRUE	0	7	0	14	6	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MTMR4--MRPS23	3	1	MTMR4	3849	chr17:56591724:-	MRPS23	24005	chr17:55926771:-	ONLY_REF_SPLICE	YES	6	13	0.4	0.24	0.0408	0.0136	MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,MRPS23->chr17:55916842-55927417:-,mitochondrial_ribosomal_protein_S23	KYSE140_OESOPHAGUS	0.24	0.4	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	BOD1--CTB-33O18.1	2	2	BOD1	1461	chr5:173043203:-	CTB-33O18.1	12031	chr5:172999884:+	ONLY_REF_SPLICE	YES	56	0	0.07	1	0.0272	0.0272	LOCAL_INVERSION:-:+:[34315],BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,CTB-33O18.1->chr5:172989481-173000202:+	KYSE140_OESOPHAGUS	0.07	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	DTNB--NBAS	2	1	DTNB	15974	chr2:25754342:-	NBAS	50097	chr2:15629146:-	ONLY_REF_SPLICE	YES	23	11	0.12	0.21	0.0272	0.0136	DTNB->chr2:25600067-25896503:-,dystrobrevin_beta,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence	KYSE140_OESOPHAGUS	0.12	0.21	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	PUS7L--DAPK1	2	1	PUS7L	5811	chr12:44139849:-	DAPK1	20732	chr9:90219869:+	ONLY_REF_SPLICE	NO	18	39	0.14	0.07	0.0272	0.0136	PUS7L->chr12:44122410-44152620:-,pseudouridylate_synthase_7_like,DAPK1->Oncogene{Bushman},chr9:90112143-90323548:+,death_associated_protein_kinase_1	KYSE140_OESOPHAGUS	0.07	0.14	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	EIF2A--TM4SF1-AS1	2	0	EIF2A	11979	chr3:150290316:+	TM4SF1-AS1	21981	chr3:149104155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	EIF2A->chr3:150264465-150302029:+,eukaryotic_translation_initiation_factor_2A,TM4SF1-AS1->TM4SF1_antisense_RNA_1,chr3:149095565-149104370:+	KYSE140_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	NUPL2--DAP3	2	0	NUPL2	3987	chr7:23226765:+	DAP3	30023	chr1:155708400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	KYSE140_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	2	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	RP11-545D19.1--DMD	2	0	RP11-545D19.1	1357	chrX:34433298:-	DMD	13428	chrX:33038317:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RP11-545D19.1->chrX:34224842-34433654:-,DMD->chrX:31115794-33357558:-,dystrophin	KYSE140_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	TRRAP--ABHD10	2	0	TRRAP	60033	chr7:98586589:+	ABHD10	77519	chr3:111705761:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	TRRAP->chr7:98475556-98610866:+,transformation/transcription_domain_associated_protein,ABHD10->abhydrolase_domain_containing_10,chr3:111697857-111712210:+	KYSE140_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	ZFAND3--TBC1D22B	2	0	ZFAND3	1518	chr6:37787792:+	TBC1D22B	19593	chr6:37247080:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,TBC1D22B->TBC1_domain_family_member_22B,chr6:37225548-37300746:+	KYSE140_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MB21D2--ATP13A4	1	3	MB21D2	1532	chr3:192635419:-	ATP13A4	44877	chr3:193120653:-	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.0136	0.0408	MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,ATP13A4->ATPase_13A4,chr3:193119866-193310900:-	KYSE140_OESOPHAGUS	0.16	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MANBA--TIFA	1	1	MANBA	9780	chr4:103610731:-	TIFA	30438	chr4:113199590:-	ONLY_REF_SPLICE	YES	11	16	0.15	0.11	0.0136	0.0136	MANBA->chr4:103552660-103682151:-,mannosidase_beta,TIFA->TRAF_interacting_protein_with_forkhead_associated_domain,chr4:113195698-113207059:-	KYSE140_OESOPHAGUS	0.11	0.15	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	ZDHHC17--ANKLE2	1	1	ZDHHC17	1742	chr12:77158109:+	ANKLE2	39612	chr12:133331719:-	ONLY_REF_SPLICE	NO	1	34	0.67	0.06	0.0136	0.0136	HGNC_GENEFAM,ZDHHC17->chr12:77157368-77247476:+,zinc_finger_DHHC-type_containing_17,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	KYSE140_OESOPHAGUS	0.06	0.67	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000823
SNU175_LARGE_INTESTINE	SLC38A2--PTMA	112	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3222	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SNU175_LARGE_INTESTINE	1	1	1.3222	TRUE	0	0	0	10	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	SLC12A2--RAD51	28	4	SLC12A2	33584	chr5:127523981:+	RAD51	41883	chr15:40993985:+	INCL_NON_REF_SPLICE	YES	495	158	0.06	0.17	0.3306	0.0472	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+	SNU175_LARGE_INTESTINE	0.06	0.17	0.3778	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	8	27	PPP1R16A	1554	chr8:145703905:+	FOXH1	14452	chr8:145701168:-	INCL_NON_REF_SPLICE	YES	78	24	0.31	0.59	0.0944	0.3188	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.31	0.59	0.4132	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	6	34	PPP1R16A	1714	chr8:145704065:+	FOXH1	14263	chr8:145701357:-	INCL_NON_REF_SPLICE	YES	86	9	0.32	0.82	0.0708	0.4014	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.32	0.82	0.4722	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	TULP4--SRP72P2	12	7	TULP4	6081	chr6:158870208:+	SRP72P2	30848	chr6:158658622:-	INCL_NON_REF_SPLICE	YES	17	4	0.53	0.83	0.1417	0.0826	LOCAL_INVERSION:+:-:[69863],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,SRP72P2->chr6:158658368-158663829:-,signal_recognition_particle_72kDa_pseudogene_2	SNU175_LARGE_INTESTINE	0.53	0.83	0.2243	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	5	30	PPP1R16A	1585	chr8:145703936:+	FOXH1	14452	chr8:145701168:-	INCL_NON_REF_SPLICE	YES	84	24	0.29	0.59	0.059	0.3542	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.29	0.59	0.4132	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	4	30	PPP1R16A	1554	chr8:145703905:+	FOXH1	14263	chr8:145701357:-	INCL_NON_REF_SPLICE	YES	78	9	0.3	0.79	0.0472	0.3542	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.3	0.79	0.4014	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	7	6	PPP1R16A	1159	chr8:145703510:+	FOXH1	14976	chr8:145700644:-	ONLY_REF_SPLICE	YES	15	27	0.46	0.33	0.0826	0.0708	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.33	0.46	0.1534	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	4	16	PPP1R16A	1585	chr8:145703936:+	FOXH1	14976	chr8:145700644:-	INCL_NON_REF_SPLICE	YES	84	27	0.19	0.43	0.0472	0.1889	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.19	0.43	0.2361	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	6	6	PPP1R16A	1159	chr8:145703510:+	FOXH1	15014	chr8:145700606:-	ONLY_REF_SPLICE	YES	15	28	0.44	0.3	0.0708	0.0708	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.3	0.44	0.1416	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	TULP4--SRP72P2	4	6	TULP4	6023	chr6:158870150:+	SRP72P2	30799	chr6:158658671:-	INCL_NON_REF_SPLICE	YES	25	7	0.29	0.59	0.0472	0.0708	LOCAL_INVERSION:+:-:[69863],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,SRP72P2->chr6:158658368-158663829:-,signal_recognition_particle_72kDa_pseudogene_2	SNU175_LARGE_INTESTINE	0.29	0.59	0.118	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	1	16	PPP1R16A	1554	chr8:145703905:+	FOXH1	15014	chr8:145700606:-	ONLY_REF_SPLICE	YES	78	28	0.18	0.38	0.0118	0.1889	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.18	0.38	0.2007	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	1	16	PPP1R16A	1554	chr8:145703905:+	FOXH1	14976	chr8:145700644:-	ONLY_REF_SPLICE	NO	78	27	0.18	0.39	0.0118	0.1889	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.18	0.39	0.2007	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	RCC1--ICA1	4	0	RCC1	2175	chr1:28834672:+	ICA1	32692	chr7:8183602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0472	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ICA1->chr7:8152814-8302317:-,islet_cell_autoantigen_1	SNU175_LARGE_INTESTINE	1	1	0.0472	TRUE	0	6	0	3	2	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	ADK--PHF23	2	0	ADK	1142	chr10:75911101:+	PHF23	22033	chr17:7140979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ADK->adenosine_kinase,chr10:75910960-76469061:+,PHF23->PHD_finger_protein_23,chr17:7138347-7143041:-	SNU175_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	ANKMY2--AGR2	2	0	ANKMY2	5495	chr7:16664608:-	AGR2	25764	chr7:16834643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ANKMY2->ankyrin_repeat_and_MYND_domain_containing_2,chr7:16639401-16685442:-,AGR2->anterior_gradient_2,_protein_disulphide_isomerase_family_member,chr7:16831435-16873057:-	SNU175_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	HUWE1--USP9X	2	0	HUWE1	41334	chrX:53607791:-	USP9X	115078	chrX:41073821:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,USP9X->chrX:40944888-41095832:+,ubiquitin_specific_peptidase_9,_X-linked	SNU175_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	SSR1--SNRNP48	2	0	SSR1	5569	chr6:7303783:-	SNRNP48	35197	chr6:7609058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SSR1->chr6:7268539-7347679:-,signal_sequence_receptor,_alpha,SNRNP48->chr6:7590432-7612200:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_48	SNU175_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000989
HS746T_STOMACH	GLIS3--RP11-475I24.1	62	62	GLIS3	8603	chr9:4286038:-	RP11-475I24.1	37503	chr9:44345689:-	ONLY_REF_SPLICE	YES	46	0	0.73	1	0.6242	0.6242	GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-,RP11-475I24.1->chr9:44343366-44345689:-	HS746T_STOMACH	0.73	1	1.2484	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	ST7--GS1-124K5.12	23	46	ST7	1454	chr7:116593745:+	GS1-124K5.12	44028	chr7:66019824:-	ONLY_REF_SPLICE	YES	992	113	0.07	0.38	0.2315	0.4631	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,GS1-124K5.12->chr7:66010634-66057373:-	HS746T_STOMACH	0.07	0.38	0.6946	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	SLC30A7--UROC1	28	17	SLC30A7	8217	chr1:101387397:+	UROC1	35043	chr3:126214951:-	ONLY_REF_SPLICE	YES	75	0	0.38	1	0.2819	0.1711	{Klijn_CCL:Stomach=1},SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7,UROC1->chr3:126200124-126236616:-,urocanate_hydratase_1	HS746T_STOMACH	0.38	1	0.453	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	IGSF3--GGT1	28	16	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	2	7	0.96	0.86	0.2819	0.1611	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	HS746T_STOMACH	0.86	0.96	0.443	TRUE	1	1	0	8	1	TRUE	ACH-000616
HS746T_STOMACH	GPC6--GPC5	24	27	GPC6	2934	chr13:94197674:+	GPC5	28531	chr13:93518535:+	ONLY_REF_SPLICE	YES	96	0	0.35	1	0.2416	0.2718	HGNC_GENEFAM,PROTCLUST,YOSHIHARA_TCGA_num_samples[HNSC:1|KIRC:1],GPC6->chr13:93879095-95059655:+,glypican_6,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	HS746T_STOMACH	0.35	1	0.5134	TRUE	0	1	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	XYLB--GOLGA4	21	28	XYLB	17429	chr3:38420833:+	GOLGA4	63408	chr3:37402734:+	ONLY_REF_SPLICE	YES	26	297	0.65	0.14	0.2114	0.2819	XYLB->chr3:38388251-38462839:+,xylulokinase_homolog_(H._influenzae),GOLGA4->chr3:37284668-37408242:+,golgin_A4	HS746T_STOMACH	0.14	0.65	0.4933	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	CLASP1--NRCAM	22	19	CLASP1	2696	chr2:122363277:-	NRCAM	62910	chr7:107953175:-	ONLY_REF_SPLICE	YES	62	16	0.4	0.72	0.2215	0.1913	CLASP1->chr2:122095352-122407163:-,cytoplasmic_linker_associated_protein_1,NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule	HS746T_STOMACH	0.4	0.72	0.4128	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	GLIS3--RP11-475I24.1	20	20	GLIS3	6080	chr9:4299421:-	RP11-475I24.1	37503	chr9:44345689:-	ONLY_REF_SPLICE	YES	60	0	0.4	1	0.2013	0.2013	GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-,RP11-475I24.1->chr9:44343366-44345689:-	HS746T_STOMACH	0.4	1	0.4026	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	BIRC6--ITGA9	19	15	BIRC6	24030	chr2:32673996:+	ITGA9	99672	chr3:37567517:+	ONLY_REF_SPLICE	YES	48	0	0.41	1	0.1913	0.151	BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,ITGA9->Oncogene{Bushman},chr3:37493606-37865005:+,integrin_subunit_alpha_9	HS746T_STOMACH	0.41	1	0.3423	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	PXN--PLA2G1B	16	25	PXN	1155	chr12:120703420:-	PLA2G1B	24329	chr12:120763823:-	ONLY_REF_SPLICE	YES	120	0	0.25	1	0.1611	0.2517	{Klijn_CCL:Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[56340],PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,PLA2G1B->chr12:120759914-120765592:-,phospholipase_A2_group_IB	HS746T_STOMACH	0.25	1	0.4128	TRUE	0	2	0	2	2	TRUE	ACH-000616
HS746T_STOMACH	XYLB--GOLGA4	13	22	XYLB	17429	chr3:38420833:+	GOLGA4	64471	chr3:37407571:+	ONLY_REF_SPLICE	YES	26	303	0.57	0.1	0.1309	0.2215	XYLB->chr3:38388251-38462839:+,xylulokinase_homolog_(H._influenzae),GOLGA4->chr3:37284668-37408242:+,golgin_A4	HS746T_STOMACH	0.1	0.57	0.3524	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	ZBTB40--ZMYM4	15	14	ZBTB40	1154	chr1:22778497:+	ZMYM4	29791	chr1:35790961:+	ONLY_REF_SPLICE	YES	23	36	0.56	0.45	0.151	0.1409	ZBTB40->chr1:22778344-22857650:+,zinc_finger_and_BTB_domain_containing_40,ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4	HS746T_STOMACH	0.45	0.56	0.2919	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	PARD3--RP11-297A16.2	17	5	PARD3	1450	chr10:35103804:-	RP11-297A16.2	41752	chr10:35389988:-	ONLY_REF_SPLICE	YES	33	0	0.4	1	0.1711	0.0503	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,RP11-297A16.2->chr10:35386934-35415948:-	HS746T_STOMACH	0.4	1	0.2214	TRUE	0	3	0	1	3	TRUE	ACH-000616
HS746T_STOMACH	EPHB2--TMEM39B	16	0	EPHB2	1205	chr1:23037536:+	TMEM39B	29462	chr1:32540552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1611	0	EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+,TMEM39B->chr1:32537632-32568467:+,transmembrane_protein_39B	HS746T_STOMACH	1	1	0.1611	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	CHST11--SYK	12	13	CHST11	5138	chr12:104995769:+	SYK	16838	chr9:93606140:+	ONLY_REF_SPLICE	YES	42	0	0.37	1	0.1208	0.1309	CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase	HS746T_STOMACH	0.37	1	0.2517	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	LPAR1--SUSD1	15	0	LPAR1	1535	chr9:113800447:-	SUSD1	32863	chr9:114814718:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.151	0	LPAR1->Oncogene{Bushman},chr9:113635543-113800981:-,lysophosphatidic_acid_receptor_1,SUSD1->chr9:114803065-114937688:-,sushi_domain_containing_1	HS746T_STOMACH	1	1	0.151	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	CTB-30L5.1--SLC26A3	13	4	CTB-30L5.1	1155	chr7:106239200:-	SLC26A3	15832	chr7:107420208:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1309	0.0403	CTB-30L5.1->chr7:106211393-106239354:-,SLC26A3->chr7:107405912-107443670:-,solute_carrier_family_26_member_3	HS746T_STOMACH	0.94	1	0.1712	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	CUX1--AC016700.2	7	4	CUX1	18624	chr7:101801888:+	AC016700.2	59392	chr2:70321066:+	ONLY_REF_SPLICE	YES	188	0	0.06	1	0.0705	0.0403	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,AC016700.2->chr2:70316853-70323232:+	HS746T_STOMACH	0.06	1	0.1108	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	ZFP62--SIMC1	6	6	ZFP62	3439	chr5:180278381:-	SIMC1	27372	chr5:175772186:+	ONLY_REF_SPLICE	YES	54	66	0.18	0.15	0.0604	0.0604	ZFP62->ZFP62_zinc_finger_protein,chr5:180274611-180288286:-,SIMC1->SUMO_interacting_motifs_containing_1,chr5:175665365-175772994:+	HS746T_STOMACH	0.15	0.18	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	IGSF3--GGT1	4	13	IGSF3	13000	chr1:117131317:-	GGT1	26901	chr22:25003923:+	INCL_NON_REF_SPLICE	YES	2	6	0.89	0.74	0.0403	0.1309	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	HS746T_STOMACH	0.74	0.89	0.1712	TRUE	1	1	0	8	1	TRUE	ACH-000616
HS746T_STOMACH	ZFP62--SIMC1	4	10	ZFP62	3439	chr5:180278381:-	SIMC1	26287	chr5:175764065:+	ONLY_REF_SPLICE	YES	54	77	0.21	0.15	0.0403	0.1007	ZFP62->ZFP62_zinc_finger_protein,chr5:180274611-180288286:-,SIMC1->SUMO_interacting_motifs_containing_1,chr5:175665365-175772994:+	HS746T_STOMACH	0.15	0.21	0.141	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	XYLB--GOLGA4	2	17	XYLB	16332	chr3:38418482:+	GOLGA4	63408	chr3:37402734:+	ONLY_REF_SPLICE	YES	27	297	0.41	0.06	0.0201	0.1711	XYLB->chr3:38388251-38462839:+,xylulokinase_homolog_(H._influenzae),GOLGA4->chr3:37284668-37408242:+,golgin_A4	HS746T_STOMACH	0.06	0.41	0.1912	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	XYLB--GOLGA4	3	12	XYLB	16332	chr3:38418482:+	GOLGA4	64471	chr3:37407571:+	ONLY_REF_SPLICE	YES	27	303	0.36	0.05	0.0302	0.1208	XYLB->chr3:38388251-38462839:+,xylulokinase_homolog_(H._influenzae),GOLGA4->chr3:37284668-37408242:+,golgin_A4	HS746T_STOMACH	0.05	0.36	0.151	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	EDEM2--PTPRT	4	6	EDEM2	2221	chr20:33859808:-	PTPRT	31626	chr20:41101202:-	ONLY_REF_SPLICE	YES	14	0	0.42	1	0.0403	0.0604	EDEM2->ER_degradation_enhancing_alpha-mannosidase_like_protein_2,chr20:33703167-33865928:-,PTPRT->Oncogene{Bushman},chr20:40701392-41818610:-,protein_tyrosine_phosphatase,_receptor_type_T	HS746T_STOMACH	0.42	1	0.1007	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	SLC30A7--UROC1	1	18	SLC30A7	10458	chr1:101431474:+	UROC1	35043	chr3:126214951:-	ONLY_REF_SPLICE	YES	60	0	0.24	1	0.0101	0.1812	{Klijn_CCL:Stomach=1},SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7,UROC1->chr3:126200124-126236616:-,urocanate_hydratase_1	HS746T_STOMACH	0.24	1	0.1913	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	AGO3--PPP6R3	3	9	AGO3	25372	chr1:36524539:+	PPP6R3	43045	chr11:68272613:+	INCL_NON_REF_SPLICE	YES	31	56	0.28	0.18	0.0302	0.0906	AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3	HS746T_STOMACH	0.18	0.28	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	BIRC6--ITGA9	4	5	BIRC6	22896	chr2:32670736:+	ITGA9	100718	chr3:37574805:+	ONLY_REF_SPLICE	YES	62	0	0.13	1	0.0403	0.0503	BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,ITGA9->Oncogene{Bushman},chr3:37493606-37865005:+,integrin_subunit_alpha_9	HS746T_STOMACH	0.13	1	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	HSP90B1--VN2R1P	5	0	HSP90B1	8016	chr12:104333369:+	VN2R1P	18150	chr3:155737499:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1,VN2R1P->chr3:155737435-155755475:+,vomeronasal_2_receptor_1_pseudogene	HS746T_STOMACH	1	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	BIRC6--ITGA9	2	11	BIRC6	24030	chr2:32673996:+	ITGA9	100718	chr3:37574805:+	ONLY_REF_SPLICE	NO	48	0	0.21	1	0.0201	0.1107	BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,ITGA9->Oncogene{Bushman},chr3:37493606-37865005:+,integrin_subunit_alpha_9	HS746T_STOMACH	0.21	1	0.1308	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	CENPP--ASZ1	3	6	CENPP	13722	chr9:95378345:+	ASZ1	25716	chr7:117025863:-	INCL_NON_REF_SPLICE	YES	17	0	0.35	1	0.0302	0.0604	CENPP->centromere_protein_P,chr9:95087766-95382815:+,ASZ1->ankyrin_repeat,_SAM_and_basic_leucine_zipper_domain_containing_1,chr7:117003276-117068177:-	HS746T_STOMACH	0.35	1	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	AC002066.1--SYK	3	4	AC002066.1	1112	chr7:116139408:-	SYK	13879	chr9:93606140:+	ONLY_REF_SPLICE	YES	36	0	0.16	1	0.0302	0.0403	AC002066.1->chr7:115878314-116139519:-,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase	HS746T_STOMACH	0.16	1	0.0705	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	HSP90B1--VN2R1P	4	0	HSP90B1	6912	chr12:104332216:+	VN2R1P	18151	chr3:155737500:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1,VN2R1P->chr3:155737435-155755475:+,vomeronasal_2_receptor_1_pseudogene	HS746T_STOMACH	1	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	LPAR1--SUSD1	3	3	LPAR1	1861	chr9:113800121:-	SUSD1	32863	chr9:114814718:-	ONLY_REF_SPLICE	YES	0	42	1	0.12	0.0302	0.0302	LPAR1->Oncogene{Bushman},chr9:113635543-113800981:-,lysophosphatidic_acid_receptor_1,SUSD1->chr9:114803065-114937688:-,sushi_domain_containing_1	HS746T_STOMACH	0.12	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	CTB-111H14.1--SLC26A3	2	5	CTB-111H14.1	6591	chr7:106250843:-	SLC26A3	28309	chr7:107420208:-	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0201	0.0503	CTB-111H14.1->chr7:106012697-106410653:-,SLC26A3->chr7:107405912-107443670:-,solute_carrier_family_26_member_3	HS746T_STOMACH	0.88	1	0.0704	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	PPFIBP1--SMCO2	3	0	PPFIBP1	4200	chr12:27731172:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	HS746T_STOMACH	1	1	0.0302	TRUE	0	1	0	5	1	TRUE	ACH-000616
HS746T_STOMACH	BIRC6--ITGA9	1	7	BIRC6	22896	chr2:32670736:+	ITGA9	99672	chr3:37567517:+	ONLY_REF_SPLICE	YES	62	0	0.11	1	0.0101	0.0705	BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,ITGA9->Oncogene{Bushman},chr3:37493606-37865005:+,integrin_subunit_alpha_9	HS746T_STOMACH	0.11	1	0.0806	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	GPC6--GPC5	1	6	GPC6	1775	chr13:93879869:+	GPC5	28531	chr13:93518535:+	ONLY_REF_SPLICE	YES	93	0	0.07	1	0.0101	0.0604	HGNC_GENEFAM,PROTCLUST,YOSHIHARA_TCGA_num_samples[HNSC:1|KIRC:1],GPC6->chr13:93879095-95059655:+,glypican_6,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	HS746T_STOMACH	0.07	1	0.0705	TRUE	0	3	0	3	3	TRUE	ACH-000616
HS746T_STOMACH	AC093616.4--KDM3A	2	0	AC093616.4	14971	chr2:88037624:+	KDM3A	29064	chr2:86691176:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	AC093616.4->chr2:88000503-88038766:+,KDM3A->Oncogene{Bushman},chr2:86667770-86719839:+,lysine_demethylase_3A	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	APPBP2--TRAF3	2	0	APPBP2	17701	chr17:58531663:-	TRAF3	41973	chr14:103369592:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-,TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	C17orf76-AS1--TM9SF4	2	0	C17orf76-AS1	1593	chr17:16342728:+	TM9SF4	23690	chr20:30738425:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	C17orf76-AS1->chr17:16342136-16381992:+,TM9SF4->chr20:30697309-30755061:+,transmembrane_9_superfamily_member_4	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	CLASP1--NRCAM	2	0	CLASP1	1216	chr2:122406948:-	NRCAM	62910	chr7:107953175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CLASP1->chr2:122095352-122407163:-,cytoplasmic_linker_associated_protein_1,NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	DIAPH1--ETFA	2	0	DIAPH1	6381	chr5:140961879:-	ETFA	48345	chr15:76518270:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	DIAPH1->chr5:140894583-140998622:-,diaphanous_related_formin_1,ETFA->chr15:76507696-76603813:-,electron_transfer_flavoprotein_alpha_subunit	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	ECM1--CAPRIN2	2	0	ECM1	5729	chr1:150485288:+	CAPRIN2	11099	chr12:30906493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	ECM1->Oncogene{Bushman},chr1:150480538-150486265:+,extracellular_matrix_protein_1,CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	EMC4--TRRAP	2	0	EMC4	1660	chr15:34517859:+	TRRAP	18282	chr7:98497045:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	EMC4->ER_membrane_protein_complex_subunit_4,chr15:34517200-34522357:+,TRRAP->chr7:98475556-98610866:+,transformation/transcription_domain_associated_protein	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	FBRS--HDAC10	2	0	FBRS	11437	chr16:30680300:+	HDAC10	19386	chr22:50686721:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	FBRS->chr16:30669752-30682135:+,fibrosin,HDAC10->chr22:50683612-50689834:-,histone_deacetylase_10	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	FIGN--MTX2	2	0	FIGN	2110	chr2:164591413:-	MTX2	18733	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	FIGN->chr2:164449906-164592522:-,fidgetin,MTX2->chr2:177134123-177202753:+,metaxin_2	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	FTX--RLIM	2	0	FTX	6478	chrX:73500229:-	RLIM	22362	chrX:73815835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	FTX->FTX_transcript,_XIST_regulator_(non-protein_coding),chrX:73183790-73513409:-,RLIM->chrX:73805052-73834452:-,ring_finger_protein,_LIM_domain_interacting	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	GMDS-AS1--KIAA1045	2	0	GMDS-AS1	3357	chr6:2263918:+	KIAA1045	36617	chr9:34976532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,KIAA1045->chr9:34957484-34982541:+	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	HMMR--NUDCD2	2	0	HMMR	1536	chr5:162887744:+	NUDCD2	22148	chr5:162884616:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	LOCAL_INVERSION:+:-:[63],HMMR->chr5:162887209-162918947:+,hyaluronan_mediated_motility_receptor,NUDCD2->NudC_domain_containing_2,chr5:162873532-162887146:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	IFFO1--AP2B1	2	0	IFFO1	6653	chr12:6657231:-	AP2B1	18893	chr17:33925249:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	IFFO1->chr12:6647541-6665239:-,intermediate_filament_family_orphan_1,AP2B1->adaptor_related_protein_complex_2_beta_1_subunit,chr17:33905065-34053436:+	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	JKAMP--PCNXL4	2	0	JKAMP	1151	chr14:59951311:+	PCNXL4	20900	chr14:60582437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	JKAMP->JNK1/MAPK8-associated_membrane_protein,chr14:59951161-59972128:+,PCNXL4->chr14:60558629-60635851:+	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	LRRFIP1--FAM126A	2	0	LRRFIP1	25426	chr2:238668848:+	FAM126A	55100	chr7:22985782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,FAM126A->chr7:22980878-23053749:-,family_with_sequence_similarity_126_member_A	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	MTFR1L--UBE2I	2	0	MTFR1L	2337	chr1:26146520:+	UBE2I	20779	chr16:1362348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	MTFR1L->chr1:26145131-26159432:+,mitochondrial_fission_regulator_1_like,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	NQO2--RPL17	2	0	NQO2	9651	chr6:3006793:+	RPL17	19776	chr18:47017954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+,RPL17->chr18:47014851-47018906:-,ribosomal_protein_L17	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	NRIP1--TIAM1	2	0	NRIP1	3459	chr21:16386665:-	TIAM1	22544	chr21:32639299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	PAPSS2--ANK3	2	0	PAPSS2	11954	chr10:89503398:+	ANK3	26720	chr10:62039397:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	PAPSS2->3'-phosphoadenosine_5'-phosphosulfate_synthase_2,chr10:89419370-89507462:+,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	PLA2G4B--POLDIP2	2	0	PLA2G4B	9498	chr15:42134789:+	POLDIP2	23043	chr17:26678826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	PLA2G4B->chr15:42120283-42140345:+,phospholipase_A2_group_IVB,POLDIP2->chr17:26673659-26684545:-,polymerase_(DNA)_delta_interacting_protein_2	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	PRPF40A--DYNLT1	2	0	PRPF40A	5065	chr2:153551056:-	DYNLT1	34120	chr6:159062392:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	PRPF40A->chr2:153508107-153574511:-,pre-mRNA_processing_factor_40_homolog_A,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	RP11-66B24.2--RP11-464F9.1	2	0	RP11-66B24.2	3613	chr15:101395553:+	RP11-464F9.1	22388	chr10:75457478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RP11-66B24.2->chr15:101389766-101402376:+,RP11-464F9.1->chr10:75434053-75490272:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	SACM1L--KLC1	2	0	SACM1L	12787	chr3:45765035:+	KLC1	43827	chr14:104158696:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	SACM1L->SAC1_suppressor_of_actin_mutations_1-like_(yeast),chr3:45730548-45786916:+,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	SLK--PHF14	2	0	SLK	4396	chr10:105752891:+	PHF14	50022	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	SLK->STE20_like_kinase,chr10:105726959-105788991:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	SMYD3--SCCPDH	2	0	SMYD3	8315	chr1:246490503:-	SCCPDH	37086	chr1:246903474:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,SCCPDH->chr1:246887349-246931439:+,saccharopine_dehydrogenase_(putative)	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	STIL--ATPAF1	2	0	STIL	1112	chr1:47779708:-	ATPAF1	37261	chr1:47110928:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	STIL->Oncogene{Bushman},SCL/TAL1_interrupting_locus,chr1:47715811-47779819:-,ATPAF1->ATP_synthase_mitochondrial_F1_complex_assembly_factor_1,chr1:47098409-47139539:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	TRAF3IP2-AS1--TPRKB	2	0	TRAF3IP2-AS1	2351	chr6:111806064:+	TPRKB	18588	chr2:73959827:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	TRAF3IP2-AS1->TRAF3IP2_antisense_RNA_1,chr6:111804714-111919505:+,TPRKB->TP53RK_binding_protein,chr2:73956231-73964527:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	TSPAN13--VTI1A	2	0	TSPAN13	1496	chr7:16793655:+	VTI1A	19212	chr10:114286846:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	TSPAN13->chr7:16793160-16824161:+,tetraspanin_13,VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	CHST11--SYK	1	2	CHST11	2941	chr12:104851292:+	SYK	16838	chr9:93606140:+	ONLY_REF_SPLICE	YES	49	0	0.06	1	0.0101	0.0201	CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase	HS746T_STOMACH	0.06	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	PLXDC2--AC096559.1	1	2	PLXDC2	1953	chr10:20106120:+	AC096559.1	43392	chr2:12698332:+	ONLY_REF_SPLICE	YES	23	0	0.12	1	0.0101	0.0201	PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2,AC096559.1->chr2:11988748-12718474:+	HS746T_STOMACH	0.12	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	SLC30A7--UROC1	1	2	SLC30A7	7081	chr1:101383683:+	UROC1	35043	chr3:126214951:-	ONLY_REF_SPLICE	NO	66	0	0.04	1	0.0101	0.0201	{Klijn_CCL:Stomach=1},SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7,UROC1->chr3:126200124-126236616:-,urocanate_hydratase_1	HS746T_STOMACH	0.04	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000616
KU1919_URINARY_TRACT	SMCO4--MS4A12	136	26	SMCO4	1233	chr11:93276442:-	MS4A12	15341	chr11:60274201:+	ONLY_REF_SPLICE	YES	3	0	0.98	1	2.0449	0.3909	SMCO4->chr11:93211638-93276674:-,single-pass_membrane_protein_with_coiled-coil_domains_4,MS4A12->chr11:60260251-60274903:+,membrane_spanning_4-domains_A12	KU1919_URINARY_TRACT	0.98	1	2.4358	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MKLN1-AS1--ABCA13	55	9	MKLN1-AS1	13605	chr7:130630479:-	ABCA13	85870	chr7:48559637:+	ONLY_REF_SPLICE	YES	3	3	0.96	0.96	0.827	0.1353	MKLN1-AS1->chr7:130626519-130794935:-,ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+	KU1919_URINARY_TRACT	0.96	0.96	0.9623	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	TBC1D32--LINC00511	37	14	TBC1D32	27616	chr6:121484116:-	LINC00511	47546	chr17:70634989:-	ONLY_REF_SPLICE	YES	8	0	0.86	1	0.5563	0.2105	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	KU1919_URINARY_TRACT	0.86	1	0.7668	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MCUR1--SRSF10	32	0	MCUR1	11892	chr6:13790712:-	SRSF10	27160	chr1:24296868:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4812	0	MCUR1->chr6:13786789-13814800:-,mitochondrial_calcium_uniporter_regulator_1,SRSF10->chr1:24291294-24307417:-,serine/arginine-rich_splicing_factor_10	KU1919_URINARY_TRACT	1	1	0.4812	TRUE	1	0	0	3	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	ARHGAP10--RP11-752L20.5	14	7	ARHGAP10	2624	chr4:148744108:+	RP11-752L20.5	37811	chr4:148493833:+	ONLY_REF_SPLICE	YES	26	0	0.45	1	0.2105	0.1053	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,RP11-752L20.5->chr4:148488758-148515739:+	KU1919_URINARY_TRACT	0.45	1	0.3158	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	TBC1D32--GPT2	15	2	TBC1D32	27616	chr6:121484116:-	GPT2	48644	chr16:46931560:+	ONLY_REF_SPLICE	YES	8	29	0.68	0.37	0.2255	0.0301	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,GPT2->chr16:46918290-46965209:+,glutamic_pyruvate_transaminase_(alanine_aminotransferase)_2	KU1919_URINARY_TRACT	0.37	0.68	0.2556	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	RASSF3--COLEC12	13	3	RASSF3	1231	chr12:65004523:+	COLEC12	24138	chr18:320064:-	ONLY_REF_SPLICE	YES	5	0	0.76	1	0.1955	0.0451	RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+,COLEC12->chr18:319361-500722:-,collectin_subfamily_member_12	KU1919_URINARY_TRACT	0.76	1	0.2406	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	THOC1--RASSF3	10	6	THOC1	17988	chr18:223440:-	RASSF3	27362	chr12:65078567:+	ONLY_REF_SPLICE	YES	38	7	0.3	0.7	0.1504	0.0902	THOC1->THO_complex_1,chr18:214520-268050:-,RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+	KU1919_URINARY_TRACT	0.3	0.7	0.2406	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	SHANK2--RPL26L1	6	0	SHANK2	30935	chr11:70544793:-	RPL26L1	63719	chr5:172386868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0902	0	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,RPL26L1->chr5:172385732-172396774:+,ribosomal_protein_L26_like_1	KU1919_URINARY_TRACT	1	1	0.0902	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MKLN1-AS1--ABCA13	4	5	MKLN1-AS1	13605	chr7:130630479:-	ABCA13	85940	chr7:48559707:+	INCL_NON_REF_SPLICE	YES	3	3	0.75	0.75	0.0601	0.0752	MKLN1-AS1->chr7:130626519-130794935:-,ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+	KU1919_URINARY_TRACT	0.75	0.75	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	SIRT3--SIGIRR	3	7	SIRT3	5161	chr11:230452:-	SIGIRR	18301	chr11:410027:-	ONLY_REF_SPLICE	YES	14	26	0.42	0.28	0.0451	0.1053	SIRT3->chr11:215458-236931:-,sirtuin_3,SIGIRR->chr11:405716-417455:-,single_immunoglobulin_and_toll-interleukin_1_receptor_(TIR)_domain	KU1919_URINARY_TRACT	0.28	0.42	0.1504	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	SLC9A7--CXorf31	4	2	SLC9A7	1351	chrX:46618140:-	CXorf31	23411	chrX:46754016:-	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0601	0.0301	SLC9A7->chrX:46464753-46618490:-,solute_carrier_family_9_member_A7,CXorf31->chrX:46746852-46759138:-	KU1919_URINARY_TRACT	0.3	1	0.0902	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	FOSL1--DRAP1	4	0	FOSL1	1333	chr11:65667712:-	DRAP1	9128	chr11:65687251:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0601	0	LOCAL_INVERSION:-:+:[18684],FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	KU1919_URINARY_TRACT	1	1	0.0601	TRUE	0	0	0	6	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	SLC9A7--CXorf31	3	2	SLC9A7	1351	chrX:46618140:-	CXorf31	24469	chrX:46749814:-	ONLY_REF_SPLICE	NO	14	0	0.26	1	0.0451	0.0301	SLC9A7->chrX:46464753-46618490:-,solute_carrier_family_9_member_A7,CXorf31->chrX:46746852-46759138:-	KU1919_URINARY_TRACT	0.26	1	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	ARSG--PPA2	2	0	ARSG	18733	chr17:66397591:+	PPA2	38439	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	ARSG->arylsulfatase_G,chr17:66255323-66418872:+,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	ATXN1--EIF4A2	2	0	ATXN1	15061	chr6:16522858:-	EIF4A2	38500	chr3:186506099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	ATXN1->ataxin_1,chr6:16299343-16761722:-,EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	CHSY1--SDCCAG8	2	0	CHSY1	4362	chr15:101775287:-	SDCCAG8	20567	chr1:243449574:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	CHSY1->chondroitin_sulfate_synthase_1,chr15:101715928-101792137:-,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	CYB5RL--YPEL3	2	0	CYB5RL	4286	chr1:54656421:-	YPEL3	22367	chr16:30104120:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	CYB5RL->chr1:54638009-54665709:-,cytochrome_b5_reductase_like,YPEL3->chr16:30103635-30108236:-,yippee_like_3	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MBD2--CTD-2171N6.1	2	0	MBD2	1771	chr18:51750388:-	CTD-2171N6.1	19159	chr18:52784314:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2,CTD-2171N6.1->chr18:52773135-52791537:-	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	RCC1--RHOA	2	0	RCC1	2175	chr1:28834672:+	RHOA	22152	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	1	0	6	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	SEPT9--ADAT1	2	0	SEPT9	1986	chr17:75277636:+	ADAT1	47076	chr16:75656362:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,ADAT1->adenosine_deaminase,_tRNA_specific_1,chr16:75630879-75657198:-	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MKLN1-AS1--ABCA13	1	3	MKLN1-AS1	11360	chr7:130668812:-	ABCA13	85870	chr7:48559637:+	ONLY_REF_SPLICE	YES	3	3	0.57	0.57	0.015	0.0451	MKLN1-AS1->chr7:130626519-130794935:-,ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+	KU1919_URINARY_TRACT	0.57	0.57	0.0601	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	PDGFB--SCUBE1	1	2	PDGFB	5199	chr22:39631783:-	SCUBE1	39576	chr22:43608598:-	ONLY_REF_SPLICE	NO	5	5	0.38	0.38	0.015	0.0301	PDGFB->Oncogene{Bushman},chr22:39619364-39640756:-,platelet_derived_growth_factor_subunit_B,SCUBE1->chr22:43593289-43739394:-,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_1	KU1919_URINARY_TRACT	0.38	0.38	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	PNPLA3--KIAA1644	1	2	PNPLA3	3895	chr22:44324769:+	KIAA1644	18948	chr22:44696857:-	ONLY_REF_SPLICE	NO	8	0	0.27	1	0.015	0.0301	PNPLA3->chr22:44319619-44360368:+,patatin_like_phospholipase_domain_containing_3,KIAA1644->KIAA1644,chr22:44639547-44708731:-	KU1919_URINARY_TRACT	0.27	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	ZDHHC17--CSRP2	1	1	ZDHHC17	3354	chr12:77162981:+	CSRP2	33980	chr12:77260041:-	ONLY_REF_SPLICE	YES	12	2	0.14	0.5	0.015	0.015	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:+:-:[5019],ZDHHC17->chr12:77157368-77247476:+,zinc_finger_DHHC-type_containing_17,CSRP2->chr12:77252495-77272840:-,cysteine_and_glycine_rich_protein_2	KU1919_URINARY_TRACT	0.14	0.5	0.03	TRUE	0	0	0	1	0	TRUE	ACH-000486
NCIH1155_LUNG	AL589743.1--RP11-536C10.17	4	4	AL589743.1	9393	chr14:19680685:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	118	0	0.06	1	0.0399	0.0399	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH1155_LUNG	0.06	1	0.0798	TRUE	0	8	0	6	8	TRUE	ACH-000980
NCIH1155_LUNG	AP000525.9--LA16c-60G3.6	4	4	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	44	0	0.15	1	0.0399	0.0399	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH1155_LUNG	0.15	1	0.0798	TRUE	0	8	0	10	8	TRUE	ACH-000980
NCIH1155_LUNG	TMLHE--CMC4	4	0	TMLHE	2332	chrX:154842453:-	CMC4	18768	chrX:154292308:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,CMC4->C-x(9)-C_motif_containing_4,chrX:154289897-154299637:-	NCIH1155_LUNG	1	1	0.0399	TRUE	1	2	0	1	0	TRUE	ACH-000980
NCIH1155_LUNG	DNAJC24--IMMP1L	2	0	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	NCIH1155_LUNG	1	1	0.02	TRUE	0	4	0	9	1	TRUE	ACH-000980
NCIH1155_LUNG	EXD3--RABL6	2	0	EXD3	1149	chr9:140317566:-	RABL6	36936	chr9:139717977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	NCIH1155_LUNG	1	1	0.02	TRUE	1	0	0	3	0	TRUE	ACH-000980
NCIH1155_LUNG	HNRNPA2B1--NDUFS6	2	0	HNRNPA2B1	1958	chr7:26240192:-	NDUFS6	16562	chr5:1814453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,NDUFS6->NADH:ubiquinone_oxidoreductase_subunit_S6,chr5:1801514-1816719:+	NCIH1155_LUNG	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000980
NCIH1155_LUNG	VWDE--PHF14	2	0	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1155_LUNG	1	1	0.02	TRUE	0	6	0	17	2	TRUE	ACH-000980
769P_KIDNEY	IGSF3--GGT1	92	29	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	47	180	0.72	0.4	1.1243	0.3544	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	769P_KIDNEY	0.4	0.72	1.4787	TRUE	1	1	0	8	1	TRUE	ACH-000411
769P_KIDNEY	RNF115--TRNAU1AP	78	18	RNF115	1306	chr1:145611341:+	TRNAU1AP	29338	chr1:28897688:+	ONLY_REF_SPLICE	YES	12	29	0.89	0.77	0.9533	0.22	{Klijn_CCL:Kidney=1},RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1	769P_KIDNEY	0.77	0.89	1.1733	TRUE	0	0	0	1	0	TRUE	ACH-000411
769P_KIDNEY	RNF115--TRNAU1AP	22	5	RNF115	1306	chr1:145611341:+	TRNAU1AP	30029	chr1:28898379:+	ONLY_REF_SPLICE	YES	12	38	0.69	0.42	0.2689	0.0611	{Klijn_CCL:Kidney=1},RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1	769P_KIDNEY	0.42	0.69	0.33	TRUE	0	0	0	1	0	TRUE	ACH-000411
769P_KIDNEY	IGSF3--GGT1	9	27	IGSF3	13000	chr1:117131317:-	GGT1	26901	chr22:25003923:+	INCL_NON_REF_SPLICE	YES	47	179	0.43	0.17	0.11	0.33	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	769P_KIDNEY	0.17	0.43	0.44	TRUE	1	1	0	8	1	TRUE	ACH-000411
769P_KIDNEY	PSAP--EEF2	3	0	PSAP	8550	chr10:73581651:-	EEF2	25206	chr19:3976572:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.05%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	769P_KIDNEY	1	1	0.0367	TRUE	0	0	0	2	0	TRUE	ACH-000411
769P_KIDNEY	RNF115--TRNAU1AP	2	4	RNF115	1306	chr1:145611341:+	TRNAU1AP	32193	chr1:28904012:+	ONLY_REF_SPLICE	YES	12	35	0.33	0.15	0.0244	0.0489	{Klijn_CCL:Kidney=1},RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1	769P_KIDNEY	0.15	0.33	0.0733	TRUE	0	0	0	1	0	TRUE	ACH-000411
769P_KIDNEY	SLC2A13--AC079630.2	2	1	SLC2A13	11825	chr12:40223905:-	AC079630.2	25253	chr12:40561050:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0244	0.0122	LOCAL_INVERSION:-:+:[50150],SLC2A13->chr12:40148823-40499891:-,solute_carrier_family_2_member_13,AC079630.2->chr12:40550041-40561509:+	769P_KIDNEY	0.43	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000411
769P_KIDNEY	CTDSPL2--CASC4	2	0	CTDSPL2	1539	chr15:44719970:+	CASC4	38385	chr15:44671888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_REARRANGEMENT:+:[11476],CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+	769P_KIDNEY	1	1	0.0244	TRUE	0	0	0	4	0	TRUE	ACH-000411
NCIH2452_PLEURA	TAF15--MPP2	41	28	TAF15	4646	chr17:34144759:+	MPP2	26279	chr17:41981861:-	ONLY_REF_SPLICE	YES	239	0	0.22	1	0.416	0.2841	TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+,MPP2->chr17:41952725-41987068:-,membrane_palmitoylated_protein_2	NCIH2452_PLEURA	0.22	1	0.7001	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	EOGT--LRRC3B	31	21	EOGT	9032	chr3:69050759:-	LRRC3B	28181	chr3:26751004:+	ONLY_REF_SPLICE	YES	15	0	0.78	1	0.3145	0.2131	EOGT->EGF_domain_specific_O-linked_N-acetylglucosamine_transferase,chr3:69024365-69063112:-,LRRC3B->chr3:26664297-26752267:+,leucine_rich_repeat_containing_3B	NCIH2452_PLEURA	0.78	1	0.5276	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	SENP5--NCBP2	26	25	SENP5	12675	chr3:196657771:+	NCBP2	19540	chr3:196669418:-	INCL_NON_REF_SPLICE	YES	27	0	0.65	1	0.2638	0.2537	LOCAL_INVERSION:+:-:[688],SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	NCIH2452_PLEURA	0.65	1	0.5175	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	EOGT--LRRC3B	21	30	EOGT	9032	chr3:69050759:-	LRRC3B	27109	chr3:26742716:+	ONLY_REF_SPLICE	YES	15	0	0.77	1	0.2131	0.3044	EOGT->EGF_domain_specific_O-linked_N-acetylglucosamine_transferase,chr3:69024365-69063112:-,LRRC3B->chr3:26664297-26752267:+,leucine_rich_repeat_containing_3B	NCIH2452_PLEURA	0.77	1	0.5175	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	HOOK3--ADAM32	22	20	HOOK3	2343	chr8:42761401:+	ADAM32	66272	chr8:39103602:+	ONLY_REF_SPLICE	YES	18	8	0.7	0.84	0.2232	0.2029	HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+	NCIH2452_PLEURA	0.7	0.84	0.4261	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	EOGT--LRRC3B	19	16	EOGT	7925	chr3:69053529:-	LRRC3B	28181	chr3:26751004:+	ONLY_REF_SPLICE	YES	15	0	0.7	1	0.1928	0.1623	EOGT->EGF_domain_specific_O-linked_N-acetylglucosamine_transferase,chr3:69024365-69063112:-,LRRC3B->chr3:26664297-26752267:+,leucine_rich_repeat_containing_3B	NCIH2452_PLEURA	0.7	1	0.3551	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	SENP5--NCBP2	8	35	SENP5	14310	chr3:196659406:+	NCBP2	19540	chr3:196669418:-	INCL_NON_REF_SPLICE	YES	59	0	0.42	1	0.0812	0.3551	LOCAL_INVERSION:+:-:[688],SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	NCIH2452_PLEURA	0.42	1	0.4363	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	SENP5--NCBP2	6	39	SENP5	15556	chr3:196660652:+	NCBP2	19533	chr3:196669425:-	INCL_NON_REF_SPLICE	YES	25	0	0.64	1	0.0609	0.3957	LOCAL_INVERSION:+:-:[688],SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	NCIH2452_PLEURA	0.64	1	0.4566	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	USP32--TANC2	13	4	USP32	4918	chr17:58422842:-	TANC2	68482	chr17:61457079:+	ONLY_REF_SPLICE	YES	104	5	0.14	0.77	0.1319	0.0406	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2	NCIH2452_PLEURA	0.14	0.77	0.1725	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	HOOK3--ADAM32	7	25	HOOK3	2343	chr8:42761401:+	ADAM32	63979	chr8:39089546:+	ONLY_REF_SPLICE	YES	18	3	0.64	0.91	0.071	0.2537	HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+	NCIH2452_PLEURA	0.64	0.91	0.3247	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	ASB16-AS1--LRRC46	8	10	ASB16-AS1	2317	chr17:42260298:-	LRRC46	14188	chr17:45914116:+	ONLY_REF_SPLICE	YES	32	3	0.36	0.86	0.0812	0.1015	ASB16-AS1->ASB16_antisense_RNA_1,chr17:42253341-42264085:-,LRRC46->chr17:45908993-45915079:+,leucine_rich_repeat_containing_46	NCIH2452_PLEURA	0.36	0.86	0.1827	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	SENP5--NCBP2	3	27	SENP5	12743	chr3:196657839:+	NCBP2	19540	chr3:196669418:-	INCL_NON_REF_SPLICE	YES	31	0	0.49	1	0.0304	0.274	LOCAL_INVERSION:+:-:[688],SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	NCIH2452_PLEURA	0.49	1	0.3044	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	EOGT--LRRC3B	4	21	EOGT	7925	chr3:69053529:-	LRRC3B	27109	chr3:26742716:+	ONLY_REF_SPLICE	YES	15	0	0.62	1	0.0406	0.2131	EOGT->EGF_domain_specific_O-linked_N-acetylglucosamine_transferase,chr3:69024365-69063112:-,LRRC3B->chr3:26664297-26752267:+,leucine_rich_repeat_containing_3B	NCIH2452_PLEURA	0.62	1	0.2537	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	HOOK3--ADAM32	3	22	HOOK3	2343	chr8:42761401:+	ADAM32	65088	chr8:39091418:+	ONLY_REF_SPLICE	YES	18	5	0.58	0.83	0.0304	0.2232	HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+	NCIH2452_PLEURA	0.58	0.83	0.2536	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	GMDS--C17orf61-PLSCR3	7	1	GMDS	10931	chr6:1930337:-	C17orf61-PLSCR3	24210	chr17:7298409:-	ONLY_REF_SPLICE	YES	17	5	0.32	0.62	0.071	0.0101	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,C17orf61-PLSCR3->chr17:7293053-7307416:-	NCIH2452_PLEURA	0.32	0.62	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	TAF15--MPP2	6	2	TAF15	1122	chr17:34136580:+	MPP2	29437	chr17:41975748:-	ONLY_REF_SPLICE	YES	22	4	0.27	0.67	0.0609	0.0203	TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+,MPP2->chr17:41952725-41987068:-,membrane_palmitoylated_protein_2	NCIH2452_PLEURA	0.27	0.67	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	TBC1D31--KCNB2	5	5	TBC1D31	10556	chr8:124109681:+	KCNB2	35435	chr8:73479877:+	ONLY_REF_SPLICE	YES	17	0	0.37	1	0.0507	0.0507	TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+,KCNB2->chr8:73449626-73850584:+,potassium_voltage-gated_channel_subfamily_B_member_2	NCIH2452_PLEURA	0.37	1	0.1014	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	ASB16-AS1--LRRC46	5	4	ASB16-AS1	1153	chr17:42263933:-	LRRC46	14188	chr17:45914116:+	ONLY_REF_SPLICE	YES	39	3	0.19	0.75	0.0507	0.0406	ASB16-AS1->ASB16_antisense_RNA_1,chr17:42253341-42264085:-,LRRC46->chr17:45908993-45915079:+,leucine_rich_repeat_containing_46	NCIH2452_PLEURA	0.19	0.75	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	SENP5--NCBP2	3	10	SENP5	12743	chr3:196657839:+	NCBP2	21601	chr3:196666303:-	INCL_NON_REF_SPLICE	YES	31	253	0.3	0.05	0.0304	0.1015	LOCAL_INVERSION:+:-:[688],SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	NCIH2452_PLEURA	0.05	0.3	0.1319	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	DPH6-AS1--NRG4	5	0	DPH6-AS1	1279	chr15:35838674:+	NRG4	25328	chr15:76235995:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0507	0	DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,NRG4->chr15:76228310-76352136:-,neuregulin_4	NCIH2452_PLEURA	1	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	SNX11--CABLES1	3	4	SNX11	5977	chr17:46190763:+	CABLES1	28506	chr18:20832924:+	ONLY_REF_SPLICE	YES	139	30	0.05	0.19	0.0304	0.0406	SNX11->chr17:46180719-46200436:+,sorting_nexin_11,CABLES1->Cdk5_and_Abl_enzyme_substrate_1,chr18:20714528-20840431:+	NCIH2452_PLEURA	0.05	0.19	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	SENP5--NCBP2	1	10	SENP5	12675	chr3:196657771:+	NCBP2	21601	chr3:196666303:-	ONLY_REF_SPLICE	YES	27	253	0.29	0.04	0.0101	0.1015	LOCAL_INVERSION:+:-:[688],SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	NCIH2452_PLEURA	0.04	0.29	0.1116	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	NAP1L4--NUP98	3	0	NAP1L4	1124	chr11:3013484:-	NUP98	39193	chr11:3774638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4,NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa	NCIH2452_PLEURA	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	VIM--CALR	3	0	VIM	2412	chr10:17271669:+	CALR	12764	chr19:13049951:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	VIM->chr10:17270258-17279592:+,vimentin,CALR->calreticulin,chr19:13049392-13055303:+	NCIH2452_PLEURA	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	HOOK3--ADAM32	1	7	HOOK3	2343	chr8:42761401:+	ADAM32	67356	chr8:39111933:+	ONLY_REF_SPLICE	YES	18	9	0.31	0.47	0.0101	0.071	HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+	NCIH2452_PLEURA	0.31	0.47	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	GMDS--C17orf61-PLSCR3	2	1	GMDS	8873	chr6:1960101:-	C17orf61-PLSCR3	24210	chr17:7298409:-	ONLY_REF_SPLICE	YES	14	5	0.18	0.38	0.0203	0.0101	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,C17orf61-PLSCR3->chr17:7293053-7307416:-	NCIH2452_PLEURA	0.18	0.38	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	HOOK3--ADAM32	2	1	HOOK3	2343	chr8:42761401:+	ADAM32	69617	chr8:39128395:+	ONLY_REF_SPLICE	YES	18	9	0.14	0.25	0.0203	0.0101	HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+	NCIH2452_PLEURA	0.14	0.25	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	APBB2--UBP1	2	0	APBB2	2423	chr4:41216422:-	UBP1	42862	chr3:33467233:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-,UBP1->chr3:33429828-33482863:-,upstream_binding_protein_1_(LBP-1a)	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	ASPH--CLINT1	2	0	ASPH	35331	chr8:62475303:-	CLINT1	62321	chr5:157216575:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,CLINT1->chr5:157212751-157286183:-,clathrin_interactor_1	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	CAMK2D--RP11-499E18.1	2	0	CAMK2D	5636	chr4:114582869:-	RP11-499E18.1	36959	chr4:103340516:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CAMK2D->Oncogene{Bushman},calcium/calmodulin_dependent_protein_kinase_II_delta,chr4:114372188-114683083:-,RP11-499E18.1->chr4:103339759-103371167:-	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	CNIH3--DEGS1	2	0	CNIH3	3913	chr1:224703578:+	DEGS1	34185	chr1:224380034:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CNIH3->chr1:224622362-224928251:+,cornichon_family_AMPA_receptor_auxiliary_protein_3,DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	CTBP2--RP11-298J20.4	2	0	CTBP2	11531	chr10:126727566:-	RP11-298J20.4	28824	chr10:126631026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_INVERSION:-:+:[44971],CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,RP11-298J20.4->chr10:126605712-126631450:+	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	ENTPD4--UVSSA	2	0	ENTPD4	18819	chr8:23261467:-	UVSSA	25074	chr4:1341878:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4,UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	FGFRL1--GAK	2	0	FGFRL1	3629	chr4:1006352:+	GAK	18109	chr4:898567:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_INVERSION:+:-:[77563],FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	HDAC2--NT5DC1	2	0	HDAC2	2607	chr6:114292021:-	NT5DC1	44678	chr6:116565072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	HNRNPA2B1--SHARPIN	2	0	HNRNPA2B1	1958	chr7:26240192:-	SHARPIN	17874	chr8:145158128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,SHARPIN->SHANK_associated_RH_domain_interactor,chr8:145153536-145163027:-	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	MAML2--CEP57	2	0	MAML2	2798	chr11:96074547:-	CEP57	19069	chr11:95532396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=3;pct=0.03%;dist=Ovary=1,Thyroid=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Urinary_Bladder=1},MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,CEP57->centrosomal_protein_57,chr11:95523129-95565857:+	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	1	0	3	1	TRUE	ACH-000092
NCIH2452_PLEURA	PPP4R1--NDUFV2	2	0	PPP4R1	9044	chr18:9588087:-	NDUFV2	33465	chr18:9117836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	PRR14L--YWHAH	2	0	PRR14L	1148	chr22:32145979:-	YWHAH	28929	chr22:32352126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	PRR14L->chr22:32072242-32146126:-,proline_rich_14_like,YWHAH->chr22:32340447-32353590:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_eta	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	1	0	2	0	TRUE	ACH-000092
NCIH2452_PLEURA	RCC1--TAF6	2	0	RCC1	2175	chr1:28834672:+	TAF6	22734	chr7:99711891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TAF6->TATA-box_binding_protein_associated_factor_6,chr7:99704693-99717464:-	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	1	0	1	1	TRUE	ACH-000092
NCIH2452_PLEURA	SREBF2--SH3PXD2A	2	0	SREBF2	12729	chr22:42281015:+	SH3PXD2A	40493	chr10:105420872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	TAF15--MPP2	2	0	TAF15	1122	chr17:34136580:+	MPP2	31374	chr17:41960723:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+,MPP2->chr17:41952725-41987068:-,membrane_palmitoylated_protein_2	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	WDR35--TUBGCP5	2	0	WDR35	1967	chr2:20188926:-	TUBGCP5	36744	chr15:22835916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	WDR35->WD_repeat_domain_35,chr2:20110021-20189892:-,TUBGCP5->chr15:22833395-22873892:+,tubulin_gamma_complex_associated_protein_5	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	EOGT--LRRC3B	1	2	EOGT	6068	chr3:69056864:-	LRRC3B	28181	chr3:26751004:+	ONLY_REF_SPLICE	NO	49	0	0.06	1	0.0101	0.0203	EOGT->EGF_domain_specific_O-linked_N-acetylglucosamine_transferase,chr3:69024365-69063112:-,LRRC3B->chr3:26664297-26752267:+,leucine_rich_repeat_containing_3B	NCIH2452_PLEURA	0.06	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	CTC-513N18.7--RP11-396F22.1	1	1	CTC-513N18.7	2862	chr19:20828490:-	RP11-396F22.1	9265	chr12:39303112:+	ONLY_REF_SPLICE	YES	0	6	1	0.25	0.0101	0.0101	CTC-513N18.7->chr19:20736598-20844389:-,RP11-396F22.1->chr12:39300253-39303394:+	NCIH2452_PLEURA	0.25	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	HOOK3--ADAM32	1	1	HOOK3	2343	chr8:42761401:+	ADAM32	74204	chr8:39141105:+	ONLY_REF_SPLICE	YES	18	11	0.1	0.15	0.0101	0.0101	HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+	NCIH2452_PLEURA	0.1	0.15	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000092
ONCODG1_OVARY	ABCD3--RP11-148B18.3	465	193	ABCD3	1212	chr1:94884144:+	RP11-148B18.3	30348	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	66	0	0.91	1	4.0502	1.681	LOCAL_REARRANGEMENT:+:[83529],ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+,RP11-148B18.3->chr1:94798823-94800404:+	ONCODG1_OVARY	0.91	1	5.7312	TRUE	0	2	0	2	2	TRUE	ACH-000013
ONCODG1_OVARY	SLC25A44--DAP3	404	85	SLC25A44	1159	chr1:156164038:+	DAP3	17521	chr1:155679564:+	ONLY_REF_SPLICE	YES	33	51	0.94	0.91	3.5189	0.7404	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	ONCODG1_OVARY	0.91	0.94	4.2593	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	GAPVD1--RABEPK	332	121	GAPVD1	1166	chr9:128024238:+	RABEPK	51440	chr9:127990189:+	ONLY_REF_SPLICE	YES	38	86	0.92	0.84	2.8917	1.0539	LOCAL_REARRANGEMENT:+:[27636],GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,RABEPK->Rab9_effector_protein_with_kelch_motifs,chr9:127962821-127996437:+	ONCODG1_OVARY	0.84	0.92	3.9456	TRUE	0	1	0	1	1	TRUE	ACH-000013
ONCODG1_OVARY	MBP--RP11-723G8.2	270	72	MBP	10678	chr18:74778254:-	RP11-723G8.2	43134	chr18:69400083:-	ONLY_REF_SPLICE	YES	40	0	0.9	1	2.3517	0.6271	MBP->chr18:74690783-74845639:-,myelin_basic_protein,RP11-723G8.2->chr18:69399851-69455364:-	ONCODG1_OVARY	0.9	1	2.9788	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	CNN2--ARID3A	226	54	CNN2	4331	chr19:1032695:+	ARID3A	17446	chr19:960092:+	ONLY_REF_SPLICE	YES	578	9	0.33	0.97	1.9685	0.4703	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:+:[50359],CNN2->calponin_2,chr19:1026298-1039068:+,ARID3A->AT-rich_interaction_domain_3A,chr19:925781-975939:+	ONCODG1_OVARY	0.33	0.97	2.4388	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	FCHSD2--FAM168A	218	50	FCHSD2	16460	chr11:72598515:-	FAM168A	29774	chr11:73179537:-	ONLY_REF_SPLICE	YES	41	54	0.87	0.83	1.8988	0.4355	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A	ONCODG1_OVARY	0.83	0.87	2.3343	TRUE	0	1	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	CLIC4--SRRM1	170	72	CLIC4	1269	chr1:25072116:+	SRRM1	34974	chr1:24995614:+	ONLY_REF_SPLICE	YES	275	81	0.47	0.75	1.4807	0.6271	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[72090],CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	ONCODG1_OVARY	0.47	0.75	2.1078	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	GAPVD1--RABEPK	131	141	GAPVD1	3365	chr9:128031263:+	RABEPK	51440	chr9:127990189:+	ONLY_REF_SPLICE	YES	36	86	0.88	0.76	1.141	1.2281	LOCAL_REARRANGEMENT:+:[27636],GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,RABEPK->Rab9_effector_protein_with_kelch_motifs,chr9:127962821-127996437:+	ONCODG1_OVARY	0.76	0.88	2.3691	TRUE	0	1	0	1	1	TRUE	ACH-000013
ONCODG1_OVARY	STARD10--FCHSD2	138	27	STARD10	6569	chr11:72492020:-	FCHSD2	27315	chr11:72613683:-	ONLY_REF_SPLICE	YES	75	57	0.69	0.74	1.202	0.2352	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[43064],STARD10->StAR_related_lipid_transfer_domain_containing_10,chr11:72465774-72504726:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	ONCODG1_OVARY	0.69	0.74	1.4372	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	SLC38A1--COL2A1	124	19	SLC38A1	8733	chr12:46622936:-	COL2A1	51378	chr12:48373845:-	ONLY_REF_SPLICE	YES	281	1	0.34	0.99	1.08	0.1655	SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1,COL2A1->chr12:48366748-48398269:-,collagen_type_II_alpha_1	ONCODG1_OVARY	0.34	0.99	1.2455	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	CCDC6--ANK3	122	23	CCDC6	1535	chr10:61665880:-	ANK3	50361	chr10:61898845:-	ONLY_REF_SPLICE	YES	88	34	0.62	0.81	1.0626	0.2003	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	ONCODG1_OVARY	0.62	0.81	1.2629	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	RAPGEF3--HDAC7	113	20	RAPGEF3	16058	chr12:48134698:-	HDAC7	39387	chr12:48185091:-	ONLY_REF_SPLICE	YES	175	208	0.43	0.39	0.9842	0.1742	LOCAL_REARRANGEMENT:-:[11682],RAPGEF3->Rap_guanine_nucleotide_exchange_factor_3,chr12:48128455-48164823:-,HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7	ONCODG1_OVARY	0.39	0.43	1.1584	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	TSC2--MAPK8IP3	91	1	TSC2	1601	chr16:2098066:+	MAPK8IP3	49511	chr16:1808149:+	ONLY_REF_SPLICE	YES	0	16	1	0.85	0.7926	0.0087	TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2,MAPK8IP3->chr16:1756184-1820318:+,mitogen-activated_protein_kinase_8_interacting_protein_3	ONCODG1_OVARY	0.85	1	0.8013	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	EWSR1--ZNRF3	80	26	EWSR1	4997	chr22:29669853:+	ZNRF3	27691	chr22:29383064:+	ONLY_REF_SPLICE	YES	394	2	0.21	0.98	0.6968	0.2265	EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3	ONCODG1_OVARY	0.21	0.98	0.9233	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	HDAC7--VDR	81	15	HDAC7	8457	chr12:48191891:-	VDR	32992	chr12:48258960:-	ONLY_REF_SPLICE	YES	204	7	0.32	0.93	0.7055	0.1307	LOCAL_REARRANGEMENT:-:[8405],HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7,VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor	ONCODG1_OVARY	0.32	0.93	0.8362	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	NUP98--BEAN1	60	42	NUP98	1393	chr11:3818630:-	BEAN1	50933	chr16:66511463:+	ONLY_REF_SPLICE	YES	64	3	0.61	0.97	0.5226	0.3658	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,BEAN1->brain_expressed,_associated_with_NEDD4,_1,chr16:66461200-66527432:+	ONCODG1_OVARY	0.61	0.97	0.8884	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	AP000769.1--FRMD8	65	1	AP000769.1	1075	chr11:65222802:+	FRMD8	11705	chr11:65167207:+	ONLY_REF_SPLICE	YES	0	21	1	0.76	0.5662	0.0087	LOCAL_REARRANGEMENT:+:[41732],AP000769.1->chr11:65222728-65234028:+,FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	ONCODG1_OVARY	0.76	1	0.5749	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	AGO2--PTK2	57	1	AGO2	1135	chr8:141645584:-	PTK2	81792	chr8:141678523:-	ONLY_REF_SPLICE	YES	0	129	1	0.31	0.4965	0.0087	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[22281],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	ONCODG1_OVARY	0.31	1	0.5052	TRUE	0	2	0	1	2	TRUE	ACH-000013
ONCODG1_OVARY	GAPVD1--RABEPK	26	121	GAPVD1	1167	chr9:128024239:+	RABEPK	51439	chr9:127990188:+	INCL_NON_REF_SPLICE	YES	40	100	0.79	0.6	0.2265	1.0539	LOCAL_REARRANGEMENT:+:[27636],GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,RABEPK->Rab9_effector_protein_with_kelch_motifs,chr9:127962821-127996437:+	ONCODG1_OVARY	0.6	0.79	1.2804	TRUE	0	1	0	1	1	TRUE	ACH-000013
ONCODG1_OVARY	SDC4--KIF24	50	10	SDC4	3286	chr20:43961663:-	KIF24	11709	chr9:34311369:-	ONLY_REF_SPLICE	YES	182	3	0.25	0.95	0.4355	0.0871	SDC4->Oncogene{Bushman},chr20:43953928-43977064:-,syndecan_4,KIF24->chr9:34252379-34329198:-,kinesin_family_member_24	ONCODG1_OVARY	0.25	0.95	0.5226	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	SLC25A44--DAP3	28	87	SLC25A44	1159	chr1:156164038:+	DAP3	16781	chr1:155678824:+	ONLY_REF_SPLICE	YES	33	37	0.78	0.76	0.2439	0.7578	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	ONCODG1_OVARY	0.76	0.78	1.0017	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	C18orf25--HAUS1	40	28	C18orf25	1778	chr18:43754296:+	HAUS1	19434	chr18:43698147:+	ONLY_REF_SPLICE	YES	71	82	0.49	0.45	0.3484	0.2439	LOCAL_REARRANGEMENT:+:[45220],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	ONCODG1_OVARY	0.45	0.49	0.5923	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	BOP1--DGAT1	44	7	BOP1	2339	chr8:145512776:-	DGAT1	18186	chr8:145540772:-	ONLY_REF_SPLICE	YES	81	30	0.39	0.63	0.3832	0.061	LOCAL_REARRANGEMENT:-:[24872],BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,DGAT1->chr8:145539954-145550573:-,diacylglycerol_O-acyltransferase_1	ONCODG1_OVARY	0.39	0.63	0.4442	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	SVIL--MPP7	36	22	SVIL	5350	chr10:29946898:-	MPP7	72068	chr10:28378770:-	ONLY_REF_SPLICE	YES	10	18	0.85	0.76	0.3136	0.1916	SVIL->chr10:29746267-30025710:-,supervillin,MPP7->chr10:28339922-28623415:-,membrane_palmitoylated_protein_7	ONCODG1_OVARY	0.76	0.85	0.5052	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MSI2--RNF123	38	8	MSI2	25423	chr17:55674311:+	RNF123	52083	chr3:49734576:+	ONLY_REF_SPLICE	YES	99	39	0.32	0.54	0.331	0.0697	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,RNF123->chr3:49726932-49758962:+,ring_finger_protein_123	ONCODG1_OVARY	0.32	0.54	0.4007	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	CACHD1--ROR1	35	9	CACHD1	28978	chr1:65145439:+	ROR1	41024	chr1:64516358:+	ONLY_REF_SPLICE	YES	16	2	0.73	0.96	0.3049	0.0784	{Klijn_CCL:Breast=1,Ovary=1},CACHD1->cache_domain_containing_1,chr1:64936428-65158741:+,ROR1->chr1:64239693-64647181:+,receptor_tyrosine_kinase-like_orphan_receptor_1	ONCODG1_OVARY	0.73	0.96	0.3833	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	C18orf25--HAUS1	34	12	C18orf25	1160	chr18:43753678:+	HAUS1	19434	chr18:43698147:+	ONLY_REF_SPLICE	YES	27	82	0.63	0.36	0.2961	0.1045	LOCAL_REARRANGEMENT:+:[45220],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	ONCODG1_OVARY	0.36	0.63	0.4006	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	GAPVD1--RABEPK	5	126	GAPVD1	2316	chr9:128025979:+	RABEPK	51440	chr9:127990189:+	ONLY_REF_SPLICE	YES	37	86	0.78	0.6	0.0436	1.0975	LOCAL_REARRANGEMENT:+:[27636],GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,RABEPK->Rab9_effector_protein_with_kelch_motifs,chr9:127962821-127996437:+	ONCODG1_OVARY	0.6	0.78	1.1411	TRUE	0	1	0	1	1	TRUE	ACH-000013
ONCODG1_OVARY	ITSN2--OTOF	34	4	ITSN2	2475	chr2:24550921:-	OTOF	57921	chr2:26739467:-	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.2961	0.0348	ITSN2->chr2:24425733-24583583:-,intersectin_2,OTOF->Oncogene{Bushman},chr2:26680071-26781566:-,otoferlin	ONCODG1_OVARY	0.93	1	0.3309	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	SPEN--NEU1	33	5	SPEN	24484	chr1:16265371:+	NEU1	30525	chr6:31829227:-	ONLY_REF_SPLICE	YES	89	58	0.3	0.4	0.2874	0.0436	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,NEU1->chr6:31825436-31830683:-,neuraminidase_1_(lysosomal_sialidase)	ONCODG1_OVARY	0.3	0.4	0.331	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	FBXO34--CDKN3	28	10	FBXO34	1235	chr14:55738255:+	CDKN3	14353	chr14:54866612:+	ONLY_REF_SPLICE	YES	0	20	1	0.66	0.2439	0.0871	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	ONCODG1_OVARY	0.66	1	0.331	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	ZNF580--SSC5D	25	2	ZNF580	1100	chr19:56146481:+	SSC5D	10166	chr19:56001665:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2178	0.0174	ZNF580->chr19:56146382-56154835:+,zinc_finger_protein_580,SSC5D->chr19:55999771-56030465:+,scavenger_receptor_cysteine_rich_family_member_with_5_domains	ONCODG1_OVARY	0.96	1	0.2352	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RAB11FIP4--NF1	24	2	RAB11FIP4	6818	chr17:29815290:+	NF1	32870	chr17:29483001:+	ONLY_REF_SPLICE	YES	9	26	0.74	0.5	0.209	0.0174	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[9508],RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	ONCODG1_OVARY	0.5	0.74	0.2264	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-973F15.1--RP11-94A24.1	23	6	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2003	0.0523	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	ONCODG1_OVARY	1	1	0.2526	TRUE	0	2	0	7	2	TRUE	ACH-000013
ONCODG1_OVARY	ZBTB17--SLC22A15	22	4	ZBTB17	2237	chr1:16299534:-	SLC22A15	15148	chr1:116534652:+	ONLY_REF_SPLICE	YES	68	2	0.28	0.93	0.1916	0.0348	ZBTB17->chr1:16268364-16302627:-,zinc_finger_and_BTB_domain_containing_17,SLC22A15->chr1:116519119-116612675:+,solute_carrier_family_22_member_15	ONCODG1_OVARY	0.28	0.93	0.2264	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	SPEN--NEU1	20	3	SPEN	23614	chr1:16264501:+	NEU1	30525	chr6:31829227:-	ONLY_REF_SPLICE	YES	50	58	0.32	0.28	0.1742	0.0261	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,NEU1->chr6:31825436-31830683:-,neuraminidase_1_(lysosomal_sialidase)	ONCODG1_OVARY	0.28	0.32	0.2003	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	GIGYF2--EIF4E2	17	10	GIGYF2	35151	chr2:233675579:+	EIF4E2	68619	chr2:233438703:+	INCL_NON_REF_SPLICE	YES	36	35	0.43	0.44	0.1481	0.0871	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	ONCODG1_OVARY	0.43	0.44	0.2352	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	WNK2--FGD3	19	2	WNK2	19520	chr9:96031028:+	FGD3	45709	chr9:95765207:+	ONLY_REF_SPLICE	YES	25	2	0.46	0.91	0.1655	0.0174	WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+,FGD3->FYVE,_RhoGEF_and_PH_domain_containing_3,chr9:95709733-95798518:+	ONCODG1_OVARY	0.46	0.91	0.1829	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-973F15.1--RP11-96B2.1	18	4	RP11-973F15.1	3763	chr8:123682599:-	RP11-96B2.1	7930	chr8:123499705:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1568	0.0348	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	ONCODG1_OVARY	1	1	0.1916	TRUE	0	2	0	4	2	TRUE	ACH-000013
ONCODG1_OVARY	UBN1--UBALD1	18	4	UBN1	8794	chr16:4911103:+	UBALD1	26627	chr16:4660556:-	ONLY_REF_SPLICE	YES	22	27	0.5	0.45	0.1568	0.0348	UBN1->chr16:4896666-4932361:+,ubinuclein_1,UBALD1->UBA_like_domain_containing_1,chr16:4658884-4665028:-	ONCODG1_OVARY	0.45	0.5	0.1916	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	ZNF580--SSC5D	16	12	ZNF580	1697	chr19:56147078:+	SSC5D	10166	chr19:56001665:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1394	0.1045	ZNF580->chr19:56146382-56154835:+,zinc_finger_protein_580,SSC5D->chr19:55999771-56030465:+,scavenger_receptor_cysteine_rich_family_member_with_5_domains	ONCODG1_OVARY	1	1	0.2439	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	NCAPD3--AP005135.2	17	6	NCAPD3	24410	chr11:134038812:-	AP005135.2	39870	chr11:134931841:-	ONLY_REF_SPLICE	YES	35	0	0.4	1	0.1481	0.0523	NCAPD3->chr11:134020014-134095348:-,non-SMC_condensin_II_complex_subunit_D3,AP005135.2->chr11:134931675-134945793:-	ONCODG1_OVARY	0.4	1	0.2004	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RARG--AAAS	17	3	RARG	5372	chr12:53621146:-	AAAS	18449	chr12:53714476:-	ONLY_REF_SPLICE	YES	55	98	0.27	0.17	0.1481	0.0261	LOCAL_REARRANGEMENT:-:[74476],RARG->Oncogene{Bushman},chr12:53604354-53626764:-,retinoic_acid_receptor_gamma,AAAS->aladin_WD_repeat_nucleoporin,chr12:53701240-53718648:-	ONCODG1_OVARY	0.17	0.27	0.1742	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	EFNA2--OR7G2	16	0	EFNA2	1155	chr19:1286307:+	OR7G2	9191	chr19:9213935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1394	0	EFNA2->chr19:1286153-1301430:+,ephrin_A2,OR7G2->chr19:9212945-9213982:-,olfactory_receptor_family_7_subfamily_G_member_2	ONCODG1_OVARY	1	1	0.1394	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	SLC25A44--DAP3	3	47	SLC25A44	1159	chr1:156164038:+	DAP3	18573	chr1:155686797:+	ONLY_REF_SPLICE	YES	33	224	0.6	0.18	0.0261	0.4094	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	ONCODG1_OVARY	0.18	0.6	0.4355	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	TEX2--PRICKLE2	14	2	TEX2	8557	chr17:62289934:-	PRICKLE2	31716	chr3:64184643:-	ONLY_REF_SPLICE	YES	33	1	0.33	0.94	0.1219	0.0174	TEX2->chr17:62224587-62340661:-,testis_expressed_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	ONCODG1_OVARY	0.33	0.94	0.1393	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	PPFIBP1--SMCO2	13	1	PPFIBP1	1935	chr12:27677298:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	367	0	0.04	1	0.1132	0.0087	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	ONCODG1_OVARY	0.04	1	0.1219	TRUE	0	2	0	3	1	TRUE	ACH-000013
ONCODG1_OVARY	PEF1--RP1-197B17.3	13	0	PEF1	1056	chr1:32110442:-	RP1-197B17.3	15308	chr12:48122670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1132	0	PEF1->chr1:32095463-32110497:-,penta-EF-hand_domain_containing_1,RP1-197B17.3->chr12:48099868-48136077:+	ONCODG1_OVARY	1	1	0.1132	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-534L20.5--EPHA2	11	4	RP11-534L20.5	1422	chr1:206677702:+	EPHA2	18460	chr1:16451485:-	INCL_NON_REF_SPLICE	YES	0	395	1	0.04	0.0958	0.0348	RP11-534L20.5->chr1:206677281-206677789:+,EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-	ONCODG1_OVARY	0.04	1	0.1306	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	TSPAN9--TEAD4	11	2	TSPAN9	2166	chr12:3192885:+	TEAD4	21172	chr12:3103904:+	ONLY_REF_SPLICE	YES	36	67	0.27	0.16	0.0958	0.0174	LOCAL_REARRANGEMENT:+:[36682],TSPAN9->chr12:3186521-3395730:+,tetraspanin_9,TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+	ONCODG1_OVARY	0.16	0.27	0.1132	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	STARD10--FCHSD2	9	8	STARD10	6482	chr11:72492107:-	FCHSD2	27315	chr11:72613683:-	ONLY_REF_SPLICE	YES	49	57	0.26	0.23	0.0784	0.0697	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[43064],STARD10->StAR_related_lipid_transfer_domain_containing_10,chr11:72465774-72504726:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	ONCODG1_OVARY	0.23	0.26	0.1481	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	AP000769.1--FRMD8	10	3	AP000769.1	1325	chr11:65223052:+	FRMD8	11705	chr11:65167207:+	ONLY_REF_SPLICE	YES	1	21	0.93	0.38	0.0871	0.0261	LOCAL_REARRANGEMENT:+:[41732],AP000769.1->chr11:65222728-65234028:+,FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	ONCODG1_OVARY	0.38	0.93	0.1132	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	NT5C2--PCGF6	10	3	NT5C2	3325	chr10:104934615:-	PCGF6	37447	chr10:105063718:-	ONLY_REF_SPLICE	YES	98	32	0.12	0.29	0.0871	0.0261	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},NT5C2->5'-nucleotidase,_cytosolic_II,chr10:104845940-104953056:-,PCGF6->chr10:105062553-105110891:-,polycomb_group_ring_finger_6	ONCODG1_OVARY	0.12	0.29	0.1132	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	UBE2O--RHBDF2	10	2	UBE2O	1482	chr17:74448807:-	RHBDF2	21121	chr17:74483991:-	ONLY_REF_SPLICE	YES	3	27	0.8	0.31	0.0871	0.0174	LOCAL_REARRANGEMENT:-:[17685],UBE2O->chr17:74385532-74449288:-,ubiquitin_conjugating_enzyme_E2_O,RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila)	ONCODG1_OVARY	0.31	0.8	0.1045	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MED9--C17orf76-AS1	10	1	MED9	1280	chr17:17380579:+	C17orf76-AS1	16655	chr17:16373616:+	ONLY_REF_SPLICE	YES	76	14	0.13	0.44	0.0871	0.0087	MED9->chr17:17380300-17396540:+,mediator_complex_subunit_9,C17orf76-AS1->chr17:16342136-16381992:+	ONCODG1_OVARY	0.13	0.44	0.0958	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	NCAPD3--AP005135.2	8	7	NCAPD3	24410	chr11:134038812:-	AP005135.2	38612	chr11:134944265:-	ONLY_REF_SPLICE	YES	35	0	0.3	1	0.0697	0.061	NCAPD3->chr11:134020014-134095348:-,non-SMC_condensin_II_complex_subunit_D3,AP005135.2->chr11:134931675-134945793:-	ONCODG1_OVARY	0.3	1	0.1307	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	CNN2--ARID3A	1	34	CNN2	4298	chr19:1032662:+	ARID3A	17446	chr19:960092:+	ONLY_REF_SPLICE	NO	552	9	0.06	0.8	0.0087	0.2961	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:+:[50359],CNN2->calponin_2,chr19:1026298-1039068:+,ARID3A->AT-rich_interaction_domain_3A,chr19:925781-975939:+	ONCODG1_OVARY	0.06	0.8	0.3048	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	FAR2--MKX	9	2	FAR2	14495	chr12:29464883:+	MKX	32060	chr10:27964483:-	ONLY_REF_SPLICE	YES	25	3	0.31	0.79	0.0784	0.0174	{Klijn_CCL:Ovary=1},FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2,MKX->chr10:27961804-28034989:-,mohawk_homeobox	ONCODG1_OVARY	0.31	0.79	0.0958	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	FBXO34--CDKN3	7	9	FBXO34	1235	chr14:55738255:+	CDKN3	15436	chr14:54868242:+	ONLY_REF_SPLICE	YES	0	207	1	0.07	0.061	0.0784	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	ONCODG1_OVARY	0.07	1	0.1394	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	THAP4--AC114730.8	9	0	THAP4	1509	chr2:242576356:-	AC114730.8	15641	chr2:242674219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0784	0	LOCAL_REARRANGEMENT:-:[97266],THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-,AC114730.8->chr2:242674130-242674913:-	ONCODG1_OVARY	1	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	ZFX--MAP7D2	9	0	ZFX	1622	chrX:24167911:+	MAP7D2	25787	chrX:20082923:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0784	0	ZFX->chrX:24167290-24234372:+,zinc_finger_protein,_X-linked,MAP7D2->MAP7_domain_containing_2,chrX:20024831-20135035:-	ONCODG1_OVARY	1	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	GAPVD1--RABEPK	4	19	GAPVD1	3365	chr9:128031263:+	RABEPK	52590	chr9:127994875:+	ONLY_REF_SPLICE	YES	36	108	0.39	0.18	0.0348	0.1655	LOCAL_REARRANGEMENT:+:[27636],GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,RABEPK->Rab9_effector_protein_with_kelch_motifs,chr9:127962821-127996437:+	ONCODG1_OVARY	0.18	0.39	0.2003	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	FBXO34--CDKN3	6	10	FBXO34	1235	chr14:55738255:+	CDKN3	14358	chr14:54866617:+	INCL_NON_REF_SPLICE	YES	0	20	1	0.44	0.0523	0.0871	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	ONCODG1_OVARY	0.44	1	0.1394	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	CTD-2215E18.1--LNPEP	8	1	CTD-2215E18.1	3466	chr5:96438798:+	LNPEP	22633	chr5:96341777:+	ONLY_REF_SPLICE	YES	1	46	0.9	0.16	0.0697	0.0087	LOCAL_REARRANGEMENT:+:[51560],CTD-2215E18.1->chr5:96424779-96519354:+,LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase	ONCODG1_OVARY	0.16	0.9	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RAB11FIP4--NF1	8	1	RAB11FIP4	4466	chr17:29761140:+	NF1	32870	chr17:29483001:+	ONLY_REF_SPLICE	YES	4	26	0.69	0.26	0.0697	0.0087	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[9508],RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	ONCODG1_OVARY	0.26	0.69	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	C18orf25--HAUS1	1	28	C18orf25	3563	chr18:43796561:+	HAUS1	19434	chr18:43698147:+	ONLY_REF_SPLICE	NO	104	82	0.22	0.26	0.0087	0.2439	LOCAL_REARRANGEMENT:+:[45220],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	ONCODG1_OVARY	0.22	0.26	0.2526	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	CNNM2--GBF1	8	0	CNNM2	2809	chr10:104679858:+	GBF1	52141	chr10:104139278:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0697	0	CNNM2->chr10:104678050-104849978:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_2,GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1	ONCODG1_OVARY	1	1	0.0697	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	FCHSD2--FAM168A	2	24	FCHSD2	16460	chr11:72598515:-	FAM168A	30862	chr11:73141815:-	ONLY_REF_SPLICE	YES	41	41	0.39	0.39	0.0174	0.209	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A	ONCODG1_OVARY	0.39	0.39	0.2264	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	SRP68--ST6GALNAC1	8	0	SRP68	7069	chr17:74056389:-	ST6GALNAC1	25820	chr17:74633818:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0697	0	SRP68->chr17:74035184-74068734:-,signal_recognition_particle_68,ST6GALNAC1->Oncogene{Bushman},ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_1,chr17:74620843-74639920:-	ONCODG1_OVARY	1	1	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	C18orf25--HAUS1	6	7	C18orf25	1778	chr18:43754296:+	HAUS1	20728	chr18:43699892:+	ONLY_REF_SPLICE	YES	71	67	0.15	0.16	0.0523	0.061	LOCAL_REARRANGEMENT:+:[45220],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	ONCODG1_OVARY	0.15	0.16	0.1133	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	STARD10--FCHSD2	5	11	STARD10	6569	chr11:72492020:-	FCHSD2	29483	chr11:72600990:-	ONLY_REF_SPLICE	YES	75	48	0.18	0.25	0.0436	0.0958	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[43064],STARD10->StAR_related_lipid_transfer_domain_containing_10,chr11:72465774-72504726:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	ONCODG1_OVARY	0.18	0.25	0.1394	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	TSC2--MAPK8IP3	7	1	TSC2	1601	chr16:2098066:+	MAPK8IP3	51321	chr16:1809959:+	ONLY_REF_SPLICE	YES	0	16	1	0.33	0.061	0.0087	TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2,MAPK8IP3->chr16:1756184-1820318:+,mitogen-activated_protein_kinase_8_interacting_protein_3	ONCODG1_OVARY	0.33	1	0.0697	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	GAPVD1--RABEPK	3	16	GAPVD1	1166	chr9:128024238:+	RABEPK	52590	chr9:127994875:+	ONLY_REF_SPLICE	YES	38	108	0.33	0.15	0.0261	0.1394	LOCAL_REARRANGEMENT:+:[27636],GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,RABEPK->Rab9_effector_protein_with_kelch_motifs,chr9:127962821-127996437:+	ONCODG1_OVARY	0.15	0.33	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	NCAPD3--AP005135.2	6	3	NCAPD3	23272	chr11:134046202:-	AP005135.2	39870	chr11:134931841:-	ONLY_REF_SPLICE	YES	28	0	0.24	1	0.0523	0.0261	NCAPD3->chr11:134020014-134095348:-,non-SMC_condensin_II_complex_subunit_D3,AP005135.2->chr11:134931675-134945793:-	ONCODG1_OVARY	0.24	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	ATP6V0D2--CTA-392E5.1	6	2	ATP6V0D2	6195	chr8:87111337:+	CTA-392E5.1	21642	chr8:86920542:+	ONLY_REF_SPLICE	YES	19	28	0.3	0.22	0.0523	0.0174	LOCAL_REARRANGEMENT:+:[36240],ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+,CTA-392E5.1->chr8:86851934-86963312:+	ONCODG1_OVARY	0.22	0.3	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	BCS1L--POLR1A	6	2	BCS1L	4916	chr2:219527402:+	POLR1A	20491	chr2:86297395:-	ONLY_REF_SPLICE	YES	56	23	0.12	0.26	0.0523	0.0174	BCS1L->BCS1_homolog,_ubiquinol-cytochrome_c_reductase_complex_chaperone,chr2:219523487-219528166:+,POLR1A->chr2:86247339-86333278:-,polymerase_(RNA)_I_subunit_A	ONCODG1_OVARY	0.12	0.26	0.0697	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	AFAP1--ABLIM2	6	1	AFAP1	1271	chr4:7941383:-	ABLIM2	60984	chr4:7985071:-	ONLY_REF_SPLICE	YES	45	2	0.13	0.78	0.0523	0.0087	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	ONCODG1_OVARY	0.13	0.78	0.061	TRUE	0	1	0	3	1	TRUE	ACH-000013
ONCODG1_OVARY	AFAP1--ABLIM2	6	1	AFAP1	1271	chr4:7941383:-	ABLIM2	59719	chr4:7986620:-	ONLY_REF_SPLICE	YES	45	3	0.13	0.7	0.0523	0.0087	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	ONCODG1_OVARY	0.13	0.7	0.061	TRUE	0	1	0	2	1	TRUE	ACH-000013
ONCODG1_OVARY	FCHSD2--FAM168A	1	21	FCHSD2	15354	chr11:72600874:-	FAM168A	29774	chr11:73179537:-	ONLY_REF_SPLICE	NO	42	54	0.34	0.29	0.0087	0.1829	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A	ONCODG1_OVARY	0.29	0.34	0.1916	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	INTS4--GAB2	6	1	INTS4	30020	chr11:77590034:-	GAB2	44770	chr11:77934722:-	INCL_NON_REF_SPLICE	YES	168	40	0.04	0.15	0.0523	0.0087	Cosmic{samples=2,mutations=2,papers=1},Mitelman{CA_ad=1},INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	ONCODG1_OVARY	0.04	0.15	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	KMT2E--LHFPL3	6	1	KMT2E	14975	chr7:104719410:+	LHFPL3	39671	chr7:104546634:+	ONLY_REF_SPLICE	YES	29	0	0.19	1	0.0523	0.0087	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LHFPL3->chr7:103969104-104549001:+,lipoma_HMGIC_fusion_partner-like_3	ONCODG1_OVARY	0.19	1	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MICU3--MSR1	6	0	MICU3	8118	chr8:16944544:+	MSR1	25828	chr8:16369419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0523	0	MICU3->chr8:16884747-16980153:+,mitochondrial_calcium_uptake_family_member_3,MSR1->chr8:15965387-16424999:-,macrophage_scavenger_receptor_1	ONCODG1_OVARY	1	1	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RP1-90G24.10--SLC5A1	5	2	RP1-90G24.10	2274	chr22:32603263:+	SLC5A1	21166	chr22:32498009:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0436	0.0174	LOCAL_REARRANGEMENT:+:[92086],RP1-90G24.10->chr22:32601102-32665653:+,SLC5A1->chr22:32439019-32509016:+,solute_carrier_family_5_member_1	ONCODG1_OVARY	0.88	1	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	AC007956.1--JDP2	4	5	AC007956.1	1165	chr14:75179636:-	JDP2	9506	chr14:75904601:+	ONLY_REF_SPLICE	YES	35	16	0.2	0.36	0.0348	0.0436	AC007956.1->chr14:75158879-75179800:-,JDP2->Jun_dimerization_protein_2,Oncogene{Bushman},chr14:75894419-75940814:+	ONCODG1_OVARY	0.2	0.36	0.0784	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MYO9A--ZYG11B	5	1	MYO9A	25897	chr15:72226011:-	ZYG11B	71221	chr1:53245525:+	ONLY_REF_SPLICE	YES	9	19	0.4	0.24	0.0436	0.0087	{Klijn_CCL:Ovary=1},MYO9A->chr15:72114632-72410918:-,myosin_IXA,ZYG11B->chr1:53192126-53293014:+,zyg-11_family_member_B,_cell_cycle_regulator	ONCODG1_OVARY	0.24	0.4	0.0523	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	IL1RAPL2--TCEAL3	5	0	IL1RAPL2	1737	chrX:103811732:+	TCEAL3	19300	chrX:102863532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	IL1RAPL2->chrX:103810996-105011822:+,interleukin_1_receptor_accessory_protein_like_2,TCEAL3->chrX:102862379-102884618:+,transcription_elongation_factor_A_like_3	ONCODG1_OVARY	1	1	0.0436	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	INTS4--GAB2	4	4	INTS4	30163	chr11:77589891:-	GAB2	44770	chr11:77934722:-	INCL_NON_REF_SPLICE	YES	28	40	0.22	0.17	0.0348	0.0348	Cosmic{samples=2,mutations=2,papers=1},Mitelman{CA_ad=1},INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	ONCODG1_OVARY	0.17	0.22	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	KLHL35--GDPD5	5	0	KLHL35	6726	chr11:75134736:-	GDPD5	23782	chr11:75173934:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[4011],KLHL35->chr11:75133438-75141674:-,kelch_like_family_member_35,GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5	ONCODG1_OVARY	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	PGS1--AC061992.2	4	4	PGS1	13022	chr17:76415806:+	AC061992.2	22551	chr17:76340046:+	ONLY_REF_SPLICE	YES	211	2	0.04	0.8	0.0348	0.0348	LOCAL_REARRANGEMENT:+:[30842],PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1,AC061992.2->chr17:76311810-76343879:+	ONCODG1_OVARY	0.04	0.8	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	HDAC7--VDR	1	15	HDAC7	18682	chr12:48181495:-	VDR	32992	chr12:48258960:-	ONLY_REF_SPLICE	YES	311	7	0.05	0.7	0.0087	0.1307	LOCAL_REARRANGEMENT:-:[8405],HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7,VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor	ONCODG1_OVARY	0.05	0.7	0.1394	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	AFAP1--ABLIM2	4	2	AFAP1	1271	chr4:7941383:-	ABLIM2	58657	chr4:7994654:-	ONLY_REF_SPLICE	YES	45	1	0.12	0.86	0.0348	0.0174	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	ONCODG1_OVARY	0.12	0.86	0.0522	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	ATP6V0D2--CTA-392E5.1	4	2	ATP6V0D2	7367	chr8:87126109:+	CTA-392E5.1	21642	chr8:86920542:+	ONLY_REF_SPLICE	YES	17	28	0.26	0.18	0.0348	0.0174	LOCAL_REARRANGEMENT:+:[36240],ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+,CTA-392E5.1->chr8:86851934-86963312:+	ONCODG1_OVARY	0.18	0.26	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	FBXO34--CDKN3	3	6	FBXO34	1235	chr14:55738255:+	CDKN3	16673	chr14:54875463:+	ONLY_REF_SPLICE	YES	0	185	1	0.05	0.0261	0.0523	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	ONCODG1_OVARY	0.05	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-973F15.1--RP11-96B2.1	4	2	RP11-973F15.1	1226	chr8:123706120:-	RP11-96B2.1	7930	chr8:123499705:-	ONLY_REF_SPLICE	YES	60	0	0.09	1	0.0348	0.0174	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	ONCODG1_OVARY	0.09	1	0.0522	TRUE	0	8	0	3	8	TRUE	ACH-000013
ONCODG1_OVARY	RBM47--APBB2	3	5	RBM47	2480	chr4:40631413:-	APBB2	40544	chr4:40895428:-	ONLY_REF_SPLICE	YES	27	17	0.23	0.32	0.0261	0.0436	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	ONCODG1_OVARY	0.23	0.32	0.0697	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-17A1.3--GAS2	4	1	RP11-17A1.3	3526	chr11:22859910:+	GAS2	25948	chr11:22833344:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0348	0.0087	LOCAL_REARRANGEMENT:+:[16325],RP11-17A1.3->chr11:22850926-22966939:+,GAS2->chr11:22647188-22834601:+,growth_arrest_specific_2	ONCODG1_OVARY	0.83	1	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	ADRM1--OSBPL2	4	0	ADRM1	1957	chr20:60878105:+	OSBPL2	21595	chr20:60859102:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_REARRANGEMENT:+:[5881],ADRM1->adhesion_regulating_molecule_1,chr20:60877149-60883918:+,OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2	ONCODG1_OVARY	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	ARL16--SLC25A10	4	0	ARL16	1389	chr17:79650566:-	SLC25A10	12649	chr17:79681983:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_INVERSION:-:+,chr17:[19447],ARL16->ADP_ribosylation_factor_like_GTPase_16,chr17:79648204-79650954:-,SLC25A10->chr17:79670401-79687569:+,chr17:79670404-79688042:+,solute_carrier_family_25_member_10	ONCODG1_OVARY	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	DEDD2--PAFAH1B3	3	4	DEDD2	6504	chr19:42713852:-	PAFAH1B3	16791	chr19:42804439:-	ONLY_REF_SPLICE	YES	16	114	0.3	0.06	0.0261	0.0348	LOCAL_REARRANGEMENT:-:[76893],DEDD2->chr19:42702750-42724292:-,death_effector_domain_containing_2,PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3	ONCODG1_OVARY	0.06	0.3	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MED21--STK38L	4	0	MED21	7744	chr12:27199165:+	STK38L	18653	chr12:27450643:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	MED21->chr12:27175479-27219276:+,mediator_complex_subunit_21,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	ONCODG1_OVARY	1	1	0.0348	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	FAR2--MKX	3	2	FAR2	14495	chr12:29464883:+	MKX	31026	chr10:28007525:-	ONLY_REF_SPLICE	YES	25	5	0.17	0.5	0.0261	0.0174	{Klijn_CCL:Ovary=1},FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2,MKX->chr10:27961804-28034989:-,mohawk_homeobox	ONCODG1_OVARY	0.17	0.5	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	SLC3A2--SCGB1A1	3	2	SLC3A2	3261	chr11:62639141:+	SCGB1A1	19773	chr11:62189693:+	ONLY_REF_SPLICE	YES	114	0	0.04	1	0.0261	0.0174	SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,SCGB1A1->chr11:62172575-62190667:+,secretoglobin_family_1A_member_1	ONCODG1_OVARY	0.04	1	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	ARHGAP29--RP11-148B18.4	3	1	ARHGAP29	2276	chr1:94702971:-	RP11-148B18.4	37288	chr1:94790031:-	INCL_NON_REF_SPLICE	YES	99	0	0.04	1	0.0261	0.0087	LOCAL_REARRANGEMENT:-:[43411],ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-,RP11-148B18.4->chr1:94784035-94790125:-	ONCODG1_OVARY	0.04	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	AC005592.2--RNF14	2	4	AC005592.2	3506	chr5:141733148:+	RNF14	25817	chr5:141362945:+	ONLY_REF_SPLICE	YES	2	77	0.75	0.07	0.0174	0.0348	AC005592.2->chr5:141704858-142051566:+,RNF14->chr5:141337893-141369856:+,ring_finger_protein_14	ONCODG1_OVARY	0.07	0.75	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	C18orf25--HAUS1	3	0	C18orf25	1160	chr18:43753678:+	HAUS1	21863	chr18:43702433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_REARRANGEMENT:+:[45220],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	CNN3--ALG14	3	0	CNN3	1441	chr1:95392394:-	ALG14	17538	chr1:95492816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_REARRANGEMENT:-:[47129],CNN3->calponin_3,chr1:95362507-95392834:-,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	ONCODG1_OVARY	1	1	0.0261	TRUE	0	1	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	CNNM2--GBF1	3	0	CNNM2	2809	chr10:104679858:+	GBF1	52473	chr10:104139610:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	CNNM2->chr10:104678050-104849978:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_2,GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	DEDD2--PAFAH1B3	3	0	DEDD2	6504	chr19:42713852:-	PAFAH1B3	18162	chr19:42801517:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_REARRANGEMENT:-:[76893],DEDD2->chr19:42702750-42724292:-,death_effector_domain_containing_2,PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	EPHA2--ARHGEF19	3	0	EPHA2	3978	chr1:16474873:-	ARHGEF19	21586	chr1:16533705:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[41767],EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-,ARHGEF19->Rho_guanine_nucleotide_exchange_factor_19,chr1:16524349-16539104:-	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	KLHL35--GDPD5	3	0	KLHL35	7730	chr11:75133732:-	GDPD5	23782	chr11:75173934:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[4011],KLHL35->chr11:75133438-75141674:-,kelch_like_family_member_35,GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	LINC00635--BBX	3	0	LINC00635	16215	chr3:107567753:-	BBX	49417	chr3:107491475:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_INVERSION:-:+:[28904],LINC00635->chr3:107559075-107600847:-,long_intergenic_non-protein_coding_RNA_635,BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MAP4--CDC25A	3	0	MAP4	1507	chr3:48130263:-	CDC25A	49456	chr3:48209434:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[67867],MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,CDC25A->Oncogene{Bushman},cell_division_cycle_25A,chr3:48198636-48229892:-	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MED21--STK38L	3	0	MED21	7744	chr12:27199165:+	STK38L	17973	chr12:27449963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	MED21->chr12:27175479-27219276:+,mediator_complex_subunit_21,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	NF1--UTP6	3	0	NF1	39979	chr17:29592357:+	UTP6	79090	chr17:30226749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,UTP6->UTP6,_small_subunit_processome_component,chr17:30187923-30228784:-	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	PSAP--SPATA32	3	0	PSAP	10167	chr10:73579494:-	SPATA32	21447	chr17:43332802:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,SPATA32->chr17:43331760-43339479:-,spermatogenesis_associated_32	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	AC007956.1--JDP2	1	7	AC007956.1	2258	chr14:75165467:-	JDP2	9506	chr14:75904601:+	ONLY_REF_SPLICE	YES	39	16	0.17	0.33	0.0087	0.061	AC007956.1->chr14:75158879-75179800:-,JDP2->Jun_dimerization_protein_2,Oncogene{Bushman},chr14:75894419-75940814:+	ONCODG1_OVARY	0.17	0.33	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	C18orf25--HAUS1	2	3	C18orf25	1160	chr18:43753678:+	HAUS1	20728	chr18:43699892:+	ONLY_REF_SPLICE	YES	27	67	0.16	0.07	0.0174	0.0261	LOCAL_REARRANGEMENT:+:[45220],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	ONCODG1_OVARY	0.07	0.16	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	KLHDC10--RP11-306G20.1	2	3	KLHDC10	1300	chr7:129710649:+	RP11-306G20.1	23943	chr7:129648716:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0174	0.0261	LOCAL_REARRANGEMENT:+:[43959],KLHDC10->chr7:129710350-129775560:+,kelch_domain_containing_10,RP11-306G20.1->chr7:129593074-129666391:+	ONCODG1_OVARY	0.83	1	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-973F15.1--RP11-94A24.1	2	3	RP11-973F15.1	2854	chr8:123683508:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	29	0	0.15	1	0.0174	0.0261	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	ONCODG1_OVARY	0.15	1	0.0435	TRUE	0	2	0	7	2	TRUE	ACH-000013
ONCODG1_OVARY	SLC27A1--CTD-2521M24.9	2	3	SLC27A1	2506	chr19:17581516:+	CTD-2521M24.9	20174	chr19:17516886:+	ONLY_REF_SPLICE	YES	8	4	0.38	0.56	0.0174	0.0261	LOCAL_REARRANGEMENT:+:[49865],SLC27A1->Oncogene{Bushman},chr19:17579578-17616977:+,solute_carrier_family_27_member_1,CTD-2521M24.9->chr19:17516503-17529713:+	ONCODG1_OVARY	0.38	0.56	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	EDC4--TSNAXIP1	2	2	EDC4	1321	chr16:67907246:+	TSNAXIP1	16221	chr16:67848205:+	ONLY_REF_SPLICE	NO	14	2	0.22	0.67	0.0174	0.0174	LOCAL_REARRANGEMENT:+:[40875],EDC4->chr16:67906926-67918406:+,enhancer_of_mRNA_decapping_4,TSNAXIP1->chr16:67840668-67866051:+,translin_associated_factor_X_interacting_protein_1	ONCODG1_OVARY	0.22	0.67	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RP1-90G24.10--SLC5A1	2	2	RP1-90G24.10	2274	chr22:32603263:+	SLC5A1	19997	chr22:32495170:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0174	0.0174	LOCAL_REARRANGEMENT:+:[92086],RP1-90G24.10->chr22:32601102-32665653:+,SLC5A1->chr22:32439019-32509016:+,solute_carrier_family_5_member_1	ONCODG1_OVARY	0.8	1	0.0348	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	SVIL--MPP7	1	6	SVIL	5350	chr10:29946898:-	MPP7	73239	chr10:28358781:-	ONLY_REF_SPLICE	YES	10	19	0.41	0.27	0.0087	0.0523	SVIL->chr10:29746267-30025710:-,supervillin,MPP7->chr10:28339922-28623415:-,membrane_palmitoylated_protein_7	ONCODG1_OVARY	0.27	0.41	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	UBE2O--RHBDF2	2	2	UBE2O	1482	chr17:74448807:-	RHBDF2	20898	chr17:74484214:-	ONLY_REF_SPLICE	YES	3	11	0.57	0.27	0.0174	0.0174	LOCAL_REARRANGEMENT:-:[17685],UBE2O->chr17:74385532-74449288:-,ubiquitin_conjugating_enzyme_E2_O,RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila)	ONCODG1_OVARY	0.27	0.57	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	CNNM2--GBF1	2	1	CNNM2	2809	chr10:104679858:+	GBF1	51904	chr10:104139041:+	ONLY_REF_SPLICE	YES	8	82	0.27	0.04	0.0174	0.0087	CNNM2->chr10:104678050-104849978:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_2,GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1	ONCODG1_OVARY	0.04	0.27	0.0261	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	CYTH3--FAM220A	2	1	CYTH3	1171	chr7:6312105:-	FAM220A	22473	chr7:6370866:-	ONLY_REF_SPLICE	NO	42	12	0.07	0.2	0.0174	0.0087	LOCAL_REARRANGEMENT:-:[56765],CYTH3->chr7:6201407-6312275:-,cytohesin_3,FAM220A->chr7:6369040-6388612:-,family_with_sequence_similarity_220_member_A	ONCODG1_OVARY	0.07	0.2	0.0261	TRUE	0	1	0	2	1	TRUE	ACH-000013
ONCODG1_OVARY	ANXA2--NARG2	2	0	ANXA2	11842	chr15:60678227:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	CCDC6--ANK3	2	0	CCDC6	1535	chr10:61665880:-	ANK3	85094	chr10:61802517:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	ONCODG1_OVARY	1	1	0.0174	TRUE	0	3	0	2	3	TRUE	ACH-000013
ONCODG1_OVARY	GIGYF2--EIF4E2	2	0	GIGYF2	34093	chr2:233674521:+	EIF4E2	69968	chr2:233445614:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	GPS1--ASPSCR1	2	0	GPS1	7076	chr17:80014642:+	ASPSCR1	25088	chr17:79966913:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	LOCAL_REARRANGEMENT:+:[33285],GPS1->G_protein_pathway_suppressor_1,chr17:80008567-80015346:+,ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	PGS1--AC061992.2	1	4	PGS1	16340	chr17:76420273:+	AC061992.2	22551	chr17:76340046:+	ONLY_REF_SPLICE	YES	112	2	0.04	0.71	0.0087	0.0348	LOCAL_REARRANGEMENT:+:[30842],PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1,AC061992.2->chr17:76311810-76343879:+	ONCODG1_OVARY	0.04	0.71	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	PPFIBP1--SMCO2	2	0	PPFIBP1	1935	chr12:27677298:+	SMCO2	51223	chr12:27654856:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	ONCODG1_OVARY	1	1	0.0174	TRUE	0	1	0	1	1	TRUE	ACH-000013
ONCODG1_OVARY	RP1-155G6.4--STAU1	2	0	RP1-155G6.4	1185	chr20:47662397:-	STAU1	8932	chr20:47790806:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	LOCAL_REARRANGEMENT:-:[67297],RP1-155G6.4->chr20:47657000-47662581:-,STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	TTYH3--MAD1L1	2	0	TTYH3	1328	chr7:2671912:+	MAD1L1	53732	chr7:1938026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	ONCODG1_OVARY	1	1	0.0174	TRUE	0	6	0	2	1	TRUE	ACH-000013
ONCODG1_OVARY	ZFX--MAP7D2	2	0	ZFX	1622	chrX:24167911:+	MAP7D2	30087	chrX:20071106:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	ZFX->chrX:24167290-24234372:+,zinc_finger_protein,_X-linked,MAP7D2->MAP7_domain_containing_2,chrX:20024831-20135035:-	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	ZFX--MAP7D2	2	0	ZFX	1622	chrX:24167911:+	MAP7D2	34610	chrX:20044070:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	ZFX->chrX:24167290-24234372:+,zinc_finger_protein,_X-linked,MAP7D2->MAP7_domain_containing_2,chrX:20024831-20135035:-	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	UBN1--UBALD1	1	3	UBN1	8794	chr16:4911103:+	UBALD1	27199	chr16:4659984:-	ONLY_REF_SPLICE	NO	22	28	0.15	0.12	0.0087	0.0261	UBN1->chr16:4896666-4932361:+,ubinuclein_1,UBALD1->UBA_like_domain_containing_1,chr16:4658884-4665028:-	ONCODG1_OVARY	0.12	0.15	0.0348	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	AFAP1--ABLIM2	1	2	AFAP1	1271	chr4:7941383:-	ABLIM2	53571	chr4:8010829:-	ONLY_REF_SPLICE	NO	45	6	0.06	0.33	0.0087	0.0174	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	ONCODG1_OVARY	0.06	0.33	0.0261	TRUE	0	1	0	2	1	TRUE	ACH-000013
ONCODG1_OVARY	CPD--CTD-2526M8.2	1	2	CPD	22483	chr17:28783544:+	CTD-2526M8.2	35575	chr18:54837261:-	ONLY_REF_SPLICE	NO	35	0	0.08	1	0.0087	0.0174	CPD->carboxypeptidase_D,chr17:28705923-28797007:+,CTD-2526M8.2->chr18:54836846-54838425:-	ONCODG1_OVARY	0.08	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-973F15.1--RP11-96B2.1	1	2	RP11-973F15.1	1734	chr8:123705612:-	RP11-96B2.1	7930	chr8:123499705:-	ONLY_REF_SPLICE	NO	62	0	0.05	1	0.0087	0.0174	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	ONCODG1_OVARY	0.05	1	0.0261	TRUE	0	8	0	3	8	TRUE	ACH-000013
ONCODG1_OVARY	TMEM117--RP11-210N13.1	1	2	TMEM117	3724	chr12:44338145:+	RP11-210N13.1	18852	chr12:44132149:+	ONLY_REF_SPLICE	YES	14	0	0.18	1	0.0087	0.0174	LOCAL_REARRANGEMENT:+:[94900],TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117,RP11-210N13.1->chr12:44130431-44134870:+	ONCODG1_OVARY	0.18	1	0.0261	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	AFAP1--ABLIM2	1	1	AFAP1	1271	chr4:7941383:-	ABLIM2	60774	chr4:7985281:-	ONLY_REF_SPLICE	YES	45	1	0.04	0.67	0.0087	0.0087	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	ONCODG1_OVARY	0.04	0.67	0.0174	TRUE	0	1	0	3	1	TRUE	ACH-000013
ONCODG1_OVARY	DNAH17--RBFOX3	1	1	DNAH17	23734	chr17:76521091:-	RBFOX3	94993	chr17:77102870:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0087	0.0087	DNAH17->chr17:76419778-76573476:-,dynein_axonemal_heavy_chain_17,RBFOX3->RNA_binding_protein,_fox-1_homolog_3,chr17:77085427-77613550:-	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	HDAC7--VDR	1	1	HDAC7	2933	chr12:48213550:-	VDR	34123	chr12:48251471:-	ONLY_REF_SPLICE	YES	16	9	0.11	0.18	0.0087	0.0087	LOCAL_REARRANGEMENT:-:[8405],HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7,VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor	ONCODG1_OVARY	0.11	0.18	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	HDAC7--VDR	1	1	HDAC7	2933	chr12:48213550:-	VDR	30611	chr12:48276557:-	ONLY_REF_SPLICE	YES	16	4	0.11	0.33	0.0087	0.0087	LOCAL_REARRANGEMENT:-:[8405],HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7,VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor	ONCODG1_OVARY	0.11	0.33	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
HARA_LUNG	TOM1L2--ALDH3A2	874	603	TOM1L2	1161	chr17:17875576:-	ALDH3A2	29385	chr17:19554860:+	ONLY_REF_SPLICE	YES	31	969	0.98	0.6	12.7653	8.8072	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	HARA_LUNG	0.6	0.98	21.5725	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	TOM1L2--ALDH3A2	189	170	TOM1L2	1161	chr17:17875576:-	ALDH3A2	32621	chr17:19559679:+	ONLY_REF_SPLICE	YES	31	1516	0.92	0.19	2.7605	2.4829	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	HARA_LUNG	0.19	0.92	5.2434	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	FRMD6--LINC00640	65	57	FRMD6	1321	chr14:51956138:+	LINC00640	35303	chr14:51800111:+	ONLY_REF_SPLICE	YES	12	0	0.91	1	0.9494	0.8325	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,LINC00640->chr14:51800111-51832275:+,long_intergenic_non-protein_coding_RNA_640	HARA_LUNG	0.91	1	1.7819	TRUE	0	10	0	1	7	TRUE	ACH-000843
HARA_LUNG	TOM1L2--ALDH3A2	16	209	TOM1L2	1161	chr17:17875576:-	ALDH3A2	30385	chr17:19555860:+	ONLY_REF_SPLICE	YES	31	1481	0.88	0.13	0.2337	3.0526	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	HARA_LUNG	0.13	0.88	3.2863	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	TOM1L2--ALDH3A2	5	174	TOM1L2	1161	chr17:17875576:-	ALDH3A2	31534	chr17:19558592:+	INCL_NON_REF_SPLICE	YES	31	1580	0.85	0.1	0.073	2.5414	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	HARA_LUNG	0.1	0.85	2.6144	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	CNGA1--TXK	27	12	CNGA1	1190	chr4:48018500:-	TXK	23801	chr4:48106972:-	ONLY_REF_SPLICE	YES	2	3	0.95	0.93	0.3944	0.1753	LOCAL_REARRANGEMENT:-:[49721],CNGA1->chr4:47937994-48018689:-,cyclic_nucleotide_gated_channel_alpha_1,TXK->TXK_tyrosine_kinase,chr4:48068410-48136273:-	HARA_LUNG	0.93	0.95	0.5697	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	FRMD6--LINC00640	9	63	FRMD6	2445	chr14:51958252:+	LINC00640	35303	chr14:51800111:+	ONLY_REF_SPLICE	YES	10	0	0.88	1	0.1315	0.9202	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,LINC00640->chr14:51800111-51832275:+,long_intergenic_non-protein_coding_RNA_640	HARA_LUNG	0.88	1	1.0517	TRUE	0	2	0	1	2	TRUE	ACH-000843
HARA_LUNG	RNF103--CD8A	21	14	RNF103	10028	chr2:86839282:-	CD8A	22272	chr2:87015683:-	ONLY_REF_SPLICE	YES	36	2	0.49	0.95	0.3067	0.2045	RNF103->chr2:86830516-86850989:-,ring_finger_protein_103,CD8A->CD8a_molecule,chr2:87011729-87035519:-	HARA_LUNG	0.49	0.95	0.5112	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	SRD5A1--NSUN2	17	9	SRD5A1	1527	chr5:6633982:+	NSUN2	25631	chr5:6607497:-	ONLY_REF_SPLICE	YES	22	260	0.54	0.09	0.2483	0.1315	LOCAL_INVERSION:+:-:[52],SRD5A1->chr5:6633456-6669675:+,steroid_5_alpha-reductase_1,NSUN2->NOP2/Sun_RNA_methyltransferase_family_member_2,chr5:6599352-6633404:-	HARA_LUNG	0.09	0.54	0.3798	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	SIK2--POU2AF1	9	4	SIK2	1308	chr11:111473422:+	POU2AF1	29521	chr11:111275447:-	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.1315	0.0584	SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,POU2AF1->Oncogene{Bushman},POU_class_2_associating_factor_1,chr11:111222977-111326355:-	HARA_LUNG	0.87	1	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	RNF103--CD8A	4	15	RNF103	10028	chr2:86839282:-	CD8A	19737	chr2:87018218:-	ONLY_REF_SPLICE	YES	36	3	0.35	0.86	0.0584	0.2191	RNF103->chr2:86830516-86850989:-,ring_finger_protein_103,CD8A->CD8a_molecule,chr2:87011729-87035519:-	HARA_LUNG	0.35	0.86	0.2775	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	FRMD6--LINC00640	3	16	FRMD6	1321	chr14:51956138:+	LINC00640	39214	chr14:51816387:+	ONLY_REF_SPLICE	YES	12	17	0.61	0.53	0.0438	0.2337	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,LINC00640->chr14:51800111-51832275:+,long_intergenic_non-protein_coding_RNA_640	HARA_LUNG	0.53	0.61	0.2775	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	FRMD6--LINC00640	1	22	FRMD6	1321	chr14:51956138:+	LINC00640	36475	chr14:51809001:+	ONLY_REF_SPLICE	NO	12	16	0.66	0.59	0.0146	0.3213	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,LINC00640->chr14:51800111-51832275:+,long_intergenic_non-protein_coding_RNA_640	HARA_LUNG	0.59	0.66	0.3359	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	UNKL--CA5AP1	5	2	UNKL	1906	chr16:1463847:-	CA5AP1	31884	chr16:29647649:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.073	0.0292	UNKL->chr16:1413206-1464752:-,unkempt_family_like_zinc_finger,CA5AP1->carbonic_anhydrase_5A_pseudogene_1,chr16:29630106-29647649:-	HARA_LUNG	0.78	1	0.1022	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	RNF103--CD8A	3	6	RNF103	3346	chr2:86847453:-	CD8A	22272	chr2:87015683:-	ONLY_REF_SPLICE	YES	35	2	0.2	0.82	0.0438	0.0876	RNF103->chr2:86830516-86850989:-,ring_finger_protein_103,CD8A->CD8a_molecule,chr2:87011729-87035519:-	HARA_LUNG	0.2	0.82	0.1314	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	CELSR1--EIF4G3	4	1	CELSR1	42665	chr22:46757470:-	EIF4G3	52568	chr1:21415706:-	INCL_NON_REF_SPLICE	YES	56	4	0.08	0.56	0.0584	0.0146	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	HARA_LUNG	0.08	0.56	0.073	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	CELSR1--EIF4G3	3	2	CELSR1	42665	chr22:46757470:-	EIF4G3	51507	chr1:21437876:-	INCL_NON_REF_SPLICE	YES	56	4	0.08	0.56	0.0438	0.0292	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	HARA_LUNG	0.08	0.56	0.073	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	RNF103--CD8A	1	10	RNF103	10028	chr2:86839282:-	CD8A	23303	chr2:87013094:-	ONLY_REF_SPLICE	YES	36	3	0.23	0.79	0.0146	0.1461	RNF103->chr2:86830516-86850989:-,ring_finger_protein_103,CD8A->CD8a_molecule,chr2:87011729-87035519:-	HARA_LUNG	0.23	0.79	0.1607	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	ERBB4--INTS2	1	7	ERBB4	3912	chr2:212989477:-	INTS2	65807	chr17:59952399:-	ONLY_REF_SPLICE	NO	15	53	0.35	0.13	0.0146	0.1022	ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2	HARA_LUNG	0.13	0.35	0.1168	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	ERBB4--INTS2	2	2	ERBB4	3912	chr2:212989477:-	INTS2	66933	chr17:59949821:-	ONLY_REF_SPLICE	YES	15	61	0.21	0.06	0.0292	0.0292	ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2	HARA_LUNG	0.06	0.21	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0.0146	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	HARA_LUNG	1	1	0.0438	TRUE	0	6	0	7	6	TRUE	ACH-000843
HARA_LUNG	ABR--NCKAP1	2	0	ABR	14871	chr17:994905:-	NCKAP1	56442	chr2:183843643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	AMOTL1--SESN3	2	0	AMOTL1	2302	chr11:94462221:+	SESN3	34947	chr11:94926686:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+,SESN3->chr11:94898704-94965705:-,sestrin_3	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	B4GALT6--DSG2	2	0	B4GALT6	2519	chr18:29264275:-	DSG2	18686	chr18:29098202:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_INVERSION:-:+:[73239],B4GALT6->beta-1,4-galactosyltransferase_6,chr18:29202210-29265799:-,DSG2->Oncogene{Bushman},chr18:29078006-29128971:+,desmoglein_2	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	ERBB4--AC079610.1	2	0	ERBB4	3912	chr2:212989477:-	AC079610.1	50458	chr2:213446132:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[42516],ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,AC079610.1->chr2:213446081-213886269:-	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	2	0	TRUE	ACH-000843
HARA_LUNG	G2E3--SRP54	2	0	G2E3	1150	chr14:31028478:+	SRP54	33444	chr14:35465883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+,SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	RNF121--HSPD1	2	0	RNF121	10131	chr11:71701763:+	HSPD1	26818	chr2:198353971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	RPL30--MTDH	2	0	RPL30	2123	chr8:99057575:-	MTDH	20130	chr8:98725890:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,MTDH->chr8:98656407-98740998:+,metadherin	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	TAOK3--SPATS2	2	0	TAOK3	27294	chr12:118619176:-	SPATS2	60249	chr12:49908338:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	TAOK3->TAO_kinase_3,chr12:118587606-118810750:-,SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0146	0.0146	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	4	0	TRUE	ACH-000843
MELJUSO_SKIN	CTBS--ELAVL4	31	13	CTBS	1242	chr1:85039922:-	ELAVL4	27887	chr1:50659437:+	ONLY_REF_SPLICE	YES	12	0	0.79	1	0.4208	0.1765	CTBS->chitobiase,chr1:85015289-85040163:-,ELAVL4->ELAV_like_neuron-specific_RNA_binding_protein_4,chr1:50513686-50669458:+	MELJUSO_SKIN	0.79	1	0.5973	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	VPS37B--PITPNM2	15	15	VPS37B	5925	chr12:123355437:-	PITPNM2	20171	chr12:123519232:-	ONLY_REF_SPLICE	YES	106	4	0.22	0.88	0.2036	0.2036	LOCAL_REARRANGEMENT:-:[87036],VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2	MELJUSO_SKIN	0.22	0.88	0.4072	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	VPS37B--PITPNM2	9	11	VPS37B	5925	chr12:123355437:-	PITPNM2	20205	chr12:123519198:-	INCL_NON_REF_SPLICE	YES	106	9	0.16	0.69	0.1222	0.1493	LOCAL_REARRANGEMENT:-:[87036],VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2	MELJUSO_SKIN	0.16	0.69	0.2715	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	VPS37B--PITPNM2	7	9	VPS37B	1493	chr12:123380499:-	PITPNM2	20171	chr12:123519232:-	ONLY_REF_SPLICE	YES	158	4	0.09	0.8	0.095	0.1222	LOCAL_REARRANGEMENT:-:[87036],VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2	MELJUSO_SKIN	0.09	0.8	0.2172	TRUE	0	1	0	2	1	TRUE	ACH-000881
MELJUSO_SKIN	VPS37B--PITPNM2	4	7	VPS37B	1493	chr12:123380499:-	PITPNM2	20205	chr12:123519198:-	INCL_NON_REF_SPLICE	YES	158	9	0.07	0.55	0.0543	0.095	LOCAL_REARRANGEMENT:-:[87036],VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2	MELJUSO_SKIN	0.07	0.55	0.1493	TRUE	0	1	0	2	1	TRUE	ACH-000881
MELJUSO_SKIN	C22orf34--BRD1	3	0	C22orf34	1138	chr22:50051053:-	BRD1	33667	chr22:50171461:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	C22orf34->chr22:49808176-50051190:-,chromosome_22_open_reading_frame_34,BRD1->bromodomain_containing_1,chr22:50166931-50221160:-	MELJUSO_SKIN	1	1	0.0407	TRUE	0	0	0	2	0	TRUE	ACH-000881
MELJUSO_SKIN	MAD1L1--C7orf50	3	0	MAD1L1	35008	chr7:1937836:-	C7orf50	52899	chr7:1049779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	MELJUSO_SKIN	1	1	0.0407	TRUE	0	3	0	2	0	TRUE	ACH-000881
MELJUSO_SKIN	PASK--HDLBP	3	0	PASK	18010	chr2:242062147:-	HDLBP	37105	chr2:242207956:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:-:[77000],PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	MELJUSO_SKIN	1	1	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	C22orf34--TBC1D22A	2	1	C22orf34	1138	chr22:50051053:-	TBC1D22A	40141	chr22:47569141:+	ONLY_REF_SPLICE	YES	1	45	0.75	0.06	0.0272	0.0136	C22orf34->chr22:49808176-50051190:-,chromosome_22_open_reading_frame_34,TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+	MELJUSO_SKIN	0.06	0.75	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	C17orf76-AS1--DAG1	2	0	C17orf76-AS1	1593	chr17:16342728:+	DAG1	21282	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	C17orf76-AS1->chr17:16342136-16381992:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MELJUSO_SKIN	1	1	0.0272	TRUE	0	0	0	2	0	TRUE	ACH-000881
MELJUSO_SKIN	C17orf76-AS1--PHF20	2	0	C17orf76-AS1	1593	chr17:16342728:+	PHF20	16671	chr20:34389413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	C17orf76-AS1->chr17:16342136-16381992:+,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	MELJUSO_SKIN	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	C17orf76-AS1--PTCD3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	MELJUSO_SKIN	1	1	0.0272	TRUE	0	3	0	8	0	TRUE	ACH-000881
MELJUSO_SKIN	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	MELJUSO_SKIN	1	1	0.0272	TRUE	0	7	0	19	1	TRUE	ACH-000881
MELJUSO_SKIN	KM-PA-2--CFL1	2	0	KM-PA-2	1054	chr8:145331100:-	CFL1	12970	chr11:65623713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	KM-PA-2->chr8:145317003-145331153:-,CFL1->chr11:65590493-65629497:-,cofilin_1	MELJUSO_SKIN	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	OSBPL5--TSPAN4	2	0	OSBPL5	2524	chr11:3186446:-	TSPAN4	35450	chr11:850288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,TSPAN4->chr11:842808-867116:+,tetraspanin_4	MELJUSO_SKIN	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	RP3-510D11.1--ACOT7	2	0	RP3-510D11.1	3450	chr1:9242066:-	ACOT7	21449	chr1:6355040:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RP3-510D11.1->chr1:9242066-9262678:-,ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	MELJUSO_SKIN	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	TNFRSF12A--PSKH1	2	0	TNFRSF12A	2272	chr16:3070492:+	PSKH1	9379	chr16:67942583:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	TNFRSF12A->chr16:3068446-3072384:+,tumor_necrosis_factor_receptor_superfamily_member_12A,PSKH1->chr16:67927175-67963581:+,protein_serine_kinase_H1	MELJUSO_SKIN	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	TTYH3--MAD1L1	2	0	TTYH3	1328	chr7:2671912:+	MAD1L1	58511	chr7:1855864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	MELJUSO_SKIN	1	1	0.0272	TRUE	0	7	0	2	1	TRUE	ACH-000881
MELJUSO_SKIN	TTYH3--MAD1L1	2	0	TTYH3	10024	chr7:2696168:+	MAD1L1	58511	chr7:1855864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	MELJUSO_SKIN	1	1	0.0272	TRUE	0	1	0	2	0	TRUE	ACH-000881
MELJUSO_SKIN	NFATC1--CTDP1	1	1	NFATC1	4753	chr18:77171501:+	CTDP1	27946	chr18:77455225:+	ONLY_REF_SPLICE	YES	18	6	0.1	0.25	0.0136	0.0136	GTEx_FI:{Blood=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},NFATC1->Oncogene{Bushman},chr18:77155856-77289325:+,nuclear_factor_of_activated_T-cells_1,CTDP1->CTD_phosphatase_subunit_1,chr18:77439801-77514510:+	MELJUSO_SKIN	0.1	0.25	0.0272	TRUE	1	0	0	1	0	TRUE	ACH-000881
ESS1_ENDOMETRIUM	ACTB--MFSD10	3	0	ACTB	4493	chr7:5570155:-	MFSD10	11782	chr4:2935671:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0	ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10	ESS1_ENDOMETRIUM	1	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	ACAD11--DNAJC13	2	0	ACAD11	2121	chr3:132378447:-	DNAJC13	76098	chr3:132244454:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[19106],ACAD11->acyl-CoA_dehydrogenase_family_member_11,chr3:132276982-132379567:-,DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	APIP--PHKB	2	0	APIP	1272	chr11:34937775:-	PHKB	55275	chr16:47722952:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	APIP->APAF1_interacting_protein,chr11:34874641-34938046:-,PHKB->chr16:47495034-47735434:+,phosphorylase_kinase_beta_subunit	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	1	0	1	1	TRUE	ACH-000913
ESS1_ENDOMETRIUM	CPSF6--CEP170	2	0	CPSF6	11046	chr12:69656342:+	CEP170	50648	chr1:243289436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	DOCK6--GABPA	2	0	DOCK6	1085	chr19:11373073:-	GABPA	43026	chr21:27113884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	DOCK6->chr19:11309971-11373157:-,dedicator_of_cytokinesis_6,GABPA->GA_binding_protein_transcription_factor_alpha_subunit,chr21:27106881-27144771:+	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	KLC1--WBP1	2	0	KLC1	13440	chr14:104145855:+	WBP1	26016	chr2:74686124:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,WBP1->WW_domain_binding_protein_1,chr2:74685456-74688018:+	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	NAP1L1--CREM	2	0	NAP1L1	4722	chr12:76462689:-	CREM	43018	chr10:35500584:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	PPP6C--CLIC3	2	0	PPP6C	1296	chr9:127951923:-	CLIC3	15995	chr9:139890209:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	PPP6C->chr9:127908852-127952218:-,protein_phosphatase_6_catalytic_subunit,CLIC3->chloride_intracellular_channel_3,chr9:139889087-139891255:-	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	UBE2E1--TOP2B	2	0	UBE2E1	6001	chr3:23853001:+	TOP2B	16576	chr3:25686946:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,TOP2B->Oncogene{Bushman},chr3:25639475-25706398:-,topoisomerase_(DNA)_II_beta	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	ZMYM2--CCNB1IP1	2	0	ZMYM2	9882	chr13:20593758:+	CCNB1IP1	52688	chr14:20781960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
BICR6_UPPER_AERODIGESTIVE_TRACT	CAMSAP2--DDX59	54	31	CAMSAP2	4915	chr1:200784772:+	DDX59	35617	chr1:200613645:-	ONLY_REF_SPLICE	YES	7	17	0.92	0.83	0.5176	0.2972	LOCAL_INVERSION:+:-:[69589],CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,DDX59->DEAD-box_helicase_59,chr1:200593024-200639097:-	BICR6_UPPER_AERODIGESTIVE_TRACT	0.83	0.92	0.8148	TRUE	0	0	0	1	0	TRUE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	CAMSAP2--DDX59	34	9	CAMSAP2	4915	chr1:200784772:+	DDX59	38542	chr1:200594175:-	ONLY_REF_SPLICE	YES	7	0	0.86	1	0.3259	0.0863	LOCAL_INVERSION:+:-:[69589],CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,DDX59->DEAD-box_helicase_59,chr1:200593024-200639097:-	BICR6_UPPER_AERODIGESTIVE_TRACT	0.86	1	0.4122	TRUE	0	0	0	1	0	TRUE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	CAMSAP2--DDX59	1	31	CAMSAP2	5948	chr1:200797733:+	DDX59	35617	chr1:200613645:-	ONLY_REF_SPLICE	YES	10	17	0.76	0.65	0.0096	0.2972	LOCAL_INVERSION:+:-:[69589],CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,DDX59->DEAD-box_helicase_59,chr1:200593024-200639097:-	BICR6_UPPER_AERODIGESTIVE_TRACT	0.65	0.76	0.3068	TRUE	0	0	0	1	0	TRUE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	CTD-2020K17.4--LRRC37A2	8	2	CTD-2020K17.4	2136	chr17:43325068:-	LRRC37A2	21307	chr17:44627781:+	ONLY_REF_SPLICE	YES	2	9	0.83	0.53	0.0767	0.0192	CTD-2020K17.4->chr17:43322553-43326203:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	BICR6_UPPER_AERODIGESTIVE_TRACT	0.53	0.83	0.0959	TRUE	0	0	0	1	0	TRUE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	CTD-2020K17.4--LRRC37A2	2	2	CTD-2020K17.4	1962	chr17:43325242:-	LRRC37A2	21307	chr17:44627781:+	ONLY_REF_SPLICE	YES	2	9	0.67	0.31	0.0192	0.0192	CTD-2020K17.4->chr17:43322553-43326203:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	BICR6_UPPER_AERODIGESTIVE_TRACT	0.31	0.67	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	RBFOX2--NDUFV2	2	0	RBFOX2	8136	chr22:36205827:-	NDUFV2	35413	chr18:9117836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	RBFOX2->RNA_binding_protein,_fox-1_homolog_2,chr22:36134783-36424473:-,NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	CTD-2020K17.4--LRRC37A2	1	2	CTD-2020K17.4	2452	chr17:43324752:-	LRRC37A2	21307	chr17:44627781:+	ONLY_REF_SPLICE	YES	1	9	0.75	0.25	0.0096	0.0192	CTD-2020K17.4->chr17:43322553-43326203:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	BICR6_UPPER_AERODIGESTIVE_TRACT	0.25	0.75	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000415
RH30_SOFT_TISSUE	MARS--AVIL	1130	254	MARS	9632	chr12:57894305:+	AVIL	23146	chr12:58208009:-	ONLY_REF_SPLICE	YES	1549	2	0.47	1	10.5256	2.3659	{Klijn_CCL:Sarcomatoid=1},MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase,AVIL->advillin,chr12:58191159-58212487:-	RH30_SOFT_TISSUE	0.47	1	12.8915	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	AP000320.7--NPIPB1P	373	178	AP000320.7	1154	chr21:35446045:+	NPIPB1P	12133	chr18:11625982:-	ONLY_REF_SPLICE	YES	105	0	0.84	1	3.4744	1.658	AP000320.7->chr21:35445892-35732332:+,NPIPB1P->chr18:11619508-11639698:-,nuclear_pore_complex_interacting_protein_family_member_B1,_pseudogene	RH30_SOFT_TISSUE	0.84	1	5.1324	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	AVIL--LRP1	248	9	AVIL	11233	chr12:58199648:-	LRP1	79203	chr12:57607010:+	INCL_NON_REF_SPLICE	YES	4	19	0.98	0.93	2.31	0.0838	AVIL->advillin,chr12:58191159-58212487:-,LRP1->LDL_receptor_related_protein_1,chr12:57522276-57607134:+	RH30_SOFT_TISSUE	0.93	0.98	2.3938	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MET--CAV2	114	28	MET	1188	chr7:116312631:+	CAV2	30997	chr7:115928101:+	ONLY_REF_SPLICE	YES	90	0	0.61	1	1.0619	0.2608	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV2->caveolin_2,chr7:115927434-116148595:+	RH30_SOFT_TISSUE	0.61	1	1.3227	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	INVS--HSD17B3	72	36	INVS	4008	chr9:102866909:+	HSD17B3	33150	chr9:99015192:-	ONLY_REF_SPLICE	YES	36	0	0.75	1	0.6707	0.3353	INVS->chr9:102861538-103063282:+,inversin,HSD17B3->chr9:98997588-99064434:-,hydroxysteroid_(17-beta)_dehydrogenase_3	RH30_SOFT_TISSUE	0.75	1	1.006	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--VMP1	63	11	SEPT9	8751	chr17:75316430:+	VMP1	58676	chr17:57895073:+	ONLY_REF_SPLICE	YES	47	82	0.61	0.47	0.5868	0.1025	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RH30_SOFT_TISSUE	0.47	0.61	0.6893	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	PAX3--FOXO1	57	33	PAX3	9270	chr2:223084859:-	FOXO1	18665	chr13:41134997:-	ONLY_REF_SPLICE	YES	5	0	0.95	1	0.5309	0.3074	Cosmic{samples=1159,mutations=380,papers=68},Mitelman{SA_rhabd_alv=2},chimerdb_omim:{alveolarrhabdomyosarcomas},chimerdb_omim:{alveolarrhabdomyosarcoma},chimerdb_omim:{pediatricalveolarrhabdomyosarcoma},chimerdb_pubmed{pediatric cancer alveolar rhabdomyosarcoma,pediatric solid tumor alveolar rhabdomyosarcoma,Rhabdomyosarcomas,rhabdomyosarcoma tumours,Alveolar rhabdomyosarcomas,Rhabdomyosarcoma, alveolar,malignant tumors,Adult cutaneous alveolar rhabdomyosarcoma,alveolar rhabdomyosarcoma (aRMS),alveolar rhabdomyosarcomas (RMS),musclederived tumor alveolar rhabdomyosarcoma,Rhabdomyosarcoma,alveolar rhabdomyosarcomas (ARMSs),alveolar rhabdomyosarcoma,Rhabdomyosarcomas (RMS),alveolar rhabdomyosarcoma tumors (ARMS),Alveolar rhabdomyosarcoma (RMS),alveolar rhabdomyosarcoma (RMS),alveolar Rhabdomyosarcoma (ARMS),alveolar Rhabdomyosarcoma (aRMS),Alveolar rhabdomyosarcoma (ARMS),alveolar rhabdomyosarcoma (ARMS),Embryonal Rhabdomyosarcoma (eRMS),Alveolar rhabdomyosarcoma (aRMS),rhabdomyosarcoma(RMS),rhabdomyosarcoma,human rhabdomyosarcoma,sarcoma,alveolar rhabdomyosarcom,Alveolar rhabdomyosarcoma},{Klijn_CCL:Sarcomatoid=1},PAX3->Oncogene{Bushman},chr2:223064607-223163715:-,paired_box_3,FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1	RH30_SOFT_TISSUE	0.95	1	0.8383	TRUE	0	0	0	2	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	PEMT--IFT20	55	17	PEMT	3889	chr17:17480234:-	IFT20	18603	chr17:26659013:-	ONLY_REF_SPLICE	YES	279	94	0.21	0.43	0.5123	0.1583	PEMT->chr17:17408877-17495022:-,phosphatidylethanolamine_N-methyltransferase,IFT20->chr17:26655352-26662515:-,intraflagellar_transport_20	RH30_SOFT_TISSUE	0.21	0.43	0.6706	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	XRCC2--C8orf76	56	4	XRCC2	1125	chr7:152373126:-	C8orf76	15064	chr8:124250181:-	ONLY_REF_SPLICE	YES	2	70	0.97	0.46	0.5216	0.0373	XRCC2->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_2,chr7:152341864-152373250:-,C8orf76->chr8:124232196-124253638:-,chromosome_8_open_reading_frame_76	RH30_SOFT_TISSUE	0.46	0.97	0.5589	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	AVIL--LRP1	48	26	AVIL	11227	chr12:58199654:-	LRP1	79197	chr12:57607004:+	INCL_NON_REF_SPLICE	YES	4	20	0.95	0.79	0.4471	0.2422	AVIL->advillin,chr12:58191159-58212487:-,LRP1->LDL_receptor_related_protein_1,chr12:57522276-57607134:+	RH30_SOFT_TISSUE	0.79	0.95	0.6893	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	USP32--PTRH2	47	19	USP32	4918	chr17:58422842:-	PTRH2	50711	chr17:57775339:-	ONLY_REF_SPLICE	YES	67	9	0.5	0.88	0.4378	0.177	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	RH30_SOFT_TISSUE	0.5	0.88	0.6148	TRUE	0	0	0	2	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MAD1L1--MROH3P	40	26	MAD1L1	12207	chr7:2252847:-	MROH3P	52490	chr1:200926427:+	INCL_NON_REF_SPLICE	YES	51	0	0.56	1	0.3726	0.2422	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	RH30_SOFT_TISSUE	0.56	1	0.6148	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-491H19.1	36	8	SEPT9	8751	chr17:75316430:+	RP11-491H19.1	48353	chr10:63554223:-	ONLY_REF_SPLICE	YES	47	0	0.48	1	0.3353	0.0745	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-491H19.1->chr10:63541503-63581004:-	RH30_SOFT_TISSUE	0.48	1	0.4098	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	AGAP2--METTL21B	27	9	AGAP2	13033	chr12:58120285:-	METTL21B	22198	chr12:58175121:+	INCL_NON_REF_SPLICE	YES	334	88	0.1	0.29	0.2515	0.0838	LOCAL_INVERSION:-:+:[29335],AGAP2->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_2,Oncogene{Bushman},chr12:58118980-58135940:-,METTL21B->chr12:58165275-58176324:+,methyltransferase_like_21B	RH30_SOFT_TISSUE	0.1	0.29	0.3353	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	GATAD2B--NUP210L	28	4	GATAD2B	1243	chr1:153895209:-	NUP210L	57418	chr1:153967656:-	ONLY_REF_SPLICE	YES	11	0	0.74	1	0.2608	0.0373	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	RH30_SOFT_TISSUE	0.74	1	0.2981	TRUE	0	1	0	1	1	TRUE	ACH-000833
RH30_SOFT_TISSUE	INVS--HSD17B3	16	40	INVS	4008	chr9:102866909:+	HSD17B3	32074	chr9:99017225:-	ONLY_REF_SPLICE	YES	36	0	0.61	1	0.149	0.3726	INVS->chr9:102861538-103063282:+,inversin,HSD17B3->chr9:98997588-99064434:-,hydroxysteroid_(17-beta)_dehydrogenase_3	RH30_SOFT_TISSUE	0.61	1	0.5216	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--VMP1	21	9	SEPT9	6917	chr17:75303279:+	VMP1	58676	chr17:57895073:+	ONLY_REF_SPLICE	YES	22	82	0.58	0.27	0.1956	0.0838	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RH30_SOFT_TISSUE	0.27	0.58	0.2794	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	R3HDM2--RP11-58A17.4	13	3	R3HDM2	2356	chr12:57789532:-	RP11-58A17.4	33110	chr12:58482221:+	ONLY_REF_SPLICE	YES	4	3	0.8	0.84	0.1211	0.0279	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,RP11-58A17.4->chr12:58481675-58487145:+	RH30_SOFT_TISSUE	0.8	0.84	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SRGAP2B--TNFAIP1	12	6	SRGAP2B	4458	chr1:144014093:+	TNFAIP1	11640	chr17:26666434:+	ONLY_REF_SPLICE	YES	85	40	0.17	0.31	0.1118	0.0559	SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+,TNFAIP1->Oncogene{Bushman},TNF_alpha_induced_protein_1,chr17:26662628-26674035:+	RH30_SOFT_TISSUE	0.17	0.31	0.1677	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	TSPAN31--CAPN2	13	0	TSPAN31	8021	chr12:58142200:+	CAPN2	24613	chr1:223943218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1211	0	TSPAN31->chr12:58131796-58143994:+,tetraspanin_31,CAPN2->calpain_2,chr1:223889295-223963720:+	RH30_SOFT_TISSUE	1	1	0.1211	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-491H19.1	10	6	SEPT9	6917	chr17:75303279:+	RP11-491H19.1	48353	chr10:63554223:-	ONLY_REF_SPLICE	YES	22	0	0.42	1	0.0931	0.0559	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-491H19.1->chr10:63541503-63581004:-	RH30_SOFT_TISSUE	0.42	1	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--VMP1	9	10	SEPT9	8206	chr17:75315885:+	VMP1	58676	chr17:57895073:+	ONLY_REF_SPLICE	YES	135	82	0.12	0.19	0.0838	0.0931	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RH30_SOFT_TISSUE	0.12	0.19	0.1769	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-491H19.1	9	7	SEPT9	8206	chr17:75315885:+	RP11-491H19.1	48353	chr10:63554223:-	ONLY_REF_SPLICE	YES	135	0	0.11	1	0.0838	0.0652	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-491H19.1->chr10:63541503-63581004:-	RH30_SOFT_TISSUE	0.11	1	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	PEMT--IFT20	5	18	PEMT	3889	chr17:17480234:-	IFT20	18208	chr17:26659408:-	ONLY_REF_SPLICE	YES	279	113	0.08	0.17	0.0466	0.1677	PEMT->chr17:17408877-17495022:-,phosphatidylethanolamine_N-methyltransferase,IFT20->chr17:26655352-26662515:-,intraflagellar_transport_20	RH30_SOFT_TISSUE	0.08	0.17	0.2143	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	USP32--PTRH2	9	0	USP32	4918	chr17:58422842:-	PTRH2	53562	chr17:57752182:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0838	0	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	RH30_SOFT_TISSUE	1	1	0.0838	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	OSBPL1A--AC074363.1	8	0	OSBPL1A	26247	chr18:21805006:-	AC074363.1	43347	chr2:168346687:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0745	0	OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A,AC074363.1->chr2:168149681-168414843:+	RH30_SOFT_TISSUE	1	1	0.0745	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-63A2.2	7	1	SEPT9	6917	chr17:75303279:+	RP11-63A2.2	46472	chr10:63444914:-	INCL_NON_REF_SPLICE	YES	22	3	0.27	0.73	0.0652	0.0093	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-63A2.2->chr10:63444650-63445146:-	RH30_SOFT_TISSUE	0.27	0.73	0.0745	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-63A2.2	5	9	SEPT9	8751	chr17:75316430:+	RP11-63A2.2	46219	chr10:63445167:-	INCL_NON_REF_SPLICE	YES	47	0	0.23	1	0.0466	0.0838	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-63A2.2->chr10:63444650-63445146:-	RH30_SOFT_TISSUE	0.23	1	0.1304	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MACROD2--GINS1	7	0	MACROD2	21052	chr20:15210707:+	GINS1	48493	chr20:25422338:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0652	0	MACROD2->MACRO_domain_containing_2,chr20:13976015-16033842:+,GINS1->GINS_complex_subunit_1,chr20:25388363-25433264:+	RH30_SOFT_TISSUE	1	1	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	ACACA--MED1	6	3	ACACA	72111	chr17:35453931:-	MED1	86616	chr17:37590573:-	ONLY_REF_SPLICE	YES	93	38	0.09	0.19	0.0559	0.0279	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1	RH30_SOFT_TISSUE	0.09	0.19	0.0838	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	GATAD2B--NUP210L	6	3	GATAD2B	1243	chr1:153895209:-	NUP210L	58523	chr1:153965565:-	ONLY_REF_SPLICE	YES	11	8	0.45	0.53	0.0559	0.0279	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	RH30_SOFT_TISSUE	0.45	0.53	0.0838	TRUE	0	1	0	1	1	TRUE	ACH-000833
RH30_SOFT_TISSUE	INVS--HSD17B3	3	14	INVS	4008	chr9:102866909:+	HSD17B3	34258	chr9:99013767:-	ONLY_REF_SPLICE	YES	36	3	0.32	0.85	0.0279	0.1304	INVS->chr9:102861538-103063282:+,inversin,HSD17B3->chr9:98997588-99064434:-,hydroxysteroid_(17-beta)_dehydrogenase_3	RH30_SOFT_TISSUE	0.32	0.85	0.1583	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	XRCC2--C8orf76	6	2	XRCC2	1125	chr7:152373126:-	C8orf76	16208	chr8:124243997:-	ONLY_REF_SPLICE	YES	2	40	0.8	0.17	0.0559	0.0186	XRCC2->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_2,chr7:152341864-152373250:-,C8orf76->chr8:124232196-124253638:-,chromosome_8_open_reading_frame_76	RH30_SOFT_TISSUE	0.17	0.8	0.0745	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	FOXO1--PAX3	6	0	FOXO1	2015	chr13:41239720:-	PAX3	21556	chr2:223066909:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0559	0	chimerdb_omim:{alveolarrhabdomyosarcomas},chimerdb_omim:{alveolarrhabdomyosarcoma},chimerdb_omim:{pediatricalveolarrhabdomyosarcoma},{Klijn_CCL:Sarcomatoid=1},FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,PAX3->Oncogene{Bushman},chr2:223064607-223163715:-,paired_box_3	RH30_SOFT_TISSUE	1	1	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	USP32--PTRH2	1	20	USP32	4918	chr17:58422842:-	PTRH2	48500	chr17:57777550:-	ONLY_REF_SPLICE	YES	67	2	0.24	0.91	0.0093	0.1863	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	RH30_SOFT_TISSUE	0.24	0.91	0.1956	TRUE	0	0	0	2	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-63A2.2	4	7	SEPT9	8751	chr17:75316430:+	RP11-63A2.2	46472	chr10:63444914:-	INCL_NON_REF_SPLICE	YES	47	3	0.19	0.79	0.0373	0.0652	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-63A2.2->chr10:63444650-63445146:-	RH30_SOFT_TISSUE	0.19	0.79	0.1025	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	INVS--HSD17B3	4	5	INVS	4008	chr9:102866909:+	HSD17B3	38028	chr9:99007708:-	ONLY_REF_SPLICE	YES	36	22	0.2	0.29	0.0373	0.0466	INVS->chr9:102861538-103063282:+,inversin,HSD17B3->chr9:98997588-99064434:-,hydroxysteroid_(17-beta)_dehydrogenase_3	RH30_SOFT_TISSUE	0.2	0.29	0.0839	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MET--CAV2	1	15	MET	1188	chr7:116312631:+	CAV2	32065	chr7:115929906:+	ONLY_REF_SPLICE	YES	90	0	0.15	1	0.0093	0.1397	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV2->caveolin_2,chr7:115927434-116148595:+	RH30_SOFT_TISSUE	0.15	1	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-491H19.1	3	5	SEPT9	4441	chr17:75284292:+	RP11-491H19.1	48353	chr10:63554223:-	ONLY_REF_SPLICE	YES	38	0	0.17	1	0.0279	0.0466	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-491H19.1->chr10:63541503-63581004:-	RH30_SOFT_TISSUE	0.17	1	0.0745	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--VMP1	1	13	SEPT9	10953	chr17:75319893:+	VMP1	58676	chr17:57895073:+	ONLY_REF_SPLICE	YES	58	82	0.19	0.15	0.0093	0.1211	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RH30_SOFT_TISSUE	0.15	0.19	0.1304	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	TBC1D22A--MACROD2	4	1	TBC1D22A	14474	chr22:47308084:+	MACROD2	46124	chr20:15210586:+	ONLY_REF_SPLICE	YES	72	0	0.06	1	0.0373	0.0093	TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,MACROD2->MACRO_domain_containing_2,chr20:13976015-16033842:+	RH30_SOFT_TISSUE	0.06	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	XRCC2--C8orf76	4	0	XRCC2	1125	chr7:152373126:-	C8orf76	17666	chr8:124238872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	XRCC2->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_2,chr7:152341864-152373250:-,C8orf76->chr8:124232196-124253638:-,chromosome_8_open_reading_frame_76	RH30_SOFT_TISSUE	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	TBC1D22A--SLCO3A1	2	5	TBC1D22A	13359	chr22:47290742:+	SLCO3A1	30273	chr15:92459223:+	ONLY_REF_SPLICE	YES	56	21	0.11	0.25	0.0186	0.0466	TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	RH30_SOFT_TISSUE	0.11	0.25	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	LDLRAD3--TRIM44	3	0	LDLRAD3	1164	chr11:35965694:+	TRIM44	19552	chr11:35706807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	YOSHIHARA_TCGA_num_samples[LUAD:1|SKCM:1],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44	RH30_SOFT_TISSUE	1	1	0.0279	TRUE	0	0	0	2	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	PAX3--FOXO1	3	0	PAX3	4967	chr2:223158886:-	FOXO1	18665	chr13:41134997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	Cosmic{samples=1159,mutations=380,papers=68},Mitelman{SA_rhabd_alv=2},chimerdb_omim:{alveolarrhabdomyosarcomas},chimerdb_omim:{alveolarrhabdomyosarcoma},chimerdb_omim:{pediatricalveolarrhabdomyosarcoma},chimerdb_pubmed{pediatric cancer alveolar rhabdomyosarcoma,pediatric solid tumor alveolar rhabdomyosarcoma,Rhabdomyosarcomas,rhabdomyosarcoma tumours,Alveolar rhabdomyosarcomas,Rhabdomyosarcoma, alveolar,malignant tumors,Adult cutaneous alveolar rhabdomyosarcoma,alveolar rhabdomyosarcoma (aRMS),alveolar rhabdomyosarcomas (RMS),musclederived tumor alveolar rhabdomyosarcoma,Rhabdomyosarcoma,alveolar rhabdomyosarcomas (ARMSs),alveolar rhabdomyosarcoma,Rhabdomyosarcomas (RMS),alveolar rhabdomyosarcoma tumors (ARMS),Alveolar rhabdomyosarcoma (RMS),alveolar rhabdomyosarcoma (RMS),alveolar Rhabdomyosarcoma (ARMS),alveolar Rhabdomyosarcoma (aRMS),Alveolar rhabdomyosarcoma (ARMS),alveolar rhabdomyosarcoma (ARMS),Embryonal Rhabdomyosarcoma (eRMS),Alveolar rhabdomyosarcoma (aRMS),rhabdomyosarcoma(RMS),rhabdomyosarcoma,human rhabdomyosarcoma,sarcoma,alveolar rhabdomyosarcom,Alveolar rhabdomyosarcoma},{Klijn_CCL:Sarcomatoid=1},PAX3->Oncogene{Bushman},chr2:223064607-223163715:-,paired_box_3,FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1	RH30_SOFT_TISSUE	1	1	0.0279	TRUE	0	0	0	2	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-491H19.1	3	0	SEPT9	8751	chr17:75316430:+	RP11-491H19.1	49468	chr10:63542163:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-491H19.1->chr10:63541503-63581004:-	RH30_SOFT_TISSUE	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	BSG--C9orf3	2	0	BSG	2405	chr19:572701:+	C9orf3	50258	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	1	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	CLYBL--SFPQ	2	0	CLYBL	1093	chr13:100259011:+	SFPQ	34092	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	GATAD2B--NUP210L	1	4	GATAD2B	1243	chr1:153895209:-	NUP210L	56213	chr1:153973536:-	ONLY_REF_SPLICE	NO	11	0	0.31	1	0.0093	0.0373	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	RH30_SOFT_TISSUE	0.31	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	GNA12--RNPC3	2	0	GNA12	4638	chr7:2834562:-	RNPC3	33491	chr1:104097656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GTEx_FI:{Pituitary=[count:1=pct:1.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=6;pct=0.07%;dist=Brain_-_Putamen_(basal_ganglia)=1,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1,Colon_-_Transverse=1},GNA12->G_protein_subunit_alpha_12,Oncogene{Bushman},chr7:2767746-2883958:-,RNPC3->RNA_binding_region_(RNP1,_RRM)_containing_3,chr1:104068313-104097861:+	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	1	0	1	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	LONP1--NOTCH3	2	0	LONP1	9018	chr19:5708353:-	NOTCH3	38139	chr19:15285211:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	LONP1->chr19:5691845-5720583:-,lon_peptidase_1,_mitochondrial,NOTCH3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:15270444-15311792:-,notch_3	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MED13L--FBXW8	2	0	MED13L	1279	chr12:116714865:-	FBXW8	52306	chr12:117448128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,FBXW8->F-box_and_WD_repeat_domain_containing_8,chr12:117348761-117468953:+	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MEF2A--LRRC28	2	0	MEF2A	2764	chr15:100106309:+	LRRC28	38528	chr15:99874128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=3;pct=0.03%;dist=Ovary=1,Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},LOCAL_REARRANGEMENT:+:[86436],MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	R3HDM2--RP11-58A17.4	2	0	R3HDM2	1286	chr12:57824503:-	RP11-58A17.4	32880	chr12:58481991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,RP11-58A17.4->chr12:58481675-58487145:+	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	RBM10--TAF9	2	0	RBM10	2759	chrX:47006897:+	TAF9	21797	chr5:68662422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	RBM10->ArcherDX_panel,FoundationOne_panel,RNA_binding_motif_protein_10,chrX:47004268-47046212:+,TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SLC39A7--PHF1	2	0	SLC39A7	1494	chr6:33168715:+	PHF1	12290	chr6:33382502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	SLC39A7->chr6:33168222-33172216:+,solute_carrier_family_39_member_7,PHF1->PHD_finger_protein_1,chr6:33378176-33384230:+	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	UBE2K--RPS2	2	0	UBE2K	1347	chr4:39700010:+	RPS2	16399	chr16:2013257:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	ZZZ3--PIGK	2	0	ZZZ3	1158	chr1:78148947:-	PIGK	34642	chr1:77588044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3,PIGK->chr1:77554675-77685115:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_K	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	1	0	2	1	TRUE	ACH-000833
RH30_SOFT_TISSUE	GATAD2B--NUP210L	1	3	GATAD2B	1243	chr1:153895209:-	NUP210L	58677	chr1:153965411:-	ONLY_REF_SPLICE	NO	11	8	0.27	0.33	0.0093	0.0279	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	RH30_SOFT_TISSUE	0.27	0.33	0.0372	TRUE	0	1	0	1	1	TRUE	ACH-000833
RH30_SOFT_TISSUE	R3HDM2--RP11-58A17.4	1	3	R3HDM2	2356	chr12:57789532:-	RP11-58A17.4	32880	chr12:58481991:+	ONLY_REF_SPLICE	NO	4	2	0.5	0.67	0.0093	0.0279	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,RP11-58A17.4->chr12:58481675-58487145:+	RH30_SOFT_TISSUE	0.5	0.67	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	EFCAB4B--RP11-264F23.3	1	1	EFCAB4B	3710	chr12:3842108:-	RP11-264F23.3	38619	chr12:4358359:-	ONLY_REF_SPLICE	YES	21	0	0.09	1	0.0093	0.0093	EFCAB4B->chr12:3715799-3873985:-,RP11-264F23.3->chr12:4357931-4385350:-	RH30_SOFT_TISSUE	0.09	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
LCLC97TM1_LUNG	CRTC1--TMEM59L	106	55	CRTC1	1152	chr19:18794638:+	TMEM59L	26995	chr19:18724682:+	ONLY_REF_SPLICE	YES	16	5	0.91	0.97	1.5053	0.781	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[62638],CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,TMEM59L->chr19:18718240-18731849:+,transmembrane_protein_59_like	LCLC97TM1_LUNG	0.91	0.97	2.2863	TRUE	0	0	0	1	0	TRUE	ACH-000596
LCLC97TM1_LUNG	CRTC1--TMEM59L	3	56	CRTC1	1152	chr19:18794638:+	TMEM59L	25974	chr19:18723661:+	ONLY_REF_SPLICE	YES	16	0	0.79	1	0.0426	0.7953	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[62638],CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,TMEM59L->chr19:18718240-18731849:+,transmembrane_protein_59_like	LCLC97TM1_LUNG	0.79	1	0.8379	TRUE	0	0	0	1	0	TRUE	ACH-000596
LCLC97TM1_LUNG	FBXL20--C17orf104	4	1	FBXL20	3225	chr17:37499433:-	C17orf104	23504	chr17:42734495:+	ONLY_REF_SPLICE	YES	7	2	0.42	0.71	0.0568	0.0142	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,C17orf104->chr17:42733762-42767676:+	LCLC97TM1_LUNG	0.42	0.71	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000596
LCLC97TM1_LUNG	CRTC1--TMEM59L	2	8	CRTC1	1152	chr19:18794638:+	TMEM59L	28319	chr19:18726785:+	ONLY_REF_SPLICE	YES	16	51	0.38	0.16	0.0284	0.1136	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[62638],CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,TMEM59L->chr19:18718240-18731849:+,transmembrane_protein_59_like	LCLC97TM1_LUNG	0.16	0.38	0.142	TRUE	0	0	0	1	0	TRUE	ACH-000596
LCLC97TM1_LUNG	CRTC1--TMEM59L	3	2	CRTC1	1152	chr19:18794638:+	TMEM59L	30499	chr19:18728965:+	ONLY_REF_SPLICE	YES	16	56	0.24	0.08	0.0426	0.0284	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[62638],CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,TMEM59L->chr19:18718240-18731849:+,transmembrane_protein_59_like	LCLC97TM1_LUNG	0.08	0.24	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000596
LCLC97TM1_LUNG	CRTC1--TMEM59L	2	3	CRTC1	1152	chr19:18794638:+	TMEM59L	29344	chr19:18727810:+	ONLY_REF_SPLICE	YES	16	51	0.24	0.09	0.0284	0.0426	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[62638],CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,TMEM59L->chr19:18718240-18731849:+,transmembrane_protein_59_like	LCLC97TM1_LUNG	0.09	0.24	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000596
KYSE30_OESOPHAGUS	UCK2--SELL	103	72	UCK2	1402	chr1:165797169:+	SELL	21576	chr1:169679658:-	ONLY_REF_SPLICE	YES	27	4	0.87	0.98	1.1675	0.8161	{Klijn_CCL:Head-Neck=1},UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,SELL->chr1:169659808-169680839:-,selectin_L	KYSE30_OESOPHAGUS	0.87	0.98	1.9836	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	ACTB--NAB1	51	0	ACTB	7370	chr7:5567278:-	NAB1	16378	chr2:191523856:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5781	0	ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,NAB1->NGFI-A_binding_protein_1,chr2:191511472-191557492:+	KYSE30_OESOPHAGUS	1	1	0.5781	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	AC074286.1--SEPP1	38	18	AC074286.1	1119	chr2:178257301:-	SEPP1	25895	chr5:42808468:-	ONLY_REF_SPLICE	YES	3	7	0.95	0.89	0.4307	0.204	AC074286.1->chr2:178148236-178257419:-,SEPP1->chr5:42799982-42887494:-,selenoprotein_P,_plasma,_1	KYSE30_OESOPHAGUS	0.89	0.95	0.6347	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	POFUT2--PTCH2	23	8	POFUT2	6936	chr21:46696932:-	PTCH2	20776	chr1:45295433:-	ONLY_REF_SPLICE	YES	87	7	0.26	0.82	0.2607	0.0907	POFUT2->chr21:46683843-46707813:-,protein_O-fucosyltransferase_2,PTCH2->Oncogene{Bushman},chr1:45285516-45308735:-,patched_2	KYSE30_OESOPHAGUS	0.26	0.82	0.3514	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	LSAMP-AS1--CREBL2	16	0	LSAMP-AS1	1070	chr3:116078940:+	CREBL2	9125	chr12:12788711:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1814	0	LSAMP-AS1->LSAMP_antisense_RNA_1,chr3:116078871-116088937:+,CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+	KYSE30_OESOPHAGUS	1	1	0.1814	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	MRPL33--SLC4A1AP	9	10	MRPL33	5678	chr2:28005561:+	SLC4A1AP	20493	chr2:27905115:+	ONLY_REF_SPLICE	YES	2	92	0.9	0.17	0.102	0.1134	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[76744],MRPL33->chr2:27994584-28210954:+,mitochondrial_ribosomal_protein_L33,SLC4A1AP->chr2:27886338-27917840:+,solute_carrier_family_4_member_1_adaptor_protein	KYSE30_OESOPHAGUS	0.17	0.9	0.2154	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	FLVCR1--CDC42BPA	10	5	FLVCR1	10124	chr1:213061936:+	CDC42BPA	39682	chr1:227268718:-	ONLY_REF_SPLICE	YES	21	21	0.42	0.42	0.1134	0.0567	{Klijn_CCL:Head-Neck=1},FLVCR1->chr1:213031597-213072705:+,feline_leukemia_virus_subgroup_C_cellular_receptor_1,CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-	KYSE30_OESOPHAGUS	0.42	0.42	0.1701	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	MRPL33--SLC4A1AP	11	0	MRPL33	1976	chr2:27995559:+	SLC4A1AP	20493	chr2:27905115:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1247	0	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[76744],MRPL33->chr2:27994584-28210954:+,mitochondrial_ribosomal_protein_L33,SLC4A1AP->chr2:27886338-27917840:+,solute_carrier_family_4_member_1_adaptor_protein	KYSE30_OESOPHAGUS	1	1	0.1247	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	FAT2--USP10	7	13	FAT2	29665	chr5:150897181:-	USP10	45722	chr16:84767041:+	ONLY_REF_SPLICE	YES	22	130	0.48	0.13	0.0793	0.1474	FAT2->FAT_atypical_cadherin_2,Oncogene{Bushman},chr5:150883654-150948505:-,USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10	KYSE30_OESOPHAGUS	0.13	0.48	0.2267	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	ACOT7--PLEKHG5	8	4	ACOT7	4593	chr1:6420630:-	PLEKHG5	32301	chr1:6535198:-	ONLY_REF_SPLICE	YES	204	29	0.06	0.29	0.0907	0.0453	LOCAL_REARRANGEMENT:-:[71701],ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-,PLEKHG5->chr1:6526152-6580121:-,pleckstrin_homology_and_RhoGEF_domain_containing_G5	KYSE30_OESOPHAGUS	0.06	0.29	0.136	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	CEP170--RYR2	4	4	CEP170	21060	chr1:243327586:-	RYR2	144602	chr1:237954729:+	ONLY_REF_SPLICE	YES	13	0	0.38	1	0.0453	0.0453	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	KYSE30_OESOPHAGUS	0.38	1	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	IQCE--MAP7D1	5	0	IQCE	28934	chr7:2650770:+	MAP7D1	36263	chr1:36621910:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+,MAP7D1->MAP7_domain_containing_1,chr1:36621180-36646450:+	KYSE30_OESOPHAGUS	1	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	PHF15--MCL1	5	0	PHF15	20337	chr5:133914447:+	MCL1	30058	chr1:150549817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	PHF15->chr5:133860003-133918918:+,MCL1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:150547032-150552066:-,myeloid_cell_leukemia_1	KYSE30_OESOPHAGUS	1	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	CEP170--RYR2	3	4	CEP170	21060	chr1:243327586:-	RYR2	145278	chr1:237955405:+	ONLY_REF_SPLICE	YES	13	1	0.35	0.88	0.034	0.0453	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	KYSE30_OESOPHAGUS	0.35	0.88	0.0793	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	AP003900.6--AC008132.1	1	7	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	4	2	0.67	0.8	0.0113	0.0793	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KYSE30_OESOPHAGUS	0.67	0.8	0.0906	TRUE	0	0	0	11	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	MYH10--LINC01052	2	3	MYH10	4889	chr17:8492399:-	LINC01052	49077	chr13:66449839:+	ONLY_REF_SPLICE	YES	30	0	0.14	1	0.0227	0.034	MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle,LINC01052->chr13:66440306-66452351:+,long_intergenic_non-protein_coding_RNA_1052	KYSE30_OESOPHAGUS	0.14	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	MYH10--LINC01052	2	3	MYH10	4889	chr17:8492399:-	LINC01052	50140	chr13:66451989:+	ONLY_REF_SPLICE	YES	30	0	0.14	1	0.0227	0.034	MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle,LINC01052->chr13:66440306-66452351:+,long_intergenic_non-protein_coding_RNA_1052	KYSE30_OESOPHAGUS	0.14	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	ATF3--PWWP2B	2	0	ATF3	2411	chr1:212782272:+	PWWP2B	13073	chr10:134218130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ATF3->Oncogene{Bushman},activating_transcription_factor_3,chr1:212738676-212794119:+,PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	CCDC64B--EEF1A1	2	0	CCDC64B	1033	chr16:3086895:-	EEF1A1	14877	chr6:74229779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CCDC64B->chr16:3077683-3086927:-,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	CDKN1A--EEF1A1	2	0	CDKN1A	3054	chr6:36646575:+	EEF1A1	15905	chr6:74229779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1},CDKN1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:36644305-36655116:+,cyclin-dependent_kinase_inhibitor_1A,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	1	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	CFL1--FOSL1	2	0	CFL1	4089	chr11:65625568:-	FOSL1	17279	chr11:65664477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:-:[30023],CFL1->chr11:65590493-65629497:-,cofilin_1,FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	NCK2--PER1	2	0	NCK2	1242	chr2:106361595:+	PER1	15933	chr17:8054163:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+,PER1->Oncogene{Bushman},chr17:8043790-8059824:-,period_circadian_clock_1	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	NDFIP2--RBM26	2	0	NDFIP2	5948	chr13:80113910:+	RBM26	37852	chr13:79908565:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:+:-:[74675],NDFIP2->Nedd4_family_interacting_protein_2,chr13:80055287-80130210:+,RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	RORC--GOSR1	2	0	RORC	7267	chr1:151787389:-	GOSR1	20192	chr17:28808161:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RORC->Oncogene{Bushman},RAR_related_orphan_receptor_C,chr1:151778547-151804348:-,GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	SEP15--HS2ST1	2	0	SEP15	1397	chr1:87379711:-	HS2ST1	15816	chr1:87538617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_INVERSION:-:+:[224],SEP15->chr1:87328132-87380107:-,HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	ZNF696--ZBTB2	2	0	ZNF696	4390	chr8:144375235:+	ZBTB2	12450	chr6:151694784:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	HGNC_GENEFAM,PROTCLUST,ZNF696->chr8:144371846-144380231:+,zinc_finger_protein_696,ZBTB2->ArcherDX_panel,FoundationOne_panel,chr6:151685252-151712683:-,zinc_finger_and_BTB_domain_containing_2	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	CTD-2033A16.3--CLEC18A	1	2	CTD-2033A16.3	1163	chr16:69761078:+	CLEC18A	9020	chr16:69988237:+	ONLY_REF_SPLICE	NO	12	1	0.2	0.75	0.0113	0.0227	CTD-2033A16.3->chr16:69760916-69776466:+,CLEC18A->C-type_lectin_domain_family_18_member_A,chr16:69984810-69998141:+	KYSE30_OESOPHAGUS	0.2	0.75	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	LSM10--RBM27	1	1	LSM10	4071	chr1:36857959:-	RBM27	14683	chr5:145613013:+	ONLY_REF_SPLICE	YES	2	53	0.5	0.04	0.0113	0.0113	LSM10->LSM10,_U7_small_nuclear_RNA_associated,chr1:36856839-36863493:-,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	KYSE30_OESOPHAGUS	0.04	0.5	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000777
NCIH1838_LUNG	NFIC--HADHB	135	21	NFIC	9118	chr19:3435205:+	HADHB	28324	chr2:26477115:+	ONLY_REF_SPLICE	YES	24	5	0.87	0.97	1.1725	0.1824	NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C,HADHB->chr2:26466038-26513336:+,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_beta_subunit	NCIH1838_LUNG	0.87	0.97	1.3549	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	UBAP2--TOM1	74	3	UBAP2	10919	chr9:33986758:-	TOM1	43996	chr22:35723264:+	ONLY_REF_SPLICE	YES	27	40	0.74	0.66	0.6427	0.0261	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,TOM1->chr22:35695268-35743985:+,target_of_myb1_membrane_trafficking_protein	NCIH1838_LUNG	0.66	0.74	0.6688	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	SPIDR--DDX11L2	51	21	SPIDR	13881	chr8:48320523:+	DDX11L2	40010	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	25	0	0.74	1	0.4429	0.1824	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	NCIH1838_LUNG	0.74	1	0.6253	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	GALNT7--CTD-2012I17.1	41	11	GALNT7	1209	chr4:174090112:+	CTD-2012I17.1	23798	chr4:135710386:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.3561	0.0955	GALNT7->chr4:174089904-174245118:+,polypeptide_N-acetylgalactosaminyltransferase_7,CTD-2012I17.1->chr4:135680554-135738444:+	NCIH1838_LUNG	0.98	1	0.4516	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	RNF121--NARS2	31	19	RNF121	3604	chr11:71671937:+	NARS2	31288	chr11:78152163:-	ONLY_REF_SPLICE	YES	80	59	0.38	0.46	0.2692	0.165	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	NCIH1838_LUNG	0.38	0.46	0.4342	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	LAMTOR1--P2RY2	31	7	LAMTOR1	4264	chr11:71809335:-	P2RY2	12511	chr11:72939026:+	ONLY_REF_SPLICE	YES	295	30	0.11	0.56	0.2692	0.0608	LAMTOR1->chr11:71796941-71814433:-,late_endosomal/lysosomal_adaptor,_MAPK_and_MTOR_activator_1,P2RY2->chr11:72929343-72947397:+,purinergic_receptor_P2Y2	NCIH1838_LUNG	0.11	0.56	0.33	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	PCMT1--LATS1	17	8	PCMT1	5894	chr6:150094305:+	LATS1	21217	chr6:150016357:-	ONLY_REF_SPLICE	YES	217	12	0.1	0.68	0.1476	0.0695	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[31187],PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase,LATS1->Oncogene{Bushman},chr6:149979289-150039392:-,large_tumor_suppressor_kinase_1	NCIH1838_LUNG	0.1	0.68	0.2171	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	NARS2--FCHSD2	17	6	NARS2	7420	chr11:78270585:-	FCHSD2	23219	chr11:72794785:-	ONLY_REF_SPLICE	YES	56	13	0.29	0.64	0.1476	0.0521	NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	NCIH1838_LUNG	0.29	0.64	0.1997	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	ZBTB24--KCTD1	17	2	ZBTB24	5652	chr6:109796602:-	KCTD1	17888	chr18:24161693:-	ONLY_REF_SPLICE	YES	9	0	0.68	1	0.1476	0.0174	ZBTB24->chr6:109783797-109804440:-,zinc_finger_and_BTB_domain_containing_24,KCTD1->chr18:24034874-24237365:-,potassium_channel_tetramerization_domain_containing_1	NCIH1838_LUNG	0.68	1	0.165	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	KSR1--CDH12P3	15	2	KSR1	15576	chr17:25915561:+	CDH12P3	39015	chr5:69428506:+	ONLY_REF_SPLICE	YES	9	0	0.65	1	0.1303	0.0174	KSR1->Oncogene{Bushman},chr17:25783670-25953461:+,kinase_suppressor_of_ras_1,CDH12P3->cadherin_12_pseudogene_3,chr5:69428506-69428800:+	NCIH1838_LUNG	0.65	1	0.1477	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	LIN52--SAMD4A	14	4	LIN52	3937	chr14:74562688:+	SAMD4A	25782	chr14:55168780:+	ONLY_REF_SPLICE	YES	32	110	0.36	0.14	0.1216	0.0347	LIN52->chr14:74551499-74667936:+,lin-52_DREAM_MuvB_core_complex_component,SAMD4A->chr14:55033815-55260033:+,sterile_alpha_motif_domain_containing_4A	NCIH1838_LUNG	0.14	0.36	0.1563	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	SPIDR--DDX11L2	10	2	SPIDR	13881	chr8:48320523:+	DDX11L2	40613	chr2:114358403:-	ONLY_REF_SPLICE	YES	25	1	0.32	0.92	0.0869	0.0174	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	NCIH1838_LUNG	0.32	0.92	0.1043	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	RP11-59N23.3--CMAS	6	3	RP11-59N23.3	2631	chr12:21913019:+	CMAS	6999	chr12:22208083:+	INCL_NON_REF_SPLICE	YES	0	137	1	0.06	0.0521	0.0261	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH1838_LUNG	0.06	1	0.0782	TRUE	0	0	0	3	0	TRUE	ACH-000733
NCIH1838_LUNG	RP11-59N23.3--CMAS	6	2	RP11-59N23.3	1459	chr12:21815705:+	CMAS	6999	chr12:22208083:+	ONLY_REF_SPLICE	YES	7	137	0.53	0.06	0.0521	0.0174	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH1838_LUNG	0.06	0.53	0.0695	TRUE	0	14	5	5	10	TRUE	ACH-000733
NCIH1838_LUNG	KANK1--TOM1	6	1	KANK1	6781	chr9:504754:+	TOM1	38368	chr22:35723264:+	ONLY_REF_SPLICE	YES	0	40	1	0.15	0.0521	0.0087	KANK1->KN_motif_and_ankyrin_repeat_domains_1,chr9:470291-746105:+,TOM1->chr22:35695268-35743985:+,target_of_myb1_membrane_trafficking_protein	NCIH1838_LUNG	0.15	1	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	RNF121--NARS2	1	19	RNF121	4742	chr11:71673335:+	NARS2	31288	chr11:78152163:-	ONLY_REF_SPLICE	YES	82	59	0.2	0.25	0.0087	0.165	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	NCIH1838_LUNG	0.2	0.25	0.1737	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	KANK1--UBAP2	5	2	KANK1	8933	chr9:540667:+	UBAP2	40824	chr9:33986835:-	ONLY_REF_SPLICE	YES	2	29	0.78	0.19	0.0434	0.0174	KANK1->KN_motif_and_ankyrin_repeat_domains_1,chr9:470291-746105:+,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	NCIH1838_LUNG	0.19	0.78	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	RNF121--NARS2	2	13	RNF121	3604	chr11:71671937:+	NARS2	32315	chr11:78147860:-	ONLY_REF_SPLICE	YES	80	49	0.16	0.23	0.0174	0.1129	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	NCIH1838_LUNG	0.16	0.23	0.1303	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	KANK1--UBAP2	5	0	KANK1	6781	chr9:504754:+	UBAP2	40824	chr9:33986835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0434	0	KANK1->KN_motif_and_ankyrin_repeat_domains_1,chr9:470291-746105:+,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	NCIH1838_LUNG	1	1	0.0434	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	AKAP6--NPAS3	4	1	AKAP6	16800	chr14:33069998:+	NPAS3	40321	chr14:33525111:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0347	0.0087	AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+,NPAS3->chr14:33404139-34273382:+,neuronal_PAS_domain_protein_3	NCIH1838_LUNG	0.83	1	0.0434	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	RNF121--NARS2	1	13	RNF121	4742	chr11:71673335:+	NARS2	32315	chr11:78147860:-	ONLY_REF_SPLICE	YES	82	49	0.15	0.22	0.0087	0.1129	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	NCIH1838_LUNG	0.15	0.22	0.1216	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	SPIDR--DDX11L2	3	5	SPIDR	12780	chr8:48309186:+	DDX11L2	40010	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	27	0	0.23	1	0.0261	0.0434	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	NCIH1838_LUNG	0.23	1	0.0695	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	HNRNPA2B1--LMNA	3	0	HNRNPA2B1	5961	chr7:26236189:-	LMNA	30340	chr1:156106180:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,LMNA->chr1:156052364-156109880:+,lamin_A/C	NCIH1838_LUNG	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	SPIDR--DDX11L2	3	0	SPIDR	7740	chr8:48206619:+	DDX11L2	40613	chr2:114358403:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	NCIH1838_LUNG	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	NARS2--FCHSD2	1	6	NARS2	6339	chr11:78277178:-	FCHSD2	23219	chr11:72794785:-	ONLY_REF_SPLICE	YES	46	13	0.13	0.35	0.0087	0.0521	NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	NCIH1838_LUNG	0.13	0.35	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	AKAP6--NPAS3	2	1	AKAP6	18902	chr14:33097304:+	NPAS3	40321	chr14:33525111:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0174	0.0087	AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+,NPAS3->chr14:33404139-34273382:+,neuronal_PAS_domain_protein_3	NCIH1838_LUNG	0.75	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	ADORA2B--UBB	2	0	ADORA2B	1667	chr17:15848897:+	UBB	8656	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	NCIH1838_LUNG	1	1	0.0174	TRUE	0	1	0	5	1	TRUE	ACH-000733
NCIH1838_LUNG	AP000769.1--INTS4	2	0	AP000769.1	1325	chr11:65223052:+	INTS4	22341	chr11:77633517:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	AP000769.1->chr11:65222728-65234028:+,INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4	NCIH1838_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	EIF4G1--KDM2A	2	0	EIF4G1	9078	chr3:184040742:+	KDM2A	47900	chr11:67021674:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	EIF4G1->Oncogene{Bushman},chr3:184032283-184053146:+,eukaryotic_translation_initiation_factor_4_gamma_1,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	NCIH1838_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	PNPLA8--CBX1	2	0	PNPLA8	4961	chr7:108161920:-	CBX1	26117	chr17:46154403:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	PNPLA8->chr7:108110866-108210110:-,patatin_like_phospholipase_domain_containing_8,CBX1->chr17:46147414-46178883:-,chromobox_1	NCIH1838_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	PSPH--PSMG3	2	0	PSPH	1467	chr7:56118831:-	PSMG3	16874	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	NCIH1838_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000733
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZKSCAN1--RSBN1L	42	0	ZKSCAN1	14374	chr7:99636870:+	RSBN1L	33099	chr7:77411238:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3504	0	ZKSCAN1->chr7:99613204-99639312:+,zinc_finger_with_KRAB_and_SCAN_domains_1,RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3504	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF7--CTD-2410N18.5	3	0	TCF7	2323	chr5:133451724:+	CTD-2410N18.5	20410	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_INVERSION:+:-:[15305],TCF7->chr5:133450402-133487556:+,transcription_factor_7_(T-cell_specific,_HMG-box),CTD-2410N18.5->chr5:133502861-133561762:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.025	TRUE	0	2	0	4	1	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4G2--ABCB10	2	0	EIF4G2	7081	chr11:10824577:-	ABCB10	18823	chr1:229683448:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2,ABCB10->ATP_binding_cassette_subfamily_B_member_10,Oncogene{Bushman},chr1:229652329-229694442:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FZR1--MAP2K2	2	0	FZR1	1202	chr19:3506472:+	MAP2K2	19349	chr19:4110653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	FZR1->chr19:3506271-3538328:+,fizzy/cell_division_cycle_20_related_1,MAP2K2->ArcherDX_panel,FoundationOne_panel,chr19:4090319-4124126:-,mitogen-activated_protein_kinase_kinase_2	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAX--FUT8	2	0	MAX	3258	chr14:65560426:-	FUT8	17766	chr14:65922339:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	MAX->MYC_associated_factor_X,Oncogene{Bushman},chr14:65472892-65569413:-,FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTBP2--SEP15	2	0	PTBP2	5162	chr1:97217056:+	SEP15	32155	chr1:87346408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,SEP15->chr1:87328132-87380107:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--PAIP2	2	0	RCC1	2920	chr1:28835417:+	PAIP2	24030	chr5:138704422:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF126--BSG	2	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	2	0	12	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRNP35--RILPL2	2	0	SNRNP35	1576	chr12:123942763:+	RILPL2	14468	chr12:123915206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},LOCAL_INVERSION:+:-:[20924],SNRNP35->chr12:123942188-123957701:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_35,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTN-AS1--FAM168B	2	0	TTN-AS1	8946	chr2:179396305:+	FAM168B	68270	chr2:131813268:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	TTN-AS1->TTN_antisense_RNA_1,chr2:179385910-179639402:+,FAM168B->chr2:131805449-131851033:-,family_with_sequence_similarity_168_member_B	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VPS13B--SRSF11	2	0	VPS13B	18031	chr8:100205285:+	SRSF11	81650	chr1:70687298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR37--GET4	2	0	WDR37	2669	chr10:1102908:+	GET4	29112	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WIPF1--ATF2	2	0	WIPF1	1143	chr2:175547502:-	ATF2	42872	chr2:175962321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	WIPF1->WAS/WASL_interacting_protein_family_member_1,chr2:175424300-175547644:-,ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP4B1--CEPT1	1	1	AP4B1	1597	chr1:114447227:-	CEPT1	16759	chr1:111690264:+	ONLY_REF_SPLICE	YES	30	1	0.06	0.67	0.0083	0.0083	AP4B1->adaptor_related_protein_complex_4_beta_1_subunit,chr1:114437370-114447823:-,CEPT1->choline/ethanolamine_phosphotransferase_1,chr1:111682249-111727724:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.67	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF736--FAM120B	1	1	ZNF736	8361	chr7:63797360:+	FAM120B	32723	chr6:170704575:+	ONLY_REF_SPLICE	YES	30	38	0.06	0.05	0.0083	0.0083	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lymphoid=1,Lung=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.06	0.0166	TRUE	0	3	0	3	3	TRUE	ACH-000372
SNU308_BILIARY_TRACT	BTBD8--RP11-148B18.3	133	64	BTBD8	2614	chr1:92554452:+	RP11-148B18.3	13413	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	12	0	0.94	1	1.3228	0.6365	BTBD8->BTB_domain_containing_8,chr1:92545862-92613393:+,RP11-148B18.3->chr1:94798823-94800404:+	SNU308_BILIARY_TRACT	0.94	1	1.9593	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	130	2	LITAF	6541	chr16:11680742:-	BCAR4	24573	chr16:11914154:-	ONLY_REF_SPLICE	YES	11	25	0.92	0.84	1.293	0.0199	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	0.84	0.92	1.3129	TRUE	0	10	0	1	10	TRUE	ACH-000141
SNU308_BILIARY_TRACT	BTBD8--RP11-148B18.3	60	34	BTBD8	1416	chr1:92546277:+	RP11-148B18.3	13413	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	75	0	0.56	1	0.5968	0.3382	BTBD8->BTB_domain_containing_8,chr1:92545862-92613393:+,RP11-148B18.3->chr1:94798823-94800404:+	SNU308_BILIARY_TRACT	0.56	1	0.935	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--ZC3H7A	50	0	LITAF	6541	chr16:11680742:-	ZC3H7A	23409	chr16:11876244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4973	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	SNU308_BILIARY_TRACT	1	1	0.4973	TRUE	0	3	0	1	3	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-421L21.3--LPPR5	22	23	RP11-421L21.3	1184	chr1:101491617:+	LPPR5	15247	chr1:99470179:-	INCL_NON_REF_SPLICE	YES	89	1	0.34	0.98	0.2188	0.2288	RP11-421L21.3->chr1:101491434-101552821:+,LPPR5->chr1:99355806-99470588:-	SNU308_BILIARY_TRACT	0.34	0.98	0.4476	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP5-896L10.1--DPH5	20	13	RP5-896L10.1	1348	chr1:99470179:+	DPH5	8572	chr1:101491617:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1989	0.1293	RP5-896L10.1->chr1:99469832-99614408:+,DPH5->chr1:101455179-101491644:-,diphthamide_biosynthesis_5	SNU308_BILIARY_TRACT	0.97	1	0.3282	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	ZFYVE28--FAM193A	18	11	ZFYVE28	5035	chr4:2355660:-	FAM193A	34766	chr4:2648412:+	ONLY_REF_SPLICE	YES	22	11	0.57	0.72	0.179	0.1094	ZFYVE28->chr4:2271309-2420390:-,zinc_finger_FYVE-type_containing_28,FAM193A->chr4:2626988-2734292:+,family_with_sequence_similarity_193_member_A	SNU308_BILIARY_TRACT	0.57	0.72	0.2884	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	18	4	LITAF	6541	chr16:11680742:-	BCAR4	23451	chr16:11915612:-	ONLY_REF_SPLICE	YES	11	0	0.67	1	0.179	0.0398	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	0.67	1	0.2188	TRUE	0	8	0	1	8	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	10	0	LITAF	6276	chr16:11681007:-	BCAR4	24573	chr16:11914154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0995	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	1	1	0.0995	TRUE	0	10	0	1	10	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-421L21.3--LPPR5	4	24	RP11-421L21.3	4825	chr1:101541272:+	LPPR5	15247	chr1:99470179:-	INCL_NON_REF_SPLICE	YES	66	1	0.3	0.97	0.0398	0.2387	RP11-421L21.3->chr1:101491434-101552821:+,LPPR5->chr1:99355806-99470588:-	SNU308_BILIARY_TRACT	0.3	0.97	0.2785	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--ZC3H7A	8	0	LITAF	6089	chr16:11681194:-	ZC3H7A	23409	chr16:11876244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0796	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	SNU308_BILIARY_TRACT	1	1	0.0796	TRUE	0	3	0	1	3	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-421L21.3--LPPR5	3	9	RP11-421L21.3	1184	chr1:101491617:+	LPPR5	17853	chr1:99422297:-	ONLY_REF_SPLICE	YES	89	8	0.12	0.6	0.0298	0.0895	RP11-421L21.3->chr1:101491434-101552821:+,LPPR5->chr1:99355806-99470588:-	SNU308_BILIARY_TRACT	0.12	0.6	0.1193	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-421L21.3--LPPR5	2	9	RP11-421L21.3	4825	chr1:101541272:+	LPPR5	17853	chr1:99422297:-	ONLY_REF_SPLICE	YES	66	8	0.14	0.58	0.0199	0.0895	RP11-421L21.3->chr1:101491434-101552821:+,LPPR5->chr1:99355806-99470588:-	SNU308_BILIARY_TRACT	0.14	0.58	0.1094	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	4	0	LITAF	6089	chr16:11681194:-	BCAR4	23451	chr16:11915612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0398	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	1	1	0.0398	TRUE	0	8	0	1	8	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--ZC3H7A	4	0	LITAF	6276	chr16:11681007:-	ZC3H7A	23409	chr16:11876244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0398	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	SNU308_BILIARY_TRACT	1	1	0.0398	TRUE	0	3	0	1	3	TRUE	ACH-000141
SNU308_BILIARY_TRACT	BTBD8--RP11-148B18.3	3	2	BTBD8	1166	chr1:92546027:+	RP11-148B18.3	13413	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	16	0	0.24	1	0.0298	0.0199	BTBD8->BTB_domain_containing_8,chr1:92545862-92613393:+,RP11-148B18.3->chr1:94798823-94800404:+	SNU308_BILIARY_TRACT	0.24	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	3	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0298	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	0.57	1	0.0397	TRUE	0	6	0	7	6	TRUE	ACH-000141
SNU308_BILIARY_TRACT	CPD--XXbac-B476C20.17	3	0	CPD	3986	chr17:28712254:+	XXbac-B476C20.17	35683	chr22:18518526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	CPD->carboxypeptidase_D,chr17:28705923-28797007:+,XXbac-B476C20.17->chr22:18512151-18520734:+	SNU308_BILIARY_TRACT	1	1	0.0298	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	2	4	LITAF	8424	chr16:11678046:-	BCAR4	24573	chr16:11914154:-	ONLY_REF_SPLICE	YES	37	25	0.14	0.19	0.0199	0.0398	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	0.14	0.19	0.0597	TRUE	0	2	0	1	2	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	3	0	LITAF	6089	chr16:11681194:-	BCAR4	24573	chr16:11914154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	1	1	0.0298	TRUE	0	10	0	1	10	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0199	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	0.5	1	0.0298	TRUE	0	2	0	5	2	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0199	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	0.75	1	0.0298	TRUE	0	1	0	3	1	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0199	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	0.5	1	0.0298	TRUE	0	0	0	4	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	C16orf74--HN1L	2	0	C16orf74	2250	chr16:85768796:-	HN1L	13704	chr16:1735440:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	C16orf74->chr16:85723690-85784735:-,chromosome_16_open_reading_frame_74,HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like	SNU308_BILIARY_TRACT	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	GPC1--ALDH3A1	2	0	GPC1	11372	chr2:241404163:+	ALDH3A1	26869	chr17:19641548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GPC1->chr2:241375088-241407493:+,glypican_1,ALDH3A1->aldehyde_dehydrogenase_3_family_member_A1,chr17:19641297-19652256:-	SNU308_BILIARY_TRACT	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	1	4	LITAF	7281	chr16:11680002:-	BCAR4	23451	chr16:11915612:-	ONLY_REF_SPLICE	YES	34	0	0.13	1	0.0099	0.0398	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	0.13	1	0.0497	TRUE	0	7	0	1	7	TRUE	ACH-000141
SNU308_BILIARY_TRACT	NAPG--VAPA	2	0	NAPG	1254	chr18:10526155:+	VAPA	21938	chr18:9931807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	NAPG->NSF_attachment_protein_gamma,chr18:10525902-10552758:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	SNU308_BILIARY_TRACT	1	1	0.0199	TRUE	0	1	0	2	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-421L21.3--ZNRF1	2	0	RP11-421L21.3	1184	chr1:101491617:+	ZNRF1	20606	chr16:75127470:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	RP11-421L21.3->chr1:101491434-101552821:+,ZNRF1->chr16:75032928-75144892:+,zinc_and_ring_finger_1,_E3_ubiquitin_protein_ligase	SNU308_BILIARY_TRACT	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	1	2	LITAF	7281	chr16:11680002:-	BCAR4	24573	chr16:11914154:-	ONLY_REF_SPLICE	YES	34	25	0.08	0.11	0.0099	0.0199	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	0.08	0.11	0.0298	TRUE	0	10	0	1	10	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0099	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	1	1	0.0198	TRUE	0	4	1	7	4	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0099	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	1	1	0.0198	TRUE	0	10	0	4	10	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0099	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	0.67	1	0.0198	TRUE	0	6	0	6	6	TRUE	ACH-000141
TOV112D_OVARY	CEP112--SFTPC	3	0	CEP112	36142	chr17:63685247:-	SFTPC	48938	chr8:22019289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,SFTPC->chr8:22014426-22021992:+,surfactant_protein_C	TOV112D_OVARY	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	PARD3--RP11-342D11.2	3	0	PARD3	2552	chr10:34985246:-	RP11-342D11.2	38435	chr10:33502166:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,RP11-342D11.2->chr10:33500205-33502732:+	TOV112D_OVARY	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	ATL2--HNRNPLL	2	0	ATL2	1143	chr2:38604285:-	HNRNPLL	32959	chr2:38800569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	TOV112D_OVARY	1	1	0.0225	TRUE	0	1	0	2	1	TRUE	ACH-000048
TOV112D_OVARY	CD99L2--MTMR1	2	0	CD99L2	7181	chrX:149983335:-	MTMR1	26351	chrX:149895687:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[1234],CD99L2->CD99_molecule_like_2,chrX:149934810-150067289:-,MTMR1->chrX:149861435-149933576:+,myotubularin_related_protein_1	TOV112D_OVARY	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	CHD2--DNM3OS	2	0	CHD2	6529	chr15:93444529:+	DNM3OS	60207	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	TOV112D_OVARY	1	1	0.0225	TRUE	1	2	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	HYDIN--NBPF15	2	0	HYDIN	1063	chr16:71264563:-	NBPF15	125242	chr1:148588994:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-,NBPF15->chr1:148555979-148596267:+,neuroblastoma_breakpoint_family_member_15	TOV112D_OVARY	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	HYDIN--NBPF15	2	0	HYDIN	1093	chr16:71264533:-	NBPF15	125242	chr1:148588994:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-,NBPF15->chr1:148555979-148596267:+,neuroblastoma_breakpoint_family_member_15	TOV112D_OVARY	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	PTBP2--DNM3OS	2	0	PTBP2	2930	chr1:97189150:+	DNM3OS	28684	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	TOV112D_OVARY	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	TWSG1--ANKRD12	2	0	TWSG1	2314	chr18:9337350:+	ANKRD12	17443	chr18:9195549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_REARRANGEMENT:+:[48782],TWSG1->chr18:9334765-9402418:+,twisted_gastrulation_BMP_signaling_modulator_1,ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+	TOV112D_OVARY	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	VPS13B--RP11-44N12.2	1	2	VPS13B	2814	chr8:100050794:+	RP11-44N12.2	81363	chr8:99977692:+	ONLY_REF_SPLICE	YES	22	0	0.12	1	0.0112	0.0225	LOCAL_REARRANGEMENT:+:[44982],VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),RP11-44N12.2->chr8:99973656-99980512:+	TOV112D_OVARY	0.12	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000048
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--TP63	331	92	FOXK2	5079	chr17:80526077:+	TP63	29777	chr3:189526061:+	ONLY_REF_SPLICE	YES	60	141	0.88	0.75	3.5281	0.9806	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,TP63->chr3:189349205-189615068:+,tumor_protein_p63	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.88	4.5087	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TP63--FOXK2	265	108	TP63	3197	chr3:189456563:+	FOXK2	31551	chr17:80529600:+	ONLY_REF_SPLICE	YES	157	60	0.7	0.86	2.8246	1.1512	TP63->chr3:189349205-189615068:+,tumor_protein_p63,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.86	3.9758	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCCA--MBNL2	50	18	PCCA	3510	chr13:100764315:+	MBNL2	40119	chr13:97986530:+	ONLY_REF_SPLICE	YES	25	54	0.73	0.56	0.5329	0.1919	PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit,MBNL2->chr13:97873688-98046374:+,muscleblind_like_splicing_regulator_2	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	0.73	0.7248	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRN1--CPLX4	44	28	XRN1	21441	chr3:142116171:-	CPLX4	52620	chr18:56964157:-	ONLY_REF_SPLICE	YES	17	0	0.81	1	0.469	0.2984	XRN1->5'-3'_exoribonuclease_1,chr3:142025449-142166904:-,CPLX4->chr18:56942388-56985881:-,complexin_4	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.7674	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UTRN--GPHN	32	21	UTRN	59552	chr6:144999714:+	GPHN	97470	chr14:67243182:+	ONLY_REF_SPLICE	YES	29	22	0.65	0.71	0.3411	0.2238	UTRN->chr6:144606837-145174170:+,utrophin,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.71	0.5649	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UTRN--GPHN	10	25	UTRN	59552	chr6:144999714:+	GPHN	96368	chr14:67176075:+	ONLY_REF_SPLICE	YES	29	22	0.55	0.61	0.1066	0.2665	UTRN->chr6:144606837-145174170:+,utrophin,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.61	0.3731	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--TP63	10	21	FOXK2	3931	chr17:80521424:+	TP63	29777	chr3:189526061:+	ONLY_REF_SPLICE	YES	66	141	0.32	0.18	0.1066	0.2238	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,TP63->chr3:189349205-189615068:+,tumor_protein_p63	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.32	0.3304	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--TP63	4	19	FOXK2	5079	chr17:80526077:+	TP63	32248	chr3:189582021:+	ONLY_REF_SPLICE	NO	60	267	0.28	0.08	0.0426	0.2025	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,TP63->chr3:189349205-189615068:+,tumor_protein_p63	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.28	0.2451	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--EIF3A	5	0	PTMA	6060	chr2:232576693:+	EIF3A	30948	chr10:120795654:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0533	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	4	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0426	TRUE	1	10	0	18	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF126--BSG	4	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0426	TRUE	0	2	0	12	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYPLAL1--RRP15	3	0	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	TRUE	0	12	0	13	2	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	54382	chr21:38555076:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	2	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	15	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--MBNL1	2	0	DANCR	1530	chr4:53579126:+	MBNL1	17741	chr3:152132730:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--IVNS1ABP	2	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	1	4	0	16	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NINJ2--WNK1	2	0	NINJ2	1452	chr12:772494:-	WNK1	12316	chr12:922808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hypothalamus=1},LOCAL_INVERSION:-:+:[88814],NINJ2->chr12:673462-772945:-,ninjurin_2,WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDK1--AC015688.3	2	0	PDK1	13815	chr2:173460751:+	AC015688.3	35125	chr17:25967598:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1,AC015688.3->chr17:25950390-25967803:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	R3HDM1--CCNT2	2	0	R3HDM1	1179	chr2:136289203:+	CCNT2	40410	chr2:135694411:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,CCNT2->chr2:135675805-135716912:+,cyclin_T2	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM12B--NSMCE2	2	0	RBM12B	1137	chr8:94753109:-	NSMCE2	25658	chr8:126369461:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RBM12B->RNA_binding_motif_protein_12B,chr8:94741584-94753245:-,NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3GL1--CHAF1A	2	0	SH3GL1	1224	chr19:4400321:-	CHAF1A	29087	chr19:4442242:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_INVERSION:-:+:[2115],SH3GL1->Oncogene{Bushman},SH3_domain_containing_GRB2_like_1,chr19:4360367-4400544:-,CHAF1A->chr19:4402659-4445015:+,chromatin_assembly_factor_1_subunit_A	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WSB1--RAB1A	2	0	WSB1	10088	chr17:25636298:+	RAB1A	20985	chr2:65325200:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VGLL4--WDPCP	1	1	VGLL4	4478	chr3:11744445:-	WDPCP	36198	chr2:63791758:-	ONLY_REF_SPLICE	YES	28	10	0.07	0.17	0.0107	0.0107	VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.17	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000061
CAS1_CENTRAL_NERVOUS_SYSTEM	UBXN8--RP11-363L24.3	19	8	UBXN8	8488	chr8:30614404:+	RP11-363L24.3	17254	chr8:31028834:-	ONLY_REF_SPLICE	YES	31	0	0.47	1	0.2192	0.0923	UBXN8->UBX_domain_protein_8,chr8:30589764-30624522:+,RP11-363L24.3->chr8:31024594-31034683:-	CAS1_CENTRAL_NERVOUS_SYSTEM	0.47	1	0.3115	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	WRN--GSR	5	2	WRN	34402	chr8:31024746:+	GSR	41212	chr8:30569605:-	ONLY_REF_SPLICE	YES	16	45	0.3	0.13	0.0577	0.0231	WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+,GSR->chr8:30535583-30585443:-,glutathione_reductase	CAS1_CENTRAL_NERVOUS_SYSTEM	0.13	0.3	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	APPBP2--ANAPC4	2	0	APPBP2	2515	chr17:58577760:-	ANAPC4	46628	chr4:25417088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-,ANAPC4->anaphase_promoting_complex_subunit_4,chr4:25378835-25420120:+	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	CNIH3--PRKCA	2	0	CNIH3	21273	chr1:224872545:+	PRKCA	37049	chr17:64683229:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	CNIH3->chr1:224622362-224928251:+,cornichon_family_AMPA_receptor_auxiliary_protein_3,PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	FOSL1--XPO1	2	0	FOSL1	3639	chr11:65661485:-	XPO1	34132	chr2:61708416:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	FOXP1--VIM	2	0	FOXP1	5088	chr3:71542577:-	VIM	54806	chr10:17277845:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,VIM->chr10:17270258-17279592:+,vimentin	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	LUZP1--LPPR3	2	0	LUZP1	2577	chr1:23495259:-	LPPR3	20890	chr19:815851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,LPPR3->chr19:812518-821967:-	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	PANX1--AMOTL1	2	0	PANX1	1566	chr11:93862659:+	AMOTL1	22559	chr11:94583279:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PANX1->chr11:93862094-93915138:+,pannexin_1,AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	UGGT2--METTL21EP	2	0	UGGT2	16543	chr13:96622366:-	METTL21EP	50788	chr13:103543686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	UGGT2->UDP-glucose_glycoprotein_glucosyltransferase_2,chr13:96453834-96705736:-,METTL21EP->chr13:103532449-103548383:+,methyltransferase_like_21E,_pseudogene	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MLLT3--DENND4C	1	1	MLLT3	2890	chr9:20620653:-	DENND4C	52570	chr9:19350700:+	ONLY_REF_SPLICE	NO	6	23	0.25	0.08	0.0115	0.0115	MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3,DENND4C->DENN_domain_containing_4C,chr9:19230433-19374139:+	CAS1_CENTRAL_NERVOUS_SYSTEM	0.08	0.25	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000464
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	127	58	BCR	3536	chr22:23524426:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	91	13	0.67	0.93	1.3101	0.5983	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.93	1.9084	TRUE	0	2	0	1	2	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	62	30	ABL1	2970	chr9:133710912:+	BCR	27841	chr22:23595986:+	ONLY_REF_SPLICE	YES	12	89	0.88	0.51	0.6396	0.3095	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.88	0.9491	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	30	17	ABL1	1510	chr9:133589842:+	BCR	27841	chr22:23595986:+	ONLY_REF_SPLICE	YES	7	89	0.87	0.35	0.3095	0.1754	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.87	0.4849	TRUE	0	1	0	1	1	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	2	58	BCR	5636	chr22:23541539:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	93	13	0.39	0.82	0.0206	0.5983	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.82	0.6189	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	1	58	BCR	3536	chr22:23524426:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	NO	91	13	0.39	0.82	0.0103	0.5983	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.82	0.6086	TRUE	0	2	0	1	2	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRG--CADPS	5	1	PTPRG	10407	chr3:61989171:+	CADPS	49308	chr3:62751659:-	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0516	0.0103	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Amygdala=1},PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,CADPS->Ca2+_dependent_secretion_activator,chr3:62384022-62861054:-	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.0619	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK6--EPM2A	3	0	CDK6	6518	chr7:92354940:-	EPM2A	26896	chr6:146007432:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6,EPM2A->chr6:145822719-146057160:-,epilepsy,_progressive_myoclonus_type_2A,_Lafora_disease_(laforin)	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	3	0	NCL	6013	chr2:232326251:-	PTMA	22576	chr2:232577213:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	1	0	0	7	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SKA3--MIPEP	3	0	SKA3	1228	chr13:21750514:-	MIPEP	15448	chr13:24460645:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	SKA3->chr13:21727734-21750741:-,spindle_and_kinetochore_associated_complex_subunit_3,MIPEP->chr13:24304328-24463558:-,mitochondrial_intermediate_peptidase	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRRM2--PAK2	3	0	SRRM2	16105	chr16:2819122:+	PAK2	38890	chr3:196556171:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	SRRM2->chr16:2802330-2822539:+,serine/arginine_repetitive_matrix_2,PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCOF1--PTMA	3	0	TCOF1	10789	chr5:149755852:+	PTMA	36295	chr2:232577153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	TCOF1->chr5:149737202-149779871:+,treacle_ribosome_biogenesis_factor_1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AHCTF1--PLK4	2	0	AHCTF1	13122	chr1:247061510:-	PLK4	52598	chr4:128812247:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,PLK4->chr4:128802016-128820350:+,polo_like_kinase_4	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATE1--RIPK1	2	0	ATE1	9819	chr10:123658356:-	RIPK1	25204	chr6:3076998:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ATE1->arginyltransferase_1,chr10:123499939-123688316:-,RIPK1->chr6:3064225-3115421:+,receptor_interacting_serine/threonine_kinase_1	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf37--GNAS	2	0	C14orf37	1185	chr14:58764673:-	GNAS	37556	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMC2--CD9	2	0	CMC2	2457	chr16:81040339:-	CD9	21473	chr12:6334592:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-,CD9->CD9_molecule,Oncogene{Bushman},chr12:6308881-6347425:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--PRPF4B	2	0	CPSF6	11046	chr12:69656342:+	PRPF4B	36987	chr6:4061249:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PRPF4B->Oncogene{Bushman},chr6:4021501-4065217:+,pre-mRNA_processing_factor_4B	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	1	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2291D10.4--CAMLG	2	0	CTD-2291D10.4	1187	chr19:23258189:+	CAMLG	11998	chr5:134086449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	CTD-2291D10.4->chr19:23258003-23283163:+,CAMLG->calcium_modulating_ligand,chr5:134074191-134087847:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUL2--PARD3	2	0	CUL2	7237	chr10:35349802:-	PARD3	52459	chr10:34606266:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx&tcga_normals:1/3694=0.03%,CUL2->chr10:35297479-35379570:-,cullin_2,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND1A--OSBPL1A	2	0	DENND1A	1264	chr9:126692168:-	OSBPL1A	67125	chr18:21819346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERBB2IP--GUSBP2	2	0	ERBB2IP	1332	chr5:65222634:+	GUSBP2	41956	chr6:26856976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ERBB2IP->chr5:65222303-65378377:+,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FDPS--CRY2	2	0	FDPS	3847	chr1:155282186:+	CRY2	16892	chr11:45883611:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,CRY2->chr11:45868669-45904798:+,cryptochrome_circadian_clock_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GATAD2B--EEF1D	2	0	GATAD2B	1243	chr1:153895209:-	EEF1D	30360	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTA1--TRIM22	2	0	MTA1	10235	chr14:105927290:+	TRIM22	26291	chr11:5719545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1,TRIM22->chr11:5710919-5758319:+,tripartite_motif_containing_22	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCLN--SGTA	2	0	NCLN	1652	chr19:3186212:+	SGTA	21568	chr19:2769089:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	NCLN->chr19:3185561-3209573:+,nicalin,SGTA->chr19:2754712-2783369:-,small_glutamine_rich_tetratricopeptide_repeat_containing_alpha	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA6--CD52	2	0	NDUFA6	1350	chr22:42486610:-	CD52	9200	chr1:26646662:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	NDUFA6->NADH:ubiquinone_oxidoreductase_subunit_A6,chr22:42481529-42486959:-,CD52->CD52_molecule,Oncogene{Bushman},chr1:26644448-26647014:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--PGAM5	2	0	OAZ1	1259	chr19:2269743:+	PGAM5	13887	chr12:133297264:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAIP2--C19orf44	2	0	PAIP2	4805	chr5:138700432:+	C19orf44	16817	chr19:16620310:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAIP2--RNH1	2	0	PAIP2	1394	chr5:138677669:+	RNH1	15257	chr11:502181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,RNH1->chr11:494512-507300:-,ribonuclease/angiogenin_inhibitor_1	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCNT--DUSP1	2	0	PCNT	1161	chr21:47744196:+	DUSP1	55341	chr5:172197309:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	PCNT->chr21:47744036-47865682:+,pericentrin,DUSP1->chr5:172195093-172198198:-,dual_specificity_phosphatase_1	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKDC--MCM4	2	0	PRKDC	1211	chr8:48872533:-	MCM4	96812	chr8:48882358:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[2],PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RLF--CPNE1	2	0	RLF	1264	chr1:40627308:+	CPNE1	22223	chr20:34220845:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,CPNE1->chr20:34213953-34252878:-,copine_1	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-321N4.5--SRP9	2	0	RP11-321N4.5	2343	chr6:86322550:-	SRP9	11024	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RP11-321N4.5->chr6:86267696-86324952:-,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL22--MRPS27	2	0	RPL22	8153	chr1:6252990:-	MRPS27	24355	chr5:71533955:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,MRPS27->chr5:71515236-71616473:-,mitochondrial_ribosomal_protein_S27	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL5--ANKHD1	2	0	RPL5	1093	chr1:93297674:+	ANKHD1	51107	chr5:139928491:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC35E3--LRRC41	2	0	SLC35E3	1674	chr12:69140559:+	LRRC41	27398	chr1:46744929:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	SLC35E3->chr12:69139886-69187508:+,solute_carrier_family_35_member_E3,LRRC41->chr1:46726868-46769280:-,leucine_rich_repeat_containing_41	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TADA2A--USP48	2	0	TADA2A	3848	chr17:35783715:+	USP48	53680	chr1:22021714:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBXN2B--KIFAP3	2	0	UBXN2B	1206	chr8:59324028:+	KIFAP3	41776	chr1:169930376:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	UBXN2B->UBX_domain_protein_2B,chr8:59323823-59364060:+,KIFAP3->chr1:169890467-170054349:-,kinesin_associated_protein_3	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VEZT--METAP2	2	0	VEZT	1141	chr12:95611662:+	METAP2	41371	chr12:95897841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	VEZT->chr12:95611522-95696566:+,vezatin,_adherens_junctions_transmembrane_protein,METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	2	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR45B--HKR1	2	0	WDR45B	2355	chr17:80601825:-	HKR1	30463	chr19:37838092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-,HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WT1-AS--EFTUD2	2	0	WT1-AS	1329	chr11:32457392:+	EFTUD2	41491	chr17:42931003:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	WT1-AS->WT1_antisense_RNA,chr11:32457064-32480315:+,EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFC3H1--CNOT2	2	0	ZFC3H1	5746	chr12:72050665:-	CNOT2	47007	chr12:70704675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ZFC3H1->chr12:72003252-72061505:-,zinc_finger_C3H1-type_containing,CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF189--TMEM38B	2	0	ZNF189	2138	chr9:104162292:+	TMEM38B	14033	chr9:108483818:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ZNF189->chr9:104161155-104172942:+,zinc_finger_protein_189,TMEM38B->chr9:108456825-108538893:+,transmembrane_protein_38B	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZSCAN16-AS1--MAP3K5	2	0	ZSCAN16-AS1	1549	chr6:28104523:-	MAP3K5	32065	chr6:136913752:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ZSCAN16-AS1->ZSCAN16_antisense_RNA_1,chr6:28089573-28105071:-,MAP3K5->chr6:136878185-137113656:-,mitogen-activated_protein_kinase_kinase_kinase_5	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX29--GSPT1	1	2	SNX29	19351	chr16:12223615:+	GSPT1	43359	chr16:11991892:-	ONLY_REF_SPLICE	YES	10	71	0.23	0.04	0.0103	0.0206	GTEx_v2:{count=2;pct=0.02%;dist=Ovary=1,Brain_-_Spinal_cord_(cervical_c-1)=1},LOCAL_INVERSION:+:-:[60655],SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,GSPT1->G1_to_S_phase_transition_1,Oncogene{Bushman},chr16:11961985-12009939:-	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.23	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000059
A427_LUNG	AFG3L2--SPIRE1	49	48	AFG3L2	12978	chr18:12348272:-	SPIRE1	41344	chr18:12464957:-	ONLY_REF_SPLICE	YES	637	137	0.13	0.41	0.3898	0.3819	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[69198],AFG3L2->AFG3_like_matrix_AAA_peptidase_subunit_2,chr18:12328943-12377313:-,SPIRE1->chr18:12446511-12658133:-,spire_type_actin_nucleation_factor_1	A427_LUNG	0.13	0.41	0.7717	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	CLIC4--SRRM1	36	67	CLIC4	1269	chr1:25072116:+	SRRM1	16370	chr1:24962135:+	ONLY_REF_SPLICE	YES	540	0	0.16	1	0.2864	0.533	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[72090],CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	A427_LUNG	0.16	1	0.8194	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	CLIC4--SRRM1	30	90	CLIC4	1269	chr1:25072116:+	SRRM1	15289	chr1:24959510:+	ONLY_REF_SPLICE	YES	540	0	0.18	1	0.2387	0.716	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[72090],CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	A427_LUNG	0.18	1	0.9547	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	NOTCH2--PDE4DIP	42	21	NOTCH2	4777	chr1:120572529:-	PDE4DIP	55307	chr1:145021167:-	ONLY_REF_SPLICE	YES	63	2	0.5	0.97	0.3342	0.1671	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	A427_LUNG	0.5	0.97	0.5013	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	NADSYN1--MTL5	40	25	NADSYN1	20833	chr11:71194063:+	MTL5	54226	chr11:68478517:-	ONLY_REF_SPLICE	YES	259	2	0.2	0.97	0.3182	0.1989	{Klijn_CCL:Lung=1},NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+,MTL5->chr11:68474908-68519032:-	A427_LUNG	0.2	0.97	0.5171	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	CLIC4--SRRM1	34	25	CLIC4	1269	chr1:25072116:+	SRRM1	20487	chr1:24972475:+	ONLY_REF_SPLICE	YES	540	14	0.1	0.81	0.2705	0.1989	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[72090],CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	A427_LUNG	0.1	0.81	0.4694	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RP11-355B11.2--FAM161A	38	4	RP11-355B11.2	1192	chr2:61698514:+	FAM161A	17574	chr2:62054393:-	ONLY_REF_SPLICE	YES	1	49	0.98	0.46	0.3023	0.0318	RP11-355B11.2->chr2:61698323-61711265:+,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	A427_LUNG	0.46	0.98	0.3341	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	NADSYN1--MTL5	24	38	NADSYN1	21969	chr11:71195493:+	MTL5	54226	chr11:68478517:-	ONLY_REF_SPLICE	YES	197	2	0.24	0.97	0.1909	0.3023	{Klijn_CCL:Lung=1},NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+,MTL5->chr11:68474908-68519032:-	A427_LUNG	0.24	0.97	0.4932	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	PPIL4--KATNA1	30	9	PPIL4	5926	chr6:149854594:-	KATNA1	21912	chr6:149925918:-	ONLY_REF_SPLICE	YES	100	97	0.28	0.29	0.2387	0.0716	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[48835],PPIL4->chr6:149825869-149867174:-,peptidylprolyl_isomerase_like_4,KATNA1->chr6:149916009-149970108:-,katanin_catalytic_subunit_A1	A427_LUNG	0.28	0.29	0.3103	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	LPP--KNTC1	21	34	LPP	5388	chr3:187943315:+	KNTC1	69238	chr12:123046468:+	ONLY_REF_SPLICE	YES	8	1	0.87	0.98	0.1671	0.2705	LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1	A427_LUNG	0.87	0.98	0.4376	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	AP003900.6--RP11-417J8.3	27	3	AP003900.6	1122	chr21:11169841:+	RP11-417J8.3	9877	chr1:142621001:+	ONLY_REF_SPLICE	YES	10	16	0.75	0.65	0.2148	0.0239	AP003900.6->chr21:11169720-11184046:+,RP11-417J8.3->chr1:142618769-142729975:+	A427_LUNG	0.65	0.75	0.2387	TRUE	0	0	0	2	0	TRUE	ACH-000757
A427_LUNG	RP11-849H4.2--UNC93B1	17	8	RP11-849H4.2	4416	chr11:71634355:-	UNC93B1	18284	chr11:67767150:-	ONLY_REF_SPLICE	YES	20	166	0.56	0.13	0.1353	0.0636	RP11-849H4.2->chr11:71576555-71639700:-,UNC93B1->chr11:67758575-67772452:-,unc-93_homolog_B1_(C._elegans)	A427_LUNG	0.13	0.56	0.1989	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RP11-355B11.2--FAM161A	14	18	RP11-355B11.2	4015	chr2:61709871:+	FAM161A	17574	chr2:62054393:-	ONLY_REF_SPLICE	YES	35	49	0.48	0.4	0.1114	0.1432	RP11-355B11.2->chr2:61698323-61711265:+,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	A427_LUNG	0.4	0.48	0.2546	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	LPIN2--ARHGAP28	13	11	LPIN2	23718	chr18:2920776:-	ARHGAP28	39528	chr18:6824761:+	ONLY_REF_SPLICE	YES	109	4	0.18	0.86	0.1034	0.0875	LPIN2->chr18:2916992-3013313:-,lipin_2,ARHGAP28->Rho_GTPase_activating_protein_28,chr18:6729717-6915715:+	A427_LUNG	0.18	0.86	0.1909	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	KCTD3--KCNK2	11	4	KCTD3	2710	chr1:215747461:+	KCNK2	31911	chr1:215368296:+	ONLY_REF_SPLICE	YES	17	0	0.47	1	0.0875	0.0318	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},KCTD3->chr1:215740735-215795149:+,potassium_channel_tetramerization_domain_containing_3,KCNK2->chr1:215179118-215410436:+,potassium_two_pore_domain_channel_subfamily_K_member_2	A427_LUNG	0.47	1	0.1193	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	GCG--IFIH1	10	0	GCG	1247	chr2:163008668:-	IFIH1	17731	chr2:163139086:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0796	0	GCG->chr2:162999392-163008914:-,glucagon,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	A427_LUNG	1	1	0.0796	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	NADSYN1--MTL5	3	25	NADSYN1	21969	chr11:71195493:+	MTL5	54281	chr11:68478462:-	INCL_NON_REF_SPLICE	YES	197	4	0.12	0.88	0.0239	0.1989	{Klijn_CCL:Lung=1},NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+,MTL5->chr11:68474908-68519032:-	A427_LUNG	0.12	0.88	0.2228	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	LPP--KNTC1	6	8	LPP	1738	chr3:187871809:+	KNTC1	69238	chr12:123046468:+	ONLY_REF_SPLICE	YES	7	1	0.67	0.93	0.0477	0.0636	LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1	A427_LUNG	0.67	0.93	0.1113	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	LPP--KNTC1	4	15	LPP	2859	chr3:187926106:+	KNTC1	69238	chr12:123046468:+	ONLY_REF_SPLICE	YES	12	1	0.61	0.95	0.0318	0.1193	LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1	A427_LUNG	0.61	0.95	0.1511	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	LRRK2--RP11-399D6.2	7	0	LRRK2	2660	chr12:40619442:+	RP11-399D6.2	67607	chr9:22820737:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0557	0	LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2,RP11-399D6.2->chr9:22646199-22824212:+	A427_LUNG	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	C7orf10--CDK13	6	0	C7orf10	12564	chr7:40356454:+	CDK13	30326	chr7:40027198:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0477	0	LOCAL_REARRANGEMENT:+:[37842],C7orf10->chr7:40174575-40900362:+,CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13	A427_LUNG	1	1	0.0477	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	EIF1--PPIA	5	1	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	63	0	0.09	1	0.0398	0.008	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	A427_LUNG	0.09	1	0.0478	TRUE	0	0	0	7	0	TRUE	ACH-000757
A427_LUNG	AP005482.1--RNMT	4	4	AP005482.1	1731	chr18:12658772:+	RNMT	8110	chr18:13731475:+	ONLY_REF_SPLICE	YES	7	195	0.53	0.04	0.0318	0.0318	AP005482.1->chr18:12658042-12663470:+,RNMT->RNA_guanine-7_methyltransferase,chr18:13726659-13764557:+	A427_LUNG	0.04	0.53	0.0636	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	MRE11A--CNTN5	4	0	MRE11A	16618	chr11:94192574:-	CNTN5	45615	chr11:100061858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	MRE11A->ArcherDX_panel,FoundationOne_panel,MRE11_homolog_A,_double_strand_break_repair_nuclease,Oncogene{Bushman},chr11:94152895-94227074:-,CNTN5->chr11:98891683-100229616:+,contactin_5	A427_LUNG	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	MYOM1--DLGAP1	4	0	MYOM1	2624	chr18:3214932:-	DLGAP1	47565	chr18:4005201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	MYOM1->chr18:3066805-3220106:-,myomesin_1,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	A427_LUNG	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	PIEZO2--GNAL	3	3	PIEZO2	2160	chr18:11066126:-	GNAL	76869	chr18:11824917:+	ONLY_REF_SPLICE	YES	0	30	1	0.17	0.0239	0.0239	PIEZO2->chr18:10666480-11148587:-,piezo_type_mechanosensitive_ion_channel_component_2,GNAL->G_protein_subunit_alpha_L,chr18:11688955-11885684:+	A427_LUNG	0.17	1	0.0478	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RABGAP1L--KLHL20	3	3	RABGAP1L	5083	chr1:174200493:+	KLHL20	60750	chr1:173725062:+	ONLY_REF_SPLICE	YES	41	40	0.13	0.13	0.0239	0.0239	{Klijn_CCL:Lung=1},RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,KLHL20->chr1:173684080-173755840:+,kelch_like_family_member_20	A427_LUNG	0.13	0.13	0.0478	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	EIF1--ACTB	3	1	EIF1	1107	chr17:39845243:+	ACTB	11209	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	63	4	0.06	0.5	0.0239	0.008	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Fallopian_Tube=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	A427_LUNG	0.06	0.5	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	BTG3--CXADR	3	0	BTG3	8807	chr21:18965977:-	CXADR	24807	chr21:18965696:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},LOCAL_INVERSION:-:+:[74],BTG3->BTG_family_member_3,chr21:18965971-18985265:-,CXADR->chr21:18884700-18965897:+,coxsackie_virus_and_adenovirus_receptor	A427_LUNG	1	1	0.0239	TRUE	1	0	0	2	0	TRUE	ACH-000757
A427_LUNG	BTG3--CXADR	3	0	BTG3	8732	chr21:18966052:-	CXADR	24967	chr21:18965856:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},LOCAL_INVERSION:-:+:[74],BTG3->BTG_family_member_3,chr21:18965971-18985265:-,CXADR->chr21:18884700-18965897:+,coxsackie_virus_and_adenovirus_receptor	A427_LUNG	1	1	0.0239	TRUE	1	0	0	2	0	TRUE	ACH-000757
A427_LUNG	CALR--RPS28	3	0	CALR	1131	chr19:13049522:+	RPS28	8929	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0	CALR->calreticulin,chr19:13049392-13055303:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	A427_LUNG	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	DLC1--FMNL2	3	0	DLC1	10024	chr8:13133771:-	FMNL2	44960	chr2:153463853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,FMNL2->chr2:153191751-153506348:+,formin_like_2	A427_LUNG	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RCC1--GNAS	3	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	A427_LUNG	1	1	0.0239	TRUE	0	3	0	13	2	TRUE	ACH-000757
A427_LUNG	RP11-355B11.2--FAM161A	3	0	RP11-355B11.2	1184	chr2:61698506:+	FAM161A	19166	chr2:62052801:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0	RP11-355B11.2->chr2:61698323-61711265:+,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	A427_LUNG	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RP11-355B11.2--FAM161A	1	8	RP11-355B11.2	2905	chr2:61707718:+	FAM161A	17574	chr2:62054393:-	ONLY_REF_SPLICE	YES	14	49	0.39	0.16	0.008	0.0636	RP11-355B11.2->chr2:61698323-61711265:+,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	A427_LUNG	0.16	0.39	0.0716	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	AP003900.6--RP11-417J8.3	2	3	AP003900.6	3299	chr21:11174002:+	RP11-417J8.3	9877	chr1:142621001:+	ONLY_REF_SPLICE	YES	32	16	0.14	0.24	0.0159	0.0239	AP003900.6->chr21:11169720-11184046:+,RP11-417J8.3->chr1:142618769-142729975:+	A427_LUNG	0.14	0.24	0.0398	TRUE	0	0	0	2	0	TRUE	ACH-000757
A427_LUNG	ADD3--KIAA1598	2	0	ADD3	3765	chr10:111768057:+	KIAA1598	36980	chr10:118719741:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	ADD3->Oncogene{Bushman},adducin_3,chr10:111756126-111895323:+,KIAA1598->chr10:118643742-118886097:-	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	ANKHD1--CYSTM1	2	0	ANKHD1	1460	chr5:139781858:+	CYSTM1	47050	chr5:139622890:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1	A427_LUNG	1	1	0.0159	TRUE	1	2	1	5	0	TRUE	ACH-000757
A427_LUNG	ANXA1--ALDH1A1	2	0	ANXA1	1168	chr9:75766840:+	ALDH1A1	21839	chr9:75555168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	LOCAL_INVERSION:+:-:[71315],ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	A427_LUNG	1	1	0.0159	TRUE	0	0	0	4	0	TRUE	ACH-000757
A427_LUNG	CASP8--FANCC	2	0	CASP8	1670	chr2:202098835:+	FANCC	37121	chr9:97888863:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	CASP8->Oncogene{Bushman},caspase_8,chr2:202098166-202152434:+,FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	CCDC34--SRRM1	2	0	CCDC34	4280	chr11:27371879:-	SRRM1	22701	chr1:24975350:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	CCDC34->chr11:27352374-27385415:-,coiled-coil_domain_containing_34,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	DCUN1D2--TFDP1	2	0	DCUN1D2	1286	chr13:114144982:-	TFDP1	18891	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[93746],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	A427_LUNG	1	1	0.0159	TRUE	0	1	0	6	1	TRUE	ACH-000757
A427_LUNG	INSR--SET	2	0	INSR	2795	chr19:7267356:-	SET	40215	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	INSR->chr19:7112266-7294045:-,insulin_receptor,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	MBLAC1--UBE2I	2	0	MBLAC1	1440	chr7:99724756:+	UBE2I	13659	chr16:1364021:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	MBLAC1->chr7:99724317-99726118:+,metallo-beta-lactamase_domain_containing_1,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	MKNK2--CCT3	2	0	MKNK2	1444	chr19:2050800:-	CCT3	16699	chr1:156305679:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	MKNK2->MAP_kinase_interacting_serine/threonine_kinase_2,chr19:2037470-2051243:-,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RP5-1158E12.3--CT45A4	2	0	RP5-1158E12.3	3112	chrX:45708809:-	CT45A4	8673	chrX:134950252:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RP5-1158E12.3->chrX:45707328-45710920:-,CT45A4->chrX:134928331-134953994:-	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	TJP1--WDR43	2	0	TJP1	6366	chr15:30092849:-	WDR43	61583	chr2:29169316:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	TJP1->chr15:29991571-30261068:-,tight_junction_protein_1,WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	UVSSA--MAEA	2	0	UVSSA	1924	chr4:1341977:+	MAEA	26629	chr4:1305767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	A427_LUNG	1	1	0.0159	TRUE	0	3	0	4	2	TRUE	ACH-000757
A427_LUNG	PIEZO2--GNAL	1	1	PIEZO2	2160	chr18:11066126:-	GNAL	80475	chr18:11862394:+	ONLY_REF_SPLICE	YES	0	38	1	0.05	0.008	0.008	PIEZO2->chr18:10666480-11148587:-,piezo_type_mechanosensitive_ion_channel_component_2,GNAL->G_protein_subunit_alpha_L,chr18:11688955-11885684:+	A427_LUNG	0.05	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000757
JHH1_LIVER	ZNF787--ZSCAN5B	112	28	ZNF787	1109	chr19:56632541:-	ZSCAN5B	9675	chr19:56709289:-	ONLY_REF_SPLICE	YES	29	0	0.83	1	1.5235	0.3809	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[68290],ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787,ZSCAN5B->chr19:56700939-56709289:-,zinc_finger_and_SCAN_domain_containing_5B	JHH1_LIVER	0.83	1	1.9044	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	SYNRG--EVX1	80	19	SYNRG	20601	chr17:35913217:-	EVX1	41363	chr7:27284667:+	ONLY_REF_SPLICE	YES	68	0	0.59	1	1.0882	0.2585	{Klijn_CCL:Liver=1},SYNRG->chr17:35874900-35969544:-,synergin,_gamma,EVX1->chr7:27282164-27290112:+,even-skipped_homeobox_1	JHH1_LIVER	0.59	1	1.3467	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	TANC1--CRLF1	40	24	TANC1	9655	chr2:160007067:+	CRLF1	45675	chr19:18705244:-	ONLY_REF_SPLICE	YES	49	20	0.57	0.76	0.5441	0.3265	{Klijn_CCL:Liver=1},TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,CRLF1->chr19:18683030-18718551:-,cytokine_receptor_like_factor_1	JHH1_LIVER	0.57	0.76	0.8706	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	CA5BP1--GS1-594A7.3	43	10	CA5BP1	3501	chrX:15699170:+	GS1-594A7.3	15673	chrX:15639135:+	ONLY_REF_SPLICE	YES	13	0	0.8	1	0.5849	0.136	LOCAL_REARRANGEMENT:+:[53448],CA5BP1->carbonic_anhydrase_5B_pseudogene_1,chrX:15693055-15721847:+,GS1-594A7.3->chrX:15621004-15639607:+	JHH1_LIVER	0.8	1	0.7209	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	CCT6P1--VKORC1L1	38	17	CCT6P1	1137	chr7:65216265:+	VKORC1L1	15876	chr7:65413658:+	ONLY_REF_SPLICE	YES	6	52	0.9	0.51	0.5169	0.2312	CCT6P1->chaperonin_containing_TCP1_subunit_6_pseudogene_1,chr7:65216129-65228341:+,VKORC1L1->chr7:65338254-65424550:+,vitamin_K_epoxide_reductase_complex_subunit_1_like_1	JHH1_LIVER	0.51	0.9	0.7481	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	PTPN14--ABHD17AP3	20	12	PTPN14	2267	chr1:214724526:-	ABHD17AP3	43165	chr1:214781827:-	INCL_NON_REF_SPLICE	YES	65	2	0.33	0.94	0.2721	0.1632	LOCAL_REARRANGEMENT:-:[53021],PTPN14->Oncogene{Bushman},chr1:214522039-214725792:-,protein_tyrosine_phosphatase,_non-receptor_type_14,ABHD17AP3->abhydrolase_domain_containing_17A_pseudogene_3,chr1:214778813-214782183:-	JHH1_LIVER	0.33	0.94	0.4353	TRUE	0	0	0	2	0	TRUE	ACH-000620
JHH1_LIVER	WNK1--IQSEC3	17	14	WNK1	3905	chr12:922980:+	IQSEC3	48075	chr12:234799:+	ONLY_REF_SPLICE	YES	74	0	0.3	1	0.2312	0.1904	{Klijn_CCL:Liver=1},WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,IQSEC3->IQ_motif_and_Sec7_domain_3,chr12:175931-287626:+	JHH1_LIVER	0.3	1	0.4216	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	CA5BP1--GS1-594A7.3	18	6	CA5BP1	1847	chrX:15693901:+	GS1-594A7.3	15673	chrX:15639135:+	ONLY_REF_SPLICE	YES	9	0	0.73	1	0.2448	0.0816	LOCAL_REARRANGEMENT:+:[53448],CA5BP1->carbonic_anhydrase_5B_pseudogene_1,chrX:15693055-15721847:+,GS1-594A7.3->chrX:15621004-15639607:+	JHH1_LIVER	0.73	1	0.3264	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	ERBB4--AC079610.1	18	2	ERBB4	6418	chr2:212812155:-	AC079610.1	50458	chr2:213446132:-	ONLY_REF_SPLICE	YES	10	0	0.67	1	0.2448	0.0272	LOCAL_REARRANGEMENT:-:[42516],ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,AC079610.1->chr2:213446081-213886269:-	JHH1_LIVER	0.67	1	0.272	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	UNK--C17orf77	13	13	UNK	12455	chr17:73813607:+	C17orf77	23695	chr17:72586658:+	ONLY_REF_SPLICE	YES	21	0	0.55	1	0.1768	0.1768	{Klijn_CCL:Liver=1},UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,C17orf77->chr17:72580818-72590348:+,chromosome_17_open_reading_frame_77	JHH1_LIVER	0.55	1	0.3536	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	UNK--C17orf77	10	18	UNK	13097	chr17:73814249:+	C17orf77	23695	chr17:72586658:+	ONLY_REF_SPLICE	YES	36	0	0.44	1	0.136	0.2448	{Klijn_CCL:Liver=1},UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,C17orf77->chr17:72580818-72590348:+,chromosome_17_open_reading_frame_77	JHH1_LIVER	0.44	1	0.3808	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	AGAP1--EXOSC3	12	6	AGAP1	10941	chr2:236659132:+	EXOSC3	42669	chr9:37784060:-	ONLY_REF_SPLICE	YES	28	181	0.39	0.09	0.1632	0.0816	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,EXOSC3->chr9:37766975-37801434:-,exosome_component_3	JHH1_LIVER	0.09	0.39	0.2448	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	AGO2--STRN3	11	9	AGO2	17761	chr8:141554312:-	STRN3	40689	chr14:31381388:-	ONLY_REF_SPLICE	YES	38	55	0.34	0.27	0.1496	0.1224	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,STRN3->chr14:31363005-31495607:-,striatin_3	JHH1_LIVER	0.27	0.34	0.272	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	CA5BP1--GS1-594A7.3	13	0	CA5BP1	1641	chrX:15693695:+	GS1-594A7.3	15673	chrX:15639135:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1768	0	LOCAL_REARRANGEMENT:+:[53448],CA5BP1->carbonic_anhydrase_5B_pseudogene_1,chrX:15693055-15721847:+,GS1-594A7.3->chrX:15621004-15639607:+	JHH1_LIVER	1	1	0.1768	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	CLINT1--CTC-436K13.6	11	4	CLINT1	6469	chr5:157236636:-	CTC-436K13.6	20975	chr5:157661353:-	INCL_NON_REF_SPLICE	YES	317	0	0.05	1	0.1496	0.0544	CLINT1->chr5:157212751-157286183:-,clathrin_interactor_1,CTC-436K13.6->chr5:157652360-157661384:-	JHH1_LIVER	0.05	1	0.204	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	ERBB4--AC079610.1	10	1	ERBB4	3912	chr2:212989477:-	AC079610.1	50458	chr2:213446132:-	ONLY_REF_SPLICE	YES	31	0	0.26	1	0.136	0.0136	LOCAL_REARRANGEMENT:-:[42516],ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,AC079610.1->chr2:213446081-213886269:-	JHH1_LIVER	0.26	1	0.1496	TRUE	0	0	0	2	0	TRUE	ACH-000620
JHH1_LIVER	DENND4B--NUP210L	9	4	DENND4B	8766	chr1:153911376:-	NUP210L	45155	chr1:154027308:-	ONLY_REF_SPLICE	YES	30	0	0.3	1	0.1224	0.0544	{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:-:[45989],DENND4B->DENN_domain_containing_4B,chr1:153901977-153919172:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	JHH1_LIVER	0.3	1	0.1768	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	WNK1--IQSEC3	5	7	WNK1	3905	chr12:922980:+	IQSEC3	49355	chr12:247433:+	ONLY_REF_SPLICE	YES	74	5	0.14	0.71	0.068	0.0952	{Klijn_CCL:Liver=1},WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,IQSEC3->IQ_motif_and_Sec7_domain_3,chr12:175931-287626:+	JHH1_LIVER	0.14	0.71	0.1632	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	SLC13A3--MORN1	6	0	SLC13A3	3341	chr20:45298682:-	MORN1	47942	chr1:2255582:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0816	0	SLC13A3->chr20:45186463-45304714:-,solute_carrier_family_13_member_3,MORN1->MORN_repeat_containing_1,chr1:2252692-2323146:-	JHH1_LIVER	1	1	0.0816	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	CCT6P1--VKORC1L1	3	9	CCT6P1	1137	chr7:65216265:+	VKORC1L1	16986	chr7:65419061:+	ONLY_REF_SPLICE	YES	6	77	0.67	0.13	0.0408	0.1224	CCT6P1->chaperonin_containing_TCP1_subunit_6_pseudogene_1,chr7:65216129-65228341:+,VKORC1L1->chr7:65338254-65424550:+,vitamin_K_epoxide_reductase_complex_subunit_1_like_1	JHH1_LIVER	0.13	0.67	0.1632	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	ABHD14A--AGR3	5	0	ABHD14A	5255	chr3:52012390:+	AGR3	14903	chr7:16901684:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.068	0	ABHD14A->abhydrolase_domain_containing_14A,chr3:52005442-52015212:+,AGR3->anterior_gradient_3,_protein_disulphide_isomerase_family_member,chr7:16899029-16921611:-	JHH1_LIVER	1	1	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	AGO2--STRN3	2	11	AGO2	17761	chr8:141554312:-	STRN3	39426	chr14:31382863:-	ONLY_REF_SPLICE	YES	38	42	0.25	0.24	0.0272	0.1496	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,STRN3->chr14:31363005-31495607:-,striatin_3	JHH1_LIVER	0.24	0.25	0.1768	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	POFUT2--LINC00315	4	2	POFUT2	6936	chr21:46696932:-	LINC00315	20015	chr21:46720418:-	INCL_NON_REF_SPLICE	YES	59	0	0.09	1	0.0544	0.0272	LOCAL_REARRANGEMENT:-:[12347],POFUT2->chr21:46683843-46707813:-,protein_O-fucosyltransferase_2,LINC00315->chr21:46720160-46725172:-,long_intergenic_non-protein_coding_RNA_315	JHH1_LIVER	0.09	1	0.0816	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	AGO2--STRN3	1	12	AGO2	17761	chr8:141554312:-	STRN3	37174	chr14:31398517:-	ONLY_REF_SPLICE	NO	38	45	0.25	0.22	0.0136	0.1632	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,STRN3->chr14:31363005-31495607:-,striatin_3	JHH1_LIVER	0.22	0.25	0.1768	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	AGO2--STRN3	1	11	AGO2	17761	chr8:141554312:-	STRN3	38285	chr14:31388312:-	ONLY_REF_SPLICE	YES	38	39	0.24	0.24	0.0136	0.1496	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,STRN3->chr14:31363005-31495607:-,striatin_3	JHH1_LIVER	0.24	0.24	0.1632	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	FOXK2--OR7E29P	3	1	FOXK2	1595	chr17:80478183:+	OR7E29P	25319	chr3:125431027:+	INCL_NON_REF_SPLICE	YES	14	0	0.22	1	0.0408	0.0136	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,OR7E29P->chr3:125430983-125431889:+,olfactory_receptor_family_7_subfamily_E_member_29_pseudogene	JHH1_LIVER	0.22	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	FNDC3A--RP11-360F5.1	2	1	FNDC3A	4220	chr13:49649500:+	RP11-360F5.1	38901	chr4:39114873:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0272	0.0136	FNDC3A->chr13:49550048-49783915:+,fibronectin_type_III_domain_containing_3A,RP11-360F5.1->chr4:39114297-39128438:-	JHH1_LIVER	0.25	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	TMEM241--CATSPER1	2	1	TMEM241	4388	chr18:20979530:-	CATSPER1	32252	chr11:65790532:-	ONLY_REF_SPLICE	YES	12	0	0.2	1	0.0272	0.0136	TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,CATSPER1->cation_channel_sperm_associated_1,chr11:65784223-65793988:-	JHH1_LIVER	0.2	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	LAMB1--NRCAM	2	0	LAMB1	17269	chr7:107599694:-	NRCAM	76133	chr7:107790592:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1,NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule	JHH1_LIVER	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	SYNRG--EVX1	2	0	SYNRG	20601	chr17:35913217:-	EVX1	44743	chr7:27289767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	{Klijn_CCL:Liver=1},SYNRG->chr17:35874900-35969544:-,synergin,_gamma,EVX1->chr7:27282164-27290112:+,even-skipped_homeobox_1	JHH1_LIVER	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000620
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	563	206	USP49	9000	chr6:41839302:-	MRPS10	28922	chr6:42179655:-	ONLY_REF_SPLICE	YES	2	200	1	0.79	5.9424	2.1743	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.79	1	8.1167	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	291	302	USP49	9000	chr6:41839302:-	MRPS10	27697	chr6:42182082:-	ONLY_REF_SPLICE	YES	2	0	1	1	3.0715	3.1876	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	6.2591	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	TOM1L2--FLII	81	38	TOM1L2	2246	chr17:17810761:-	FLII	33325	chr17:18155870:-	ONLY_REF_SPLICE	YES	47	146	0.72	0.45	0.855	0.4011	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,FLII->Oncogene{Bushman},chr17:18148150-18162230:-,flightless_I_actin_binding_protein	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.45	0.72	1.2561	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	70	72	USP49	9000	chr6:41839302:-	MRPS10	30059	chr6:42178334:-	ONLY_REF_SPLICE	YES	2	247	0.99	0.37	0.7388	0.76	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.37	0.99	1.4988	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	PHTF2--AC002454.1	49	8	PHTF2	1167	chr7:77428288:+	AC002454.1	33770	chr7:92546151:+	ONLY_REF_SPLICE	YES	37	0	0.61	1	0.5172	0.0844	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,AC002454.1->chr7:92465797-92546501:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.61	1	0.6016	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	FRS2--RP11-43N5.1	41	15	FRS2	1182	chr12:69864310:+	RP11-43N5.1	26123	chr12:68112321:-	ONLY_REF_SPLICE	YES	15	3	0.79	0.95	0.4328	0.1583	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RP11-43N5.1->chr12:68102827-68123255:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.79	0.95	0.5911	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MDM2--TAF8	33	2	MDM2	14649	chr12:69234477:+	TAF8	33847	chr6:42045821:+	INCL_NON_REF_SPLICE	YES	628	124	0.05	0.22	0.3483	0.0211	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,TAF8->TATA-box_binding_protein_associated_factor_8,chr6:42018251-42055199:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.05	0.22	0.3694	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	2	83	USP49	3511	chr6:41859532:-	MRPS10	27697	chr6:42182082:-	ONLY_REF_SPLICE	YES	9	0	0.9	1	0.0211	0.8761	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.8972	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	4	61	USP49	3511	chr6:41859532:-	MRPS10	28922	chr6:42179655:-	ONLY_REF_SPLICE	YES	9	200	0.88	0.25	0.0422	0.6439	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.25	0.88	0.6861	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MDM2--TAF8	11	0	MDM2	14328	chr12:69234156:+	TAF8	37366	chr6:42049340:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1161	0	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,TAF8->TATA-box_binding_protein_associated_factor_8,chr6:42018251-42055199:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1161	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	1	36	USP49	9000	chr6:41839302:-	MRPS10	31168	chr6:42176685:-	ONLY_REF_SPLICE	YES	2	383	0.95	0.09	0.0106	0.38	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.09	0.95	0.3906	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	1	17	USP49	3511	chr6:41859532:-	MRPS10	30059	chr6:42178334:-	ONLY_REF_SPLICE	NO	9	247	0.67	0.07	0.0106	0.1794	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.07	0.67	0.19	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	FRS2--RP11-43N5.1	1	15	FRS2	1182	chr12:69864310:+	RP11-43N5.1	24788	chr12:68116493:-	ONLY_REF_SPLICE	YES	15	0	0.52	1	0.0106	0.1583	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RP11-43N5.1->chr12:68102827-68123255:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.52	1	0.1689	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--CAND1	3	1	RP11-123O10.4	1113	chr12:67462830:-	CAND1	7708	chr12:67675690:+	ONLY_REF_SPLICE	YES	0	106	1	0.04	0.0317	0.0106	RP11-123O10.4->chr12:67285656-67462942:-,CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	COL1A1--EIF4H	3	0	COL1A1	6825	chr17:48272950:-	EIF4H	28702	chr7:73610527:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	CSRNP2--ATP10D	3	0	CSRNP2	9609	chr12:51457039:-	ATP10D	14674	chr4:47487320:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	CSRNP2->chr12:51454990-51477447:-,cysteine_and_serine_rich_nuclear_protein_2,ATP10D->ATPase_phospholipid_transporting_10D_(putative),chr4:47487305-47595503:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	CPSF6--TNC	2	0	CPSF6	11046	chr12:69656342:+	TNC	56377	chr9:117783546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TNC->Oncogene{Bushman},chr9:117782806-117880536:-,tenascin_C	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	CYP51A1--CHMP1A	2	0	CYP51A1	11934	chr7:91746358:-	CHMP1A	22405	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CYP51A1->chr7:91741465-91772266:-,cytochrome_P450_family_51_subfamily_A_member_1,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	SPHK2--PPP1R13L	2	0	SPHK2	2263	chr19:49123810:+	PPP1R13L	23218	chr19:45889438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SPHK2->chr19:49122548-49133974:+,sphingosine_kinase_2,PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000329
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAJ5	1152	65	TRAV3	1610	chr14:22192569:+	TRAJ5	4611	chr14:23009191:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	11.7127	0.6609	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	12.3736	TRUE	1	2	0	2	2	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRGV8--HELLS	79	0	TRGV8	1587	chr7:38369950:-	HELLS	32836	chr10:96371997:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8032	0	TRGV8->T_cell_receptor_gamma_variable_8,chr7:38369944-38370536:-,HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8032	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-499F3.2--TYW1	35	0	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3559	0	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3559	TRUE	1	3	0	7	3	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAC	4	90	TRAV3	1427	chr14:22192386:+	TRAC	4610	chr14:23016447:+	INCL_NON_REF_SPLICE	YES	605	0	0.13	1	0.0407	0.9151	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.9558	TRUE	1	20	1	2	20	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAJ5	3	65	TRAV3	1608	chr14:22192567:+	TRAJ5	4609	chr14:23009189:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0.6609	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6914	TRUE	1	2	0	2	2	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAC	7	25	TRAV3	1222	chr14:22192181:+	TRAC	4610	chr14:23016447:+	ONLY_REF_SPLICE	YES	860	0	0.04	1	0.0712	0.2542	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.3254	TRUE	1	20	1	2	20	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--PCED1B-AS1	7	0	RPL23AP53	2207	chr8:180804:-	PCED1B-AS1	9973	chr12:47604520:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0712	0	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,PCED1B-AS1->PCED1B_antisense_RNA_1,chr12:47599681-47610239:-	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0712	TRUE	0	0	0	3	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAJ9--TRAV12-1	4	0	TRAJ9	1061	chr14:23004562:+	TRAV12-1	4309	chr14:22309669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	HGNC_GENEFAM,TRAJ9->T_cell_receptor_alpha_joining_9,chr14:23004502-23004562:+,TRAV12-1->T_cell_receptor_alpha_variable_12-1,chr14:22309422-22309956:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC6--SMARCA2	2	0	CCDC6	1535	chr10:61665880:-	SMARCA2	55788	chr9:2161686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,SMARCA2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_2,chr9:2015342-2193624:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--RPL22	2	0	KCNAB2	7114	chr1:6086505:+	RPL22	41694	chr1:6257816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_INVERSION:+:-:[80076],KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCK1--MSL2	2	0	NCK1	1112	chr3:136581161:+	MSL2	18208	chr3:135871580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Spleen=1},NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	2	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA6--U2AF1	2	0	NDUFA6	1350	chr22:42486610:-	U2AF1	17577	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NDUFA6->NADH:ubiquinone_oxidoreductase_subunit_A6,chr22:42481529-42486959:-,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POU2F1--RCSD1	2	0	POU2F1	1130	chr1:167190195:+	RCSD1	51671	chr1:167653137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,RCSD1->RCSD_domain_containing_1,chr1:167599330-167675486:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	2	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTDSS2--PPP1R12C	2	0	PTDSS2	8895	chr11:479152:+	PPP1R12C	28472	chr19:55607703:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	PTDSS2->chr11:448268-491393:+,phosphatidylserine_synthase_2,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRCAP--SRSF1	2	0	PTPRCAP	1451	chr11:67205088:-	SRSF1	8598	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	PTPRCAP->chr11:67202981-67205538:-,protein_tyrosine_phosphatase,_receptor_type_C_associated_protein,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--PCED1B-AS1	2	0	RPL23AP53	2207	chr8:180804:-	PCED1B-AS1	13734	chr12:47599928:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,PCED1B-AS1->PCED1B_antisense_RNA_1,chr12:47599681-47610239:-	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	2	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRRT--GINS1	2	0	SRRT	1601	chr7:100473333:+	GINS1	16460	chr20:25394426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	SRRT->chr7:100472733-100486285:+,serrate,_RNA_effector_molecule,GINS1->GINS_complex_subunit_1,chr20:25388363-25433264:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000918
LS180_LARGE_INTESTINE	RCC1--CTD-2354A18.1	14	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1823	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	LS180_LARGE_INTESTINE	1	1	0.1823	TRUE	0	1	0	7	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	SLC12A2--EIF5A	9	0	SLC12A2	1749	chr5:127420206:+	EIF5A	38654	chr17:7210988:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1172	0	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A	LS180_LARGE_INTESTINE	1	1	0.1172	TRUE	0	0	0	2	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	SLC12A2--EIF5A	5	0	SLC12A2	1511	chr5:127419968:+	EIF5A	38672	chr17:7211006:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A	LS180_LARGE_INTESTINE	1	1	0.0651	TRUE	0	0	0	2	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	ACAP2--OPCML	3	1	ACAP2	29606	chr3:195009850:-	OPCML	45665	chr11:132527214:-	ONLY_REF_SPLICE	YES	50	0	0.07	1	0.0391	0.013	ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,OPCML->Oncogene{Bushman},chr11:132284871-133402414:-,opioid_binding_protein/cell_adhesion_molecule-like	LS180_LARGE_INTESTINE	0.07	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	PHB--EEF2	3	0	PHB	5239	chr17:47486804:-	EEF2	12800	chr19:3985461:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	PHB->Oncogene{Bushman},chr17:47481414-47492246:-,prohibitin,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	LS180_LARGE_INTESTINE	1	1	0.0391	TRUE	0	0	0	2	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	AC073283.4--EPCAM	2	0	AC073283.4	1174	chr2:47572040:-	EPCAM	20907	chr2:47606092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	LS180_LARGE_INTESTINE	1	1	0.026	TRUE	0	5	0	5	2	TRUE	ACH-000957
LS180_LARGE_INTESTINE	GRTP1--LAMP1	2	0	GRTP1	1370	chr13:114018077:-	LAMP1	15130	chr13:113960800:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[518],GRTP1->chr13:113978505-114018446:-,growth_hormone_regulated_TBC_protein_1,LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1	LS180_LARGE_INTESTINE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	RCC1--CTD-2354A18.1	2	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21772	chr18:70999700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	LS180_LARGE_INTESTINE	1	1	0.026	TRUE	0	1	0	7	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	TRAF2--MRPL11	2	0	TRAF2	11938	chr9:139804446:+	MRPL11	24761	chr11:66205730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,MRPL11->chr11:66202546-66234209:-,mitochondrial_ribosomal_protein_L11	LS180_LARGE_INTESTINE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	ZNF133--CSRP2BP	2	0	ZNF133	1128	chr20:18269248:+	CSRP2BP	23630	chr20:18162354:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx&tcga_normals:1/3694=0.03%,ZNF133->chr20:18269121-18297640:+,zinc_finger_protein_133,CSRP2BP->Oncogene{Bushman},chr20:18118762-18169031:+	LS180_LARGE_INTESTINE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000957
RT4_URINARY_TRACT	FGFR3--TACC3	437	530	FGFR3	9864	chr4:1808661:+	TACC3	18250	chr4:1729704:+	INCL_NON_REF_SPLICE	YES	470	331	0.67	0.74	4.3616	5.2899	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	RT4_URINARY_TRACT	0.67	0.74	9.6515	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	GPR110--TNFRSF21	175	207	GPR110	7908	chr6:46988467:-	TNFRSF21	31544	chr6:47252168:-	ONLY_REF_SPLICE	YES	395	2326	0.49	0.14	1.7467	2.066	{Klijn_CCL:Stomach=1},GPR110->chr6:46965440-47010099:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	RT4_URINARY_TRACT	0.14	0.49	3.8127	TRUE	0	0	0	2	0	TRUE	ACH-000242
RT4_URINARY_TRACT	FGFR3--TACC3	92	530	FGFR3	9864	chr4:1808661:+	TACC3	18254	chr4:1729708:+	INCL_NON_REF_SPLICE	YES	470	319	0.57	0.66	0.9182	5.2899	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	RT4_URINARY_TRACT	0.57	0.66	6.2081	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	GPR110--TNFRSF21	28	169	GPR110	6849	chr6:46989694:-	TNFRSF21	31544	chr6:47252168:-	ONLY_REF_SPLICE	YES	386	2326	0.34	0.08	0.2795	1.6868	{Klijn_CCL:Stomach=1},GPR110->chr6:46965440-47010099:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	RT4_URINARY_TRACT	0.08	0.34	1.9663	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	GPR110--TNFRSF21	22	155	GPR110	7908	chr6:46988467:-	TNFRSF21	31584	chr6:47252128:-	INCL_NON_REF_SPLICE	YES	395	1888	0.31	0.09	0.2196	1.547	{Klijn_CCL:Stomach=1},GPR110->chr6:46965440-47010099:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	RT4_URINARY_TRACT	0.09	0.31	1.7666	TRUE	0	0	0	2	0	TRUE	ACH-000242
RT4_URINARY_TRACT	CCDC12--SETD2	42	12	CCDC12	3571	chr3:47018127:-	SETD2	37646	chr3:47103836:-	ONLY_REF_SPLICE	YES	124	121	0.3	0.31	0.4192	0.1198	LOCAL_REARRANGEMENT:-:[34419],CCDC12->chr3:46963216-47023500:-,coiled-coil_domain_containing_12,SETD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SET_domain_containing_2,chr3:47057919-47205457:-	RT4_URINARY_TRACT	0.3	0.31	0.539	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	S100A6--S100A2	38	0	S100A6	1949	chr1:153507772:-	S100A2	9347	chr1:153536306:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3793	0	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[24864],S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-,S100A2->S100_calcium_binding_protein_A2,chr1:153533584-153540366:-	RT4_URINARY_TRACT	1	1	0.3793	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	CORO7--POLR3K	24	18	CORO7	14420	chr16:4437987:-	POLR3K	32278	chr16:97557:-	ONLY_REF_SPLICE	YES	71	334	0.37	0.11	0.2395	0.1797	CORO7->chr16:4404543-4475706:-,coronin_7,POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K	RT4_URINARY_TRACT	0.11	0.37	0.4192	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	GPR110--TNFRSF21	1	93	GPR110	5748	chr6:46991780:-	TNFRSF21	31544	chr6:47252168:-	ONLY_REF_SPLICE	YES	514	2326	0.15	0.04	0.01	0.9282	{Klijn_CCL:Stomach=1},GPR110->chr6:46965440-47010099:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	RT4_URINARY_TRACT	0.04	0.15	0.9382	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	CORO7--POLR3K	3	18	CORO7	14440	chr16:4437967:-	POLR3K	32278	chr16:97557:-	INCL_NON_REF_SPLICE	YES	71	334	0.23	0.06	0.0299	0.1797	CORO7->chr16:4404543-4475706:-,coronin_7,POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K	RT4_URINARY_TRACT	0.06	0.23	0.2096	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	NPM1P4--NCL	7	0	NPM1P4	1488	chr13:28270854:-	NCL	10594	chr2:232325482:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	RT4_URINARY_TRACT	1	1	0.0699	TRUE	0	0	0	3	0	TRUE	ACH-000242
RT4_URINARY_TRACT	NPM1P4--NCL	6	0	NPM1P4	1488	chr13:28270854:-	NCL	10591	chr2:232325485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	RT4_URINARY_TRACT	1	1	0.0599	TRUE	0	0	0	3	0	TRUE	ACH-000242
RT4_URINARY_TRACT	NPM1P4--NCL	5	0	NPM1P4	1488	chr13:28270854:-	NCL	10603	chr2:232325473:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	RT4_URINARY_TRACT	1	1	0.0499	TRUE	0	0	0	3	0	TRUE	ACH-000242
RT4_URINARY_TRACT	CCDC43--GPATCH8	4	2	CCDC43	2318	chr17:42761240:-	GPATCH8	12961	chr17:42552271:-	ONLY_REF_SPLICE	YES	96	3	0.06	0.67	0.0399	0.02	CCDC43->chr17:42750437-42767147:-,coiled-coil_domain_containing_43,GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-	RT4_URINARY_TRACT	0.06	0.67	0.0599	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	TBC1D8--RFX8	4	1	TBC1D8	1105	chr2:101869224:-	RFX8	37773	chr2:102038934:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0.01	TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,RFX8->RFX_family_member_8,_lacking_RFX_DNA_binding_domain,chr2:102013823-102091165:-	RT4_URINARY_TRACT	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	NPM1P4--NCL	4	0	NPM1P4	1490	chr13:28270852:-	NCL	10584	chr2:232325492:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	RT4_URINARY_TRACT	1	1	0.0399	TRUE	0	0	0	3	0	TRUE	ACH-000242
RT4_URINARY_TRACT	NPM1P4--NCL	4	0	NPM1P4	1491	chr13:28270851:-	NCL	9660	chr2:232326416:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	RT4_URINARY_TRACT	1	1	0.0399	TRUE	0	0	0	3	0	TRUE	ACH-000242
RT4_URINARY_TRACT	TOMM40L--NDUFS2	4	0	TOMM40L	1134	chr1:161195926:+	NDUFS2	19348	chr1:161183439:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	LOCAL_REARRANGEMENT:+:[11608],TOMM40L->chr1:161195793-161200408:+,translocase_of_outer_mitochondrial_membrane_40_like,NDUFS2->NADH:ubiquinone_oxidoreductase_core_subunit_S2,chr1:161166894-161184185:+	RT4_URINARY_TRACT	1	1	0.0399	TRUE	0	2	0	2	0	TRUE	ACH-000242
RT4_URINARY_TRACT	NPM1P4--NCL	3	0	NPM1P4	1484	chr13:28270858:-	NCL	10584	chr2:232325492:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	RT4_URINARY_TRACT	1	1	0.0299	TRUE	0	0	0	3	0	TRUE	ACH-000242
RT4_URINARY_TRACT	ALG11--RPL41	2	0	ALG11	1065	chr13:52586598:+	RPL41	13201	chr12:56510559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	ALG11->ALG11,_alpha-1,2-mannosyltransferase,chr13:52586534-52603800:+,RPL41->chr12:56510370-56511727:+,ribosomal_protein_L41	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	CPSF6--SRSF4	2	0	CPSF6	11046	chr12:69656342:+	SRSF4	24442	chr1:29487029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	LYPD6B--ASS1	2	0	LYPD6B	1695	chr2:149895315:+	ASS1	27909	chr9:133327611:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	LYPD6B->LY6/PLAUR_domain_containing_6B,chr2:149894621-150071776:+,ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	PRIMPOL--SEPT9	2	0	PRIMPOL	2374	chr4:185573254:+	SEPT9	47858	chr17:75478226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	PRIMPOL->chr4:185570767-185616117:+,primase_and_DNA_directed_polymerase,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	STAG3L5P--SLC23A2	2	0	STAG3L5P	1531	chr7:99934232:+	SLC23A2	25639	chr20:4850699:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	STAG3L5P->chr7:99933702-99949523:+,stromal_antigen_3-like_5_pseudogene,SLC23A2->chr20:4833002-4990939:-,solute_carrier_family_23_member_2	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	TBCD--FGD5-AS1	2	0	TBCD	15597	chr17:80816543:+	FGD5-AS1	57137	chr3:14987661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D,FGD5-AS1->FGD5_antisense_RNA_1,chr3:14961854-14989931:-	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	RP4-535B20.1--ZBTB18	1	1	RP4-535B20.1	1134	chr1:65533287:-	ZBTB18	6274	chr1:244217090:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.01	0.01	RP4-535B20.1->chr1:65532310-65533420:-,ZBTB18->chr1:244214585-244220778:+,zinc_finger_and_BTB_domain_containing_18	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
UOK101_KIDNEY	AXL--CEACAM19	69	139	AXL	6344	chr19:41737203:+	CEACAM19	31606	chr19:45182125:+	ONLY_REF_SPLICE	YES	199	29	0.51	0.88	0.8161	1.644	HGNC_GENEFAM,AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	UOK101_KIDNEY	0.51	0.88	2.4601	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	AXL--CEACAM19	53	109	AXL	6344	chr19:41737203:+	CEACAM19	32690	chr19:45183560:+	ONLY_REF_SPLICE	YES	199	39	0.45	0.81	0.6268	1.2891	HGNC_GENEFAM,AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	UOK101_KIDNEY	0.45	0.81	1.9159	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	MDM2--IL26	46	35	MDM2	12225	chr12:69230529:+	IL26	24060	chr12:68595863:-	ONLY_REF_SPLICE	YES	734	0	0.1	1	0.544	0.4139	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,IL26->chr12:68595131-68619601:-,interleukin_26	UOK101_KIDNEY	0.1	1	0.9579	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	PTEN--KCTD7	38	25	PTEN	4898	chr10:89653866:+	KCTD7	25547	chr7:66103240:+	ONLY_REF_SPLICE	YES	83	33	0.43	0.66	0.4494	0.2957	PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog,KCTD7->chr7:66093868-66276446:+,potassium_channel_tetramerization_domain_containing_7	UOK101_KIDNEY	0.43	0.66	0.7451	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	ANP32B--APP	12	0	ANP32B	6936	chr9:100767435:+	APP	24379	chr21:27394302:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1419	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	UOK101_KIDNEY	1	1	0.1419	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	AXL--CEACAM19	2	38	AXL	6344	chr19:41737203:+	CEACAM19	34715	chr19:45185839:+	ONLY_REF_SPLICE	YES	199	90	0.17	0.31	0.0237	0.4494	HGNC_GENEFAM,AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	UOK101_KIDNEY	0.17	0.31	0.4731	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	AXL--CEACAM19	1	30	AXL	3854	chr19:41727961:+	CEACAM19	31606	chr19:45182125:+	ONLY_REF_SPLICE	NO	305	29	0.09	0.52	0.0118	0.3548	HGNC_GENEFAM,AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	UOK101_KIDNEY	0.09	0.52	0.3666	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	COL1A1--COL7A1	5	0	COL1A1	14913	chr17:48264862:-	COL7A1	50547	chr3:48603986:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	UOK101_KIDNEY	1	1	0.0591	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	FN1--PKM	4	0	FN1	5747	chr2:216295556:-	PKM	65445	chr15:72501158:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	UOK101_KIDNEY	1	1	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	FN1--PKM	4	0	FN1	5768	chr2:216295535:-	PKM	65468	chr15:72501135:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	UOK101_KIDNEY	1	1	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	PRPF19--MXRA8	3	0	PRPF19	4335	chr11:60670223:-	MXRA8	19772	chr1:1288730:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	PRPF19->chr11:60658202-60674060:-,pre-mRNA_processing_factor_19,MXRA8->chr1:1288069-1297157:-,matrix-remodelling_associated_8	UOK101_KIDNEY	1	1	0.0355	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	AC024560.3--TDP1	2	0	AC024560.3	9962	chr3:197340096:-	TDP1	27383	chr14:90437519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	AC024560.3->chr3:197305084-197354777:-,TDP1->chr14:90421283-90511106:+,tyrosyl-DNA_phosphodiesterase_1	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	B2M--TPM1	2	0	B2M	1137	chr15:45003811:+	TPM1	16378	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	UOK101_KIDNEY	1	1	0.0237	TRUE	0	1	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	C11orf84--GANAB	2	0	C11orf84	1426	chr11:63581285:+	GANAB	13354	chr11:62402472:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	C11orf84->chr11:63580860-63595190:+,chromosome_11_open_reading_frame_84,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	CCDC23--FAM192A	2	0	CCDC23	1853	chr1:43282102:-	FAM192A	13789	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	CCDC23->chr1:43272723-43282954:-,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	CEP72--TRIP13	2	0	CEP72	1172	chr5:612558:+	TRIP13	31374	chr5:907245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	CEP72->centrosomal_protein_72,chr5:612387-667283:+,TRIP13->chr5:892758-919472:+,thyroid_hormone_receptor_interactor_13	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	CLN5--LRCH1	2	0	CLN5	2612	chr13:77566406:+	LRCH1	29332	chr13:47297356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	CLN5->ceroid-lipofuscinosis,_neuronal_5,chr13:77564795-77576652:+,LRCH1->chr13:47127303-47327175:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_1	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	CYFIP1--SNRPN	2	0	CYFIP1	1777	chr15:22892781:+	SNRPN	47943	chr15:25207261:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Artery_-_Aorta=1},CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1,SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	FAM13A--MAPK10	2	0	FAM13A	2765	chr4:89978089:-	MAPK10	53647	chr4:87275797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},FAM13A->chr4:89647106-90032549:-,family_with_sequence_similarity_13_member_A,MAPK10->Oncogene{Bushman},chr4:86936276-87515284:-,mitogen-activated_protein_kinase_10	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	FOCAD--MLLT3	2	0	FOCAD	19933	chr9:20823114:+	MLLT3	74224	chr9:20365742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_INVERSION:+:-:[35766],FOCAD->chr9:20658308-20995954:+,focadhesin,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	GALNT2--C1orf198	2	0	GALNT2	2488	chr1:230203153:+	C1orf198	28787	chr1:230991464:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	{Klijn_CCL:Kidney=1},GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2,C1orf198->chr1:230972865-231005335:-,chromosome_1_open_reading_frame_198	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	3	0	TRUE	ACH-000262
UOK101_KIDNEY	RAPGEF1--RBCK1	2	0	RAPGEF1	13935	chr9:134497183:-	RBCK1	39457	chr20:398170:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-,RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	RIPK4--HSF2BP	2	0	RIPK4	1247	chr21:43187020:-	HSF2BP	23615	chr21:45012209:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	RIPK4->chr21:43159529-43187266:-,receptor_interacting_serine/threonine_kinase_4,HSF2BP->chr21:44949072-45079374:-,heat_shock_transcription_factor_2_binding_protein	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	SERGEF--NAV2	2	0	SERGEF	1312	chr11:18034398:-	NAV2	50283	chr11:20057505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	SERGEF->chr11:17809595-18034709:-,secretion_regulating_guanine_nucleotide_exchange_factor,NAV2->chr11:19372271-20143144:+,neuron_navigator_2	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	TBC1D8--SEPT11	2	0	TBC1D8	22555	chr2:101643845:-	SEPT11	37088	chr4:77916934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,SEPT11->chr4:77870856-77961537:+,septin_11	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	ZFAS1--HSPBAP1	2	0	ZFAS1	2031	chr20:47895745:+	HSPBAP1	20772	chr3:122459960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,HSPBAP1->HSPB1_associated_protein_1,Oncogene{Bushman},chr3:122458846-122512671:-	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	ZNF451--FAM101A	2	0	ZNF451	2330	chr6:56955072:+	FAM101A	38911	chr12:124458433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451,FAM101A->chr12:124457788-124800570:+,family_with_sequence_similarity_101_member_A	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	TASP1--RP5-1069C8.2	1	1	TASP1	21244	chr20:13296617:-	RP5-1069C8.2	29257	chr20:12921584:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0118	0.0118	TASP1->chr20:13246709-13619587:-,taspase_1,RP5-1069C8.2->chr20:12845850-12933167:-	UOK101_KIDNEY	1	1	0.0236	TRUE	1	0	0	3	0	TRUE	ACH-000262
HCC1395_BREAST	EIF3K--CYP39A1	234	89	EIF3K	8744	chr19:39123318:+	CYP39A1	17303	chr6:46607405:-	ONLY_REF_SPLICE	YES	188	27	0.63	0.92	2.7481	1.0452	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1	HCC1395_BREAST	0.63	0.92	3.7933	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	PLA2R1--RBMS1	105	34	PLA2R1	18312	chr2:160832579:-	RBMS1	50471	chr2:161159998:-	ONLY_REF_SPLICE	YES	12	91	0.92	0.6	1.2331	0.3993	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},PLA2R1->chr2:160788519-160919121:-,phospholipase_A2_receptor_1,RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-	HCC1395_BREAST	0.6	0.92	1.6324	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	RAB7A--LRCH3	56	51	RAB7A	1238	chr3:128445202:+	LRCH3	30748	chr3:197592294:+	ONLY_REF_SPLICE	YES	710	12	0.13	0.9	0.6577	0.5989	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,LRCH3->chr3:197518097-197615307:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_3	HCC1395_BREAST	0.13	0.9	1.2566	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	TMEM104--RAB37	61	17	TMEM104	7995	chr17:72791771:+	RAB37	19024	chr17:72725395:+	ONLY_REF_SPLICE	YES	32	0	0.71	1	0.7164	0.1996	LOCAL_REARRANGEMENT:+:[29148],TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,RAB37->RAB37,_member_RAS_oncogene_family,chr17:72666717-72743474:+	HCC1395_BREAST	0.71	1	0.916	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	EIF3K--CYP39A1	38	55	EIF3K	8744	chr19:39123318:+	CYP39A1	17363	chr6:46607345:-	INCL_NON_REF_SPLICE	YES	188	21	0.33	0.82	0.4463	0.6459	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1	HCC1395_BREAST	0.33	0.82	1.0922	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	EIF3K--CYP39A1	5	89	EIF3K	8744	chr19:39123318:+	CYP39A1	17287	chr6:46607421:-	INCL_NON_REF_SPLICE	YES	188	29	0.33	0.76	0.0587	1.0452	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1	HCC1395_BREAST	0.33	0.76	1.1039	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	MDH1--RP11-357C3.3	24	6	MDH1	9656	chr2:63826426:+	RP11-357C3.3	27403	chrX:62619783:-	ONLY_REF_SPLICE	YES	287	0	0.09	1	0.2819	0.0705	MDH1->chr2:63815743-63834331:+,malate_dehydrogenase_1,RP11-357C3.3->chrX:62563106-62780951:-	HCC1395_BREAST	0.09	1	0.3524	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	PRRC2B--FUBP3	24	0	PRRC2B	1171	chr9:134269650:+	FUBP3	46698	chr9:133485341:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2819	0	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	HCC1395_BREAST	1	1	0.2819	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	E2F3--PKD2	22	6	E2F3	2489	chr6:20404063:+	PKD2	18706	chr4:88957372:+	ONLY_REF_SPLICE	YES	17	11	0.62	0.72	0.2584	0.0705	E2F3->E2F_transcription_factor_3,Oncogene{Bushman},chr6:20402398-20493941:+,PKD2->chr4:88928820-88998929:+,polycystin_2,_transient_receptor_potential_cation_channel	HCC1395_BREAST	0.62	0.72	0.3289	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	MFSD3--MROH1	19	15	MFSD3	2830	chr8:145736286:+	MROH1	16924	chr8:145254025:+	ONLY_REF_SPLICE	YES	93	78	0.27	0.3	0.2231	0.1762	MFSD3->chr8:145734457-145736596:+,major_facilitator_superfamily_domain_containing_3,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	HCC1395_BREAST	0.27	0.3	0.3993	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	GNA12--CARD11	18	8	GNA12	1472	chr7:2883487:-	CARD11	19146	chr7:2998265:-	ONLY_REF_SPLICE	YES	76	0	0.25	1	0.2114	0.094	LOCAL_REARRANGEMENT:-:[61817],GNA12->G_protein_subunit_alpha_12,Oncogene{Bushman},chr7:2767746-2883958:-,CARD11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},caspase_recruitment_domain_family_member_11,chr7:2945775-3083579:-	HCC1395_BREAST	0.25	1	0.3054	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	EIF3K--CYP39A1	2	48	EIF3K	8562	chr19:39123136:+	CYP39A1	17303	chr6:46607405:-	ONLY_REF_SPLICE	YES	382	27	0.12	0.65	0.0235	0.5637	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1	HCC1395_BREAST	0.12	0.65	0.5872	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	UNC5C--RP11-681L8.1	13	1	UNC5C	4943	chr4:96199410:-	RP11-681L8.1	33527	chr4:98313879:-	ONLY_REF_SPLICE	YES	13	0	0.52	1	0.1527	0.0117	UNC5C->chr4:96083655-96470357:-,unc-5_netrin_receptor_C,RP11-681L8.1->chr4:98255786-98554974:-	HCC1395_BREAST	0.52	1	0.1644	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	ZNF646--CTF1	12	3	ZNF646	6829	chr16:31091711:+	CTF1	17015	chr16:30914597:+	INCL_NON_REF_SPLICE	YES	33	0	0.31	1	0.1409	0.0352	ZNF646->chr16:31085743-31095517:+,zinc_finger_protein_646,CTF1->cardiotrophin_1,chr16:30907928-30914881:+	HCC1395_BREAST	0.31	1	0.1761	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	EFTUD2--KIF18B	9	12	EFTUD2	19105	chr17:42942298:-	KIF18B	41271	chr17:43006392:-	ONLY_REF_SPLICE	YES	119	83	0.15	0.2	0.1057	0.1409	LOCAL_REARRANGEMENT:-:[25047],EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,KIF18B->chr17:43002077-43025082:-,kinesin_family_member_18B	HCC1395_BREAST	0.15	0.2	0.2466	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	TBC1D16--AC012354.6	10	8	TBC1D16	3895	chr17:77983959:-	AC012354.6	30505	chr2:45193557:+	ONLY_REF_SPLICE	YES	55	0	0.25	1	0.1174	0.094	TBC1D16->TBC1_domain_family_member_16,chr17:77906142-78009647:-,AC012354.6->chr2:45181803-45195901:+	HCC1395_BREAST	0.25	1	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	KPNA1--EEFSEC	10	2	KPNA1	12938	chr3:122168421:-	EEFSEC	27410	chr3:127965679:+	ONLY_REF_SPLICE	YES	20	18	0.38	0.4	0.1174	0.0235	KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1,EEFSEC->chr3:127872297-128127485:+,eukaryotic_elongation_factor,_selenocysteine-tRNA-specific	HCC1395_BREAST	0.38	0.4	0.1409	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	EIF3K--CYP39A1	2	28	EIF3K	4528	chr19:39116742:+	CYP39A1	17303	chr6:46607405:-	ONLY_REF_SPLICE	YES	472	27	0.06	0.53	0.0235	0.3288	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1	HCC1395_BREAST	0.06	0.53	0.3523	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	RNGTT--RPF1	9	0	RNGTT	10414	chr6:89559474:-	RPF1	24168	chr1:84946639:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1057	0	RNGTT->RNA_guanylyltransferase_and_5'-phosphatase,chr6:89319985-89673348:-,RPF1->chr1:84944942-84963473:+,ribosome_production_factor_1_homolog	HCC1395_BREAST	1	1	0.1057	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	FOSL2--BRE	8	2	FOSL2	2375	chr2:28616689:+	BRE	27186	chr2:28460069:+	ONLY_REF_SPLICE	YES	57	43	0.15	0.19	0.094	0.0235	GTEx_FI:{Blood=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[53547],FOSL2->FOS_like_2,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr2:28615315-28640179:+,BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+	HCC1395_BREAST	0.15	0.19	0.1175	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	TBC1D16--AC012354.6	7	3	TBC1D16	3895	chr17:77983959:-	AC012354.6	31783	chr2:45194835:+	INCL_NON_REF_SPLICE	YES	55	4	0.15	0.71	0.0822	0.0352	TBC1D16->TBC1_domain_family_member_16,chr17:77906142-78009647:-,AC012354.6->chr2:45181803-45195901:+	HCC1395_BREAST	0.15	0.71	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	E2F3--PKD2	5	8	E2F3	2489	chr6:20404063:+	PKD2	18622	chr4:88957288:+	ONLY_REF_SPLICE	YES	17	12	0.43	0.52	0.0587	0.094	E2F3->E2F_transcription_factor_3,Oncogene{Bushman},chr6:20402398-20493941:+,PKD2->chr4:88928820-88998929:+,polycystin_2,_transient_receptor_potential_cation_channel	HCC1395_BREAST	0.43	0.52	0.1527	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	LMF1--FOXK2	6	3	LMF1	2386	chr16:1020788:-	FOXK2	44063	chr17:80559179:+	ONLY_REF_SPLICE	YES	25	115	0.26	0.07	0.0705	0.0352	LMF1->Oncogene{Bushman},chr16:903634-1031318:-,lipase_maturation_factor_1,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	HCC1395_BREAST	0.07	0.26	0.1057	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	OSBPL9--RP11-191G24.1	6	3	OSBPL9	8120	chr1:52179751:+	RP11-191G24.1	39734	chr1:52026554:+	ONLY_REF_SPLICE	YES	69	0	0.12	1	0.0705	0.0352	LOCAL_REARRANGEMENT:+:[15550],OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,RP11-191G24.1->chr1:51983981-52027301:+	HCC1395_BREAST	0.12	1	0.1057	TRUE	0	0	0	2	0	TRUE	ACH-000699
HCC1395_BREAST	RP11-83A24.2--KCNQ5	6	3	RP11-83A24.2	1350	chr4:140374839:-	KCNQ5	32163	chr6:73900296:+	ONLY_REF_SPLICE	YES	3	4	0.75	0.69	0.0705	0.0352	RP11-83A24.2->chr4:140333081-140375188:-,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	HCC1395_BREAST	0.69	0.75	0.1057	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	UNC5C--STPG2	5	1	UNC5C	4943	chr4:96199410:-	STPG2	46048	chr4:98162249:-	ONLY_REF_SPLICE	YES	13	0	0.32	1	0.0587	0.0117	UNC5C->chr4:96083655-96470357:-,unc-5_netrin_receptor_C,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	HCC1395_BREAST	0.32	1	0.0704	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	CEP250--FBXO36	4	0	CEP250	1074	chr20:34043058:+	FBXO36	44741	chr2:230875412:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.047	0	CEP250->centrosomal_protein_250,chr20:34042985-34099804:+,FBXO36->F-box_protein_36,chr2:230787018-230877825:+	HCC1395_BREAST	1	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	LTBP1--BIRC6	4	0	LTBP1	4216	chr2:33246273:+	BIRC6	53499	chr2:32631567:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.047	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Heart_-_Atrial_Appendage=1},YOSHIHARA_TCGA_num_samples[BRCA:1|LAML:1],LTBP1->chr2:33172039-33624576:+,latent_transforming_growth_factor_beta_binding_protein_1,BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+	HCC1395_BREAST	1	1	0.047	TRUE	0	5	0	1	5	TRUE	ACH-000699
HCC1395_BREAST	POU2F1--NME7	3	4	POU2F1	28816	chr1:167385422:+	NME7	62405	chr1:169102055:-	INCL_NON_REF_SPLICE	YES	4	9	0.64	0.44	0.0352	0.047	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-	HCC1395_BREAST	0.44	0.64	0.0822	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	CEP250--FBXO36	3	0	CEP250	1079	chr20:34043063:+	FBXO36	44741	chr2:230875412:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	CEP250->centrosomal_protein_250,chr20:34042985-34099804:+,FBXO36->F-box_protein_36,chr2:230787018-230877825:+	HCC1395_BREAST	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	FTH1--GNB2L1	3	0	FTH1	1228	chr11:61734905:-	GNB2L1	10551	chr5:180670807:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-	HCC1395_BREAST	1	1	0.0352	TRUE	0	0	0	2	0	TRUE	ACH-000699
HCC1395_BREAST	PRRC2B--FUBP3	3	0	PRRC2B	1171	chr9:134269650:+	FUBP3	46701	chr9:133485344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	HCC1395_BREAST	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	EEFSEC--KPNA1	2	2	EEFSEC	1370	chr3:127872666:+	KPNA1	16100	chr3:122186276:-	ONLY_REF_SPLICE	YES	24	33	0.14	0.11	0.0235	0.0235	EEFSEC->chr3:127872297-128127485:+,eukaryotic_elongation_factor,_selenocysteine-tRNA-specific,KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1	HCC1395_BREAST	0.11	0.14	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	POU2F1--NME7	2	1	POU2F1	27130	chr1:167382351:+	NME7	62405	chr1:169102055:-	ONLY_REF_SPLICE	YES	6	9	0.33	0.25	0.0235	0.0117	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-	HCC1395_BREAST	0.25	0.33	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	APP--UQCRFS1	2	0	APP	6383	chr21:27462259:-	UQCRFS1	33813	chr19:29699065:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,UQCRFS1->chr19:29698173-29704448:-,ubiquinol-cytochrome_c_reductase,_Rieske_iron-sulfur_polypeptide_1	HCC1395_BREAST	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	ARID1B--WTAP	2	0	ARID1B	3738	chr6:157150555:+	WTAP	44901	chr6:160160022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,WTAP->Wilms_tumor_1_associated_protein,chr6:160146617-160177351:+	HCC1395_BREAST	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	NANS--ANP32B	2	0	NANS	2418	chr9:100823279:+	ANP32B	15934	chr9:100756913:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	LOCAL_REARRANGEMENT:+:[40796],NANS->N-acetylneuraminate_synthase,chr9:100819021-100845357:+,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	HCC1395_BREAST	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	PIPOX--SUPT6H	2	0	PIPOX	1182	chr17:27277712:+	SUPT6H	41930	chr17:27022370:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	PIPOX->chr17:27277531-27384234:+,pipecolic_acid_and_sarcosine_oxidase,SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+	HCC1395_BREAST	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	SPRED2--GTF2F2	2	0	SPRED2	1676	chr2:65659096:-	GTF2F2	28272	chr13:45857577:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	SPRED2->chr2:65537985-65659771:-,sprouty_related_EVH1_domain_containing_2,GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2	HCC1395_BREAST	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	TMSB10--ARHGAP29	2	0	TMSB10	1094	chr2:85132842:+	ARHGAP29	7324	chr1:94697199:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	HCC1395_BREAST	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000699
U87MG_CENTRAL_NERVOUS_SYSTEM	SPAG7--CAMTA2	80	18	SPAG7	1153	chr17:4871015:-	CAMTA2	12175	chr17:4886338:-	ONLY_REF_SPLICE	YES	59	44	0.62	0.69	0.9312	0.2095	YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[120],SPAG7->chr17:4862521-4871167:-,sperm_associated_antigen_7,CAMTA2->calmodulin_binding_transcription_activator_2,chr17:4871287-4890960:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0.62	0.69	1.1407	TRUE	0	2	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	EFEMP2--RP11-905K4.1	55	15	EFEMP2	3436	chr11:65638628:-	RP11-905K4.1	13289	chr18:33532000:-	ONLY_REF_SPLICE	YES	137	1	0.34	0.99	0.6402	0.1746	EFEMP2->EGF_containing_fibulin-like_extracellular_matrix_protein_2,chr11:65633912-65641063:-,RP11-905K4.1->chr18:33531766-33546081:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0.34	0.99	0.8148	TRUE	0	2	1	1	2	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	IL4R--KIAA0556	14	19	IL4R	15911	chr16:27367228:+	KIAA0556	34032	chr16:27689050:+	ONLY_REF_SPLICE	YES	2	11	0.94	0.75	0.163	0.2212	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.75	0.94	0.3842	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	IL4R--KIAA0556	11	16	IL4R	13086	chr16:27364017:+	KIAA0556	34032	chr16:27689050:+	ONLY_REF_SPLICE	YES	2	11	0.93	0.71	0.128	0.1862	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.71	0.93	0.3142	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	14	0	PPP1R13L	1058	chr19:45909550:-	ZNF541	31054	chr19:48024911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.163	0	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.163	TRUE	0	0	1	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	14	0	PPP1R13L	1058	chr19:45909550:-	ZNF541	30714	chr19:48025251:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.163	0	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.163	TRUE	0	0	1	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	SACS--SGCG	13	0	SACS	1088	chr13:24007754:-	SGCG	37487	chr13:23894776:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1513	0	LOCAL_INVERSION:-:+:[3661],SACS->chr13:23902965-24007841:-,sacsin_molecular_chaperone,SGCG->chr13:23755091-23899304:+,sarcoglycan_gamma	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1513	TRUE	0	1	0	1	1	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	TAF5L--C1orf95	12	4	TAF5L	3597	chr1:229745853:-	C1orf95	17617	chr1:226784503:+	ONLY_REF_SPLICE	YES	32	0	0.33	1	0.1397	0.0466	TAF5L->TATA-box_binding_protein_associated_factor_5_like,chr1:229728858-229761794:-,C1orf95->chr1:226736501-226796915:+,chromosome_1_open_reading_frame_95	U87MG_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.1863	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	IL4R--KIAA0556	10	7	IL4R	11929	chr16:27357939:+	KIAA0556	34032	chr16:27689050:+	ONLY_REF_SPLICE	YES	11	11	0.61	0.61	0.1164	0.0815	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.61	0.61	0.1979	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	8	4	PPP1R13L	2141	chr19:45908257:-	ZNF541	27907	chr19:48035002:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0931	0.0466	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1397	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	ST3GAL2--COG4	7	0	ST3GAL2	1289	chr16:70472852:-	COG4	32880	chr16:70517872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0815	0	LOCAL_REARRANGEMENT:-:[41331],ST3GAL2->ST3_beta-galactoside_alpha-2,3-sialyltransferase_2,chr16:70413338-70473140:-,COG4->chr16:70514471-70557468:-,component_of_oligomeric_golgi_complex_4	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	BBC3--FCGRT	5	6	BBC3	5388	chr19:47729834:-	FCGRT	13859	chr19:50017139:+	INCL_NON_REF_SPLICE	YES	4	20	0.73	0.35	0.0582	0.0698	BBC3->BCL2_binding_component_3,Oncogene{Bushman},chr19:47724081-47736023:-,FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.35	0.73	0.128	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	SPAG7--CAMTA2	1	19	SPAG7	2472	chr17:4869696:-	CAMTA2	12175	chr17:4886338:-	ONLY_REF_SPLICE	YES	85	44	0.19	0.31	0.0116	0.2212	YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[120],SPAG7->chr17:4862521-4871167:-,sperm_associated_antigen_7,CAMTA2->calmodulin_binding_transcription_activator_2,chr17:4871287-4890960:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0.19	0.31	0.2328	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	SACS--SGCG	5	0	SACS	1088	chr13:24007754:-	SGCG	38611	chr13:23898507:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0582	0	LOCAL_INVERSION:-:+:[3661],SACS->chr13:23902965-24007841:-,sacsin_molecular_chaperone,SGCG->chr13:23755091-23899304:+,sarcoglycan_gamma	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	BBC3--FCGRT	3	7	BBC3	5408	chr19:47729814:-	FCGRT	13857	chr19:50017137:+	INCL_NON_REF_SPLICE	YES	5	21	0.67	0.32	0.0349	0.0815	BBC3->BCL2_binding_component_3,Oncogene{Bushman},chr19:47724081-47736023:-,FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.32	0.67	0.1164	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	4	3	PPP1R13L	2141	chr19:45908257:-	ZNF541	30714	chr19:48025251:-	ONLY_REF_SPLICE	YES	0	3	1	0.7	0.0466	0.0349	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	0.7	1	0.0815	TRUE	0	1	0	1	1	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	DCAF6--IGSF8	4	2	DCAF6	3532	chr1:167921099:+	IGSF8	34353	chr1:160065036:-	ONLY_REF_SPLICE	YES	38	79	0.14	0.07	0.0466	0.0233	DCAF6->DDB1_and_CUL4_associated_factor_6,chr1:167905021-168045081:+,IGSF8->Oncogene{Bushman},chr1:160061130-160068733:-,immunoglobulin_superfamily_member_8	U87MG_CENTRAL_NERVOUS_SYSTEM	0.07	0.14	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	JSRP1--RP11-742N3.1	4	1	JSRP1	1210	chr19:2269549:-	RP11-742N3.1	10417	chr11:82400581:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0.0116	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RP11-742N3.1->chr11:82400571-82400944:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	JSRP1--RP11-742N3.1	4	1	JSRP1	1225	chr19:2269534:-	RP11-742N3.1	10430	chr11:82400594:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0.0116	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RP11-742N3.1->chr11:82400571-82400944:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	SFPQ--ACTB	4	0	SFPQ	1338	chr1:35658412:-	ACTB	22349	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	GTEx&tcga_normals:1/3694=0.03%,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0466	TRUE	0	0	0	3	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	VIM--FTH1	4	0	VIM	2083	chr10:17271340:+	FTH1	12349	chr11:61734988:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0466	TRUE	0	0	0	6	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	JSRP1--RP11-742N3.1	3	1	JSRP1	1213	chr19:2269546:-	RP11-742N3.1	10417	chr11:82400581:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.0116	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RP11-742N3.1->chr11:82400571-82400944:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	JSRP1--RP11-742N3.1	3	1	JSRP1	5938	chr19:2253719:-	RP11-742N3.1	10419	chr11:82400583:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.0116	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RP11-742N3.1->chr11:82400571-82400944:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	3	0	PPP1R13L	1058	chr19:45909550:-	ZNF541	27907	chr19:48035002:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	2	4	PPP1R13L	2141	chr19:45908257:-	ZNF541	27382	chr19:48035527:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0.0466	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	TAF5L--C1orf95	3	0	TAF5L	3597	chr1:229745853:-	C1orf95	19894	chr1:226789707:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	TAF5L->TATA-box_binding_protein_associated_factor_5_like,chr1:229728858-229761794:-,C1orf95->chr1:226736501-226796915:+,chromosome_1_open_reading_frame_95	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	TUBB4B--FTH1	3	0	TUBB4B	1128	chr9:140135792:+	FTH1	6697	chr11:61734931:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0349	TRUE	0	0	0	6	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	VIM--FTH1	3	0	VIM	2128	chr10:17271385:+	FTH1	12415	chr11:61734922:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0349	TRUE	0	0	0	6	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	VIM--FTH1	3	0	VIM	2124	chr10:17271381:+	FTH1	12402	chr11:61734935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0349	TRUE	0	0	0	6	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	2	1	PPP1R13L	2141	chr19:45908257:-	ZNF541	31054	chr19:48024911:-	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0233	0.0116	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0349	TRUE	0	1	0	1	1	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	ABI1--CSGALNACT2	2	0	ABI1	3560	chr10:27112067:-	CSGALNACT2	21030	chr10:43650345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,CSGALNACT2->chondroitin_sulfate_N-acetylgalactosaminyltransferase_2,chr10:43633934-43680756:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	CNTFR--SPG20OS	2	0	CNTFR	1569	chr9:34589553:-	SPG20OS	15210	chr13:36939637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CNTFR->chr9:34551430-34590121:-,ciliary_neurotrophic_factor_receptor,SPG20OS->chr13:36920568-36943738:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	ITGB1--CHM	2	0	ITGB1	7027	chr10:33247073:-	CHM	46791	chrX:85166343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1,CHM->CHM,_Rab_escort_protein_1,chrX:85116185-85302566:-	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	MICALL1--RP11-82L18.2	2	0	MICALL1	3871	chr22:38308007:+	RP11-82L18.2	23192	chr9:91724043:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	MICALL1->MICAL_like_1,chr22:38301664-38338829:+,RP11-82L18.2->chr9:91703519-91724849:-	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	SSH2--GOSR1	2	0	SSH2	1339	chr17:28256956:-	GOSR1	47325	chr17:28837898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	BBC3--FCGRT	1	3	BBC3	5401	chr19:47729821:-	FCGRT	20825	chr19:50029267:+	ONLY_REF_SPLICE	YES	4	25	0.5	0.14	0.0116	0.0349	BBC3->BCL2_binding_component_3,Oncogene{Bushman},chr19:47724081-47736023:-,FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.14	0.5	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	KANSL1--LRRC37A2	1	1	KANSL1	8599	chr17:44230270:-	LRRC37A2	36623	chr17:44594728:+	ONLY_REF_SPLICE	NO	36	5	0.05	0.29	0.0116	0.0116	GTEx_FI:{Brain=[count:2=pct:0.3]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	U87MG_CENTRAL_NERVOUS_SYSTEM	0.05	0.29	0.0232	TRUE	0	1	0	3	1	TRUE	ACH-000075
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	245	165	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	97	28	0.81	0.94	3.5829	2.413	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.94	5.9959	TRUE	0	2	1	16	2	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	62	19	ABL1	1510	chr9:133589842:+	BCR	40306	chr22:23632526:+	ONLY_REF_SPLICE	YES	13	99	0.86	0.45	0.9067	0.2779	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.86	1.1846	TRUE	0	0	0	6	0	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	2	160	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	97	27	0.63	0.86	0.0292	2.3399	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.86	2.3691	TRUE	0	2	1	16	2	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDEL1--PFAS	26	8	NDEL1	4299	chr17:8339363:+	PFAS	32839	chr17:8161125:+	ONLY_REF_SPLICE	YES	18	34	0.65	0.5	0.3802	0.117	NDEL1->chr17:8316449-8393729:+,nudE_neurodevelopment_protein_1_like_1,PFAS->chr17:8150936-8173809:+,phosphoribosylformylglycinamidine_synthase	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.65	0.4972	TRUE	0	0	0	1	0	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	16	CCDC26	6922	chr8:130365050:-	LINC00977	12110	chr8:130235615:-	INCL_NON_REF_SPLICE	YES	34	0	0.36	1	0.0439	0.234	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.2779	TRUE	0	0	0	4	0	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	11	CCDC26	4649	chr8:130411777:-	LINC00977	12110	chr8:130235615:-	INCL_NON_REF_SPLICE	YES	47	0	0.24	1	0.0585	0.1609	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.2194	TRUE	0	0	0	4	0	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	6	CCDC26	6922	chr8:130365050:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	34	7	0.23	0.59	0.0585	0.0877	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.59	0.1462	TRUE	0	0	0	6	0	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	2	13	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	13	102	0.54	0.13	0.0292	0.1901	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.54	0.2193	TRUE	0	2	0	9	2	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	5	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	51	0	0.11	1	0.0146	0.0731	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0877	TRUE	0	3	0	7	3	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MFI2--DLG1	2	0	MFI2	19362	chr3:196730772:-	DLG1	57048	chr3:196796131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[12744],MFI2->chr3:196715492-196756687:-,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAP--CPT1A	2	0	SCAP	5265	chr3:47476498:-	CPT1A	45326	chr11:68529155:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	SCAP->SREBF_chaperone,chr3:47455203-47518616:-,CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000983
HCC2218_BREAST	POLDIP2--BRIP1	66	19	POLDIP2	2314	chr17:26682821:-	BRIP1	34801	chr17:59793424:-	ONLY_REF_SPLICE	YES	538	280	0.14	0.23	0.6723	0.1935	POLDIP2->chr17:26673659-26684545:-,polymerase_(DNA)_delta_interacting_protein_2,BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-	HCC2218_BREAST	0.14	0.23	0.8658	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	USP32--NLK	55	20	USP32	4918	chr17:58422842:-	NLK	57310	chr17:26499543:+	ONLY_REF_SPLICE	YES	385	52	0.16	0.59	0.5602	0.2037	{Klijn_CCL:Breast=1},USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,NLK->chr17:26368763-26523407:+,nemo_like_kinase	HCC2218_BREAST	0.16	0.59	0.7639	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	INTS2--ZNF652	28	26	INTS2	15973	chr17:59967147:-	ZNF652	33579	chr17:47395345:-	ONLY_REF_SPLICE	YES	349	9	0.13	0.86	0.2852	0.2648	INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2,ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652	HCC2218_BREAST	0.13	0.86	0.55	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	NDRG3--RP11-99J16__A.2	24	0	NDRG3	1034	chr20:35374448:-	RP11-99J16__A.2	22595	chr1:230931102:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2445	0	NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-,RP11-99J16__A.2->chr1:230846444-230931238:-	HCC2218_BREAST	1	1	0.2445	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	SSH2--RPL12P38	20	14	SSH2	22667	chr17:27974745:-	RPL12P38	36974	chr17:58511913:-	INCL_NON_REF_SPLICE	YES	20	1	0.63	0.97	0.2037	0.1426	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,RPL12P38->chr17:58511039-58513357:-,ribosomal_protein_L12_pseudogene_38	HCC2218_BREAST	0.63	0.97	0.3463	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	GPRC5C--COMT	20	0	GPRC5C	6435	chr17:72436564:+	COMT	23124	chr22:19950111:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2037	0	GPRC5C->G_protein-coupled_receptor_class_C_group_5_member_C,chr17:72420990-72447792:+,COMT->catechol-O-methyltransferase,chr22:19929130-19957498:+	HCC2218_BREAST	1	1	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	SSH2--USP32	16	14	SSH2	22250	chr17:27975162:-	USP32	35595	chr17:58499766:-	INCL_NON_REF_SPLICE	YES	33	0	0.48	1	0.163	0.1426	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32	HCC2218_BREAST	0.48	1	0.3056	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	RAPGEF4--PDK1	15	3	RAPGEF4	1775	chr2:173600776:+	PDK1	53634	chr2:173451006:+	ONLY_REF_SPLICE	YES	0	30	1	0.38	0.1528	0.0306	RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+,PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1	HCC2218_BREAST	0.38	1	0.1834	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	INTS2--ZNF652	6	27	INTS2	15973	chr17:59967147:-	ZNF652	32455	chr17:47399870:-	ONLY_REF_SPLICE	YES	349	2	0.09	0.94	0.0611	0.275	INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2,ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652	HCC2218_BREAST	0.09	0.94	0.3361	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	CUEDC1--VMP1	11	0	CUEDC1	1099	chr17:56032586:-	VMP1	24520	chr17:57812699:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.112	0	CUEDC1->CUE_domain_containing_1,Oncogene{Bushman},chr17:55938604-56032684:-,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HCC2218_BREAST	1	1	0.112	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	RCC1--ICA1	10	0	RCC1	2175	chr1:28834672:+	ICA1	32692	chr7:8183602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1019	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ICA1->chr7:8152814-8302317:-,islet_cell_autoantigen_1	HCC2218_BREAST	1	1	0.1019	TRUE	0	6	0	3	2	TRUE	ACH-000755
HCC2218_BREAST	DENND4B--SLC39A1	7	6	DENND4B	11088	chr1:153909018:-	SLC39A1	22346	chr1:153936179:-	ONLY_REF_SPLICE	YES	140	24	0.08	0.35	0.0713	0.0611	LOCAL_REARRANGEMENT:-:[12403],DENND4B->DENN_domain_containing_4B,chr1:153901977-153919172:-,SLC39A1->chr1:153931575-153940188:-,solute_carrier_family_39_member_1	HCC2218_BREAST	0.08	0.35	0.1324	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	SSH2--RPL12P38	6	1	SSH2	22250	chr17:27975162:-	RPL12P38	37039	chr17:58511848:-	INCL_NON_REF_SPLICE	YES	33	1	0.17	0.88	0.0611	0.0102	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,RPL12P38->chr17:58511039-58513357:-,ribosomal_protein_L12_pseudogene_38	HCC2218_BREAST	0.17	0.88	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	PABPC1--RPS28	6	0	PABPC1	2022	chr8:101734016:-	RPS28	18700	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC2218_BREAST	1	1	0.0611	TRUE	0	0	0	6	0	TRUE	ACH-000755
HCC2218_BREAST	RCC1--GNAS	6	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0611	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC2218_BREAST	1	1	0.0611	TRUE	0	3	0	13	2	TRUE	ACH-000755
HCC2218_BREAST	CASP8--STRADB	5	0	CASP8	1670	chr2:202098835:+	STRADB	33270	chr2:202340342:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0509	0	CASP8->Oncogene{Bushman},caspase_8,chr2:202098166-202152434:+,STRADB->STE20-related_kinase_adaptor_beta,chr2:202252581-202345569:+	HCC2218_BREAST	1	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	USP32--NLK	2	12	USP32	4918	chr17:58422842:-	NLK	58412	chr17:26512205:+	ONLY_REF_SPLICE	YES	385	62	0.04	0.18	0.0204	0.1222	{Klijn_CCL:Breast=1},USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,NLK->chr17:26368763-26523407:+,nemo_like_kinase	HCC2218_BREAST	0.04	0.18	0.1426	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	BCAS3--PRAC2	3	0	BCAS3	28940	chr17:59093262:+	PRAC2	60689	chr17:46801690:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,PRAC2->chr17:46800530-46802819:+,prostate_cancer_susceptibility_candidate_2	HCC2218_BREAST	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	EEF2--HNRNPA1	3	0	EEF2	3353	chr19:3983115:-	HNRNPA1	15866	chr12:54676584:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	HCC2218_BREAST	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	ARMC7--KCTD2	2	0	ARMC7	1655	chr17:73106701:+	KCTD2	16808	chr17:73049109:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:+:[44063],ARMC7->armadillo_repeat_containing_7,chr17:73106047-73126360:+,KCTD2->Oncogene{Bushman},chr17:73028670-73061984:+,potassium_channel_tetramerization_domain_containing_2	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	CASP8--STRADB	2	0	CASP8	6501	chr2:202122877:+	STRADB	33270	chr2:202340342:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CASP8->Oncogene{Bushman},caspase_8,chr2:202098166-202152434:+,STRADB->STE20-related_kinase_adaptor_beta,chr2:202252581-202345569:+	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	CTNND1--GNAS	2	0	CTNND1	2585	chr11:57529518:+	GNAS	46198	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	30054	chr13:114201615:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	HCC2218_BREAST	1	1	0.0204	TRUE	0	3	0	3	3	TRUE	ACH-000755
HCC2218_BREAST	DOCK5--PPP2R2A	2	0	DOCK5	1229	chr8:25042466:+	PPP2R2A	77660	chr8:26211984:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	INVS--ZNF782	2	0	INVS	17677	chr9:103015418:+	ZNF782	37882	chr9:99589463:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	INVS->chr9:102861538-103063282:+,inversin,ZNF782->chr9:99578754-99637905:-,zinc_finger_protein_782	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	MAGI1--CDC42BPA	2	0	MAGI1	1839	chr3:66023671:-	CDC42BPA	53133	chr1:227400920:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1,CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	MAPK9--CANX	2	0	MAPK9	2345	chr5:179713975:-	CANX	32663	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},MAPK9->Oncogene{Bushman},chr5:179660143-179719099:-,mitogen-activated_protein_kinase_9,CANX->calnexin,chr5:179105629-179157926:+	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	MPV17--POMT1	2	0	MPV17	3903	chr2:27545315:-	POMT1	16502	chr9:134381501:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MPV17->MPV17,_mitochondrial_inner_membrane_protein,chr2:27532360-27548547:-,POMT1->chr9:134378289-134399193:+,protein_O-mannosyltransferase_1	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	NFIB--ZDHHC21	2	0	NFIB	6984	chr9:14306988:-	ZDHHC21	39981	chr9:14640010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B,ZDHHC21->chr9:14611069-14693469:-,zinc_finger_DHHC-type_containing_21	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	RP11-435O5.2--ERCC6L2	2	0	RP11-435O5.2	1073	chr9:98189006:-	ERCC6L2	30227	chr9:98740343:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RP11-435O5.2->chr9:98177116-98189078:-,ERCC6L2->chr9:98637983-98776842:+,excision_repair_cross-complementation_group_6_like_2	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	RPL30--LAPTM4B	2	0	RPL30	2123	chr8:99057575:-	LAPTM4B	12692	chr8:98817581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	HCC2218_BREAST	1	1	0.0204	TRUE	1	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	SS18L1--AKT2	2	0	SS18L1	1124	chr20:60718945:+	AKT2	29554	chr19:40771258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	SDK2--CTB-91J4.1	1	2	SDK2	1065	chr17:71640164:-	CTB-91J4.1	55299	chr17:34474961:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0102	0.0204	SDK2->chr17:71330523-71640228:-,sidekick_cell_adhesion_molecule_2,CTB-91J4.1->chr17:34443570-34504870:+	HCC2218_BREAST	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000755
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-574K11.29	125	8	TIMM23	6952	chr10:51606988:-	RP11-574K11.29	13578	chr10:75473090:-	INCL_NON_REF_SPLICE	YES	272	7	0.33	0.95	0.6864	0.0439	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.29->chr10:75463493-75473339:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.95	0.7303	TRUE	1	1	0	6	1	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBL1--PPP4R1L	66	28	RBL1	12024	chr20:35675456:-	PPP4R1L	30379	chr20:56861502:-	ONLY_REF_SPLICE	YES	149	0	0.39	1	0.3624	0.1537	RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1,PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene)	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.5161	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-290D2.6--RPL35	23	0	RP11-290D2.6	2129	chr13:45915302:+	RPL35	5181	chr9:127624225:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1263	0	RP11-290D2.6->chr13:45914174-45915318:+,RPL35->chr9:127620159-127624260:-,ribosomal_protein_L35	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1263	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDM1--HBS1L	16	6	PRDM1	3130	chr6:106536324:+	HBS1L	18282	chr6:135371785:-	ONLY_REF_SPLICE	YES	0	141	1	0.13	0.0879	0.0329	PRDM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},PR_domain_1,chr6:106534195-106557814:+,HBS1L->HBS1_like_translational_GTPase,chr6:135281516-135424194:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATF5--RPS28	8	0	ATF5	1634	chr19:50432592:+	RPS28	9385	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	ATF5->Oncogene{Bushman},activating_transcription_factor_5,chr19:50431959-50437192:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0439	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIM1--DDT	7	0	PIM1	1266	chr6:37138244:+	DDT	12911	chr22:24316023:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0384	0	PIM1->Oncogene{Bushman},Pim-1_proto-oncogene,_serine/threonine_kinase,chr6:37137979-37143202:+,DDT->D-dopachrome_tautomerase,chr22:24313554-24322660:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBL1--PPP4R1L	1	15	RBL1	12024	chr20:35675456:-	PPP4R1L	31512	chr20:56847931:-	ONLY_REF_SPLICE	YES	149	39	0.1	0.29	0.0055	0.0824	RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1,PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene)	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.29	0.0879	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALCOCO2--UBR2	2	0	CALCOCO2	4350	chr17:46919249:+	UBR2	63969	chr6:42643794:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	CALCOCO2->calcium_binding_and_coiled-coil_domain_2,chr17:46908350-46943884:+,UBR2->chr6:42531800-42661242:+,ubiquitin_protein_ligase_E3_component_n-recognin_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GCN1L1--TESC	2	0	GCN1L1	3198	chr12:120622627:-	TESC	55611	chr12:117484643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	GCN1L1->chr12:120565007-120632513:-,TESC->chr12:117476728-117537284:-,tescalcin	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IRF4--TTC17	2	0	IRF4	1071	chr6:391809:+	TTC17	47431	chr11:43511789:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	IRF4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:391739-411447:+,interferon_regulatory_factor_4,TTC17->chr11:43380482-43516483:+,tetratricopeptide_repeat_domain_17	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NSL1--LPGAT1	2	0	NSL1	4740	chr1:212955714:-	LPGAT1	17789	chr1:211966532:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	NSL1->NSL1,_MIS12_kinetochore_complex_component,chr1:212899495-212965124:-,LPGAT1->chr1:211916799-212004114:-,lysophosphatidylglycerol_acyltransferase_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	P2RY8--LUC7L2	2	0	P2RY8	1187	chrX:1655814:-	LUC7L2	13839	chr7:139083345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	P2RY8->Oncogene{Bushman},chrX:1581465-1656000:-,chrY:1531465-1606000:-,purinergic_receptor_P2Y8,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PI4KA--RAC2	2	0	PI4KA	1848	chr22:21212858:-	RAC2	60087	chr22:37622843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha,RAC2->Oncogene{Bushman},chr22:37621301-37640488:-,ras-related_C3_botulinum_toxin_substrate_2_(rho_family,_small_GTP_binding_protein_Rac2)	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIAS2--SMAD2	2	0	PIAS2	2822	chr18:44497285:-	SMAD2	37363	chr18:45423180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},PIAS2->chr18:44388353-44500123:-,protein_inhibitor_of_activated_STAT_2,SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--NARF	2	0	RCC1	2920	chr1:28835417:+	NARF	32361	chr17:80443373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-38J22.6--NUP107	2	0	RP11-38J22.6	4771	chr1:206289367:-	NUP107	21616	chr12:69109407:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	RP11-38J22.6->chr1:206288156-206306131:-,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SELT--SETBP1	2	0	SELT	1625	chr3:150321286:+	SETBP1	16459	chr18:42281140:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	SELT->chr3:150320662-150348222:+,SETBP1->Oncogene{Bushman},SET_binding_protein_1,chr18:42260138-42648475:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USF2--ANKHD1	2	0	USF2	3164	chr19:35762044:+	ANKHD1	46776	chr5:139916974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	USF2->chr19:35759881-35770724:+,upstream_transcription_factor_2,_c-fos_interacting,ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF320--TXNL1	2	0	ZNF320	1174	chr19:53400773:-	TXNL1	25941	chr18:54293688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	ZNF320->chr19:53367043-53400946:-,zinc_finger_protein_320,TXNL1->chr18:54264439-54318831:-,thioredoxin_like_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OUMS23_LARGE_INTESTINE	NCOA3--EYA2	476	103	NCOA3	1163	chr20:46130763:+	EYA2	46927	chr20:45808446:+	ONLY_REF_SPLICE	YES	27	24	0.96	0.96	4.4257	0.9577	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	OUMS23_LARGE_INTESTINE	0.96	0.96	5.3834	TRUE	0	0	0	2	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	ELF1--C4orf45	162	34	ELF1	3990	chr13:41556119:-	C4orf45	22910	chr4:159836511:-	ONLY_REF_SPLICE	YES	100	0	0.66	1	1.5062	0.3161	{Klijn_CCL:Colo-Rectal=1},ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,C4orf45->chr4:159814286-159959912:-,chromosome_4_open_reading_frame_45	OUMS23_LARGE_INTESTINE	0.66	1	1.8223	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	FABP3--RP11-439L8.2	109	62	FABP3	2630	chr1:31845789:-	RP11-439L8.2	9863	chr1:31961483:-	INCL_NON_REF_SPLICE	YES	432	0	0.28	1	1.0135	0.5765	FABP3->Oncogene{Bushman},chr1:31838472-31849697:-,fatty_acid_binding_protein_3,RP11-439L8.2->chr1:31960436-31961777:-	OUMS23_LARGE_INTESTINE	0.28	1	1.59	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	KIAA1217--RNF17	96	38	KIAA1217	12390	chr10:24727408:+	RNF17	57519	chr13:25399757:+	ONLY_REF_SPLICE	YES	21	0	0.86	1	0.8926	0.3533	{Klijn_CCL:Colo-Rectal=1},KIAA1217->KIAA1217,chr10:23983675-24836772:+,RNF17->chr13:25338290-25454059:+,ring_finger_protein_17	OUMS23_LARGE_INTESTINE	0.86	1	1.2459	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	TMEM259--SBNO2	74	34	TMEM259	6870	chr19:1011095:-	SBNO2	24400	chr19:1119163:-	ONLY_REF_SPLICE	YES	156	40	0.41	0.73	0.688	0.3161	LOCAL_REARRANGEMENT:-:[86519],TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	OUMS23_LARGE_INTESTINE	0.41	0.73	1.0041	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	TMEM259--SBNO2	50	20	TMEM259	6599	chr19:1011366:-	SBNO2	24400	chr19:1119163:-	ONLY_REF_SPLICE	YES	153	40	0.31	0.64	0.4649	0.186	LOCAL_REARRANGEMENT:-:[86519],TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	OUMS23_LARGE_INTESTINE	0.31	0.64	0.6509	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	PARP4--CNTNAP2	48	14	PARP4	2238	chr13:25077783:-	CNTNAP2	63577	chr7:147926738:+	ONLY_REF_SPLICE	YES	26	0	0.7	1	0.4463	0.1302	PARP4->chr13:24995064-25086948:-,poly(ADP-ribose)_polymerase_family_member_4,CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2	OUMS23_LARGE_INTESTINE	0.7	1	0.5765	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	PARP4--CNTNAP2	40	0	PARP4	1105	chr13:25086844:-	CNTNAP2	63577	chr7:147926738:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3719	0	PARP4->chr13:24995064-25086948:-,poly(ADP-ribose)_polymerase_family_member_4,CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2	OUMS23_LARGE_INTESTINE	1	1	0.3719	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	AAK1--AC092431.3	37	9	AAK1	3410	chr2:69870010:-	AC092431.3	40957	chr2:69927507:-	ONLY_REF_SPLICE	YES	13	0	0.78	1	0.344	0.0837	LOCAL_REARRANGEMENT:-:[25843],AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,AC092431.3->chr2:69927324-69940979:-	OUMS23_LARGE_INTESTINE	0.78	1	0.4277	TRUE	0	3	0	1	3	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	NCOA3--EYA2	19	38	NCOA3	1163	chr20:46130763:+	EYA2	47944	chr20:45809463:+	ONLY_REF_SPLICE	YES	27	74	0.68	0.44	0.1767	0.3533	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	OUMS23_LARGE_INTESTINE	0.44	0.68	0.53	TRUE	0	0	0	2	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	CWC25--FBXO47	23	2	CWC25	7334	chr17:36965955:-	FBXO47	19869	chr17:37111186:-	ONLY_REF_SPLICE	YES	18	0	0.58	1	0.2138	0.0186	{Klijn_CCL:Colo-Rectal=1},CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-,FBXO47->F-box_protein_47,chr17:37092685-37123655:-	OUMS23_LARGE_INTESTINE	0.58	1	0.2324	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	SPIDR--XKR4	18	12	SPIDR	7740	chr8:48206619:+	XKR4	42978	chr8:56435840:+	ONLY_REF_SPLICE	YES	30	0	0.5	1	0.1674	0.1116	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,XKR4->XK_related_4,chr8:56014949-56454613:+	OUMS23_LARGE_INTESTINE	0.5	1	0.279	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	NCOA3--EYA2	18	11	NCOA3	1163	chr20:46130763:+	EYA2	49066	chr20:45811939:+	ONLY_REF_SPLICE	YES	27	143	0.52	0.17	0.1674	0.1023	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	OUMS23_LARGE_INTESTINE	0.17	0.52	0.2697	TRUE	0	0	0	2	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	TMEM259--SBNO2	8	40	TMEM259	7165	chr19:1010800:-	SBNO2	24355	chr19:1119208:-	INCL_NON_REF_SPLICE	YES	171	43	0.22	0.53	0.0744	0.3719	LOCAL_REARRANGEMENT:-:[86519],TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	OUMS23_LARGE_INTESTINE	0.22	0.53	0.4463	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	FABP3--RP11-439L8.2	6	47	FABP3	2630	chr1:31845789:-	RP11-439L8.2	9874	chr1:31961472:-	INCL_NON_REF_SPLICE	YES	432	0	0.11	1	0.0558	0.437	FABP3->Oncogene{Bushman},chr1:31838472-31849697:-,fatty_acid_binding_protein_3,RP11-439L8.2->chr1:31960436-31961777:-	OUMS23_LARGE_INTESTINE	0.11	1	0.4928	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	ASAP2--TONSL	15	1	ASAP2	1466	chr2:9347359:+	TONSL	43717	chr8:145660272:-	ONLY_REF_SPLICE	YES	27	26	0.37	0.38	0.1395	0.0093	HGNC_GENEFAM,ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein	OUMS23_LARGE_INTESTINE	0.37	0.38	0.1488	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	FLNB--SLMAP	12	4	FLNB	28611	chr3:58118658:+	SLMAP	84514	chr3:57902633:+	ONLY_REF_SPLICE	YES	75	31	0.18	0.34	0.1116	0.0372	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	OUMS23_LARGE_INTESTINE	0.18	0.34	0.1488	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	KIAA1217--RNF17	2	38	KIAA1217	12390	chr10:24727408:+	RNF17	56337	chr13:25398334:+	ONLY_REF_SPLICE	YES	21	0	0.66	1	0.0186	0.3533	{Klijn_CCL:Colo-Rectal=1},KIAA1217->KIAA1217,chr10:23983675-24836772:+,RNF17->chr13:25338290-25454059:+,ring_finger_protein_17	OUMS23_LARGE_INTESTINE	0.66	1	0.3719	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	TMEM259--SBNO2	3	34	TMEM259	6975	chr19:1010990:-	SBNO2	24400	chr19:1119163:-	ONLY_REF_SPLICE	YES	161	40	0.19	0.48	0.0279	0.3161	LOCAL_REARRANGEMENT:-:[86519],TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	OUMS23_LARGE_INTESTINE	0.19	0.48	0.344	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	ELF1--C4orf45	8	5	ELF1	3990	chr13:41556119:-	C4orf45	24100	chr4:159814869:-	ONLY_REF_SPLICE	YES	100	8	0.12	0.62	0.0744	0.0465	{Klijn_CCL:Colo-Rectal=1},ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,C4orf45->chr4:159814286-159959912:-,chromosome_4_open_reading_frame_45	OUMS23_LARGE_INTESTINE	0.12	0.62	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	PPFIA1--ANO1	7	0	PPFIA1	2737	chr11:70118542:+	ANO1	62047	chr11:69999163:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0651	0	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	OUMS23_LARGE_INTESTINE	1	1	0.0651	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	CD27-AS1--NOP2	5	4	CD27-AS1	5052	chr12:6556127:-	NOP2	14854	chr12:6673112:-	ONLY_REF_SPLICE	YES	0	67	1	0.12	0.0465	0.0372	CD27-AS1->CD27_antisense_RNA_1,chr12:6548167-6560733:-,NOP2->NOP2_nucleolar_protein,chr12:6666029-6677857:-	OUMS23_LARGE_INTESTINE	0.12	1	0.0837	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	DOT1L--SCAMP4	5	0	DOT1L	2161	chr19:2180755:+	SCAMP4	45023	chr19:1918126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0465	0	DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,SCAMP4->Oncogene{Bushman},chr19:1905213-1926016:+,secretory_carrier_membrane_protein_4	OUMS23_LARGE_INTESTINE	1	1	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	EML2--FBXO46	3	4	EML2	14248	chr19:46129963:-	FBXO46	34563	chr19:46216831:-	ONLY_REF_SPLICE	YES	33	4	0.17	0.64	0.0279	0.0372	LOCAL_REARRANGEMENT:-:[65000],EML2->chr19:46110252-46148887:-,echinoderm_microtubule_associated_protein_like_2,FBXO46->F-box_protein_46,chr19:46213887-46234162:-	OUMS23_LARGE_INTESTINE	0.17	0.64	0.0651	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	SMN2--SERF1B	4	0	SMN2	1244	chr5:69345593:+	SERF1B	17486	chr5:69328142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:+:[6410],SMN2->chr5:69345350-69374349:+,survival_of_motor_neuron_2,_centromeric,SERF1B->chr5:69321074-69338940:+,small_EDRK-rich_factor_1B_(centromeric)	OUMS23_LARGE_INTESTINE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-296O14.3--TNFSF4	3	2	RP11-296O14.3	5625	chr1:173387589:-	TNFSF4	9411	chr1:173176324:-	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0279	0.0186	RP11-296O14.3->chr1:173386932-173430501:-,TNFSF4->chr1:173152873-173176452:-,tumor_necrosis_factor_superfamily_member_4	OUMS23_LARGE_INTESTINE	0.45	1	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	BLMH--NF1	3	1	BLMH	6463	chr17:28612406:-	NF1	59781	chr17:29652838:+	ONLY_REF_SPLICE	YES	89	16	0.04	0.2	0.0279	0.0093	BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	OUMS23_LARGE_INTESTINE	0.04	0.2	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	IMMP2L--AC003088.1	3	1	IMMP2L	4976	chr7:111127294:-	AC003088.1	19914	chr7:110165618:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0279	0.0093	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	OUMS23_LARGE_INTESTINE	0.5	1	0.0372	TRUE	0	2	0	2	2	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	BSG--GNAS	3	0	BSG	2405	chr19:572701:+	GNAS	29302	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	OUMS23_LARGE_INTESTINE	1	1	0.0279	TRUE	0	1	1	2	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	CWC25--FBXO47	2	1	CWC25	7334	chr17:36965955:-	FBXO47	20947	chr17:37107942:-	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0186	0.0093	{Klijn_CCL:Colo-Rectal=1},CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-,FBXO47->F-box_protein_47,chr17:37092685-37123655:-	OUMS23_LARGE_INTESTINE	0.14	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	ASAP2--TONSL	2	0	ASAP2	1466	chr2:9347359:+	TONSL	46146	chr8:145657843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	HGNC_GENEFAM,ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein	OUMS23_LARGE_INTESTINE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	FBXL5--RP11-484O2.1	2	0	FBXL5	16339	chr4:15613889:-	RP11-484O2.1	22958	chr4:15364147:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	FBXL5->F-box_and_leucine-rich_repeat_protein_5,chr4:15606162-15683302:-,RP11-484O2.1->chr4:15359765-15421656:-	OUMS23_LARGE_INTESTINE	1	1	0.0186	TRUE	1	6	0	5	2	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	PPFIA1--ANO1	2	0	PPFIA1	2737	chr11:70118542:+	ANO1	61440	chr11:69998556:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	OUMS23_LARGE_INTESTINE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	SNHG16--RCOR3	2	0	SNHG16	1092	chr17:74553939:+	RCOR3	29733	chr1:211486062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,RCOR3->REST_corepressor_3,chr1:211431719-211489727:+	OUMS23_LARGE_INTESTINE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	UCK2--RP4-723E3.1	2	0	UCK2	3521	chr1:165860559:+	RP4-723E3.1	24730	chr20:51147427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,RP4-723E3.1->chr20:50827184-51266970:+	OUMS23_LARGE_INTESTINE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	KIAA1217--RNF17	1	3	KIAA1217	10097	chr10:24669996:+	RNF17	57519	chr13:25399757:+	ONLY_REF_SPLICE	YES	43	0	0.09	1	0.0093	0.0279	{Klijn_CCL:Colo-Rectal=1},KIAA1217->KIAA1217,chr10:23983675-24836772:+,RNF17->chr13:25338290-25454059:+,ring_finger_protein_17	OUMS23_LARGE_INTESTINE	0.09	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	SPIDR--XKR4	1	2	SPIDR	6576	chr8:48203726:+	XKR4	42978	chr8:56435840:+	ONLY_REF_SPLICE	NO	42	0	0.07	1	0.0093	0.0186	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,XKR4->XK_related_4,chr8:56014949-56454613:+	OUMS23_LARGE_INTESTINE	0.07	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	CHSY1--PCSK6	1	1	CHSY1	1796	chr15:101791342:-	PCSK6	35863	chr15:101866684:-	ONLY_REF_SPLICE	YES	1	12	0.67	0.14	0.0093	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},LOCAL_REARRANGEMENT:-:[48681],CHSY1->chondroitin_sulfate_synthase_1,chr15:101715928-101792137:-,PCSK6->chr15:101840818-102065405:-,proprotein_convertase_subtilisin/kexin_type_6	OUMS23_LARGE_INTESTINE	0.14	0.67	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	IMMP2L--AC003088.1	1	1	IMMP2L	12890	chr7:110526649:-	AC003088.1	19914	chr7:110165618:-	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0093	0.0093	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	OUMS23_LARGE_INTESTINE	0.25	1	0.0186	TRUE	1	1	0	2	1	TRUE	ACH-000296
MDAMB157_BREAST	FAM65A--NUTF2	449	13	FAM65A	2823	chr16:67562817:+	NUTF2	20250	chr16:67899005:+	ONLY_REF_SPLICE	YES	0	40	1	0.92	5.4457	0.1577	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2	MDAMB157_BREAST	0.92	1	5.6034	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	CTNNA1--MATR3	365	98	CTNNA1	17161	chr5:138163407:+	MATR3	58734	chr5:138650364:+	ONLY_REF_SPLICE	YES	1	287	1	0.62	4.4269	1.1886	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	MDAMB157_BREAST	0.62	1	5.6155	TRUE	0	0	0	6	0	TRUE	ACH-000621
MDAMB157_BREAST	CREBBP--USP7	183	53	CREBBP	4785	chr16:3860604:-	USP7	50806	chr16:9024254:-	ONLY_REF_SPLICE	YES	61	4	0.79	0.98	2.2195	0.6428	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,USP7->Oncogene{Bushman},chr16:8985951-9058371:-,ubiquitin_specific_peptidase_7_(herpes_virus-associated)	MDAMB157_BREAST	0.79	0.98	2.8623	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	FAM65A--NUTF2	120	65	FAM65A	7176	chr16:67572453:+	NUTF2	20250	chr16:67899005:+	ONLY_REF_SPLICE	YES	10	40	0.95	0.82	1.4554	0.7884	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2	MDAMB157_BREAST	0.82	0.95	2.2438	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	TC2N--FBLN5	87	31	TC2N	7430	chr14:92268598:-	FBLN5	30117	chr14:92361416:-	ONLY_REF_SPLICE	YES	28	48	0.81	0.71	1.0552	0.376	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[1876],TC2N->chr14:92246095-92333880:-,tandem_C2_domains,_nuclear,FBLN5->chr14:92335756-92414331:-,fibulin_5	MDAMB157_BREAST	0.71	0.81	1.4312	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	HIATL2--ZNF367	90	15	HIATL2	1322	chr9:99775541:-	ZNF367	15665	chr9:99160596:-	ONLY_REF_SPLICE	YES	14	1	0.88	0.99	1.0916	0.1819	HIATL2->chr9:99660348-99775862:-,ZNF367->chr9:99148223-99180611:-,zinc_finger_protein_367	MDAMB157_BREAST	0.88	0.99	1.2735	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	RAB1A--PELI1	72	16	RAB1A	1214	chr2:65357027:-	PELI1	15921	chr2:64335513:-	ONLY_REF_SPLICE	YES	790	35	0.1	0.72	0.8733	0.1941	RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-,PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1	MDAMB157_BREAST	0.1	0.72	1.0674	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	CTNNA1--MATR3	44	110	CTNNA1	17161	chr5:138163407:+	MATR3	52013	chr5:138642928:+	ONLY_REF_SPLICE	YES	1	68	0.99	0.69	0.5337	1.3341	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	MDAMB157_BREAST	0.69	0.99	1.8678	TRUE	0	1	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	COL6A2--DIP2A	59	0	COL6A2	1077	chr21:47518087:+	DIP2A	39874	chr21:47959790:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.7156	0	COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A	MDAMB157_BREAST	1	1	0.7156	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	KBTBD2--DPY19L1P1	51	20	KBTBD2	5562	chr7:32919047:-	DPY19L1P1	21734	chr7:32718742:-	ONLY_REF_SPLICE	YES	31	0	0.7	1	0.6186	0.2426	KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2,DPY19L1P1->DPY19L1_pseudogene_1,chr7:32620561-32801399:-	MDAMB157_BREAST	0.7	1	0.8612	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	FAM105B--RP11-583F2.1	32	9	FAM105B	3905	chr5:14678884:+	RP11-583F2.1	21259	chr17:62926836:+	ONLY_REF_SPLICE	YES	25	10	0.62	0.8	0.3881	0.1092	FAM105B->chr5:14664773-14699820:+,RP11-583F2.1->chr17:62923752-62930321:+	MDAMB157_BREAST	0.62	0.8	0.4973	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	TC2N--FBLN5	28	9	TC2N	5966	chr14:92278656:-	FBLN5	30117	chr14:92361416:-	ONLY_REF_SPLICE	YES	40	48	0.48	0.44	0.3396	0.1092	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[1876],TC2N->chr14:92246095-92333880:-,tandem_C2_domains,_nuclear,FBLN5->chr14:92335756-92414331:-,fibulin_5	MDAMB157_BREAST	0.44	0.48	0.4488	TRUE	0	2	0	1	1	TRUE	ACH-000621
MDAMB157_BREAST	SPIRE1--AC079466.1	19	12	SPIRE1	9453	chr18:12535475:-	AC079466.1	32539	chr19:29101167:+	ONLY_REF_SPLICE	YES	73	0	0.3	1	0.2304	0.1455	SPIRE1->chr18:12446511-12658133:-,spire_type_actin_nucleation_factor_1,AC079466.1->chr19:29097595-29106136:+	MDAMB157_BREAST	0.3	1	0.3759	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	CORO2B--NOX5	15	2	CORO2B	10418	chr15:69007650:+	NOX5	19431	chr15:69267068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1819	0.0243	CORO2B->Oncogene{Bushman},chr15:68871308-69020145:+,coronin_2B,NOX5->NADPH_oxidase,_EF-hand_calcium_binding_domain_5,chr15:69222864-69355083:+	MDAMB157_BREAST	1	1	0.2062	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	FAM105B--RP11-583F2.1	9	12	FAM105B	3905	chr5:14678884:+	RP11-583F2.1	20782	chr17:62926359:+	ONLY_REF_SPLICE	YES	25	11	0.46	0.66	0.1092	0.1455	FAM105B->chr5:14664773-14699820:+,RP11-583F2.1->chr17:62923752-62930321:+	MDAMB157_BREAST	0.46	0.66	0.2547	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	FAM105B--RP11-583F2.1	8	14	FAM105B	3905	chr5:14678884:+	RP11-583F2.1	18617	chr17:62923754:+	INCL_NON_REF_SPLICE	YES	25	0	0.47	1	0.097	0.1698	FAM105B->chr5:14664773-14699820:+,RP11-583F2.1->chr17:62923752-62930321:+	MDAMB157_BREAST	0.47	1	0.2668	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	RSU1--AC006115.3	8	5	RSU1	6309	chr10:16794538:-	AC006115.3	22640	chr19:57301296:+	ONLY_REF_SPLICE	YES	249	0	0.05	1	0.097	0.0606	RSU1->Ras_suppressor_protein_1,chr10:16632610-16859527:-,AC006115.3->chr19:57202054-57311014:+	MDAMB157_BREAST	0.05	1	0.1576	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	ACAT1--RAB39A	6	7	ACAT1	7198	chr11:108005969:+	RAB39A	21958	chr11:107832672:+	ONLY_REF_SPLICE	YES	230	0	0.05	1	0.0728	0.0849	ACAT1->acetyl-CoA_acetyltransferase_1,chr11:107992243-108018503:+,RAB39A->RAB39A,_member_RAS_oncogene_family,chr11:107799229-107834208:+	MDAMB157_BREAST	0.05	1	0.1577	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	ZNF527--ZNF507	7	1	ZNF527	8855	chr19:37880792:+	ZNF507	31136	chr19:32877614:+	INCL_NON_REF_SPLICE	YES	33	3	0.2	0.73	0.0849	0.0121	HGNC_GENEFAM,PROTCLUST,ZNF527->chr19:37861963-37883968:+,zinc_finger_protein_527,ZNF507->chr19:32836500-32878573:+,zinc_finger_protein_507	MDAMB157_BREAST	0.2	0.73	0.097	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	COL6A2--DIP2A	7	0	COL6A2	1077	chr21:47518087:+	DIP2A	39071	chr21:47958987:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0849	0	COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A	MDAMB157_BREAST	1	1	0.0849	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	FAM65A--NUTF2	1	23	FAM65A	7176	chr16:67572453:+	NUTF2	21378	chr16:67902243:+	ONLY_REF_SPLICE	NO	10	358	0.71	0.06	0.0121	0.279	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2	MDAMB157_BREAST	0.06	0.71	0.2911	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	ELP3--RP11-597M17.1	6	2	ELP3	18782	chr8:28016150:+	RP11-597M17.1	28835	chr8:27766507:+	ONLY_REF_SPLICE	YES	50	0	0.14	1	0.0728	0.0243	ELP3->chr8:27947190-28048673:+,elongator_acetyltransferase_complex_subunit_3,RP11-597M17.1->chr8:27761998-27767827:+	MDAMB157_BREAST	0.14	1	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	FAM65A--NUTF2	2	15	FAM65A	3996	chr16:67563990:+	NUTF2	20250	chr16:67899005:+	ONLY_REF_SPLICE	YES	2	40	0.89	0.3	0.0243	0.1819	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2	MDAMB157_BREAST	0.3	0.89	0.2062	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	FAM65A--NUTF2	2	15	FAM65A	3768	chr16:67563762:+	NUTF2	20250	chr16:67899005:+	ONLY_REF_SPLICE	NO	6	40	0.74	0.3	0.0243	0.1819	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2	MDAMB157_BREAST	0.3	0.74	0.2062	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	KBTBD2--DPY19L1P1	4	4	KBTBD2	5296	chr7:32919313:-	DPY19L1P1	21734	chr7:32718742:-	ONLY_REF_SPLICE	YES	45	0	0.15	1	0.0485	0.0485	KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2,DPY19L1P1->DPY19L1_pseudogene_1,chr7:32620561-32801399:-	MDAMB157_BREAST	0.15	1	0.097	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	KBTBD2--DPY19L1P1	5	0	KBTBD2	3495	chr7:32931148:-	DPY19L1P1	21734	chr7:32718742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0606	0	KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2,DPY19L1P1->DPY19L1_pseudogene_1,chr7:32620561-32801399:-	MDAMB157_BREAST	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	CPQ--SDC2	4	0	CPQ	1176	chr8:97657630:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0485	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	MDAMB157_BREAST	1	1	0.0485	TRUE	1	37	5	9	9	TRUE	ACH-000621
MDAMB157_BREAST	FAM105B--RP11-583F2.1	3	2	FAM105B	2391	chr5:14673827:+	RP11-583F2.1	20782	chr17:62926359:+	ONLY_REF_SPLICE	YES	13	11	0.28	0.31	0.0364	0.0243	FAM105B->chr5:14664773-14699820:+,RP11-583F2.1->chr17:62923752-62930321:+	MDAMB157_BREAST	0.28	0.31	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	CREBBP--USP7	2	3	CREBBP	1895	chr16:3929833:-	USP7	50806	chr16:9024254:-	ONLY_REF_SPLICE	YES	16	4	0.24	0.56	0.0243	0.0364	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,USP7->Oncogene{Bushman},chr16:8985951-9058371:-,ubiquitin_specific_peptidase_7_(herpes_virus-associated)	MDAMB157_BREAST	0.24	0.56	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	BAZ2B--MARCH7	2	2	BAZ2B	1451	chr2:160472753:-	MARCH7	64626	chr2:160585520:+	ONLY_REF_SPLICE	YES	2	14	0.67	0.22	0.0243	0.0243	GTEx_v2:{count=4;pct=0.05%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1},LOCAL_INVERSION:-:+:[95797],BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7	MDAMB157_BREAST	0.22	0.67	0.0486	TRUE	1	1	0	4	1	TRUE	ACH-000621
MDAMB157_BREAST	BAZ2B--MARCH7	2	2	BAZ2B	2299	chr2:160471905:-	MARCH7	64626	chr2:160585520:+	ONLY_REF_SPLICE	YES	3	14	0.57	0.22	0.0243	0.0243	GTEx_v2:{count=4;pct=0.05%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1},LOCAL_INVERSION:-:+:[95797],BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7	MDAMB157_BREAST	0.22	0.57	0.0486	TRUE	1	1	0	4	1	TRUE	ACH-000621
MDAMB157_BREAST	FAM105B--RP11-583F2.1	2	2	FAM105B	2391	chr5:14673827:+	RP11-583F2.1	21259	chr17:62926836:+	ONLY_REF_SPLICE	YES	13	10	0.24	0.29	0.0243	0.0243	FAM105B->chr5:14664773-14699820:+,RP11-583F2.1->chr17:62923752-62930321:+	MDAMB157_BREAST	0.24	0.29	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	TC2N--FBLN5	2	1	TC2N	3418	chr14:92302715:-	FBLN5	30117	chr14:92361416:-	ONLY_REF_SPLICE	YES	5	48	0.38	0.06	0.0243	0.0121	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[1876],TC2N->chr14:92246095-92333880:-,tandem_C2_domains,_nuclear,FBLN5->chr14:92335756-92414331:-,fibulin_5	MDAMB157_BREAST	0.06	0.38	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	CASC10--C9orf3	2	0	CASC10	1513	chr10:21785679:-	C9orf3	45398	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	CASC10->cancer_susceptibility_candidate_10,chr10:21781587-21786191:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	MDAMB157_BREAST	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	COL6A2--DIP2A	2	0	COL6A2	1077	chr21:47518087:+	DIP2A	40989	chr21:47961669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A	MDAMB157_BREAST	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	CXXC5--UBE2D2	2	0	CXXC5	2711	chr5:139028594:+	UBE2D2	18534	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_REARRANGEMENT:+:[18866],CXXC5->CXXC_finger_protein_5,chr5:139026884-139063467:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	MDAMB157_BREAST	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	DVL3--SNX27	2	0	DVL3	6289	chr3:183884053:+	SNX27	24739	chr1:151655832:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	DVL3->chr3:183873176-183891398:+,dishevelled_segment_polarity_protein_3,SNX27->chr1:151584541-151671567:+,sorting_nexin_family_member_27	MDAMB157_BREAST	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	METAP1--EIF4E	2	0	METAP1	1248	chr4:99917018:+	EIF4E	28557	chr4:99823133:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	{Klijn_CCL:Sarcomatoid=1,Stomach=1},LOCAL_INVERSION:+:-:[64983],METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	MDAMB157_BREAST	1	1	0.0243	TRUE	0	1	0	7	1	TRUE	ACH-000621
AGS_STOMACH	SLC7A6--TANGO6	379	302	SLC7A6	3192	chr16:68300624:+	TANGO6	31795	chr16:68934337:+	ONLY_REF_SPLICE	YES	147	5	0.82	0.99	3.241	2.5826	SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	AGS_STOMACH	0.82	0.99	5.8236	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	TMEM87B--MERTK	136	80	TMEM87B	9523	chr2:112843681:+	MERTK	30658	chr2:112722768:+	ONLY_REF_SPLICE	YES	268	1	0.45	1	1.163	0.6841	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[25662],TMEM87B->chr2:112812800-112876895:+,transmembrane_protein_87B,MERTK->MER_proto-oncogene,_tyrosine_kinase,Oncogene{Bushman},chr2:112656056-112787138:+	AGS_STOMACH	0.45	1	1.8471	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	CDKAL1--AC016629.3	30	14	CDKAL1	6416	chr6:20739846:+	AC016629.3	23608	chr19:59109183:-	ONLY_REF_SPLICE	YES	59	0	0.43	1	0.2565	0.1197	CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,AC016629.3->chr19:59105263-59110722:-	AGS_STOMACH	0.43	1	0.3762	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	SLC7A6--TANGO6	11	1	SLC7A6	1047	chr16:68298479:+	TANGO6	31795	chr16:68934337:+	ONLY_REF_SPLICE	YES	0	5	1	0.71	0.0941	0.0086	SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	AGS_STOMACH	0.71	1	0.1027	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	SLC7A6--TANGO6	1	32	SLC7A6	3192	chr16:68300624:+	TANGO6	34085	chr16:68941346:+	ONLY_REF_SPLICE	YES	147	259	0.18	0.11	0.0086	0.2736	SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	AGS_STOMACH	0.11	0.18	0.2822	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	TMEM87B--MERTK	1	16	TMEM87B	8023	chr2:112838695:+	MERTK	30658	chr2:112722768:+	ONLY_REF_SPLICE	YES	373	1	0.04	0.94	0.0086	0.1368	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[25662],TMEM87B->chr2:112812800-112876895:+,transmembrane_protein_87B,MERTK->MER_proto-oncogene,_tyrosine_kinase,Oncogene{Bushman},chr2:112656056-112787138:+	AGS_STOMACH	0.04	0.94	0.1454	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	ARID4A--MRPL14	2	0	ARID4A	3587	chr14:58768408:+	MRPL14	33070	chr6:44084366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	ARID4A->AT-rich_interaction_domain_4A,Oncogene{Bushman},chr14:58765103-58840605:+,MRPL14->chr6:44081194-44095194:-,mitochondrial_ribosomal_protein_L14	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	ATP11A--HSPA4	2	0	ATP11A	16226	chr13:113481205:+	HSPA4	61930	chr5:132432853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	C9orf3--ZADH2	2	0	C9orf3	33832	chr9:97843062:+	ZADH2	44580	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	CEP170B--WHSC1	2	0	CEP170B	2366	chr14:105334892:+	WHSC1	27741	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	DTNB--MARC1	2	0	DTNB	7359	chr2:25851040:-	MARC1	49472	chr1:220986634:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	DTNB->chr2:25600067-25896503:-,dystrobrevin_beta,MARC1->chr1:220960101-220987735:+,mitochondrial_amidoxime_reducing_component_1	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	EIF3M--TEAD1	2	0	EIF3M	1132	chr11:32605475:+	TEAD1	32441	chr11:12946459:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	GPX8--AP3B1	2	0	GPX8	1279	chr5:54456224:+	AP3B1	15558	chr5:77512061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},GPX8->chr5:54455946-54462899:+,glutathione_peroxidase_8_(putative),AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	JKAMP--DAG1	2	0	JKAMP	1151	chr14:59951311:+	DAG1	21879	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	JKAMP->JNK1/MAPK8-associated_membrane_protein,chr14:59951161-59972128:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	STAU1--CANX	2	0	STAU1	8754	chr20:47768119:-	CANX	28212	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1,CANX->calnexin,chr5:179105629-179157926:+	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	VPS13A--GNAQ	2	0	VPS13A	1452	chr9:79792720:+	GNAQ	86859	chr9:80537261:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx&tcga_normals:1/3694=0.03%,VPS13A->chr9:79792269-80036457:+,vacuolar_protein_sorting_13_homolog_A,GNAQ->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_q,Oncogene{Bushman},OncomapV4_panel,chr9:80331003-80646374:-	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	ZCCHC10--ATP8A1	2	0	ZCCHC10	5614	chr5:132342451:-	ATP8A1	41838	chr4:42467093:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	ZCCHC10->chr5:132332677-132362296:-,zinc_finger_CCHC-type_containing_10,ATP8A1->ATPase_phospholipid_transporting_8A1,chr4:42410390-42659122:-	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	ZNF638--MOB1A	2	0	ZNF638	2342	chr2:71559005:+	MOB1A	52732	chr2:74399879:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638,MOB1A->MOB_kinase_activator_1A,chr2:74379655-74406025:-	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	SLC7A6--TANGO6	1	2	SLC7A6	1212	chr16:68298644:+	TANGO6	31795	chr16:68934337:+	ONLY_REF_SPLICE	YES	3	5	0.5	0.38	0.0086	0.0171	SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	AGS_STOMACH	0.38	0.5	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000880
NCIH2004RT_SOFT_TISSUE	SOGA2--PWP1	3	0	SOGA2	29185	chr18:8825508:+	PWP1	50543	chr12:108106065:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	SOGA2->chr18:8705659-8832776:+,PWP1->PWP1_homolog,_endonuclein,chr12:108079509-108106944:+	NCIH2004RT_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000533
NCIH2004RT_SOFT_TISSUE	C17orf76-AS1--WDR43	2	0	C17orf76-AS1	1593	chr17:16342728:+	WDR43	19849	chr2:29136935:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	C17orf76-AS1->chr17:16342136-16381992:+,WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	NCIH2004RT_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RBM14--CCS	2	0	RBM14	1476	chr11:66384528:+	CCS	14358	chr11:66366587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[10563],RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	NCIH2004RT_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000533
NCIH2004RT_SOFT_TISSUE	SNX5--DSTN	2	0	SNX5	1606	chr20:17949018:-	DSTN	24446	chr20:17581383:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5,DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor	NCIH2004RT_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	2	0	TRUE	ACH-000533
NCIH2004RT_SOFT_TISSUE	TAF13--PLP2	2	0	TAF13	2016	chr1:109617609:-	PLP2	11633	chrX:49030682:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-,PLP2->chrX:49028273-49031588:+,proteolipid_protein_2_(colonic_epithelium-enriched)	NCIH2004RT_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000533
FTC133_THYROID	R3HDM4--ARID3A	65	3	R3HDM4	1154	chr19:913087:-	ARID3A	12382	chr19:929262:+	ONLY_REF_SPLICE	YES	47	1	0.59	0.99	0.6764	0.0312	LOCAL_INVERSION:-:+:[12541],R3HDM4->R3H_domain_containing_4,chr19:896503-913240:-,ARID3A->AT-rich_interaction_domain_3A,chr19:925781-975939:+	FTC133_THYROID	0.59	0.99	0.7076	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	VPS26A--RP11-346D6.6	33	8	VPS26A	2919	chr10:70892803:+	RP11-346D6.6	19633	chr10:54214509:-	ONLY_REF_SPLICE	YES	115	1	0.26	0.98	0.3434	0.0833	VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+,RP11-346D6.6->chr10:54210634-54230293:-	FTC133_THYROID	0.26	0.98	0.4267	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	C10orf11--RNLS	22	14	C10orf11	11660	chr10:78084243:+	RNLS	33353	chr10:90122482:-	ONLY_REF_SPLICE	YES	8	8	0.82	0.82	0.2289	0.1457	C10orf11->chr10:77360998-78319925:+,chromosome_10_open_reading_frame_11,RNLS->chr10:90033621-90344287:-,renalase,_FAD-dependent_amine_oxidase	FTC133_THYROID	0.82	0.82	0.3746	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	CNTNAP2--TPK1	21	5	CNTNAP2	18196	chr7:147675081:+	TPK1	65311	chr7:144150756:-	ONLY_REF_SPLICE	YES	0	52	1	0.33	0.2185	0.052	CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2,TPK1->Oncogene{Bushman},chr7:144149034-144533488:-,thiamin_pyrophosphokinase_1	FTC133_THYROID	0.33	1	0.2705	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	TPK1--CNTNAP2	12	1	TPK1	24669	chr7:144245584:-	CNTNAP2	46209	chr7:147336198:+	ONLY_REF_SPLICE	YES	56	0	0.19	1	0.1249	0.0104	TPK1->Oncogene{Bushman},chr7:144149034-144533488:-,thiamin_pyrophosphokinase_1,CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2	FTC133_THYROID	0.19	1	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	NINL--RP4-718D20.3	11	2	NINL	3351	chr20:25498389:-	RP4-718D20.3	36157	chr20:19674106:-	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.1145	0.0208	NINL->chr20:25433341-25566153:-,ninein_like,RP4-718D20.3->chr20:19673853-19678220:-	FTC133_THYROID	0.76	1	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	VPS26A--RP11-346D6.6	3	8	VPS26A	2919	chr10:70892803:+	RP11-346D6.6	18045	chr10:54223092:-	ONLY_REF_SPLICE	YES	115	0	0.09	1	0.0312	0.0833	VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+,RP11-346D6.6->chr10:54210634-54230293:-	FTC133_THYROID	0.09	1	0.1145	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	PPDPF--S100A6	4	0	PPDPF	1591	chr20:62152667:+	S100A6	5734	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	PPDPF->chr20:62152077-62153559:+,pancreatic_progenitor_cell_differentiation_and_proliferation_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	FTC133_THYROID	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	TMSB10--RPS2	3	0	TMSB10	1889	chr2:85133637:+	RPS2	7385	chr16:2012524:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	FTC133_THYROID	1	1	0.0312	TRUE	0	0	0	3	0	TRUE	ACH-000903
FTC133_THYROID	TMSB10--RPS2	3	0	TMSB10	1922	chr2:85133670:+	RPS2	7643	chr16:2012266:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	FTC133_THYROID	1	1	0.0312	TRUE	0	0	0	3	0	TRUE	ACH-000903
FTC133_THYROID	CNTNAP2--TPK1	2	1	CNTNAP2	17068	chr7:147600813:+	TPK1	65311	chr7:144150756:-	ONLY_REF_SPLICE	YES	3	52	0.5	0.05	0.0208	0.0104	CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2,TPK1->Oncogene{Bushman},chr7:144149034-144533488:-,thiamin_pyrophosphokinase_1	FTC133_THYROID	0.05	0.5	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	BNC2--C9orf92	2	0	BNC2	12784	chr9:16435553:-	C9orf92	33426	chr9:16215897:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_FI:{Esophagus=[count:2=pct:0.5],Lung=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},BNC2->basonuclin_2,chr9:16409501-16870841:-,C9orf92->chr9:16203933-16276311:-,chromosome_9_open_reading_frame_92	FTC133_THYROID	1	1	0.0208	TRUE	1	21	1	1	21	TRUE	ACH-000903
FTC133_THYROID	CRYM--SSR3	2	0	CRYM	1106	chr16:21314299:-	SSR3	23325	chr3:156262228:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CRYM->chr16:21250195-21314404:-,crystallin_mu,SSR3->chr3:156257929-156272973:-,signal_sequence_receptor,_gamma_(translocon-associated_protein_gamma)	FTC133_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	DCBLD1--NUP214	2	0	DCBLD1	8724	chr6:117825142:+	NUP214	41150	chr9:134019667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	DCBLD1->chr6:117774980-117891021:+,discoidin,_CUB_and_LCCL_domain_containing_1,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	FTC133_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	FKBP2--ARHGAP10	2	0	FKBP2	2556	chr11:64010030:+	ARHGAP10	32198	chr4:148944414:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	FKBP2->FK506_binding_protein_2,chr11:64008475-64011604:+,ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+	FTC133_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	L2HGDH--C14orf142	2	0	L2HGDH	1538	chr14:50778729:-	C14orf142	21318	chr14:93670127:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	L2HGDH->L-2-hydroxyglutarate_dehydrogenase,chr14:50704281-50779266:-,C14orf142->chr14:93669239-93673439:-,chromosome_14_open_reading_frame_142	FTC133_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	RAD23A--GADD45GIP1	2	0	RAD23A	1166	chr19:13056834:+	GADD45GIP1	10549	chr19:13065340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LOCAL_INVERSION:+:-:[516],RAD23A->Oncogene{Bushman},RAD23_homolog_A,_nucleotide_excision_repair_protein,chr19:13056669-13064456:+,GADD45GIP1->GADD45G_interacting_protein_1,Oncogene{Bushman},chr19:13064972-13068050:-	FTC133_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	RP11-417J8.3--TEKT4	2	0	RP11-417J8.3	3008	chr1:142621059:+	TEKT4	18977	chr2:95540521:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	RP11-417J8.3->chr1:142618769-142729975:+,TEKT4->chr2:95537178-95542574:+,tektin_4	FTC133_THYROID	1	1	0.0208	TRUE	0	5	0	1	5	TRUE	ACH-000903
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	222	107	NPM1	4640	chr5:170818803:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	380	0	0.46	1	1.7972	0.8662	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	2.6634	TRUE	0	0	0	6	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUCKS1--TATDN3	16	0	NUCKS1	1320	chr1:205719085:-	TATDN3	22086	chr1:212976043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1295	0	NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1,TATDN3->TatD_DNase_domain_containing_3,chr1:212965170-212989968:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1295	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC079305.11--AC073636.1	4	0	AC079305.11	3370	chr2:177959303:-	AC073636.1	12747	chr2:177711105:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	AC079305.11->chr2:177855236-178029244:-,AC073636.1->chr2:177710721-177714156:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0324	TRUE	1	14	0	1	14	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMC4--RFXAP	4	0	SMC4	22193	chr3:160149613:+	RFXAP	28996	chr13:37394026:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4,RFXAP->chr13:37393361-37403241:+,regulatory_factor_X_associated_protein	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AARS--SHKBP1	3	0	AARS	18933	chr16:70286740:-	SHKBP1	32179	chr19:41095032:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0243	0	AARS->alanyl-tRNA_synthetase,chr16:70286198-70323446:-,SHKBP1->SH3KBP1_binding_protein_1,chr19:41082757-41097305:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATXN2L--SDCCAG8	3	0	ATXN2L	11610	chr16:28846493:+	SDCCAG8	36640	chr1:243579051:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0243	0	ATXN2L->ataxin_2_like,chr16:28834356-28848558:+,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NEAT1--EIF4G2	3	0	NEAT1	2894	chr11:65192138:+	EIF4G2	36075	chr11:10821350:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0243	0	NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PNISR--RP11-798M19.3	3	0	PNISR	11871	chr6:99852479:-	RP11-798M19.3	22499	chr4:174247871:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,RP11-798M19.3->chr4:174243357-174250845:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKDC--SH3BP2	3	0	PRKDC	26650	chr8:48812933:-	SH3BP2	106827	chr4:2831220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,SH3BP2->Oncogene{Bushman},SH3_domain_binding_protein_2,chr4:2794750-2842825:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	QKI--MBOAT1	3	0	QKI	10630	chr6:163956157:+	MBOAT1	32200	chr6:20153000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,MBOAT1->chr6:20100935-20212670:-,membrane_bound_O-acyltransferase_domain_containing_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1GDS1--MICU2	3	0	RAP1GDS1	9352	chr4:99313231:+	MICU2	39988	chr13:22069457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,MICU2->chr13:22066836-22178353:-,mitochondrial_calcium_uptake_2	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3B1--ADD2	3	0	SF3B1	8297	chr2:198274665:-	ADD2	51218	chr2:70889650:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0243	0	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,ADD2->adducin_2,chr2:70834750-70995357:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM52--SRP9	3	0	TRIM52	2118	chr5:180687002:-	SRP9	10044	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	TRIM52->chr5:180681417-180688119:-,tripartite_motif_containing_52,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VWA8--LDLR	3	0	VWA8	14156	chr13:42404665:-	LDLR	61663	chr19:11217241:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8,LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADAMTS6--NAMPT	2	0	ADAMTS6	7932	chr5:64747302:-	NAMPT	52718	chr7:105893597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	ADAMTS6->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_6,chr5:64444563-64777747:-,NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGFG1--HABP4	2	0	AGFG1	1437	chr2:228337304:+	HABP4	30512	chr9:99227619:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,HABP4->chr9:99212483-99253618:+,hyaluronan_binding_protein_4	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALG13--ERCC6L	2	0	ALG13	29581	chrX:111000990:+	ERCC6L	36715	chrX:71428548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	ALG13->ALG13,_UDP-N-acetylglucosaminyltransferase_subunit,chrX:110909043-111003877:+,ERCC6L->chrX:71424510-71458897:-,excision_repair_cross-complementation_group_6_like	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--CTD-2410N18.5	2	0	ANKRD11	4629	chr16:89484692:-	CTD-2410N18.5	39557	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,CTD-2410N18.5->chr5:133502861-133561762:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	APC--RBCK1	2	0	APC	7288	chr5:112111434:+	RBCK1	38692	chr20:398170:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASMTL--TSPAN4	2	0	ASMTL	13887	chrX:1536866:-	TSPAN4	22173	chr11:847201:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	ASMTL->acetylserotonin_O-methyltransferase-like,chrX:1522032-1572655:-,chrY:1472032-1522655:-,TSPAN4->chr11:842808-867116:+,tetraspanin_4	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf62--TBCD	2	0	C17orf62	1130	chr17:80408576:-	TBCD	50251	chr17:80882815:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62,TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTA-211A9.5--LMNB1	2	0	CTA-211A9.5	1221	chr22:27068950:+	LMNB1	24925	chr5:126147465:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	CTA-211A9.5->chr22:27068730-27176170:+,LMNB1->chr5:126112315-126172712:+,lamin_B1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTSH--NSUN2	2	0	CTSH	2311	chr15:79237233:-	NSUN2	29791	chr5:6611911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	CTSH->Oncogene{Bushman},cathepsin_H,chr15:79213400-79241916:-,NSUN2->NOP2/Sun_RNA_methyltransferase_family_member_2,chr5:6599352-6633404:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTSL--B3GNTL1	2	0	CTSL	1880	chr9:90341313:+	B3GNTL1	11136	chr17:81006661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	CTSL->cathepsin_L,chr9:90340434-90346308:+,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND1C--HDC	2	0	DENND1C	1879	chr19:6481690:-	HDC	21848	chr15:50546861:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	DENND1C->DENN_domain_containing_1C,chr19:6467218-6482568:-,HDC->chr15:50534144-50558223:-,histidine_decarboxylase	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND6B--SF3B3	2	0	DENND6B	1249	chr22:50765241:-	SF3B3	26780	chr16:70578341:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-,SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--LEMD3	2	0	FAM60A	2035	chr12:31478958:-	LEMD3	21476	chr12:65604706:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNPAT--PICALM	2	0	GNPAT	1250	chr1:231377202:+	PICALM	21288	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	GNPAT->chr1:231376953-231413719:+,glyceronephosphate_O-acyltransferase,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPHN--LINC00871	2	0	GPHN	11852	chr14:67346751:+	LINC00871	43639	chr14:46907384:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,LINC00871->chr14:46410146-46971026:+,long_intergenic_non-protein_coding_RNA_871	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPR--PPP2R5C	2	0	HNRNPR	4150	chr1:23664247:-	PPP2R5C	53151	chr14:102378738:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IRF4--STK24	2	0	IRF4	8497	chr6:401777:+	STK24	22423	chr13:99171727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	IRF4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:391739-411447:+,interferon_regulatory_factor_4,STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIF27--PCSK5	2	0	KIF27	2442	chr9:86530209:-	PCSK5	35951	chr9:78722167:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	KIF27->chr9:86451613-86536342:-,kinesin_family_member_27,PCSK5->chr9:78505560-78977255:+,proprotein_convertase_subtilisin/kexin_type_5	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LEPR--RFC5	2	0	LEPR	2252	chr1:65891061:+	RFC5	39925	chr12:118456877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	LEPR->chr1:65886248-66107242:+,leptin_receptor,RFC5->chr12:118451393-118470935:+,replication_factor_C_subunit_5	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LUC7L2--CABIN1	2	0	LUC7L2	11224	chr7:139102475:+	CABIN1	45125	chr22:24509533:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+,CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFS2--HDC	2	0	NDUFS2	7979	chr1:161179385:+	HDC	20201	chr15:50546861:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	NDUFS2->NADH:ubiquinone_oxidoreductase_core_subunit_S2,chr1:161166894-161184185:+,HDC->chr15:50534144-50558223:-,histidine_decarboxylase	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOL10--FIP1L1	2	0	NOL10	5441	chr2:10813646:-	FIP1L1	30983	chr4:54249940:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	NOL10->chr2:10710892-10830101:-,nucleolar_protein_10,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP133--CDADC1	2	0	NUP133	19779	chr1:229600371:-	CDADC1	36204	chr13:49833482:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	NUP133->Oncogene{Bushman},chr1:229577045-229644103:-,nucleoporin_133kDa,CDADC1->chr13:49822047-49867618:+,cytidine_and_dCMP_deaminase_domain_containing_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4D--ZSWIM6	2	0	PDE4D	27343	chr5:58511603:-	ZSWIM6	60176	chr5:60768508:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	QSER1--LDHA	2	0	QSER1	13432	chr11:32979632:+	LDHA	34285	chr11:18422384:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAD51--PLEKHO2	2	0	RAD51	9458	chr15:41021022:+	PLEKHO2	21322	chr15:65157098:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+,PLEKHO2->chr15:65134088-65160206:+,pleckstrin_homology_domain_containing_O2	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBBP7--TSPAN9	2	0	RBBP7	6902	chrX:16871805:-	TSPAN9	30235	chr12:3392211:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RBBP7->Oncogene{Bushman},chrX:16857406-16888537:-,retinoblastoma_binding_protein_7,TSPAN9->chr12:3186521-3395730:+,tetraspanin_9	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM45--BUB3	2	0	RBM45	8975	chr2:178990911:+	BUB3	25398	chr10:124924563:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RBM45->RNA_binding_motif_protein_45,chr2:178977151-179003738:+,BUB3->BUB3,_mitotic_checkpoint_protein,chr10:124913793-124924886:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RIPK1--UBE2J1	2	0	RIPK1	2307	chr6:3068895:+	UBE2J1	20333	chr6:90053475:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RIPK1->chr6:3064225-3115421:+,receptor_interacting_serine/threonine_kinase_1,UBE2J1->chr6:90036344-90062567:-,ubiquitin_conjugating_enzyme_E2_J1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RLF--MYCL	2	0	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	10	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF115--VDAC3	2	0	RNF115	8125	chr1:145683647:+	VDAC3	33145	chr8:42262889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,VDAC3->chr8:42249142-42263415:+,voltage_dependent_anion_channel_3	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL4--INSIG1	2	0	RPL4	5555	chr15:66795396:-	INSIG1	16204	chr7:155093961:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4,INSIG1->chr7:155089486-155101945:+,insulin_induced_gene_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAF8--TULP4	2	0	SCAF8	1606	chr6:155055064:+	TULP4	36295	chr6:158882595:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	SCAF8->SR-related_CTD_associated_factor_8,chr6:155054459-155155192:+,TULP4->chr6:158733692-158932860:+,tubby_like_protein_4	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SND1--TMEM243	2	0	SND1	13407	chr7:127347701:+	TMEM243	45607	chr7:86828373:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,TMEM243->chr7:86825478-86849903:-,transmembrane_protein_243	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC11--RNF149	2	0	TRAPPC11	2406	chr4:184585224:+	RNF149	35647	chr2:101902639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	TRAPPC11->chr4:184580420-184634745:+,trafficking_protein_particle_complex_11,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTI1--DCAF8	2	0	TTI1	1065	chr20:36661806:-	DCAF8	36881	chr1:160188758:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-,DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VPS8--B3GNTL1	2	0	VPS8	27024	chr3:184587316:+	B3GNTL1	66241	chr17:81006661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VWDE--GLCCI1	2	0	VWDE	1283	chr7:12443285:-	GLCCI1	37597	chr7:8043538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,GLCCI1->chr7:8008425-8133902:+,glucocorticoid_induced_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XPO5--CARHSP1	2	0	XPO5	20449	chr6:43514308:-	CARHSP1	39456	chr16:8953192:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	XPO5->chr6:43490072-43543812:-,exportin_5,CARHSP1->calcium_regulated_heat_stable_protein_1,chr16:8946799-8962866:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF133--RER1	2	0	ZNF133	1128	chr20:18269248:+	RER1	18589	chr1:2327223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	ZNF133->chr20:18269121-18297640:+,zinc_finger_protein_133,RER1->chr1:2323267-2336883:+,retention_in_endoplasmic_reticulum_sorting_receptor_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF655--GAK	2	0	ZNF655	4083	chr7:99159596:+	GAK	27254	chr4:887797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	ZNF655->chr7:99156029-99174076:+,zinc_finger_protein_655,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPN12--SH2D4A	1	1	PTPN12	1371	chr7:77166962:+	SH2D4A	39293	chr8:19250829:+	ONLY_REF_SPLICE	YES	8	12	0.2	0.14	0.0081	0.0081	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,SH2D4A->SH2_domain_containing_4A,chr8:19171128-19253729:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.2	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	269	101	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	44	20	0.89	0.95	2.4727	0.9284	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.95	3.4011	TRUE	0	2	1	16	2	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE3C--MNX1-AS2	101	7	UBE3C	1426	chr7:156932032:+	MNX1-AS2	34028	chr7:156799571:+	ONLY_REF_SPLICE	YES	7	0	0.94	1	0.9284	0.0643	UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C,MNX1-AS2->MNX1_antisense_RNA_2,chr7:156799001-156799826:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.9927	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR89B--CTD-2104P17.1	48	24	GPR89B	5011	chr1:147416212:+	CTD-2104P17.1	22052	chr17:19532902:+	INCL_NON_REF_SPLICE	YES	66	2	0.52	0.97	0.4412	0.2206	GPR89B->G_protein-coupled_receptor_89B,chr1:147400506-147465753:+,CTD-2104P17.1->chr17:19519102-19537138:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.97	0.6618	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	48	16	ABL1	1510	chr9:133589842:+	BCR	40306	chr22:23632526:+	ONLY_REF_SPLICE	YES	8	46	0.89	0.58	0.4412	0.1471	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.89	0.5883	TRUE	0	0	0	6	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC47--SCN4A	37	25	CCDC47	3676	chr17:61850772:-	SCN4A	22031	chr17:62045715:-	ONLY_REF_SPLICE	YES	218	0	0.22	1	0.3401	0.2298	CCDC47->chr17:61822610-61853711:-,coiled-coil_domain_containing_47,SCN4A->chr17:62015914-62050278:-,sodium_voltage-gated_channel_alpha_subunit_4	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.5699	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	4	99	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	44	19	0.7	0.84	0.0368	0.91	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.84	0.9468	TRUE	0	2	1	16	2	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE3C--MNX1-AS1	23	0	UBE3C	1426	chr7:156932032:+	MNX1-AS1	34961	chr7:156808583:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2114	0	UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C,MNX1-AS1->MNX1_antisense_RNA_1_(head_to_head),chr7:156803499-156809120:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	15	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1379	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1379	TRUE	0	6	0	9	2	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR89B--CTD-2104P17.1	3	24	GPR89B	5011	chr1:147416212:+	CTD-2104P17.1	22015	chr17:19532865:+	INCL_NON_REF_SPLICE	YES	66	1	0.29	0.96	0.0276	0.2206	GPR89B->G_protein-coupled_receptor_89B,chr1:147400506-147465753:+,CTD-2104P17.1->chr17:19519102-19537138:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.96	0.2482	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNAS	5	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.046	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.046	TRUE	0	3	0	13	2	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	1	5	ABL1	1510	chr9:133589842:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	8	69	0.43	0.08	0.0092	0.046	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.43	0.0552	TRUE	0	0	0	6	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EXD3--EHMT1	2	0	EXD3	1149	chr9:140317566:-	EHMT1	37413	chr9:140611078:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1},EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	3	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS7--STX8	2	0	GAS7	10425	chr17:9923094:-	STX8	47311	chr17:9281970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GAS7->Oncogene{Bushman},chr17:9813926-10101868:-,growth_arrest_specific_7,STX8->chr17:9153788-9479908:-,syntaxin_8	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYSM1--SRSF1	2	0	MYSM1	12420	chr1:59139245:-	SRSF1	30708	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	MYSM1->Myb_like,_SWIRM_and_MPN_domains_1,chr1:59120411-59165764:-,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--TRIM65	2	0	PPP1R12C	8950	chr19:55610152:-	TRIM65	20472	chr17:73888931:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,TRIM65->chr17:73876416-73893084:-,tripartite_motif_containing_65	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	1	0	1	1	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--UBB	2	0	RPS3	2292	chr11:75111821:+	UBB	14087	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UBB->chr17:16284112-16286059:+,ubiquitin_B	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	6	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG8--WHSC1	2	0	SNHG8	1429	chr4:119200292:+	WHSC1	7425	chr4:1893893:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	1	1	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	2	0	SPON2	4412	chr4:1195057:-	CTBP1	30074	chr4:1222131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	1	0	0	4	0	TRUE	ACH-000321
NCIH2196_LUNG	ZNF33A--RP11-393J16.4	77	12	ZNF33A	3703	chr10:38306314:+	RP11-393J16.4	18018	chr10:38281255:+	ONLY_REF_SPLICE	YES	41	0	0.68	1	0.8108	0.1264	LOCAL_REARRANGEMENT:+:[18183],ZNF33A->chr10:38299578-38354016:+,zinc_finger_protein_33A,RP11-393J16.4->chr10:38265753-38281395:+	NCIH2196_LUNG	0.68	1	0.9372	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	KAZN--FHAD1	30	9	KAZN	8963	chr1:15370655:+	FHAD1	50668	chr1:15653555:+	ONLY_REF_SPLICE	YES	14	1	0.74	0.97	0.3159	0.0948	KAZN->chr1:14925200-15444539:+,kazrin,_periplakin_interacting_protein,FHAD1->chr1:15573768-15726779:+,forkhead-associated_(FHA)_phosphopeptide_binding_domain_1	NCIH2196_LUNG	0.74	0.97	0.4107	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	ABCB8--CACNA1I	28	15	ABCB8	13216	chr7:150739195:+	CACNA1I	36045	chr22:40054157:+	ONLY_REF_SPLICE	YES	29	2	0.6	0.96	0.2948	0.158	ABCB8->ATP_binding_cassette_subfamily_B_member_8,Oncogene{Bushman},chr7:150725510-150744869:+,CACNA1I->calcium_voltage-gated_channel_subunit_alpha1_I,chr22:39966758-40085742:+	NCIH2196_LUNG	0.6	0.96	0.4528	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	ETV6--BCL2L14	30	7	ETV6	1307	chr12:11803094:+	BCL2L14	31171	chr12:12232233:+	ONLY_REF_SPLICE	YES	40	0	0.48	1	0.3159	0.0737	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,BCL2L14->BCL2_like_14,chr12:12202778-12364018:+	NCIH2196_LUNG	0.48	1	0.3896	TRUE	0	1	0	1	1	TRUE	ACH-000399
NCIH2196_LUNG	EIF2A--MED12L	12	11	EIF2A	10407	chr3:150286079:+	MED12L	25052	chr3:150873948:+	ONLY_REF_SPLICE	YES	106	3	0.18	0.88	0.1264	0.1158	{Klijn_CCL:Lung=1},EIF2A->chr3:150264465-150302029:+,eukaryotic_translation_initiation_factor_2A,MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like	NCIH2196_LUNG	0.18	0.88	0.2422	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	BEND3--PDSS2	14	0	BEND3	1180	chr6:107436294:-	PDSS2	25697	chr6:107475981:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1474	0	LOCAL_REARRANGEMENT:-:[37288],BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-,PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2	NCIH2196_LUNG	1	1	0.1474	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	RERE--ENO1	10	15	RERE	8908	chr1:8674620:-	ENO1	42962	chr1:8934976:-	ONLY_REF_SPLICE	YES	119	502	0.17	0.05	0.1053	0.158	LOCAL_REARRANGEMENT:-:[43359],RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	NCIH2196_LUNG	0.05	0.17	0.2633	TRUE	0	1	0	1	1	TRUE	ACH-000399
NCIH2196_LUNG	NDUFAF6--RP11-267M23.7	11	7	NDUFAF6	1161	chr8:95908155:+	RP11-267M23.7	36149	chr8:95606649:+	INCL_NON_REF_SPLICE	YES	15	0	0.55	1	0.1158	0.0737	NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+,RP11-267M23.7->chr8:95606639-95606829:+	NCIH2196_LUNG	0.55	1	0.1895	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	LIMCH1--UCHL1	9	10	LIMCH1	2330	chr4:41362953:+	UCHL1	52640	chr4:41258610:+	ONLY_REF_SPLICE	YES	203	0	0.09	1	0.0948	0.1053	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[91152],LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1	NCIH2196_LUNG	0.09	1	0.2001	TRUE	0	1	0	2	1	TRUE	ACH-000399
NCIH2196_LUNG	RP11-347C18.3--RP11-267M23.7	10	2	RP11-347C18.3	1773	chr8:95963037:+	RP11-267M23.7	5371	chr8:95606649:+	INCL_NON_REF_SPLICE	YES	8	0	0.6	1	0.1053	0.0211	RP11-347C18.3->chr8:95962265-95963624:+,RP11-267M23.7->chr8:95606639-95606829:+	NCIH2196_LUNG	0.6	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	NCKAP5L--RACGAP1	10	0	NCKAP5L	1429	chr12:50222105:-	RACGAP1	25180	chr12:50410502:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1053	0	NCKAP5L->NCK_associated_protein_5_like,chr12:50184929-50222533:-,RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-	NCIH2196_LUNG	1	1	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	KIAA1109--RP11-362K2.2	8	3	KIAA1109	20135	chr4:123132250:+	RP11-362K2.2	103141	chr12:59206196:+	ONLY_REF_SPLICE	YES	15	1	0.42	0.92	0.0842	0.0316	KIAA1109->KIAA1109,chr4:123073488-123283913:+,RP11-362K2.2->chr12:58937907-59206842:+	NCIH2196_LUNG	0.42	0.92	0.1158	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	ETV6--BCL2L14	6	2	ETV6	1307	chr12:11803094:+	BCL2L14	32611	chr12:12240147:+	ONLY_REF_SPLICE	YES	40	9	0.17	0.47	0.0632	0.0211	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,BCL2L14->BCL2_like_14,chr12:12202778-12364018:+	NCIH2196_LUNG	0.17	0.47	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	KAZN--FHAD1	4	10	KAZN	8963	chr1:15370655:+	FHAD1	46956	chr1:15644320:+	ONLY_REF_SPLICE	YES	14	0	0.5	1	0.0421	0.1053	KAZN->chr1:14925200-15444539:+,kazrin,_periplakin_interacting_protein,FHAD1->chr1:15573768-15726779:+,forkhead-associated_(FHA)_phosphopeptide_binding_domain_1	NCIH2196_LUNG	0.5	1	0.1474	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	RPS6KB1--VMP1	5	6	RPS6KB1	1240	chr17:57970686:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	36	141	0.23	0.07	0.0527	0.0632	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH2196_LUNG	0.07	0.23	0.1159	TRUE	0	2	0	6	2	TRUE	ACH-000399
NCIH2196_LUNG	KIAA1109--RP11-362K2.2	4	6	KIAA1109	20135	chr4:123132250:+	RP11-362K2.2	101530	chr12:59199723:+	ONLY_REF_SPLICE	YES	15	0	0.4	1	0.0421	0.0632	KIAA1109->KIAA1109,chr4:123073488-123283913:+,RP11-362K2.2->chr12:58937907-59206842:+	NCIH2196_LUNG	0.4	1	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	SETD7--MAML3	4	3	SETD7	19923	chr4:140439039:-	MAML3	33638	chr4:140812121:-	ONLY_REF_SPLICE	YES	54	20	0.11	0.26	0.0421	0.0316	SETD7->SET_domain_containing_lysine_methyltransferase_7,chr4:140417095-140527853:-,MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3	NCIH2196_LUNG	0.11	0.26	0.0737	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	RPS6KB1--VMP1	3	4	RPS6KB1	1240	chr17:57970686:+	VMP1	32966	chr17:57842413:+	ONLY_REF_SPLICE	YES	36	114	0.16	0.06	0.0316	0.0421	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH2196_LUNG	0.06	0.16	0.0737	TRUE	0	2	0	6	2	TRUE	ACH-000399
NCIH2196_LUNG	AP003900.6--AC008132.1	1	11	AP003900.6	2187	chr21:11172043:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	9	0	0.57	1	0.0105	0.1158	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH2196_LUNG	0.57	1	0.1263	TRUE	0	0	0	12	0	TRUE	ACH-000399
NCIH2196_LUNG	KAZN--FHAD1	1	10	KAZN	8963	chr1:15370655:+	FHAD1	48061	chr1:15650948:+	ONLY_REF_SPLICE	NO	14	1	0.44	0.92	0.0105	0.1053	KAZN->chr1:14925200-15444539:+,kazrin,_periplakin_interacting_protein,FHAD1->chr1:15573768-15726779:+,forkhead-associated_(FHA)_phosphopeptide_binding_domain_1	NCIH2196_LUNG	0.44	0.92	0.1158	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	ETV6--BCL2L14	1	8	ETV6	3594	chr12:11905513:+	BCL2L14	22875	chr12:12204730:+	ONLY_REF_SPLICE	YES	53	0	0.15	1	0.0105	0.0842	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,BCL2L14->BCL2_like_14,chr12:12202778-12364018:+	NCIH2196_LUNG	0.15	1	0.0947	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	PIGU--NCOA6	3	0	PIGU	8245	chr20:33203846:-	NCOA6	44726	chr20:33303169:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:-:[19812],PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	NCIH2196_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	UBAP1--UBE2R2	3	0	UBAP1	8073	chr9:34242106:+	UBE2R2	17274	chr9:33900172:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Muscle=[count:6=pct:2.6],Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	NCIH2196_LUNG	1	1	0.0316	TRUE	0	1	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	CCDC154--IFT140	2	2	CCDC154	4659	chr16:1488620:-	IFT140	43655	chr16:1561151:-	ONLY_REF_SPLICE	YES	3	26	0.57	0.13	0.0211	0.0211	LOCAL_REARRANGEMENT:-:[65871],CCDC154->chr16:1484384-1494557:-,coiled-coil_domain_containing_154,IFT140->chr16:1560428-1662111:-,intraflagellar_transport_140	NCIH2196_LUNG	0.13	0.57	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	NRG1--NRG1-IT1	2	2	NRG1	2344	chr8:31498245:+	NRG1-IT1	37780	chr8:31996731:+	ONLY_REF_SPLICE	YES	36	4	0.1	0.5	0.0211	0.0211	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	NCIH2196_LUNG	0.1	0.5	0.0422	TRUE	0	3	0	4	3	TRUE	ACH-000399
NCIH2196_LUNG	ANKHD1--CYSTM1	2	0	ANKHD1	1460	chr5:139781858:+	CYSTM1	47050	chr5:139622890:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1	NCIH2196_LUNG	1	1	0.0211	TRUE	1	2	1	5	0	TRUE	ACH-000399
NCIH2196_LUNG	ANKRD36C--ATP6V0B	2	0	ANKRD36C	1282	chr2:96657260:-	ATP6V0B	69657	chr1:44441762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ANKRD36C->ankyrin_repeat_domain_36C,chr2:96514587-96657541:-,ATP6V0B->ATPase_H+_transporting_V0_subunit_b,chr1:44440159-44443967:+	NCIH2196_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	B3GNTL1--MED23	2	0	B3GNTL1	2770	chr17:81006347:-	MED23	45427	chr6:131917828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,MED23->chr6:131895106-131949369:-,mediator_complex_subunit_23	NCIH2196_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	GOLGA8A--ZC3H13	2	0	GOLGA8A	15953	chr15:34692913:-	ZC3H13	40862	chr13:46577471:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	NCIH2196_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	KIAA0232--MRFAP1	2	0	KIAA0232	13721	chr4:6865910:+	MRFAP1	24952	chr4:6643457:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	KIAA0232->KIAA0232,chr4:6783102-6885897:+,MRFAP1->Morf4_family_associated_protein_1,chr4:6641818-6644472:+	NCIH2196_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	KIAA1958--HSDL2	2	0	KIAA1958	1272	chr9:115249398:+	HSDL2	32584	chr9:115221729:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[14437],KIAA1958->KIAA1958,chr9:115249127-115431677:+,HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2	NCIH2196_LUNG	1	1	0.0211	TRUE	0	1	0	2	1	TRUE	ACH-000399
NCIH2196_LUNG	RBM47--APBB2	2	0	RBM47	2480	chr4:40631413:-	APBB2	49981	chr4:40825776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH2196_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	REPS1--HECA	2	0	REPS1	1732	chr6:139308667:-	HECA	34072	chr6:139495522:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},REPS1->RALBP1_associated_Eps_domain_containing_1,chr6:139224630-139309398:-,HECA->chr6:139456249-139501939:+,hdc_homolog,_cell_cycle_regulator	NCIH2196_LUNG	1	1	0.0211	TRUE	1	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	NCIH2196_LUNG	1	1	0.0211	TRUE	0	1	0	17	0	TRUE	ACH-000399
NCIH2196_LUNG	STRBP--DENND1A	2	0	STRBP	21385	chr9:125895124:-	DENND1A	46838	chr9:126345549:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	STRBP->chr9:125871779-126030855:-,spermatid_perinuclear_RNA_binding_protein,DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-	NCIH2196_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	TYMS--SEPT9	2	0	TYMS	4286	chr18:662320:+	SEPT9	45878	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	{Klijn_CCL:Lung=1,Urinary_Bladder=1},TYMS->chr18:657604-673578:+,thymidylate_synthetase,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	NCIH2196_LUNG	1	1	0.0211	TRUE	0	9	0	5	1	TRUE	ACH-000399
NCIH2196_LUNG	LIMCH1--UCHL1	1	1	LIMCH1	1197	chr4:41361820:+	UCHL1	52640	chr4:41258610:+	ONLY_REF_SPLICE	NO	27	0	0.07	1	0.0105	0.0105	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[91152],LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1	NCIH2196_LUNG	0.07	1	0.021	TRUE	0	1	0	1	1	TRUE	ACH-000399
NCIH2196_LUNG	RFX3--RP11-509J21.1	1	1	RFX3	1258	chr9:3525747:-	RP11-509J21.1	35680	chr9:3546778:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0105	0.0105	LOCAL_INVERSION:-:+:[719],RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,RP11-509J21.1->chr9:3526723-3671646:+	NCIH2196_LUNG	0.5	1	0.021	TRUE	0	0	0	2	0	TRUE	ACH-000399
KURAMOCHI_OVARY	EIF5A--NLRP1	48	10	EIF5A	1754	chr17:7211071:+	NLRP1	14204	chr17:5463363:-	ONLY_REF_SPLICE	YES	79	0	0.42	1	0.6393	0.1332	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-	KURAMOCHI_OVARY	0.42	1	0.7725	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	MINK1--ZBTB4	27	21	MINK1	1253	chr17:4736935:+	ZBTB4	23883	chr17:7370646:-	ONLY_REF_SPLICE	YES	96	40	0.33	0.55	0.3596	0.2797	MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1,ZBTB4->chr17:7362685-7387582:-,zinc_finger_and_BTB_domain_containing_4	KURAMOCHI_OVARY	0.33	0.55	0.6393	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	RNF115--ARNTL2	23	10	RNF115	5980	chr1:145663367:+	ARNTL2	25936	chr12:27529279:+	ONLY_REF_SPLICE	YES	100	57	0.25	0.37	0.3063	0.1332	{Klijn_CCL:Ovary=1},RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+	KURAMOCHI_OVARY	0.25	0.37	0.4395	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	NEMF--L2HGDH	17	19	NEMF	30268	chr14:50253436:-	L2HGDH	40967	chr14:50760964:-	ONLY_REF_SPLICE	YES	62	27	0.37	0.57	0.2264	0.2531	{Klijn_CCL:Ovary=1},NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,L2HGDH->L-2-hydroxyglutarate_dehydrogenase,chr14:50704281-50779266:-	KURAMOCHI_OVARY	0.37	0.57	0.4795	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	RNF135--C17orf78	16	4	RNF135	5968	chr17:29315124:+	C17orf78	18762	chr17:35746181:+	ONLY_REF_SPLICE	YES	6	1	0.77	0.95	0.2131	0.0533	{Klijn_CCL:Ovary=1},RNF135->chr17:29295803-29326929:+,ring_finger_protein_135,C17orf78->chr17:35732928-35749662:+,chromosome_17_open_reading_frame_78	KURAMOCHI_OVARY	0.77	0.95	0.2664	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	MINK1--ZBTB4	8	21	MINK1	2369	chr17:4762623:+	ZBTB4	23883	chr17:7370646:-	ONLY_REF_SPLICE	YES	110	40	0.21	0.42	0.1065	0.2797	MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1,ZBTB4->chr17:7362685-7387582:-,zinc_finger_and_BTB_domain_containing_4	KURAMOCHI_OVARY	0.21	0.42	0.3862	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	ZNF148--HEG1	8	9	ZNF148	1253	chr3:125093946:-	HEG1	43291	chr3:124696790:-	ONLY_REF_SPLICE	YES	35	170	0.33	0.09	0.1065	0.1199	ZNF148->chr3:124944405-125094198:-,zinc_finger_protein_148,HEG1->chr3:124684554-124774802:-,heart_development_protein_with_EGF_like_domains_1	KURAMOCHI_OVARY	0.09	0.33	0.2264	TRUE	0	0	0	2	0	TRUE	ACH-000524
KURAMOCHI_OVARY	DHX34--ZNF132	7	5	DHX34	4278	chr19:47858519:+	ZNF132	23831	chr19:58946578:-	INCL_NON_REF_SPLICE	YES	45	3	0.21	0.8	0.0932	0.0666	DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+,ZNF132->chr19:58944181-58951589:-,zinc_finger_protein_132	KURAMOCHI_OVARY	0.21	0.8	0.1598	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	RNF135--C17orf78	6	6	RNF135	5968	chr17:29315124:+	C17orf78	17069	chr17:35742947:+	ONLY_REF_SPLICE	YES	6	0	0.67	1	0.0799	0.0799	{Klijn_CCL:Ovary=1},RNF135->chr17:29295803-29326929:+,ring_finger_protein_135,C17orf78->chr17:35732928-35749662:+,chromosome_17_open_reading_frame_78	KURAMOCHI_OVARY	0.67	1	0.1598	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	PLXNB2--MTND2P28	7	0	PLXNB2	12084	chr22:50721194:-	MTND2P28	22906	chr1:565055:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0932	0	PLXNB2->chr22:50713408-50746056:-,plexin_B2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	KURAMOCHI_OVARY	1	1	0.0932	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	EIF5A--NLRP1	6	1	EIF5A	1754	chr17:7211071:+	NLRP1	16909	chr17:5456876:-	ONLY_REF_SPLICE	YES	79	24	0.08	0.23	0.0799	0.0133	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-	KURAMOCHI_OVARY	0.08	0.23	0.0932	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	STX8--FBXW10	5	4	STX8	11836	chr17:9395146:-	FBXW10	22466	chr17:18651254:+	ONLY_REF_SPLICE	YES	38	0	0.19	1	0.0666	0.0533	STX8->chr17:9153788-9479908:-,syntaxin_8,FBXW10->F-box_and_WD_repeat_domain_containing_10,chr17:18647326-18682662:+	KURAMOCHI_OVARY	0.19	1	0.1199	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	EIF5A--NLRP1	2	13	EIF5A	2115	chr17:7211432:+	NLRP1	14204	chr17:5463363:-	ONLY_REF_SPLICE	YES	405	0	0.04	1	0.0266	0.1731	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-	KURAMOCHI_OVARY	0.04	1	0.1997	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	MYO9A--PARP6	3	4	MYO9A	1898	chr15:72410021:-	PARP6	70896	chr15:72559163:-	ONLY_REF_SPLICE	YES	8	59	0.47	0.11	0.04	0.0533	MYO9A->chr15:72114632-72410918:-,myosin_IXA,PARP6->chr15:72533522-72565340:-,poly(ADP-ribose)_polymerase_family_member_6	KURAMOCHI_OVARY	0.11	0.47	0.0933	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	RNF135--C17orf78	3	1	RNF135	4805	chr17:29311778:+	C17orf78	18762	chr17:35746181:+	ONLY_REF_SPLICE	YES	6	1	0.4	0.8	0.04	0.0133	{Klijn_CCL:Ovary=1},RNF135->chr17:29295803-29326929:+,ring_finger_protein_135,C17orf78->chr17:35732928-35749662:+,chromosome_17_open_reading_frame_78	KURAMOCHI_OVARY	0.4	0.8	0.0533	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	CALM2--LRPPRC	2	0	CALM2	1161	chr2:47403580:-	LRPPRC	41319	chr2:44132919:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,LRPPRC->chr2:44113647-44223144:-,leucine_rich_pentatricopeptide_repeat_containing	KURAMOCHI_OVARY	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	EIF5A--NLRP1	2	0	EIF5A	1117	chr17:7210434:+	NLRP1	14204	chr17:5463363:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-	KURAMOCHI_OVARY	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	PPFIBP1--ATE1	2	0	PPFIBP1	4200	chr12:27731172:+	ATE1	52692	chr10:123600778:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,ATE1->arginyltransferase_1,chr10:123499939-123688316:-	KURAMOCHI_OVARY	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	RLF--MYCL	1	1	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	29	1	0.06	0.67	0.0133	0.0133	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	KURAMOCHI_OVARY	0.06	0.67	0.0266	TRUE	0	0	0	10	0	TRUE	ACH-000524
KURAMOCHI_OVARY	SLC43A2--P2RX1	1	1	SLC43A2	5709	chr17:1516489:-	P2RX1	30623	chr17:3808661:-	ONLY_REF_SPLICE	YES	14	0	0.12	1	0.0133	0.0133	SLC43A2->chr17:1472561-1532180:-,solute_carrier_family_43_member_2,P2RX1->chr17:3799886-3819794:-,purinergic_receptor_P2X_1	KURAMOCHI_OVARY	0.12	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000524
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	130	171	PSMB10	3519	chr16:67968472:-	LCAT	10240	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	0	10	1	0.97	1.5941	2.0969	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	3.691	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAPOLA--AK7	151	80	PAPOLA	2168	chr14:96968937:+	AK7	40553	chr14:96904172:+	ONLY_REF_SPLICE	YES	195	0	0.54	1	1.8517	0.981	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	2.8327	TRUE	0	0	0	3	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	51	108	PSMB10	3291	chr16:67968700:-	LCAT	10240	chr16:67974381:-	ONLY_REF_SPLICE	YES	309	10	0.34	0.94	0.6254	1.3244	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.94	1.9498	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	29	173	PSMB10	3524	chr16:67968467:-	LCAT	10240	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	0	10	1	0.95	0.3556	2.1214	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	2.477	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	17	178	PSMB10	3519	chr16:67968472:-	LCAT	9887	chr16:67974734:-	INCL_NON_REF_SPLICE	YES	0	6	1	0.97	0.2085	2.1827	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	2.3912	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDX3--FAM45A	38	38	PRDX3	5352	chr10:120931894:-	FAM45A	22395	chr10:120889027:+	ONLY_REF_SPLICE	YES	1079	46	0.07	0.62	0.466	0.466	LOCAL_INVERSION:-:+:[29719],PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,FAM45A->chr10:120863598-120897496:+,family_with_sequence_similarity_45_member_A	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.62	0.932	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	8	114	PSMB10	3291	chr16:67968700:-	LCAT	9887	chr16:67974734:-	ONLY_REF_SPLICE	YES	309	6	0.28	0.95	0.0981	1.3979	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.95	1.496	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRK5--IQCE	25	21	GRK5	1381	chr10:120967481:+	IQCE	45526	chr7:2644515:+	ONLY_REF_SPLICE	YES	7	15	0.87	0.75	0.3066	0.2575	GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.87	0.5641	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	5	33	PSMB10	2792	chr16:67969199:-	LCAT	10240	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	727	10	0.05	0.79	0.0613	0.4047	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.79	0.466	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	4	30	PSMB10	2668	chr16:67969323:-	LCAT	10240	chr16:67974381:-	ONLY_REF_SPLICE	YES	717	10	0.05	0.77	0.0491	0.3679	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.77	0.417	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--TUBB	6	0	IGL@	39997	chr22:23054949:+	TUBB	78022	chr6:30691270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0736	0	IGL@->Oncogene{Bushman},TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0736	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM5--UBE2G2	3	0	TMEM5	4639	chr12:64178852:+	UBE2G2	24829	chr21:46193602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0	TMEM5->chr12:64173583-64203338:+,transmembrane_protein_5,UBE2G2->chr21:46188955-46221934:-,ubiquitin_conjugating_enzyme_E2_G2	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRK5--IQCE	1	7	GRK5	1381	chr10:120967481:+	IQCE	46521	chr7:2645510:+	ONLY_REF_SPLICE	NO	7	19	0.53	0.3	0.0123	0.0858	GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.53	0.0981	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRK5--IQCE	2	1	GRK5	1381	chr10:120967481:+	IQCE	49075	chr7:2649678:+	ONLY_REF_SPLICE	YES	7	9	0.3	0.25	0.0245	0.0123	GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.3	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WASH7P--FAM138A	1	5	WASH7P	2640	chr1:24738:-	FAM138A	11262	chr1:35481:-	ONLY_REF_SPLICE	YES	109	2	0.05	0.75	0.0123	0.0613	LOCAL_REARRANGEMENT:-:[4748],WASH7P->WAS_protein_family_homolog_7_pseudogene,chr1:14363-29806:-,FAM138A->chr1:34554-36081:-,family_with_sequence_similarity_138_member_A	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.75	0.0736	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACOX3--PSMB1	2	0	ACOX3	1076	chr4:8442375:-	PSMB1	26059	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	ACOX3->acyl-CoA_oxidase_3,_pristanoyl,chr4:8368009-8442450:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND4A--HAUS1	2	0	DENND4A	1284	chr15:66084348:-	HAUS1	45806	chr18:43698147:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLB1--TRAK1	2	0	GLB1	1220	chr3:33138503:-	TRAK1	29655	chr3:42128596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GLB1->Oncogene{Bushman},chr3:33038100-33138722:-,galactosidase_beta_1,TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM161B--RASA1	2	0	TMEM161B	1756	chr5:87564538:-	RASA1	32583	chr5:86637107:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	TMEM161B->chr5:87485450-87565293:-,transmembrane_protein_161B,RASA1->Oncogene{Bushman},RAS_p21_protein_activator_1,chr5:86563705-86687748:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VPS16--TCP1	2	0	VPS16	1125	chr20:2821473:+	TCP1	18227	chr6:160202142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	VPS16->VPS16,_CORVET/HOPS_core_subunit,chr20:2821349-2847378:+,TCP1->chr6:160199530-160210781:-,t-complex_1	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000167
HCC364_LUNG	PI4K2A--LIFR	6	2	PI4K2A	5368	chr10:99410898:+	LIFR	24941	chr5:38530768:-	ONLY_REF_SPLICE	YES	27	6	0.23	0.57	0.0828	0.0276	PI4K2A->chr10:99344131-99433667:+,chr10:99344131-99436191:+,phosphatidylinositol_4-kinase_type_2_alpha,LIFR->Oncogene{Bushman},chr5:38475065-38608456:-,leukemia_inhibitory_factor_receptor_alpha	HCC364_LUNG	0.23	0.57	0.1104	TRUE	0	0	0	1	0	TRUE	ACH-000575
HCC364_LUNG	RP1-178F15.5--RPLP1	3	1	RP1-178F15.5	1244	chr1:153606573:-	RPLP1	9579	chr15:69745182:+	INCL_NON_REF_SPLICE	YES	41	0	0.09	1	0.0414	0.0138	RP1-178F15.5->chr1:153598808-153606816:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	HCC364_LUNG	0.09	1	0.0552	TRUE	0	0	0	2	0	TRUE	ACH-000575
HCC364_LUNG	B4GALNT3--NINJ2	2	0	B4GALNT3	1182	chr12:569711:+	NINJ2	30098	chr12:675344:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	LOCAL_INVERSION:+:-:[787],B4GALNT3->beta-1,4-N-acetyl-galactosaminyltransferase_3,chr12:569530-672675:+,NINJ2->chr12:673462-772945:-,ninjurin_2	HCC364_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000575
HCC364_LUNG	BOD1--SFXN1	2	0	BOD1	1461	chr5:173043203:-	SFXN1	12967	chr5:174919098:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,SFXN1->chr5:174904065-174956745:+,sideroflexin_1	HCC364_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000575
HCC364_LUNG	CTC-228N24.2--CTC-228N24.3	2	0	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HCC364_LUNG	1	1	0.0276	TRUE	0	1	0	12	1	TRUE	ACH-000575
HCC364_LUNG	TRABD--PPP1R12C	2	0	TRABD	1062	chr22:50624405:+	PPP1R12C	21551	chr19:55607703:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	TRABD->TraB_domain_containing,chr22:50624344-50638027:+,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	HCC364_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000575
HCC1359_LUNG	GS1-124K5.12--TGFBI	72	50	GS1-124K5.12	5666	chr7:66038372:-	TGFBI	13354	chr5:135379747:+	ONLY_REF_SPLICE	YES	70	18	0.64	0.87	0.6969	0.484	GS1-124K5.12->chr7:66010634-66057373:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HCC1359_LUNG	0.64	0.87	1.1809	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	KDM5A--RERG	72	32	KDM5A	5408	chr12:493197:-	RERG	50778	chr12:15274053:-	ONLY_REF_SPLICE	YES	28	12	0.79	0.9	0.6969	0.3097	KDM5A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:389295-498620:-,lysine_demethylase_5A,RERG->RAS_like_estrogen_regulated_growth_inhibitor,chr12:15260717-15501609:-	HCC1359_LUNG	0.79	0.9	1.0066	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	SERPINE2--XRCC5	31	17	SERPINE2	10173	chr2:224856520:-	XRCC5	43290	chr2:217054948:+	ONLY_REF_SPLICE	YES	279	816	0.15	0.06	0.3001	0.1646	{Klijn_CCL:Lung=1},SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2,XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+	HCC1359_LUNG	0.06	0.15	0.4647	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	VMP1--TUBD1	29	13	VMP1	7938	chr17:57816308:+	TUBD1	32995	chr17:57944110:-	ONLY_REF_SPLICE	YES	26	2	0.62	0.95	0.2807	0.1258	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:+:-:[17235],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,TUBD1->chr17:57936851-57970304:-,tubulin_delta_1	HCC1359_LUNG	0.62	0.95	0.4065	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	APP--NCAM2	24	8	APP	5253	chr21:27484296:-	NCAM2	52676	chr21:22838927:+	ONLY_REF_SPLICE	YES	490	0	0.06	1	0.2323	0.0774	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,NCAM2->chr21:22370633-22915650:+,neural_cell_adhesion_molecule_2	HCC1359_LUNG	0.06	1	0.3097	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	XRCC5--HTR2B	21	12	XRCC5	20768	chr2:217026771:+	HTR2B	33038	chr2:231978643:-	ONLY_REF_SPLICE	YES	898	0	0.04	1	0.2033	0.1162	{Klijn_CCL:Lung=1},XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,HTR2B->5-hydroxytryptamine_receptor_2B,chr2:231972944-231989832:-	HCC1359_LUNG	0.04	1	0.3195	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	KDM5A--RERG	19	16	KDM5A	5408	chr12:493197:-	RERG	51835	chr12:15264351:-	ONLY_REF_SPLICE	YES	28	8	0.56	0.81	0.1839	0.1549	KDM5A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:389295-498620:-,lysine_demethylase_5A,RERG->RAS_like_estrogen_regulated_growth_inhibitor,chr12:15260717-15501609:-	HCC1359_LUNG	0.56	0.81	0.3388	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	FUT10--AGAP1	16	6	FUT10	2715	chr8:33318890:-	AGAP1	24785	chr2:236649607:+	ONLY_REF_SPLICE	YES	14	34	0.61	0.39	0.1549	0.0581	FUT10->chr8:33228342-33330940:-,fucosyltransferase_10,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	HCC1359_LUNG	0.39	0.61	0.213	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	DSCAM--RRP1B	14	0	DSCAM	11282	chr21:41684008:-	RRP1B	58066	chr21:45111320:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1355	0	DSCAM->Down_syndrome_cell_adhesion_molecule,chr21:41382926-42219065:-,RRP1B->chr21:45079429-45115958:+,ribosomal_RNA_processing_1B	HCC1359_LUNG	1	1	0.1355	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	DNAJC17--PPP1R14D	10	0	DNAJC17	1109	chr15:41099567:-	PPP1R14D	15722	chr15:41108451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0968	0	LOCAL_REARRANGEMENT:-:[7975],DNAJC17->DnaJ_heat_shock_protein_family_(Hsp40)_member_C17,chr15:41060067-41099675:-,PPP1R14D->chr15:41107650-41120907:-,protein_phosphatase_1_regulatory_inhibitor_subunit_14D	HCC1359_LUNG	1	1	0.0968	TRUE	0	1	0	1	1	TRUE	ACH-000901
HCC1359_LUNG	RUNX1--AF127577.8	9	4	RUNX1	21108	chr21:36421139:-	AF127577.8	45906	chr21:16318876:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.0871	0.0387	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,AF127577.8->chr21:16290855-16319417:+	HCC1359_LUNG	0.87	1	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	GNAZ--LRP1B	8	5	GNAZ	3574	chr22:23438605:+	LRP1B	57501	chr2:141359208:-	ONLY_REF_SPLICE	YES	13	0	0.5	1	0.0774	0.0484	GNAZ->G_protein_subunit_alpha_z,chr22:23412540-23467224:+,LRP1B->ArcherDX_panel,FoundationOne_panel,LDL_receptor_related_protein_1B,chr2:140988992-142889270:-	HCC1359_LUNG	0.5	1	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	TUBD1--RPS6KB1	4	0	TUBD1	12167	chr17:57941025:-	RPS6KB1	20359	chr17:57987923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	LOCAL_INVERSION:-:+:[143],TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	HCC1359_LUNG	1	1	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	GS1-124K5.12--TGFBI	2	7	GS1-124K5.12	1130	chr7:66057244:-	TGFBI	13354	chr5:135379747:+	ONLY_REF_SPLICE	YES	57	18	0.14	0.33	0.0194	0.0678	GS1-124K5.12->chr7:66010634-66057373:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HCC1359_LUNG	0.14	0.33	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	RCAN1--SAMSN1-AS1	3	0	RCAN1	1383	chr21:35987059:-	SAMSN1-AS1	21566	chr21:15967015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1,SAMSN1-AS1->SAMSN1_antisense_RNA_1,chr21:15954523-15970624:+	HCC1359_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	VMP1--TUBD1	2	4	VMP1	7938	chr17:57816308:+	TUBD1	34149	chr17:57941208:-	ONLY_REF_SPLICE	YES	26	5	0.19	0.55	0.0194	0.0387	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:+:-:[17235],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,TUBD1->chr17:57936851-57970304:-,tubulin_delta_1	HCC1359_LUNG	0.19	0.55	0.0581	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	CAB39--AC079612.1	2	1	CAB39	1386	chr2:231577945:+	AC079612.1	19635	chr2:240504713:+	ONLY_REF_SPLICE	YES	54	0	0.05	1	0.0194	0.0097	CAB39->calcium_binding_protein_39,chr2:231577560-231685790:+,AC079612.1->chr2:240499995-240507788:+	HCC1359_LUNG	0.05	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	VMP1--TUBD1	1	5	VMP1	6827	chr17:57814904:+	TUBD1	32995	chr17:57944110:-	ONLY_REF_SPLICE	YES	68	2	0.08	0.75	0.0097	0.0484	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:+:-:[17235],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,TUBD1->chr17:57936851-57970304:-,tubulin_delta_1	HCC1359_LUNG	0.08	0.75	0.0581	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	AGO3--GLIS1	2	0	AGO3	2900	chr1:36411464:+	GLIS1	43236	chr1:54065951:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,GLIS1->GLIS_family_zinc_finger_1,chr1:53971910-54199877:-	HCC1359_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	RP5-1158E12.3--KDM6A	1	1	RP5-1158E12.3	3112	chrX:45708809:-	KDM6A	8911	chrX:44820529:+	ONLY_REF_SPLICE	YES	0	21	1	0.09	0.0097	0.0097	RP5-1158E12.3->chrX:45707328-45710920:-,KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A	HCC1359_LUNG	0.09	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000901
NCIH889_LUNG	RLF--MYCL	3390	1567	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	15	361	1	0.93	38.6468	17.8642	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH889_LUNG	0.93	1	56.511	TRUE	0	0	0	10	0	TRUE	ACH-000297
NCIH889_LUNG	RLF--MYCL	2148	2484	RLF	1264	chr1:40627308:+	MYCL	18060	chr1:40367115:-	ONLY_REF_SPLICE	YES	15	15	1	1	24.4877	28.3182	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH889_LUNG	1	1	52.8059	TRUE	0	0	0	6	0	TRUE	ACH-000297
NCIH889_LUNG	RLF--MYCL	11	1616	RLF	1263	chr1:40627307:+	MYCL	20873	chr1:40363661:-	INCL_NON_REF_SPLICE	YES	15	388	0.99	0.81	0.1254	18.4228	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH889_LUNG	0.81	0.99	18.5482	TRUE	0	0	0	10	0	TRUE	ACH-000297
NCIH889_LUNG	RLF--MYCL	11	1529	RLF	1264	chr1:40627308:+	MYCL	20894	chr1:40363640:-	INCL_NON_REF_SPLICE	YES	15	360	0.99	0.81	0.1254	17.431	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH889_LUNG	0.81	0.99	17.5564	TRUE	0	0	0	10	0	TRUE	ACH-000297
NCIH889_LUNG	RLF--MYCL	3	1529	RLF	1271	chr1:40627315:+	MYCL	20894	chr1:40363640:-	INCL_NON_REF_SPLICE	YES	16	360	0.99	0.81	0.0342	17.431	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH889_LUNG	0.81	0.99	17.4652	TRUE	0	0	0	10	0	TRUE	ACH-000297
NCIH889_LUNG	BAGE2--CTBP2P1	55	25	BAGE2	5645	chr21:11058161:-	CTBP2P1	23085	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	99	0	0.45	1	0.627	0.285	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	NCIH889_LUNG	0.45	1	0.912	TRUE	0	0	0	6	0	TRUE	ACH-000297
NCIH889_LUNG	CLTCL1--HIRA	43	24	CLTCL1	2325	chr22:19263146:-	HIRA	66917	chr22:19319079:-	ONLY_REF_SPLICE	YES	38	173	0.64	0.28	0.4902	0.2736	LOCAL_REARRANGEMENT:-:[38982],CLTCL1->Oncogene{Bushman},chr22:19166986-19279239:-,clathrin_heavy_chain_like_1,HIRA->chr22:19318221-19435224:-,histone_cell_cycle_regulator	NCIH889_LUNG	0.28	0.64	0.7638	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	AC027612.3--AP000345.1	21	5	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	9	0	0.74	1	0.2394	0.057	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH889_LUNG	0.74	1	0.2964	TRUE	0	0	0	11	0	TRUE	ACH-000297
NCIH889_LUNG	ZFP69B--RP5-864K19.4	18	11	ZFP69B	4568	chr1:40923111:+	RP5-864K19.4	13531	chr1:39379212:+	ONLY_REF_SPLICE	YES	38	10	0.43	0.74	0.2052	0.1254	ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+,RP5-864K19.4->chr1:39325672-39385068:+	NCIH889_LUNG	0.43	0.74	0.3306	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	CLTCL1--HIRA	12	19	CLTCL1	2309	chr22:19263162:-	HIRA	66917	chr22:19319079:-	INCL_NON_REF_SPLICE	YES	36	173	0.46	0.15	0.1368	0.2166	LOCAL_REARRANGEMENT:-:[38982],CLTCL1->Oncogene{Bushman},chr22:19166986-19279239:-,clathrin_heavy_chain_like_1,HIRA->chr22:19318221-19435224:-,histone_cell_cycle_regulator	NCIH889_LUNG	0.15	0.46	0.3534	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	BAGE2--CTBP2P1	5	24	BAGE2	5645	chr21:11058161:-	CTBP2P1	23091	chrY:59001446:+	INCL_NON_REF_SPLICE	YES	99	0	0.23	1	0.057	0.2736	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	NCIH889_LUNG	0.23	1	0.3306	TRUE	0	0	0	6	0	TRUE	ACH-000297
NCIH889_LUNG	ZC3H7B--L3MBTL2	7	9	ZC3H7B	6962	chr22:41728231:+	L3MBTL2	30662	chr22:41601204:+	INCL_NON_REF_SPLICE	YES	80	0	0.17	1	0.0798	0.1026	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:+:[70251],ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+	NCIH889_LUNG	0.17	1	0.1824	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	ZFP69B--RP5-864K19.4	8	3	ZFP69B	4568	chr1:40923111:+	RP5-864K19.4	14620	chr1:39384846:+	ONLY_REF_SPLICE	YES	38	14	0.22	0.44	0.0912	0.0342	ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+,RP5-864K19.4->chr1:39325672-39385068:+	NCIH889_LUNG	0.22	0.44	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	ZC3H7B--L3MBTL2	6	9	ZC3H7B	6962	chr22:41728231:+	L3MBTL2	30713	chr22:41601255:+	INCL_NON_REF_SPLICE	YES	80	0	0.16	1	0.0684	0.1026	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:+:[70251],ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+	NCIH889_LUNG	0.16	1	0.171	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	AC027612.3--AP000345.1	5	5	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0.057	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH889_LUNG	1	1	0.114	TRUE	0	0	0	11	0	TRUE	ACH-000297
NCIH889_LUNG	ZC3H7B--L3MBTL2	4	7	ZC3H7B	6962	chr22:41728231:+	L3MBTL2	33731	chr22:41605700:+	ONLY_REF_SPLICE	YES	80	8	0.12	0.58	0.0456	0.0798	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:+:[70251],ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+	NCIH889_LUNG	0.12	0.58	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	CLTCL1--HIRA	4	5	CLTCL1	1117	chr22:19279123:-	HIRA	66917	chr22:19319079:-	ONLY_REF_SPLICE	YES	37	173	0.2	0.05	0.0456	0.057	LOCAL_REARRANGEMENT:-:[38982],CLTCL1->Oncogene{Bushman},chr22:19166986-19279239:-,clathrin_heavy_chain_like_1,HIRA->chr22:19318221-19435224:-,histone_cell_cycle_regulator	NCIH889_LUNG	0.05	0.2	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	OTUD7A--RP11-64J4.2	4	1	OTUD7A	1283	chr15:32162710:-	RP11-64J4.2	28061	chr17:3182447:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0456	0.0114	OTUD7A->OTU_deubiquitinase_7A,chr15:31775329-32162992:-,RP11-64J4.2->chr17:3182069-3289633:-	NCIH889_LUNG	0.83	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	CPSF6--RAB3IP	3	0	CPSF6	1170	chr12:69633486:+	RAB3IP	22085	chr12:70149164:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	NCIH889_LUNG	1	1	0.0342	TRUE	0	0	0	3	0	TRUE	ACH-000297
NCIH889_LUNG	C6orf106--SQSTM1	2	0	C6orf106	6238	chr6:34574332:-	SQSTM1	26943	chr5:179260032:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PROTCLUST,C6orf106->chr6:34555065-34664636:-,chromosome_6_open_reading_frame_106,SQSTM1->chr5:179233388-179265078:+,sequestosome_1	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	DLX6-AS1--SHFM1	2	0	DLX6-AS1	1141	chr7:96643237:-	SHFM1	30560	chr7:96324203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	NCIH889_LUNG	1	1	0.0228	TRUE	0	2	0	4	2	TRUE	ACH-000297
NCIH889_LUNG	DTNA--NOL4	2	0	DTNA	1225	chr18:32073478:+	NOL4	75085	chr18:31432999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	GALNT7--ZNF124	2	0	GALNT7	1209	chr4:174090112:+	ZNF124	29807	chr1:247287173:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GALNT7->chr4:174089904-174245118:+,polypeptide_N-acetylgalactosaminyltransferase_7,ZNF124->chr1:247285277-247335318:-,zinc_finger_protein_124	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	MCM4--TM9SF2	2	0	MCM4	3222	chr8:48874966:+	TM9SF2	25158	chr13:100181721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4,TM9SF2->chr13:100153671-100216260:+,transmembrane_9_superfamily_member_2	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	POLR3K--LUC7L	2	0	POLR3K	2738	chr16:101558:-	LUC7L	14274	chr16:258187:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,LUC7L->LUC7_like,chr16:238968-279462:-	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	SF1--RACGAP1	2	0	SF1	3289	chr11:64543970:-	RACGAP1	24554	chr12:50400419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	VWDE--PHF14	2	0	VWDE	1283	chr7:12443285:-	PHF14	36948	chr7:11021999:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
OAW28_OVARY	PTPN11--TRPM8	433	110	PTPN11	1775	chr12:112856929:+	TRPM8	49615	chr2:234888832:+	ONLY_REF_SPLICE	YES	159	0	0.77	1	3.968	1.008	PTPN11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:112856155-112947717:+,protein_tyrosine_phosphatase,_non-receptor_type_11,TRPM8->chr2:234826043-234928166:+,transient_receptor_potential_cation_channel_subfamily_M_member_8	OAW28_OVARY	0.77	1	4.976	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	LAMA3--RBBP8	270	42	LAMA3	7188	chr18:21333776:+	RBBP8	99550	chr18:20562181:+	ONLY_REF_SPLICE	YES	25	17	0.93	0.95	2.4743	0.3849	{Klijn_CCL:Ovary=1},LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,RBBP8->Oncogene{Bushman},chr18:20378224-20606451:+,retinoblastoma_binding_protein_8	OAW28_OVARY	0.93	0.95	2.8592	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SMARCA4--C19orf38	266	52	SMARCA4	1253	chr19:11071850:+	C19orf38	47936	chr19:10959117:+	ONLY_REF_SPLICE	YES	33	0	0.91	1	2.4376	0.4765	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	OAW28_OVARY	0.91	1	2.9141	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	218	59	PPFIBP1	4200	chr12:27731172:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	444	2	0.38	0.99	1.9977	0.5407	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.38	0.99	2.5384	TRUE	0	1	0	5	1	TRUE	ACH-000116
OAW28_OVARY	PPP2R2A--SNX14	202	35	PPP2R2A	3250	chr8:26151256:+	SNX14	29108	chr6:86284096:-	ONLY_REF_SPLICE	YES	32	151	0.88	0.61	1.8511	0.3207	PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha,SNX14->chr6:86215214-86303874:-,sorting_nexin_14	OAW28_OVARY	0.61	0.88	2.1718	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MXRA8--SMUG1	157	24	MXRA8	6481	chr1:1289228:-	SMUG1	16438	chr12:54575431:-	ONLY_REF_SPLICE	YES	710	61	0.2	0.75	1.4387	0.2199	MXRA8->chr1:1288069-1297157:-,matrix-remodelling_associated_8,SMUG1->chr12:54558529-54582778:-,single-strand-selective_monofunctional_uracil-DNA_glycosylase_1	OAW28_OVARY	0.2	0.75	1.6586	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	150	26	RWDD1	1289	chr6:116892818:+	FAM26D	18718	chr6:116864928:+	ONLY_REF_SPLICE	YES	111	1	0.61	0.99	1.3746	0.2383	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.61	0.99	1.6129	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	128	71	PPFIBP1	7725	chr12:27786393:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	557	2	0.26	0.99	1.173	0.6506	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.26	0.99	1.8236	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	BCAR3--ALG14	115	34	BCAR3	8673	chr1:94140170:-	ALG14	33744	chr1:95492816:-	ONLY_REF_SPLICE	YES	24	41	0.86	0.78	1.0539	0.3116	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	OAW28_OVARY	0.78	0.86	1.3655	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	93	42	RWDD1	3733	chr6:116895334:+	FAM26D	18718	chr6:116864928:+	ONLY_REF_SPLICE	YES	120	1	0.53	0.99	0.8522	0.3849	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.53	0.99	1.2371	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RAPGEF6--BCL2L1	96	21	RAPGEF6	4487	chr5:130928076:-	BCL2L1	50991	chr20:30253889:-	ONLY_REF_SPLICE	YES	3	446	0.97	0.21	0.8797	0.1924	RAPGEF6->Rap_guanine_nucleotide_exchange_factor_6,chr5:130759614-130970929:-,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	OAW28_OVARY	0.21	0.97	1.0721	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	44	25	PPFIBP1	1935	chr12:27677298:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	429	2	0.14	0.97	0.4032	0.2291	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.14	0.97	0.6323	TRUE	0	2	0	3	1	TRUE	ACH-000116
OAW28_OVARY	MAP4--CBFA2T3	39	9	MAP4	3829	chr3:48040128:-	CBFA2T3	45193	chr16:88968064:-	ONLY_REF_SPLICE	YES	192	0	0.2	1	0.3574	0.0825	{Klijn_CCL:Ovary=1},MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-	OAW28_OVARY	0.2	1	0.4399	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CDK5RAP2--C5	37	8	CDK5RAP2	33807	chr9:123182066:-	C5	80659	chr9:123742532:-	ONLY_REF_SPLICE	YES	120	7	0.27	0.87	0.3391	0.0733	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,C5->chr9:123714616-123812554:-,complement_component_5	OAW28_OVARY	0.27	0.87	0.4124	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SYT14--DIEXF	37	2	SYT14	2133	chr1:210126101:+	DIEXF	32331	chr1:210024549:+	ONLY_REF_SPLICE	YES	2	11	0.95	0.78	0.3391	0.0183	LOCAL_REARRANGEMENT:+:[80628],SYT14->chr1:210111538-210337636:+,synaptotagmin_14,DIEXF->chr1:210001352-210030910:+,digestive_organ_expansion_factor_homolog_(zebrafish)	OAW28_OVARY	0.78	0.95	0.3574	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	EBF4--TMEM50B	32	8	EBF4	5736	chr20:2690288:+	TMEM50B	24804	chr21:34828404:-	ONLY_REF_SPLICE	YES	0	53	1	0.43	0.2932	0.0733	EBF4->chr20:2673524-2740753:+,early_B-cell_factor_4,TMEM50B->chr21:34804792-34852318:-,transmembrane_protein_50B	OAW28_OVARY	0.43	1	0.3665	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	GPR113--OTOF	33	0	GPR113	2107	chr2:26568579:-	OTOF	41920	chr2:26694018:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3024	0	GPR113->chr2:26531041-26569685:-,OTOF->Oncogene{Bushman},chr2:26680071-26781566:-,otoferlin	OAW28_OVARY	1	1	0.3024	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SMARCA4--C19orf38	26	26	SMARCA4	1253	chr19:11071850:+	C19orf38	49035	chr19:10960935:+	ONLY_REF_SPLICE	YES	33	15	0.61	0.78	0.2383	0.2383	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	OAW28_OVARY	0.61	0.78	0.4766	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	ARHGAP26--KM-PA-2	31	4	ARHGAP26	18023	chr5:142311690:+	KM-PA-2	49181	chr8:145319974:-	ONLY_REF_SPLICE	YES	5	0	0.88	1	0.2841	0.0367	ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,KM-PA-2->chr8:145317003-145331153:-	OAW28_OVARY	0.88	1	0.3208	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	TTC27--BIRC6	31	3	TTC27	3657	chr2:32859072:+	BIRC6	106693	chr2:32828073:+	ONLY_REF_SPLICE	YES	15	24	0.69	0.59	0.2841	0.0275	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[9133],TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27,BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+	OAW28_OVARY	0.59	0.69	0.3116	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SNX14--PPP2R2A	28	7	SNX14	12668	chr6:86267694:-	PPP2R2A	41074	chr8:26196406:+	ONLY_REF_SPLICE	YES	106	26	0.25	0.57	0.2566	0.0641	{Klijn_CCL:Ovary=1},SNX14->chr6:86215214-86303874:-,sorting_nexin_14,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	OAW28_OVARY	0.25	0.57	0.3207	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	WDR90--RAB40C	26	14	WDR90	10034	chr16:708344:+	RAB40C	31476	chr16:678818:+	INCL_NON_REF_SPLICE	YES	26	51	0.61	0.44	0.2383	0.1283	LOCAL_REARRANGEMENT:+:[20039],WDR90->WD_repeat_domain_90,chr16:699311-717833:+,RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+	OAW28_OVARY	0.44	0.61	0.3666	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	6	72	PPFIBP1	7725	chr12:27786393:+	SMCO2	43061	chr12:27623610:+	INCL_NON_REF_SPLICE	YES	557	0	0.12	1	0.055	0.6598	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.12	1	0.7148	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RAPGEF3--NFE2	22	5	RAPGEF3	3397	chr12:48151649:-	NFE2	28854	chr12:54689088:-	ONLY_REF_SPLICE	YES	11	7	0.71	0.79	0.2016	0.0458	RAPGEF3->Rap_guanine_nucleotide_exchange_factor_3,chr12:48128455-48164823:-,NFE2->chr12:54685895-54694905:-,nuclear_factor,_erythroid_2	OAW28_OVARY	0.71	0.79	0.2474	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SMARCA4--C19orf38	8	57	SMARCA4	1808	chr19:11072405:+	C19orf38	47936	chr19:10959117:+	ONLY_REF_SPLICE	YES	55	0	0.54	1	0.0733	0.5223	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	OAW28_OVARY	0.54	1	0.5956	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	3	73	PPFIBP1	7725	chr12:27786393:+	SMCO2	43006	chr12:27623555:+	ONLY_REF_SPLICE	NO	557	0	0.12	1	0.0275	0.669	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.12	1	0.6965	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MGAT3--TAB1	21	0	MGAT3	1214	chr22:39853562:+	TAB1	14829	chr22:39811011:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1924	0	LOCAL_REARRANGEMENT:+:[20284],MGAT3->chr22:39853349-39888199:+,mannosyl_(beta-1,4-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,TAB1->TGF-beta_activated_kinase_1/MAP3K7_binding_protein_1,chr22:39795746-39833065:+	OAW28_OVARY	1	1	0.1924	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CASC3--THRA	20	2	CASC3	2290	chr17:38297860:+	THRA	27033	chr17:38244495:+	ONLY_REF_SPLICE	YES	39	64	0.36	0.26	0.1833	0.0183	LOCAL_REARRANGEMENT:+:[46451],CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+,THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha	OAW28_OVARY	0.26	0.36	0.2016	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	DNAH14--CAPN2	17	12	DNAH14	3523	chr1:225117537:+	CAPN2	112997	chr1:223931802:+	ONLY_REF_SPLICE	YES	36	89	0.45	0.25	0.1558	0.11	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,CAPN2->calpain_2,chr1:223889295-223963720:+	OAW28_OVARY	0.25	0.45	0.2658	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	GMCL1--ANXA4	16	5	GMCL1	1511	chr2:70057284:+	ANXA4	27484	chr2:70008652:+	ONLY_REF_SPLICE	YES	24	20	0.47	0.51	0.1466	0.0458	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[3178],GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,ANXA4->annexin_A4,chr2:69871557-70053596:+	OAW28_OVARY	0.47	0.51	0.1924	TRUE	0	2	0	2	2	TRUE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	2	61	PPFIBP1	4200	chr12:27731172:+	SMCO2	43006	chr12:27623555:+	ONLY_REF_SPLICE	YES	444	0	0.12	1	0.0183	0.559	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.12	1	0.5773	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PRIM2--TRPC4AP	16	4	PRIM2	6397	chr6:57190843:+	TRPC4AP	27788	chr20:33657215:-	ONLY_REF_SPLICE	YES	41	76	0.33	0.21	0.1466	0.0367	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein	OAW28_OVARY	0.21	0.33	0.1833	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	AMOTL1--RP11-867G2.2	15	4	AMOTL1	7644	chr11:94533477:+	RP11-867G2.2	32234	chr11:94261250:+	ONLY_REF_SPLICE	YES	48	0	0.28	1	0.1375	0.0367	AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+,RP11-867G2.2->chr11:94245747-94265289:+	OAW28_OVARY	0.28	1	0.1742	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SMARCA4--C19orf38	3	51	SMARCA4	1250	chr19:11071847:+	C19orf38	47924	chr19:10959105:+	INCL_NON_REF_SPLICE	YES	23	0	0.7	1	0.0275	0.4674	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	OAW28_OVARY	0.7	1	0.4949	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CTD-3006G17.2--GTPBP10	14	4	CTD-3006G17.2	4550	chr14:28125649:-	GTPBP10	14621	chr7:89967477:+	INCL_NON_REF_SPLICE	YES	9	0	0.67	1	0.1283	0.0367	CTD-3006G17.2->chr14:27727923-28314492:-,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	OAW28_OVARY	0.67	1	0.165	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	NDOR1--NELFA	13	3	NDOR1	2713	chr9:140107051:+	NELFA	14493	chr4:2010686:-	INCL_NON_REF_SPLICE	YES	32	1	0.33	0.94	0.1191	0.0275	NDOR1->NADPH_dependent_diflavin_oxidoreductase_1,chr9:140100147-140111461:+,NELFA->chr4:1984441-2043630:-,negative_elongation_factor_complex_member_A	OAW28_OVARY	0.33	0.94	0.1466	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	AMOTL1--RP11-867G2.2	11	4	AMOTL1	7644	chr11:94533477:+	RP11-867G2.2	33360	chr11:94265062:+	ONLY_REF_SPLICE	YES	48	0	0.24	1	0.1008	0.0367	AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+,RP11-867G2.2->chr11:94245747-94265289:+	OAW28_OVARY	0.24	1	0.1375	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	NR2F1--CAST	11	1	NR2F1	5494	chr5:92924150:+	CAST	18381	chr5:96011243:+	ONLY_REF_SPLICE	YES	8	29	0.6	0.29	0.1008	0.0092	NR2F1->Oncogene{Bushman},chr5:92919043-92930321:+,nuclear_receptor_subfamily_2_group_F_member_1,CAST->calpastatin,chr5:95860971-96115299:+	OAW28_OVARY	0.29	0.6	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SHOC2--RBM20	11	1	SHOC2	5864	chr10:112745523:+	RBM20	18355	chr10:112540559:+	ONLY_REF_SPLICE	YES	34	0	0.26	1	0.1008	0.0092	LOCAL_REARRANGEMENT:+:[80074],SHOC2->SHOC2_leucine-rich_repeat_scaffold_protein,chr10:112679301-112773425:+,RBM20->RNA_binding_motif_protein_20,chr10:112404155-112599227:+	OAW28_OVARY	0.26	1	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	GMCL1--ANXA4	10	3	GMCL1	1511	chr2:70057284:+	ANXA4	30750	chr2:70031665:+	ONLY_REF_SPLICE	YES	24	160	0.35	0.08	0.0916	0.0275	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[3178],GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,ANXA4->annexin_A4,chr2:69871557-70053596:+	OAW28_OVARY	0.08	0.35	0.1191	TRUE	0	2	0	2	2	TRUE	ACH-000116
OAW28_OVARY	MBD2--STARD6	10	1	MBD2	1771	chr18:51750388:-	STARD6	22841	chr18:51858229:-	ONLY_REF_SPLICE	YES	89	0	0.11	1	0.0916	0.0092	LOCAL_REARRANGEMENT:-:[99570],MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2,STARD6->StAR_related_lipid_transfer_domain_containing_6,chr18:51850728-51884334:-	OAW28_OVARY	0.11	1	0.1008	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	3	27	PPFIBP1	1935	chr12:27677298:+	SMCO2	43006	chr12:27623555:+	ONLY_REF_SPLICE	YES	429	0	0.07	1	0.0275	0.2474	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.07	1	0.2749	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	7	8	RWDD1	1289	chr6:116892818:+	FAM26D	20361	chr6:116875448:+	ONLY_REF_SPLICE	YES	111	13	0.12	0.54	0.0641	0.0733	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.12	0.54	0.1374	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PWWP2B--LRRC27	8	1	PWWP2B	3848	chr10:134219793:+	LRRC27	10019	chr10:134146981:+	ONLY_REF_SPLICE	YES	66	3	0.12	0.75	0.0733	0.0092	LOCAL_REARRANGEMENT:+:[15662],PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	OAW28_OVARY	0.12	0.75	0.0825	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SMARCA4--C19orf38	1	29	SMARCA4	1808	chr19:11072405:+	C19orf38	49035	chr19:10960935:+	ONLY_REF_SPLICE	YES	55	15	0.35	0.67	0.0092	0.2658	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	OAW28_OVARY	0.35	0.67	0.275	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	6	8	RWDD1	1289	chr6:116892818:+	FAM26D	21428	chr6:116878988:+	ONLY_REF_SPLICE	YES	111	26	0.11	0.35	0.055	0.0733	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.11	0.35	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	1	28	RWDD1	2619	chr6:116894148:+	FAM26D	18718	chr6:116864928:+	ONLY_REF_SPLICE	NO	108	1	0.21	0.97	0.0092	0.2566	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.21	0.97	0.2658	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PTPN11--TRPM8	7	2	PTPN11	1252	chr12:112856406:+	TRPM8	49615	chr2:234888832:+	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0641	0.0183	PTPN11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:112856155-112947717:+,protein_tyrosine_phosphatase,_non-receptor_type_11,TRPM8->chr2:234826043-234928166:+,transient_receptor_potential_cation_channel_subfamily_M_member_8	OAW28_OVARY	0.82	1	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	1	26	RWDD1	2112	chr6:116893641:+	FAM26D	18718	chr6:116864928:+	ONLY_REF_SPLICE	YES	117	1	0.19	0.96	0.0092	0.2383	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.19	0.96	0.2475	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SPRTN--DISC1	7	2	SPRTN	6299	chr1:231483671:+	DISC1	17702	chr1:231829572:+	ONLY_REF_SPLICE	YES	41	0	0.18	1	0.0641	0.0183	SPRTN->SprT-like_N-terminal_domain,chr1:231472850-231490769:+,DISC1->chr1:231762561-232177018:+,disrupted_in_schizophrenia_1	OAW28_OVARY	0.18	1	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	WDR90--RAB40C	4	14	WDR90	10040	chr16:708350:+	RAB40C	31035	chr16:678377:+	INCL_NON_REF_SPLICE	YES	30	51	0.38	0.26	0.0367	0.1283	LOCAL_REARRANGEMENT:+:[20039],WDR90->WD_repeat_domain_90,chr16:699311-717833:+,RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+	OAW28_OVARY	0.26	0.38	0.165	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SMARCA4--C19orf38	7	1	SMARCA4	1253	chr19:11071850:+	C19orf38	50344	chr19:10966941:+	ONLY_REF_SPLICE	YES	33	81	0.2	0.09	0.0641	0.0092	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	OAW28_OVARY	0.09	0.2	0.0733	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	GNAQ--CARM1P1	6	3	GNAQ	1359	chr9:80646016:-	CARM1P1	24148	chr9:2948282:-	ONLY_REF_SPLICE	YES	77	0	0.1	1	0.055	0.0275	GNAQ->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_q,Oncogene{Bushman},OncomapV4_panel,chr9:80331003-80646374:-,CARM1P1->chr9:2907073-3053408:-,coactivator_associated_arginine_methyltransferase_1_pseudogene_1	OAW28_OVARY	0.1	1	0.0825	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MEGF9--STOM	6	1	MEGF9	6190	chr9:123384894:-	STOM	20795	chr9:124116951:-	ONLY_REF_SPLICE	YES	26	157	0.21	0.04	0.055	0.0092	MEGF9->chr9:123363091-123476748:-,multiple_EGF_like_domains_9,STOM->chr9:124101355-124132531:-,stomatin	OAW28_OVARY	0.04	0.21	0.0642	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PPAP2A--USP25	6	0	PPAP2A	7358	chr5:54737679:-	USP25	13959	chr21:17135210:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.055	0	PPAP2A->chr5:54720682-54830878:-,USP25->chr21:17102344-17252377:+,ubiquitin_specific_peptidase_25	OAW28_OVARY	1	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	NRL--GZMB	5	2	NRL	1293	chr14:24583931:-	GZMB	11752	chr14:25103427:-	INCL_NON_REF_SPLICE	YES	6	0	0.54	1	0.0458	0.0183	NRL->chr14:24549316-24584223:-,neural_retina_leucine_zipper,GZMB->chr14:25100160-25103473:-,granzyme_B	OAW28_OVARY	0.54	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RP1-310O13.7--XKR7	5	2	RP1-310O13.7	2838	chr20:30616731:-	XKR7	8772	chr20:30582871:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0458	0.0183	LOCAL_INVERSION:-:+:[24366],RP1-310O13.7->chr20:30615556-30619378:-,XKR7->XK_related_7,chr20:30555805-30591190:+	OAW28_OVARY	0.78	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CTD-3006G17.2--GTPBP10	4	5	CTD-3006G17.2	4655	chr14:28125544:-	GTPBP10	14621	chr7:89967477:+	INCL_NON_REF_SPLICE	YES	9	0	0.5	1	0.0367	0.0458	CTD-3006G17.2->chr14:27727923-28314492:-,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	OAW28_OVARY	0.5	1	0.0825	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	XPR1--RP11-522D2.1	5	0	XPR1	1267	chr1:180601406:+	RP11-522D2.1	27467	chr1:180531340:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:+:[65486],XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,RP11-522D2.1->chr1:180528112-180535654:+	OAW28_OVARY	1	1	0.0458	TRUE	0	13	0	1	13	TRUE	ACH-000116
OAW28_OVARY	C1orf186--SPATA5	4	3	C1orf186	8233	chr1:206241533:-	SPATA5	29675	chr4:124177171:+	ONLY_REF_SPLICE	YES	6	1	0.54	0.88	0.0367	0.0275	C1orf186->chr1:206238872-206288647:-,chromosome_1_open_reading_frame_186,SPATA5->chr4:123844229-124240605:+,spermatogenesis_associated_5	OAW28_OVARY	0.54	0.88	0.0642	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PLA2R1--LST3	4	2	PLA2R1	17695	chr2:160833196:-	LST3	56188	chr12:21196268:+	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0367	0.0183	PLA2R1->chr2:160788519-160919121:-,phospholipase_A2_receptor_1,LST3->chr12:20968608-21243179:+	OAW28_OVARY	0.55	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	1	14	RWDD1	3733	chr6:116895334:+	FAM26D	20361	chr6:116875448:+	ONLY_REF_SPLICE	YES	120	13	0.11	0.54	0.0092	0.1283	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.11	0.54	0.1375	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SPRTN--DISC1	4	2	SPRTN	3765	chr1:231475614:+	DISC1	17702	chr1:231829572:+	ONLY_REF_SPLICE	YES	32	0	0.16	1	0.0367	0.0183	SPRTN->SprT-like_N-terminal_domain,chr1:231472850-231490769:+,DISC1->chr1:231762561-232177018:+,disrupted_in_schizophrenia_1	OAW28_OVARY	0.16	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	NEDD9--CYTH4	4	1	NEDD9	1210	chr6:11382372:-	CYTH4	31904	chr22:37688662:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0367	0.0092	NEDD9->chr6:11183531-11382581:-,neural_precursor_cell_expressed,_developmentally_down-regulated_9,CYTH4->chr22:37678068-37711382:+,cytohesin_4	OAW28_OVARY	0.62	1	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PWWP2B--LRRC27	4	1	PWWP2B	3848	chr10:134219793:+	LRRC27	13212	chr10:134151069:+	ONLY_REF_SPLICE	YES	66	9	0.07	0.36	0.0367	0.0092	LOCAL_REARRANGEMENT:+:[15662],PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	OAW28_OVARY	0.07	0.36	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	1	12	RWDD1	3733	chr6:116895334:+	FAM26D	21428	chr6:116878988:+	ONLY_REF_SPLICE	YES	120	26	0.1	0.33	0.0092	0.11	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.1	0.33	0.1192	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SYT1--NAV3	4	0	SYT1	11895	chr12:79441142:+	NAV3	46395	chr12:78510552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	SYT1->chr12:79257773-79845788:+,synaptotagmin_1,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	OAW28_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	BCAR3--ALG14	1	11	BCAR3	8673	chr1:94140170:-	ALG14	35203	chr1:95448862:-	ONLY_REF_SPLICE	YES	24	66	0.33	0.15	0.0092	0.1008	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	OAW28_OVARY	0.15	0.33	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SYT14--DIEXF	3	2	SYT14	2636	chr1:210126604:+	DIEXF	32331	chr1:210024549:+	ONLY_REF_SPLICE	YES	2	11	0.71	0.31	0.0275	0.0183	LOCAL_REARRANGEMENT:+:[80628],SYT14->chr1:210111538-210337636:+,synaptotagmin_14,DIEXF->chr1:210001352-210030910:+,digestive_organ_expansion_factor_homolog_(zebrafish)	OAW28_OVARY	0.31	0.71	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	ADD1--FAM193A	3	1	ADD1	26487	chr4:2927839:+	FAM193A	41823	chr4:2661539:+	ONLY_REF_SPLICE	YES	103	7	0.04	0.36	0.0275	0.0092	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[LUSC:1|OV:1],ADD1->adducin_1,chr4:2845584-2931803:+,FAM193A->chr4:2626988-2734292:+,family_with_sequence_similarity_193_member_A	OAW28_OVARY	0.04	0.36	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CPSF6--PGBD2	3	1	CPSF6	11046	chr12:69656342:+	PGBD2	23586	chr1:249211478:+	ONLY_REF_SPLICE	YES	134	14	0.03	0.22	0.0275	0.0092	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	OAW28_OVARY	0.03	0.22	0.0367	TRUE	0	7	0	6	2	TRUE	ACH-000116
OAW28_OVARY	MAP4--CBFA2T3	1	9	MAP4	4883	chr3:48028873:-	CBFA2T3	45193	chr16:88968064:-	ONLY_REF_SPLICE	NO	221	0	0.04	1	0.0092	0.0825	{Klijn_CCL:Ovary=1},MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-	OAW28_OVARY	0.04	1	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CPSF6--CREBZF	3	0	CPSF6	11046	chr12:69656342:+	CREBZF	25591	chr11:85371641:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	GTEx_v2:{count=3;pct=0.03%;dist=Breast_-_Mammary_Tissue=1,Cells_-_EBV-transformed_lymphocytes=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CREBZF->CREB/ATF_bZIP_transcription_factor,chr11:85370752-85393951:-	OAW28_OVARY	1	1	0.0275	TRUE	0	1	1	1	0	TRUE	ACH-000116
OAW28_OVARY	FAM53A--LETM1	3	0	FAM53A	5655	chr4:1656705:-	LETM1	29741	chr4:1821199:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	FAM53A->chr4:1619642-1686029:-,family_with_sequence_similarity_53_member_A,LETM1->chr4:1813206-1857974:-,leucine_zipper_and_EF-hand_containing_transmembrane_protein_1	OAW28_OVARY	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SNX14--PPP2R2A	1	7	SNX14	12668	chr6:86267694:-	PPP2R2A	39989	chr8:26191002:+	ONLY_REF_SPLICE	YES	106	34	0.07	0.19	0.0092	0.0641	{Klijn_CCL:Ovary=1},SNX14->chr6:86215214-86303874:-,sorting_nexin_14,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	OAW28_OVARY	0.07	0.19	0.0733	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	EBF4--TMEM50B	2	2	EBF4	5736	chr20:2690288:+	TMEM50B	25117	chr21:34828091:-	ONLY_REF_SPLICE	YES	0	43	1	0.09	0.0183	0.0183	EBF4->chr20:2673524-2740753:+,early_B-cell_factor_4,TMEM50B->chr21:34804792-34852318:-,transmembrane_protein_50B	OAW28_OVARY	0.09	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PLA2R1--LST3	2	1	PLA2R1	17096	chr2:160833795:-	LST3	56188	chr12:21196268:+	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0183	0.0092	PLA2R1->chr2:160788519-160919121:-,phospholipase_A2_receptor_1,LST3->chr12:20968608-21243179:+	OAW28_OVARY	0.25	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PWWP2B--LRRC27	2	1	PWWP2B	3545	chr10:134219490:+	LRRC27	10019	chr10:134146981:+	ONLY_REF_SPLICE	YES	56	3	0.05	0.5	0.0183	0.0092	LOCAL_REARRANGEMENT:+:[15662],PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	OAW28_OVARY	0.05	0.5	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	ADD1--FAM193A	2	0	ADD1	25388	chr4:2916767:+	FAM193A	43066	chr4:2664565:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[LUSC:1|OV:1],ADD1->adducin_1,chr4:2845584-2931803:+,FAM193A->chr4:2626988-2734292:+,family_with_sequence_similarity_193_member_A	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	BRD8--KDM3B	2	0	BRD8	10847	chr5:137501517:-	KDM3B	52313	chr5:137762664:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	BRD8->bromodomain_containing_8,chr5:137475455-137514675:-,KDM3B->chr5:137688285-137772717:+,lysine_demethylase_3B	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CALU--FAM71F1	2	0	CALU	6021	chr7:128399091:+	FAM71F1	24459	chr7:128369956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	LOCAL_REARRANGEMENT:+:[7549],CALU->calumenin,chr7:128379346-128411861:+,FAM71F1->chr7:128349115-128371797:+,family_with_sequence_similarity_71_member_F1	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CBFA2T2--LINC00703	2	0	CBFA2T2	1227	chr20:32078107:+	LINC00703	31649	chr10:4450647:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	CBFA2T2->CBFA2/RUNX1_translocation_partner_2,chr20:32077881-32237842:+,LINC00703->chr10:4426438-4452804:+,long_intergenic_non-protein_coding_RNA_703	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CELF5--RP11-29G8.3	2	0	CELF5	1916	chr19:3225616:+	RP11-29G8.3	22765	chr13:76134889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	CELF5->CUGBP,_Elav-like_family_member_5,chr19:3224701-3297074:+,RP11-29G8.3->chr13:76123909-76381256:+	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CTD-3006G17.2--GTPBP10	1	4	CTD-3006G17.2	4550	chr14:28125649:-	GTPBP10	14624	chr7:89967480:+	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0092	0.0367	CTD-3006G17.2->chr14:27727923-28314492:-,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	OAW28_OVARY	0.36	1	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	25183	chr13:114174931:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	OAW28_OVARY	1	1	0.0183	TRUE	0	3	0	1	2	TRUE	ACH-000116
OAW28_OVARY	KIAA0319L--COL8A2	2	0	KIAA0319L	4118	chr1:36019951:-	COL8A2	35013	chr1:36581353:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,COL8A2->chr1:36560837-36590821:-,collagen_type_VIII_alpha_2	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	NARS2--TENM4	2	0	NARS2	10894	chr11:78189484:-	TENM4	49334	chr11:78498128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[77957],NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PARL--SH3PXD2A	2	0	PARL	1212	chr3:183602510:-	SH3PXD2A	25278	chr10:105420872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	PARL->chr3:183547173-183602721:-,presenilin_associated_rhomboid_like,SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PIK3CB--RP11-548O1.3	2	0	PIK3CB	1244	chr3:138553537:-	RP11-548O1.3	35039	chr3:138661460:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	PIK3CB->ArcherDX_panel,FoundationOne_panel,chr3:138372860-138553780:-,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_beta,RP11-548O1.3->chr3:138654031-138662862:-	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RAB30-AS1--EED	2	0	RAB30-AS1	1637	chr11:82783744:+	EED	15829	chr11:85968557:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	RAB30-AS1->RAB30_antisense_RNA_1_(head_to_head),chr11:82783108-82817761:+,EED->chr11:85955586-85989855:+,embryonic_ectoderm_development	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RP11-389K14.3--DIRAS2	2	0	RP11-389K14.3	3845	chr9:93145802:-	DIRAS2	9951	chr9:93376145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	RP11-389K14.3->chr9:93063184-93195787:-,DIRAS2->DIRAS_family_GTP_binding_RAS_like_2,chr9:93372114-93405386:-	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SCP2--MAP7	2	0	SCP2	13329	chr1:53453808:+	MAP7	32674	chr6:136742937:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	SCP2->chr1:53392901-53517375:+,sterol_carrier_protein_2,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SNX14--PPP2R2A	1	4	SNX14	10457	chr6:86275050:-	PPP2R2A	41074	chr8:26196406:+	ONLY_REF_SPLICE	NO	101	26	0.05	0.16	0.0092	0.0367	{Klijn_CCL:Ovary=1},SNX14->chr6:86215214-86303874:-,sorting_nexin_14,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	OAW28_OVARY	0.05	0.16	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	C1orf186--SPATA5	1	1	C1orf186	1543	chr1:206288105:-	SPATA5	29675	chr4:124177171:+	ONLY_REF_SPLICE	NO	33	1	0.06	0.67	0.0092	0.0092	C1orf186->chr1:206238872-206288647:-,chromosome_1_open_reading_frame_186,SPATA5->chr4:123844229-124240605:+,spermatogenesis_associated_5	OAW28_OVARY	0.06	0.67	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CTD-3006G17.2--GTPBP10	1	1	CTD-3006G17.2	4655	chr14:28125544:-	GTPBP10	21600	chr7:89982130:+	ONLY_REF_SPLICE	YES	9	3	0.18	0.4	0.0092	0.0092	CTD-3006G17.2->chr14:27727923-28314492:-,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	OAW28_OVARY	0.18	0.4	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	NAALADL2--KCNMB2	1	1	NAALADL2	13894	chr3:174577240:+	KCNMB2	48317	chr3:178525131:+	ONLY_REF_SPLICE	YES	18	0	0.1	1	0.0092	0.0092	NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	OAW28_OVARY	0.1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SPRTN--DISC1	1	1	SPRTN	2501	chr1:231474350:+	DISC1	17702	chr1:231829572:+	ONLY_REF_SPLICE	NO	20	0	0.09	1	0.0092	0.0092	SPRTN->SprT-like_N-terminal_domain,chr1:231472850-231490769:+,DISC1->chr1:231762561-232177018:+,disrupted_in_schizophrenia_1	OAW28_OVARY	0.09	1	0.0184	TRUE	0	0	0	2	0	TRUE	ACH-000116
HCT116_LARGE_INTESTINE	COMMD10--AP3S1	221	221	COMMD10	4974	chr5:115428397:+	AP3S1	24067	chr5:115230784:+	ONLY_REF_SPLICE	YES	144	2038	0.75	0.18	2.6342	2.6342	GTEx&tcga_normals:14/3694=0.38%,GTEx:0.30%,GTEx_FI:{Heart=[count:3=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Adrenal_Gland=[count:1=pct:1.2],Ovary=[count:1=pct:1.9],Uterus=[count:1=pct:2.3],Muscle=[count:1=pct:0.4],Blood=[count:1=pct:0.6]},GTEx_v2:{count=23;pct=0.27%;dist=Muscle_-_Skeletal=3,Heart_-_Left_Ventricle=3,Stomach=1,Artery_-_Tibial=1,Ovary=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Thyroid=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,Esophagus_-_Muscularis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},YOSHIHARA_TCGA_num_samples[BLCA:1|LGG:1],{Klijn_CCL:Colo-Rectal=1,Breast=1},COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	HCT116_LARGE_INTESTINE	0.18	0.75	5.2684	TRUE	1	3	0	1	3	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	COMMD10--AP3S1	1	221	COMMD10	6085	chr5:115469875:+	AP3S1	24067	chr5:115230784:+	ONLY_REF_SPLICE	YES	172	2038	0.56	0.1	0.0119	2.6342	GTEx&tcga_normals:14/3694=0.38%,GTEx:0.30%,GTEx_FI:{Heart=[count:3=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Adrenal_Gland=[count:1=pct:1.2],Ovary=[count:1=pct:1.9],Uterus=[count:1=pct:2.3],Muscle=[count:1=pct:0.4],Blood=[count:1=pct:0.6]},GTEx_v2:{count=23;pct=0.27%;dist=Muscle_-_Skeletal=3,Heart_-_Left_Ventricle=3,Stomach=1,Artery_-_Tibial=1,Ovary=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Thyroid=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,Esophagus_-_Muscularis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},YOSHIHARA_TCGA_num_samples[BLCA:1|LGG:1],{Klijn_CCL:Colo-Rectal=1,Breast=1},COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	HCT116_LARGE_INTESTINE	0.1	0.56	2.6461	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	PANK2--MAVS	48	15	PANK2	1890	chr20:3870375:+	MAVS	18503	chr20:3835205:+	ONLY_REF_SPLICE	YES	10	0	0.86	1	0.5721	0.1788	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[20206],PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2,MAVS->chr20:3827487-3849280:+,mitochondrial_antiviral_signaling_protein	HCT116_LARGE_INTESTINE	0.86	1	0.7509	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	COMMD10--AP3S1	4	112	COMMD10	4974	chr5:115428397:+	AP3S1	26284	chr5:115238582:+	ONLY_REF_SPLICE	YES	144	1896	0.45	0.06	0.0477	1.335	GTEx&tcga_normals:14/3694=0.38%,GTEx:0.30%,GTEx_FI:{Heart=[count:3=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Adrenal_Gland=[count:1=pct:1.2],Ovary=[count:1=pct:1.9],Uterus=[count:1=pct:2.3],Muscle=[count:1=pct:0.4],Blood=[count:1=pct:0.6]},GTEx_v2:{count=23;pct=0.27%;dist=Muscle_-_Skeletal=3,Heart_-_Left_Ventricle=3,Stomach=1,Artery_-_Tibial=1,Ovary=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Thyroid=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,Esophagus_-_Muscularis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},YOSHIHARA_TCGA_num_samples[BLCA:1|LGG:1],{Klijn_CCL:Colo-Rectal=1,Breast=1},COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	HCT116_LARGE_INTESTINE	0.06	0.45	1.3827	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	TCF7L2--RP11-57H14.3	20	21	TCF7L2	4529	chr10:114799885:+	RP11-57H14.3	23331	chr10:114648494:+	ONLY_REF_SPLICE	YES	311	0	0.12	1	0.2384	0.2503	LOCAL_REARRANGEMENT:+:[44139],TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2,RP11-57H14.3->chr10:114648494-114665870:+	HCT116_LARGE_INTESTINE	0.12	1	0.4887	TRUE	0	2	0	1	2	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	SPAG9--MBTD1	16	9	SPAG9	1512	chr17:49197715:-	MBTD1	59068	chr17:49279057:-	ONLY_REF_SPLICE	YES	79	61	0.24	0.29	0.1907	0.1073	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[56560],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HCT116_LARGE_INTESTINE	0.24	0.29	0.298	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	LINC00511--SLC39A11	13	18	LINC00511	8867	chr17:70588342:-	SLC39A11	52513	chr17:70645407:-	ONLY_REF_SPLICE	YES	84	107	0.27	0.22	0.155	0.2146	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	HCT116_LARGE_INTESTINE	0.22	0.27	0.3696	TRUE	0	1	0	5	1	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	PANK2--MAVS	7	22	PANK2	3062	chr20:3872058:+	MAVS	18503	chr20:3835205:+	ONLY_REF_SPLICE	YES	25	0	0.54	1	0.0834	0.2622	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[20206],PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2,MAVS->chr20:3827487-3849280:+,mitochondrial_antiviral_signaling_protein	HCT116_LARGE_INTESTINE	0.54	1	0.3456	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	TCF7L2--RP11-57H14.3	3	24	TCF7L2	5673	chr10:114849299:+	RP11-57H14.3	23331	chr10:114648494:+	ONLY_REF_SPLICE	YES	318	0	0.08	1	0.0358	0.2861	LOCAL_REARRANGEMENT:+:[44139],TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2,RP11-57H14.3->chr10:114648494-114665870:+	HCT116_LARGE_INTESTINE	0.08	1	0.3219	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	LINC00511--SLC39A11	2	18	LINC00511	8867	chr17:70588342:-	SLC39A11	51270	chr17:70709120:-	ONLY_REF_SPLICE	YES	84	115	0.19	0.15	0.0238	0.2146	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	HCT116_LARGE_INTESTINE	0.15	0.19	0.2384	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	TCF7L2--RP11-57H14.3	3	11	TCF7L2	4529	chr10:114799885:+	RP11-57H14.3	25511	chr10:114665736:+	ONLY_REF_SPLICE	YES	311	4	0.04	0.78	0.0358	0.1311	LOCAL_REARRANGEMENT:+:[44139],TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2,RP11-57H14.3->chr10:114648494-114665870:+	HCT116_LARGE_INTESTINE	0.04	0.78	0.1669	TRUE	0	1	0	1	1	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	TCF7L2--RP11-57H14.3	1	13	TCF7L2	5673	chr10:114849299:+	RP11-57H14.3	25511	chr10:114665736:+	ONLY_REF_SPLICE	YES	318	4	0.04	0.78	0.0119	0.155	LOCAL_REARRANGEMENT:+:[44139],TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2,RP11-57H14.3->chr10:114648494-114665870:+	HCT116_LARGE_INTESTINE	0.04	0.78	0.1669	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	SPAG9--MBTD1	1	9	SPAG9	1512	chr17:49197715:-	MBTD1	58687	chr17:49279438:-	ONLY_REF_SPLICE	YES	79	80	0.11	0.11	0.0119	0.1073	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[56560],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HCT116_LARGE_INTESTINE	0.11	0.11	0.1192	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	FLYWCH1P1--TONSL	3	0	FLYWCH1P1	2065	chr3:180546574:-	TONSL	13012	chr8:145662034:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	FLYWCH1P1->FLYWCH-type_zinc_finger_1_pseudogene_1,chr3:180545765-180547638:-,TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein	HCT116_LARGE_INTESTINE	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	ANXA2--NARG2	2	0	ANXA2	17854	chr15:60656628:-	NARG2	44691	chr15:60742040:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	HCT116_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	ATG4D--EEF2	2	0	ATG4D	1431	chr19:10655001:+	EEF2	11424	chr19:3984348:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	ATG4D->autophagy_related_4D_cysteine_peptidase,chr19:10654571-10664094:+,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	HCT116_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	KIF22--NSMAF	2	0	KIF22	6675	chr16:29811369:+	NSMAF	29201	chr8:59512580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	KIF22->chr16:29802040-29816706:+,kinesin_family_member_22,NSMAF->chr8:59496063-59572403:-,neutral_sphingomyelinase_activation_associated_factor	HCT116_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	MYO1C--CDK2AP1	2	0	MYO1C	2213	chr17:1394894:-	CDK2AP1	31015	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	MYO1C->chr17:1367392-1396106:-,myosin_IC,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	HCT116_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	PANK2--MAVS	2	0	PANK2	1066	chr20:3869551:+	MAVS	18503	chr20:3835205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[20206],PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2,MAVS->chr20:3827487-3849280:+,mitochondrial_antiviral_signaling_protein	HCT116_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	RPL5--GNB1	2	0	RPL5	1093	chr1:93297674:+	GNB1	13719	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	HCT116_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	LRBA--SH3D19	1	1	LRBA	2301	chr4:151935579:-	SH3D19	88953	chr4:152070713:-	ONLY_REF_SPLICE	NO	123	80	0.02	0.02	0.0119	0.0119	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},YOSHIHARA_TCGA_num_samples[BLCA:1|HNSC:1|LUSC:1],{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[87024],LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,SH3D19->SH3_domain_containing_19,chr4:152023903-152246784:-	HCT116_LARGE_INTESTINE	0.02	0.02	0.0238	TRUE	0	2	0	1	2	TRUE	ACH-000971
KE39_STOMACH	FKBP2--DNAJC4	316	284	FKBP2	3309	chr11:64010783:+	DNAJC4	10747	chr11:64001366:+	ONLY_REF_SPLICE	YES	477	122	0.56	0.83	3.3368	2.9989	LOCAL_REARRANGEMENT:+:[6717],FKBP2->FK506_binding_protein_2,chr11:64008475-64011604:+,DNAJC4->DnaJ_heat_shock_protein_family_(Hsp40)_member_C4,chr11:63997750-64001758:+	KE39_STOMACH	0.56	0.83	6.3357	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ARPC1A--MYH16	224	246	ARPC1A	2200	chr7:98931040:+	MYH16	62672	chr7:98904232:+	ONLY_REF_SPLICE	YES	947	0	0.33	1	2.3654	2.5977	LOCAL_REARRANGEMENT:+:[14768],ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	KE39_STOMACH	0.33	1	4.9631	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	SOX5--LYRM5	182	132	SOX5	6193	chr12:24048832:-	LYRM5	36044	chr12:25356854:+	ONLY_REF_SPLICE	YES	53	178	0.86	0.64	1.9219	1.3939	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,LYRM5->LYR_motif_containing_5,chr12:25348150-25362579:+	KE39_STOMACH	0.64	0.86	3.3158	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CD47--IFT57	172	82	CD47	15528	chr3:107765985:-	IFT57	29517	chr3:107886711:-	INCL_NON_REF_SPLICE	YES	70	133	0.78	0.66	1.8163	0.8659	LOCAL_REARRANGEMENT:-:[69787],CD47->CD47_molecule,chr3:107762145-107809872:-,IFT57->chr3:107879659-107941417:-,intraflagellar_transport_57	KE39_STOMACH	0.66	0.78	2.6822	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	RNF10--SIRT4	150	100	RNF10	6561	chr12:120990501:+	SIRT4	25895	chr12:120741364:+	ONLY_REF_SPLICE	YES	260	0	0.49	1	1.5839	1.056	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,SIRT4->chr12:120740119-120751052:+,sirtuin_4	KE39_STOMACH	0.49	1	2.6399	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	C4orf19--USO1	108	3	C4orf19	1100	chr4:37455662:+	USO1	25654	chr4:76720775:+	ONLY_REF_SPLICE	YES	1	184	0.99	0.38	1.1404	0.0317	C4orf19->chr4:37455563-37625117:+,chromosome_4_open_reading_frame_19,USO1->USO1_vesicle_transport_factor,chr4:76649777-76735382:+	KE39_STOMACH	0.38	0.99	1.1721	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	SUMO2--FAM222B	90	58	SUMO2	1170	chr17:73178909:-	FAM222B	18513	chr17:27086894:-	ONLY_REF_SPLICE	YES	722	23	0.17	0.87	0.9504	0.6125	SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2,FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B	KE39_STOMACH	0.17	0.87	1.5629	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	SOX5--LYRM5	59	165	SOX5	6298	chr12:24048727:-	LYRM5	36044	chr12:25356854:+	ONLY_REF_SPLICE	YES	63	178	0.78	0.56	0.623	1.7423	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,LYRM5->LYR_motif_containing_5,chr12:25348150-25362579:+	KE39_STOMACH	0.56	0.78	2.3653	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	FKBP2--DNAJC4	14	286	FKBP2	3495	chr11:64010969:+	DNAJC4	10747	chr11:64001366:+	ONLY_REF_SPLICE	YES	434	122	0.41	0.71	0.1478	3.0201	LOCAL_REARRANGEMENT:+:[6717],FKBP2->FK506_binding_protein_2,chr11:64008475-64011604:+,DNAJC4->DnaJ_heat_shock_protein_family_(Hsp40)_member_C4,chr11:63997750-64001758:+	KE39_STOMACH	0.41	0.71	3.1679	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CNN2--ILF3	81	17	CNN2	6052	chr19:1036561:+	ILF3	15047	chr19:10781192:+	ONLY_REF_SPLICE	YES	275	486	0.26	0.17	0.8553	0.1795	CNN2->calponin_2,chr19:1026298-1039068:+,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	KE39_STOMACH	0.17	0.26	1.0348	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	RHBDF2--TEX2	71	40	RHBDF2	6284	chr17:74477457:-	TEX2	33939	chr17:62238293:-	ONLY_REF_SPLICE	YES	143	32	0.44	0.78	0.7497	0.4224	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),TEX2->chr17:62224587-62340661:-,testis_expressed_2	KE39_STOMACH	0.44	0.78	1.1721	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	NKD1--TBC1D1	66	43	NKD1	2226	chr16:50583466:+	TBC1D1	45645	chr4:38117331:+	ONLY_REF_SPLICE	YES	1827	216	0.06	0.34	0.6969	0.4541	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+	KE39_STOMACH	0.06	0.34	1.151	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	SUMO2--FAM222B	67	35	SUMO2	1170	chr17:73178909:-	FAM222B	18625	chr17:27086782:-	ONLY_REF_SPLICE	YES	722	22	0.12	0.82	0.7075	0.3696	SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2,FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B	KE39_STOMACH	0.12	0.82	1.0771	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ARPC1A--MYH16	5	248	ARPC1A	3232	chr7:98933107:+	MYH16	62672	chr7:98904232:+	ONLY_REF_SPLICE	YES	989	0	0.2	1	0.0528	2.6188	LOCAL_REARRANGEMENT:+:[14768],ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	KE39_STOMACH	0.2	1	2.6716	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	KRAS--SOX5	50	46	KRAS	2308	chr12:25398208:-	SOX5	23601	chr12:23999127:-	ONLY_REF_SPLICE	YES	2101	65	0.04	0.6	0.528	0.4857	KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KE39_STOMACH	0.04	0.6	1.0137	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CD47--IFT57	27	99	CD47	17375	chr3:107764138:-	IFT57	29517	chr3:107886711:-	INCL_NON_REF_SPLICE	YES	39	133	0.76	0.49	0.2851	1.0454	LOCAL_REARRANGEMENT:-:[69787],CD47->CD47_molecule,chr3:107762145-107809872:-,IFT57->chr3:107879659-107941417:-,intraflagellar_transport_57	KE39_STOMACH	0.49	0.76	1.3305	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ACSS1--BCAT1	34	48	ACSS1	14808	chr20:24994172:-	BCAT1	33398	chr12:25002883:-	ONLY_REF_SPLICE	YES	807	2	0.09	0.98	0.359	0.5069	ACSS1->acyl-CoA_synthetase_short-chain_family_member_1,chr20:24986868-25039616:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	KE39_STOMACH	0.09	0.98	0.8659	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	TGFB1--RBPMS	34	27	TGFB1	5866	chr19:41847788:-	RBPMS	26452	chr8:30361803:+	ONLY_REF_SPLICE	YES	86	45	0.41	0.58	0.359	0.2851	TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1,RBPMS->RNA_binding_protein_with_multiple_splicing,chr8:30241944-30429778:+	KE39_STOMACH	0.41	0.58	0.6441	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	SOX5--LYRM5	2	133	SOX5	6193	chr12:24048832:-	LYRM5	35849	chr12:25356659:+	ONLY_REF_SPLICE	YES	53	161	0.72	0.46	0.0211	1.4044	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,LYRM5->LYR_motif_containing_5,chr12:25348150-25362579:+	KE39_STOMACH	0.46	0.72	1.4255	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CCND1--PTMA	35	0	CCND1	5984	chr11:69466002:+	PTMA	17242	chr2:232576651:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3696	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KE39_STOMACH	1	1	0.3696	TRUE	0	0	0	2	0	TRUE	ACH-000507
KE39_STOMACH	METTL3--SALL2	9	101	METTL3	6292	chr14:21972016:-	SALL2	19324	chr14:21991710:-	INCL_NON_REF_SPLICE	NO	327	0	0.25	1	0.095	1.0665	LOCAL_REARRANGEMENT:-:[9715],METTL3->chr14:21966277-21979517:-,methyltransferase_like_3,SALL2->chr14:21989232-22005350:-,spalt-like_transcription_factor_2	KE39_STOMACH	0.25	1	1.1615	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	SOX5--LYRM5	3	124	SOX5	6298	chr12:24048727:-	LYRM5	36215	chr12:25357025:+	ONLY_REF_SPLICE	YES	63	1552	0.67	0.08	0.0317	1.3094	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,LYRM5->LYR_motif_containing_5,chr12:25348150-25362579:+	KE39_STOMACH	0.08	0.67	1.3411	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	FKBP2--DNAJC4	4	113	FKBP2	2556	chr11:64010030:+	DNAJC4	10747	chr11:64001366:+	ONLY_REF_SPLICE	YES	753	122	0.13	0.49	0.0422	1.1932	LOCAL_REARRANGEMENT:+:[6717],FKBP2->FK506_binding_protein_2,chr11:64008475-64011604:+,DNAJC4->DnaJ_heat_shock_protein_family_(Hsp40)_member_C4,chr11:63997750-64001758:+	KE39_STOMACH	0.13	0.49	1.2354	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ACSS1--BCAT1	24	31	ACSS1	14383	chr20:24994597:-	BCAT1	33398	chr12:25002883:-	ONLY_REF_SPLICE	YES	911	2	0.06	0.96	0.2534	0.3273	ACSS1->acyl-CoA_synthetase_short-chain_family_member_1,chr20:24986868-25039616:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	KE39_STOMACH	0.06	0.96	0.5807	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	SOX5--LYRM5	1	102	SOX5	6193	chr12:24048832:-	LYRM5	36215	chr12:25357025:+	ONLY_REF_SPLICE	NO	53	1552	0.66	0.06	0.0106	1.0771	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,LYRM5->LYR_motif_containing_5,chr12:25348150-25362579:+	KE39_STOMACH	0.06	0.66	1.0877	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	NTMT1--RP11-492E3.2	21	15	NTMT1	1295	chr9:132371457:+	RP11-492E3.2	12335	chr9:132342330:+	ONLY_REF_SPLICE	YES	179	3	0.17	0.92	0.2218	0.1584	LOCAL_REARRANGEMENT:+:[24328],NTMT1->N-terminal_Xaa-Pro-Lys_N-methyltransferase_1,chr9:132371163-132398209:+,RP11-492E3.2->chr9:132337688-132346835:+	KE39_STOMACH	0.17	0.92	0.3802	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CD47--IFT57	4	82	CD47	15530	chr3:107765983:-	IFT57	29514	chr3:107886714:-	INCL_NON_REF_SPLICE	YES	72	136	0.54	0.39	0.0422	0.8659	LOCAL_REARRANGEMENT:-:[69787],CD47->CD47_molecule,chr3:107762145-107809872:-,IFT57->chr3:107879659-107941417:-,intraflagellar_transport_57	KE39_STOMACH	0.39	0.54	0.9081	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CCND1--PTMA	23	0	CCND1	5984	chr11:69466002:+	PTMA	17215	chr2:232576624:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2429	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KE39_STOMACH	1	1	0.2429	TRUE	0	0	0	2	0	TRUE	ACH-000507
KE39_STOMACH	RNF10--SIRT4	1	78	RNF10	6561	chr12:120990501:+	SIRT4	25925	chr12:120741394:+	ONLY_REF_SPLICE	YES	260	1	0.23	0.99	0.0106	0.8237	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,SIRT4->chr12:120740119-120751052:+,sirtuin_4	KE39_STOMACH	0.23	0.99	0.8343	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	AC005152.2--VMP1	20	0	AC005152.2	5726	chr17:70116904:-	VMP1	42698	chr17:57842332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2112	0	AC005152.2->chr17:70033455-70217977:-,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KE39_STOMACH	1	1	0.2112	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CCND1--PTMA	17	0	CCND1	5984	chr11:69466002:+	PTMA	17212	chr2:232576621:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1795	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KE39_STOMACH	1	1	0.1795	TRUE	0	0	0	2	0	TRUE	ACH-000507
KE39_STOMACH	SUMO2--FAM222B	2	58	SUMO2	1602	chr17:73178477:-	FAM222B	18513	chr17:27086894:-	ONLY_REF_SPLICE	YES	1071	23	0.05	0.72	0.0211	0.6125	SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2,FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B	KE39_STOMACH	0.05	0.72	0.6336	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ZNF136--KCNA7	15	2	ZNF136	1143	chr19:12274021:+	KCNA7	14465	chr19:49574135:-	ONLY_REF_SPLICE	YES	11	0	0.61	1	0.1584	0.0211	ZNF136->chr19:12273879-12300064:+,zinc_finger_protein_136,KCNA7->chr19:49570675-49576198:-,potassium_voltage-gated_channel_subfamily_A_member_7	KE39_STOMACH	0.61	1	0.1795	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	EXT2--RP11-113D6.10	13	6	EXT2	12956	chr11:44151688:+	RP11-113D6.10	29818	chr11:18234628:+	ONLY_REF_SPLICE	YES	239	0	0.07	1	0.1373	0.0634	EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2,RP11-113D6.10->chr11:18230685-18236109:+	KE39_STOMACH	0.07	1	0.2007	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ARPC1A--MYH16	1	50	ARPC1A	2200	chr7:98931040:+	MYH16	63904	chr7:98908362:+	ONLY_REF_SPLICE	YES	947	71	0.05	0.42	0.0106	0.528	LOCAL_REARRANGEMENT:+:[14768],ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	KE39_STOMACH	0.05	0.42	0.5386	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ARPC1A--MYH16	9	16	ARPC1A	1107	chr7:98923627:+	MYH16	62672	chr7:98904232:+	ONLY_REF_SPLICE	YES	62	0	0.29	1	0.095	0.169	LOCAL_REARRANGEMENT:+:[14768],ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	KE39_STOMACH	0.29	1	0.264	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CTD-2319I12.2--SRCIN1	9	8	CTD-2319I12.2	1164	chr17:58156833:+	SRCIN1	12659	chr17:36720549:-	ONLY_REF_SPLICE	YES	0	5	1	0.77	0.095	0.0845	CTD-2319I12.2->chr17:58156670-58166056:+,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	KE39_STOMACH	0.77	1	0.1795	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	USP3-AS1--TAX1BP1	7	16	USP3-AS1	7939	chr15:63881028:-	TAX1BP1	35688	chr7:27867357:+	ONLY_REF_SPLICE	YES	11	600	0.68	0.04	0.0739	0.169	USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	KE39_STOMACH	0.04	0.68	0.2429	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	RNF10--SIRT4	4	26	RNF10	5361	chr12:120984404:+	SIRT4	25895	chr12:120741364:+	ONLY_REF_SPLICE	YES	345	0	0.08	1	0.0422	0.2746	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,SIRT4->chr12:120740119-120751052:+,sirtuin_4	KE39_STOMACH	0.08	1	0.3168	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	USP3-AS1--TAX1BP1	6	12	USP3-AS1	2001	chr15:63892788:-	TAX1BP1	33998	chr7:27855968:+	ONLY_REF_SPLICE	YES	16	466	0.53	0.04	0.0634	0.1267	USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	KE39_STOMACH	0.04	0.53	0.1901	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	USP3-AS1--TAX1BP1	4	19	USP3-AS1	4499	chr15:63886894:-	TAX1BP1	33998	chr7:27855968:+	ONLY_REF_SPLICE	YES	11	466	0.68	0.05	0.0422	0.2006	USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	KE39_STOMACH	0.05	0.68	0.2428	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ZNF136--NTF4	8	2	ZNF136	1143	chr19:12274021:+	NTF4	13768	chr19:49567119:-	ONLY_REF_SPLICE	YES	11	6	0.48	0.62	0.0845	0.0211	ZNF136->chr19:12273879-12300064:+,zinc_finger_protein_136,NTF4->chr19:49559050-49568333:-,neurotrophin_4	KE39_STOMACH	0.48	0.62	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	TEAD1--CTC-497E21.5	4	8	TEAD1	4496	chr11:12785981:+	CTC-497E21.5	29824	chr11:13076581:-	ONLY_REF_SPLICE	YES	49	0	0.2	1	0.0422	0.0845	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,CTC-497E21.5->chr11:13076162-13156386:-	KE39_STOMACH	0.2	1	0.1267	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	RHBDF2--TEX2	3	11	RHBDF2	6284	chr17:74477457:-	TEX2	36339	chr17:62232327:-	ONLY_REF_SPLICE	YES	143	58	0.09	0.19	0.0317	0.1162	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),TEX2->chr17:62224587-62340661:-,testis_expressed_2	KE39_STOMACH	0.09	0.19	0.1479	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ATG9A--TUBA4A	4	4	ATG9A	6837	chr2:220088307:-	TUBA4A	26823	chr2:220116952:-	ONLY_REF_SPLICE	YES	147	15	0.05	0.35	0.0422	0.0422	LOCAL_REARRANGEMENT:-:[19994],ATG9A->autophagy_related_9A,chr2:220074494-220094439:-,TUBA4A->chr2:220114433-220142892:-,tubulin_alpha_4a	KE39_STOMACH	0.05	0.35	0.0844	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	HBS1L--FABP7	5	0	HBS1L	5766	chr6:135360711:-	FABP7	33802	chr6:123101436:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	HBS1L->HBS1_like_translational_GTPase,chr6:135281516-135424194:-,FABP7->chr6:123100620-123105219:+,fatty_acid_binding_protein_7	KE39_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ARHGAP44--LINC00670	3	7	ARHGAP44	1353	chr17:12693208:+	LINC00670	34069	chr17:12487877:+	ONLY_REF_SPLICE	YES	11	0	0.48	1	0.0317	0.0739	ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+,LINC00670->chr17:12453099-12546171:+,long_intergenic_non-protein_coding_RNA_670	KE39_STOMACH	0.48	1	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	EIF1--KRT18	4	0	EIF1	1093	chr17:39845229:+	KRT18	8033	chr12:53342903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,KRT18->chr12:53342655-53346685:+,keratin_18	KE39_STOMACH	1	1	0.0422	TRUE	0	0	0	2	0	TRUE	ACH-000507
KE39_STOMACH	ARHGAP44--LINC00670	2	6	ARHGAP44	1353	chr17:12693208:+	LINC00670	35231	chr17:12493758:+	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0211	0.0634	ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+,LINC00670->chr17:12453099-12546171:+,long_intergenic_non-protein_coding_RNA_670	KE39_STOMACH	0.42	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	C9orf156--CA10	3	1	C9orf156	1153	chr9:100684700:-	CA10	19924	chr17:49825178:-	ONLY_REF_SPLICE	YES	11	0	0.27	1	0.0317	0.0106	C9orf156->chr9:100666771-100684852:-,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	KE39_STOMACH	0.27	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	KANSL1--TMIGD1	3	0	KANSL1	7536	chr17:44248221:-	TMIGD1	33979	chr17:28656547:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,TMIGD1->chr17:28643351-28661077:-,transmembrane_and_immunoglobulin_domain_containing_1	KE39_STOMACH	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	RNF10--SIRT4	3	0	RNF10	5361	chr12:120984404:+	SIRT4	27393	chr12:120750259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,SIRT4->chr12:120740119-120751052:+,sirtuin_4	KE39_STOMACH	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	TGFB1--RBPMS	1	7	TGFB1	5579	chr19:41848075:-	RBPMS	26452	chr8:30361803:+	ONLY_REF_SPLICE	NO	54	45	0.13	0.15	0.0106	0.0739	TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1,RBPMS->RNA_binding_protein_with_multiple_splicing,chr8:30241944-30429778:+	KE39_STOMACH	0.13	0.15	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ARHGAP24--TECRL	2	1	ARHGAP24	6161	chr4:86643125:+	TECRL	30664	chr4:65194274:-	ONLY_REF_SPLICE	YES	23	1	0.12	0.75	0.0211	0.0106	ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,TECRL->chr4:65140975-65275186:-,trans-2,3-enoyl-CoA_reductase-like	KE39_STOMACH	0.12	0.75	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ARHGAP24--TECRL	2	1	ARHGAP24	6161	chr4:86643125:+	TECRL	29612	chr4:65240941:-	ONLY_REF_SPLICE	YES	23	1	0.12	0.75	0.0211	0.0106	ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,TECRL->chr4:65140975-65275186:-,trans-2,3-enoyl-CoA_reductase-like	KE39_STOMACH	0.12	0.75	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ABR--UBB	2	0	ABR	28482	chr17:953290:-	UBB	44268	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	KE39_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	GNPTG--AP3D1	2	0	GNPTG	1384	chr16:1402307:+	AP3D1	35473	chr19:2102267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	KE39_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	KANSL1--TMIGD1	2	0	KANSL1	7536	chr17:44248221:-	TMIGD1	32872	chr17:28659176:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,TMIGD1->chr17:28643351-28661077:-,transmembrane_and_immunoglobulin_domain_containing_1	KE39_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MISP--RIPK4	2	0	MISP	1046	chr19:751171:+	RIPK4	15503	chr21:43169363:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	MISP->chr19:751126-764319:+,mitotic_spindle_positioning,RIPK4->chr21:43159529-43187266:-,receptor_interacting_serine/threonine_kinase_4	KE39_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	RPS3--ANP32A	2	0	RPS3	2292	chr11:75111821:+	ANP32A	20609	chr15:69080258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-	KE39_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ZNF136--NTF4	2	0	ZNF136	1143	chr19:12274021:+	NTF4	16836	chr19:49561603:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ZNF136->chr19:12273879-12300064:+,zinc_finger_protein_136,NTF4->chr19:49559050-49568333:-,neurotrophin_4	KE39_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ARHGAP44--MYOCD	1	1	ARHGAP44	1353	chr17:12693208:+	MYOCD	34127	chr17:12608445:+	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0106	0.0106	LOCAL_REARRANGEMENT:+:[20590],ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+,MYOCD->chr17:12569207-12672266:+,myocardin	KE39_STOMACH	0.15	1	0.0212	TRUE	0	1	0	1	1	TRUE	ACH-000507
KE39_STOMACH	COX10-AS1--RP11-84E24.3	1	1	COX10-AS1	1224	chr17:13972589:-	RP11-84E24.3	21185	chr17:70033186:+	ONLY_REF_SPLICE	YES	51	1	0.04	0.67	0.0106	0.0106	COX10-AS1->COX10_antisense_RNA_1,chr17:13659795-13972812:-,RP11-84E24.3->chr17:70026432-70034889:+	KE39_STOMACH	0.04	0.67	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	TEAD1--CTC-497E21.3	1	1	TEAD1	4496	chr11:12785981:+	CTC-497E21.3	30310	chr11:13022773:-	ONLY_REF_SPLICE	YES	49	0	0.04	1	0.0106	0.0106	LOCAL_INVERSION:+:-:[56339],TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,CTC-497E21.3->chr11:13022637-13030706:-	KE39_STOMACH	0.04	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000507
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT1	170	57	KMT2A	16644	chr11:118353210:+	MLLT1	59761	chr19:6218052:-	ONLY_REF_SPLICE	YES	11	29	0.95	0.89	2.4838	0.8328	Cosmic{samples=667,mutations=86,papers=29},Mitelman{AL_bi=2,Skin=2,ALL=2,AML=12},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.95	3.3166	TRUE	0	0	0	1	0	TRUE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT1--KMT2A	38	6	MLLT1	7274	chr19:6222132:-	KMT2A	31640	chr11:118354898:+	ONLY_REF_SPLICE	YES	23	10	0.66	0.81	0.5552	0.0877	MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	0.81	0.6429	TRUE	0	0	0	1	0	TRUE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP68--BASP1	2	0	CEP68	1163	chr2:65283662:+	BASP1	22089	chr5:17275317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	CEP68->centrosomal_protein_68,chr2:65283500-65314138:+,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPNE2--LAMTOR4	2	0	CPNE2	11789	chr16:57155672:+	LAMTOR4	26737	chr7:99747122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	CPNE2->chr16:57126449-57181878:+,copine_2,LAMTOR4->chr7:99746530-99753567:+,late_endosomal/lysosomal_adaptor,_MAPK_and_MTOR_activator_4	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EVL--KDM1A	2	0	EVL	9362	chr14:100563995:+	KDM1A	34519	chr1:23356962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+,KDM1A->chr1:23345941-23410182:+,lysine_demethylase_1A	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFC2--LAT2	2	0	RFC2	4007	chr7:73664069:-	LAT2	29722	chr7:73643274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_INVERSION:-:+:[1668],RFC2->chr7:73645829-73668774:-,replication_factor_C_subunit_2,LAT2->chr7:73613982-73644161:+,linker_for_activation_of_T-cells_family_member_2	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-001106
SKUT1_SOFT_TISSUE	GATAD2A--MAU2	213	46	GATAD2A	9305	chr19:19576423:+	MAU2	45973	chr19:19465164:+	ONLY_REF_SPLICE	YES	223	38	0.54	0.87	1.9333	0.4175	LOCAL_REARRANGEMENT:+:[27072],GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,MAU2->MAU2_sister_chromatid_cohesion_factor,chr19:19431490-19469563:+	SKUT1_SOFT_TISSUE	0.54	0.87	2.3508	TRUE	0	0	0	1	0	TRUE	ACH-000939
SKUT1_SOFT_TISSUE	KEAP1--SLC44A2	10	0	KEAP1	2045	chr19:10613373:-	SLC44A2	14643	chr19:10736929:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0908	0	LOCAL_INVERSION:-:+:[98716],KEAP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:10596796-10614417:-,kelch_like_ECH_associated_protein_1,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	SKUT1_SOFT_TISSUE	1	1	0.0908	TRUE	0	0	0	1	0	TRUE	ACH-000939
SKUT1_SOFT_TISSUE	KEAP1--SLC44A2	8	0	KEAP1	1501	chr19:10613917:-	SLC44A2	14643	chr19:10736929:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0726	0	LOCAL_INVERSION:-:+:[98716],KEAP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:10596796-10614417:-,kelch_like_ECH_associated_protein_1,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	SKUT1_SOFT_TISSUE	1	1	0.0726	TRUE	0	0	0	1	0	TRUE	ACH-000939
SKUT1_SOFT_TISSUE	TBCD--FN3K	6	3	TBCD	2365	chr17:80714091:+	FN3K	57549	chr17:80696365:+	ONLY_REF_SPLICE	YES	73	32	0.11	0.22	0.0545	0.0272	LOCAL_REARRANGEMENT:+:[867],TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D,FN3K->chr17:80693451-80709073:+,fructosamine_3_kinase	SKUT1_SOFT_TISSUE	0.11	0.22	0.0817	TRUE	0	0	0	1	0	TRUE	ACH-000939
SKUT1_SOFT_TISSUE	EPC2--MBD5	2	1	EPC2	11161	chr2:149522715:+	MBD5	37063	chr2:149225910:+	ONLY_REF_SPLICE	NO	32	5	0.09	0.38	0.0182	0.0091	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},EPC2->chr2:149402009-149545130:+,enhancer_of_polycomb_homolog_2,MBD5->chr2:148778580-149275805:+,methyl-CpG_binding_domain_protein_5	SKUT1_SOFT_TISSUE	0.09	0.38	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000939
SKUT1_SOFT_TISSUE	SPSB3--CLCN7	2	0	SPSB3	3527	chr16:1831359:-	CLCN7	15768	chr16:1511675:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	SPSB3->chr16:1826713-1843701:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_3,CLCN7->chloride_voltage-gated_channel_7,chr16:1494935-1525581:-	SKUT1_SOFT_TISSUE	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000939
COLO201_LARGE_INTESTINE	CCT6A--MRPS17	17	9	CCT6A	7430	chr7:56127333:+	MRPS17	16184	chr7:55973946:+	ONLY_REF_SPLICE	YES	455	1	0.05	0.96	0.1655	0.0876	LOCAL_INVERSION:+:+,chr7:[96391],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,MRPS17->chr7:55954970-56022932:+,chr7:56019512-56024192:+,mitochondrial_ribosomal_protein_S17	COLO201_LARGE_INTESTINE	0.05	0.96	0.2531	TRUE	0	0	0	1	0	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	BOP1--TONSL	10	1	BOP1	2339	chr8:145512776:-	TONSL	19089	chr8:145664118:-	ONLY_REF_SPLICE	YES	59	21	0.16	0.34	0.0974	0.0097	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein	COLO201_LARGE_INTESTINE	0.16	0.34	0.1071	TRUE	0	0	0	1	0	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	ZFHX3--C16orf47	4	3	ZFHX3	3793	chr16:73081651:-	C16orf47	31247	chr16:73177730:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0389	0.0292	LOCAL_REARRANGEMENT:-:[66939],ZFHX3->Oncogene{Bushman},chr16:72816784-73093597:-,zinc_finger_homeobox_3,C16orf47->chr16:73160536-73178346:-,chromosome_16_open_reading_frame_47	COLO201_LARGE_INTESTINE	0.64	1	0.0681	TRUE	0	1	0	1	1	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	NUBPL--CTD-2213F21.2	4	1	NUBPL	8237	chr14:32034254:+	CTD-2213F21.2	31292	chr14:31891054:+	ONLY_REF_SPLICE	YES	19	2	0.21	0.71	0.0389	0.0097	LOCAL_REARRANGEMENT:+:[37073],NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like,CTD-2213F21.2->chr14:31889492-31922089:+	COLO201_LARGE_INTESTINE	0.21	0.71	0.0486	TRUE	0	2	0	1	2	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	PHLDA1--S100A6	3	0	PHLDA1	4109	chr12:76424604:-	S100A6	12740	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	COLO201_LARGE_INTESTINE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	PRDM10--APLP2	2	0	PRDM10	1114	chr11:129872617:-	APLP2	37010	chr11:129979324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	LOCAL_INVERSION:-:+:[67002],PRDM10->PR_domain_10,chr11:129769601-129872730:-,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	COLO201_LARGE_INTESTINE	1	1	0.0195	TRUE	0	0	0	2	0	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-114H23.1--NAP1L1	2	0	RP11-114H23.1	1295	chr12:76377501:-	NAP1L1	16443	chr12:76461253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	LOCAL_REARRANGEMENT:-:[60875],RP11-114H23.1->chr12:75956982-76377795:-,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	COLO201_LARGE_INTESTINE	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-112L6.4--MYO15B	1	1	RP11-112L6.4	1468	chr20:48789554:+	MYO15B	22869	chr17:73607682:+	ONLY_REF_SPLICE	YES	2	36	0.5	0.05	0.0097	0.0097	RP11-112L6.4->chr20:48789087-48793096:+,MYO15B->chr17:73584139-73622929:+,myosin_XVB	COLO201_LARGE_INTESTINE	0.05	0.5	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	ZNF433--INSR	1	1	ZNF433	1205	chr19:12146352:-	INSR	13214	chr19:7267907:-	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0097	0.0097	ZNF433->chr19:12125547-12146556:-,zinc_finger_protein_433,INSR->chr19:7112266-7294045:-,insulin_receptor	COLO201_LARGE_INTESTINE	0.15	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000253
SW620_LARGE_INTESTINE	NSD1--ZNF346	137	118	NSD1	4006	chr5:176563031:+	ZNF346	52011	chr5:176491513:+	ONLY_REF_SPLICE	YES	59	37	0.81	0.87	1.5604	1.344	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[51836],NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	SW620_LARGE_INTESTINE	0.81	0.87	2.9044	TRUE	0	0	0	2	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	AKAP13--PDE8A	50	101	AKAP13	1228	chr15:85924029:+	PDE8A	69389	chr15:85607601:+	ONLY_REF_SPLICE	YES	10	23	0.94	0.87	0.5695	1.1504	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	SW620_LARGE_INTESTINE	0.87	0.94	1.7199	TRUE	0	1	0	2	1	TRUE	ACH-000651
SW620_LARGE_INTESTINE	ARNTL2--RP11-59N23.3	39	15	ARNTL2	15041	chr12:27556474:+	RP11-59N23.3	25602	chr12:21912848:+	ONLY_REF_SPLICE	YES	104	0	0.34	1	0.4442	0.1708	ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+,RP11-59N23.3->chr12:21815247-21912966:+	SW620_LARGE_INTESTINE	0.34	1	0.615	TRUE	0	0	0	2	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	NSD1--ZNF346	1	53	NSD1	3176	chr5:176562201:+	ZNF346	52011	chr5:176491513:+	ONLY_REF_SPLICE	YES	83	37	0.39	0.59	0.0114	0.6037	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[51836],NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	SW620_LARGE_INTESTINE	0.39	0.59	0.6151	TRUE	0	0	0	2	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	LIMK2--DEPDC5	3	10	LIMK2	2286	chr22:31621805:+	DEPDC5	24213	chr22:32150848:+	ONLY_REF_SPLICE	YES	38	17	0.25	0.43	0.0342	0.1139	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,DEPDC5->DEP_domain_containing_5,chr22:32149944-32303012:+	SW620_LARGE_INTESTINE	0.25	0.43	0.1481	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	LIMK2--DEPDC5	3	6	LIMK2	1186	chr22:31608410:+	DEPDC5	24213	chr22:32150848:+	ONLY_REF_SPLICE	YES	38	17	0.19	0.35	0.0342	0.0683	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,DEPDC5->DEP_domain_containing_5,chr22:32149944-32303012:+	SW620_LARGE_INTESTINE	0.19	0.35	0.1025	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	NCL--HNRNPA2B1	4	0	NCL	6884	chr2:232325380:-	HNRNPA2B1	23855	chr7:26233274:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HGNC_GENEFAM,NCL->chr2:232318242-232348352:-,nucleolin,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	SW620_LARGE_INTESTINE	1	1	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	LIMK2--DEPDC5	2	7	LIMK2	2286	chr22:31621805:+	DEPDC5	25882	chr22:32154532:+	ONLY_REF_SPLICE	YES	38	36	0.19	0.2	0.0228	0.0797	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,DEPDC5->DEP_domain_containing_5,chr22:32149944-32303012:+	SW620_LARGE_INTESTINE	0.19	0.2	0.1025	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	ACTR3C--RP11-728K20.1	3	1	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	35	0	0.1	1	0.0342	0.0114	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SW620_LARGE_INTESTINE	0.1	1	0.0456	TRUE	0	5	0	16	1	TRUE	ACH-000651
SW620_LARGE_INTESTINE	C19orf40--KPNB1	2	0	C19orf40	1138	chr19:33463252:+	KPNB1	18275	chr17:45741525:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	C19orf40->chr19:33463115-33469128:+,KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	CPNE1--ZMYND8	2	0	CPNE1	1078	chr20:34252801:-	ZMYND8	33144	chr20:45878183:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CPNE1->chr20:34213953-34252878:-,copine_1,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	CTD-2012K14.6--HMGB3	2	0	CTD-2012K14.6	1664	chr16:67597198:-	HMGB3	8691	chrX:150154068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CTD-2012K14.6->chr16:67583117-67597861:-,HMGB3->chrX:150148982-150159248:+,high_mobility_group_box_3	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	KIAA0247--COX16	2	0	KIAA0247	1233	chr14:70078545:+	COX16	17148	chr14:70809446:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	KIAA0247->chr14:70078313-70181859:+,COX16->COX16_cytochrome_c_oxidase_assembly_homolog,chr14:70791798-70826448:-	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	MRPS6--AXIN2	2	0	MRPS6	1045	chr21:35445568:+	AXIN2	15053	chr17:63554854:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,AXIN2->Oncogene{Bushman},axin_2,chr17:63524681-63557765:-	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	N4BP1--RP11-748H22.1	2	0	N4BP1	2735	chr16:48643686:-	RP11-748H22.1	22334	chr11:101464411:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	N4BP1->NEDD4_binding_protein_1,chr16:48572637-48654059:-,RP11-748H22.1->chr11:101455026-101465887:+	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	PSMD8--GLOD4	2	0	PSMD8	1426	chr19:38865601:+	GLOD4	13678	chr17:681984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PSMD8->chr19:38865176-38874464:+,proteasome_26S_subunit,_non-ATPase_8,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	SUGP2--PRPF38B	2	0	SUGP2	3133	chr19:19141760:-	PRPF38B	28323	chr1:109241226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-,PRPF38B->chr1:109234945-109244425:+,pre-mRNA_processing_factor_38B	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	1	1	0	8	1	TRUE	ACH-000651
SW620_LARGE_INTESTINE	ZEB1--RTN4	2	0	ZEB1	1798	chr10:31608221:+	RTN4	42850	chr2:55214834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
TE10_OESOPHAGUS	SENP6--ANKRD36BP2	25	4	SENP6	21323	chr6:76388643:+	ANKRD36BP2	54209	chr2:89104301:+	ONLY_REF_SPLICE	YES	3	0	0.91	1	0.2508	0.0401	SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,ANKRD36BP2->ankyrin_repeat_domain_36B_pseudogene_2,chr2:89065324-89106126:+	TE10_OESOPHAGUS	0.91	1	0.2909	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	SFN--NACC1	12	0	SFN	2215	chr1:27190847:+	NACC1	10989	chr19:13250335:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1204	0	SFN->chr1:27189633-27190947:+,stratifin,NACC1->chr19:13228917-13251955:+,nucleus_accumbens_associated_1	TE10_OESOPHAGUS	1	1	0.1204	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	MRPL21--IGHMBP2	9	7	MRPL21	1113	chr11:68671191:-	IGHMBP2	12106	chr11:68673537:+	ONLY_REF_SPLICE	YES	4	0	0.8	1	0.0903	0.0702	LOCAL_INVERSION:-:+:[7],MRPL21->chr11:68658744-68671303:-,mitochondrial_ribosomal_protein_L21,IGHMBP2->chr11:68671310-68708070:+,immunoglobulin_mu_binding_protein_2	TE10_OESOPHAGUS	0.8	1	0.1605	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	TCEB3--MAZ	6	0	TCEB3	5415	chr1:24077809:+	MAZ	21566	chr16:29822186:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0602	0	TCEB3->chr1:24069645-24088549:+,transcription_elongation_factor_B_subunit_3,MAZ->MYC_associated_zinc_finger_protein,chr16:29817427-29823649:+	TE10_OESOPHAGUS	1	1	0.0602	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	FAM96B--KDELR1	5	0	FAM96B	3268	chr16:66966059:-	KDELR1	12132	chr19:48886115:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0502	0	FAM96B->chr16:66965959-66968326:-,family_with_sequence_similarity_96_member_B,KDELR1->KDEL_endoplasmic_reticulum_protein_retention_receptor_1,chr19:48885827-48894810:-	TE10_OESOPHAGUS	1	1	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	ZNHIT6--COL24A1	5	0	ZNHIT6	4339	chr1:86167840:-	COL24A1	70666	chr1:86211189:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0502	0	LOCAL_REARRANGEMENT:-:[20800],ZNHIT6->chr1:86115106-86174116:-,zinc_finger_HIT-type_containing_6,COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1	TE10_OESOPHAGUS	1	1	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	ACOT2--UBE2R2	4	0	ACOT2	2777	chr14:74036100:+	UBE2R2	9785	chr9:33817819:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	ACOT2->acyl-CoA_thioesterase_2,chr14:74034324-74042357:+,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	TE10_OESOPHAGUS	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	CAPNS1--SPINT2	4	0	CAPNS1	1583	chr19:36631059:+	SPINT2	16993	chr19:38779778:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0401	0	CAPNS1->calpain_small_subunit_1,chr19:36630477-36641255:+,SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2	TE10_OESOPHAGUS	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	PLEC--RNF31	4	0	PLEC	28102	chr8:144998288:-	RNF31	41188	chr14:24617010:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	PLEC->chr8:144989321-145050902:-,plectin,RNF31->chr14:24615892-24629870:+,ring_finger_protein_31	TE10_OESOPHAGUS	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	PLEKHA5--PICALM	4	0	PLEKHA5	3233	chr12:19285384:+	PICALM	68674	chr11:85695016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0401	0	PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	TE10_OESOPHAGUS	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RP11-792D21.2--CCND1	4	0	RP11-792D21.2	8540	chr4:79603442:+	CCND1	18803	chr11:69467870:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	RP11-792D21.2->chr4:79567057-79603853:+,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	TE10_OESOPHAGUS	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	TMEM184B--FOXM1	4	0	TMEM184B	4573	chr22:38641989:-	FOXM1	23609	chr12:2975659:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	TMEM184B->chr22:38615298-38669040:-,transmembrane_protein_184B,FOXM1->Oncogene{Bushman},chr12:2966847-2986206:-,forkhead_box_M1	TE10_OESOPHAGUS	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	AGO1--ETS2	3	0	AGO1	7231	chr1:36360870:+	ETS2	41850	chr21:40196213:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	AGO1->argonaute_1,_RISC_catalytic_component,chr1:36335409-36395211:+,ETS2->ETS_proto-oncogene_2,_transcription_factor,Oncogene{Bushman},chr21:40177231-40196879:+	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	AGR2--OCIAD1	3	0	AGR2	11018	chr7:16832342:-	OCIAD1	24496	chr4:48853902:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	AGR2->anterior_gradient_2,_protein_disulphide_isomerase_family_member,chr7:16831435-16873057:-,OCIAD1->OCIA_domain_containing_1,chr4:48807229-48863834:+	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	ATIC--LCN2	3	0	ATIC	17846	chr2:216214363:+	LCN2	21365	chr9:130911744:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	ATIC->5-aminoimidazole-4-carboxamide_ribonucleotide_formyltransferase/IMP_cyclohydrolase,Oncogene{Bushman},chr2:216176540-216214487:+,LCN2->chr9:130911350-130915734:+,lipocalin_2	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	BCL2L2--MYH9	3	0	BCL2L2	1685	chr14:23768683:+	MYH9	50418	chr22:36678323:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	BCL2L2->ArcherDX_panel,BCL2_like_2,FoundationOne_panel,Oncogene{Bushman},chr14:23767999-23780968:+,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	CALR--NASP	3	0	CALR	4877	chr19:13054593:+	NASP	17559	chr1:46073055:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	CALR->calreticulin,chr19:13049392-13055303:+,NASP->chr1:46049518-46084566:+,nuclear_autoantigenic_sperm_protein	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	CDC37--B4GALT1	3	0	CDC37	9478	chr19:10502097:-	B4GALT1	20718	chr9:33112234:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	GAPDH--PLXND1	3	0	GAPDH	4230	chr12:6646346:+	PLXND1	12844	chr3:129304807:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,PLXND1->chr3:129274018-129325661:-,plexin_D1	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	GATAD2B--PRPF3	3	0	GATAD2B	1243	chr1:153895209:-	PRPF3	35879	chr1:150321633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,PRPF3->chr1:150293925-150325671:+,pre-mRNA_processing_factor_3	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	HAUS4--PIM3	3	0	HAUS4	8652	chr14:23415574:-	PIM3	14914	chr22:50357285:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HAUS4->HAUS_augmin_like_complex_subunit_4,chr14:23415437-23426370:-,PIM3->Oncogene{Bushman},Pim-3_proto-oncogene,_serine/threonine_kinase,chr22:50354161-50357728:+	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	HBS1L--RPS8	3	0	HBS1L	25445	chr6:135286056:-	RPS8	35746	chr1:45243683:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HBS1L->HBS1_like_translational_GTPase,chr6:135281516-135424194:-,RPS8->chr1:45240923-45244451:+,ribosomal_protein_S8	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	HIST1H2AC--SRSF4	3	0	HIST1H2AC	1548	chr6:26124920:+	SRSF4	16035	chr1:29475245:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HIST1H2AC->chr6:26124373-26139344:+,histone_cluster_1,_H2ac,SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	HMGB1--GADD45B	3	0	HMGB1	8000	chr13:31035579:-	GADD45B	15299	chr19:2477723:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1,GADD45B->chr19:2476120-2478257:+,growth_arrest_and_DNA_damage_inducible_beta	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	HSP90B1--FH	3	0	HSP90B1	1397	chr12:104324281:+	FH	20960	chr1:241676976:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1,FH->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:241660903-241683061:-,fumarate_hydratase	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	LETM1--BRIX1	3	0	LETM1	20068	chr4:1816015:-	BRIX1	33676	chr5:34925598:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	LETM1->chr4:1813206-1857974:-,leucine_zipper_and_EF-hand_containing_transmembrane_protein_1,BRIX1->BRX1,_biogenesis_of_ribosomes,chr5:34915481-34926101:+	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	NUMA1--ENO1	3	0	NUMA1	34003	chr11:71718700:-	ENO1	52656	chr1:8923006:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	OAZ1--USP5	3	0	OAZ1	1194	chr19:2269678:+	USP5	17642	chr12:6973040:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,USP5->chr12:6961292-6975796:+,ubiquitin_specific_peptidase_5	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	PIK3R4--CTNND1	3	0	PIK3R4	24958	chr3:130397977:-	CTNND1	52369	chr11:57584870:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	PIK3R4->chr3:130397779-130465673:-,phosphoinositide-3-kinase_regulatory_subunit_4,CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	PRDX5--KRT4	3	0	PRDX5	3293	chr11:64088199:+	KRT4	13904	chr12:53200913:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	GTEx&tcga_normals:3/3694=0.08%,PRDX5->chr11:64085560-64089283:+,peroxiredoxin_5,KRT4->chr12:53200333-53208335:-,keratin_4	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RP11-347C12.2--DAZAP1	3	0	RP11-347C12.2	25654	chr16:30278869:-	DAZAP1	41943	chr19:1417503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	RP11-347C12.2->chr16:30234230-30346695:-,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RP5-857K21.7--ATG3	3	0	RP5-857K21.7	1266	chr1:568402:+	ATG3	4922	chr3:112280654:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	RP5-857K21.7->chr1:568137-568818:+,ATG3->autophagy_related_3,chr3:112251356-112280893:-	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RPL18AP3--MMS19	3	0	RPL18AP3	1088	chr12:104659143:+	MMS19	22859	chr10:99218663:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	RPL18AP3->chr12:104659056-104659669:+,ribosomal_protein_L18a_pseudogene_3,MMS19->MMS19_homolog,_cytosolic_iron-sulfur_assembly_component,chr10:99218081-99258551:-	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	SH3BGRL3--MTATP8P1	3	0	SH3BGRL3	3077	chr1:26607743:+	MTATP8P1	6461	chr1:569034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	SH3BGRL3->SH3_domain_binding_glutamate_rich_protein_like_3,chr1:26605667-26608007:+,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	SMEK1--NELFCD	3	0	SMEK1	11665	chr14:91937181:-	NELFCD	24366	chr20:57562763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	SMEK1->chr14:91923955-91976898:-,NELFCD->chr20:57556263-57570188:+,negative_elongation_factor_complex_member_C/D	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	TCOF1--LEO1	3	0	TCOF1	10821	chr5:149755884:+	LEO1	32455	chr15:52258141:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	TCOF1->chr5:149737202-149779871:+,treacle_ribosome_biogenesis_factor_1,LEO1->LEO1_homolog,_Paf1/RNA_polymerase_II_complex_component,chr15:52230222-52264003:-	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	TRAF7--TBC1D10B	3	0	TRAF7	12314	chr16:2226788:+	TBC1D10B	23137	chr16:30371162:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	TRAF7->Oncogene{Bushman},TNF_receptor_associated_factor_7,chr16:2205699-2228130:+,TBC1D10B->TBC1_domain_family_member_10B,chr16:30368423-30381585:-	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	CAPZA1--FDFT1	2	0	CAPZA1	1711	chr1:113162505:+	FDFT1	24237	chr8:11683588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CAPZA1->capping_actin_protein_of_muscle_Z-line_alpha_subunit_1,chr1:113161795-113214241:+,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	CTD-2314B22.3--SELO	2	0	CTD-2314B22.3	9273	chr14:19894700:-	SELO	27888	chr22:50644746:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CTD-2314B22.3->chr14:19854098-19925348:-,SELO->chr22:50639408-50656045:+	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	FAF1--RP11-776H12.1	2	0	FAF1	7098	chr1:51204535:-	RP11-776H12.1	37971	chr1:61006105:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,RP11-776H12.1->chr1:61005921-61106163:-	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	FGFR2--GDI2	2	0	FGFR2	1497	chr10:123357476:-	GDI2	41020	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	GAPDH--DMAP1	2	0	GAPDH	5046	chr12:6647162:+	DMAP1	8676	chr1:44679381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,DMAP1->DNA_methyltransferase_1_associated_protein_1,chr1:44679127-44686353:+	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	HSP90B1--ZWILCH	2	0	HSP90B1	6280	chr12:104331584:+	ZWILCH	37669	chr15:66840689:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1,ZWILCH->chr15:66797297-66842115:+,zwilch_kinetochore_protein	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	MBD2--PPP1CB	2	0	MBD2	10258	chr18:51686135:-	PPP1CB	17267	chr2:28974904:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RC3H2--PTPN13	2	0	RC3H2	9887	chr9:125639750:-	PTPN13	45842	chr4:87655456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RC3H2->chr9:125606835-125667620:-,ring_finger_and_CCCH-type_domains_2,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RCC1--MNAT1	2	0	RCC1	2175	chr1:28834672:+	MNAT1	27690	chr14:61346432:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RP11-435B5.4--PHLDA1	2	0	RP11-435B5.4	2843	chr1:143465380:-	PHLDA1	23438	chr12:76423872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RP11-435B5.4->chr1:143354963-143467632:-,PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RP4-756H11.3--CSNK2A2	2	0	RP4-756H11.3	1089	chr7:66119613:+	CSNK2A2	10601	chr16:58230748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RP4-756H11.3->chr7:66119525-66134842:+,CSNK2A2->casein_kinase_2_alpha_2,chr16:58191811-58231824:-	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	TATDN1--MTCH2	2	0	TATDN1	9771	chr8:125520715:-	MTCH2	27689	chr11:47647293:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	ZNF271--RPRD1A	2	0	ZNF271	1951	chr18:32871196:+	RPRD1A	22631	chr18:33573263:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	ZNF271->chr18:32870246-32890730:+,RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	ZNF483--FLNB	2	0	ZNF483	1104	chr9:114287542:+	FLNB	43621	chr3:58118535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	ZNF483->chr9:114287439-114340124:+,zinc_finger_protein_483,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	ZNF638--PNO1	2	0	ZNF638	2332	chr2:71558995:+	PNO1	55151	chr2:68400479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638,PNO1->chr2:68384976-68403370:+,partner_of_NOB1_homolog	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
NCIH1105_LUNG	UQCRC2--LCMT1	110	62	UQCRC2	4162	chr16:21969920:+	LCMT1	26953	chr16:25162875:+	ONLY_REF_SPLICE	YES	185	111	0.48	0.61	1.2687	0.7151	UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,LCMT1->chr16:25123050-25189552:+,leucine_carboxyl_methyltransferase_1	NCIH1105_LUNG	0.48	0.61	1.9838	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	CCDC171--SNAPC3	34	10	CCDC171	16066	chr9:15695335:+	SNAPC3	58994	chr9:15433550:+	ONLY_REF_SPLICE	YES	41	109	0.52	0.29	0.3921	0.1153	LOCAL_REARRANGEMENT:+:[86944],CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171,SNAPC3->Oncogene{Bushman},chr9:15422702-15465951:+,small_nuclear_RNA_activating_complex_polypeptide_3	NCIH1105_LUNG	0.29	0.52	0.5074	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	TMCO3--C17orf85	13	10	TMCO3	8708	chr13:114164739:+	C17orf85	26252	chr17:3728344:-	ONLY_REF_SPLICE	YES	155	33	0.13	0.41	0.1499	0.1153	TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,C17orf85->chr17:3714460-3749545:-	NCIH1105_LUNG	0.13	0.41	0.2652	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	TMCO3--C17orf85	9	7	TMCO3	8708	chr13:114164739:+	C17orf85	29250	chr17:3725346:-	ONLY_REF_SPLICE	YES	155	59	0.09	0.21	0.1038	0.0807	TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,C17orf85->chr17:3714460-3749545:-	NCIH1105_LUNG	0.09	0.21	0.1845	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	SH3GL2--ZNF418	7	6	SH3GL2	4448	chr9:17747132:+	ZNF418	22649	chr19:58439415:-	ONLY_REF_SPLICE	YES	40	0	0.25	1	0.0807	0.0692	SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+,ZNF418->chr19:58433252-58446761:-,zinc_finger_protein_418	NCIH1105_LUNG	0.25	1	0.1499	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	UQCRC2--LCMT1	2	18	UQCRC2	4162	chr16:21969920:+	LCMT1	30265	chr16:25175919:+	ONLY_REF_SPLICE	NO	185	110	0.1	0.15	0.0231	0.2076	UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,LCMT1->chr16:25123050-25189552:+,leucine_carboxyl_methyltransferase_1	NCIH1105_LUNG	0.1	0.15	0.2307	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	ANKS3--PPL	3	1	ANKS3	10461	chr16:4764052:-	PPL	34324	chr16:4942214:-	ONLY_REF_SPLICE	YES	41	21	0.09	0.16	0.0346	0.0115	ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,PPL->chr16:4932508-5010742:-,periplakin	NCIH1105_LUNG	0.09	0.16	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	CASC9--RP11-300E4.2	3	0	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH1105_LUNG	1	1	0.0346	TRUE	0	23	0	19	23	TRUE	ACH-000780
NCIH1105_LUNG	UQCRC2--LCMT1	3	0	UQCRC2	1797	chr16:21964777:+	LCMT1	30265	chr16:25175919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,LCMT1->chr16:25123050-25189552:+,leucine_carboxyl_methyltransferase_1	NCIH1105_LUNG	1	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	SH3GL2--ZNF418	1	7	SH3GL2	5538	chr9:17755831:+	ZNF418	22649	chr19:58439415:-	ONLY_REF_SPLICE	YES	44	0	0.15	1	0.0115	0.0807	SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+,ZNF418->chr19:58433252-58446761:-,zinc_finger_protein_418	NCIH1105_LUNG	0.15	1	0.0922	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	ANKS3--PPL	2	0	ANKS3	10461	chr16:4764052:-	PPL	36203	chr16:4940335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,PPL->chr16:4932508-5010742:-,periplakin	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	ATF3--NSL1	2	0	ATF3	5237	chr1:212788603:+	NSL1	13142	chr1:212960979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ATF3->Oncogene{Bushman},activating_transcription_factor_3,chr1:212738676-212794119:+,NSL1->NSL1,_MIS12_kinetochore_complex_component,chr1:212899495-212965124:-	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	BAI3--C9orf3	2	0	BAI3	4578	chr6:69349324:+	C9orf3	73774	chr9:97842976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	BAI3->chr6:69345259-70099403:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	C20orf26--LINC00237	2	0	C20orf26	41680	chr20:20279030:+	LINC00237	50697	chr20:21074493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	C20orf26->chr20:20033158-20341346:+,LINC00237->chr20:21068245-21086999:-,long_intergenic_non-protein_coding_RNA_237	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	CCDC82--SOGA1	2	0	CCDC82	1080	chr11:96123008:-	SOGA1	23342	chr20:35467844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	CCDC82->chr11:96085933-96123087:-,coiled-coil_domain_containing_82,SOGA1->chr20:35405845-35492089:-,suppressor_of_glucose,_autophagy_associated_1	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	CLDN12--ID4	2	0	CLDN12	4838	chr7:90034926:+	ID4	26120	chr6:19838815:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	CLDN12->chr7:90013035-90142716:+,claudin_12,ID4->Oncogene{Bushman},chr6:19837617-19840915:+,inhibitor_of_DNA_binding_4,_HLH_protein	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	CTD-2231H16.1--NDUFS6	2	0	CTD-2231H16.1	1126	chr5:92391:+	NDUFS6	8681	chr5:1814453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	CTD-2231H16.1->chr5:92266-139978:+,NDUFS6->NADH:ubiquinone_oxidoreductase_subunit_S6,chr5:1801514-1816719:+	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	EML4--QRICH1	2	0	EML4	11867	chr2:42511843:+	QRICH1	39686	chr3:49095323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	HP1BP3--EIF4G3	2	0	HP1BP3	1129	chr1:21113688:-	EIF4G3	28440	chr1:21415706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	NCIH1105_LUNG	1	1	0.0231	TRUE	0	2	0	6	0	TRUE	ACH-000780
NCIH1105_LUNG	PIK3C2A--MAP4K5	2	0	PIK3C2A	14422	chr11:17156658:-	MAP4K5	69265	chr14:50904726:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,MAP4K5->chr14:50885219-51027844:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_5	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	POLR3H--HOXA9	2	0	POLR3H	2952	chr22:41936703:-	HOXA9	18606	chr7:27204586:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	POLR3H->chr22:41921808-41940610:-,polymerase_(RNA)_III_subunit_H,HOXA9->Oncogene{Bushman},chr7:27202054-27210117:-,homeobox_A9	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	PTPRN2--CSGALNACT2	2	0	PTPRN2	3463	chr7:158282427:-	CSGALNACT2	33089	chr10:43650345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,CSGALNACT2->chondroitin_sulfate_N-acetylgalactosaminyltransferase_2,chr10:43633934-43680756:+	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	RP11-944L7.4--KIFAP3	2	0	RP11-944L7.4	1095	chr3:44727051:-	KIFAP3	30489	chr1:169930376:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RP11-944L7.4->chr3:44598849-44727145:-,KIFAP3->chr1:169890467-170054349:-,kinesin_associated_protein_3	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	SPIN1--GNAS	2	0	SPIN1	1120	chr9:91003453:+	GNAS	33527	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx&tcga_normals:1/3694=0.03%,SPIN1->chr9:91003334-91093609:+,spindlin_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1105_LUNG	1	1	0.0231	TRUE	0	1	0	4	0	TRUE	ACH-000780
NCIH1105_LUNG	WDR65--GTF2I	2	0	WDR65	1762	chr1:43638581:+	GTF2I	67691	chr7:74173110:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	WDR65->chr1:43637820-43720029:+,GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	XRN2--DROSHA	2	0	XRN2	1170	chr20:21284111:+	DROSHA	52226	chr5:31451747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,DROSHA->chr5:31400604-31532303:-,drosha_ribonuclease_III	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	ZNF449--AP2A2	2	0	ZNF449	2494	chrX:134481397:+	AP2A2	30354	chr11:988552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ZNF449->chrX:134478721-134497077:+,zinc_finger_protein_449,AP2A2->adaptor_related_protein_complex_2_alpha_2_subunit,chr11:924894-1012239:+	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	ZNF462--RAD23B	2	0	ZNF462	14221	chr9:109701388:+	RAD23B	31913	chr9:110062422:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ZNF462->chr9:109625378-109775915:+,zinc_finger_protein_462,RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	VWDE--PHF14	1	2	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	NO	76	45	0.04	0.06	0.0115	0.0231	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1105_LUNG	0.04	0.06	0.0346	TRUE	0	6	0	17	2	TRUE	ACH-000780
MKN45_STOMACH	CAPZA2--AC006159.3	1227	185	CAPZA2	3371	chr7:116502704:+	AC006159.3	27753	chr7:116213798:-	ONLY_REF_SPLICE	YES	456	0	0.76	1	12.9503	1.9526	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,AC006159.3->chr7:116211014-116254874:-	MKN45_STOMACH	0.76	1	14.9029	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	LINC00511--SLC39A11	136	87	LINC00511	8867	chr17:70588342:-	SLC39A11	52513	chr17:70645407:-	ONLY_REF_SPLICE	YES	53	30	0.81	0.88	1.4354	0.9182	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	MKN45_STOMACH	0.81	0.88	2.3536	TRUE	0	1	0	5	1	TRUE	ACH-000356
MKN45_STOMACH	VAV2--CCDC67	115	62	VAV2	6362	chr9:136726496:-	CCDC67	43652	chr11:93088537:+	ONLY_REF_SPLICE	YES	37	0	0.83	1	1.2138	0.6544	{Klijn_CCL:Stomach=1},VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,CCDC67->chr11:93063137-93171653:+,coiled-coil_domain_containing_67	MKN45_STOMACH	0.83	1	1.8682	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	CBL--FOXR1	110	70	CBL	1570	chr11:119077321:+	FOXR1	27279	chr11:118842623:+	INCL_NON_REF_SPLICE	YES	67	0	0.73	1	1.161	0.7388	CBL->ArcherDX_panel,Cbl_proto-oncogene,FoundationOne_panel,Oncogene{Bushman},chr11:119076752-119178859:+,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	MKN45_STOMACH	0.73	1	1.8998	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	GPBP1L1--IPP	97	101	GPBP1L1	6695	chr1:46124700:-	IPP	28389	chr1:46193470:-	ONLY_REF_SPLICE	YES	135	28	0.59	0.88	1.0238	1.066	LOCAL_REARRANGEMENT:-:[6211],GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,IPP->chr1:46159996-46216322:-,intracisternal_A_particle-promoted_polypeptide	MKN45_STOMACH	0.59	0.88	2.0898	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TPX2--BCL2L1	106	64	TPX2	1351	chr20:30327424:+	BCL2L1	26491	chr20:30310133:-	ONLY_REF_SPLICE	YES	462	573	0.27	0.23	1.1188	0.6755	LOCAL_INVERSION:+:-:[15282],TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	MKN45_STOMACH	0.23	0.27	1.7943	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ARID1A--RPS6KA1	85	68	ARID1A	7728	chr1:27059283:+	RPS6KA1	44902	chr1:26897940:+	ONLY_REF_SPLICE	YES	27	42	0.85	0.78	0.8971	0.7177	{Klijn_CCL:Stomach=1},ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,RPS6KA1->Oncogene{Bushman},chr1:26856252-26901521:+,ribosomal_protein_S6_kinase_A1	MKN45_STOMACH	0.78	0.85	1.6148	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	CAPZA2--AC006159.3	84	33	CAPZA2	3371	chr7:116502704:+	AC006159.3	29057	chr7:116211284:-	ONLY_REF_SPLICE	YES	456	212	0.2	0.36	0.8866	0.3483	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,AC006159.3->chr7:116211014-116254874:-	MKN45_STOMACH	0.2	0.36	1.2349	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TPX2--BCL2L1	29	70	TPX2	1351	chr20:30327424:+	BCL2L1	26473	chr20:30310151:-	ONLY_REF_SPLICE	YES	462	649	0.18	0.13	0.3061	0.7388	LOCAL_INVERSION:+:-:[15282],TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	MKN45_STOMACH	0.13	0.18	1.0449	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ETNK1--RP11-268P4.5	28	26	ETNK1	6235	chr12:22814139:+	RP11-268P4.5	20978	chr12:22771419:+	ONLY_REF_SPLICE	YES	109	1	0.33	0.98	0.2955	0.2744	LOCAL_REARRANGEMENT:+:[6208],ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,RP11-268P4.5->chr12:22754359-22771801:+	MKN45_STOMACH	0.33	0.98	0.5699	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	LINC00511--SLC39A11	8	89	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	53	26	0.65	0.79	0.0844	0.9393	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	MKN45_STOMACH	0.65	0.79	1.0237	TRUE	0	5	0	7	4	TRUE	ACH-000356
MKN45_STOMACH	CBL--FOXR1	17	33	CBL	1571	chr11:119077322:+	FOXR1	28362	chr11:118849492:+	ONLY_REF_SPLICE	YES	68	0	0.42	1	0.1794	0.3483	CBL->ArcherDX_panel,Cbl_proto-oncogene,FoundationOne_panel,Oncogene{Bushman},chr11:119076752-119178859:+,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	MKN45_STOMACH	0.42	1	0.5277	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ETNK1--RP11-268P4.5	17	33	ETNK1	6235	chr12:22814139:+	RP11-268P4.5	19859	chr12:22754286:+	INCL_NON_REF_SPLICE	NO	109	0	0.31	1	0.1794	0.3483	LOCAL_REARRANGEMENT:+:[6208],ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,RP11-268P4.5->chr12:22754359-22771801:+	MKN45_STOMACH	0.31	1	0.5277	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	PEAK1--LINGO1	19	17	PEAK1	2202	chr15:77657505:-	LINGO1	45893	chr15:77908242:-	ONLY_REF_SPLICE	YES	3	3	0.92	0.92	0.2005	0.1794	PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1,LINGO1->chr15:77905369-78113242:-,leucine_rich_repeat_and_Ig_domain_containing_1	MKN45_STOMACH	0.92	0.92	0.3799	TRUE	0	1	0	1	1	TRUE	ACH-000356
MKN45_STOMACH	PCNXL2--ASXL3	20	10	PCNXL2	23458	chr1:233296029:-	ASXL3	54264	chr18:31187558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2111	0.1055	PCNXL2->chr1:233119181-233431459:-,ASXL3->additional_sex_combs_like_3,_transcriptional_regulator,chr18:31158579-31331156:+	MKN45_STOMACH	1	1	0.3166	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	LGR4--LIN7C	20	5	LGR4	2730	chr11:27434336:-	LIN7C	24990	chr11:27523467:-	ONLY_REF_SPLICE	YES	687	17	0.04	0.6	0.2111	0.0528	LOCAL_REARRANGEMENT:-:[21801],LGR4->chr11:27387508-27494322:-,leucine-rich_repeat_containing_G_protein-coupled_receptor_4,LIN7C->chr11:27516123-27528320:-,lin-7_homolog_C,_crumbs_cell_polarity_complex_component	MKN45_STOMACH	0.04	0.6	0.2639	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ARID2--SCAF11	13	13	ARID2	22499	chr12:46254732:+	SCAF11	35483	chr12:46369517:-	ONLY_REF_SPLICE	YES	29	153	0.47	0.15	0.1372	0.1372	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_INVERSION:+:-:[11091],ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-	MKN45_STOMACH	0.15	0.47	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	LIN52--PAPLN	13	10	LIN52	6088	chr14:74567941:+	PAPLN	16004	chr14:73711352:+	ONLY_REF_SPLICE	YES	39	0	0.37	1	0.1372	0.1055	LIN52->chr14:74551499-74667936:+,lin-52_DREAM_MuvB_core_complex_component,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	MKN45_STOMACH	0.37	1	0.2427	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	PIGL--AC015922.5	14	5	PIGL	1271	chr17:16120775:+	AC015922.5	26044	chr17:15753738:+	ONLY_REF_SPLICE	YES	97	0	0.16	1	0.1478	0.0528	PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L,AC015922.5->chr17:15732683-15767467:+	MKN45_STOMACH	0.16	1	0.2006	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ZC3H3--TSTA3	14	4	ZC3H3	5747	chr8:144589916:-	TSTA3	18808	chr8:144698893:-	ONLY_REF_SPLICE	YES	52	26	0.26	0.41	0.1478	0.0422	LOCAL_REARRANGEMENT:-:[71165],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,TSTA3->chr8:144694788-144700218:-,tissue_specific_transplantation_antigen_P35B	MKN45_STOMACH	0.26	0.41	0.19	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ETNK1--RP11-268P4.5	6	33	ETNK1	6235	chr12:22814139:+	RP11-268P4.5	19856	chr12:22754283:+	INCL_NON_REF_SPLICE	NO	109	0	0.26	1	0.0633	0.3483	LOCAL_REARRANGEMENT:+:[6208],ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,RP11-268P4.5->chr12:22754359-22771801:+	MKN45_STOMACH	0.26	1	0.4116	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	PEAK1--LINGO1	12	7	PEAK1	1139	chr15:77712348:-	LINGO1	45893	chr15:77908242:-	ONLY_REF_SPLICE	YES	1	3	0.95	0.86	0.1267	0.0739	PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1,LINGO1->chr15:77905369-78113242:-,leucine_rich_repeat_and_Ig_domain_containing_1	MKN45_STOMACH	0.86	0.95	0.2006	TRUE	0	1	0	1	1	TRUE	ACH-000356
MKN45_STOMACH	ARID2--SCAF11	11	10	ARID2	22499	chr12:46254732:+	SCAF11	38028	chr12:46357971:-	ONLY_REF_SPLICE	YES	29	129	0.42	0.14	0.1161	0.1055	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_INVERSION:+:-:[11091],ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-	MKN45_STOMACH	0.14	0.42	0.2216	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TBC1D22A--GRAMD4	10	12	TBC1D22A	10096	chr22:47193517:+	GRAMD4	29587	chr22:47022648:+	ONLY_REF_SPLICE	YES	17	1	0.56	0.96	0.1055	0.1267	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	MKN45_STOMACH	0.56	0.96	0.2322	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	GCN1L1--PLA2G1B	10	10	GCN1L1	42933	chr12:120567080:-	PLA2G1B	48849	chr12:120763823:-	ONLY_REF_SPLICE	YES	438	1	0.04	0.95	0.1055	0.1055	GCN1L1->chr12:120565007-120632513:-,PLA2G1B->chr12:120759914-120765592:-,phospholipase_A2_group_IB	MKN45_STOMACH	0.04	0.95	0.211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	PKM--HEXA	7	0	PKM	1708	chr15:72523457:-	HEXA	31284	chr15:72648958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0739	0	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha	MKN45_STOMACH	1	1	0.0739	TRUE	0	0	0	2	0	TRUE	ACH-000356
MKN45_STOMACH	AXIN1--RHBDF1	6	1	AXIN1	8836	chr16:347056:-	RHBDF1	22525	chr16:113717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0633	0.0106	AXIN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},axin_1,chr16:337440-402673:-,RHBDF1->chr16:108058-126354:-,rhomboid_5_homolog_1_(Drosophila)	MKN45_STOMACH	1	1	0.0739	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	MKRN2--PPARG	5	0	MKRN2	1163	chr3:12598675:+	PPARG	20504	chr3:12421203:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	MKN45_STOMACH	1	1	0.0528	TRUE	0	1	0	1	1	TRUE	ACH-000356
MKN45_STOMACH	EZH1--BECN1	4	3	EZH1	5653	chr17:40879653:-	BECN1	28810	chr17:40977249:-	ONLY_REF_SPLICE	YES	28	0	0.2	1	0.0422	0.0317	LOCAL_REARRANGEMENT:-:[65081],EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BECN1->beclin_1,chr17:40962152-40985367:-	MKN45_STOMACH	0.2	1	0.0739	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TBC1D22A--GRAMD4	4	2	TBC1D22A	10096	chr22:47193517:+	GRAMD4	34102	chr22:47058937:+	ONLY_REF_SPLICE	YES	17	34	0.26	0.15	0.0422	0.0211	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	MKN45_STOMACH	0.15	0.26	0.0633	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	LIN52--PAPLN	2	8	LIN52	5004	chr14:74564563:+	PAPLN	16004	chr14:73711352:+	ONLY_REF_SPLICE	YES	60	0	0.14	1	0.0211	0.0844	LIN52->chr14:74551499-74667936:+,lin-52_DREAM_MuvB_core_complex_component,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	MKN45_STOMACH	0.14	1	0.1055	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	EZH1--BECN1	3	3	EZH1	5653	chr17:40879653:-	BECN1	28780	chr17:40977279:-	INCL_NON_REF_SPLICE	YES	28	0	0.18	1	0.0317	0.0317	LOCAL_REARRANGEMENT:-:[65081],EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BECN1->beclin_1,chr17:40962152-40985367:-	MKN45_STOMACH	0.18	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	PCNXL2--ASXL3	1	10	PCNXL2	23458	chr1:233296029:-	ASXL3	53142	chr18:31185501:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0106	0.1055	PCNXL2->chr1:233119181-233431459:-,ASXL3->additional_sex_combs_like_3,_transcriptional_regulator,chr18:31158579-31331156:+	MKN45_STOMACH	1	1	0.1161	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	GLG1--CTRB2	3	0	GLG1	1458	chr16:74640555:-	CTRB2	37515	chr16:75239411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,CTRB2->chr16:75237994-75241083:-,chymotrypsinogen_B2	MKN45_STOMACH	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	MKRN2--PPARG	3	0	MKRN2	1163	chr3:12598675:+	PPARG	16966	chr3:12353879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	MKN45_STOMACH	1	1	0.0317	TRUE	0	1	0	1	1	TRUE	ACH-000356
MKN45_STOMACH	NFAT5--CYB5B	3	0	NFAT5	9975	chr16:69689702:+	CYB5B	35547	chr16:69481053:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	MKN45_STOMACH	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TBC1D22A--GRAMD4	2	3	TBC1D22A	10096	chr22:47193517:+	GRAMD4	30798	chr22:47033737:+	ONLY_REF_SPLICE	YES	17	35	0.23	0.12	0.0211	0.0317	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	MKN45_STOMACH	0.12	0.23	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	RP11-712B9.2--CTD-3138F19.1	2	1	RP11-712B9.2	3662	chr11:94890967:+	CTD-3138F19.1	16345	chr11:29903029:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0211	0.0106	RP11-712B9.2->chr11:94883703-94967268:+,CTD-3138F19.1->chr11:29735456-29903261:+	MKN45_STOMACH	0.43	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ANXA4--INTS6	2	0	ANXA4	10899	chr2:70033630:+	INTS6	30369	chr13:52026191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ANXA4->annexin_A4,chr2:69871557-70053596:+,INTS6->Oncogene{Bushman},chr13:51928213-52028400:-,integrator_complex_subunit_6	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	CDK18--SP1	2	0	CDK18	1202	chr1:205473924:+	SP1	19817	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CDK18->Oncogene{Bushman},chr1:205473723-205501921:+,cyclin-dependent_kinase_18,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	DANCR--GNB1	2	0	DANCR	1530	chr4:53579126:+	GNB1	9431	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	8	0	TRUE	ACH-000356
MKN45_STOMACH	FAM162A--CDV3	2	0	FAM162A	1124	chr3:122103146:+	CDV3	14103	chr3:133293883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	FAM162A->chr3:122103023-122131181:+,family_with_sequence_similarity_162_member_A,CDV3->CDV3_homolog,chr3:133292574-133309105:+	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	GNG7--GNAS	2	0	GNG7	3333	chr19:2646222:-	GNAS	30398	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GNG7->G_protein_subunit_gamma_7,chr19:2511217-2702707:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	KIDINS220--EIF2S3	2	0	KIDINS220	22273	chr2:8918769:-	EIF2S3	57258	chrX:24094839:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	KIDINS220->chr2:8865408-8977760:-,kinase_D-interacting_substrate_220kDa,EIF2S3->chrX:24072833-24096088:+,eukaryotic_translation_initiation_factor_2_subunit_gamma	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	LINC00511--SLC39A11	2	0	LINC00511	3455	chr17:70614455:-	SLC39A11	52513	chr17:70645407:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	NBPF3--ING2	2	0	NBPF3	4182	chr1:21771712:+	ING2	32852	chr4:184431435:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NBPF3->chr1:21766621-21811498:+,neuroblastoma_breakpoint_family_member_3,ING2->Oncogene{Bushman},chr4:184426147-184432249:+,inhibitor_of_growth_family_member_2	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	PIF1--SPG21	2	0	PIF1	1100	chr15:65117768:-	SPG21	17641	chr15:65275931:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PIF1->PIF1_5'-to-3'_DNA_helicase,chr15:65107831-65117867:-,SPG21->chr15:65255362-65282648:-,spastic_paraplegia_21_(autosomal_recessive,_Mast_syndrome)	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	PPCDC--CPLX3	2	0	PPCDC	2354	chr15:75320794:+	CPLX3	16278	chr15:75122471:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PPCDC->chr15:75315896-75409803:+,phosphopantothenoylcysteine_decarboxylase,CPLX3->chr15:75118888-75124141:+,complexin_3	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	18	0	TRUE	ACH-000356
MKN45_STOMACH	SNX13--ZNRF2	2	0	SNX13	1218	chr7:17979907:-	ZNRF2	48749	chr7:30363258:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SNX13->chr7:17830385-17980124:-,sorting_nexin_13,ZNRF2->chr7:30323923-30452118:+,zinc_and_ring_finger_2,_E3_ubiquitin_protein_ligase	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	SOS2--POLE2	2	0	SOS2	11899	chr14:50628200:-	POLE2	36166	chr14:50141145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-,POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TBC1D15--RAB21	2	0	TBC1D15	1105	chr12:72233591:+	RAB21	32073	chr12:72163580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:+:[48788],TBC1D15->TBC1_domain_family_member_15,chr12:72233487-72320629:+,RAB21->RAB21,_member_RAS_oncogene_family,chr12:72148654-72184699:+	MKN45_STOMACH	1	1	0.0211	TRUE	0	1	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TGOLN2--GGCX	2	0	TGOLN2	1509	chr2:85555040:-	GGCX	15042	chr2:85786198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	TGOLN2->chr2:85545147-85555548:-,trans-golgi_network_protein_2,GGCX->chr2:85771846-85788670:-,gamma-glutamyl_carboxylase	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TSC22D2--SERP1	2	0	TSC22D2	3974	chr3:150129095:+	SERP1	28191	chr3:150262285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_INVERSION:+:-:[75563],TSC22D2->TSC22_domain_family_member_2,chr3:150126122-150184218:+,SERP1->chr3:150259781-150321015:-,stress-associated_endoplasmic_reticulum_protein_1	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	URGCP--HP1BP3	2	0	URGCP	1280	chr7:43965731:-	HP1BP3	24903	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	URGCP->chr7:43915493-43966010:-,upregulator_of_cell_proliferation,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	WDR59--CNOT1	2	0	WDR59	3538	chr16:75018862:-	CNOT1	42875	chr16:58633415:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	YWHAE--ABR	2	0	YWHAE	1332	chr17:1303341:-	ABR	26806	chr17:1003975:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	4	0	TRUE	ACH-000356
MKN45_STOMACH	EZH1--BECN1	1	3	EZH1	5653	chr17:40879653:-	BECN1	27719	chr17:40979358:-	ONLY_REF_SPLICE	YES	28	0	0.12	1	0.0106	0.0317	LOCAL_REARRANGEMENT:-:[65081],EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BECN1->beclin_1,chr17:40962152-40985367:-	MKN45_STOMACH	0.12	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TBC1D22A--GRAMD4	1	3	TBC1D22A	10096	chr22:47193517:+	GRAMD4	31919	chr22:47054084:+	ONLY_REF_SPLICE	NO	17	43	0.19	0.09	0.0106	0.0317	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	MKN45_STOMACH	0.09	0.19	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	LIN52--PAPLN	1	2	LIN52	6088	chr14:74567941:+	PAPLN	18744	chr14:73716692:+	ONLY_REF_SPLICE	YES	39	3	0.07	0.5	0.0106	0.0211	LIN52->chr14:74551499-74667936:+,lin-52_DREAM_MuvB_core_complex_component,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	MKN45_STOMACH	0.07	0.5	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	NCKAP5--CXorf22	1	2	NCKAP5	7838	chr2:133887550:-	CXorf22	35571	chrX:35944134:+	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0106	0.0211	NCKAP5->NCK_associated_protein_5,chr2:133429374-134326034:-,CXorf22->chrX:35937851-36008269:+	MKN45_STOMACH	0.3	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	GAB2--B3GNT6	1	1	GAB2	4989	chr11:78029189:-	B3GNT6	25675	chr11:76750596:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0106	0.0106	GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,B3GNT6->Oncogene{Bushman},UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_6,chr11:76745385-76753096:+	MKN45_STOMACH	0.67	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	HTRA1--BTBD16	1	1	HTRA1	1600	chr10:124221640:+	BTBD16	18664	chr10:124049424:+	ONLY_REF_SPLICE	NO	34	1	0.06	0.67	0.0106	0.0106	HTRA1->HtrA_serine_peptidase_1,Oncogene{Bushman},chr10:124221041-124274424:+,BTBD16->BTB_domain_containing_16,chr10:124030821-124097677:+	MKN45_STOMACH	0.06	0.67	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	HTRA1--BTBD16	1	1	HTRA1	1600	chr10:124221640:+	BTBD16	14234	chr10:124034555:+	ONLY_REF_SPLICE	NO	34	0	0.06	1	0.0106	0.0106	HTRA1->HtrA_serine_peptidase_1,Oncogene{Bushman},chr10:124221041-124274424:+,BTBD16->BTB_domain_containing_16,chr10:124030821-124097677:+	MKN45_STOMACH	0.06	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	PXMP2--NUMB	1	1	PXMP2	2662	chr12:133266962:+	NUMB	20775	chr14:73876776:-	ONLY_REF_SPLICE	YES	50	11	0.04	0.15	0.0106	0.0106	PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	MKN45_STOMACH	0.04	0.15	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000356
CL40_LARGE_INTESTINE	DNM2--ACBD3	2	0	DNM2	23425	chr19:10916643:+	ACBD3	49210	chr1:226334522:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	DNM2->chr19:10828755-10944164:+,dynamin_2,ACBD3->acyl-CoA_binding_domain_containing_3,chr1:226332380-226374431:-	CL40_LARGE_INTESTINE	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000798
CL40_LARGE_INTESTINE	RNF169--ANO1	2	0	RNF169	2589	chr11:74500744:+	ANO1	20597	chr11:69949172:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	RNF169->chr11:74459913-74553458:+,ring_finger_protein_169,ANO1->anoctamin_1,chr11:69924408-70035634:+	CL40_LARGE_INTESTINE	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000798
CL40_LARGE_INTESTINE	TCERG1--SLC12A2	2	0	TCERG1	1098	chr5:145826971:+	SLC12A2	35238	chr5:127448506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	TCERG1->chr5:145826874-145891524:+,transcription_elongation_regulator_1,SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2	CL40_LARGE_INTESTINE	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000798
NCIH2009_LUNG	FAM222B--PPP5D1	40	34	FAM222B	8446	chr17:27093604:-	PPP5D1	27575	chr19:46984697:-	ONLY_REF_SPLICE	YES	89	0	0.45	1	0.4919	0.4181	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-	NCIH2009_LUNG	0.45	1	0.91	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	TROVE2--DZIP1	30	63	TROVE2	1355	chr1:193028906:+	DZIP1	34885	chr13:96258313:-	ONLY_REF_SPLICE	YES	277	1	0.25	0.99	0.3689	0.7748	TROVE2->TROVE_domain_family_member_2,chr1:193028552-193060907:+,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	NCIH2009_LUNG	0.25	0.99	1.1437	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	TROVE2--DZIP1	17	67	TROVE2	1801	chr1:193029352:+	DZIP1	34885	chr13:96258313:-	ONLY_REF_SPLICE	YES	269	1	0.24	0.99	0.2091	0.824	TROVE2->TROVE_domain_family_member_2,chr1:193028552-193060907:+,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	NCIH2009_LUNG	0.24	0.99	1.0331	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	C1orf21--C1orf27	25	5	C1orf21	3624	chr1:184476816:+	C1orf27	35710	chr1:186367445:+	ONLY_REF_SPLICE	YES	74	86	0.29	0.26	0.3074	0.0615	{Klijn_CCL:Lung=1},C1orf21->chr1:184356192-184598154:+,chromosome_1_open_reading_frame_21,C1orf27->chr1:186344890-186390510:+,chromosome_1_open_reading_frame_27	NCIH2009_LUNG	0.26	0.29	0.3689	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	TROVE2--DZIP1	11	48	TROVE2	1355	chr1:193028906:+	DZIP1	37010	chr13:96246340:-	ONLY_REF_SPLICE	YES	277	5	0.18	0.92	0.1353	0.5903	TROVE2->TROVE_domain_family_member_2,chr1:193028552-193060907:+,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	NCIH2009_LUNG	0.18	0.92	0.7256	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	TROVE2--DZIP1	5	49	TROVE2	1801	chr1:193029352:+	DZIP1	37010	chr13:96246340:-	ONLY_REF_SPLICE	YES	269	5	0.17	0.92	0.0615	0.6026	TROVE2->TROVE_domain_family_member_2,chr1:193028552-193060907:+,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	NCIH2009_LUNG	0.17	0.92	0.6641	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	FAM222B--PPP5D1	7	40	FAM222B	12214	chr17:27085298:-	PPP5D1	27575	chr19:46984697:-	INCL_NON_REF_SPLICE	YES	75	0	0.39	1	0.0861	0.4919	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-	NCIH2009_LUNG	0.39	1	0.578	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	RP11-368L12.1--ZNF521	15	5	RP11-368L12.1	3549	chr16:63565129:-	ZNF521	23773	chr18:22775208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1845	0.0615	RP11-368L12.1->chr16:63348168-63651950:-,ZNF521->Oncogene{Bushman},chr18:22641890-22932154:-,zinc_finger_protein_521	NCIH2009_LUNG	1	1	0.246	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	FAM222B--PPP5D1	5	36	FAM222B	11703	chr17:27085809:-	PPP5D1	27575	chr19:46984697:-	INCL_NON_REF_SPLICE	YES	69	0	0.37	1	0.0615	0.4427	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-	NCIH2009_LUNG	0.37	1	0.5042	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	FAM222B--PPP5D1	3	40	FAM222B	12224	chr17:27085288:-	PPP5D1	27575	chr19:46984697:-	INCL_NON_REF_SPLICE	YES	73	0	0.37	1	0.0369	0.4919	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-	NCIH2009_LUNG	0.37	1	0.5288	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	EIF5A--MLLT10P1	10	0	EIF5A	1754	chr17:7211071:+	MLLT10P1	9446	chr20:29638051:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.123	0	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,MLLT10P1->chr20:29637799-29638060:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10_pseudogene_1	NCIH2009_LUNG	1	1	0.123	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	GAS6-AS1--TMCO3	9	0	GAS6-AS1	1062	chr13:114518664:+	TMCO3	22257	chr13:114201615:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1107	0	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	NCIH2009_LUNG	1	1	0.1107	TRUE	0	0	0	2	0	TRUE	ACH-000886
NCIH2009_LUNG	CACYBP--UBAC2	6	7	CACYBP	1526	chr1:174968825:+	UBAC2	15445	chr13:99890681:+	ONLY_REF_SPLICE	YES	58	94	0.18	0.12	0.0738	0.0861	CACYBP->calcyclin_binding_protein,chr1:174968300-174980851:+,UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+	NCIH2009_LUNG	0.12	0.18	0.1599	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	CTD-2251F13.1--PRKD1	6	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0738	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2009_LUNG	1	1	0.0738	TRUE	0	3	0	9	3	TRUE	ACH-000886
NCIH2009_LUNG	CFH--GPC6	5	2	CFH	1298	chr1:196621305:+	GPC6	32474	chr13:94482407:+	ONLY_REF_SPLICE	YES	27	31	0.21	0.18	0.0615	0.0246	{Klijn_CCL:Lung=1},CFH->chr1:196621008-196716634:+,complement_factor_H,GPC6->chr13:93879095-95059655:+,glypican_6	NCIH2009_LUNG	0.18	0.21	0.0861	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	TROVE2--DZIP1	1	16	TROVE2	1355	chr1:193028906:+	DZIP1	38153	chr13:96242695:-	ONLY_REF_SPLICE	YES	277	21	0.06	0.45	0.0123	0.1968	TROVE2->TROVE_domain_family_member_2,chr1:193028552-193060907:+,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	NCIH2009_LUNG	0.06	0.45	0.2091	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	ATR--COL21A1	3	1	ATR	3414	chr3:142284963:-	COL21A1	62293	chr6:56035926:-	ONLY_REF_SPLICE	YES	35	2	0.1	0.67	0.0369	0.0123	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,COL21A1->chr6:55921388-56258892:-,collagen_type_XXI_alpha_1	NCIH2009_LUNG	0.1	0.67	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	CAPN15--KCTD5	3	0	CAPN15	2366	chr16:583998:+	KCTD5	21568	chr16:2745936:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0369	0	GTEx&tcga_normals:1/3694=0.03%,CAPN15->calpain_15,chr16:577717-604636:+,KCTD5->chr16:2732476-2759031:+,potassium_channel_tetramerization_domain_containing_5	NCIH2009_LUNG	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	CTD-2251F13.1--PRKD1	3	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0369	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2009_LUNG	1	1	0.0369	TRUE	0	3	0	9	3	TRUE	ACH-000886
NCIH2009_LUNG	NCK1--PPP2R3A	2	2	NCK1	1146	chr3:136581195:+	PPP2R3A	23914	chr3:135789320:+	ONLY_REF_SPLICE	YES	29	19	0.12	0.17	0.0246	0.0246	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha	NCIH2009_LUNG	0.12	0.17	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	ATR--COL21A1	2	1	ATR	5292	chr3:142281074:-	COL21A1	62293	chr6:56035926:-	ONLY_REF_SPLICE	YES	31	2	0.09	0.6	0.0246	0.0123	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,COL21A1->chr6:55921388-56258892:-,collagen_type_XXI_alpha_1	NCIH2009_LUNG	0.09	0.6	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	C17orf76-AS1--NOP58	2	0	C17orf76-AS1	1593	chr17:16342728:+	NOP58	24073	chr2:203160397:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	C17orf76-AS1->chr17:16342136-16381992:+,NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	NCIH2009_LUNG	1	1	0.0246	TRUE	0	0	0	2	0	TRUE	ACH-000886
NCIH2009_LUNG	PLA2G4A--LINC01035	2	0	PLA2G4A	1083	chr1:186798167:+	LINC01035	23896	chr1:189005849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	PLA2G4A->Oncogene{Bushman},chr1:186798085-186958113:+,phospholipase_A2_group_IVA,LINC01035->chr1:188874819-189006393:+,long_intergenic_non-protein_coding_RNA_1035	NCIH2009_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	RP11-368L12.1--ZNF521	1	4	RP11-368L12.1	1354	chr16:63651597:-	ZNF521	23773	chr18:22775208:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0123	0.0492	RP11-368L12.1->chr16:63348168-63651950:-,ZNF521->Oncogene{Bushman},chr18:22641890-22932154:-,zinc_finger_protein_521	NCIH2009_LUNG	0.71	1	0.0615	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	SLC19A1--CCDC127	2	0	SLC19A1	10793	chr21:46945731:-	CCDC127	28889	chr5:206073:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	SLC19A1->Oncogene{Bushman},chr21:46913486-46964325:-,solute_carrier_family_19_member_1,CCDC127->chr5:196986-218330:-,coiled-coil_domain_containing_127	NCIH2009_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	FAM222B--PPP5D1	1	2	FAM222B	3499	chr17:27161311:-	PPP5D1	27575	chr19:46984697:-	ONLY_REF_SPLICE	YES	26	0	0.1	1	0.0123	0.0246	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-	NCIH2009_LUNG	0.1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	NCK1--PPP2R3A	1	2	NCK1	1112	chr3:136581161:+	PPP2R3A	23914	chr3:135789320:+	ONLY_REF_SPLICE	YES	3	19	0.5	0.14	0.0123	0.0246	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha	NCIH2009_LUNG	0.14	0.5	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	NCK1--PPP2R3A	1	2	NCK1	2241	chr3:136586367:+	PPP2R3A	23914	chr3:135789320:+	ONLY_REF_SPLICE	YES	41	19	0.07	0.14	0.0123	0.0246	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha	NCIH2009_LUNG	0.07	0.14	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	COL21A1--RP11-451G4.2	1	1	COL21A1	11020	chr6:56031704:-	RP11-451G4.2	38694	chr3:155008827:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.0123	COL21A1->chr6:55921388-56258892:-,collagen_type_XXI_alpha_1,RP11-451G4.2->chr3:155008018-155011564:-	NCIH2009_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	CTD-2251F13.1--PRKD1	1	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	12223	chr14:30660656:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0123	0.0123	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2009_LUNG	0.5	1	0.0246	TRUE	0	0	0	4	0	TRUE	ACH-000886
NCIH2009_LUNG	FAM222B--PPP5D1	1	1	FAM222B	2441	chr17:27169700:-	PPP5D1	27575	chr19:46984697:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0123	0.0123	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-	NCIH2009_LUNG	0.2	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIN87_STOMACH	RPS11--UNC119	338	0	RPS11	2607	chr19:50001228:+	UNC119	11939	chr17:26874813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9559	0	RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11,UNC119->chr17:26873725-26879686:-,unc-119_lipid_binding_chaperone	NCIN87_STOMACH	1	1	1.9559	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	SUFU--GBF1	68	17	SUFU	3620	chr10:104309863:+	GBF1	25877	chr10:104103808:+	ONLY_REF_SPLICE	YES	38	102	0.69	0.45	0.3935	0.0984	{Klijn_CCL:Stomach=1},SUFU->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SUFU_negative_regulator_of_hedgehog_signaling,chr10:104263744-104393292:+,GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1	NCIN87_STOMACH	0.45	0.69	0.4919	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	OXCT1--CTD-2194L12.2	18	14	OXCT1	14883	chr5:41794105:-	CTD-2194L12.2	26223	chr5:37899770:-	ONLY_REF_SPLICE	YES	87	0	0.27	1	0.1042	0.081	OXCT1->3-oxoacid_CoA-transferase_1,chr5:41730167-41870621:-,CTD-2194L12.2->chr5:37899465-37920971:-	NCIN87_STOMACH	0.27	1	0.1852	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	AP000350.4--PKM	4	11	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	36	1	0.29	0.0231	0.0637	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	NCIN87_STOMACH	0.29	1	0.0868	TRUE	0	0	0	14	0	TRUE	ACH-000427
NCIN87_STOMACH	ALDOA--KRT17	6	0	ALDOA	7476	chr16:30077248:+	KRT17	15303	chr17:39780798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	NCIN87_STOMACH	1	1	0.0347	TRUE	0	0	0	10	0	TRUE	ACH-000427
NCIN87_STOMACH	C17orf76-AS1--RPL23	6	0	C17orf76-AS1	1593	chr17:16342728:+	RPL23	14314	chr17:37008985:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	C17orf76-AS1->chr17:16342136-16381992:+,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	NCIN87_STOMACH	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	AP000350.4--PKM	3	10	AP000350.4	3774	chr22:24236611:-	PKM	7428	chr15:72523509:-	INCL_NON_REF_SPLICE	YES	0	37	1	0.26	0.0174	0.0579	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	NCIN87_STOMACH	0.26	1	0.0753	TRUE	0	0	0	14	0	TRUE	ACH-000427
NCIN87_STOMACH	AL136376.1--RPS28	5	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIN87_STOMACH	1	1	0.0289	TRUE	0	0	0	12	0	TRUE	ACH-000427
NCIN87_STOMACH	RCC1--ANXA2	4	0	RCC1	2175	chr1:28834672:+	ANXA2	35637	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIN87_STOMACH	1	1	0.0231	TRUE	0	0	0	2	0	TRUE	ACH-000427
NCIN87_STOMACH	RCC1--ICA1	4	0	RCC1	2175	chr1:28834672:+	ICA1	32692	chr7:8183602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ICA1->chr7:8152814-8302317:-,islet_cell_autoantigen_1	NCIN87_STOMACH	1	1	0.0231	TRUE	0	6	0	3	2	TRUE	ACH-000427
NCIN87_STOMACH	ALDOA--KRT17	3	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0174	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	NCIN87_STOMACH	1	1	0.0174	TRUE	0	0	0	10	0	TRUE	ACH-000427
NCIN87_STOMACH	BCAR3--EVI5	2	0	BCAR3	2227	chr1:94311123:-	EVI5	50877	chr1:93029294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	CAPN2--SH3YL1	2	0	CAPN2	3855	chr1:223905533:+	SH3YL1	50567	chr2:231191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	CAPN2->calpain_2,chr1:223889295-223963720:+,SH3YL1->SH3_and_SYLF_domain_containing_1,chr2:217730-266398:-	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	CD58--ZXDC	2	0	CD58	1137	chr1:117113525:-	ZXDC	21013	chr3:126160789:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	CD58->CD58_molecule,chr1:117057157-117113661:-,ZXDC->ZXD_family_zinc_finger_C,chr3:126156444-126194762:-	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	PARD3--CUL2	2	0	PARD3	25487	chr10:34606035:-	CUL2	40065	chr10:35360267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,CUL2->chr10:35297479-35379570:-,cullin_2	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	RAB14--MRRF	2	0	RAB14	3046	chr9:123963917:-	MRRF	24003	chr9:125075506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	RAB14->RAB14,_member_RAS_oncogene_family,chr9:123940415-123985292:-,MRRF->chr9:125026882-125085743:+,mitochondrial_ribosome_recycling_factor	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	RCC1--ANXA2	2	0	RCC1	2175	chr1:28834672:+	ANXA2	33306	chr15:60674640:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	SLC25A3--AGO2	2	0	SLC25A3	5397	chr12:98992481:+	AGO2	22071	chr8:141567335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	TAF1--GSPT1	2	0	TAF1	34621	chrX:70680653:+	GSPT1	50444	chr16:11991892:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	TAF1->ArcherDX_panel,FoundationOne_panel,TATA-box_binding_protein_associated_factor_1,chrX:70586114-70752224:+,GSPT1->G1_to_S_phase_transition_1,Oncogene{Bushman},chr16:11961985-12009939:-	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	USP47--YAF2	2	0	USP47	13852	chr11:11944438:+	YAF2	52127	chr12:42555567:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
VMRCRCW_KIDNEY	FAM109A--RP3-473L9.4	36	14	FAM109A	2355	chr12:111803917:-	RP3-473L9.4	13184	chr12:111840942:+	ONLY_REF_SPLICE	YES	11	0	0.82	1	0.6857	0.2667	LOCAL_INVERSION:-:+:[161],FAM109A->chr12:111798455-111806925:-,family_with_sequence_similarity_109_member_A,RP3-473L9.4->chr12:111807086-111841114:+	VMRCRCW_KIDNEY	0.82	1	0.9524	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	DDIT4--DDX17	3	0	DDIT4	2372	chr10:74035049:+	DDX17	20697	chr22:38883930:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	DDIT4->DNA_damage_inducible_transcript_4,chr10:74033678-74035794:+,DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	GPSM1--NDUFB10	3	0	GPSM1	13559	chr9:139249330:+	NDUFB10	20870	chr16:2009555:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	GPSM1->G-protein_signaling_modulator_1,chr9:139221932-139254057:+,NDUFB10->NADH:ubiquinone_oxidoreductase_subunit_B10,chr16:2009509-2011976:+	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	LDLRAD2--CTSD	3	0	LDLRAD2	6263	chr1:22149375:+	CTSD	18168	chr11:1776213:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	LDLRAD2->chr1:22138758-22151714:+,low_density_lipoprotein_receptor_class_A_domain_containing_2,CTSD->cathepsin_D,chr11:1773982-1785222:-	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	SPRED2--TRIM25	3	0	SPRED2	1669	chr2:65659103:-	TRIM25	28965	chr17:54967220:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	SPRED2->chr2:65537985-65659771:-,sprouty_related_EVH1_domain_containing_2,TRIM25->chr17:54965270-54991399:-,tripartite_motif_containing_25	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	TANC1--ACVR1	3	0	TANC1	3335	chr2:159922483:+	ACVR1	57703	chr2:158595082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0571	0	GTEx&tcga_normals:1/3694=0.03%,TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,ACVR1->activin_A_receptor_type_1,chr2:158592958-158732374:-	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	TMEM144--RP11-321N4.5	3	0	TMEM144	10311	chr4:159140542:+	RP11-321N4.5	26974	chr6:86284096:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0571	0	TMEM144->chr4:159122756-159176563:+,transmembrane_protein_144,RP11-321N4.5->chr6:86267696-86324952:-	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	VAT1--STAG3L3	3	0	VAT1	7609	chr17:41168017:-	STAG3L3	12062	chr7:72476388:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	VAT1->chr17:41166622-41177140:-,vesicle_amine_transport_1,STAG3L3->chr7:72440227-72476445:-,stromal_antigen_3-like_3_(pseudogene)	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	ATP8B3--REXO1	2	2	ATP8B3	6342	chr19:1806627:-	REXO1	27949	chr19:1830865:-	ONLY_REF_SPLICE	YES	3	4	0.57	0.5	0.0381	0.0381	LOCAL_REARRANGEMENT:-:[2973],ATP8B3->ATPase_phospholipid_transporting_8B3,chr19:1782074-1812275:-,REXO1->REX1,_RNA_exonuclease_1_homolog,chr19:1815248-1848452:-	VMRCRCW_KIDNEY	0.5	0.57	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	AC005355.2--SNF8	2	0	AC005355.2	1283	chr5:133842525:+	SNF8	7250	chr17:47021337:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	AC005355.2->chr5:133842243-133844920:+,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	MBTD1--TRIM25	2	0	MBTD1	2021	chr17:49336504:-	TRIM25	29258	chr17:54981849:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1,TRIM25->chr17:54965270-54991399:-,tripartite_motif_containing_25	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	RNF19A--YME1L1	2	0	RNF19A	4601	chr8:101322095:-	YME1L1	29123	chr10:27434519:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	RNF19A->chr8:101269288-101348446:-,ring_finger_protein_19A,_RBR_E3_ubiquitin_protein_ligase,YME1L1->YME1_like_1_ATPase,chr10:27399383-27444195:-	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	TTC27--HSPA9	2	0	TTC27	3657	chr2:32859072:+	HSPA9	39503	chr5:137894346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	UHRF1BP1L--GLS	2	0	UHRF1BP1L	1257	chr12:100536370:-	GLS	36198	chr2:191765290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,GLS->chr2:191745553-191830278:+,glutaminase	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	WDR61--ZNF519	2	0	WDR61	7650	chr15:78581961:-	ZNF519	25666	chr18:14101772:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	WDR61->WD_repeat_domain_61,chr15:78570177-78592136:-,ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	ZNF66--B2M	2	0	ZNF66	4542	chr19:20976684:+	B2M	15695	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	ZNF66->chr19:20959110-20991922:+,zinc_finger_protein_66,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	ATP8B3--REXO1	1	1	ATP8B3	6342	chr19:1806627:-	REXO1	29110	chr19:1828630:-	ONLY_REF_SPLICE	NO	3	4	0.4	0.33	0.019	0.019	LOCAL_REARRANGEMENT:-:[2973],ATP8B3->ATPase_phospholipid_transporting_8B3,chr19:1782074-1812275:-,REXO1->REX1,_RNA_exonuclease_1_homolog,chr19:1815248-1848452:-	VMRCRCW_KIDNEY	0.33	0.4	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000484
SNU878_LIVER	AC017048.3--OLA1	12	4	AC017048.3	1470	chr2:177502190:-	OLA1	14354	chr2:175006728:-	ONLY_REF_SPLICE	YES	2	112	0.89	0.12	0.2097	0.0699	AC017048.3->chr2:177494317-177502659:-,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	SNU878_LIVER	0.12	0.89	0.2796	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	ALDH3B1--UNC93B1	7	0	ALDH3B1	3680	chr11:67782929:+	UNC93B1	21290	chr11:67767150:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1223	0	LOCAL_INVERSION:+:-:[3596],ALDH3B1->aldehyde_dehydrogenase_3_family_member_B1,chr11:67776048-67796744:+,UNC93B1->chr11:67758575-67772452:-,unc-93_homolog_B1_(C._elegans)	SNU878_LIVER	1	1	0.1223	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	HNRNPA3--TUBA4A	4	0	HNRNPA3	6062	chr2:178084210:+	TUBA4A	18709	chr2:220115517:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	HNRNPA3->Oncogene{Bushman},chr2:178077291-178088686:+,heterogeneous_nuclear_ribonucleoprotein_A3,TUBA4A->chr2:220114433-220142892:-,tubulin_alpha_4a	SNU878_LIVER	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	MYEOV--RP11-554A11.9	4	0	MYEOV	8645	chr11:69156446:+	RP11-554A11.9	15199	chr11:68926914:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0699	0	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,RP11-554A11.9->chr11:68923378-68927220:+	SNU878_LIVER	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	ADCY3--FLAD1	3	0	ADCY3	19913	chr2:25046169:-	FLAD1	29725	chr1:154960893:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-,FLAD1->chr1:154955814-154965587:+,flavin_adenine_dinucleotide_synthetase_1	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	CRTC2--RPL39	3	0	CRTC2	6281	chr1:153923927:-	RPL39	12222	chrX:118925573:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	CRTC2->CREB_regulated_transcription_coactivator_2,Oncogene{Bushman},chr1:153920145-153931101:-,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	HIPK2--TMEM115	3	0	HIPK2	28988	chr7:139247827:-	TMEM115	33605	chr3:50396936:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	HIPK2->Oncogene{Bushman},chr7:139246316-139477577:-,homeodomain_interacting_protein_kinase_2,TMEM115->chr3:50392180-50397041:-,transmembrane_protein_115	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	PPM1H--ENO1	3	0	PPM1H	14286	chr12:63042357:-	ENO1	29398	chr1:8926544:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	PPM1H->chr12:63037762-63328817:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1H,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	SERPINE2--SPPL2A	3	0	SERPINE2	11415	chr2:224849544:-	SPPL2A	33276	chr15:51018320:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2,SPPL2A->chr15:50999506-51058005:-,signal_peptide_peptidase_like_2A	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	SF3B1--PPA1	3	0	SF3B1	13833	chr2:198267280:-	PPA1	34822	chr10:71969441:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0524	0	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,PPA1->chr10:71962586-71993667:-,pyrophosphatase_(inorganic)_1	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	TRIM2--DNAJB11	3	0	TRIM2	5858	chr4:154143750:+	DNAJB11	42229	chr3:186303400:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2,DNAJB11->DnaJ_heat_shock_protein_family_(Hsp40)_member_B11,chr3:186285192-186315061:+	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	UBA2--SPTAN1	3	0	UBA2	12314	chr19:34943052:+	SPTAN1	36037	chr9:131346750:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2,SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	ZRANB3--SLC25A3	3	0	ZRANB3	2907	chr2:136261899:-	SLC25A3	44569	chr12:98993733:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0524	0	ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3,SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	AEBP2--RP11-377D9.3	2	0	AEBP2	10040	chr12:19667718:+	RP11-377D9.3	22760	chr12:13174948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,RP11-377D9.3->chr12:13153385-13193613:+	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	ANK2--TAX1BP1	2	0	ANK2	1156	chr4:113739420:+	TAX1BP1	85400	chr7:27831625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	ANK2->ankyrin_2,_neuronal,chr4:113739265-114304896:+,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	ANXA4--SAV1	2	0	ANXA4	5066	chr2:69969307:+	SAV1	32474	chr14:51111732:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	ANXA4->annexin_A4,chr2:69871557-70053596:+,SAV1->Oncogene{Bushman},chr14:51098776-51135049:-,salvador_family_WW_domain_containing_protein_1	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	C3orf83--HEATR1	2	0	C3orf83	3980	chr3:12586746:-	HEATR1	14884	chr1:236762924:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	C3orf83->chr3:12556433-12602558:-,HEATR1->HEAT_repeat_containing_1,chr1:236712305-236767804:-	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	CSTA--CCDC58	2	0	CSTA	1115	chr3:122044205:+	CCDC58	14550	chr3:122081874:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_INVERSION:+:-:[17619],CSTA->Oncogene{Bushman},chr3:122044091-122060819:+,cystatin_A,CCDC58->chr3:122078438-122102078:-,coiled-coil_domain_containing_58	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	EIF3C--RBX1	2	0	EIF3C	1271	chr16:28700149:+	RBX1	22870	chr22:41360051:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	EIF3C->Oncogene{Bushman},chr16:28699879-28747051:+,eukaryotic_translation_initiation_factor_3_subunit_C,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	HAVCR1--TXNDC11	2	0	HAVCR1	5961	chr5:156476049:-	TXNDC11	20881	chr16:11794420:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	HAVCR1->chr5:156456424-156486130:-,hepatitis_A_virus_cellular_receptor_1,TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	HDDC2--RBM27	2	0	HDDC2	9625	chr6:125598248:-	RBM27	27867	chr5:145631274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	HDDC2->HD_domain_containing_2,chr6:125541108-125623282:-,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	PDE7B--TBCE	2	0	PDE7B	2385	chr6:136268662:+	TBCE	27309	chr1:235582788:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	PDE7B->chr6:136172834-136516712:+,phosphodiesterase_7B,TBCE->chr1:235530675-235612283:+,tubulin_folding_cofactor_E	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	PPFIBP2--TASP1	2	0	PPFIBP2	17766	chr11:7642258:+	TASP1	54038	chr20:13514788:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	PPFIBP2->PPFIA_binding_protein_2,chr11:7534529-7678358:+,TASP1->chr20:13246709-13619587:-,taspase_1	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	PROSER2--ATP5C1	2	0	PROSER2	1132	chr10:11865469:+	ATP5C1	13799	chr10:7838084:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	PROSER2->chr10:11865338-11914276:+,proline_and_serine_rich_2,ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	PTPRC--BLZF1	2	0	PTPRC	2698	chr1:198661502:+	BLZF1	42010	chr1:169345778:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	PTPRC->chr1:198607801-198726545:+,protein_tyrosine_phosphatase,_receptor_type_C,BLZF1->basic_leucine_zipper_nuclear_factor_1,chr1:169337208-169365778:+	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	SEC22B--PRPF18	2	0	SEC22B	1402	chr1:145096621:+	PRPF18	15349	chr10:13642244:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+,PRPF18->chr10:13628927-13672868:+,pre-mRNA_processing_factor_18	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	SNHG16--ZNF189	2	0	SNHG16	1092	chr17:74553939:+	ZNF189	13355	chr9:104170211:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,ZNF189->chr9:104161155-104172942:+,zinc_finger_protein_189	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	STEAP3--EPT1	2	0	STEAP3	1081	chr2:119981464:+	EPT1	25699	chr2:26607827:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	STEAP3->STEAP3_metalloreductase,chr2:119981384-120023228:+,EPT1->chr2:26531415-26618759:+,ethanolaminephosphotransferase_1	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	SNU878_LIVER	1	1	0.0349	TRUE	1	1	0	8	1	TRUE	ACH-000686
SNU878_LIVER	NCOA3--TASP1	1	1	NCOA3	1163	chr20:46130763:+	TASP1	30579	chr20:13610799:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0175	0.0175	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,TASP1->chr20:13246709-13619587:-,taspase_1	SNU878_LIVER	0.5	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000686
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--AC096579.7	1345	699	PVT1	1202	chr8:128806980:+	AC096579.7	31173	chr2:89157196:-	ONLY_REF_SPLICE	YES	59	1	0.97	1	11.6173	6.0375	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,AC096579.7->chr2:89130700-89165653:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	17.6548	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--AC096579.7	206	842	PVT1	2457	chr8:128808254:+	AC096579.7	31173	chr2:89157196:-	ONLY_REF_SPLICE	YES	76	1	0.93	1	1.7793	7.2727	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,AC096579.7->chr2:89130700-89165653:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	9.052	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--AC096579.7	124	860	PVT1	2520	chr8:128808317:+	AC096579.7	31173	chr2:89157196:-	ONLY_REF_SPLICE	YES	78	1	0.93	1	1.071	7.4281	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,AC096579.7->chr2:89130700-89165653:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	8.4991	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--AC096579.7	73	885	PVT1	6936	chr8:128867565:+	AC096579.7	31173	chr2:89157196:-	ONLY_REF_SPLICE	YES	26	1	0.97	1	0.6305	7.6441	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,AC096579.7->chr2:89130700-89165653:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	8.2746	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FADD--NARS2	19	8	FADD	1583	chr11:70049851:+	NARS2	15357	chr11:78204241:-	ONLY_REF_SPLICE	YES	34	27	0.44	0.5	0.1641	0.0691	FADD->Fas_associated_via_death_domain,chr11:70049269-70053496:+,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.5	0.2332	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	18	2	IGKV2-30	1681	chr2:89544399:-	AC096579.7	9026	chr2:89130914:-	INCL_NON_REF_SPLICE	YES	3	0	0.87	1	0.1555	0.0173	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.1728	TRUE	0	0	0	4	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-29--PVT1	15	0	IGKV2-29	1050	chr2:89534344:-	PVT1	11676	chr8:128902835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1296	0	IGKV2-29->chr2:89533655-89534393:-,immunoglobulin_kappa_variable_2-29_(gene/pseudogene),PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1296	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ETV3--RP11-336K24.5	8	1	ETV3	1159	chr1:157108108:-	RP11-336K24.5	15291	chr1:155971299:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0691	0.0086	ETV3->ETS_variant_3,Oncogene{Bushman},chr1:157090983-157108266:-,RP11-336K24.5->chr1:155961181-155971578:+	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.0777	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF3--CLK4	4	0	ILF3	13013	chr19:10794646:+	CLK4	31136	chr5:178045779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,CLK4->CDC_like_kinase_4,chr5:178029665-178057616:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX13--RALA	2	0	SNX13	1218	chr7:17979907:-	RALA	46938	chr7:39726230:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	SNX13->chr7:17830385-17980124:-,sorting_nexin_13,RALA->Oncogene{Bushman},chr7:39663082-39747723:+,v-ral_simian_leukemia_viral_oncogene_homolog_A_(ras_related)	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000687
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXP1--SMC4	8	5	FOXP1	19737	chr3:71247353:-	SMC4	54620	chr3:160129708:+	ONLY_REF_SPLICE	YES	46	216	0.22	0.06	0.0744	0.0465	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.22	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SNX5	9	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0837	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0837	TRUE	0	5	0	11	0	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	6	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	TRUE	0	6	0	9	2	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATAD2B--ODF2L	2	0	ATAD2B	40421	chr2:23977049:-	ODF2L	49242	chr1:86852769:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,ODF2L->chr1:86814344-86862023:-,outer_dense_fiber_of_sperm_tails_2_like	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C10orf118--STAMBPL1	2	0	C10orf118	1206	chr10:115933774:-	STAMBPL1	31755	chr10:90661413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	C10orf118->chr10:115880621-115933979:-,STAMBPL1->STAM_binding_protein_like_1,chr10:90639491-90734910:+	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SEPT2	2	0	RCC1	2920	chr1:28835417:+	SEPT2	34176	chr2:242287549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	2	0	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFX3--RP11-509J21.1	2	0	RFX3	1258	chr9:3525747:-	RP11-509J21.1	35680	chr9:3546778:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	LOCAL_INVERSION:-:+:[719],RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,RP11-509J21.1->chr9:3526723-3671646:+	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	2	0	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPOP--CYTH1	2	0	SPOP	1302	chr17:47755295:-	CYTH1	29797	chr17:76705814:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,CYTH1->chr17:76670130-76778379:-,cytohesin_1	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000440
HCC515_LUNG	ARHGAP23--PMPCA	68	8	ARHGAP23	1131	chr17:36584792:+	PMPCA	32064	chr9:139306449:+	ONLY_REF_SPLICE	YES	0	32	1	0.7	0.837	0.0985	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,PMPCA->chr9:139305110-139318213:+,peptidase,_mitochondrial_processing_alpha_subunit	HCC515_LUNG	0.7	1	0.9355	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	ELMSAN1--NVL	48	31	ELMSAN1	15172	chr14:74191975:-	NVL	49703	chr1:224455835:-	ONLY_REF_SPLICE	YES	31	87	0.72	0.48	0.5908	0.3816	ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	HCC515_LUNG	0.48	0.72	0.9724	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	EHD1--AP000479.1	30	24	EHD1	6099	chr11:64641893:-	AP000479.1	20005	chr11:56643073:+	ONLY_REF_SPLICE	YES	70	0	0.44	1	0.3693	0.2954	EHD1->EH_domain_containing_1,chr11:64619114-64655768:-,AP000479.1->chr11:56615954-56645554:+	HCC515_LUNG	0.44	1	0.6647	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	TADA2A--RP11-697E22.2	25	3	TADA2A	10206	chr17:35802753:+	RP11-697E22.2	29826	chr17:36044218:+	ONLY_REF_SPLICE	YES	59	0	0.32	1	0.3077	0.0369	TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,RP11-697E22.2->chr17:36002976-36044255:+	HCC515_LUNG	0.32	1	0.3446	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	ALG6--ITGB3BP	20	20	ALG6	3701	chr1:63862268:+	ITGB3BP	30681	chr1:63924044:-	ONLY_REF_SPLICE	YES	75	217	0.35	0.16	0.2462	0.2462	LOCAL_INVERSION:+:-:[2208],ALG6->ALG6,_alpha-1,3-glucosyltransferase,chr1:63833261-63904233:+,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	HCC515_LUNG	0.16	0.35	0.4924	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	ASCC1--MICU1	18	18	ASCC1	17277	chr10:73887840:-	MICU1	44374	chr10:74135630:-	ONLY_REF_SPLICE	YES	125	147	0.22	0.2	0.2216	0.2216	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	HCC515_LUNG	0.2	0.22	0.4432	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	TADA2A--RP11-697E22.2	15	15	TADA2A	10206	chr17:35802753:+	RP11-697E22.2	28359	chr17:36035828:+	ONLY_REF_SPLICE	YES	59	0	0.34	1	0.1846	0.1846	TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,RP11-697E22.2->chr17:36002976-36044255:+	HCC515_LUNG	0.34	1	0.3692	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	ASCC1--MICU1	13	20	ASCC1	17277	chr10:73887840:-	MICU1	43254	chr10:74139341:-	ONLY_REF_SPLICE	YES	125	160	0.21	0.17	0.16	0.2462	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	HCC515_LUNG	0.17	0.21	0.4062	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	CEP128--GTF2A1	13	8	CEP128	13431	chr14:81362062:-	GTF2A1	50047	chr14:81663828:-	ONLY_REF_SPLICE	YES	17	78	0.55	0.21	0.16	0.0985	{Klijn_CCL:Lymphoid=1,Lung=1},CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,GTF2A1->Oncogene{Bushman},chr14:81641796-81687721:-,general_transcription_factor_IIA_subunit_1	HCC515_LUNG	0.21	0.55	0.2585	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	ASCC1--MICU1	9	15	ASCC1	16191	chr10:73892815:-	MICU1	44374	chr10:74135630:-	ONLY_REF_SPLICE	YES	192	147	0.11	0.14	0.1108	0.1846	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	HCC515_LUNG	0.11	0.14	0.2954	TRUE	0	1	0	1	0	TRUE	ACH-000872
HCC515_LUNG	TADA2A--RP11-697E22.2	6	12	TADA2A	9117	chr17:35800763:+	RP11-697E22.2	28359	chr17:36035828:+	ONLY_REF_SPLICE	YES	192	0	0.09	1	0.0739	0.1477	TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,RP11-697E22.2->chr17:36002976-36044255:+	HCC515_LUNG	0.09	1	0.2216	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	EHD1--AP000479.1	2	25	EHD1	6099	chr11:64641893:-	AP000479.1	19132	chr11:56642200:+	ONLY_REF_SPLICE	YES	70	0	0.28	1	0.0246	0.3077	EHD1->EH_domain_containing_1,chr11:64619114-64655768:-,AP000479.1->chr11:56615954-56645554:+	HCC515_LUNG	0.28	1	0.3323	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	TADA2A--RP11-697E22.2	6	5	TADA2A	10206	chr17:35802753:+	RP11-697E22.2	29782	chr17:36044174:+	INCL_NON_REF_SPLICE	YES	59	0	0.16	1	0.0739	0.0615	TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,RP11-697E22.2->chr17:36002976-36044255:+	HCC515_LUNG	0.16	1	0.1354	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	TADA2A--RP11-697E22.2	4	4	TADA2A	9117	chr17:35800763:+	RP11-697E22.2	29782	chr17:36044174:+	INCL_NON_REF_SPLICE	YES	192	0	0.04	1	0.0492	0.0492	TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,RP11-697E22.2->chr17:36002976-36044255:+	HCC515_LUNG	0.04	1	0.0984	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	KRT7--RPL12	4	0	KRT7	5529	chr12:52632508:+	RPL12	17410	chr9:130213654:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0	KRT7->chr12:52626304-52645970:+,keratin_7,RPL12->chr9:130209953-130213684:-,ribosomal_protein_L12	HCC515_LUNG	1	1	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	AL589743.1--CTD-2311B13.1	3	1	AL589743.1	9393	chr14:19680685:+	CTD-2311B13.1	29499	chr14:19517501:+	ONLY_REF_SPLICE	YES	83	0	0.05	1	0.0369	0.0123	AL589743.1->chr14:19650018-19718563:+,CTD-2311B13.1->chr14:19505871-19519837:+	HCC515_LUNG	0.05	1	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	AL589743.1--CTD-2311B13.1	2	1	AL589743.1	1109	chr14:19650126:+	CTD-2311B13.1	29499	chr14:19517501:+	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0246	0.0123	AL589743.1->chr14:19650018-19718563:+,CTD-2311B13.1->chr14:19505871-19519837:+	HCC515_LUNG	0.25	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	AC073283.4--EPCAM	2	0	AC073283.4	1174	chr2:47572040:-	EPCAM	20907	chr2:47606092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	HCC515_LUNG	1	1	0.0246	TRUE	0	5	0	5	2	TRUE	ACH-000872
HCC515_LUNG	AP2A2--TMCO3	2	0	AP2A2	2195	chr11:926088:+	TMCO3	38080	chr13:114149817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	AP2A2->adaptor_related_protein_complex_2_alpha_2_subunit,chr11:924894-1012239:+,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	CTC-228N24.2--CTC-228N24.3	2	0	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HCC515_LUNG	1	1	0.0246	TRUE	0	1	0	12	1	TRUE	ACH-000872
HCC515_LUNG	EXOSC9--CDC45	2	0	EXOSC9	8793	chr4:122734535:+	CDC45	26170	chr22:19494909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	EXOSC9->chr4:122722472-122738176:+,exosome_component_9,CDC45->cell_division_cycle_45,chr22:19466982-19508135:+	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	H3F3A--HSP90AB1	2	0	H3F3A	1961	chr1:226250512:+	HSP90AB1	12273	chr6:44216367:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	H3F3A->ArcherDX_panel,FoundationOne_panel,H3_histone,_family_3A,Oncogene{Bushman},chr1:226249552-226259702:+,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	IFNLR1--B3GNTL1	2	0	IFNLR1	4078	chr1:24495907:-	B3GNTL1	16210	chr17:81006661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	IFNLR1->chr1:24480647-24514449:-,interferon_lambda_receptor_1,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	MAN2B1--MBD1	2	0	MAN2B1	12841	chr19:12760727:-	MBD1	19542	chr18:47807846:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	MAN2B1->chr19:12757325-12777556:-,mannosidase_alpha_class_2B_member_1,MBD1->chr18:47793252-47808144:-,methyl-CpG_binding_domain_protein_1	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	MPP5--FUT8	2	0	MPP5	1425	chr14:67708250:+	FUT8	30463	chr14:65922339:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5,FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	SLC29A2--RBM4	2	0	SLC29A2	6568	chr11:66133407:-	RBM4	23509	chr11:66433327:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	SLC29A2->chr11:66129992-66139685:-,solute_carrier_family_29_member_2,RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	SNHG16--RP3-508I15.14	2	0	SNHG16	4633	chr17:74557480:+	RP3-508I15.14	12382	chr22:39144712:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,RP3-508I15.14->chr22:39135008-39145046:+	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	TAF4--PSMA7	2	0	TAF4	17661	chr20:60572606:-	PSMA7	30022	chr20:60716000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx_FI:{Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Liver=1,Muscle_-_Skeletal=1},{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[70925],TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	HCC515_LUNG	1	1	0.0246	TRUE	1	3	0	4	0	TRUE	ACH-000872
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNRC18--ZNF629	53	12	TNRC18	10018	chr7:5427303:-	ZNF629	42801	chr16:30795836:-	ONLY_REF_SPLICE	YES	16	0	0.8	1	0.7048	0.1596	TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,ZNF629->chr16:30789778-30798523:-,zinc_finger_protein_629	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.8644	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RGS14--NSD1	37	14	RGS14	7190	chr5:176798397:+	NSD1	39690	chr5:176707566:+	ONLY_REF_SPLICE	YES	126	27	0.29	0.65	0.492	0.1862	LOCAL_REARRANGEMENT:+:[57622],RGS14->chr5:176784838-176799602:+,regulator_of_G-protein_signaling_14,NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.65	0.6782	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELMO1--SLCO3A1	33	12	ELMO1	7375	chr7:37382217:-	SLCO3A1	50719	chr15:92638111:+	ONLY_REF_SPLICE	YES	195	112	0.19	0.29	0.4388	0.1596	ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.29	0.5984	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNRC18--MYLPF	26	5	TNRC18	9220	chr7:5428101:-	MYLPF	43276	chr16:30384218:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3457	0.0665	TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.4122	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EBF1--AKAP7	20	8	EBF1	6894	chr5:158500404:-	AKAP7	41505	chr6:131603539:+	ONLY_REF_SPLICE	YES	5	10	0.85	0.74	0.266	0.1064	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,AKAP7->A-kinase_anchoring_protein_7,chr6:131456806-131604675:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.85	0.3724	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATG7--THUMPD3	16	4	ATG7	7783	chr3:11340890:+	THUMPD3	45181	chr3:9416200:+	ONLY_REF_SPLICE	YES	25	37	0.44	0.35	0.2128	0.0532	ATG7->autophagy_related_7,chr3:11313995-11599139:+,THUMPD3->THUMP_domain_containing_3,chr3:9404526-9428475:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.44	0.266	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCEH1--SPATA16	13	4	NCEH1	1372	chr3:172428637:-	SPATA16	15605	chr3:172766884:-	ONLY_REF_SPLICE	YES	14	0	0.55	1	0.1729	0.0532	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,SPATA16->chr3:172607148-172859058:-,spermatogenesis_associated_16	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.2261	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1432--AP000695.4	12	3	KIAA1432	1429	chr9:5629453:+	AP000695.4	36416	chr21:37904269:+	ONLY_REF_SPLICE	YES	15	0	0.5	1	0.1596	0.0399	KIAA1432->chr9:5629025-5776557:+,AP000695.4->chr21:37818029-37904706:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.1995	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EBF1--AKAP7	6	9	EBF1	6894	chr5:158500404:-	AKAP7	40636	chr6:131602670:+	ONLY_REF_SPLICE	YES	5	8	0.75	0.65	0.0798	0.1197	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,AKAP7->A-kinase_anchoring_protein_7,chr6:131456806-131604675:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.75	0.1995	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RGS14--NSD1	3	14	RGS14	7201	chr5:176798408:+	NSD1	39690	chr5:176707566:+	INCL_NON_REF_SPLICE	YES	141	27	0.11	0.39	0.0399	0.1862	LOCAL_REARRANGEMENT:+:[57622],RGS14->chr5:176784838-176799602:+,regulator_of_G-protein_signaling_14,NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.39	0.2261	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CYTH1--USP36	4	0	CYTH1	1096	chr17:76778284:-	USP36	28423	chr17:76834832:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0532	0	LOCAL_REARRANGEMENT:-:[5084],CYTH1->chr17:76670130-76778379:-,cytohesin_1,USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0532	TRUE	0	1	0	3	1	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTB--FSCN1	3	0	ACTB	1071	chr7:5603345:-	FSCN1	14341	chr7:5642888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	LOCAL_INVERSION:-:+:[29024],ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCEH1--SPATA16	2	3	NCEH1	1372	chr3:172428637:-	SPATA16	16751	chr3:172737365:-	ONLY_REF_SPLICE	YES	14	2	0.26	0.71	0.0266	0.0399	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,SPATA16->chr3:172607148-172859058:-,spermatogenesis_associated_16	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.71	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--CMC4	2	0	PROSC	2996	chr8:37623873:+	CMC4	15400	chrX:154292308:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CMC4->C-x(9)-C_motif_containing_4,chrX:154289897-154299637:-	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0266	TRUE	0	1	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZC3H3--EEF1D	2	0	ZC3H3	5747	chr8:144589916:-	EEF1D	28609	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[38244],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0266	TRUE	1	0	0	2	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001432.14--TTC3	1	1	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	3	17	0.4	0.11	0.0133	0.0133	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.4	0.0266	TRUE	0	0	0	15	0	TRUE	ACH-000754
OC314_OVARY	CENPH--CCNB1	75	82	CENPH	8942	chr5:68504186:+	CCNB1	17111	chr5:68470078:+	ONLY_REF_SPLICE	YES	266	1252	0.37	0.11	0.8679	0.949	LOCAL_REARRANGEMENT:+:[11303],CENPH->centromere_protein_H,chr5:68485375-68506184:+,CCNB1->Oncogene{Bushman},chr5:68462837-68474072:+,cyclin_B1	OC314_OVARY	0.11	0.37	1.8169	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	PHTF2--DPYD	45	47	PHTF2	2338	chr7:77469617:+	DPYD	44090	chr1:98060722:-	ONLY_REF_SPLICE	YES	138	7	0.4	0.93	0.5208	0.5439	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	OC314_OVARY	0.4	0.93	1.0647	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	MSH2--RP11-467L13.5	45	45	MSH2	7299	chr2:47643568:+	RP11-467L13.5	26597	chr12:31907695:+	INCL_NON_REF_SPLICE	YES	265	0	0.25	1	0.5208	0.5208	MSH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47630108-47789450:+,mutS_homolog_2,RP11-467L13.5->chr12:31907651-31908055:+	OC314_OVARY	0.25	1	1.0416	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	PHTF2--DPYD	1	47	PHTF2	3440	chr7:77484151:+	DPYD	44090	chr1:98060722:-	ONLY_REF_SPLICE	YES	146	7	0.25	0.87	0.0116	0.5439	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	OC314_OVARY	0.25	0.87	0.5555	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	ZDHHC14--TGFBR3	4	7	ZDHHC14	2134	chr6:157803298:+	TGFBR3	43769	chr1:92187701:-	ONLY_REF_SPLICE	YES	15	3	0.42	0.79	0.0463	0.081	ZDHHC14->Oncogene{Bushman},chr6:157802165-158099178:+,zinc_finger_DHHC-type_containing_14,TGFBR3->Oncogene{Bushman},chr1:92145902-92371892:-,transforming_growth_factor_beta_receptor_3	OC314_OVARY	0.42	0.79	0.1273	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	PODXL2--ADCY5	5	1	PODXL2	7007	chr3:127388045:+	ADCY5	36175	chr3:123019142:-	ONLY_REF_SPLICE	YES	23	1	0.21	0.86	0.0579	0.0116	PODXL2->chr3:127348024-127391652:+,podocalyxin_like_2,ADCY5->adenylate_cyclase_5,chr3:123001143-123168605:-	OC314_OVARY	0.21	0.86	0.0695	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	FNDC3A--RP11-483I13.2	3	5	FNDC3A	3144	chr13:49580425:+	RP11-483I13.2	37418	chr1:108805412:-	ONLY_REF_SPLICE	YES	59	1	0.12	0.89	0.0347	0.0579	FNDC3A->chr13:49550048-49783915:+,fibronectin_type_III_domain_containing_3A,RP11-483I13.2->chr1:108803818-108816311:-	OC314_OVARY	0.12	0.89	0.0926	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	GTF2H3--TMED2	2	0	GTF2H3	1045	chr12:124118419:+	TMED2	19062	chr12:124071294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	LOCAL_REARRANGEMENT:+:[35259],GTF2H3->chr12:124118375-124147153:+,general_transcription_factor_IIH_subunit_3,TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2	OC314_OVARY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	R3HDM2--SH3YL1	2	0	R3HDM2	8772	chr12:57691873:-	SH3YL1	53690	chr2:231191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,SH3YL1->SH3_and_SYLF_domain_containing_1,chr2:217730-266398:-	OC314_OVARY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000962
TT_OESOPHAGUS	FDPS--DCST1	144	106	FDPS	5512	chr1:155287812:+	DCST1	13570	chr1:155011879:+	ONLY_REF_SPLICE	YES	553	7	0.31	0.97	1.8061	1.3295	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,DCST1->DC-STAMP_domain_containing_1,chr1:155006300-155023406:+	TT_OESOPHAGUS	0.31	0.97	3.1356	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	ATL2--HS1BP3	73	50	ATL2	13271	chr2:38536521:-	HS1BP3	24821	chr2:20840940:-	ONLY_REF_SPLICE	YES	253	102	0.33	0.55	0.9156	0.6271	ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HS1BP3->HCLS1_binding_protein_3,chr2:20760208-20850849:-	TT_OESOPHAGUS	0.33	0.55	1.5427	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	SPTBN2--PPP6R3	52	43	SPTBN2	26699	chr11:66453869:-	PPP6R3	47379	chr11:68337216:+	ONLY_REF_SPLICE	YES	328	615	0.22	0.13	0.6522	0.5393	SPTBN2->chr11:66452719-66496697:-,spectrin_beta,_non-erythrocytic_2,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3	TT_OESOPHAGUS	0.13	0.22	1.1915	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	ZNF184--PPP2R5D	33	24	ZNF184	2899	chr6:27435632:-	PPP2R5D	13303	chr6:42974201:+	ONLY_REF_SPLICE	YES	77	225	0.43	0.2	0.4139	0.301	ZNF184->chr6:27418522-27440897:-,zinc_finger_protein_184,PPP2R5D->chr6:42952237-42980080:+,protein_phosphatase_2_regulatory_subunit_B',_delta	TT_OESOPHAGUS	0.2	0.43	0.7149	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	LMTK2--ARPC1B	27	14	LMTK2	1396	chr7:97736592:+	ARPC1B	30792	chr7:98983325:+	ONLY_REF_SPLICE	YES	11	99	0.79	0.29	0.3386	0.1756	LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2,ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+	TT_OESOPHAGUS	0.29	0.79	0.5142	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	NBAS--AC007092.1	25	17	NBAS	32799	chr2:15519726:-	AC007092.1	81765	chr2:59285696:+	ONLY_REF_SPLICE	YES	29	0	0.59	1	0.3136	0.2132	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC007092.1->chr2:58654934-59290901:+	TT_OESOPHAGUS	0.59	1	0.5268	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	RP11-1H15.2--SWAP70	26	13	RP11-1H15.2	1134	chr11:9860823:+	SWAP70	22353	chr11:9769405:+	ONLY_REF_SPLICE	YES	0	182	1	0.18	0.3261	0.163	LOCAL_REARRANGEMENT:+:[86152],RP11-1H15.2->chr11:9860690-9950810:+,SWAP70->Oncogene{Bushman},SWAP_switching_B-cell_complex_70kDa_subunit,chr11:9685624-9774538:+	TT_OESOPHAGUS	0.18	1	0.4891	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	FDPS--DCST1	15	44	FDPS	5512	chr1:155287812:+	DCST1	14652	chr1:155012961:+	ONLY_REF_SPLICE	YES	553	30	0.1	0.66	0.1881	0.5519	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,DCST1->DC-STAMP_domain_containing_1,chr1:155006300-155023406:+	TT_OESOPHAGUS	0.1	0.66	0.74	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	NEMF--SOS2	16	29	NEMF	18819	chr14:50280706:-	SOS2	58231	chr14:50605502:-	ONLY_REF_SPLICE	YES	127	45	0.26	0.5	0.2007	0.3637	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	TT_OESOPHAGUS	0.26	0.5	0.5644	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	HSDL2--SNX30	16	12	HSDL2	12593	chr9:115221857:+	SNX30	19893	chr9:115567056:+	ONLY_REF_SPLICE	YES	22	1	0.56	0.97	0.2007	0.1505	HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2,SNX30->chr9:115513118-115643951:+,sorting_nexin_family_member_30	TT_OESOPHAGUS	0.56	0.97	0.3512	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	NBAS--AC007092.1	15	14	NBAS	32799	chr2:15519726:-	AC007092.1	82801	chr2:59287914:+	ONLY_REF_SPLICE	YES	29	0	0.5	1	0.1881	0.1756	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC007092.1->chr2:58654934-59290901:+	TT_OESOPHAGUS	0.5	1	0.3637	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	SMARCA4--GMEB2	12	11	SMARCA4	1253	chr19:11071850:+	GMEB2	51685	chr20:62229213:-	ONLY_REF_SPLICE	YES	67	67	0.26	0.26	0.1505	0.138	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,GMEB2->chr20:62218955-62258394:-,glucocorticoid_modulatory_element_binding_protein_2	TT_OESOPHAGUS	0.26	0.26	0.2885	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	GCLC--DCUN1D3	12	9	GCLC	1085	chr6:53481684:-	DCUN1D3	27615	chr16:20873965:-	ONLY_REF_SPLICE	YES	158	23	0.12	0.48	0.1505	0.1129	GCLC->chr6:53362139-53481768:-,glutamate-cysteine_ligase_catalytic_subunit,DCUN1D3->chr16:20866247-20911706:-,defective_in_cullin_neddylation_1_domain_containing_3	TT_OESOPHAGUS	0.12	0.48	0.2634	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	ASXL2--PDIA6	11	11	ASXL2	2434	chr2:26068350:-	PDIA6	35039	chr2:10961648:-	INCL_NON_REF_SPLICE	YES	36	0	0.38	1	0.138	0.138	ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,PDIA6->chr2:10923517-10978103:-,protein_disulfide_isomerase_family_A_member_6	TT_OESOPHAGUS	0.38	1	0.276	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	RP11-416O18.1--SOX2-OT	9	4	RP11-416O18.1	10636	chr3:181719155:+	SOX2-OT	57132	chr3:181554245:+	INCL_NON_REF_SPLICE	YES	49	0	0.21	1	0.1129	0.0502	RP11-416O18.1->chr3:181670131-181728466:+,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	TT_OESOPHAGUS	0.21	1	0.1631	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	FDPS--DCST1	1	34	FDPS	3847	chr1:155282186:+	DCST1	13570	chr1:155011879:+	ONLY_REF_SPLICE	NO	660	7	0.05	0.83	0.0125	0.4264	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,DCST1->DC-STAMP_domain_containing_1,chr1:155006300-155023406:+	TT_OESOPHAGUS	0.05	0.83	0.4389	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	NEMF--SOS2	6	12	NEMF	18819	chr14:50280706:-	SOS2	59404	chr14:50600957:-	ONLY_REF_SPLICE	YES	127	38	0.12	0.32	0.0753	0.1505	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	TT_OESOPHAGUS	0.12	0.32	0.2258	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	LINC00511--SLC39A11	6	10	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	24	118	0.4	0.12	0.0753	0.1254	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	TT_OESOPHAGUS	0.12	0.4	0.2007	TRUE	0	5	0	7	4	TRUE	ACH-000561
TT_OESOPHAGUS	C11orf80--PACS1	7	3	C11orf80	4815	chr11:66526567:+	PACS1	29113	chr11:65960957:+	ONLY_REF_SPLICE	YES	163	37	0.06	0.21	0.0878	0.0376	C11orf80->chr11:66511922-66610987:+,chromosome_11_open_reading_frame_80,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	TT_OESOPHAGUS	0.06	0.21	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	LMTK2--ARPC1B	5	11	LMTK2	1390	chr7:97736586:+	ARPC1B	30792	chr7:98983325:+	INCL_NON_REF_SPLICE	YES	11	99	0.59	0.14	0.0627	0.138	LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2,ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+	TT_OESOPHAGUS	0.14	0.59	0.2007	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	LMTK2--ARPC1B	3	16	LMTK2	1396	chr7:97736592:+	ARPC1B	28551	chr7:98974961:+	ONLY_REF_SPLICE	YES	11	33	0.63	0.37	0.0376	0.2007	LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2,ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+	TT_OESOPHAGUS	0.37	0.63	0.2383	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	SETD1A--SRCAP	6	4	SETD1A	14667	chr16:30992085:+	SRCAP	49357	chr16:30753130:+	INCL_NON_REF_SPLICE	YES	57	252	0.15	0.04	0.0753	0.0502	SETD1A->SET_domain_containing_1A,chr16:30968615-30996437:+,SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+	TT_OESOPHAGUS	0.04	0.15	0.1255	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	CEP135--PAICS	6	3	CEP135	6714	chr4:56825932:+	PAICS	36444	chr4:57307829:+	ONLY_REF_SPLICE	YES	6	138	0.6	0.06	0.0753	0.0376	CEP135->centrosomal_protein_135,chr4:56815037-56899529:+,PAICS->chr4:57301907-57327534:+,phosphoribosylaminoimidazole_carboxylase;_phosphoribosylaminoimidazolesuccinocarboxamide_synthase	TT_OESOPHAGUS	0.06	0.6	0.1129	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	CROT--PILRA	4	5	CROT	13120	chr7:87011859:+	PILRA	25758	chr7:99987511:+	ONLY_REF_SPLICE	YES	72	1	0.11	0.9	0.0502	0.0627	CROT->carnitine_O-octanoyltransferase,chr7:86974997-87029111:+,PILRA->chr7:99965153-99997719:+,paired_immunoglobin_like_type_2_receptor_alpha	TT_OESOPHAGUS	0.11	0.9	0.1129	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	LMTK2--ARPC1B	1	16	LMTK2	1396	chr7:97736592:+	ARPC1B	28547	chr7:98974957:+	ONLY_REF_SPLICE	NO	11	33	0.61	0.34	0.0125	0.2007	LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2,ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+	TT_OESOPHAGUS	0.34	0.61	0.2132	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	ASXL2--PDIA6	2	11	ASXL2	2434	chr2:26068350:-	PDIA6	35042	chr2:10961645:-	ONLY_REF_SPLICE	YES	36	0	0.27	1	0.0251	0.138	ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,PDIA6->chr2:10923517-10978103:-,protein_disulfide_isomerase_family_A_member_6	TT_OESOPHAGUS	0.27	1	0.1631	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	CROT--PILRA	4	3	CROT	13120	chr7:87011859:+	PILRA	26977	chr7:99995502:+	ONLY_REF_SPLICE	YES	72	3	0.09	0.7	0.0502	0.0376	CROT->carnitine_O-octanoyltransferase,chr7:86974997-87029111:+,PILRA->chr7:99965153-99997719:+,paired_immunoglobin_like_type_2_receptor_alpha	TT_OESOPHAGUS	0.09	0.7	0.0878	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	LMTK2--ARPC1B	1	15	LMTK2	1396	chr7:97736592:+	ARPC1B	28571	chr7:98974981:+	ONLY_REF_SPLICE	YES	11	33	0.59	0.33	0.0125	0.1881	LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2,ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+	TT_OESOPHAGUS	0.33	0.59	0.2006	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	FNIP1--THSD4	4	1	FNIP1	3450	chr5:131066597:-	THSD4	36419	chr15:71952869:+	ONLY_REF_SPLICE	YES	27	22	0.16	0.19	0.0502	0.0125	FNIP1->Oncogene{Bushman},chr5:130977407-131132710:-,folliculin_interacting_protein_1,THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4	TT_OESOPHAGUS	0.16	0.19	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	CLDN10-AS1--EFNB2	2	5	CLDN10-AS1	2309	chr13:96180746:-	EFNB2	9168	chr13:107165160:-	ONLY_REF_SPLICE	YES	0	80	1	0.08	0.0251	0.0627	CLDN10-AS1->CLDN10_antisense_RNA_1,chr13:96131698-96186164:-,EFNB2->chr13:107142079-107187462:-,ephrin_B2	TT_OESOPHAGUS	0.08	1	0.0878	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	SERPINB7--SERPINB5	3	1	SERPINB7	3542	chr18:61445059:+	SERPINB5	16997	chr18:61151655:+	ONLY_REF_SPLICE	YES	6	81	0.4	0.05	0.0376	0.0125	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,SERPINB7->chr18:61420169-61472604:+,serpin_family_B_member_7,SERPINB5->Oncogene{Bushman},chr18:61143994-61172318:+,serpin_family_B_member_5	TT_OESOPHAGUS	0.05	0.4	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	RPL3--KRT17	3	0	RPL3	3847	chr22:39713548:-	KRT17	11639	chr17:39780814:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	GTEx&tcga_normals:2/3694=0.05%,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,KRT17->chr17:39775689-39781094:-,keratin_17	TT_OESOPHAGUS	1	1	0.0376	TRUE	0	0	0	2	0	TRUE	ACH-000561
TT_OESOPHAGUS	SBF2-AS1--ZNF143	3	0	SBF2-AS1	9012	chr11:9829493:+	ZNF143	25629	chr11:9516193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	SBF2-AS1->SBF2_antisense_RNA_1,chr11:9779839-9832866:+,ZNF143->chr11:9481866-9550071:+,zinc_finger_protein_143	TT_OESOPHAGUS	1	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	ANKRD36C--FBXW9	2	1	ANKRD36C	9637	chr2:96624339:-	FBXW9	70870	chr19:12802268:-	ONLY_REF_SPLICE	YES	5	37	0.38	0.07	0.0251	0.0125	ANKRD36C->ankyrin_repeat_domain_36C,chr2:96514587-96657541:-,FBXW9->F-box_and_WD_repeat_domain_containing_9,chr19:12798867-12807457:-	TT_OESOPHAGUS	0.07	0.38	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	BTBD11--RP11-642P15.1	2	1	BTBD11	2663	chr12:107713852:+	RP11-642P15.1	39085	chr12:104287174:-	ONLY_REF_SPLICE	YES	7	1	0.3	0.75	0.0251	0.0125	BTBD11->BTB_domain_containing_11,chr12:107712190-108053419:+,RP11-642P15.1->chr12:104237527-104323989:-	TT_OESOPHAGUS	0.3	0.75	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	C1orf63--EIF4G3	2	0	C1orf63	8720	chr1:25594231:-	EIF4G3	25991	chr1:21415706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	PPFIBP1--RP11-108K3.1	2	0	PPFIBP1	1935	chr12:27677298:+	RP11-108K3.1	43034	chr15:51570180:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,RP11-108K3.1->chr15:51329685-51586109:+	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	PRIM2--OLFML3	2	0	PRIM2	8956	chr6:57246966:+	OLFML3	26292	chr1:114522954:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,OLFML3->chr1:114522063-114524876:+,olfactomedin_like_3	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	RP11-1379J22.5--UBE2D2	2	0	RP11-1379J22.5	1720	chr5:179085482:+	UBE2D2	10384	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	RP11-1379J22.5->chr5:179084763-179091433:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	5	0	5	2	TRUE	ACH-000561
TT_OESOPHAGUS	SLC35E2B--UBE2D2	2	0	SLC35E2B	9194	chr1:1599766:-	UBE2D2	21139	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	SLC35E2B->chr1:1592939-1624167:-,solute_carrier_family_35_member_E2B,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	TFAP2E--ZER1	2	0	TFAP2E	2631	chr1:36040601:+	ZER1	17921	chr9:131505024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	TFAP2E->chr1:36038971-36060929:+,transcription_factor_AP-2_epsilon,ZER1->chr9:131492065-131534693:-,zyg-11_related_cell_cycle_regulator	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	TPCN2--CCND1	2	0	TPCN2	3530	chr11:68822820:+	CCND1	26801	chr11:69457799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	ANKRD36C--FBXW9	1	1	ANKRD36C	26603	chr2:96583603:-	FBXW9	70870	chr19:12802268:-	ONLY_REF_SPLICE	NO	1	37	0.67	0.05	0.0125	0.0125	ANKRD36C->ankyrin_repeat_domain_36C,chr2:96514587-96657541:-,FBXW9->F-box_and_WD_repeat_domain_containing_9,chr19:12798867-12807457:-	TT_OESOPHAGUS	0.05	0.67	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	ANKRD36C--FBXW9	1	1	ANKRD36C	10668	chr2:96622534:-	FBXW9	70870	chr19:12802268:-	ONLY_REF_SPLICE	YES	3	37	0.4	0.05	0.0125	0.0125	ANKRD36C->ankyrin_repeat_domain_36C,chr2:96514587-96657541:-,FBXW9->F-box_and_WD_repeat_domain_containing_9,chr19:12798867-12807457:-	TT_OESOPHAGUS	0.05	0.4	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	ANKRD36C--FBXW9	1	1	ANKRD36C	25415	chr2:96587355:-	FBXW9	70870	chr19:12802268:-	ONLY_REF_SPLICE	NO	1	37	0.67	0.05	0.0125	0.0125	ANKRD36C->ankyrin_repeat_domain_36C,chr2:96514587-96657541:-,FBXW9->F-box_and_WD_repeat_domain_containing_9,chr19:12798867-12807457:-	TT_OESOPHAGUS	0.05	0.67	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	BTBD11--RP11-642P15.1	1	1	BTBD11	2663	chr12:107713852:+	RP11-642P15.1	41671	chr12:104283418:-	ONLY_REF_SPLICE	NO	7	1	0.22	0.67	0.0125	0.0125	BTBD11->BTB_domain_containing_11,chr12:107712190-108053419:+,RP11-642P15.1->chr12:104237527-104323989:-	TT_OESOPHAGUS	0.22	0.67	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	EHBP1--AC008067.2	1	1	EHBP1	10472	chr2:63058293:+	AC008067.2	46810	chr2:80802410:-	ONLY_REF_SPLICE	NO	45	0	0.04	1	0.0125	0.0125	EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,AC008067.2->chr2:80802238-80845902:-	TT_OESOPHAGUS	0.04	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	FKBP5--DLGAP1	1	1	FKBP5	18286	chr6:35547813:-	DLGAP1	50231	chr18:3680212:-	ONLY_REF_SPLICE	YES	24	3	0.08	0.4	0.0125	0.0125	FKBP5->FK506_binding_protein_5,chr6:35541362-35696360:-,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	TT_OESOPHAGUS	0.08	0.4	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	FKBP5--DLGAP1	1	1	FKBP5	11288	chr6:35554811:-	DLGAP1	50231	chr18:3680212:-	ONLY_REF_SPLICE	YES	12	3	0.14	0.4	0.0125	0.0125	FKBP5->FK506_binding_protein_5,chr6:35541362-35696360:-,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	TT_OESOPHAGUS	0.14	0.4	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
SNU601_STOMACH	CREBL2--RP11-392P7.6	50	14	CREBL2	1361	chr12:12765121:+	RP11-392P7.6	20596	chr12:13132458:+	ONLY_REF_SPLICE	YES	13	7	0.83	0.9	0.4984	0.1395	CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+,RP11-392P7.6->chr12:13080660-13137579:+	SNU601_STOMACH	0.83	0.9	0.6379	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	TRAF3IP2-AS1--FABP7	11	4	TRAF3IP2-AS1	1155	chr6:111804868:+	FABP7	17142	chr6:123101436:+	ONLY_REF_SPLICE	YES	5	0	0.75	1	0.1096	0.0399	TRAF3IP2-AS1->TRAF3IP2_antisense_RNA_1,chr6:111804714-111919505:+,FABP7->chr6:123100620-123105219:+,fatty_acid_binding_protein_7	SNU601_STOMACH	0.75	1	0.1495	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	MXD3--SNTG2	9	3	MXD3	1997	chr5:176738762:-	SNTG2	41123	chr2:1371115:+	ONLY_REF_SPLICE	YES	43	0	0.22	1	0.0897	0.0299	MXD3->MAX_dimerization_protein_3,chr5:176728462-176739758:-,SNTG2->chr2:946554-1371385:+,syntrophin_gamma_2	SNU601_STOMACH	0.22	1	0.1196	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	CREBL2--RP11-392P7.6	5	18	CREBL2	1361	chr12:12765121:+	RP11-392P7.6	20013	chr12:13131875:+	ONLY_REF_SPLICE	YES	13	6	0.64	0.79	0.0498	0.1794	CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+,RP11-392P7.6->chr12:13080660-13137579:+	SNU601_STOMACH	0.64	0.79	0.2292	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	CREBL2--RP11-392P7.6	2	15	CREBL2	1361	chr12:12765121:+	RP11-392P7.6	20503	chr12:13132365:+	ONLY_REF_SPLICE	YES	13	6	0.57	0.74	0.0199	0.1495	CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+,RP11-392P7.6->chr12:13080660-13137579:+	SNU601_STOMACH	0.57	0.74	0.1694	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	FAM172A--KIAA0825	5	3	FAM172A	2315	chr5:93410351:-	KIAA0825	50323	chr5:93489829:-	ONLY_REF_SPLICE	YES	9	0	0.47	1	0.0498	0.0299	LOCAL_REARRANGEMENT:-:[41267],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,KIAA0825->KIAA0825,chr5:93488671-93954309:-	SNU601_STOMACH	0.47	1	0.0797	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	MNT--METTL16	5	0	MNT	5622	chr17:2297337:-	METTL16	31211	chr17:2324198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	LOCAL_REARRANGEMENT:-:[4444],MNT->MAX_network_transcriptional_repressor,chr17:2287354-2304412:-,METTL16->chr17:2308856-2415185:-,methyltransferase_like_16	SNU601_STOMACH	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	ROCK2--NOL10	3	5	ROCK2	2753	chr2:11484122:-	NOL10	39234	chr2:10824738:-	ONLY_REF_SPLICE	YES	12	87	0.4	0.08	0.0299	0.0498	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,NOL10->chr2:10710892-10830101:-,nucleolar_protein_10	SNU601_STOMACH	0.08	0.4	0.0797	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	MECOM--GNAS	4	0	MECOM	1283	chr3:169381124:-	GNAS	51411	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU601_STOMACH	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU601_STOMACH	1	1	0.0299	TRUE	0	8	0	10	8	TRUE	ACH-000736
SNU601_STOMACH	FAM208B--GDI2	3	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	SNU601_STOMACH	1	1	0.0299	TRUE	0	6	0	16	3	TRUE	ACH-000736
SNU601_STOMACH	TMEM242--GLS	3	0	TMEM242	3035	chr6:157739814:-	GLS	32610	chr2:191818291:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	TMEM242->chr6:157710418-157744633:-,transmembrane_protein_242,GLS->chr2:191745553-191830278:+,glutaminase	SNU601_STOMACH	1	1	0.0299	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	ZMYND8--GNAS	3	0	ZMYND8	6534	chr20:45976600:-	GNAS	53879	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU601_STOMACH	1	1	0.0299	TRUE	0	0	0	2	0	TRUE	ACH-000736
SNU601_STOMACH	TRAF3IP2-AS1--FABP7	1	5	TRAF3IP2-AS1	2351	chr6:111806064:+	FABP7	17142	chr6:123101436:+	ONLY_REF_SPLICE	YES	13	0	0.32	1	0.01	0.0498	TRAF3IP2-AS1->TRAF3IP2_antisense_RNA_1,chr6:111804714-111919505:+,FABP7->chr6:123100620-123105219:+,fatty_acid_binding_protein_7	SNU601_STOMACH	0.32	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	C17orf76-AS1--ABHD17C	2	0	C17orf76-AS1	1593	chr17:16342728:+	ABHD17C	19313	chr15:81041854:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	C17orf76-AS1->chr17:16342136-16381992:+,ABHD17C->abhydrolase_domain_containing_17C,chr15:80972025-81047962:+	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	CDK6--PRPF39	2	0	CDK6	1117	chr7:92465792:-	PRPF39	33821	chr14:45581521:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6,PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	HNRNPM--ELAVL1	2	0	HNRNPM	1345	chr19:8509995:+	ELAVL1	24831	chr19:8056715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	HGNC_GENEFAM,HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	3	0	TRUE	ACH-000736
SNU601_STOMACH	IMMP1L--ZFP91	2	0	IMMP1L	1127	chr11:31531066:-	ZFP91	21287	chr11:58377303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1,ZFP91->ZFP91_zinc_finger_protein,chr11:58346584-58388515:+	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	LYZ--CCT2	2	0	LYZ	3682	chr12:69746078:+	CCT2	12770	chr12:69983265:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LYZ->chr12:69742121-69748014:+,lysozyme,CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+	SNU601_STOMACH	1	1	0.0199	TRUE	1	6	0	5	1	TRUE	ACH-000736
SNU601_STOMACH	NELFB--TUBB4B	2	0	NELFB	7651	chr9:140161798:+	TUBB4B	14401	chr9:140136948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LOCAL_REARRANGEMENT:+:[11466],NELFB->chr9:140149625-140167998:+,negative_elongation_factor_complex_member_B,TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	PHIP--TOP1	2	0	PHIP	1789	chr6:79787165:-	TOP1	47803	chr20:39706222:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	PHIP->Oncogene{Bushman},chr6:79645584-79787953:-,pleckstrin_homology_domain_interacting_protein,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	PTBP1--MISP	2	0	PTBP1	3369	chr19:799443:+	MISP	20371	chr19:761625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LOCAL_REARRANGEMENT:+:[32756],PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1,MISP->chr19:751126-764319:+,mitotic_spindle_positioning	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	SH3KBP1--MYRFL	2	0	SH3KBP1	13083	chrX:19688980:-	MYRFL	40657	chr12:70284751:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-,MYRFL->chr12:70219084-70352877:+,myelin_regulatory_factor-like	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCAR1--MZF1	183	85	CCAR1	2566	chr10:70482334:+	MZF1	30929	chr19:59082796:-	ONLY_REF_SPLICE	YES	106	12	0.72	0.96	2.1744	1.01	CCAR1->cell_division_cycle_and_apoptosis_regulator_1,chr10:70480769-70552134:+,MZF1->chr19:59073298-59084942:-,myeloid_zinc_finger_1	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.96	3.1844	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC27--GPHN	101	68	CDC27	5307	chr17:45247283:-	GPHN	49188	chr14:67555700:+	ONLY_REF_SPLICE	YES	63	50	0.73	0.77	1.2001	0.808	{Klijn_CCL:Lymphoid=1},CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.77	2.0081	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IFITM9P	88	73	IGH@	95370	chr14:106329408:-	IFITM9P	131843	chr11:69071233:-	INCL_NON_REF_SPLICE	YES	2657	0	0.06	1	1.0456	0.8674	IGH@->Oncogene{Bushman},IFITM9P->chr11:69070879-69071274:-,interferon_induced_transmembrane_protein_9_pseudogene	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	1.913	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JAKMIP3--INPP5A	43	8	JAKMIP3	13248	chr10:133959084:+	INPP5A	32350	chr10:134421419:+	ONLY_REF_SPLICE	YES	75	2	0.4	0.96	0.5109	0.0951	{Klijn_CCL:Lymphoid=1},JAKMIP3->Janus_kinase_and_microtubule_interacting_protein_3,chr10:133918175-133998313:+,INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.96	0.606	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPBL--WDR70	36	13	NIPBL	1420	chr5:36877280:+	WDR70	54689	chr5:37379591:+	ONLY_REF_SPLICE	YES	14	13	0.78	0.79	0.4277	0.1545	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.79	0.5822	TRUE	0	2	0	2	1	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC27--GPHN	25	23	CDC27	2753	chr17:45258928:-	GPHN	49188	chr14:67555700:+	ONLY_REF_SPLICE	YES	172	50	0.22	0.49	0.297	0.2733	{Klijn_CCL:Lymphoid=1},CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.49	0.5703	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TANGO6--DUS2	23	4	TANGO6	6484	chr16:68901123:+	DUS2	40755	chr16:68087467:+	ONLY_REF_SPLICE	YES	8	36	0.77	0.43	0.2733	0.0475	TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,DUS2->chr16:68021649-68113223:+,dihydrouridine_synthase_2	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.77	0.3208	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPECC1L--RP11-65J3.3	21	5	SPECC1L	1166	chr22:24666951:+	RP11-65J3.3	31588	chr9:132193175:-	INCL_NON_REF_SPLICE	YES	54	2	0.33	0.93	0.2495	0.0594	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,RP11-65J3.3->chr9:132192931-132213701:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.93	0.3089	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WASH3P--LRRC8B	15	8	WASH3P	7635	chr15:102515368:+	LRRC8B	20006	chr1:90049208:+	INCL_NON_REF_SPLICE	YES	113	9	0.17	0.72	0.1782	0.0951	WASH3P->WAS_protein_family_homolog_3_pseudogene,chr15:102501356-102516768:+,LRRC8B->chr1:89990395-90063423:+,leucine-rich_repeat_containing_8_family_member_B	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.72	0.2733	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	2	50	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	9	0	0.85	1	0.0238	0.5941	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.6179	TRUE	0	0	0	12	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPECC1L--RP11-65J3.3	8	6	SPECC1L	2270	chr22:24672771:+	RP11-65J3.3	31588	chr9:132193175:-	INCL_NON_REF_SPLICE	YES	58	2	0.19	0.88	0.0951	0.0713	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,RP11-65J3.3->chr9:132192931-132213701:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.88	0.1664	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	1	32	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	NO	6	5	0.85	0.87	0.0119	0.3802	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.87	0.3921	TRUE	0	0	0	11	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WASH3P--LRRC8B	7	8	WASH3P	8462	chr15:102516195:+	LRRC8B	20006	chr1:90049208:+	INCL_NON_REF_SPLICE	YES	180	9	0.08	0.62	0.0832	0.0951	WASH3P->WAS_protein_family_homolog_3_pseudogene,chr15:102501356-102516768:+,LRRC8B->chr1:89990395-90063423:+,leucine-rich_repeat_containing_8_family_member_B	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.62	0.1783	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--CARD8	8	0	TXNDC5	11039	chr6:7886194:-	CARD8	39956	chr19:48707500:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0951	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMC5-AS1--APBA1	7	3	SMC5-AS1	1952	chr9:72872831:-	APBA1	19630	chr9:72064712:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0832	0.0356	SMC5-AS1->SMC5_antisense_RNA_1_(head_to_head),chr9:72808913-72873782:-,APBA1->amyloid_beta_precursor_protein_binding_family_A_member_1,chr9:72042446-72287222:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1188	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND1A--CLIP1	7	2	DENND1A	6804	chr9:126519982:-	CLIP1	47383	chr12:122865105:-	ONLY_REF_SPLICE	YES	43	13	0.17	0.41	0.0832	0.0238	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.41	0.107	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CECR7--PSPC1	7	0	CECR7	1775	chr22:17518234:+	PSPC1	24067	chr13:20251963:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0832	0	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	2	15	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	6	49	0.74	0.26	0.0238	0.1782	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.74	0.202	TRUE	0	0	0	13	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	1	16	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	2	5	0.89	0.77	0.0119	0.1901	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.89	0.202	TRUE	0	0	0	16	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HK2--TET3	4	4	HK2	3521	chr2:75081582:+	TET3	28889	chr2:74300676:+	ONLY_REF_SPLICE	YES	36	4	0.18	0.67	0.0475	0.0475	{Klijn_CCL:Lymphoid=1},HK2->chr2:75061108-75120486:+,hexokinase_2,TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.67	0.095	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A1--IFT80	4	3	SLC38A1	2153	chr12:46662648:-	IFT80	33739	chr3:160102434:-	ONLY_REF_SPLICE	YES	193	14	0.04	0.33	0.0475	0.0356	SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1,IFT80->chr3:159974774-160117668:-,intraflagellar_transport_80	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.33	0.0831	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV1--CNTN4	3	4	REV1	3576	chr2:100078958:-	CNTN4	46395	chr3:2908436:+	ONLY_REF_SPLICE	YES	30	0	0.19	1	0.0356	0.0475	REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-,CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0831	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SERPINI1--PDCD10	4	0	SERPINI1	1581	chr3:167453611:+	PDCD10	19277	chr3:167438061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0475	0	LOCAL_INVERSION:+:-:[304],SERPINI1->chr3:167453031-167543356:+,serpin_family_I_member_1,PDCD10->chr3:167401086-167452727:-,programmed_cell_death_10	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCRN3--HYDIN	3	1	SCRN3	8341	chr2:175274953:+	HYDIN	51889	chr16:71026113:-	ONLY_REF_SPLICE	YES	19	0	0.17	1	0.0356	0.0119	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0475	TRUE	0	0	0	3	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TANGO6--DUS2	3	1	TANGO6	6425	chr16:68901064:+	DUS2	40755	chr16:68087467:+	INCL_NON_REF_SPLICE	YES	8	36	0.33	0.1	0.0356	0.0119	TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,DUS2->chr16:68021649-68113223:+,dihydrouridine_synthase_2	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.33	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC88C--TTC7B	3	0	CCDC88C	20377	chr14:91779424:-	TTC7B	76454	chr14:91007933:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	CCDC88C->chr14:91737667-91884188:-,coiled-coil_domain_containing_88C,TTC7B->chr14:91006932-91282823:-,tetratricopeptide_repeat_domain_7B	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	3	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	TRUE	0	6	0	9	2	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--CARD8	3	0	TXNDC5	11039	chr6:7886194:-	CARD8	38819	chr19:48709777:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	1	7	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	49	0.8	0.14	0.0119	0.0832	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.8	0.0951	TRUE	0	0	0	13	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPBL--WDR70	1	6	NIPBL	1420	chr5:36877280:+	WDR70	55755	chr5:37381704:+	ONLY_REF_SPLICE	YES	14	154	0.33	0.04	0.0119	0.0713	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.33	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLASP1--XIRP2	2	1	CLASP1	2696	chr2:122363277:-	XIRP2	64477	chr2:168067245:+	ONLY_REF_SPLICE	YES	25	0	0.11	1	0.0238	0.0119	CLASP1->chr2:122095352-122407163:-,cytoplasmic_linker_associated_protein_1,XIRP2->chr2:167744997-168116263:+,xin_actin_binding_repeat_containing_2	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MINK1--NFATC3	2	0	MINK1	1253	chr17:4736935:+	NFATC3	31880	chr16:68200746:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1,NFATC3->Oncogene{Bushman},chr16:68118654-68263162:+,nuclear_factor_of_activated_T-cells_3	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MZB1--UBE2D2	2	0	MZB1	1402	chr5:138725369:-	UBE2D2	10027	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	MZB1->chr5:138723169-138725770:-,marginal_zone_B_and_B1_cell_specific_protein,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	TRUE	0	0	0	2	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCRN3--HYDIN	2	0	SCRN3	8341	chr2:175274953:+	HYDIN	52703	chr16:71025299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	TRUE	0	0	0	3	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCRN3--HYDIN	2	0	SCRN3	8341	chr2:175274953:+	HYDIN	53782	chr16:71022415:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	TRUE	0	0	0	3	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D25--SLC38A2	2	0	TBC1D25	2622	chrX:48399830:+	SLC38A2	17698	chr12:46757786:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	TBC1D25->TBC1_domain_family_member_25,chrX:48397845-48420997:+,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF207--SNHG14	2	0	ZNF207	12479	chr17:30696801:+	SNHG14	65802	chr15:25336737:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	ZNF207->chr17:30677136-30708905:+,zinc_finger_protein_207,SNHG14->chr15:25223730-25664609:+,small_nucleolar_RNA_host_gene_14	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A1--MTUS2-AS2	1	3	SLC7A1	3441	chr13:30127898:-	MTUS2-AS2	25337	chr13:29814264:-	ONLY_REF_SPLICE	YES	15	1	0.21	0.8	0.0119	0.0356	SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1,MTUS2-AS2->MTUS2_antisense_RNA_2,chr13:29813516-29824691:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.8	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A1--MTUS2-AS2	1	3	SLC7A1	3441	chr13:30127898:-	MTUS2-AS2	24167	chr13:29816835:-	ONLY_REF_SPLICE	YES	15	2	0.21	0.67	0.0119	0.0356	SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1,MTUS2-AS2->MTUS2_antisense_RNA_2,chr13:29813516-29824691:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.67	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000380
SKMEL28_SKIN	ZBTB8OS--YARS	179	31	ZBTB8OS	1471	chr1:33116034:-	YARS	25839	chr1:33246746:-	ONLY_REF_SPLICE	YES	54	158	0.8	0.57	2.2052	0.3819	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	SKMEL28_SKIN	0.57	0.8	2.5871	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	ZNF236--VAPA	131	10	ZNF236	1056	chr18:74534618:+	VAPA	54142	chr18:9950392:+	ONLY_REF_SPLICE	YES	0	184	1	0.43	1.6139	0.1232	ZNF236->chr18:74534563-74682683:+,zinc_finger_protein_236,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	SKMEL28_SKIN	0.43	1	1.7371	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	ZBTB8OS--YARS	51	33	ZBTB8OS	1475	chr1:33116030:-	YARS	25839	chr1:33246746:-	ONLY_REF_SPLICE	YES	83	158	0.5	0.35	0.6283	0.4066	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	SKMEL28_SKIN	0.35	0.5	1.0349	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	ZBTB8OS--YARS	33	49	ZBTB8OS	1502	chr1:33116003:-	YARS	25839	chr1:33246746:-	ONLY_REF_SPLICE	YES	100	158	0.45	0.34	0.4066	0.6037	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	SKMEL28_SKIN	0.34	0.45	1.0103	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	EPS15--RASSF3	24	3	EPS15	1130	chr1:51984871:-	RASSF3	40830	chr12:65078567:+	ONLY_REF_SPLICE	YES	9	44	0.75	0.38	0.2957	0.037	{Klijn_CCL:Skin=1},EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+	SKMEL28_SKIN	0.38	0.75	0.3327	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	BLCAP--SRC	20	9	BLCAP	1139	chr20:36156195:-	SRC	18119	chr20:35993607:+	ONLY_REF_SPLICE	YES	54	57	0.35	0.34	0.2464	0.1109	LOCAL_INVERSION:-:+:[86421],BLCAP->Oncogene{Bushman},bladder_cancer_associated_protein,chr20:36120874-36156333:-,SRC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,SRC_proto-oncogene,_non-receptor_tyrosine_kinase,chr20:35973088-36034453:+	SKMEL28_SKIN	0.34	0.35	0.3573	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MRPS35--STK38L	17	8	MRPS35	4453	chr12:27872801:+	STK38L	18291	chr12:27450643:+	ONLY_REF_SPLICE	YES	151	6	0.14	0.81	0.2094	0.0986	{Klijn_CCL:Skin=1},MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	SKMEL28_SKIN	0.14	0.81	0.308	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	DDX27--CEP250	8	5	DDX27	8675	chr20:47846886:+	CEP250	30207	chr20:34057715:+	ONLY_REF_SPLICE	YES	265	23	0.05	0.36	0.0986	0.0616	DDX27->DEAD-box_helicase_27,chr20:47835884-47860614:+,CEP250->centrosomal_protein_250,chr20:34042985-34099804:+	SKMEL28_SKIN	0.05	0.36	0.1602	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	GAB2--PRCP	8	2	GAB2	1703	chr11:78128692:-	PRCP	29137	chr11:82571159:-	ONLY_REF_SPLICE	YES	19	163	0.34	0.06	0.0986	0.0246	GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,PRCP->chr11:82534544-82681626:-,prolylcarboxypeptidase	SKMEL28_SKIN	0.06	0.34	0.1232	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	FRMD4B--FAM19A4	6	2	FRMD4B	3925	chr3:69481785:-	FAM19A4	50540	chr3:68802169:-	ONLY_REF_SPLICE	YES	141	0	0.05	1	0.0739	0.0246	FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-,FAM19A4->chr3:68780917-68981761:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A4	SKMEL28_SKIN	0.05	1	0.0985	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	ZBTB8OS--YARS	3	10	ZBTB8OS	1463	chr1:33116042:-	YARS	25839	chr1:33246746:-	INCL_NON_REF_SPLICE	YES	30	158	0.3	0.08	0.037	0.1232	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	SKMEL28_SKIN	0.08	0.3	0.1602	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	ZNF236--VAPA	2	10	ZNF236	1056	chr18:74534618:+	VAPA	50206	chr18:9944921:+	ONLY_REF_SPLICE	YES	0	199	1	0.06	0.0246	0.1232	ZNF236->chr18:74534563-74682683:+,zinc_finger_protein_236,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	SKMEL28_SKIN	0.06	1	0.1478	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	CCNL2--SSU72	4	0	CCNL2	2096	chr1:1333613:-	SSU72	21649	chr1:1480382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	CCNL2->chr1:1321091-1334708:-,cyclin_L2,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SKMEL28_SKIN	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	FOXK1--AC007091.1	4	0	FOXK1	5362	chr7:4722499:+	AC007091.1	31246	chr7:19615910:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	FOXK1->chr7:4683388-4811074:+,forkhead_box_K1,AC007091.1->chr7:19393157-19618229:+	SKMEL28_SKIN	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	RP11-153F1.1--RSBN1L	4	0	RP11-153F1.1	1088	chr1:104068018:-	RSBN1L	14980	chr7:77394812:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	RP11-153F1.1->chr1:103960701-104068105:-,RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like	SKMEL28_SKIN	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	NPHP4--CERS6	3	2	NPHP4	5785	chr1:6027359:-	CERS6	44441	chr2:169487495:+	ONLY_REF_SPLICE	YES	26	13	0.16	0.28	0.037	0.0246	NPHP4->chr1:5922871-6052533:-,nephronophthisis_4,CERS6->ceramide_synthase_6,chr2:169312372-169631644:+	SKMEL28_SKIN	0.16	0.28	0.0616	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MRPS35--STK38L	1	9	MRPS35	4453	chr12:27872801:+	STK38L	17611	chr12:27449963:+	ONLY_REF_SPLICE	YES	151	5	0.06	0.67	0.0123	0.1109	{Klijn_CCL:Skin=1},MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	SKMEL28_SKIN	0.06	0.67	0.1232	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	TMEM164--GLMN	3	1	TMEM164	7153	chrX:109388104:+	GLMN	34210	chr1:92712701:-	ONLY_REF_SPLICE	YES	44	23	0.08	0.15	0.037	0.0123	TMEM164->chrX:109245859-109425962:+,transmembrane_protein_164,GLMN->Oncogene{Bushman},chr1:92711959-92764544:-,glomulin,_FKBP_associated_protein	SKMEL28_SKIN	0.08	0.15	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MAPK8IP1--SBF2	2	4	MAPK8IP1	1271	chr11:45907472:+	SBF2	17003	chr11:10064528:-	ONLY_REF_SPLICE	YES	0	4	1	0.6	0.0246	0.0493	MAPK8IP1->chr11:45907202-45928016:+,mitogen-activated_protein_kinase_8_interacting_protein_1,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	SKMEL28_SKIN	0.6	1	0.0739	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	AFF4--HSPA4	2	0	AFF4	1376	chr5:132298951:-	HSPA4	42466	chr5:132422474:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[88328],AFF4->AF4/FMR2_family_member_4,Oncogene{Bushman},chr5:132211071-132299326:-,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	SKMEL28_SKIN	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	C22orf29--DGCR2	2	0	C22orf29	1454	chr22:19841966:-	DGCR2	19904	chr22:19044675:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	C22orf29->chr22:19833661-19842419:-,chromosome_22_open_reading_frame_29,DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-	SKMEL28_SKIN	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	RP3-510D11.1--GNAS	2	0	RP3-510D11.1	3450	chr1:9242066:-	GNAS	22287	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	RP3-510D11.1->chr1:9242066-9262678:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKMEL28_SKIN	1	1	0.0246	TRUE	0	0	0	2	0	TRUE	ACH-000615
SKMEL28_SKIN	TYR--MXI1	2	0	TYR	3538	chr11:88924586:+	MXI1	17518	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	TYR->chr11:88910620-89028927:+,tyrosinase,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	SKMEL28_SKIN	1	1	0.0246	TRUE	0	4	0	4	0	TRUE	ACH-000615
SKMEL28_SKIN	ZBTB8OS--YARS	2	0	ZBTB8OS	1475	chr1:33116030:-	YARS	28603	chr1:33241692:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	SKMEL28_SKIN	1	1	0.0246	TRUE	0	1	0	1	1	TRUE	ACH-000615
SKMEL28_SKIN	ZNF704--NCL	2	0	ZNF704	3480	chr8:81733609:-	NCL	39069	chr2:232323836:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704,NCL->chr2:232318242-232348352:-,nucleolin	SKMEL28_SKIN	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	NPHP4--CERS6	1	1	NPHP4	5785	chr1:6027359:-	CERS6	45499	chr2:169547544:+	ONLY_REF_SPLICE	NO	26	11	0.07	0.15	0.0123	0.0123	NPHP4->chr1:5922871-6052533:-,nephronophthisis_4,CERS6->ceramide_synthase_6,chr2:169312372-169631644:+	SKMEL28_SKIN	0.07	0.15	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000615
MDAMB453_BREAST	RGL2--PTMA	157	0	RGL2	1870	chr6:33266232:-	PTMA	16689	chr2:232576651:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.4813	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	2.4813	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MECP2--TMLHE	101	107	MECP2	3066	chrX:153357642:-	TMLHE	28468	chrX:154754293:-	ONLY_REF_SPLICE	YES	155	94	0.57	0.69	1.5963	1.6911	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon	MDAMB453_BREAST	0.57	0.69	3.2874	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MECP2--TMLHE	108	25	MECP2	1152	chrX:153363061:-	TMLHE	28468	chrX:154754293:-	ONLY_REF_SPLICE	YES	20	94	0.87	0.59	1.7069	0.3951	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon	MDAMB453_BREAST	0.59	0.87	2.102	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RP11-453F18__B.1--SART1	41	14	RP11-453F18__B.1	7381	chrX:130917915:-	SART1	20266	chr11:65731545:+	ONLY_REF_SPLICE	YES	13	83	0.81	0.4	0.648	0.2213	RP11-453F18__B.1->chrX:130836678-130964671:-,SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1	MDAMB453_BREAST	0.4	0.81	0.8693	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	FOXP1--EIF4E3	35	28	FOXP1	2824	chr3:71630700:-	EIF4E3	51235	chr3:71777774:-	ONLY_REF_SPLICE	YES	3	1	0.95	0.98	0.5532	0.4425	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:3],LOCAL_REARRANGEMENT:-:[91427],FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,EIF4E3->chr3:71724567-71803924:-,eukaryotic_translation_initiation_factor_4E_family_member_3	MDAMB453_BREAST	0.95	0.98	0.9957	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	32	0	RGL2	1870	chr6:33266232:-	PTMA	16114	chr2:232576076:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5057	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.5057	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	UNK--ITGB4	19	47	UNK	16981	chr17:73819501:+	ITGB4	32465	chr17:73732607:+	INCL_NON_REF_SPLICE	YES	74	30	0.47	0.69	0.3003	0.7428	LOCAL_REARRANGEMENT:+:[26782],UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	MDAMB453_BREAST	0.47	0.69	1.0431	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	SPSB2--NOP2	25	9	SPSB2	8223	chr12:6980121:-	NOP2	14897	chr12:6673414:-	INCL_NON_REF_SPLICE	YES	0	118	1	0.22	0.3951	0.1422	SPSB2->chr12:6980099-6998522:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_2,NOP2->NOP2_nucleolar_protein,chr12:6666029-6677857:-	MDAMB453_BREAST	0.22	1	0.5373	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	TCF12--NKAIN2	22	14	TCF12	13432	chr15:57458664:+	NKAIN2	52379	chr6:125139533:+	ONLY_REF_SPLICE	YES	63	0	0.36	1	0.3477	0.2213	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,NKAIN2->Na+/K+_transporting_ATPase_interacting_2,Oncogene{Bushman},chr6:124125286-125146803:+	MDAMB453_BREAST	0.36	1	0.569	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	FOXP1--EIF4E3	18	16	FOXP1	2824	chr3:71630700:-	EIF4E3	53567	chr3:71759635:-	ONLY_REF_SPLICE	YES	3	28	0.92	0.55	0.2845	0.2529	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:3],LOCAL_REARRANGEMENT:-:[91427],FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,EIF4E3->chr3:71724567-71803924:-,eukaryotic_translation_initiation_factor_4E_family_member_3	MDAMB453_BREAST	0.55	0.92	0.5374	TRUE	0	1	0	1	1	TRUE	ACH-000910
MDAMB453_BREAST	SPG11--CTD-2008A1.2	17	11	SPG11	8955	chr15:44925703:-	CTD-2008A1.2	53379	chr15:45142585:-	ONLY_REF_SPLICE	YES	72	0	0.28	1	0.2687	0.1739	SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),CTD-2008A1.2->chr15:45118569-45176892:-	MDAMB453_BREAST	0.28	1	0.4426	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	19	0	RGL2	6675	chr6:33261427:-	PTMA	13303	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3003	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.3003	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	18	0	RGL2	1870	chr6:33266232:-	PTMA	16662	chr2:232576624:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2845	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.2845	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	17	0	RGL2	1870	chr6:33266232:-	PTMA	16674	chr2:232576636:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2687	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.2687	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MYO15B--MAP3K3	13	13	MYO15B	8655	chr17:73592636:+	MAP3K3	46650	chr17:61762877:+	ONLY_REF_SPLICE	YES	1	23	0.96	0.53	0.2055	0.2055	MYO15B->chr17:73584139-73622929:+,myosin_XVB,MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3	MDAMB453_BREAST	0.53	0.96	0.411	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RP11-453F18__B.1--SART1	12	14	RP11-453F18__B.1	10641	chrX:130889626:-	SART1	20266	chr11:65731545:+	ONLY_REF_SPLICE	YES	21	83	0.55	0.24	0.1897	0.2213	RP11-453F18__B.1->chrX:130836678-130964671:-,SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1	MDAMB453_BREAST	0.24	0.55	0.411	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	15	0	RGL2	1870	chr6:33266232:-	PTMA	16659	chr2:232576621:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2371	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.2371	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	UBA1--PFKFB1	13	8	UBA1	8203	chrX:47061009:+	PFKFB1	33848	chrX:54964157:-	ONLY_REF_SPLICE	YES	354	0	0.06	1	0.2055	0.1264	UBA1->chrX:47050260-47074527:+,ubiquitin_like_modifier_activating_enzyme_1,PFKFB1->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_1,chrX:54959394-55024967:-	MDAMB453_BREAST	0.06	1	0.3319	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	EMB--SLC8A1-AS1	13	7	EMB	9628	chr5:49698120:-	SLC8A1-AS1	40813	chr2:40478824:+	ONLY_REF_SPLICE	YES	7	0	0.74	1	0.2055	0.1106	EMB->chr5:49692026-49739082:-,embigin,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	MDAMB453_BREAST	0.74	1	0.3161	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	ZNF652--ABCC3	11	0	ZNF652	1565	chr17:47439271:-	ABCC3	47489	chr17:48768453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1739	0	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+	MDAMB453_BREAST	1	1	0.1739	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	FAM172A--KIAA0825	10	3	FAM172A	4518	chr5:93386436:-	KIAA0825	50323	chr5:93489829:-	ONLY_REF_SPLICE	YES	21	0	0.38	1	0.158	0.0474	LOCAL_REARRANGEMENT:-:[41267],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,KIAA0825->KIAA0825,chr5:93488671-93954309:-	MDAMB453_BREAST	0.38	1	0.2054	TRUE	0	1	0	2	1	TRUE	ACH-000910
MDAMB453_BREAST	MECP2--TMLHE	1	38	MECP2	3066	chrX:153357642:-	TMLHE	29830	chrX:154743926:-	ONLY_REF_SPLICE	YES	155	125	0.2	0.24	0.0158	0.6006	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon	MDAMB453_BREAST	0.2	0.24	0.6164	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	8	0	RGL2	1871	chr6:33266231:-	PTMA	16648	chr2:232576610:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	FOXP1--EIF4E3	7	3	FOXP1	1419	chr3:71632722:-	EIF4E3	51235	chr3:71777774:-	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.1106	0.0474	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:3],LOCAL_REARRANGEMENT:-:[91427],FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,EIF4E3->chr3:71724567-71803924:-,eukaryotic_translation_initiation_factor_4E_family_member_3	MDAMB453_BREAST	0.91	1	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RP11-453F18__B.1--SART1	4	15	RP11-453F18__B.1	7381	chrX:130917915:-	SART1	20198	chr11:65731477:+	ONLY_REF_SPLICE	YES	13	82	0.59	0.19	0.0632	0.2371	RP11-453F18__B.1->chrX:130836678-130964671:-,SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1	MDAMB453_BREAST	0.19	0.59	0.3003	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	GALK1--TRIM47	5	6	GALK1	4008	chr17:73758785:-	TRIM47	11621	chr17:73872894:-	ONLY_REF_SPLICE	YES	77	1	0.12	0.92	0.079	0.0948	GALK1->chr17:73747675-73761792:-,galactokinase_1,TRIM47->chr17:73870242-73874656:-,tripartite_motif_containing_47	MDAMB453_BREAST	0.12	0.92	0.1738	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	TBC1D22A--TTC38	5	5	TBC1D22A	10096	chr22:47193517:+	TTC38	26747	chr22:46664411:+	ONLY_REF_SPLICE	YES	66	3	0.13	0.77	0.079	0.079	TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,TTC38->chr22:46663858-46689905:+,tetratricopeptide_repeat_domain_38	MDAMB453_BREAST	0.13	0.77	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	SLC35B1--PRKCA	4	7	SLC35B1	7157	chr17:47780220:-	PRKCA	25872	chr17:64728806:+	ONLY_REF_SPLICE	YES	226	0	0.05	1	0.0632	0.1106	SLC35B1->chr17:47778305-47786376:-,solute_carrier_family_35_member_B1,PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha	MDAMB453_BREAST	0.05	1	0.1738	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	CLTC--RP11-615I2.2	5	0	CLTC	10692	chr17:57738974:+	RP11-615I2.2	38346	chr16:68679653:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0	CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RP11-615I2.2->chr16:68679283-68680071:-	MDAMB453_BREAST	1	1	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	ZNF652--ABCC3	5	0	ZNF652	1061	chr17:47439775:-	ABCC3	47489	chr17:48768453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.079	0	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+	MDAMB453_BREAST	1	1	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	FBXO36--RIF1	4	2	FBXO36	1308	chr2:230787325:+	RIF1	29477	chr2:152301852:+	ONLY_REF_SPLICE	YES	1	28	0.86	0.18	0.0632	0.0316	FBXO36->F-box_protein_36,chr2:230787018-230877825:+,RIF1->chr2:152266397-152364527:+,replication_timing_regulatory_factor_1	MDAMB453_BREAST	0.18	0.86	0.0948	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RP11-453F18__B.1--SART1	1	14	RP11-453F18__B.1	12864	chrX:130845679:-	SART1	20266	chr11:65731545:+	ONLY_REF_SPLICE	NO	4	83	0.79	0.15	0.0158	0.2213	RP11-453F18__B.1->chrX:130836678-130964671:-,SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1	MDAMB453_BREAST	0.15	0.79	0.2371	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RP11-453F18__B.1--SART1	1	13	RP11-453F18__B.1	7381	chrX:130917915:-	SART1	20707	chr11:65731986:+	ONLY_REF_SPLICE	YES	13	130	0.52	0.1	0.0158	0.2055	RP11-453F18__B.1->chrX:130836678-130964671:-,SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1	MDAMB453_BREAST	0.1	0.52	0.2213	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	EMB--SLC8A1-AS1	3	3	EMB	4209	chr5:49723978:-	SLC8A1-AS1	40813	chr2:40478824:+	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0474	0.0474	EMB->chr5:49692026-49739082:-,embigin,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	MDAMB453_BREAST	0.26	1	0.0948	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	FOXP1-IT1--EIF4E3	3	2	FOXP1-IT1	2710	chr3:71621899:-	EIF4E3	11089	chr3:71777774:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.83	0.0474	0.0316	FOXP1-IT1->FOXP1_intronic_transcript_1,chr3:71619406-71623608:-,EIF4E3->chr3:71724567-71803924:-,eukaryotic_translation_initiation_factor_4E_family_member_3	MDAMB453_BREAST	0.83	1	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	3	0	RGL2	1870	chr6:33266232:-	PTMA	16145	chr2:232576107:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	TCF12--NKAIN2	1	7	TCF12	7716	chr15:57384089:+	NKAIN2	52379	chr6:125139533:+	ONLY_REF_SPLICE	YES	76	0	0.1	1	0.0158	0.1106	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,NKAIN2->Na+/K+_transporting_ATPase_interacting_2,Oncogene{Bushman},chr6:124125286-125146803:+	MDAMB453_BREAST	0.1	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	METTL15--RP11-115J23.1	2	2	METTL15	3728	chr11:28135151:+	RP11-115J23.1	24968	chr11:29065992:+	ONLY_REF_SPLICE	YES	28	0	0.12	1	0.0316	0.0316	METTL15->chr11:28129795-28355054:+,methyltransferase_like_15,RP11-115J23.1->chr11:28724162-29085368:+	MDAMB453_BREAST	0.12	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	SPG11--CTD-2008A1.2	1	5	SPG11	7822	chr15:44941064:-	CTD-2008A1.2	53379	chr15:45142585:-	ONLY_REF_SPLICE	YES	47	0	0.11	1	0.0158	0.079	SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),CTD-2008A1.2->chr15:45118569-45176892:-	MDAMB453_BREAST	0.11	1	0.0948	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	AKNA--C9orf91	2	0	AKNA	13013	chr9:117122176:-	C9orf91	34543	chr9:117379398:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	AKNA->AT-hook_transcription_factor,chr9:117096436-117156685:-,C9orf91->chr9:117373486-117408702:+,chromosome_9_open_reading_frame_91	MDAMB453_BREAST	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	C17orf76-AS1--RHOA	2	0	C17orf76-AS1	1593	chr17:16342728:+	RHOA	16477	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	C17orf76-AS1->chr17:16342136-16381992:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	MDAMB453_BREAST	1	1	0.0316	TRUE	0	0	0	4	0	TRUE	ACH-000910
MDAMB453_BREAST	CASD1--RGS3	1	4	CASD1	19451	chr7:94183887:+	RGS3	34838	chr9:116258066:+	ONLY_REF_SPLICE	YES	56	31	0.08	0.14	0.0158	0.0632	CASD1->CAS1_domain_containing_1,chr7:94138531-94186331:+,RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3	MDAMB453_BREAST	0.08	0.14	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	LITAF--EMP2	2	0	LITAF	13702	chr16:11647389:-	EMP2	23025	chr16:10641534:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,EMP2->chr16:10622279-10674555:-,epithelial_membrane_protein_2	MDAMB453_BREAST	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	FAM172A--KIAA0825	1	3	FAM172A	6776	chr5:93294482:-	KIAA0825	50323	chr5:93489829:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0158	0.0474	LOCAL_REARRANGEMENT:-:[41267],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,KIAA0825->KIAA0825,chr5:93488671-93954309:-	MDAMB453_BREAST	0.18	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	METTL15--RP11-115J23.1	1	3	METTL15	3728	chr11:28135151:+	RP11-115J23.1	23893	chr11:29059289:+	ONLY_REF_SPLICE	YES	28	0	0.12	1	0.0158	0.0474	METTL15->chr11:28129795-28355054:+,methyltransferase_like_15,RP11-115J23.1->chr11:28724162-29085368:+	MDAMB453_BREAST	0.12	1	0.0632	TRUE	0	0	0	2	0	TRUE	ACH-000910
MDAMB453_BREAST	MYO15B--MAP3K3	1	3	MYO15B	5783	chr17:73588921:+	MAP3K3	46650	chr17:61762877:+	ONLY_REF_SPLICE	NO	21	23	0.16	0.15	0.0158	0.0474	MYO15B->chr17:73584139-73622929:+,myosin_XVB,MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3	MDAMB453_BREAST	0.15	0.16	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	ATOH8--ELMOD3	1	2	ATOH8	11319	chr2:86008289:+	ELMOD3	19076	chr2:85584090:+	ONLY_REF_SPLICE	NO	8	61	0.27	0.05	0.0158	0.0316	ATOH8->atonal_bHLH_transcription_factor_8,chr2:85978467-86015189:+,ELMOD3->ELMO_domain_containing_3,chr2:85581517-85618875:+	MDAMB453_BREAST	0.05	0.27	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	FBXO36--RIF1	1	2	FBXO36	2424	chr2:230797602:+	RIF1	29477	chr2:152301852:+	ONLY_REF_SPLICE	NO	3	28	0.5	0.1	0.0158	0.0316	FBXO36->F-box_protein_36,chr2:230787018-230877825:+,RIF1->chr2:152266397-152364527:+,replication_timing_regulatory_factor_1	MDAMB453_BREAST	0.1	0.5	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	PGM2L1--RP11-624D11.2	1	1	PGM2L1	12662	chr11:74049513:-	RP11-624D11.2	24131	chr11:30066002:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0.0158	PGM2L1->chr11:74041363-74109518:-,phosphoglucomutase_2-like_1,RP11-624D11.2->chr11:30065605-30105890:-	MDAMB453_BREAST	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000910
SW48_LARGE_INTESTINE	JDP2--HIST1H1C	4	1	JDP2	6637	chr14:75928157:+	HIST1H1C	15871	chr6:26056364:-	INCL_NON_REF_SPLICE	YES	9	9	0.36	0.36	0.0792	0.0198	JDP2->Jun_dimerization_protein_2,Oncogene{Bushman},chr14:75894419-75940814:+,HIST1H1C->Oncogene{Bushman},chr6:26055968-26056699:-,histone_cluster_1,_H1c	SW48_LARGE_INTESTINE	0.36	0.36	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	RABL6--RPF1	4	0	RABL6	16822	chr9:139731901:+	RPF1	23672	chr1:84945053:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0	RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+,RPF1->chr1:84944942-84963473:+,ribosome_production_factor_1_homolog	SW48_LARGE_INTESTINE	1	1	0.0792	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	ANKRD11--RPL31	3	0	ANKRD11	19658	chr16:89357507:-	RPL31	38806	chr2:101618738:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,RPL31->chr2:101618177-101640494:+,ribosomal_protein_L31	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	C17orf76-AS1--MRPS23	3	0	C17orf76-AS1	1593	chr17:16342728:+	MRPS23	13849	chr17:55926771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0594	0	C17orf76-AS1->chr17:16342136-16381992:+,MRPS23->chr17:55916842-55927417:-,mitochondrial_ribosomal_protein_S23	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	EEF2--LAMB3	3	0	EEF2	3558	chr19:3982910:-	LAMB3	32884	chr1:209788449:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	GTEx&tcga_normals:1/3694=0.03%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,LAMB3->chr1:209788215-209825811:-,laminin_subunit_beta_3	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	EIF3L--TARS2	3	0	EIF3L	13128	chr22:38274029:+	TARS2	27924	chr1:150471467:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	EIF3L->chr22:38244875-38285414:+,eukaryotic_translation_initiation_factor_3_subunit_L,TARS2->chr1:150459887-150480078:+,threonyl-tRNA_synthetase_2,_mitochondrial_(putative)	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	FAM208B--MYBBP1A	3	0	FAM208B	21444	chr10:5788811:+	MYBBP1A	43976	chr17:4448191:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,MYBBP1A->MYB_binding_protein_1a,Oncogene{Bushman},chr17:4442192-4458926:-	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	IRS1--HOOK1	3	0	IRS1	8716	chr2:227600270:-	HOOK1	43052	chr1:60341893:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	IRS1->chr2:227596033-227664475:-,insulin_receptor_substrate_1,HOOK1->chr1:60280458-60342050:+,hook_microtubule-tethering_protein_1	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	KDM6B--GNB1	3	0	KDM6B	12897	chr17:7757643:+	GNB1	33431	chr1:1717642:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	KDM6B->chr17:7743222-7758114:+,lysine_demethylase_6B,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	MYBBP1A--CTD-2537I9.12	3	0	MYBBP1A	9911	chr17:4448565:-	CTD-2537I9.12	20500	chr19:56173423:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	MYBBP1A->MYB_binding_protein_1a,Oncogene{Bushman},chr17:4442192-4458926:-,CTD-2537I9.12->chr19:56173267-56186081:-	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	PPP1R13L--UGT8	3	0	PPP1R13L	7037	chr19:45898828:-	UGT8	20980	chr4:115544223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,UGT8->UDP_glycosyltransferase_8,chr4:115519611-115599380:+	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	PPP2R4--EEF2	3	0	PPP2R4	18817	chr9:131909999:+	EEF2	27948	chr19:3980563:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	PYCR1--CCNL2	3	0	PYCR1	6149	chr17:79892837:-	CCNL2	11795	chr1:1334640:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	PYCR1->chr17:79890260-79900288:-,pyrroline-5-carboxylate_reductase_1,CCNL2->chr1:1321091-1334708:-,cyclin_L2	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	RP11-442H21.2--IGSF9B	3	0	RP11-442H21.2	1721	chr10:74035018:-	IGSF9B	26379	chr11:133786188:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	RP11-442H21.2->chr10:74034673-74035738:-,IGSF9B->chr11:133778459-133826880:-,immunoglobulin_superfamily_member_9B	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	RPL27A--ATXN1	3	0	RPL27A	3482	chr11:8706439:+	ATXN1	25410	chr6:16586138:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0594	0	RPL27A->chr11:8703958-8736306:+,ribosomal_protein_L27a,ATXN1->ataxin_1,chr6:16299343-16761722:-	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	SEMA4B--HN1L	3	0	SEMA4B	20336	chr15:90772721:+	HN1L	32061	chr16:1750049:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	SEMA4B->Oncogene{Bushman},chr15:90703836-90772911:+,semaphorin_4B,HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	SMC1A--NFATC4	3	0	SMC1A	9048	chrX:53432203:-	NFATC4	39036	chr14:24846727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	SMC1A->chrX:53401070-53449677:-,structural_maintenance_of_chromosomes_1A,NFATC4->chr14:24834879-24848810:+,nuclear_factor_of_activated_T-cells_4	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	TTC8--NFIA	3	0	TTC8	7733	chr14:89307492:+	NFIA	35586	chr1:61848961:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	TTC8->chr14:89290497-89344335:+,tetratricopeptide_repeat_domain_8,NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	AC007405.6--WAPAL	2	0	AC007405.6	1075	chr2:171627697:+	WAPAL	19514	chr10:88220253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	AC007405.6->chr2:171627623-171634658:+,WAPAL->chr10:88195013-88281572:-	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	APBB2--SCARB2	2	0	APBB2	10480	chr4:41102656:-	SCARB2	43975	chr4:77102254:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-,SCARB2->chr4:77079890-77135046:-,scavenger_receptor_class_B_member_2	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	CYFIP1--TUBGCP5	2	0	CYFIP1	18302	chr15:22958342:+	TUBGCP5	41286	chr15:22835916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:+:[18113],CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1,TUBGCP5->chr15:22833395-22873892:+,tubulin_gamma_complex_associated_protein_5	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	HIAT1--PTPRF	2	0	HIAT1	1220	chr1:100503872:+	PTPRF	22919	chr1:44019163:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	HIAT1->chr1:100503653-100548933:+,PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	IPO7--UBC	2	0	IPO7	1226	chr11:9406394:+	UBC	34107	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	IPO7->chr11:9406169-9469673:+,importin_7,UBC->chr12:125396150-125401914:-,ubiquitin_C	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	MTG1--CYHR1	2	0	MTG1	7895	chr10:135216277:+	CYHR1	22653	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	MTG1->chr10:135207598-135234811:+,mitochondrial_ribosome_associated_GTPase_1,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	NEDD4--PSPC1	2	0	NEDD4	5183	chr15:56258671:-	PSPC1	46098	chr13:20304484:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	NEDD4->chr15:56119120-56285944:-,neural_precursor_cell_expressed,_developmentally_down-regulated_4,_E3_ubiquitin_protein_ligase,PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	RPH3AL--CAPRIN2	2	0	RPH3AL	20220	chr17:96902:-	CAPRIN2	33083	chr12:30904067:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	ZFP36--SMARCA2	2	0	ZFP36	1116	chr19:39897568:+	SMARCA2	34509	chr9:2110254:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	ZFP36->Oncogene{Bushman},ZFP36_ring_finger_protein,chr19:39897453-39900052:+,SMARCA2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_2,chr9:2015342-2193624:+	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
GI1_CENTRAL_NERVOUS_SYSTEM	PKD1--RNPS1	94	15	PKD1	18676	chr16:2153128:-	RNPS1	45756	chr16:2303657:-	INCL_NON_REF_SPLICE	YES	19	185	0.85	0.37	1.0639	0.1698	PKD1->chr16:2138711-2185899:-,polycystin_1,_transient_receptor_potential_channel_interacting,RNPS1->RNA_binding_protein_with_serine_rich_domain_1,chr16:2303117-2318413:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.37	0.85	1.2337	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	75	25	PTGFRN	9314	chr1:117516945:+	USP33	30482	chr1:78191447:-	ONLY_REF_SPLICE	YES	130	51	0.43	0.66	0.8488	0.2829	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.43	0.66	1.1317	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	RPTOR--EYA2	78	13	RPTOR	26452	chr17:78867665:+	EYA2	53561	chr20:45630067:+	ONLY_REF_SPLICE	YES	32	0	0.74	1	0.8828	0.1471	RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.74	1	1.0299	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	SIN3A--MAP3K5	56	20	SIN3A	3271	chr15:75743764:-	MAP3K5	68927	chr6:136889012:-	ONLY_REF_SPLICE	YES	32	1	0.7	0.99	0.6338	0.2264	SIN3A->SIN3_transcription_regulator_family_member_A,chr15:75661720-75748183:-,MAP3K5->chr6:136878185-137113656:-,mitogen-activated_protein_kinase_kinase_kinase_5	GI1_CENTRAL_NERVOUS_SYSTEM	0.7	0.99	0.8602	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	TXNRD1--CIT	43	7	TXNRD1	11664	chr12:104682818:+	CIT	40173	chr12:120272032:-	ONLY_REF_SPLICE	YES	131	11	0.28	0.82	0.4867	0.0792	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase	GI1_CENTRAL_NERVOUS_SYSTEM	0.28	0.82	0.5659	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	RBM14--BBS1	32	2	RBM14	1476	chr11:66384528:+	BBS1	24234	chr11:66297290:+	ONLY_REF_SPLICE	YES	47	28	0.42	0.55	0.3622	0.0226	LOCAL_REARRANGEMENT:+:[82955],RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+,BBS1->Bardet-Biedl_syndrome_1,chr11:66278077-66301098:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.42	0.55	0.3848	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	30	6	PTGFRN	9314	chr1:117516945:+	USP33	39550	chr1:78178966:-	ONLY_REF_SPLICE	YES	130	70	0.22	0.34	0.3395	0.0679	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.22	0.34	0.4074	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	AIDA--FGGY	25	23	AIDA	5377	chr1:222867131:-	FGGY	27870	chr1:59922633:+	ONLY_REF_SPLICE	YES	102	21	0.32	0.7	0.2829	0.2603	AIDA->axin_interactor,_dorsalization_associated,chr1:222841355-222886552:-,FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.32	0.7	0.5432	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	LACTB--NEDD4	24	4	LACTB	5026	chr15:63421849:+	NEDD4	16950	chr15:56243787:-	ONLY_REF_SPLICE	YES	19	41	0.6	0.41	0.2716	0.0453	LACTB->Oncogene{Bushman},chr15:63413999-63434260:+,lactamase_beta,NEDD4->chr15:56119120-56285944:-,neural_precursor_cell_expressed,_developmentally_down-regulated_4,_E3_ubiquitin_protein_ligase	GI1_CENTRAL_NERVOUS_SYSTEM	0.41	0.6	0.3169	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	CASC4--LINGO1	21	5	CASC4	13652	chr15:44673174:+	LINGO1	30169	chr15:78027395:-	ONLY_REF_SPLICE	YES	110	0	0.19	1	0.2377	0.0566	{Klijn_CCL:Colo-Rectal=1},CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,LINGO1->chr15:77905369-78113242:-,leucine_rich_repeat_and_Ig_domain_containing_1	GI1_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.2943	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	NARS--CEACAMP11	21	2	NARS	1506	chr18:55288940:-	CEACAMP11	18189	chr19:43783171:-	ONLY_REF_SPLICE	YES	32	0	0.42	1	0.2377	0.0226	NARS->asparaginyl-tRNA_synthetase,chr18:55267888-55289445:-,CEACAMP11->carcinoembryonic_antigen_related_cell_adhesion_molecule_pseudogene_11,chr19:43783085-43788470:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.42	1	0.2603	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	ERC1--WNK1	17	12	ERC1	12874	chr12:1225199:+	WNK1	47540	chr12:922808:+	ONLY_REF_SPLICE	YES	23	73	0.56	0.28	0.1924	0.1358	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},LOCAL_REARRANGEMENT:+:[79057],ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.28	0.56	0.3282	TRUE	0	1	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	FHOD3--MOCOS	18	7	FHOD3	1287	chr18:33877963:+	MOCOS	51285	chr18:33828885:+	ONLY_REF_SPLICE	YES	24	19	0.51	0.57	0.2037	0.0792	LOCAL_REARRANGEMENT:+:[25557],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	GI1_CENTRAL_NERVOUS_SYSTEM	0.51	0.57	0.2829	TRUE	0	0	0	2	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	DAB1--ST6GALNAC5	17	7	DAB1	3257	chr1:58971732:-	ST6GALNAC5	39861	chr1:77509889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1924	0.0792	DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-,ST6GALNAC5->ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_5,chr1:77333126-77531396:+	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2716	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	IQCG--HBS1L	16	6	IQCG	1614	chr3:197686400:-	HBS1L	26502	chr6:135371785:-	ONLY_REF_SPLICE	YES	1	148	0.96	0.13	0.1811	0.0679	IQCG->IQ_motif_containing_G,chr3:197615946-197687013:-,HBS1L->HBS1_like_translational_GTPase,chr6:135281516-135424194:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.13	0.96	0.249	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	14	12	PTGFRN	9314	chr1:117516945:+	USP33	33861	chr1:78186890:-	ONLY_REF_SPLICE	YES	130	69	0.17	0.27	0.1584	0.1358	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.17	0.27	0.2942	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	TRIO--DLG2	16	4	TRIO	12208	chr5:14316852:+	DLG2	107326	chr11:83544813:-	ONLY_REF_SPLICE	YES	61	0	0.25	1	0.1811	0.0453	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	GI1_CENTRAL_NERVOUS_SYSTEM	0.25	1	0.2264	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	MED13L--RP11-103B5.2	13	3	MED13L	14361	chr12:116445216:-	RP11-103B5.2	44831	chr12:117579196:+	ONLY_REF_SPLICE	YES	18	0	0.47	1	0.1471	0.034	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,RP11-103B5.2->chr12:117537286-117579896:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.47	1	0.1811	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	SIN3A--MAP3K5	7	21	SIN3A	8235	chr15:75728687:-	MAP3K5	68927	chr6:136889012:-	ONLY_REF_SPLICE	YES	33	1	0.46	0.97	0.0792	0.2377	SIN3A->SIN3_transcription_regulator_family_member_A,chr15:75661720-75748183:-,MAP3K5->chr6:136878185-137113656:-,mitogen-activated_protein_kinase_kinase_kinase_5	GI1_CENTRAL_NERVOUS_SYSTEM	0.46	0.97	0.3169	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	TXNRD1--CIT	12	0	TXNRD1	10019	chr12:104680887:+	CIT	40173	chr12:120272032:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1358	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1358	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	AIDA--FGGY	8	15	AIDA	5377	chr1:222867131:-	FGGY	28986	chr1:59977983:+	ONLY_REF_SPLICE	YES	102	44	0.18	0.34	0.0905	0.1698	AIDA->axin_interactor,_dorsalization_associated,chr1:222841355-222886552:-,FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.18	0.34	0.2603	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	AIDA--FGGY	6	18	AIDA	4956	chr1:222867552:-	FGGY	27870	chr1:59922633:+	ONLY_REF_SPLICE	YES	117	21	0.17	0.53	0.0679	0.2037	AIDA->axin_interactor,_dorsalization_associated,chr1:222841355-222886552:-,FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.17	0.53	0.2716	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	4	26	PTGFRN	9314	chr1:117516945:+	USP33	26122	chr1:78200101:-	ONLY_REF_SPLICE	YES	130	28	0.19	0.52	0.0453	0.2943	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.19	0.52	0.3396	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	NARS--CEACAMP11	7	11	NARS	1506	chr18:55288940:-	CEACAMP11	16278	chr19:43788498:-	INCL_NON_REF_SPLICE	YES	32	0	0.36	1	0.0792	0.1245	NARS->asparaginyl-tRNA_synthetase,chr18:55267888-55289445:-,CEACAMP11->carcinoembryonic_antigen_related_cell_adhesion_molecule_pseudogene_11,chr19:43783085-43788470:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	CIB2--RP11-467N20.5	8	1	CIB2	2415	chr15:78416047:-	RP11-467N20.5	14135	chr15:23411062:-	ONLY_REF_SPLICE	YES	13	0	0.41	1	0.0905	0.0113	CIB2->calcium_and_integrin_binding_family_member_2,chr15:78396948-78423886:-,RP11-467N20.5->chr15:23405069-23414193:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.41	1	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	CIB2--RP11-467N20.5	8	1	CIB2	1380	chr15:78423507:-	RP11-467N20.5	14135	chr15:23411062:-	ONLY_REF_SPLICE	YES	14	0	0.39	1	0.0905	0.0113	CIB2->calcium_and_integrin_binding_family_member_2,chr15:78396948-78423886:-,RP11-467N20.5->chr15:23405069-23414193:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PYGO1--RP11-19J5.2	6	7	PYGO1	2113	chr15:55880033:-	RP11-19J5.2	17117	chr15:70113460:-	ONLY_REF_SPLICE	YES	2	2	0.87	0.87	0.0679	0.0792	PYGO1->chr15:55831088-55881145:-,pygopus_family_PHD_finger_1,RP11-19J5.2->chr15:70113095-70115195:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.87	0.87	0.1471	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	1	25	PTGFRN	9314	chr1:117516945:+	USP33	29064	chr1:78194397:-	ONLY_REF_SPLICE	YES	130	45	0.17	0.37	0.0113	0.2829	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.17	0.37	0.2942	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	3	13	PTGFRN	8206	chr1:117509952:+	USP33	30482	chr1:78191447:-	ONLY_REF_SPLICE	YES	234	51	0.06	0.24	0.034	0.1471	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.06	0.24	0.1811	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	ARHGEF10--DLGAP2	5	0	ARHGEF10	1138	chr8:1772279:+	DLGAP2	49820	chr8:1616495:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0566	0	ARHGEF10->Rho_guanine_nucleotide_exchange_factor_10,chr8:1772142-1906807:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0566	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	AIDA--FGGY	1	12	AIDA	4956	chr1:222867552:-	FGGY	28986	chr1:59977983:+	ONLY_REF_SPLICE	NO	117	44	0.1	0.23	0.0113	0.1358	AIDA->axin_interactor,_dorsalization_associated,chr1:222841355-222886552:-,FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.1	0.23	0.1471	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	GALK2--LINC00593	3	1	GALK2	18668	chr15:49575915:+	LINC00593	31930	chr15:70133085:+	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.034	0.0113	GALK2->chr15:49447853-49660066:+,galactokinase_2,LINC00593->chr15:70127573-70135459:+,long_intergenic_non-protein_coding_RNA_593	GI1_CENTRAL_NERVOUS_SYSTEM	0.18	1	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	TXNRD1--CIT	3	1	TXNRD1	10256	chr12:104681124:+	CIT	40173	chr12:120272032:-	ONLY_REF_SPLICE	YES	38	11	0.1	0.27	0.034	0.0113	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase	GI1_CENTRAL_NERVOUS_SYSTEM	0.1	0.27	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	FHOD3--MOCOS	2	3	FHOD3	1287	chr18:33877963:+	MOCOS	52364	chr18:33831122:+	ONLY_REF_SPLICE	YES	24	28	0.17	0.15	0.0226	0.034	LOCAL_REARRANGEMENT:+:[25557],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	GI1_CENTRAL_NERVOUS_SYSTEM	0.15	0.17	0.0566	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	CIB2--RP11-467N20.5	2	2	CIB2	3509	chr15:78412910:-	RP11-467N20.5	14135	chr15:23411062:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.0226	0.0226	CIB2->calcium_and_integrin_binding_family_member_2,chr15:78396948-78423886:-,RP11-467N20.5->chr15:23405069-23414193:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000756
NCIH1915_LUNG	RPS6KB1--VMP1	664	188	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	60	208	0.93	0.8	6.4544	1.8275	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH1915_LUNG	0.8	0.93	8.2819	TRUE	0	9	0	10	6	TRUE	ACH-000434
NCIH1915_LUNG	ABCD3--RP11-148B18.3	470	308	ABCD3	1212	chr1:94884144:+	RP11-148B18.3	30348	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	193	0	0.8	1	4.5686	2.9939	LOCAL_REARRANGEMENT:+:[83529],ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+,RP11-148B18.3->chr1:94798823-94800404:+	NCIH1915_LUNG	0.8	1	7.5625	TRUE	0	2	0	2	2	TRUE	ACH-000434
NCIH1915_LUNG	SLC23A2--BCAS3	322	25	SLC23A2	2214	chr20:4982052:-	BCAS3	73679	chr17:59445688:+	ONLY_REF_SPLICE	YES	0	8	1	0.98	3.13	0.243	SLC23A2->chr20:4833002-4990939:-,solute_carrier_family_23_member_2,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	NCIH1915_LUNG	0.98	1	3.373	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RPS24--CAMK2G	241	65	RPS24	2926	chr10:79795478:+	CAMK2G	23484	chr10:75602299:-	ONLY_REF_SPLICE	YES	4691	164	0.06	0.65	2.3426	0.6318	{Klijn_CCL:Lung=1},RPS24->chr10:79793518-79816570:+,ribosomal_protein_S24,CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-	NCIH1915_LUNG	0.06	0.65	2.9744	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RPS24--CAMK2G	173	123	RPS24	2926	chr10:79795478:+	CAMK2G	21626	chr10:75607840:-	ONLY_REF_SPLICE	YES	4691	101	0.06	0.75	1.6816	1.1956	{Klijn_CCL:Lung=1},RPS24->chr10:79793518-79816570:+,ribosomal_protein_S24,CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-	NCIH1915_LUNG	0.06	0.75	2.8772	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	ZNF7--C8orf33	174	44	ZNF7	9341	chr8:146062892:+	C8orf33	20316	chr8:146278448:+	ONLY_REF_SPLICE	YES	23	56	0.9	0.8	1.6914	0.4277	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,C8orf33->chr8:146277764-146281416:+,chromosome_8_open_reading_frame_33	NCIH1915_LUNG	0.8	0.9	2.1191	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RPS24--CAMK2G	119	95	RPS24	2926	chr10:79795478:+	CAMK2G	22361	chr10:75607105:-	ONLY_REF_SPLICE	YES	4691	102	0.04	0.68	1.1567	0.9234	{Klijn_CCL:Lung=1},RPS24->chr10:79793518-79816570:+,ribosomal_protein_S24,CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-	NCIH1915_LUNG	0.04	0.68	2.0801	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	UBAP1--RP11-537H15.3	107	54	UBAP1	1236	chr9:34179238:+	RP11-537H15.3	14819	chr9:34084330:+	ONLY_REF_SPLICE	YES	76	0	0.68	1	1.0401	0.5249	LOCAL_REARRANGEMENT:+:[82780],UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,RP11-537H15.3->chr9:34084330-34096223:+	NCIH1915_LUNG	0.68	1	1.565	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RPS6KB1--VMP1	45	199	RPS6KB1	1839	chr17:57971285:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	60	208	0.8	0.54	0.4374	1.9344	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH1915_LUNG	0.54	0.8	2.3718	TRUE	0	9	0	10	6	TRUE	ACH-000434
NCIH1915_LUNG	SNRPA1--ADAMTS7	62	53	SNRPA1	3867	chr15:101832167:-	ADAMTS7	22672	chr15:79069930:-	ONLY_REF_SPLICE	YES	204	0	0.36	1	0.6027	0.5152	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',ADAMTS7->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_7,chr15:79051545-79103773:-	NCIH1915_LUNG	0.36	1	1.1179	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	NEGR1--TCF20	47	23	NEGR1	3835	chr1:72400762:-	TCF20	34337	chr22:42575708:-	ONLY_REF_SPLICE	YES	29	17	0.71	0.8	0.4569	0.2236	NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1,TCF20->chr22:42556019-42739622:-,transcription_factor_20_(AR1)	NCIH1915_LUNG	0.71	0.8	0.6805	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	OSBPL6--AC005037.3	47	10	OSBPL6	8716	chr2:179193105:+	AC005037.3	39979	chr2:201873709:+	ONLY_REF_SPLICE	YES	17	2	0.77	0.97	0.4569	0.0972	OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6,AC005037.3->chr2:201827986-201873825:+	NCIH1915_LUNG	0.77	0.97	0.5541	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	OSBPL7--FAM171A2	44	12	OSBPL7	9569	chr17:45890632:-	FAM171A2	18198	chr17:42437500:-	ONLY_REF_SPLICE	YES	11	0	0.84	1	0.4277	0.1166	OSBPL7->chr17:45884738-45899200:-,oxysterol_binding_protein_like_7,FAM171A2->chr17:42430583-42441243:-,family_with_sequence_similarity_171_member_A2	NCIH1915_LUNG	0.84	1	0.5443	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	ZNF7--C8orf33	25	62	ZNF7	9349	chr8:146062900:+	C8orf33	19969	chr8:146278101:+	INCL_NON_REF_SPLICE	YES	28	64	0.76	0.58	0.243	0.6027	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,C8orf33->chr8:146277764-146281416:+,chromosome_8_open_reading_frame_33	NCIH1915_LUNG	0.58	0.76	0.8457	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	TMEM120B--CTSB	31	0	TMEM120B	13972	chr12:122216098:+	CTSB	41201	chr8:11700733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3013	0	TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,CTSB->Oncogene{Bushman},cathepsin_B,chr8:11700033-11726957:-	NCIH1915_LUNG	1	1	0.3013	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	ZNF7--C8orf33	13	62	ZNF7	9344	chr8:146062895:+	C8orf33	19967	chr8:146278099:+	INCL_NON_REF_SPLICE	YES	27	64	0.74	0.54	0.1264	0.6027	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,C8orf33->chr8:146277764-146281416:+,chromosome_8_open_reading_frame_33	NCIH1915_LUNG	0.54	0.74	0.7291	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RPS6KB1--VMP1	2	89	RPS6KB1	1240	chr17:57970686:+	VMP1	36266	chr17:57889031:+	ONLY_REF_SPLICE	YES	60	170	0.6	0.35	0.0194	0.8651	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH1915_LUNG	0.35	0.6	0.8845	TRUE	0	6	0	2	3	TRUE	ACH-000434
NCIH1915_LUNG	SNRPA1--ADAMTS7	13	10	SNRPA1	1186	chr15:101835302:-	ADAMTS7	22672	chr15:79069930:-	ONLY_REF_SPLICE	YES	179	0	0.11	1	0.1264	0.0972	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',ADAMTS7->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_7,chr15:79051545-79103773:-	NCIH1915_LUNG	0.11	1	0.2236	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	SNRPA1--ADAMTS7	13	6	SNRPA1	1186	chr15:101835302:-	ADAMTS7	25073	chr15:79067135:-	ONLY_REF_SPLICE	YES	179	69	0.1	0.22	0.1264	0.0583	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',ADAMTS7->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_7,chr15:79051545-79103773:-	NCIH1915_LUNG	0.1	0.22	0.1847	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	14	0	RP11-254B13.1	1021	chr12:68947642:-	RP11-255H23.4	5999	chr19:24010024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1361	0	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	1	1	0.1361	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RPS6KB1--VMP1	4	40	RPS6KB1	1192	chr17:57970638:+	VMP1	36291	chr17:57889056:+	INCL_NON_REF_SPLICE	YES	56	204	0.44	0.18	0.0389	0.3888	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH1915_LUNG	0.18	0.44	0.4277	TRUE	0	6	0	2	3	TRUE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	13	3	RP11-254B13.1	1100	chr12:68947563:-	RP11-255H23.4	5962	chr19:24010061:-	INCL_NON_REF_SPLICE	NO	16	0	0.5	1	0.1264	0.0292	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	0.5	1	0.1556	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	11	7	RP11-254B13.1	1137	chr12:68947526:-	RP11-255H23.4	5984	chr19:24010039:-	INCL_NON_REF_SPLICE	YES	158	0	0.1	1	0.1069	0.068	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	0.1	1	0.1749	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	CUL3--RMDN2	12	2	CUL3	1450	chr2:225449661:-	RMDN2	43717	chr2:38201183:+	ONLY_REF_SPLICE	YES	46	27	0.23	0.34	0.1166	0.0194	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,RMDN2->chr2:38150330-38294285:+,regulator_of_microtubule_dynamics_2	NCIH1915_LUNG	0.23	0.34	0.136	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	OSBPL6--AC005037.3	10	5	OSBPL6	8604	chr2:179192993:+	AC005037.3	39966	chr2:201873696:+	INCL_NON_REF_SPLICE	YES	20	2	0.43	0.88	0.0972	0.0486	OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6,AC005037.3->chr2:201827986-201873825:+	NCIH1915_LUNG	0.43	0.88	0.1458	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	11	1	RP11-254B13.1	1062	chr12:68947601:-	RP11-255H23.4	6004	chr19:24010019:-	INCL_NON_REF_SPLICE	YES	7	0	0.63	1	0.1069	0.0097	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	0.63	1	0.1166	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	CUL3--RMDN2	10	4	CUL3	1450	chr2:225449661:-	RMDN2	38570	chr2:38156405:+	ONLY_REF_SPLICE	YES	46	34	0.23	0.29	0.0972	0.0389	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,RMDN2->chr2:38150330-38294285:+,regulator_of_microtubule_dynamics_2	NCIH1915_LUNG	0.23	0.29	0.1361	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	9	0	RP11-254B13.1	1019	chr12:68947644:-	RP11-255H23.4	5994	chr19:24010029:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0875	0	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	1	1	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	8	1	RP11-254B13.1	1050	chr12:68947613:-	RP11-255H23.4	5992	chr19:24010031:-	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0778	0.0097	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	0.6	1	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	SNRPA1--ADAMTS7	5	10	SNRPA1	3867	chr15:101832167:-	ADAMTS7	25073	chr15:79067135:-	ONLY_REF_SPLICE	YES	204	69	0.07	0.18	0.0486	0.0972	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',ADAMTS7->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_7,chr15:79051545-79103773:-	NCIH1915_LUNG	0.07	0.18	0.1458	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	STAP2--PRAP1	5	6	STAP2	9446	chr19:4327121:-	PRAP1	15142	chr10:135160660:+	INCL_NON_REF_SPLICE	YES	24	0	0.31	1	0.0486	0.0583	STAP2->chr19:4324040-4342783:-,signal_transducing_adaptor_family_member_2,PRAP1->chr10:135160650-135166187:+,proline-rich_acidic_protein_1	NCIH1915_LUNG	0.31	1	0.1069	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	ZNF7--C8orf33	1	20	ZNF7	9341	chr8:146062892:+	C8orf33	20551	chr8:146278683:+	ONLY_REF_SPLICE	YES	23	62	0.48	0.25	0.0097	0.1944	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,C8orf33->chr8:146277764-146281416:+,chromosome_8_open_reading_frame_33	NCIH1915_LUNG	0.25	0.48	0.2041	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	OSBPL6--AC005037.3	5	3	OSBPL6	6949	chr2:179188352:+	AC005037.3	39966	chr2:201873696:+	INCL_NON_REF_SPLICE	YES	54	2	0.13	0.8	0.0486	0.0292	OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6,AC005037.3->chr2:201827986-201873825:+	NCIH1915_LUNG	0.13	0.8	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	4	5	RP11-254B13.1	1117	chr12:68947546:-	RP11-255H23.4	5965	chr19:24010058:-	INCL_NON_REF_SPLICE	NO	96	0	0.09	1	0.0389	0.0486	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	0.09	1	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	5	0	RP11-254B13.1	1019	chr12:68947644:-	RP11-255H23.4	6025	chr19:24009998:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	1	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-156P1.3--FAM101B	4	3	RP11-156P1.3	10988	chr17:45110644:-	FAM101B	23280	chr17:293285:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0389	0.0292	RP11-156P1.3->chr17:45061411-45177689:-,FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B	NCIH1915_LUNG	0.64	1	0.0681	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	STAP2--PRAP1	3	7	STAP2	9628	chr19:4326939:-	PRAP1	15142	chr10:135160660:+	INCL_NON_REF_SPLICE	YES	26	0	0.28	1	0.0292	0.068	STAP2->chr19:4324040-4342783:-,signal_transducing_adaptor_family_member_2,PRAP1->chr10:135160650-135166187:+,proline-rich_acidic_protein_1	NCIH1915_LUNG	0.28	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	COLEC11--TRAPPC12	4	0	COLEC11	7214	chr2:3660972:+	TRAPPC12	29906	chr2:3461392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0	COLEC11->chr2:3642426-3692048:+,collectin_subfamily_member_11,TRAPPC12->chr2:3383446-3488865:+,trafficking_protein_particle_complex_12	NCIH1915_LUNG	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	SCLY--HNRNPA1P47	4	0	SCLY	5584	chr2:238978118:+	HNRNPA1P47	24715	chr2:195052116:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	SCLY->chr2:238969530-239008054:+,selenocysteine_lyase,HNRNPA1P47->chr2:195052103-195053033:+,heterogeneous_nuclear_ribonucleoprotein_A1_pseudogene_47	NCIH1915_LUNG	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	STAP2--PRAP1	3	4	STAP2	9446	chr19:4327121:-	PRAP1	16412	chr10:135163599:+	ONLY_REF_SPLICE	YES	24	0	0.23	1	0.0292	0.0389	STAP2->chr19:4324040-4342783:-,signal_transducing_adaptor_family_member_2,PRAP1->chr10:135160650-135166187:+,proline-rich_acidic_protein_1	NCIH1915_LUNG	0.23	1	0.0681	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	ZNF7--C8orf33	2	7	ZNF7	9341	chr8:146062892:+	C8orf33	21272	chr8:146279404:+	ONLY_REF_SPLICE	YES	23	135	0.28	0.06	0.0194	0.068	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,C8orf33->chr8:146277764-146281416:+,chromosome_8_open_reading_frame_33	NCIH1915_LUNG	0.06	0.28	0.0874	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	MICAL2--RP13-631K18.5	3	1	MICAL2	11476	chr11:12183966:+	RP13-631K18.5	52636	chr11:12110669:+	ONLY_REF_SPLICE	YES	54	0	0.07	1	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[4555],MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2,RP13-631K18.5->chr11:12108438-12110988:+	NCIH1915_LUNG	0.07	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	LYPLAL1--RRP15	3	0	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	NCIH1915_LUNG	1	1	0.0292	TRUE	0	12	0	13	2	TRUE	ACH-000434
NCIH1915_LUNG	P4HA1--H2AFY2	3	0	P4HA1	1209	chr10:74856524:-	H2AFY2	25603	chr10:71849816:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1,H2AFY2->H2A_histone_family_member_Y2,chr10:71812552-71872036:+	NCIH1915_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	3	0	RP11-254B13.1	1011	chr12:68947652:-	RP11-255H23.4	6026	chr19:24009997:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	FAM60A--DENND5B	2	1	FAM60A	2035	chr12:31478958:-	DENND5B	23799	chr12:31648853:-	ONLY_REF_SPLICE	YES	37	8	0.07	0.27	0.0194	0.0097	LOCAL_REARRANGEMENT:-:[55165],FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-	NCIH1915_LUNG	0.07	0.27	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	STAP2--PRAP1	1	5	STAP2	9628	chr19:4326939:-	PRAP1	16412	chr10:135163599:+	ONLY_REF_SPLICE	NO	26	0	0.19	1	0.0097	0.0486	STAP2->chr19:4324040-4342783:-,signal_transducing_adaptor_family_member_2,PRAP1->chr10:135160650-135166187:+,proline-rich_acidic_protein_1	NCIH1915_LUNG	0.19	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	DST--RAB23	2	0	DST	4600	chr6:56716195:-	RAB23	131309	chr6:57075243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,RAB23->RAB23,_member_RAS_oncogene_family,chr6:57053607-57087078:-	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	EIF4A2--RP11-686D22.8	2	0	EIF4A2	5678	chr3:186505671:+	RP11-686D22.8	12001	chr17:33734610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,RP11-686D22.8->chr17:33733703-33736787:-	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	ELP2--ANKRD17	2	0	ELP2	3778	chr18:33716340:+	ANKRD17	65405	chr4:73958017:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	ELP2->chr18:33709407-33757909:+,elongator_acetyltransferase_complex_subunit_2,ANKRD17->ankyrin_repeat_domain_17,chr4:73939093-74124515:-	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	LUC7L3--SRSF11	2	0	LUC7L3	1288	chr17:48797192:+	SRSF11	27776	chr1:70694105:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LUC7L3->LUC7_like_3_pre-mRNA_splicing_factor,chr17:48796905-48833574:+,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	NDUFA12--PLEKHA5	2	0	NDUFA12	4760	chr12:95387946:-	PLEKHA5	25631	chr12:19406874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NDUFA12->NADH:ubiquinone_oxidoreductase_subunit_A12,chr12:95290831-95397546:-,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	NRBF2--AKR1E2	2	0	NRBF2	1211	chr10:64893260:+	AKR1E2	12247	chr10:4872867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NRBF2->chr10:64893050-64914783:+,nuclear_receptor_binding_factor_2,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	PNO1--PPP3R1	2	0	PNO1	4135	chr2:68389795:+	PPP3R1	18738	chr2:68408142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Prostate=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:+:-:[2619],PNO1->chr2:68384976-68403370:+,partner_of_NOB1_homolog,PPP3R1->chr2:68405989-68483369:-,protein_phosphatase_3_regulatory_subunit_B,_alpha	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	NCIH1915_LUNG	1	1	0.0194	TRUE	0	1	0	17	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-156P1.3--FAM101B	1	3	RP11-156P1.3	9884	chr17:45112410:-	FAM101B	23280	chr17:293285:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0097	0.0292	RP11-156P1.3->chr17:45061411-45177689:-,FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B	NCIH1915_LUNG	0.44	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	ATXN7--THOC7	1	1	ATXN7	5937	chr3:63898901:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	NO	13	16	0.13	0.11	0.0097	0.0097	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	NCIH1915_LUNG	0.11	0.13	0.0194	TRUE	0	4	3	3	1	TRUE	ACH-000434
NCIH1915_LUNG	NFX1--SPINK4	1	1	NFX1	13411	chr9:33338587:+	SPINK4	35514	chr9:33245110:+	ONLY_REF_SPLICE	YES	27	0	0.07	1	0.0097	0.0097	LOCAL_REARRANGEMENT:+:[41944],NFX1->chr9:33290509-33371155:+,nuclear_transcription_factor,_X-box_binding_1,SPINK4->chr9:33218363-33248565:+,serine_peptidase_inhibitor,_Kazal_type_4	NCIH1915_LUNG	0.07	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
YKG1_CENTRAL_NERVOUS_SYSTEM	DTYMK--SLC8A1-AS1	28	14	DTYMK	1338	chr2:242626069:-	SLC8A1-AS1	35521	chr2:40478824:+	ONLY_REF_SPLICE	YES	500	0	0.08	1	0.3651	0.1826	DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.5477	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008132.1	3	16	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.0391	0.2086	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.2477	TRUE	0	0	0	12	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	VIM--PPIA	7	0	VIM	2122	chr10:17271379:+	PPIA	12215	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0913	0	VIM->chr10:17270258-17279592:+,vimentin,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0913	TRUE	0	0	0	6	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RAI1--LRRC48	4	6	RAI1	5710	chr17:17627473:+	LRRC48	22061	chr17:17877166:+	ONLY_REF_SPLICE	YES	23	17	0.3	0.37	0.0522	0.0782	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,LRRC48->chr17:17876127-17920203:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.3	0.37	0.1304	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	AC026150.5--FMN1	4	1	AC026150.5	2136	chr15:30491534:+	FMN1	43840	chr15:33069120:-	ONLY_REF_SPLICE	YES	0	8	1	0.38	0.0522	0.013	AC026150.5->chr15:30488239-30506743:+,FMN1->chr15:33057747-33486897:-,formin_1	YKG1_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RABGAP1L--DARS2	4	1	RABGAP1L	18286	chr1:174363283:+	DARS2	67170	chr1:173814367:+	ONLY_REF_SPLICE	YES	25	65	0.17	0.07	0.0522	0.013	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,DARS2->aspartyl-tRNA_synthetase_2,_mitochondrial,chr1:173793641-173827684:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.07	0.17	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	PVT1--RP11-89M16.1	3	3	PVT1	1202	chr8:128806980:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	26	0	0.19	1	0.0391	0.0391	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	YKG1_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.0782	TRUE	0	1	0	3	1	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008132.1	1	9	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	NO	3	6	0.77	0.62	0.013	0.1174	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.62	0.77	0.1304	TRUE	0	0	0	16	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RAI1--LRRC48	3	0	RAI1	5710	chr17:17627473:+	LRRC48	25409	chr17:17887142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0391	0	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,LRRC48->chr17:17876127-17920203:+	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0391	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	CALM2--SRBD1	2	0	CALM2	1161	chr2:47403580:-	SRBD1	34701	chr2:45704214:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,SRBD1->S1_RNA_binding_domain_1,chr2:45615819-45839304:-	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	LRRFIP1--RAPH1	2	0	LRRFIP1	1165	chr2:238536383:+	RAPH1	45193	chr2:204360076:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,RAPH1->Oncogene{Bushman},Ras_association_(RalGDS/AF-6)_and_pleckstrin_homology_domains_1,chr2:204259068-204400133:-	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	PVT1--RP11-89M16.1	1	4	PVT1	2520	chr8:128808317:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	28	0	0.15	1	0.013	0.0522	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	YKG1_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.0652	TRUE	0	1	0	3	1	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	AC026150.5--FMN1	1	1	AC026150.5	1079	chr15:30488317:+	FMN1	43840	chr15:33069120:-	ONLY_REF_SPLICE	YES	2	8	0.5	0.2	0.013	0.013	AC026150.5->chr15:30488239-30506743:+,FMN1->chr15:33057747-33486897:-,formin_1	YKG1_CENTRAL_NERVOUS_SYSTEM	0.2	0.5	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	WWOX--VAT1L	1	1	WWOX	23541	chr16:78466649:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	32	0	0.06	1	0.013	0.013	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	YKG1_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.026	TRUE	0	1	0	1	1	TRUE	ACH-000570
SNU1196_BILIARY_TRACT	PRKRIR--C11orf30	109	73	PRKRIR	4518	chr11:76075382:-	C11orf30	23642	chr11:76169227:+	ONLY_REF_SPLICE	YES	148	18	0.55	0.91	1.0572	0.708	LOCAL_INVERSION:-:+:[63952],PRKRIR->chr11:76061000-76092015:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SNU1196_BILIARY_TRACT	0.55	0.91	1.7652	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	DPP8--RPL24P4	115	42	DPP8	16197	chr15:65766547:-	RPL24P4	32936	chr6:42924474:-	INCL_NON_REF_SPLICE	YES	36	0	0.81	1	1.1154	0.4073	DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,RPL24P4->chr6:42924083-42924503:-,ribosomal_protein_L24_pseudogene_4	SNU1196_BILIARY_TRACT	0.81	1	1.5227	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	PRKRIR--C11orf30	89	48	PRKRIR	3423	chr11:76076896:-	C11orf30	23642	chr11:76169227:+	ONLY_REF_SPLICE	YES	116	18	0.54	0.88	0.8632	0.4655	LOCAL_INVERSION:-:+:[63952],PRKRIR->chr11:76061000-76092015:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SNU1196_BILIARY_TRACT	0.54	0.88	1.3287	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	PHACTR4--SMPDL3B	61	16	PHACTR4	2277	chr1:28733974:+	SMPDL3B	31109	chr1:28271743:+	ONLY_REF_SPLICE	YES	104	76	0.43	0.5	0.5916	0.1552	PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,SMPDL3B->chr1:28261504-28285668:+,sphingomyelin_phosphodiesterase_acid_like_3B	SNU1196_BILIARY_TRACT	0.43	0.5	0.7468	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	CTD-2547E10.2--EEF2K	44	10	CTD-2547E10.2	1617	chr16:21531149:-	EEF2K	35295	chr16:22255951:+	ONLY_REF_SPLICE	YES	19	11	0.74	0.83	0.4267	0.097	CTD-2547E10.2->chr16:21458004-21531765:-,EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase	SNU1196_BILIARY_TRACT	0.74	0.83	0.5237	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	C11orf30--GRM5	38	7	C11orf30	11007	chr11:76175124:+	GRM5	46172	chr11:88386571:-	ONLY_REF_SPLICE	YES	7	0	0.87	1	0.3686	0.0679	C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	SNU1196_BILIARY_TRACT	0.87	1	0.4365	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	PRKRIR--C11orf30	15	76	PRKRIR	4518	chr11:76075382:-	C11orf30	22578	chr11:76165793:+	ONLY_REF_SPLICE	YES	148	21	0.38	0.81	0.1455	0.7371	LOCAL_INVERSION:-:+:[63952],PRKRIR->chr11:76061000-76092015:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SNU1196_BILIARY_TRACT	0.38	0.81	0.8826	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	DPP8--RPL24P4	23	40	DPP8	16197	chr15:65766547:-	RPL24P4	32950	chr6:42924460:-	INCL_NON_REF_SPLICE	YES	36	0	0.64	1	0.2231	0.388	DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,RPL24P4->chr6:42924083-42924503:-,ribosomal_protein_L24_pseudogene_4	SNU1196_BILIARY_TRACT	0.64	1	0.6111	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	CTD-2547E10.2--EEF2K	27	13	CTD-2547E10.2	3162	chr16:21513098:-	EEF2K	35295	chr16:22255951:+	ONLY_REF_SPLICE	YES	23	11	0.63	0.78	0.2619	0.1261	CTD-2547E10.2->chr16:21458004-21531765:-,EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase	SNU1196_BILIARY_TRACT	0.63	0.78	0.388	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	PRKRIR--C11orf30	1	73	PRKRIR	4518	chr11:76075382:-	C11orf30	23620	chr11:76169205:+	ONLY_REF_SPLICE	NO	148	18	0.33	0.8	0.0097	0.708	LOCAL_INVERSION:-:+:[63952],PRKRIR->chr11:76061000-76092015:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SNU1196_BILIARY_TRACT	0.33	0.8	0.7177	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	DPP8--RPL24P4	14	20	DPP8	15117	chr15:65771218:-	RPL24P4	32936	chr6:42924474:-	INCL_NON_REF_SPLICE	YES	40	0	0.46	1	0.1358	0.194	DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,RPL24P4->chr6:42924083-42924503:-,ribosomal_protein_L24_pseudogene_4	SNU1196_BILIARY_TRACT	0.46	1	0.3298	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	PRKRIR--C11orf30	3	49	PRKRIR	3423	chr11:76076896:-	C11orf30	22578	chr11:76165793:+	ONLY_REF_SPLICE	YES	116	21	0.31	0.71	0.0291	0.4752	LOCAL_INVERSION:-:+:[63952],PRKRIR->chr11:76061000-76092015:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SNU1196_BILIARY_TRACT	0.31	0.71	0.5043	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	EYA3--RP1-27O5.3	12	9	EYA3	3318	chr1:28374894:-	RP1-27O5.3	35237	chr1:33002086:+	ONLY_REF_SPLICE	YES	20	0	0.51	1	0.1164	0.0873	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,RP1-27O5.3->chr1:32930658-33066393:+	SNU1196_BILIARY_TRACT	0.51	1	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	DPP8--RPL24P4	3	42	DPP8	16197	chr15:65766547:-	RPL24P4	32923	chr6:42924487:-	INCL_NON_REF_SPLICE	YES	36	0	0.56	1	0.0291	0.4073	DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,RPL24P4->chr6:42924083-42924503:-,ribosomal_protein_L24_pseudogene_4	SNU1196_BILIARY_TRACT	0.56	1	0.4364	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	DPP8--RPL24P4	3	42	DPP8	16197	chr15:65766547:-	RPL24P4	32905	chr6:42924505:-	INCL_NON_REF_SPLICE	YES	36	0	0.56	1	0.0291	0.4073	DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,RPL24P4->chr6:42924083-42924503:-,ribosomal_protein_L24_pseudogene_4	SNU1196_BILIARY_TRACT	0.56	1	0.4364	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	ZC3H7A--BCAR4	11	0	ZC3H7A	1144	chr16:11890980:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1067	0	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU1196_BILIARY_TRACT	1	1	0.1067	TRUE	0	12	0	3	12	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	PHACTR4--SMPDL3B	5	16	PHACTR4	2277	chr1:28733974:+	SMPDL3B	30019	chr1:28268786:+	ONLY_REF_SPLICE	YES	104	81	0.17	0.21	0.0485	0.1552	PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,SMPDL3B->chr1:28261504-28285668:+,sphingomyelin_phosphodiesterase_acid_like_3B	SNU1196_BILIARY_TRACT	0.17	0.21	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	PHACTR4--SMPDL3B	3	17	PHACTR4	2277	chr1:28733974:+	SMPDL3B	29215	chr1:28267982:+	ONLY_REF_SPLICE	YES	104	81	0.16	0.2	0.0291	0.1649	PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,SMPDL3B->chr1:28261504-28285668:+,sphingomyelin_phosphodiesterase_acid_like_3B	SNU1196_BILIARY_TRACT	0.16	0.2	0.194	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	EYA3--RP1-27O5.3	4	9	EYA3	3318	chr1:28374894:-	RP1-27O5.3	34865	chr1:33001714:+	ONLY_REF_SPLICE	YES	20	0	0.39	1	0.0388	0.0873	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,RP1-27O5.3->chr1:32930658-33066393:+	SNU1196_BILIARY_TRACT	0.39	1	0.1261	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	EYA3--RP1-27O5.3	4	6	EYA3	3318	chr1:28374894:-	RP1-27O5.3	36317	chr1:33019060:+	ONLY_REF_SPLICE	YES	20	3	0.33	0.77	0.0388	0.0582	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,RP1-27O5.3->chr1:32930658-33066393:+	SNU1196_BILIARY_TRACT	0.33	0.77	0.097	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	ZC3H7A--BCAR4	4	1	ZC3H7A	2049	chr16:11890075:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	7	0	0.42	1	0.0388	0.0097	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU1196_BILIARY_TRACT	0.42	1	0.0485	TRUE	0	12	0	3	12	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	C11orf30--GRM5	3	0	C11orf30	4490	chr11:76164432:+	GRM5	46172	chr11:88386571:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	SNU1196_BILIARY_TRACT	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	C11orf30--GRM5	3	0	C11orf30	3415	chr11:76163001:+	GRM5	46172	chr11:88386571:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	SNU1196_BILIARY_TRACT	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	ZC3H7A--BCAR4	2	1	ZC3H7A	2049	chr16:11890075:-	BCAR4	31097	chr16:11915612:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0194	0.0097	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU1196_BILIARY_TRACT	0.3	1	0.0291	TRUE	0	7	0	3	7	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	DANCR--GMDS	2	0	DANCR	1530	chr4:53579126:+	GMDS	18225	chr6:1742820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	SNU1196_BILIARY_TRACT	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	FAM35A--GATAD2A	2	0	FAM35A	3144	chr10:88856746:+	GATAD2A	20833	chr19:19546940:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	FAM35A->chr10:88853918-88951225:+,family_with_sequence_similarity_35_member_A,GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+	SNU1196_BILIARY_TRACT	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000461
CALU6_LUNG	RPS25--FOXR1	610	3	RPS25	1410	chr11:118888992:-	FOXR1	7849	chr11:118849492:+	ONLY_REF_SPLICE	YES	66	93	0.9	0.87	5.1883	0.0255	LOCAL_INVERSION:-:+:[34421],RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	CALU6_LUNG	0.87	0.9	5.2138	TRUE	0	0	0	2	0	TRUE	ACH-000264
CALU6_LUNG	RPS25--FOXR1	392	138	RPS25	1734	chr11:118888668:-	FOXR1	7849	chr11:118849492:+	ONLY_REF_SPLICE	YES	2051	93	0.21	0.85	3.3341	1.1737	LOCAL_INVERSION:-:+:[34421],RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	CALU6_LUNG	0.21	0.85	4.5078	TRUE	0	0	0	2	0	TRUE	ACH-000264
CALU6_LUNG	RPS25--FOXR1	4	254	RPS25	1734	chr11:118888668:-	FOXR1	6473	chr11:118842330:+	INCL_NON_REF_SPLICE	NO	2051	0	0.11	1	0.034	2.1604	LOCAL_INVERSION:-:+:[34421],RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	CALU6_LUNG	0.11	1	2.1944	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	ZNF644--DHCR24	59	16	ZNF644	1283	chr1:91487547:-	DHCR24	19933	chr1:55349446:-	ONLY_REF_SPLICE	YES	21	330	0.78	0.19	0.5018	0.1361	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-	CALU6_LUNG	0.19	0.78	0.6379	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	SORL1--PCCA	47	7	SORL1	47923	chr11:121485764:+	PCCA	90804	chr13:101077887:+	ONLY_REF_SPLICE	YES	29	31	0.65	0.64	0.3998	0.0595	{Klijn_CCL:Lung=1},SORL1->Oncogene{Bushman},chr11:121322912-121504402:+,sortilin-related_receptor,_L(DLR_class)_A_repeats_containing,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	CALU6_LUNG	0.64	0.65	0.4593	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	STK17B--HECW2	39	11	STK17B	8253	chr2:197021163:-	HECW2	48650	chr2:197092978:-	ONLY_REF_SPLICE	YES	44	2	0.53	0.96	0.3317	0.0936	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[17867],STK17B->chr2:196998290-197041227:-,serine/threonine_kinase_17b,HECW2->HECT,_C2_and_WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr2:197059094-197458416:-	CALU6_LUNG	0.53	0.96	0.4253	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	ARID5B--LRRC20	37	15	ARID5B	2114	chr10:63662172:+	LRRC20	27183	chr10:72061264:-	ONLY_REF_SPLICE	YES	10	11	0.84	0.83	0.3147	0.1276	ARID5B->AT-rich_interaction_domain_5B,chr10:63661059-63856703:+,LRRC20->chr10:72058729-72142382:-,leucine_rich_repeat_containing_20	CALU6_LUNG	0.83	0.84	0.4423	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	CDC5L--RP11-444E17.6	32	4	CDC5L	11320	chr6:44390546:+	RP11-444E17.6	27091	chr6:44320463:+	ONLY_REF_SPLICE	YES	44	0	0.45	1	0.2722	0.034	LOCAL_REARRANGEMENT:+:[8568],CDC5L->cell_division_cycle_5_like,chr6:44355262-44418163:+,RP11-444E17.6->chr6:44240931-44346694:+	CALU6_LUNG	0.45	1	0.3062	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	UGGT2--GRIK4	28	4	UGGT2	1328	chr13:96705409:-	GRIK4	55120	chr11:120673402:+	ONLY_REF_SPLICE	YES	147	0	0.18	1	0.2382	0.034	UGGT2->UDP-glucose_glycoprotein_glucosyltransferase_2,chr13:96453834-96705736:-,GRIK4->chr11:120382468-120859613:+,glutamate_ionotropic_receptor_kainate_type_subunit_4	CALU6_LUNG	0.18	1	0.2722	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	TMEM135--DLG2	17	2	TMEM135	5670	chr11:86868448:+	DLG2	46644	chr11:83962334:-	ONLY_REF_SPLICE	YES	56	0	0.25	1	0.1446	0.017	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	CALU6_LUNG	0.25	1	0.1616	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	PTMA--PTMS	17	0	PTMA	6024	chr2:232576657:+	PTMS	13970	chr12:6879335:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1446	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CALU6_LUNG	1	1	0.1446	TRUE	0	0	0	16	0	TRUE	ACH-000264
CALU6_LUNG	ZNF644--DHCR24	7	18	ZNF644	2000	chr1:91486830:-	DHCR24	19933	chr1:55349446:-	ONLY_REF_SPLICE	YES	25	330	0.5	0.07	0.0595	0.1531	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-	CALU6_LUNG	0.07	0.5	0.2126	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	CASC9--RP11-300E4.2	10	2	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	30	0	0.29	1	0.0851	0.017	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	CALU6_LUNG	0.29	1	0.1021	TRUE	0	23	0	19	23	TRUE	ACH-000264
CALU6_LUNG	ZNF644--DHCR24	5	20	ZNF644	2636	chr1:91486194:-	DHCR24	19933	chr1:55349446:-	INCL_NON_REF_SPLICE	YES	26	330	0.49	0.07	0.0425	0.1701	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-	CALU6_LUNG	0.07	0.49	0.2126	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	FAM155A--TBC1D4	8	2	FAM155A	3226	chr13:107862932:-	TBC1D4	11324	chr13:75936743:-	ONLY_REF_SPLICE	YES	0	34	1	0.23	0.068	0.017	FAM155A->chr13:107820883-108519083:-,family_with_sequence_similarity_155_member_A,TBC1D4->TBC1_domain_family_member_4,chr13:75858808-76056250:-	CALU6_LUNG	0.23	1	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	ZNF644--DHCR24	3	19	ZNF644	2126	chr1:91486704:-	DHCR24	19933	chr1:55349446:-	INCL_NON_REF_SPLICE	YES	29	330	0.43	0.06	0.0255	0.1616	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-	CALU6_LUNG	0.06	0.43	0.1871	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	OSGEPL1--ORMDL1	5	2	OSGEPL1	9132	chr2:190611765:-	ORMDL1	18292	chr2:190636628:-	INCL_NON_REF_SPLICE	YES	24	169	0.23	0.04	0.0425	0.017	LOCAL_REARRANGEMENT:-:[7096],OSGEPL1->O-sialoglycoprotein_endopeptidase-like_1,chr2:190611386-190627953:-,ORMDL1->ORMDL_sphingolipid_biosynthesis_regulator_1,chr2:190635049-190649097:-	CALU6_LUNG	0.04	0.23	0.0595	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	CASC9--RP11-300E4.2	3	1	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	8	0	0.33	1	0.0255	0.0085	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	CALU6_LUNG	0.33	1	0.034	TRUE	0	12	0	10	12	TRUE	ACH-000264
CALU6_LUNG	TMEM135--DLG2	2	1	TMEM135	4604	chr11:86802437:+	DLG2	46644	chr11:83962334:-	ONLY_REF_SPLICE	YES	33	0	0.08	1	0.017	0.0085	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	CALU6_LUNG	0.08	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	C17orf76-AS1--CENPV	2	0	C17orf76-AS1	3309	chr17:16344444:+	CENPV	14833	chr17:16253343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	LOCAL_INVERSION:+:-:[85166],C17orf76-AS1->chr17:16342136-16381992:+,CENPV->centromere_protein_V,chr17:16245848-16256970:-	CALU6_LUNG	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	ELAVL1--GNG7	2	0	ELAVL1	5763	chr19:8038609:-	GNG7	20389	chr19:2555186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,GNG7->G_protein_subunit_gamma_7,chr19:2511217-2702707:-	CALU6_LUNG	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	MPHOSPH6--SAMD3	2	0	MPHOSPH6	4051	chr16:82197687:-	SAMD3	30529	chr6:130476170:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	MPHOSPH6->M-phase_phosphoprotein_6,chr16:82181403-82203831:-,SAMD3->chr6:130465460-130686570:-,sterile_alpha_motif_domain_containing_3	CALU6_LUNG	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	RASSF8--ASUN	2	0	RASSF8	9484	chr12:26208379:+	ASUN	38418	chr12:27059370:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	CALU6_LUNG	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000264
TUHR10TKB_KIDNEY	ANKRD46--SNX31	15	6	ANKRD46	10680	chr8:101540073:-	SNX31	35189	chr8:101589303:-	ONLY_REF_SPLICE	YES	6	0	0.78	1	0.1701	0.068	LOCAL_REARRANGEMENT:-:[13104],ANKRD46->ankyrin_repeat_domain_46,chr8:101521980-101572012:-,SNX31->chr8:101585116-101675643:-,sorting_nexin_31	TUHR10TKB_KIDNEY	0.78	1	0.2381	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	CAV1--ZFP36L1	13	0	CAV1	4903	chr7:116199668:+	ZFP36L1	16700	chr14:69255321:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1474	0	CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+,ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-	TUHR10TKB_KIDNEY	1	1	0.1474	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	AKAP8--AKAP8L	3	1	AKAP8	6496	chr19:15482763:-	AKAP8L	30887	chr19:15491423:-	ONLY_REF_SPLICE	YES	37	30	0.1	0.12	0.034	0.0113	PROTCLUST,LOCAL_REARRANGEMENT:-:[250],AKAP8->A-kinase_anchoring_protein_8,chr19:15464196-15490609:-,AKAP8L->A-kinase_anchoring_protein_8_like,chr19:15490859-15529952:-	TUHR10TKB_KIDNEY	0.1	0.12	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	CTC-459F4.3--AIFM2	3	0	CTC-459F4.3	1147	chr19:28284517:+	AIFM2	15657	chr10:71883853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	CTC-459F4.3->chr19:28284371-28409771:+,AIFM2->Oncogene{Bushman},apoptosis_inducing_factor,_mitochondria_associated_2,chr10:71857979-71892690:-	TUHR10TKB_KIDNEY	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	EGLN2--GAPDH	3	0	EGLN2	8507	chr19:41313131:+	GAPDH	16865	chr12:6647267:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	EGLN2->chr19:41304901-41314338:+,egl-9_family_hypoxia_inducible_factor_2,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	TUHR10TKB_KIDNEY	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	HMOX1--ACAT2	3	0	HMOX1	4151	chr22:35782738:+	ACAT2	12508	chr6:160183108:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	HMOX1->chr22:35776354-35790207:+,heme_oxygenase_1,ACAT2->acetyl-CoA_acetyltransferase_2,chr6:160181360-160200144:+	TUHR10TKB_KIDNEY	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	TOR1A--COL6A2	3	0	TOR1A	5100	chr9:132580859:-	COL6A2	16481	chr21:47535919:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	TOR1A->chr9:132575223-132586413:-,torsin_family_1_member_A,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	TUHR10TKB_KIDNEY	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	AHNAK--RER1	2	0	AHNAK	2224	chr11:62314132:-	RER1	34171	chr1:2327223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,RER1->chr1:2323267-2336883:+,retention_in_endoplasmic_reticulum_sorting_receptor_1	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	CASD1--KIFAP3	2	0	CASD1	5852	chr7:94157562:+	KIFAP3	48928	chr1:169930376:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CASD1->CAS1_domain_containing_1,chr7:94138531-94186331:+,KIFAP3->chr1:169890467-170054349:-,kinesin_associated_protein_3	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	CCM2L--ANKS6	2	0	CCM2L	7021	chr20:30613722:+	ANKS6	28867	chr9:101513378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CCM2L->CCM2_like_scaffolding_protein,chr20:30598245-30619984:+,ANKS6->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_6,chr9:101493611-101559247:-	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	ENOSF1--IER3IP1	2	0	ENOSF1	2637	chr18:706470:-	IER3IP1	26473	chr18:44683908:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1,IER3IP1->chr18:44661027-44702652:-,chr18:44681413-44702745:-,immediate_early_response_3_interacting_protein_1	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	HRH1--PSMG3	2	0	HRH1	1307	chr3:11179085:+	PSMG3	15556	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	HRH1->chr3:11178779-11305243:+,histamine_receptor_H1,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	IQCG--QRICH2	2	0	IQCG	15730	chr3:197639546:-	QRICH2	27964	chr17:74290102:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	IQCG->IQ_motif_containing_G,chr3:197615946-197687013:-,QRICH2->chr17:74270130-74303761:-,glutamine_rich_2	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	LIG3--RAD51L3-RFFL	2	0	LIG3	17521	chr17:33329808:+	RAD51L3-RFFL	30473	chr17:33353580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_INVERSION:+:-:[6285],LIG3->DNA_ligase_3,chr17:33307513-33332083:+,RAD51L3-RFFL->chr17:33338368-33448512:-	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	LUC7L3--FAM53A	2	0	LUC7L3	1288	chr17:48797192:+	FAM53A	34395	chr4:1619838:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LUC7L3->LUC7_like_3_pre-mRNA_splicing_factor,chr17:48796905-48833574:+,FAM53A->chr4:1619642-1686029:-,family_with_sequence_similarity_53_member_A	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	OGFOD3--METRNL	2	0	OGFOD3	2462	chr17:80373274:-	METRNL	24317	chr17:81050912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-,METRNL->chr17:81037567-81052864:+,meteorin,_glial_cell_differentiation_regulator-like	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	RANBP17--G3BP1	2	0	RANBP17	21762	chr5:170455993:+	G3BP1	51996	chr5:151166133:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+,G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	RCC1--PRKD3	2	0	RCC1	2175	chr1:28834672:+	PRKD3	23147	chr2:37520414:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PRKD3->chr2:37477645-37551951:-,protein_kinase_D3	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	RLF--MYCL	2	0	RLF	1264	chr1:40627308:+	MYCL	18060	chr1:40367115:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	6	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	SPTLC1--ACVR1	2	0	SPTLC1	7135	chr9:94841716:-	ACVR1	27667	chr2:158675071:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SPTLC1->chr9:94794281-94877666:-,serine_palmitoyltransferase_long_chain_base_subunit_1,ACVR1->activin_A_receptor_type_1,chr2:158592958-158732374:-	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	STK25--PTMA	2	0	STK25	2725	chr2:242447421:-	PTMA	21539	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	STK25->chr2:242432089-242449145:-,serine/threonine_kinase_25,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	2	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	TICAM1--SRP68	2	0	TICAM1	1091	chr19:4831626:-	SRP68	19657	chr17:74044051:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1,SRP68->chr17:74035184-74068734:-,signal_recognition_particle_68	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	UBA1--FTSJ1	2	0	UBA1	10289	chrX:47063095:+	FTSJ1	27738	chrX:48341374:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	UBA1->chrX:47050260-47074527:+,ubiquitin_like_modifier_activating_enzyme_1,FTSJ1->FtsJ_RNA_methyltransferase_homolog_1_(E._coli),chrX:48334541-48344752:+	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	UBAP1--GPI	2	0	UBAP1	1236	chr9:34179238:+	GPI	20807	chr19:34868640:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	ZNF599--RP4-694B14.5	2	0	ZNF599	4117	chr19:35258221:-	RP4-694B14.5	17330	chr20:25614685:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZNF599->chr19:35248981-35264134:-,zinc_finger_protein_599,RP4-694B14.5->chr20:25604681-25658710:+	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	ZNF749--IMMP2L	2	0	ZNF749	1265	chr19:57946961:+	IMMP2L	10612	chr7:111201979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZNF749->chr19:57946697-57956853:+,zinc_finger_protein_749,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	ZNRF1--USP7	2	0	ZNRF1	2066	chr16:75033993:+	USP7	26706	chr16:9024254:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZNRF1->chr16:75032928-75144892:+,zinc_and_ring_finger_1,_E3_ubiquitin_protein_ligase,USP7->Oncogene{Bushman},chr16:8985951-9058371:-,ubiquitin_specific_peptidase_7_(herpes_virus-associated)	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	ANKRD46--SNX31	1	3	ANKRD46	10680	chr8:101540073:-	SNX31	36246	chr8:101586188:-	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0113	0.034	LOCAL_REARRANGEMENT:-:[13104],ANKRD46->ankyrin_repeat_domain_46,chr8:101521980-101572012:-,SNX31->chr8:101585116-101675643:-,sorting_nexin_31	TUHR10TKB_KIDNEY	0.4	1	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000459
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CRKL--AP3D1	335	78	CRKL	3286	chr22:21288532:+	AP3D1	13764	chr19:2138713:-	ONLY_REF_SPLICE	YES	95	25	0.81	0.94	3.2093	0.7473	{Klijn_CCL:Head-Neck=1},CRKL->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:21271714-21308037:+,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog-like,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.81	0.94	3.9566	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	RAC1--MRPS7	54	11	RAC1	4962	chr7:6431672:+	MRPS7	14569	chr17:73258578:+	ONLY_REF_SPLICE	YES	607	334	0.1	0.16	0.5173	0.1054	{Klijn_CCL:Head-Neck=1},RAC1->ArcherDX_panel,FoundationOne_panel,chr7:6414154-6443608:+,ras-related_C3_botulinum_toxin_substrate_1_(rho_family,_small_GTP_binding_protein_Rac1),MRPS7->chr17:73257755-73262454:+,mitochondrial_ribosomal_protein_S7	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.1	0.16	0.6227	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CCDC93--AC010982.1	46	15	CCDC93	22249	chr2:118696605:-	AC010982.1	36250	chr2:114764596:+	ONLY_REF_SPLICE	YES	15	0	0.8	1	0.4407	0.1437	CCDC93->chr2:118673054-118771709:-,coiled-coil_domain_containing_93,AC010982.1->chr2:114737146-114764879:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.5844	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	KIAA0247--RAD51B	10	3	KIAA0247	3670	chr14:70125430:+	RAD51B	31283	chr14:68758601:+	ONLY_REF_SPLICE	YES	23	8	0.36	0.62	0.0958	0.0287	KIAA0247->chr14:70078313-70181859:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.36	0.62	0.1245	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CDCA5--KMT2C	9	6	CDCA5	1801	chr11:64850836:-	KMT2C	19007	chr7:151970952:-	ONLY_REF_SPLICE	YES	238	4	0.06	0.79	0.0862	0.0575	CDCA5->cell_division_cycle_associated_5,chr11:64833772-64851636:-,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.06	0.79	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	KIAA0247--RAD51B	6	6	KIAA0247	4868	chr14:70170309:+	RAD51B	31283	chr14:68758601:+	ONLY_REF_SPLICE	YES	26	8	0.32	0.6	0.0575	0.0575	KIAA0247->chr14:70078313-70181859:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.32	0.6	0.115	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	VEGFC--GALNTL6	6	2	VEGFC	1563	chr4:177713319:-	GALNTL6	18911	chr4:173150807:+	ONLY_REF_SPLICE	YES	43	0	0.16	1	0.0575	0.0192	{Klijn_CCL:Head-Neck=1},VEGFC->chr4:177604689-177713881:-,vascular_endothelial_growth_factor_C,GALNTL6->chr4:172733405-173962710:+,polypeptide_N-acetylgalactosaminyltransferase-like_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.16	1	0.0767	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CRKL--AP3D1	2	14	CRKL	3286	chr22:21288532:+	AP3D1	15387	chr19:2137090:-	ONLY_REF_SPLICE	YES	95	160	0.14	0.09	0.0192	0.1341	{Klijn_CCL:Head-Neck=1},CRKL->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:21271714-21308037:+,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog-like,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.09	0.14	0.1533	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CCDC93--AC010982.1	4	3	CCDC93	20057	chr2:118701600:-	AC010982.1	36250	chr2:114764596:+	ONLY_REF_SPLICE	YES	35	0	0.17	1	0.0383	0.0287	CCDC93->chr2:118673054-118771709:-,coiled-coil_domain_containing_93,AC010982.1->chr2:114737146-114764879:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.17	1	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	TIMP2--CANT1	3	0	TIMP2	1425	chr17:76921045:-	CANT1	19382	chr17:76994045:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:-:[66330],TIMP2->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_2,chr17:76849059-76921469:-,CANT1->Oncogene{Bushman},calcium_activated_nucleotidase_1,chr17:76987799-77005949:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	TIMP2--CANT1	3	0	TIMP2	1429	chr17:76921041:-	CANT1	17888	chr17:76996352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:-:[66330],TIMP2->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_2,chr17:76849059-76921469:-,CANT1->Oncogene{Bushman},calcium_activated_nucleotidase_1,chr17:76987799-77005949:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	TXNRD1--UBC	3	0	TXNRD1	10019	chr12:104680887:+	UBC	37328	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CCDC93--AC010982.1	2	2	CCDC93	18552	chr2:118703105:-	AC010982.1	36250	chr2:114764596:+	ONLY_REF_SPLICE	YES	52	0	0.07	1	0.0192	0.0192	CCDC93->chr2:118673054-118771709:-,coiled-coil_domain_containing_93,AC010982.1->chr2:114737146-114764879:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CAPZA2--CAV1	2	0	CAPZA2	3371	chr7:116502704:+	CAV1	28621	chr7:116199000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0192	TRUE	0	1	0	2	1	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CAPZA2--RPL41	2	0	CAPZA2	3371	chr7:116502704:+	RPL41	25576	chr12:56510559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,RPL41->chr12:56510370-56511727:+,ribosomal_protein_L41	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0192	TRUE	0	1	0	2	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	KMT2E--PSMC2	2	0	KMT2E	4686	chr7:104681470:+	PSMC2	39811	chr7:103002404:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,PSMC2->chr7:102984701-103009842:+,proteasome_26S_subunit,_ATPase_2	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0192	TRUE	0	1	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	TIMP2--CANT1	2	0	TIMP2	1429	chr17:76921041:-	CANT1	19382	chr17:76994045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	LOCAL_REARRANGEMENT:-:[66330],TIMP2->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_2,chr17:76849059-76921469:-,CANT1->Oncogene{Bushman},calcium_activated_nucleotidase_1,chr17:76987799-77005949:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000207
KNS81_CENTRAL_NERVOUS_SYSTEM	DNASE1--SULT1A3	44	27	DNASE1	1279	chr16:3662007:+	SULT1A3	27399	chr16:30212046:+	ONLY_REF_SPLICE	YES	7	62	0.91	0.53	0.4943	0.3033	DNASE1->chr16:3661729-3730144:+,deoxyribonuclease_I,SULT1A3->chr16:30205754-30215631:+,sulfotransferase_family_1A_member_3	KNS81_CENTRAL_NERVOUS_SYSTEM	0.53	0.91	0.7976	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	DENND5A--LMO1	28	28	DENND5A	1430	chr11:9286508:-	LMO1	35304	chr11:8252051:-	ONLY_REF_SPLICE	YES	25	0	0.69	1	0.3146	0.3146	DENND5A->DENN_domain_containing_5A,chr11:9160372-9286937:-,LMO1->ArcherDX_panel,FoundationOne_panel,LIM_domain_only_1,Oncogene{Bushman},chr11:8245851-8290263:-	KNS81_CENTRAL_NERVOUS_SYSTEM	0.69	1	0.6292	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	RAD18--EML6	27	13	RAD18	14138	chr3:8932073:-	EML6	58697	chr2:55176019:+	ONLY_REF_SPLICE	YES	68	1	0.37	0.98	0.3033	0.1461	RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6	KNS81_CENTRAL_NERVOUS_SYSTEM	0.37	0.98	0.4494	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	TRIM23--7SK	9	3	TRIM23	12822	chr5:64892248:-	7SK	20219	chr5:68325990:-	INCL_NON_REF_SPLICE	YES	27	0	0.31	1	0.1011	0.0337	TRIM23->chr5:64885507-64921802:-,tripartite_motif_containing_23,7SK->chr13:45697228-45697549:+,chr16:81993524-81996298:+,chr21:26467335-26475983:+,chr5:68266266-68325992:-,chr6:136866330-136866630:+,chr8:144624280-144624570:+,chrX:12632122-12632316:-	KNS81_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.1348	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	TRIM23--CTC-498J12.1	3	2	TRIM23	12822	chr5:64892248:-	CTC-498J12.1	21596	chr5:68334403:-	ONLY_REF_SPLICE	YES	27	0	0.16	1	0.0337	0.0225	TRIM23->chr5:64885507-64921802:-,tripartite_motif_containing_23,CTC-498J12.1->chr5:68334345-68339648:-	KNS81_CENTRAL_NERVOUS_SYSTEM	0.16	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	DNASE1--SULT1A3	3	0	DNASE1	1057	chr16:3661785:+	SULT1A3	27399	chr16:30212046:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	DNASE1->chr16:3661729-3730144:+,deoxyribonuclease_I,SULT1A3->chr16:30205754-30215631:+,sulfotransferase_family_1A_member_3	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	AC108142.1--LINC00290	2	2	AC108142.1	9824	chr4:182933815:-	LINC00290	19702	chr4:182076892:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0225	0.0225	AC108142.1->chr4:182795591-183066402:-,LINC00290->chr4:181985242-182080302:-,long_intergenic_non-protein_coding_RNA_290	KNS81_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.045	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MTAP--NCOA5	2	0	MTAP	12211	chr9:21859424:+	NCOA5	25367	chr20:44699175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,NCOA5->chr20:44689624-44718591:-,nuclear_receptor_coactivator_5	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	TBC1D14--GTF2H5	2	0	TBC1D14	6339	chr4:6969151:+	GTF2H5	28434	chr6:158613009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TBC1D14->TBC1_domain_family_member_14,chr4:6910969-7034845:+,GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	TLL2--GLS	2	0	TLL2	5871	chr10:98188388:-	GLS	36267	chr2:191765290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TLL2->chr10:98124363-98273675:-,tolloid_like_2,GLS->chr2:191745553-191830278:+,glutaminase	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	ADCY9--PPL	1	1	ADCY9	3436	chr16:4163751:-	PPL	29978	chr16:4954041:-	ONLY_REF_SPLICE	YES	29	10	0.06	0.17	0.0112	0.0112	ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,PPL->chr16:4932508-5010742:-,periplakin	KNS81_CENTRAL_NERVOUS_SYSTEM	0.06	0.17	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	ADCY9--PPL	1	1	ADCY9	3436	chr16:4163751:-	PPL	28878	chr16:4960950:-	ONLY_REF_SPLICE	YES	29	0	0.06	1	0.0112	0.0112	ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,PPL->chr16:4932508-5010742:-,periplakin	KNS81_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000479
HS274T_FIBROBLAST	COL1A2--COL4A1	70	0	COL1A2	4942	chr7:94029571:+	COL4A1	46892	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2049	0	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS274T_FIBROBLAST	1	1	1.2049	TRUE	0	0	0	1	0	TRUE	ACH-000134
HS274T_FIBROBLAST	COL1A2--COL6A2	5	0	COL1A2	4948	chr7:94029577:+	COL6A2	50044	chr21:47544806:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0861	0	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=4;pct=0.05%;dist=Cells_-_Transformed_fibroblasts=4},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS274T_FIBROBLAST	1	1	0.0861	TRUE	0	0	0	1	0	TRUE	ACH-000134
HS274T_FIBROBLAST	COL1A1--COL6A1	3	0	COL1A1	4656	chr17:48275119:-	COL6A1	35509	chr21:47419571:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS274T_FIBROBLAST	1	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000134
HS274T_FIBROBLAST	RP11-111M22.3--DIAPH3	2	0	RP11-111M22.3	1379	chr11:76155322:-	DIAPH3	26362	chr13:60485970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	RP11-111M22.3->chr11:76152382-76155700:-,DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3	HS274T_FIBROBLAST	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000134
COLO800_SKIN	HEG1--CLSTN2	286	132	HEG1	15790	chr3:124716533:-	CLSTN2	32125	chr3:140122471:+	ONLY_REF_SPLICE	YES	96	0	0.81	1	2.8259	1.3043	{Klijn_CCL:Skin=1},HEG1->chr3:124684554-124774802:-,heart_development_protein_with_EGF_like_domains_1,CLSTN2->calsyntenin_2,chr3:139654027-140296239:+	COLO800_SKIN	0.81	1	4.1302	TRUE	0	0	0	1	0	TRUE	ACH-000401
COLO800_SKIN	CD63--TGFBI	106	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0474	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	COLO800_SKIN	1	1	1.0474	TRUE	0	0	0	14	0	TRUE	ACH-000401
COLO800_SKIN	DCBLD2--RP11-666A20.4	14	4	DCBLD2	18529	chr3:98530038:-	RP11-666A20.4	30882	chr3:125627403:-	ONLY_REF_SPLICE	YES	162	0	0.1	1	0.1383	0.0395	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,RP11-666A20.4->chr3:125626848-125629115:-	COLO800_SKIN	0.1	1	0.1778	TRUE	0	0	0	1	0	TRUE	ACH-000401
COLO800_SKIN	DCBLD2--RP11-379B18.5	10	3	DCBLD2	18529	chr3:98530038:-	RP11-379B18.5	41961	chr3:125546298:-	ONLY_REF_SPLICE	YES	162	8	0.07	0.62	0.0988	0.0296	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,RP11-379B18.5->chr3:125546081-125607918:-	COLO800_SKIN	0.07	0.62	0.1284	TRUE	0	0	0	1	0	TRUE	ACH-000401
COLO800_SKIN	DCBLD2--RP11-666A20.4	3	4	DCBLD2	18529	chr3:98530038:-	RP11-666A20.4	30877	chr3:125627408:-	INCL_NON_REF_SPLICE	YES	162	0	0.04	1	0.0296	0.0395	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,RP11-666A20.4->chr3:125626848-125629115:-	COLO800_SKIN	0.04	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000401
COLO800_SKIN	FAM20C--PRKAR1B	2	0	FAM20C	5852	chr7:208976:+	PRKAR1B	28324	chr7:647089:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cortex=1},{Klijn_CCL:Skin=1},FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	COLO800_SKIN	1	1	0.0198	TRUE	0	2	0	2	0	TRUE	ACH-000401
MDAMB175VII_BREAST	UPK3B--PMS2P10	4	734	UPK3B	9229	chr7:76648314:+	PMS2P10	12263	chr7:74928921:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	9.5104	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P10->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_10,chr7:74916804-74928928:-	MDAMB175VII_BREAST	1	1	9.5622	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	149	0	MTND4P12	1209	chr5:134263518:-	MTATP8P1	5477	chr1:569014:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9306	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	1.9306	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	TENM4--NRG1	107	52	TENM4	25756	chr11:78565149:-	NRG1	66574	chr8:32453346:+	ONLY_REF_SPLICE	YES	19	0	0.89	1	1.3864	0.6738	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,NRG1->chr8:31496902-32622548:+,neuregulin_1	MDAMB175VII_BREAST	0.89	1	2.0602	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	PPP6R3--TENM4	75	82	PPP6R3	1110	chr11:68228295:+	TENM4	45342	chr11:78926954:-	ONLY_REF_SPLICE	YES	1	2	0.99	0.99	0.9718	1.0625	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	MDAMB175VII_BREAST	0.99	0.99	2.0343	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	PTPRN2--DDX11L9	67	19	PTPRN2	15088	chr7:157691365:-	DDX11L9	32145	chr15:102519160:-	INCL_NON_REF_SPLICE	YES	182	1	0.32	0.99	0.8681	0.2462	PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,DDX11L9->DEAD/H-box_helicase_11_like_9,chr15:102516758-102519298:-	MDAMB175VII_BREAST	0.32	0.99	1.1143	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	TPCN2--RSF1	59	24	TPCN2	4647	chr11:68825162:+	RSF1	32948	chr11:77451981:-	ONLY_REF_SPLICE	YES	68	48	0.55	0.63	0.7645	0.311	{Klijn_CCL:Breast=1},TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1	MDAMB175VII_BREAST	0.55	0.63	1.0755	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	TIAM1--MIS18A	49	19	TIAM1	2051	chr21:32931240:-	MIS18A	42048	chr21:33647207:-	ONLY_REF_SPLICE	YES	7	61	0.91	0.53	0.6349	0.2462	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,MIS18A->MIS18_kinetochore_protein_A,chr21:33640530-33651380:-	MDAMB175VII_BREAST	0.53	0.91	0.8811	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	PPP6R3--TENM4	6	82	PPP6R3	1110	chr11:68228295:+	TENM4	44198	chr11:78932168:-	ONLY_REF_SPLICE	YES	1	3	0.99	0.97	0.0777	1.0625	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	MDAMB175VII_BREAST	0.97	0.99	1.1402	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	RSF1--TENM4	23	7	RSF1	7572	chr11:77458081:-	TENM4	63794	chr11:78516537:-	ONLY_REF_SPLICE	YES	50	22	0.38	0.58	0.298	0.0907	RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	MDAMB175VII_BREAST	0.38	0.58	0.3887	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	19	0	MTND4P12	1216	chr5:134263511:-	MTATP8P1	5480	chr1:569017:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2462	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	0.2462	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	18	2	MTND4P12	1999	chr5:134262728:-	MTATP8P1	5474	chr1:569011:+	INCL_NON_REF_SPLICE	YES	2	3	0.91	0.87	0.2332	0.0259	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	0.87	0.91	0.2591	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	C7orf50--ZFAND2A	12	8	C7orf50	3078	chr7:1166893:-	ZFAND2A	18758	chr7:1197893:-	ONLY_REF_SPLICE	YES	157	123	0.11	0.14	0.1555	0.1037	LOCAL_REARRANGEMENT:-:[13811],C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,ZFAND2A->chr7:1191707-1200395:-,zinc_finger_AN1-type_containing_2A	MDAMB175VII_BREAST	0.11	0.14	0.2592	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	UPK3B--PMS2P10	13	0	UPK3B	7014	chr7:76157169:+	PMS2P10	17042	chr7:74917288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1684	0	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P10->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_10,chr7:74916804-74928928:-	MDAMB175VII_BREAST	1	1	0.1684	TRUE	0	6	0	1	6	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	12	2	MTND4P12	1966	chr5:134262761:-	MTATP8P1	5439	chr1:568976:+	INCL_NON_REF_SPLICE	NO	2	0	0.88	1	0.1555	0.0259	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	0.88	1	0.1814	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MRPL48--GAB2	9	7	MRPL48	6026	chr11:73519395:+	GAB2	25376	chr11:77991947:-	ONLY_REF_SPLICE	YES	28	3	0.36	0.84	0.1166	0.0907	{Klijn_CCL:Breast=1},MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	MDAMB175VII_BREAST	0.36	0.84	0.2073	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	RSF1--TENM4	8	5	RSF1	3931	chr11:77475643:-	TENM4	63794	chr11:78516537:-	ONLY_REF_SPLICE	YES	33	22	0.28	0.37	0.1037	0.0648	RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	MDAMB175VII_BREAST	0.28	0.37	0.1685	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	TRNT1--CNTN4	9	1	TRNT1	8754	chr3:3182332:+	CNTN4	30579	chr3:2861170:+	ONLY_REF_SPLICE	YES	37	1	0.21	0.91	0.1166	0.013	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[68955],TRNT1->chr3:3168600-3192563:+,tRNA_nucleotidyl_transferase,_CCA-adding,_1,CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4	MDAMB175VII_BREAST	0.21	0.91	0.1296	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	8	1	MTND4P12	2007	chr5:134262720:-	MTATP8P1	5486	chr1:569023:+	INCL_NON_REF_SPLICE	YES	3	2	0.75	0.82	0.1037	0.013	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	0.75	0.82	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MRPL48--GAB2	6	8	MRPL48	6026	chr11:73519395:+	GAB2	22090	chr11:78075149:-	ONLY_REF_SPLICE	YES	28	1	0.33	0.93	0.0777	0.1037	{Klijn_CCL:Breast=1},MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	MDAMB175VII_BREAST	0.33	0.93	0.1814	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	C7orf50--ZFAND2A	5	10	C7orf50	3078	chr7:1166893:-	ZFAND2A	17237	chr7:1200120:-	ONLY_REF_SPLICE	YES	157	0	0.09	1	0.0648	0.1296	LOCAL_REARRANGEMENT:-:[13811],C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,ZFAND2A->chr7:1191707-1200395:-,zinc_finger_AN1-type_containing_2A	MDAMB175VII_BREAST	0.09	1	0.1944	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	7	0	MTND4P12	1828	chr5:134262899:-	MTATP8P1	5484	chr1:569021:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0907	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	0.0907	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	RP11-499F3.2--TYW1	7	0	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0907	0	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	MDAMB175VII_BREAST	1	1	0.0907	TRUE	1	3	0	7	3	TRUE	ACH-000759
MDAMB175VII_BREAST	TPCN2--RSF1	5	7	TPCN2	4647	chr11:68825162:+	RSF1	34154	chr11:77436744:-	ONLY_REF_SPLICE	YES	68	36	0.15	0.25	0.0648	0.0907	{Klijn_CCL:Breast=1},TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1	MDAMB175VII_BREAST	0.15	0.25	0.1555	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	6	1	MTND4P12	1993	chr5:134262734:-	MTATP8P1	5468	chr1:569005:+	INCL_NON_REF_SPLICE	YES	1	2	0.88	0.78	0.0777	0.013	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	0.78	0.88	0.0907	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	6	0	MTND4P12	1213	chr5:134263514:-	MTATP8P1	5484	chr1:569021:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0777	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	0.0777	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	5	3	MTND4P12	1974	chr5:134262753:-	MTATP8P1	5447	chr1:568984:+	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0648	0.0389	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	0.89	1	0.1037	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	UPK3B--PMS2P10	3	11	UPK3B	5528	chr7:76144473:+	PMS2P10	15953	chr7:74921967:-	INCL_NON_REF_SPLICE	YES	1281	6	0.01	0.7	0.0389	0.1425	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P10->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_10,chr7:74916804-74928928:-	MDAMB175VII_BREAST	0.01	0.7	0.1814	TRUE	0	15	0	1	15	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	5	2	MTND4P12	2003	chr5:134262724:-	MTATP8P1	5478	chr1:569015:+	INCL_NON_REF_SPLICE	YES	2	3	0.78	0.7	0.0648	0.0259	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	0.7	0.78	0.0907	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	5	0	MTND4P12	1281	chr5:134263446:-	MTATP8P1	5480	chr1:569017:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0648	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MRPL48--GAB2	3	7	MRPL48	6026	chr11:73519395:+	GAB2	24299	chr11:78029265:-	ONLY_REF_SPLICE	YES	28	2	0.26	0.83	0.0389	0.0907	{Klijn_CCL:Breast=1},MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	MDAMB175VII_BREAST	0.26	0.83	0.1296	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	LGALS3BP--KRT18	3	0	LGALS3BP	4113	chr17:76972107:-	KRT18	11877	chr12:53342918:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	MDAMB175VII_BREAST	1	1	0.0389	TRUE	0	0	0	9	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	3	0	MTND4P12	1773	chr5:134262954:-	MTATP8P1	5480	chr1:569017:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	3	0	MTND4P12	1467	chr5:134263260:-	MTATP8P1	5484	chr1:569021:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MRPL48--GAB2	1	5	MRPL48	4983	chr11:73516124:+	GAB2	24299	chr11:78029265:-	ONLY_REF_SPLICE	YES	35	2	0.15	0.75	0.013	0.0648	{Klijn_CCL:Breast=1},MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	MDAMB175VII_BREAST	0.15	0.75	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	RP3-510D11.1--YWHAE	2	0	RP3-510D11.1	3450	chr1:9242066:-	YWHAE	10030	chr17:1268352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	RP3-510D11.1->chr1:9242066-9262678:-,YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon	MDAMB175VII_BREAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	WWOX--VAT1L	2	0	WWOX	10605	chr16:78198186:+	VAT1L	36619	chr16:77896645:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	MDAMB175VII_BREAST	1	1	0.0259	TRUE	0	0	0	2	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MRPL48--GAB2	1	3	MRPL48	1677	chr11:73499037:+	GAB2	22090	chr11:78075149:-	ONLY_REF_SPLICE	YES	6	1	0.4	0.8	0.013	0.0389	{Klijn_CCL:Breast=1},MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	MDAMB175VII_BREAST	0.4	0.8	0.0519	TRUE	0	0	0	1	0	TRUE	ACH-000759
786O_KIDNEY	MICAL2--PARVA	230	254	MICAL2	44515	chr11:12281444:+	PARVA	61348	chr11:12518005:+	ONLY_REF_SPLICE	YES	432	226	0.53	0.68	2.9871	3.2988	{Klijn_CCL:Kidney=1},MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2,PARVA->chr11:12398732-12552348:+,parvin_alpha	786O_KIDNEY	0.53	0.68	6.2859	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	PALLD--VMP1	95	113	PALLD	19548	chr4:169633074:+	VMP1	56575	chr17:57915656:+	ONLY_REF_SPLICE	YES	28	638	0.88	0.25	1.2338	1.4676	{Klijn_CCL:Kidney=1},PALLD->chr4:169418217-169849608:+,palladin,_cytoskeletal_associated_protein,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	786O_KIDNEY	0.25	0.88	2.7014	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	NAA25--RP11-956E11.1	31	39	NAA25	3594	chr12:112530855:-	RP11-956E11.1	36862	chr12:69853297:+	ONLY_REF_SPLICE	YES	102	1	0.41	0.99	0.4026	0.5065	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,RP11-956E11.1->chr12:69843250-69854504:+	786O_KIDNEY	0.41	0.99	0.9091	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	NAA25--RP11-956E11.1	9	40	NAA25	3594	chr12:112530855:-	RP11-956E11.1	35784	chr12:69843391:+	INCL_NON_REF_SPLICE	YES	102	0	0.32	1	0.1169	0.5195	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,RP11-956E11.1->chr12:69843250-69854504:+	786O_KIDNEY	0.32	1	0.6364	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	FRS2--HECTD4	11	14	FRS2	6634	chr12:69925836:+	HECTD4	67962	chr12:112657293:-	ONLY_REF_SPLICE	YES	39	11	0.39	0.69	0.1429	0.1818	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-	786O_KIDNEY	0.39	0.69	0.3247	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	FRS2--HECTD4	8	17	FRS2	7702	chr12:69931763:+	HECTD4	67962	chr12:112657293:-	ONLY_REF_SPLICE	YES	42	11	0.37	0.69	0.1039	0.2208	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-	786O_KIDNEY	0.37	0.69	0.3247	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	NAA25--RP11-956E11.1	12	0	NAA25	1307	chr12:112546520:-	RP11-956E11.1	36862	chr12:69853297:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1558	0	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,RP11-956E11.1->chr12:69843250-69854504:+	786O_KIDNEY	1	1	0.1558	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	MYH9--PLCB1	3	0	MYH9	31547	chr22:36689867:-	PLCB1	84031	chr20:8862258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	786O_KIDNEY	1	1	0.039	TRUE	0	0	0	2	0	TRUE	ACH-000649
786O_KIDNEY	CSNK2A1--CHST3	2	0	CSNK2A1	1150	chr20:524316:-	CHST3	26280	chr10:73765494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,CHST3->carbohydrate_(chondroitin_6)_sulfotransferase_3,chr10:73724123-73773322:+	786O_KIDNEY	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	MET--GNAS	2	0	MET	1188	chr7:116312631:+	GNAS	46166	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	786O_KIDNEY	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	SGMS1--C9orf3	2	0	SGMS1	2457	chr10:52383467:-	C9orf3	60629	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	SGMS1->Oncogene{Bushman},chr10:52065360-52384923:-,sphingomyelin_synthase_1,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	786O_KIDNEY	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	ST3GAL4--FBXO4	2	0	ST3GAL4	12088	chr11:126279306:+	FBXO4	19735	chr5:41927115:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ST3GAL4->ST3_beta-galactoside_alpha-2,3-sialyltransferase_4,chr11:126225535-126310239:+,FBXO4->F-box_protein_4,chr5:41925356-41941845:+	786O_KIDNEY	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	UNKL--UBE2I	2	0	UNKL	20367	chr16:1428915:-	UBE2I	39740	chr16:1364021:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_INVERSION:-:+:[36187],UNKL->chr16:1413206-1464752:-,unkempt_family_like_zinc_finger,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	786O_KIDNEY	1	1	0.026	TRUE	0	0	0	2	0	TRUE	ACH-000649
786O_KIDNEY	ZFP28--MAN2B2	2	0	ZFP28	7069	chr19:57061974:+	MAN2B2	35866	chr4:6621654:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ZFP28->ZFP28_zinc_finger_protein,chr19:57050317-57068169:+,MAN2B2->chr4:6576902-6625089:+,mannosidase_alpha_class_2B_member_2	786O_KIDNEY	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	NAA25--FRS2	1	1	NAA25	1307	chr12:112546520:-	FRS2	40138	chr12:69924645:+	ONLY_REF_SPLICE	YES	6	39	0.25	0.05	0.013	0.013	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2	786O_KIDNEY	0.05	0.25	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000649
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD97--NOL6	47	22	CD97	9444	chr19:14512572:+	NOL6	23978	chr9:33468420:-	ONLY_REF_SPLICE	YES	55	81	0.56	0.46	0.5707	0.2672	CD97->Oncogene{Bushman},chr19:14491313-14519537:+,NOL6->chr9:33461439-33473928:-,nucleolar_protein_6	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.56	0.8379	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MYL6	42	0	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.51	0	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.51	TRUE	0	0	0	8	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	2	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0364	0.0243	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.0607	TRUE	0	3	0	7	3	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BLOC1S1--ENO3	3	0	BLOC1S1	3013	chr12:56112917:+	ENO3	7241	chr17:4851660:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	BLOC1S1->biogenesis_of_lysosomal_organelles_complex_1_subunit_1,chr12:56109820-56113871:+,ENO3->chr17:4851387-4860426:+,enolase_3	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMC3--PDCD4	3	0	SMC3	14888	chr10:112352981:+	PDCD4	30091	chr10:112640991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	SMC3->chr10:112327449-112364394:+,structural_maintenance_of_chromosomes_3,PDCD4->Oncogene{Bushman},chr10:112631565-112659764:+,programmed_cell_death_4_(neoplastic_transformation_inhibitor)	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0364	TRUE	0	2	0	2	1	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALG11--ATP7B	2	0	ALG11	1065	chr13:52586598:+	ATP7B	14220	chr13:52549304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_INVERSION:+:-:[904],ALG11->ALG11,_alpha-1,2-mannosyltransferase,chr13:52586534-52603800:+,ATP7B->ATPase_copper_transporting_beta,chr13:52506809-52585630:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	2	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATF7IP2--U2AF1	2	0	ATF7IP2	4240	chr16:10479979:+	U2AF1	36867	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ATF7IP2->activating_transcription_factor_7_interacting_protein_2,chr16:10420291-10577495:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C22orf34--PARVB	2	0	C22orf34	1138	chr22:50051053:-	PARVB	28662	chr22:44489808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	C22orf34->chr22:49808176-50051190:-,chromosome_22_open_reading_frame_34,PARVB->Oncogene{Bushman},chr22:44395091-44568829:+,parvin_beta	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KDM1B--DEK	2	0	KDM1B	2698	chr6:18160213:+	DEK	35250	chr6:18237747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_INVERSION:+:-:[15],KDM1B->chr6:18155560-18224084:+,lysine_demethylase_1B,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KNTC1--ANAPC5	2	0	KNTC1	1106	chr12:123011898:+	ANAPC5	68366	chr12:121783834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1,ANAPC5->anaphase_promoting_complex_subunit_5,chr12:121746048-121837699:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR1--RIMKLB	2	0	NCOR1	16332	chr17:16046920:-	RIMKLB	66999	chr12:8866407:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1,RIMKLB->chr12:8834196-8935691:+,ribosomal_modification_protein_rimK-like_family_member_B	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKAR1A--NLRC3	2	0	PRKAR1A	1363	chr17:66508283:+	NLRC3	33543	chr16:3598753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	PRKAR1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:66507921-66547460:+,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_alpha,NLRC3->NLR_family,_CARD_domain_containing_3,chr16:3589033-3627401:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTBP2--LRRC8D	2	0	PTBP2	1208	chr1:97187428:+	LRRC8D	32174	chr1:90309197:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,LRRC8D->chr1:90286573-90402170:+,leucine-rich_repeat_containing_8_family_member_D	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PWP2--CUL4A	2	0	PWP2	2258	chr21:45528977:+	CUL4A	31137	chr13:113891137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	PWP2->PWP2_periodic_tryptophan_protein_homolog_(yeast),chr21:45527171-45551063:+,CUL4A->chr13:113862552-113919399:+,cullin_4A	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--HMGB1	2	0	RCC1	2175	chr1:28834672:+	HMGB1	23625	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	6	0	3	4	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC22C--XPO6	2	0	SEC22C	9030	chr3:42610357:-	XPO6	33074	chr16:28181230:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	SEC22C->SEC22_homolog_C,_vesicle_trafficking_protein,chr3:42589461-42642572:-,XPO6->chr16:28109300-28223241:-,exportin_6	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2B--C5orf24	2	0	UBE2B	2542	chr5:133710154:+	C5orf24	15852	chr5:134190588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B,C5orf24->chr5:134181370-134195427:+,chromosome_5_open_reading_frame_24	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR4--EPB42	2	0	WDR4	12544	chr21:44270151:-	EPB42	30303	chr15:43489662:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	WDR4->WD_repeat_domain_4,chr21:44263204-44299678:-,EPB42->chr15:43398423-43513481:-,erythrocyte_membrane_protein_band_4.2	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF527--MRPL3	2	0	ZNF527	4493	chr19:37871274:+	MRPL3	23681	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ZNF527->chr19:37861963-37883968:+,zinc_finger_protein_527,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFX3--KIAA2026	1	3	RFX3	10703	chr9:3301546:-	KIAA2026	37533	chr9:5969436:-	ONLY_REF_SPLICE	YES	17	66	0.19	0.06	0.0121	0.0364	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,KIAA2026->KIAA2026,chr9:5881596-6007901:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.19	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	2	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	9	3	0.25	0.5	0.0121	0.0243	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.5	0.0364	TRUE	0	2	0	11	2	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-188A5.1--KLF8	1	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	9003	chrX:56291613:+	ONLY_REF_SPLICE	YES	2	78	0.5	0.03	0.0121	0.0121	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.5	0.0242	TRUE	1	9	1	5	7	TRUE	ACH-000195
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPAT--RP11-867G2.2	2350	755	NPAT	1143	chr11:108093227:-	RP11-867G2.2	27332	chr11:94250749:+	ONLY_REF_SPLICE	YES	62	0	0.98	1	23.7364	7.626	NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription,RP11-867G2.2->chr11:94245747-94265289:+	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	31.3624	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CAPN13	729	534	USP34	17053	chr2:61566486:-	CAPN13	92190	chr2:30966445:-	ONLY_REF_SPLICE	YES	158	4	0.89	1	7.3633	5.3937	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CAPN13->calpain_13,chr2:30945637-31043408:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	12.757	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPAT--RP11-867G2.2	390	377	NPAT	1143	chr11:108093227:-	RP11-867G2.2	28437	chr11:94261250:+	ONLY_REF_SPLICE	YES	62	135	0.93	0.85	3.9392	3.8079	NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription,RP11-867G2.2->chr11:94245747-94265289:+	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.93	7.7471	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	126	51	LCLAT1	1158	chr2:30670249:+	USP34	41840	chr2:61546462:-	ONLY_REF_SPLICE	YES	4	199	0.98	0.47	1.2727	0.5151	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.98	1.7878	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CAPN13	36	353	USP34	17053	chr2:61566486:-	CAPN13	92234	chr2:30966401:-	ONLY_REF_SPLICE	YES	158	6	0.71	0.98	0.3636	3.5655	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CAPN13->calpain_13,chr2:30945637-31043408:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.98	3.9291	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CAPN13	5	189	USP34	16838	chr2:61566701:-	CAPN13	92190	chr2:30966445:-	ONLY_REF_SPLICE	YES	350	4	0.36	0.98	0.0505	1.909	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CAPN13->calpain_13,chr2:30945637-31043408:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.98	1.9595	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CAPN13	4	170	USP34	16979	chr2:61566560:-	CAPN13	92234	chr2:30966401:-	INCL_NON_REF_SPLICE	YES	144	6	0.55	0.97	0.0404	1.7171	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CAPN13->calpain_13,chr2:30945637-31043408:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.97	1.7575	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPAT--RP11-867G2.2	2	126	NPAT	1143	chr11:108093227:-	RP11-867G2.2	29563	chr11:94265062:+	ONLY_REF_SPLICE	YES	62	261	0.67	0.33	0.0202	1.2727	NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription,RP11-867G2.2->chr11:94245747-94265289:+	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.67	1.2929	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	15	68	LCLAT1	3703	chr2:30699501:+	USP34	41840	chr2:61546462:-	ONLY_REF_SPLICE	YES	9	199	0.9	0.29	0.1515	0.6868	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.9	0.8383	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	12	65	LCLAT1	2469	chr2:30682588:+	USP34	41840	chr2:61546462:-	ONLY_REF_SPLICE	YES	9	199	0.9	0.28	0.1212	0.6565	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.9	0.7777	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	4	69	LCLAT1	4784	chr2:30712106:+	USP34	41840	chr2:61546462:-	ONLY_REF_SPLICE	YES	9	199	0.89	0.27	0.0404	0.6969	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.89	0.7373	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CAPN13	1	73	USP34	15722	chr2:61570950:-	CAPN13	92190	chr2:30966445:-	ONLY_REF_SPLICE	YES	484	4	0.13	0.95	0.0101	0.7373	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CAPN13->calpain_13,chr2:30945637-31043408:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.95	0.7474	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	2	59	LCLAT1	1179	chr2:30670270:+	USP34	41840	chr2:61546462:-	ONLY_REF_SPLICE	YES	13	199	0.82	0.23	0.0202	0.5959	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.82	0.6161	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CAPN13	1	53	USP34	15722	chr2:61570950:-	CAPN13	92234	chr2:30966401:-	ONLY_REF_SPLICE	YES	484	6	0.1	0.9	0.0101	0.5353	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CAPN13->calpain_13,chr2:30945637-31043408:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.9	0.5454	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	3	7	LCLAT1	1158	chr2:30670249:+	USP34	44109	chr2:61542109:-	ONLY_REF_SPLICE	YES	4	211	0.71	0.05	0.0303	0.0707	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.71	0.101	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TBCA	3	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0303	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0303	TRUE	0	3	0	7	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC009403.2--EEF2K	2	0	AC009403.2	2738	chr7:155436162:-	EEF2K	22957	chr16:22284947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	AC009403.2->chr7:155403925-155437899:-,EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC64--GCN1L1	2	0	CCDC64	3944	chr12:120436540:+	GCN1L1	21682	chr12:120628203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[32709],CCDC64->chr12:120427673-120532298:+,GCN1L1->chr12:120565007-120632513:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC88A--RTN4	2	0	CCDC88A	2106	chr2:55645952:-	RTN4	62662	chr2:55214834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	1	0	3	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--PAPD5	2	0	CPSF6	11046	chr12:69656342:+	PAPD5	37299	chr16:50268837:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PAPD5->PAP_associated_domain_containing_5,chr16:50186829-50269221:+	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--EML6	2	0	IGLL5	1480	chr22:23230439:+	EML6	10096	chr2:55040369:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARK2--SMAD2	2	0	MARK2	1633	chr11:63607032:+	SMAD2	30216	chr18:45423180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2,SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2J4--C1orf50	2	0	POLR2J4	11429	chr7:44005466:-	C1orf50	26351	chr1:43239234:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,C1orf50->chr1:43232940-43263968:+,chromosome_1_open_reading_frame_50	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASGRP3--C2orf74	2	0	RASGRP3	31116	chr2:33784097:+	C2orf74	39967	chr2:61391489:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RASGRP3->RAS_guanyl_releasing_protein_3,chr2:33661391-33789817:+,C2orf74->chr2:61372243-61391964:+,chromosome_2_open_reading_frame_74	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ORC5	2	0	RCC1	2175	chr1:28834672:+	ORC5	29100	chr7:103808973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ORC5->chr7:103766788-103848495:-,origin_recognition_complex_subunit_5	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TOP3A--C4orf21	2	0	TOP3A	11482	chr17:18195959:-	C4orf21	32015	chr4:113545032:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	TOP3A->chr17:18174742-18218321:-,topoisomerase_(DNA)_III_alpha,C4orf21->chr4:113460492-113558151:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBC--GNB1	2	0	UBC	2915	chr12:125399133:-	GNB1	11036	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},UBC->chr12:125396150-125401914:-,ubiquitin_C,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--XPO1	2	0	USP34	1120	chr2:61697785:-	XPO1	85339	chr2:61729445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	1	0	4	1	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--XPO1	2	0	USP34	1120	chr2:61697785:-	XPO1	87756	chr2:61725927:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	2	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL1A1--COL4A2	1	1	COL1A1	12735	chr17:48267040:-	COL4A2	31756	chr13:111084672:+	ONLY_REF_SPLICE	NO	49	3	0.04	0.4	0.0101	0.0101	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.4	0.0202	TRUE	0	0	0	2	0	TRUE	ACH-000914
SLR20_KIDNEY	RNASEH2A--RTBDN	908	795	RNASEH2A	3712	chr19:12921218:+	RTBDN	8851	chr19:12945660:-	ONLY_REF_SPLICE	YES	1255	2	0.58	1	10.7307	9.3952	LOCAL_INVERSION:+:-:[11840],RNASEH2A->chr19:12917394-12924452:+,ribonuclease_H2_subunit_A,RTBDN->chr19:12936292-12946242:-,retbindin	SLR20_KIDNEY	0.58	1	20.1259	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	SLC38A2--PTMA	79	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9336	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SLR20_KIDNEY	1	1	0.9336	TRUE	0	0	0	10	0	TRUE	ACH-000127
SLR20_KIDNEY	MAST1--PRDX2	73	5	MAST1	1056	chr19:12944820:+	PRDX2	24055	chr19:12912084:-	ONLY_REF_SPLICE	YES	0	434	1	0.15	0.8627	0.0591	LOCAL_INVERSION:+:-:[32071],MAST1->chr19:12944765-12985765:+,microtubule_associated_serine/threonine_kinase_1,PRDX2->chr19:12907634-12912694:-,peroxiredoxin_2	SLR20_KIDNEY	0.15	1	0.9218	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	ZFR--ZDHHC11B	51	35	ZFR	10785	chr5:32397325:-	ZDHHC11B	35147	chr5:733954:-	ONLY_REF_SPLICE	YES	244	4	0.26	0.96	0.6027	0.4136	ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein,ZDHHC11B->chr5:710475-767067:-,zinc_finger_DHHC-type_containing_11B	SLR20_KIDNEY	0.26	0.96	1.0163	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	EXT2--ALKBH3	19	25	EXT2	12956	chr11:44151688:+	ALKBH3	36715	chr11:43940588:+	ONLY_REF_SPLICE	YES	538	136	0.08	0.24	0.2245	0.2954	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2,ALKBH3->alkB_homolog_3,_alpha-ketoglutarate-dependent_dioxygenase,chr11:43902361-43941816:+	SLR20_KIDNEY	0.08	0.24	0.5199	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	STX5--WDR74	10	21	STX5	6582	chr11:62591638:-	WDR74	13566	chr11:62607131:-	ONLY_REF_SPLICE	YES	194	58	0.14	0.35	0.1182	0.2482	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	SLR20_KIDNEY	0.14	0.35	0.3664	TRUE	0	4	0	1	2	TRUE	ACH-000127
SLR20_KIDNEY	STX5--WDR74	7	23	STX5	6582	chr11:62591638:-	WDR74	13358	chr11:62607339:-	ONLY_REF_SPLICE	YES	194	42	0.13	0.42	0.0827	0.2718	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	SLR20_KIDNEY	0.13	0.42	0.3545	TRUE	0	4	0	1	2	TRUE	ACH-000127
SLR20_KIDNEY	CYFIP2--ZFP3	10	4	CYFIP2	22825	chr5:156747810:+	ZFP3	49738	chr17:4994792:+	ONLY_REF_SPLICE	YES	65	0	0.18	1	0.1182	0.0473	CYFIP2->chr5:156693089-156822606:+,cytoplasmic_FMR1_interacting_protein_2,ZFP3->ZFP3_zinc_finger_protein,chr17:4981543-4999669:+	SLR20_KIDNEY	0.18	1	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	SAMD8--KAT6B	6	1	SAMD8	2395	chr10:76871480:+	KAT6B	35343	chr10:76780340:+	ONLY_REF_SPLICE	YES	2	33	0.78	0.17	0.0709	0.0118	LOCAL_REARRANGEMENT:+:[66964],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B	SLR20_KIDNEY	0.17	0.78	0.0827	TRUE	0	1	0	1	1	TRUE	ACH-000127
SLR20_KIDNEY	HNF1B--RP11-115K3.2	4	4	HNF1B	1706	chr17:36104532:-	RP11-115K3.2	19744	chr17:36233931:-	ONLY_REF_SPLICE	YES	39	9	0.17	0.47	0.0473	0.0473	LOCAL_REARRANGEMENT:-:[82688],HNF1B->HNF1_homeobox_B,chr17:36046435-36105237:-,RP11-115K3.2->chr17:36187925-36244363:-	SLR20_KIDNEY	0.17	0.47	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	RCC1--CTD-2354A18.1	5	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0591	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	SLR20_KIDNEY	1	1	0.0591	TRUE	0	1	0	7	0	TRUE	ACH-000127
SLR20_KIDNEY	ZNF490--RNASEH2A	3	0	ZNF490	1034	chr19:12750879:-	RNASEH2A	18125	chr19:12917822:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	ZNF490->chr19:12688775-12750912:-,zinc_finger_protein_490,RNASEH2A->chr19:12917394-12924452:+,ribonuclease_H2_subunit_A	SLR20_KIDNEY	1	1	0.0355	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	HNF1B--RP11-115K3.2	1	5	HNF1B	1706	chr17:36104532:-	RP11-115K3.2	18689	chr17:36243635:-	ONLY_REF_SPLICE	YES	39	0	0.13	1	0.0118	0.0591	LOCAL_REARRANGEMENT:-:[82688],HNF1B->HNF1_homeobox_B,chr17:36046435-36105237:-,RP11-115K3.2->chr17:36187925-36244363:-	SLR20_KIDNEY	0.13	1	0.0709	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	C1orf63--UBE2R2	2	0	C1orf63	13914	chr1:25571641:-	UBE2R2	21196	chr9:33886879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	SLR20_KIDNEY	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	DANCR--CCDC91	2	0	DANCR	1530	chr4:53579126:+	CCDC91	32061	chr12:28636985:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	SLR20_KIDNEY	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	GADD45GIP1--TRMT1	2	0	GADD45GIP1	1374	chr19:13067677:-	TRMT1	12266	chr19:13218673:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GADD45GIP1->GADD45G_interacting_protein_1,Oncogene{Bushman},chr19:13064972-13068050:-,TRMT1->chr19:13215716-13228381:-,tRNA_methyltransferase_1	SLR20_KIDNEY	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	LIMK1--CEP41	2	0	LIMK1	16954	chr7:73530288:+	CEP41	35782	chr7:130044549:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,CEP41->centrosomal_protein_41,chr7:130033612-130082274:-	SLR20_KIDNEY	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	SUPT5H--IFNL1	2	0	SUPT5H	14387	chr19:39959812:+	IFNL1	25366	chr19:39787445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SUPT5H->SPT5_homolog,_DSIF_elongation_factor_subunit,chr19:39926796-39967310:+,IFNL1->chr19:39786965-39789313:+,interferon,_lambda_1	SLR20_KIDNEY	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000127
IPC298_SKIN	ARMC9--PSMD1	584	471	ARMC9	4785	chr2:232079714:+	PSMD1	57973	chr2:232010954:+	ONLY_REF_SPLICE	YES	339	264	0.76	0.8	9.6993	7.8225	{Klijn_CCL:Skin=3,Other=1,Brain=1},LOCAL_REARRANGEMENT:+:[25719],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1	IPC298_SKIN	0.76	0.8	17.5218	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	ARMC9--PSMD1	3	472	ARMC9	4924	chr2:232079853:+	PSMD1	57973	chr2:232010954:+	ONLY_REF_SPLICE	YES	325	264	0.59	0.64	0.0498	7.8391	{Klijn_CCL:Skin=3,Other=1,Brain=1},LOCAL_REARRANGEMENT:+:[25719],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1	IPC298_SKIN	0.59	0.64	7.8889	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	ZNF573--SYT3	83	33	ZNF573	13116	chr19:38260645:-	SYT3	33747	chr19:51126012:-	ONLY_REF_SPLICE	YES	2	1	0.98	0.99	1.3785	0.5481	ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573,SYT3->chr19:51124564-51171651:-,synaptotagmin_3	IPC298_SKIN	0.98	0.99	1.9266	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	ARMC9--PSMD1	5	170	ARMC9	3614	chr2:232072965:+	PSMD1	57973	chr2:232010954:+	ONLY_REF_SPLICE	YES	614	264	0.22	0.4	0.083	2.8234	{Klijn_CCL:Skin=3,Other=1,Brain=1},LOCAL_REARRANGEMENT:+:[25719],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1	IPC298_SKIN	0.22	0.4	2.9064	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	ZNF140--ASRGL1	31	17	ZNF140	4724	chr12:133660147:+	ASRGL1	16116	chr11:62124459:+	ONLY_REF_SPLICE	YES	17	22	0.74	0.69	0.5149	0.2823	ZNF140->chr12:133656424-133684130:+,zinc_finger_protein_140,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	IPC298_SKIN	0.69	0.74	0.7972	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	OIP5-AS1--ARFGAP2	22	32	OIP5-AS1	18654	chr15:41601039:+	ARFGAP2	29469	chr11:47189802:-	INCL_NON_REF_SPLICE	YES	5	40	0.92	0.57	0.3654	0.5315	OIP5-AS1->OIP5_antisense_RNA_1,chr15:41576188-41601901:+,ARFGAP2->ADP_ribosylation_factor_GTPase_activating_protein_2,chr11:47185848-47198676:-	IPC298_SKIN	0.57	0.92	0.8969	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	CEP89--CTC-360P9.1	13	11	CEP89	14040	chr19:33422335:-	CTC-360P9.1	29501	chr19:32378832:-	ONLY_REF_SPLICE	YES	20	0	0.55	1	0.2159	0.1827	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,CTC-360P9.1->chr19:32377610-32399190:-	IPC298_SKIN	0.55	1	0.3986	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	DDX11--ALK	10	14	DDX11	11712	chr12:31244805:+	ALK	48589	chr2:29448431:-	ONLY_REF_SPLICE	YES	57	0	0.3	1	0.1661	0.2325	DDX11->DEAD/H-box_helicase_11,chr12:31226779-31257725:+,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	IPC298_SKIN	0.3	1	0.3986	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	MYO9B--TMOD2	10	0	MYO9B	1094	chr19:17186684:+	TMOD2	54724	chr15:52090394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1661	0	MYO9B->chr19:17186591-17325346:+,myosin_IXB,TMOD2->chr15:52043758-52108565:+,tropomodulin_2	IPC298_SKIN	1	1	0.1661	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	ZNF140--ASRGL1	4	19	ZNF140	7527	chr12:133677639:+	ASRGL1	16116	chr11:62124459:+	ONLY_REF_SPLICE	YES	22	22	0.51	0.51	0.0664	0.3156	ZNF140->chr12:133656424-133684130:+,zinc_finger_protein_140,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	IPC298_SKIN	0.51	0.51	0.382	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	ZNF573--SYT3	3	22	ZNF573	11557	chr19:38262204:-	SYT3	33747	chr19:51126012:-	ONLY_REF_SPLICE	YES	5	1	0.83	0.96	0.0498	0.3654	ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573,SYT3->chr19:51124564-51171651:-,synaptotagmin_3	IPC298_SKIN	0.83	0.96	0.4152	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	OIP5-AS1--ARFGAP2	3	19	OIP5-AS1	18437	chr15:41600822:+	ARFGAP2	29469	chr11:47189802:-	ONLY_REF_SPLICE	YES	3	40	0.88	0.35	0.0498	0.3156	OIP5-AS1->OIP5_antisense_RNA_1,chr15:41576188-41601901:+,ARFGAP2->ADP_ribosylation_factor_GTPase_activating_protein_2,chr11:47185848-47198676:-	IPC298_SKIN	0.35	0.88	0.3654	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	ZNF71--CTC-459F4.3	4	11	ZNF71	2250	chr19:57112959:+	CTC-459F4.3	23024	chr19:28391697:+	ONLY_REF_SPLICE	YES	29	0	0.34	1	0.0664	0.1827	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,CTC-459F4.3->chr19:28284371-28409771:+	IPC298_SKIN	0.34	1	0.2491	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	AP003900.6--AC008132.1	4	7	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	2	1	0.85	0.92	0.0664	0.1163	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	IPC298_SKIN	0.85	0.92	0.1827	TRUE	0	0	0	16	0	TRUE	ACH-000915
IPC298_SKIN	MMS19--EXOC6	3	7	MMS19	1522	chr10:99258030:-	EXOC6	49961	chr10:94817980:+	ONLY_REF_SPLICE	YES	65	27	0.13	0.27	0.0498	0.1163	MMS19->MMS19_homolog,_cytosolic_iron-sulfur_assembly_component,chr10:99218081-99258551:-,EXOC6->chr10:94590935-94819250:+,exocyst_complex_component_6	IPC298_SKIN	0.13	0.27	0.1661	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	ZNF71--AC022153.1	4	3	ZNF71	2250	chr19:57112959:+	AC022153.1	16482	chr19:28447110:+	ONLY_REF_SPLICE	YES	29	0	0.19	1	0.0664	0.0498	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,AC022153.1->chr19:28393503-28475651:+	IPC298_SKIN	0.19	1	0.1162	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	AP003900.6--AC008132.1	1	11	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	2	1	0.86	0.92	0.0166	0.1827	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	IPC298_SKIN	0.86	0.92	0.1993	TRUE	0	0	0	11	0	TRUE	ACH-000915
IPC298_SKIN	SDCBP--PTTG1	2	0	SDCBP	4943	chr8:59477625:+	PTTG1	17826	chr5:159849309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	IPC298_SKIN	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	AP003900.6--AC008132.1	1	3	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	6	0.67	0.4	0.0166	0.0498	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	IPC298_SKIN	0.4	0.67	0.0664	TRUE	0	0	0	13	0	TRUE	ACH-000915
IPC298_SKIN	CEP89--CTC-360P9.1	1	3	CEP89	14040	chr19:33422335:-	CTC-360P9.1	30449	chr19:32377884:-	ONLY_REF_SPLICE	YES	20	2	0.17	0.67	0.0166	0.0498	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,CTC-360P9.1->chr19:32377610-32399190:-	IPC298_SKIN	0.17	0.67	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	FAM21C--ZNF248	1	3	FAM21C	18194	chr10:46261258:+	ZNF248	35620	chr10:38145265:-	ONLY_REF_SPLICE	NO	53	19	0.07	0.17	0.0166	0.0498	FAM21C->chr10:46222648-46288409:+,family_with_sequence_similarity_21_member_C,ZNF248->chr10:38091751-38147034:-,zinc_finger_protein_248	IPC298_SKIN	0.07	0.17	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000915
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSNK1G2--DOT1L	27	3	CSNK1G2	1230	chr19:1941417:+	DOT1L	17397	chr19:2180712:+	ONLY_REF_SPLICE	YES	1	12	0.97	0.71	0.3551	0.0395	CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.97	0.3946	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BICD1--OVCH1	21	11	BICD1	4185	chr12:32369393:+	OVCH1	34533	chr12:29630411:-	INCL_NON_REF_SPLICE	YES	32	0	0.5	1	0.2762	0.1447	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,OVCH1->chr12:29565407-29650619:-,ovochymase_1	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.4209	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STK38L--FAR2	9	8	STK38L	8122	chr12:27455121:+	FAR2	29555	chr12:29423345:+	ONLY_REF_SPLICE	YES	149	0	0.1	1	0.1184	0.1052	STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like,FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.2236	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027612.3--AP000345.1	10	3	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	20	0	0.39	1	0.1315	0.0395	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.171	TRUE	0	0	0	11	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	6	5	AP003900.6	1122	chr21:11169841:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	10	0	0.52	1	0.0789	0.0658	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	1	0.1447	TRUE	0	0	0	11	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027612.3--AP000345.1	6	3	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0789	0.0395	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1184	TRUE	0	0	0	11	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	APBA3--TJP3	6	3	APBA3	2777	chr19:3759687:-	TJP3	30426	chr19:3750136:+	ONLY_REF_SPLICE	YES	32	8	0.22	0.53	0.0789	0.0395	LOCAL_INVERSION:-:+:[6],APBA3->amyloid_beta_precursor_protein_binding_family_A_member_3,chr19:3750817-3761697:-,TJP3->chr19:3708107-3750811:+,tight_junction_protein_3	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.53	0.1184	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2C--CTBP2P1	5	1	KMT2C	8616	chr7:151970790:-	CTBP2P1	74892	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	48	0	0.11	1	0.0658	0.0132	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.079	TRUE	0	1	0	4	1	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	3	5	AP003900.6	1122	chr21:11169841:+	AC011718.2	10127	chr22:20656897:-	INCL_NON_REF_SPLICE	YES	10	0	0.44	1	0.0395	0.0658	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.1053	TRUE	0	0	0	11	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	3	0	ANP32A	10566	chr15:69076736:-	PTMA	24574	chr2:232577162:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STK38L--FAR2	1	8	STK38L	8122	chr12:27455121:+	FAR2	26652	chr12:29324311:+	ONLY_REF_SPLICE	YES	149	0	0.06	1	0.0132	0.1052	STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like,FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.1184	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MFI2--MYC	2	0	MFI2	19362	chr3:196730772:-	MYC	28244	chr8:128750497:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	MFI2->chr3:196715492-196756687:-,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SNHG17	2	0	RCC1	2175	chr1:28834672:+	SNHG17	26276	chr20:37050888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNHG17->chr20:37049235-37063996:-,small_nucleolar_RNA_host_gene_17	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0263	TRUE	0	1	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD5--CDC42SE2	2	0	SMAD5	1118	chr5:135468651:+	CDC42SE2	31711	chr5:130721236:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	SMAD5->SMAD_family_member_5,chr5:135468534-135524435:+,CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSNK1G2--DOT1L	1	3	CSNK1G2	2379	chr19:1942612:+	DOT1L	17397	chr19:2180712:+	ONLY_REF_SPLICE	YES	1	12	0.8	0.25	0.0132	0.0395	CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.8	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000157
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UAP1--IGJ	19	0	UAP1	1247	chr1:162531569:+	IGJ	19183	chr4:71532237:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2671	0	UAP1->UDP-N-acetylglucosamine_pyrophosphorylase_1,chr1:162531323-162569627:+,IGJ->chr4:71521258-71547534:-	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2671	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABI1--IRAK3	8	3	ABI1	9263	chr10:27054147:-	IRAK3	23843	chr12:66597491:+	ONLY_REF_SPLICE	YES	50	0	0.18	1	0.1124	0.0422	{Klijn_CCL:Lymphoid=1},ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,IRAK3->chr12:66582659-66648402:+,interleukin_1_receptor_associated_kinase_3	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.1546	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC27A5--ZBTB45	5	0	SLC27A5	12854	chr19:58991926:-	ZBTB45	20317	chr19:59029040:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	LOCAL_REARRANGEMENT:-:[1117],SLC27A5->chr19:58990879-59023780:-,solute_carrier_family_27_member_5,ZBTB45->chr19:59024897-59050278:-,zinc_finger_and_BTB_domain_containing_45	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0703	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZCCHC10--HSPA4	4	1	ZCCHC10	2178	chr5:132358533:-	HSPA4	13947	chr5:132400672:+	ONLY_REF_SPLICE	YES	29	135	0.15	0.04	0.0562	0.0141	LOCAL_INVERSION:-:+:[25358],ZCCHC10->chr5:132332677-132362296:-,zinc_finger_CCHC-type_containing_10,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.15	0.0703	TRUE	0	0	0	2	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--PICALM	3	0	CTC-459F4.3	1147	chr19:28284517:+	PICALM	16683	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0422	0	CTC-459F4.3->chr19:28284371-28409771:+,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGJ--RP11-278C7.1	3	0	IGJ	5243	chr4:71527894:-	RP11-278C7.1	11831	chr12:32879570:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	IGJ->chr4:71521258-71547534:-,RP11-278C7.1->chr12:32879317-32880321:-	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABI1--IRAK3	2	1	ABI1	9263	chr10:27054147:-	IRAK3	25026	chr12:66603236:+	ONLY_REF_SPLICE	YES	50	1	0.06	0.75	0.0281	0.0141	{Klijn_CCL:Lymphoid=1},ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,IRAK3->chr12:66582659-66648402:+,interleukin_1_receptor_associated_kinase_3	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.75	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--ARNT	2	0	ANP32E	1424	chr1:150208081:-	ARNT	16890	chr1:150830936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,ARNT->Oncogene{Bushman},aryl_hydrocarbon_receptor_nuclear_translocator,chr1:150782181-150849244:-	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BTBD19--TANGO2	2	0	BTBD19	4735	chr1:45278194:+	TANGO2	22888	chr22:20048697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	BTBD19->BTB_domain_containing_19,Oncogene{Bushman},chr1:45274154-45281257:+,TANGO2->chr22:20004537-20053449:+,transport_and_golgi_organization_2_homolog	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--C12orf23	2	0	CPSF6	11046	chr12:69656342:+	C12orf23	24908	chr12:107364883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C12orf23->chr12:107349497-107372556:+	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--CDK10	2	0	PROSC	2996	chr8:37623873:+	CDK10	16077	chr16:89753997:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--GTPBP2	2	0	RABGAP1L	14961	chr1:174274265:+	GTPBP2	56348	chr6:43594685:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,GTPBP2->GTP_binding_protein_2,chr6:43573053-43596899:-	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RREB1--TXNDC5	2	0	RREB1	1464	chr6:7108293:+	TXNDC5	37525	chr6:7904956:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	RREB1->Oncogene{Bushman},chr6:7107830-7252213:+,ras_responsive_element_binding_protein_1,TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000564
ECC12_STOMACH	SBF2--RNF141	208	21	SBF2	2279	chr11:10215449:-	RNF141	67634	chr11:10546920:-	ONLY_REF_SPLICE	YES	9	43	0.96	0.84	1.6288	0.1645	SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,RNF141->chr11:10533225-10562777:-,ring_finger_protein_141	ECC12_STOMACH	0.84	0.96	1.7933	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	RPL9--AFAP1	119	40	RPL9	3543	chr4:39458026:-	AFAP1	10330	chr4:7873807:-	ONLY_REF_SPLICE	YES	673	3	0.19	0.98	0.9319	0.3132	RPL9->chr4:39455744-39460568:-,ribosomal_protein_L9,AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-	ECC12_STOMACH	0.19	0.98	1.2451	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	ZNF490--SYCE2	100	33	ZNF490	7062	chr19:12719972:-	SYCE2	20933	chr19:13015480:-	ONLY_REF_SPLICE	YES	5	10	0.96	0.93	0.7831	0.2584	ZNF490->chr19:12688775-12750912:-,zinc_finger_protein_490,SYCE2->chr19:13009600-13030090:-,synaptonemal_complex_central_element_protein_2	ECC12_STOMACH	0.93	0.96	1.0415	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	PAPSS2--MINPP1	79	36	PAPSS2	8343	chr10:89481527:+	MINPP1	25393	chr10:89311839:+	ONLY_REF_SPLICE	YES	81	111	0.59	0.51	0.6186	0.2819	PAPSS2->3'-phosphoadenosine_5'-phosphosulfate_synthase_2,chr10:89419370-89507462:+,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	ECC12_STOMACH	0.51	0.59	0.9005	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	PAPSS2--MINPP1	67	32	PAPSS2	7328	chr10:89475600:+	MINPP1	25393	chr10:89311839:+	ONLY_REF_SPLICE	YES	63	111	0.61	0.47	0.5247	0.2506	PAPSS2->3'-phosphoadenosine_5'-phosphosulfate_synthase_2,chr10:89419370-89507462:+,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	ECC12_STOMACH	0.47	0.61	0.7753	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	DUSP10--BAGE2	71	15	DUSP10	1196	chr1:221915323:-	BAGE2	16957	chr21:11058323:-	ONLY_REF_SPLICE	YES	7	1	0.92	0.99	0.556	0.1175	DUSP10->Oncogene{Bushman},chr1:221874766-221915518:-,dual_specificity_phosphatase_10,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	ECC12_STOMACH	0.92	0.99	0.6735	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	RPL9--AFAP1	58	15	RPL9	2363	chr4:39459206:-	AFAP1	10330	chr4:7873807:-	ONLY_REF_SPLICE	YES	825	3	0.08	0.96	0.4542	0.1175	RPL9->chr4:39455744-39460568:-,ribosomal_protein_L9,AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-	ECC12_STOMACH	0.08	0.96	0.5717	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	NCK2--GCM1	55	24	NCK2	3175	chr2:106433070:+	GCM1	13659	chr6:53010566:-	ONLY_REF_SPLICE	YES	207	0	0.28	1	0.4307	0.1879	NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+,GCM1->chr6:52991762-53013627:-,glial_cells_missing_homolog_1	ECC12_STOMACH	0.28	1	0.6186	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	WASF3--ASTN1	54	25	WASF3	4808	chr13:27239299:+	ASTN1	41102	chr1:176863966:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.4229	0.1958	WASF3->WAS_protein_family_member_3,chr13:27131840-27263085:+,ASTN1->astrotactin_1,chr1:176826438-177134109:-	ECC12_STOMACH	0.99	1	0.6187	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	NPEPPS--RPH3AL	43	16	NPEPPS	9229	chr17:45656877:+	RPH3AL	54610	chr17:97076:-	ONLY_REF_SPLICE	YES	129	44	0.31	0.57	0.3367	0.1253	NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+,RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains)	ECC12_STOMACH	0.31	0.57	0.462	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	ACBD6--NBPF3	41	3	ACBD6	1910	chr1:180471180:-	NBPF3	35762	chr1:21801393:+	ONLY_REF_SPLICE	YES	125	11	0.26	0.8	0.3211	0.0235	ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,NBPF3->chr1:21766621-21811498:+,neuroblastoma_breakpoint_family_member_3	ECC12_STOMACH	0.26	0.8	0.3446	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	GPC6--RP11-135J2.4	35	10	GPC6	4326	chr13:94482798:+	RP11-135J2.4	22133	chr1:219260002:-	ONLY_REF_SPLICE	YES	39	0	0.54	1	0.2741	0.0783	GPC6->chr13:93879095-95059655:+,glypican_6,RP11-135J2.4->chr1:219259944-219347303:-	ECC12_STOMACH	0.54	1	0.3524	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	GRM4--NUDT3	26	9	GRM4	4519	chr6:34100755:-	NUDT3	34911	chr6:34263462:-	ONLY_REF_SPLICE	YES	19	157	0.65	0.18	0.2036	0.0705	GRM4->chr6:33989628-34123399:-,glutamate_metabotropic_receptor_4,NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3	ECC12_STOMACH	0.18	0.65	0.2741	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	TTBK2--TP53BP1	20	6	TTBK2	10919	chr15:43120126:-	TP53BP1	49653	chr15:43733781:-	ONLY_REF_SPLICE	YES	12	43	0.68	0.38	0.1566	0.047	TTBK2->chr15:43030932-43213007:-,tau_tubulin_kinase_2,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	ECC12_STOMACH	0.38	0.68	0.2036	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	ALG12--DENND6B	15	16	ALG12	7820	chr22:50297578:-	DENND6B	22241	chr22:50751054:-	INCL_NON_REF_SPLICE	YES	95	49	0.25	0.39	0.1175	0.1253	ALG12->ALG12,_alpha-1,6-mannosyltransferase,chr22:50293877-50312106:-,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	ECC12_STOMACH	0.25	0.39	0.2428	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	GUSBP2--RP11-457M11.5	17	4	GUSBP2	9031	chr6:26846479:-	RP11-457M11.5	15456	chr6:26687347:+	INCL_NON_REF_SPLICE	YES	9	5	0.7	0.81	0.1331	0.0313	GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2,RP11-457M11.5->chr6:26686469-26688192:+	ECC12_STOMACH	0.7	0.81	0.1644	TRUE	1	2	0	3	2	TRUE	ACH-000225
ECC12_STOMACH	CACNA1A--C19orf44	17	2	CACNA1A	1113	chr19:13734692:-	C19orf44	61387	chr19:16611603:+	ONLY_REF_SPLICE	YES	60	1	0.24	0.95	0.1331	0.0157	CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	ECC12_STOMACH	0.24	0.95	0.1488	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	ALG12--DENND6B	14	9	ALG12	7571	chr22:50297827:-	DENND6B	22241	chr22:50751054:-	ONLY_REF_SPLICE	YES	83	49	0.22	0.32	0.1096	0.0705	ALG12->ALG12,_alpha-1,6-mannosyltransferase,chr22:50293877-50312106:-,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	ECC12_STOMACH	0.22	0.32	0.1801	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	PRRX2--RP11-344B5.2	16	0	PRRX2	3853	chr9:132483053:+	RP11-344B5.2	9835	chr9:132047789:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1253	0	PRRX2->Oncogene{Bushman},chr9:132427920-132484875:+,paired_related_homeobox_2,RP11-344B5.2->chr9:132044737-132048007:+	ECC12_STOMACH	1	1	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	SCN8A--SLC4A8	15	1	SCN8A	23977	chr12:52168146:+	SLC4A8	48376	chr12:51834492:+	ONLY_REF_SPLICE	YES	35	18	0.31	0.47	0.1175	0.0078	LOCAL_REARRANGEMENT:+:[81070],SCN8A->chr12:51984050-52206648:+,sodium_voltage-gated_channel_alpha_subunit_8,SLC4A8->chr12:51785101-51902980:+,solute_carrier_family_4_member_8	ECC12_STOMACH	0.31	0.47	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	NBPF15--WASF3	13	4	NBPF15	2950	chr1:148558286:+	WASF3	31659	chr13:27241654:+	ONLY_REF_SPLICE	YES	28	1	0.38	0.94	0.1018	0.0313	NBPF15->chr1:148555979-148596267:+,neuroblastoma_breakpoint_family_member_15,WASF3->WAS_protein_family_member_3,chr13:27131840-27263085:+	ECC12_STOMACH	0.38	0.94	0.1331	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	ALG12--DENND6B	5	16	ALG12	7822	chr22:50297576:-	DENND6B	22241	chr22:50751054:-	INCL_NON_REF_SPLICE	YES	97	49	0.18	0.3	0.0392	0.1253	ALG12->ALG12,_alpha-1,6-mannosyltransferase,chr22:50293877-50312106:-,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	ECC12_STOMACH	0.18	0.3	0.1645	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	PAPSS2--MINPP1	1	32	PAPSS2	7328	chr10:89475600:+	MINPP1	24270	chr10:89306330:+	ONLY_REF_SPLICE	YES	63	124	0.34	0.21	0.0078	0.2506	PAPSS2->3'-phosphoadenosine_5'-phosphosulfate_synthase_2,chr10:89419370-89507462:+,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	ECC12_STOMACH	0.21	0.34	0.2584	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	CASC9--RP11-300E4.2	8	2	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	24	0	0.29	1	0.0626	0.0157	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	ECC12_STOMACH	0.29	1	0.0783	TRUE	0	23	0	19	23	TRUE	ACH-000225
ECC12_STOMACH	GUSBP2--RP11-457M11.5	6	5	GUSBP2	10937	chr6:26839903:-	RP11-457M11.5	15456	chr6:26687347:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.69	0.047	0.0392	GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2,RP11-457M11.5->chr6:26686469-26688192:+	ECC12_STOMACH	0.69	1	0.0862	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	UBE2D2--HAPLN1	6	5	UBE2D2	6963	chr5:139003046:+	HAPLN1	17670	chr5:82969368:-	ONLY_REF_SPLICE	YES	199	1	0.05	0.92	0.047	0.0392	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,HAPLN1->Oncogene{Bushman},chr5:82933624-83017432:-,hyaluronan_and_proteoglycan_link_protein_1	ECC12_STOMACH	0.05	0.92	0.0862	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	DUSP10--BAGE2	2	15	DUSP10	1196	chr1:221915323:-	BAGE2	14854	chr21:11061030:-	ONLY_REF_SPLICE	YES	7	2	0.71	0.89	0.0157	0.1175	DUSP10->Oncogene{Bushman},chr1:221874766-221915518:-,dual_specificity_phosphatase_10,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	ECC12_STOMACH	0.71	0.89	0.1332	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	CASC9--RP11-300E4.2	5	1	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	16	0	0.27	1	0.0392	0.0078	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	ECC12_STOMACH	0.27	1	0.047	TRUE	0	12	0	10	12	TRUE	ACH-000225
ECC12_STOMACH	CUL3--SERPINE2	4	2	CUL3	8875	chr2:225400245:-	SERPINE2	42155	chr2:224866639:-	ONLY_REF_SPLICE	YES	82	3	0.07	0.67	0.0313	0.0157	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2	ECC12_STOMACH	0.07	0.67	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	DUSP10--BAGE2	3	4	DUSP10	1196	chr1:221915323:-	BAGE2	17045	chr21:11058235:-	INCL_NON_REF_SPLICE	YES	7	4	0.5	0.64	0.0235	0.0313	DUSP10->Oncogene{Bushman},chr1:221874766-221915518:-,dual_specificity_phosphatase_10,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	ECC12_STOMACH	0.5	0.64	0.0548	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	NBPF15--WASF3	3	2	NBPF15	1832	chr1:148556810:+	WASF3	31659	chr13:27241654:+	ONLY_REF_SPLICE	YES	50	1	0.09	0.83	0.0235	0.0157	NBPF15->chr1:148555979-148596267:+,neuroblastoma_breakpoint_family_member_15,WASF3->WAS_protein_family_member_3,chr13:27131840-27263085:+	ECC12_STOMACH	0.09	0.83	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	TARBP1--CD5L	2	1	TARBP1	15166	chr1:234573021:-	CD5L	41404	chr1:157809200:-	ONLY_REF_SPLICE	YES	34	0	0.08	1	0.0157	0.0078	TARBP1->TAR_(HIV-1)_RNA_binding_protein_1,chr1:234527059-234614849:-,CD5L->CD5_molecule_like,chr1:157800704-157868046:-	ECC12_STOMACH	0.08	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	DMWD--CDK18	2	0	DMWD	2670	chr19:46294163:-	CDK18	21922	chr1:205496922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	DMWD->chr19:46286205-46296060:-,dystrophia_myotonica,_WD_repeat_containing,CDK18->Oncogene{Bushman},chr1:205473723-205501921:+,cyclin-dependent_kinase_18	ECC12_STOMACH	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	RNF128--CXorf57	2	0	RNF128	3349	chrX:105970627:+	CXorf57	26115	chrX:105905245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	LOCAL_REARRANGEMENT:+:[14352],RNF128->chrX:105937024-106040223:+,ring_finger_protein_128,_E3_ubiquitin_protein_ligase,CXorf57->chrX:105855160-105922672:+,chromosome_X_open_reading_frame_57	ECC12_STOMACH	1	1	0.0157	TRUE	0	1	0	1	1	TRUE	ACH-000225
ECC12_STOMACH	SF3B3--COG4	2	0	SF3B3	1141	chr16:70557831:+	COG4	37503	chr16:70553634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	LOCAL_INVERSION:+:-:[223],SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3,COG4->chr16:70514471-70557468:-,component_of_oligomeric_golgi_complex_4	ECC12_STOMACH	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	TARBP1--CD5L	2	0	TARBP1	14068	chr1:234582549:-	CD5L	41404	chr1:157809200:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	TARBP1->TAR_(HIV-1)_RNA_binding_protein_1,chr1:234527059-234614849:-,CD5L->CD5_molecule_like,chr1:157800704-157868046:-	ECC12_STOMACH	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	TSC1--CAMSAP1	2	0	TSC1	2154	chr9:135810420:-	CAMSAP1	39761	chr9:138719430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	TSC1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:135766735-135820020:-,tuberous_sclerosis_1,CAMSAP1->calmodulin_regulated_spectrin_associated_protein_1,chr9:138700333-138799074:-	ECC12_STOMACH	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	TTBK2--TP53BP1	2	0	TTBK2	8673	chr15:43132558:-	TP53BP1	49653	chr15:43733781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	TTBK2->chr15:43030932-43213007:-,tau_tubulin_kinase_2,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	ECC12_STOMACH	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	CUL3--SERPINE2	1	2	CUL3	12238	chr2:225378241:-	SERPINE2	42155	chr2:224866639:-	ONLY_REF_SPLICE	YES	61	3	0.05	0.5	0.0078	0.0157	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2	ECC12_STOMACH	0.05	0.5	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	NBPF15--WASF3	1	2	NBPF15	1294	chr1:148556272:+	WASF3	31659	chr13:27241654:+	ONLY_REF_SPLICE	NO	46	1	0.06	0.75	0.0078	0.0157	NBPF15->chr1:148555979-148596267:+,neuroblastoma_breakpoint_family_member_15,WASF3->WAS_protein_family_member_3,chr13:27131840-27263085:+	ECC12_STOMACH	0.06	0.75	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	KIF26B--SMYD3	1	1	KIF26B	2699	chr1:245319985:+	SMYD3	55692	chr1:246093239:-	ONLY_REF_SPLICE	YES	3	63	0.4	0.03	0.0078	0.0078	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	ECC12_STOMACH	0.03	0.4	0.0156	TRUE	0	18	0	6	12	TRUE	ACH-000225
ECC12_STOMACH	POU6F2--OASL	1	1	POU6F2	12707	chr7:39247219:+	OASL	33336	chr12:121471546:-	ONLY_REF_SPLICE	NO	5	1	0.29	0.67	0.0078	0.0078	POU6F2->Oncogene{Bushman},POU_class_6_homeobox_2,chr7:39017598-39532694:+,OASL->2'-5'-oligoadenylate_synthetase_like,chr12:121458095-121477045:-	ECC12_STOMACH	0.29	0.67	0.0156	TRUE	0	0	0	1	0	TRUE	ACH-000225
ACHN_KIDNEY	CCDC137--SOD2	6	0	CCDC137	6739	chr17:79640406:+	SOD2	26956	chr6:160100850:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0755	0	CCDC137->chr17:79633394-79640934:+,coiled-coil_domain_containing_137,SOD2->chr6:160090089-160183561:-,superoxide_dismutase_2,_mitochondrial	ACHN_KIDNEY	1	1	0.0755	TRUE	0	0	0	1	0	TRUE	ACH-000046
ACHN_KIDNEY	ALG3--HAUS4	2	0	ALG3	4016	chr3:183962389:-	HAUS4	16625	chr14:23415917:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	ALG3->ALG3,_alpha-1,3-_mannosyltransferase,chr3:183960089-183967336:-,HAUS4->HAUS_augmin_like_complex_subunit_4,chr14:23415437-23426370:-	ACHN_KIDNEY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000046
ACHN_KIDNEY	CDIP1--DAZAP1	2	0	CDIP1	1127	chr16:4588703:-	DAZAP1	17061	chr19:1416456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	CDIP1->cell_death-inducing_p53_target_1,chr16:4560676-4588829:-,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	ACHN_KIDNEY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000046
ACHN_KIDNEY	PABPC1L--NBPF10	2	0	PABPC1L	8458	chr20:43559367:+	NBPF10	51050	chr1:145325952:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	ACHN_KIDNEY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000046
HS822T_FIBROBLAST	CTGF--MT2A	8	0	CTGF	1166	chr6:132272348:-	MT2A	7582	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0	CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS822T_FIBROBLAST	1	1	0.0889	TRUE	0	0	0	3	0	TRUE	ACH-000229
HS822T_FIBROBLAST	CTGF--TPM2	8	0	CTGF	1143	chr6:132272371:-	TPM2	8296	chr9:35689920:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS822T_FIBROBLAST	1	1	0.0889	TRUE	0	0	0	2	0	TRUE	ACH-000229
HS822T_FIBROBLAST	KIAA1199--TGFBI	8	0	KIAA1199	13288	chr15:81199062:+	TGFBI	45581	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0	KIAA1199->chr15:81071684-81244117:+,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS822T_FIBROBLAST	1	1	0.0889	TRUE	0	0	0	1	0	TRUE	ACH-000229
HS822T_FIBROBLAST	CTGF--TPM2	6	2	CTGF	1236	chr6:132272278:-	TPM2	8316	chr9:35689900:-	INCL_NON_REF_SPLICE	YES	3	15	0.73	0.35	0.0667	0.0222	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS822T_FIBROBLAST	0.35	0.73	0.0889	TRUE	0	0	0	2	0	TRUE	ACH-000229
HS822T_FIBROBLAST	CTGF--ACTB	3	0	CTGF	2993	chr6:132270521:-	ACTB	12871	chr7:5567975:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS822T_FIBROBLAST	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000229
HS822T_FIBROBLAST	CTGF--ACTB	3	0	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS822T_FIBROBLAST	1	1	0.0333	TRUE	0	0	0	9	0	TRUE	ACH-000229
HS822T_FIBROBLAST	CTGF--TPM2	3	0	CTGF	1177	chr6:132272337:-	TPM2	8335	chr9:35689881:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS822T_FIBROBLAST	1	1	0.0333	TRUE	0	0	0	2	0	TRUE	ACH-000229
HS822T_FIBROBLAST	VIM--ACTG1	3	0	VIM	2126	chr10:17271383:+	ACTG1	16419	chr17:79477986:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.03%,VIM->chr10:17270258-17279592:+,vimentin,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HS822T_FIBROBLAST	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000229
HS822T_FIBROBLAST	AKT3--ADSS	2	3	AKT3	3500	chr1:244006427:-	ADSS	38307	chr1:244601070:-	ONLY_REF_SPLICE	YES	31	70	0.14	0.07	0.0222	0.0333	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-	HS822T_FIBROBLAST	0.07	0.14	0.0555	TRUE	0	1	0	4	1	TRUE	ACH-000229
HS822T_FIBROBLAST	LTBP2--EFEMP1	2	0	LTBP2	19759	chr14:74983525:-	EFEMP1	46203	chr2:56098258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	PROTCLUST,LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,EFEMP1->EGF_containing_fibulin-like_extracellular_matrix_protein_1,chr2:56093102-56151274:-	HS822T_FIBROBLAST	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000229
HS822T_FIBROBLAST	MIR210HG--DNM3OS	2	0	MIR210HG	1106	chr11:568352:-	DNM3OS	7156	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	HGNC_GENEFAM,MIR210HG->MIR210_host_gene,chr11:565660-568457:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	HS822T_FIBROBLAST	1	1	0.0222	TRUE	0	2	0	3	2	TRUE	ACH-000229
HS822T_FIBROBLAST	TSTD3--PNISR	2	0	TSTD3	1455	chr6:99969023:+	PNISR	16787	chr6:99854044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	LOCAL_INVERSION:+:-:[95362],TSTD3->chr6:99968569-99979794:+,thiosulfate_sulfurtransferase_(rhodanese)-like_domain_containing_3,PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-	HS822T_FIBROBLAST	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000229
HUH7_LIVER	RTN3--PACS1	172	198	RTN3	1333	chr11:63449250:+	PACS1	23636	chr11:65960957:+	ONLY_REF_SPLICE	YES	416	59	0.47	0.86	1.9176	2.2075	RTN3->chr11:63448918-63527363:+,reticulon_3,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	HUH7_LIVER	0.47	0.86	4.1251	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	IGFBP7--PCAT4	175	60	IGFBP7	1509	chr4:57976043:-	PCAT4	11409	chr4:80782444:+	ONLY_REF_SPLICE	YES	42	0	0.85	1	1.951	0.6689	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,PCAT4->chr4:80748625-80798924:+,prostate_cancer_associated_transcript_4_(non-protein_coding)	HUH7_LIVER	0.85	1	2.6199	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	GAREM--ACN9	111	30	GAREM	4540	chr18:29890156:-	ACN9	24120	chr7:96810324:+	ONLY_REF_SPLICE	YES	2	124	0.99	0.53	1.2375	0.3345	GAREM->chr18:29704840-30050447:-,ACN9->chr7:96745902-96811075:+	HUH7_LIVER	0.53	0.99	1.572	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	SORD--C15orf43	35	24	SORD	1246	chr15:45315547:+	C15orf43	23000	chr15:45258356:+	ONLY_REF_SPLICE	YES	184	14	0.24	0.81	0.3902	0.2676	LOCAL_REARRANGEMENT:+:[43875],SORD->chr15:45315302-45369383:+,sorbitol_dehydrogenase,C15orf43->chr15:45248900-45271427:+,chromosome_15_open_reading_frame_43	HUH7_LIVER	0.24	0.81	0.6578	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	FIP1L1--RP11-25H12.1	35	12	FIP1L1	8584	chr4:54266006:+	RP11-25H12.1	35683	chr4:66988074:+	ONLY_REF_SPLICE	YES	89	15	0.35	0.76	0.3902	0.1338	FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1,RP11-25H12.1->chr4:66864564-67015730:+	HUH7_LIVER	0.35	0.76	0.524	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	ATP6V0D1--RBM19	30	12	ATP6V0D1	1281	chr16:67514860:-	RBM19	42072	chr12:114296701:-	ONLY_REF_SPLICE	YES	209	36	0.17	0.54	0.3345	0.1338	ATP6V0D1->ATPase_H+_transporting_V0_subunit_d1,chr16:67471917-67515140:-,RBM19->RNA_binding_motif_protein_19,chr12:114254543-114404176:-	HUH7_LIVER	0.17	0.54	0.4683	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	ANKIB1--DTX2P1	32	1	ANKIB1	1286	chr7:91875833:+	DTX2P1	36118	chr7:76629626:+	ONLY_REF_SPLICE	YES	6	5	0.85	0.87	0.3568	0.0111	ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	HUH7_LIVER	0.85	0.87	0.3679	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	SORD--C15orf43	22	38	SORD	1246	chr15:45315547:+	C15orf43	20798	chr15:45250571:+	ONLY_REF_SPLICE	YES	184	0	0.25	1	0.2453	0.4237	LOCAL_REARRANGEMENT:+:[43875],SORD->chr15:45315302-45369383:+,sorbitol_dehydrogenase,C15orf43->chr15:45248900-45271427:+,chromosome_15_open_reading_frame_43	HUH7_LIVER	0.25	1	0.669	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RTN3--PACS1	2	110	RTN3	1333	chr11:63449250:+	PACS1	24724	chr11:65977833:+	ONLY_REF_SPLICE	YES	416	75	0.21	0.6	0.0223	1.2264	RTN3->chr11:63448918-63527363:+,reticulon_3,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	HUH7_LIVER	0.21	0.6	1.2487	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	DTX2P1--ANKIB1	24	14	DTX2P1	10622	chr7:76635092:+	ANKIB1	24407	chr7:91924203:+	ONLY_REF_SPLICE	YES	3	8	0.93	0.83	0.2676	0.1561	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+	HUH7_LIVER	0.83	0.93	0.4237	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	IGFBP7--PCAT4	11	53	IGFBP7	1484	chr4:57976068:-	PCAT4	11409	chr4:80782444:+	INCL_NON_REF_SPLICE	YES	44	0	0.59	1	0.1226	0.5909	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,PCAT4->chr4:80748625-80798924:+,prostate_cancer_associated_transcript_4_(non-protein_coding)	HUH7_LIVER	0.59	1	0.7135	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	PLOD2--PLSCR4	22	9	PLOD2	9980	chr3:145820542:-	PLSCR4	33554	chr3:145924548:-	ONLY_REF_SPLICE	YES	274	5	0.1	0.86	0.2453	0.1003	LOCAL_REARRANGEMENT:-:[28686],PLOD2->chr3:145787227-145881440:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_2,PLSCR4->chr3:145910126-145968966:-,phospholipid_scramblase_4	HUH7_LIVER	0.1	0.86	0.3456	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	UQCC1--GDF5OS	20	1	UQCC1	1202	chr20:33999743:-	GDF5OS	24899	chr20:34020829:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.223	0.0111	LOCAL_INVERSION:-:+:[20883],UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,GDF5OS->chr20:34020827-34023248:+,growth_differentiation_factor_5_opposite_strand	HUH7_LIVER	1	1	0.2341	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	SORD--C15orf43	10	39	SORD	1246	chr15:45315547:+	C15orf43	19716	chr15:45249094:+	ONLY_REF_SPLICE	YES	184	0	0.21	1	0.1115	0.4348	LOCAL_REARRANGEMENT:+:[43875],SORD->chr15:45315302-45369383:+,sorbitol_dehydrogenase,C15orf43->chr15:45248900-45271427:+,chromosome_15_open_reading_frame_43	HUH7_LIVER	0.21	1	0.5463	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RNF185--SMTN	17	7	RNF185	4463	chr22:31588688:+	SMTN	15531	chr22:31476436:+	ONLY_REF_SPLICE	YES	77	0	0.24	1	0.1895	0.078	LOCAL_REARRANGEMENT:+:[55425],RNF185->chr22:31556168-31603005:+,ring_finger_protein_185,SMTN->chr22:31460091-31500743:+,smoothelin	HUH7_LIVER	0.24	1	0.2675	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	SORD--C15orf43	8	28	SORD	1246	chr15:45315547:+	C15orf43	21938	chr15:45253721:+	ONLY_REF_SPLICE	YES	184	6	0.16	0.86	0.0892	0.3122	LOCAL_REARRANGEMENT:+:[43875],SORD->chr15:45315302-45369383:+,sorbitol_dehydrogenase,C15orf43->chr15:45248900-45271427:+,chromosome_15_open_reading_frame_43	HUH7_LIVER	0.16	0.86	0.4014	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	IPO11--KIAA0825	14	3	IPO11	32813	chr5:61857084:+	KIAA0825	73974	chr5:93489829:-	ONLY_REF_SPLICE	YES	42	0	0.29	1	0.1561	0.0334	{Klijn_CCL:Liver=1},IPO11->chr5:61699799-61924409:+,importin_11,KIAA0825->KIAA0825,chr5:93488671-93954309:-	HUH7_LIVER	0.29	1	0.1895	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	ACN9--KIAA1045	11	12	ACN9	2308	chr7:96747209:+	KIAA1045	11219	chr9:34971292:+	ONLY_REF_SPLICE	YES	118	0	0.16	1	0.1226	0.1338	ACN9->chr7:96745902-96811075:+,KIAA1045->chr9:34957484-34982541:+	HUH7_LIVER	0.16	1	0.2564	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	SORD--C15orf43	7	9	SORD	1246	chr15:45315547:+	C15orf43	24086	chr15:45266065:+	ONLY_REF_SPLICE	YES	184	11	0.08	0.59	0.078	0.1003	LOCAL_REARRANGEMENT:+:[43875],SORD->chr15:45315302-45369383:+,sorbitol_dehydrogenase,C15orf43->chr15:45248900-45271427:+,chromosome_15_open_reading_frame_43	HUH7_LIVER	0.08	0.59	0.1783	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	ACN9--KIAA1045	4	12	ACN9	3388	chr7:96765779:+	KIAA1045	11219	chr9:34971292:+	ONLY_REF_SPLICE	YES	128	0	0.11	1	0.0446	0.1338	ACN9->chr7:96745902-96811075:+,KIAA1045->chr9:34957484-34982541:+	HUH7_LIVER	0.11	1	0.1784	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	ACN9--KIAA1045	3	13	ACN9	4534	chr7:96772130:+	KIAA1045	11219	chr9:34971292:+	ONLY_REF_SPLICE	YES	131	0	0.11	1	0.0334	0.1449	ACN9->chr7:96745902-96811075:+,KIAA1045->chr9:34957484-34982541:+	HUH7_LIVER	0.11	1	0.1783	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	FIP1L1--RP11-25H12.1	4	7	FIP1L1	8584	chr4:54266006:+	RP11-25H12.1	36756	chr4:67001106:+	ONLY_REF_SPLICE	YES	89	10	0.11	0.52	0.0446	0.078	FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1,RP11-25H12.1->chr4:66864564-67015730:+	HUH7_LIVER	0.11	0.52	0.1226	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	ANKIB1--PTPRN2	3	4	ANKIB1	14894	chr7:91991587:+	PTPRN2	34411	chr7:158109624:-	ONLY_REF_SPLICE	YES	30	2	0.19	0.78	0.0334	0.0446	{Klijn_CCL:Liver=1},ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+,PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2	HUH7_LIVER	0.19	0.78	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	TUBB4B--FTH1	4	0	TUBB4B	1128	chr9:140135792:+	FTH1	6697	chr11:61734931:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	HUH7_LIVER	1	1	0.0446	TRUE	0	0	0	6	0	TRUE	ACH-000480
HUH7_LIVER	RNF185--SMTN	2	5	RNF185	3444	chr22:31583256:+	SMTN	15531	chr22:31476436:+	ONLY_REF_SPLICE	NO	77	0	0.08	1	0.0223	0.0557	LOCAL_REARRANGEMENT:+:[55425],RNF185->chr22:31556168-31603005:+,ring_finger_protein_185,SMTN->chr22:31460091-31500743:+,smoothelin	HUH7_LIVER	0.08	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	AFP--ALB	3	0	AFP	17109	chr4:74321007:+	ALB	36415	chr4:74286809:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	DGD_PARALOGS,PROTCLUST,LOCAL_REARRANGEMENT:+:[9726],AFP->alpha_fetoprotein,chr4:74296855-74321891:+,ALB->albumin,chr4:74262831-74287129:+	HUH7_LIVER	1	1	0.0334	TRUE	0	1	0	1	1	TRUE	ACH-000480
HUH7_LIVER	FGA--FGB	3	0	FGA	1133	chr4:155511786:-	FGB	13235	chr4:155486960:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	GTEx&tcga_normals:62/3694=1.68%,GTEx:0.84%,GTEx_FI:{Liver=[count:3=pct:2.5]},GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},HGNC_GENEFAM,PROTCLUST,LOCAL_INVERSION:-:+:[12040],FGA->chr4:155504278-155511918:-,fibrinogen_alpha_chain,FGB->chr4:155484108-155492238:+,fibrinogen_beta_chain	HUH7_LIVER	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	NCAM2--BOD1L1	3	0	NCAM2	2436	chr21:22519569:+	BOD1L1	41035	chr4:13621691:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	NCAM2->chr21:22370633-22915650:+,neural_cell_adhesion_molecule_2,BOD1L1->biorientation_of_chromosomes_in_cell_division_1_like_1,chr4:13570362-13629347:-	HUH7_LIVER	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RNF185--SMTN	3	0	RNF185	3444	chr22:31583256:+	SMTN	18232	chr22:31479165:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[55425],RNF185->chr22:31556168-31603005:+,ring_finger_protein_185,SMTN->chr22:31460091-31500743:+,smoothelin	HUH7_LIVER	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RNF185--SMTN	3	0	RNF185	4463	chr22:31588688:+	SMTN	18232	chr22:31479165:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[55425],RNF185->chr22:31556168-31603005:+,ring_finger_protein_185,SMTN->chr22:31460091-31500743:+,smoothelin	HUH7_LIVER	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	CLDN16--CLDN1	2	0	CLDN16	1121	chr3:190040450:+	CLDN1	16258	chr3:190030825:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	HGNC_GENEFAM,PROTCLUST,LOCAL_INVERSION:+:-:[66],CLDN16->chr3:190040330-190129932:+,claudin_16,CLDN1->chr3:190023490-190040264:-,claudin_1	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	HECTD1--EEF1D	2	0	HECTD1	3008	chr14:31675003:-	EEF1D	58346	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	HNRNPA2B1--TTK	2	0	HNRNPA2B1	10520	chr7:26230613:-	TTK	27448	chr6:80741184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,TTK->TTK_protein_kinase,chr6:80713604-80752244:+	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	IGFBP7--PCAT4	2	0	IGFBP7	1509	chr4:57976043:-	PCAT4	14367	chr4:80798769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,PCAT4->chr4:80748625-80798924:+,prostate_cancer_associated_transcript_4_(non-protein_coding)	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HUH7_LIVER	1	1	0.0223	TRUE	1	10	0	18	0	TRUE	ACH-000480
HUH7_LIVER	RNF185--SMTN	2	0	RNF185	3444	chr22:31583256:+	SMTN	21443	chr22:31483951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_REARRANGEMENT:+:[55425],RNF185->chr22:31556168-31603005:+,ring_finger_protein_185,SMTN->chr22:31460091-31500743:+,smoothelin	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RNF185--SMTN	2	0	RNF185	3444	chr22:31583256:+	SMTN	15757	chr22:31476662:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_REARRANGEMENT:+:[55425],RNF185->chr22:31556168-31603005:+,ring_finger_protein_185,SMTN->chr22:31460091-31500743:+,smoothelin	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	SPECC1L--BID	2	0	SPECC1L	1166	chr22:24666951:+	BID	33927	chr22:18222254:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,BID->BH3_interacting_domain_death_agonist,Oncogene{Bushman},chr22:18216906-18257536:-	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	DTX2P1--ANKIB1	1	2	DTX2P1	9395	chr7:76633624:+	ANKIB1	24407	chr7:91924203:+	ONLY_REF_SPLICE	NO	4	8	0.43	0.27	0.0111	0.0223	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+	HUH7_LIVER	0.27	0.43	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	PIEZO2--AC005522.7	1	2	PIEZO2	2160	chr18:11066126:-	AC005522.7	71281	chr7:76602357:-	ONLY_REF_SPLICE	NO	11	0	0.21	1	0.0111	0.0223	PIEZO2->chr18:10666480-11148587:-,piezo_type_mechanosensitive_ion_channel_component_2,AC005522.7->chr7:76601996-76606278:-	HUH7_LIVER	0.21	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000480
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RNASE10--ATP13A3	32	21	RNASE10	1483	chr14:20974178:+	ATP13A3	9771	chr3:194206564:-	ONLY_REF_SPLICE	YES	48	3	0.52	0.95	0.36	0.2362	RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),ATP13A3->ATPase_13A3,chr3:194123401-194219093:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.52	0.95	0.5962	TRUE	0	1	0	1	1	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RNASE10--ATP13A3	22	19	RNASE10	1483	chr14:20974178:+	ATP13A3	12169	chr3:194182965:-	ONLY_REF_SPLICE	YES	48	16	0.46	0.72	0.2475	0.2137	RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),ATP13A3->ATPase_13A3,chr3:194123401-194219093:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.46	0.72	0.4612	TRUE	0	1	0	1	1	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	GSTP1--JUP	5	0	GSTP1	3571	chr11:67353636:+	JUP	25440	chr17:39777078:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1,JUP->chr17:39775692-39943183:-,junction_plakoglobin	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	PABPC1--KRT14	5	0	PABPC1	2002	chr8:101734036:-	KRT14	18384	chr17:39743147:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	GTEx&tcga_normals:1/3694=0.03%,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,KRT14->chr17:39738531-39743173:-,keratin_14	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0562	TRUE	0	0	0	4	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RP11-499F3.2--TBC1D2B	4	1	RP11-499F3.2	2399	chr15:82090265:-	TBC1D2B	16505	chr15:78310299:-	ONLY_REF_SPLICE	YES	1	31	0.83	0.14	0.045	0.0112	RP11-499F3.2->chr15:81952823-82163466:-,TBC1D2B->TBC1_domain_family_member_2B,chr15:78276378-78370066:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.14	0.83	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	C17orf76-AS1--SEPT9	3	0	C17orf76-AS1	1593	chr17:16342728:+	SEPT9	45890	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	C17orf76-AS1->chr17:16342136-16381992:+,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0337	TRUE	0	3	0	6	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	TXN2--S100A2	3	0	TXN2	5473	chr22:36863872:-	S100A2	14400	chr1:153534046:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	TXN2->chr22:36863083-36878077:-,thioredoxin_2,S100A2->S100_calcium_binding_protein_A2,chr1:153533584-153540366:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	TLN2--LINC00871	2	1	TLN2	26764	chr15:63000995:+	LINC00871	90229	chr14:46970510:+	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0225	0.0112	TLN2->chr15:62682725-63136830:+,talin_2,LINC00871->chr14:46410146-46971026:+,long_intergenic_non-protein_coding_RNA_871	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.27	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	BCL2L13--UBE3A	2	0	BCL2L13	4107	chr22:18138598:+	UBE3A	31518	chr15:25605674:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	C17orf76-AS1--CYHR1	2	0	C17orf76-AS1	1593	chr17:16342728:+	CYHR1	22066	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	C17orf76-AS1->chr17:16342136-16381992:+,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	0	0	2	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	C7orf50--MAD1L1	2	0	C7orf50	3078	chr7:1166893:-	MAD1L1	50779	chr7:1938026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	1	0	6	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	INVS--ERP44	2	0	INVS	5175	chr9:102888831:+	ERP44	38787	chr9:102769971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[216],INVS->chr9:102861538-103063282:+,inversin,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	LRRC16A--RP11-439H9.1	2	0	LRRC16A	2856	chr6:25285137:+	RP11-439H9.1	46987	chr6:23341963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LRRC16A->chr6:25279306-25620758:+,leucine_rich_repeat_containing_16A,RP11-439H9.1->chr6:23337939-23346788:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RCC1--SEPT9	2	0	RCC1	2175	chr1:28834672:+	SEPT9	51565	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	7	0	1	1	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	SAMD12--EIF3H	2	0	SAMD12	2373	chr8:119592954:-	EIF3H	30065	chr8:117671219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hypothalamus=1},SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	1	0	2	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	TBC1D9B--CSNK1G3	2	0	TBC1D9B	8212	chr5:179315103:-	CSNK1G3	33920	chr5:122893189:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TBC1D9B->TBC1_domain_family_member_9B,chr5:179289066-179334859:-,CSNK1G3->casein_kinase_1_gamma_3,chr5:122847793-122952739:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	TCF12--UBB	2	0	TCF12	7716	chr15:57384089:+	UBB	44173	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,UBB->chr17:16284112-16286059:+,ubiquitin_B	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	TYMS--GNAS	2	0	TYMS	4286	chr18:662320:+	GNAS	29027	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	2	0	3	0	TRUE	ACH-000606
HUCCT1_BILIARY_TRACT	PCBP2--CDS2	89	0	PCBP2	21220	chr12:53873447:+	CDS2	47498	chr20:5177872:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9887	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	HUCCT1_BILIARY_TRACT	1	1	0.9887	TRUE	0	802	86	3	772	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	PCBP2--CDS2	81	0	PCBP2	21228	chr12:53873455:+	CDS2	47507	chr20:5177881:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8998	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	HUCCT1_BILIARY_TRACT	1	1	0.8998	TRUE	0	802	86	3	772	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	PCBP2--CDS2	43	0	PCBP2	21228	chr12:53873455:+	CDS2	47508	chr20:5177882:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4777	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	HUCCT1_BILIARY_TRACT	1	1	0.4777	TRUE	0	802	86	3	772	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	PCBP2--CDS2	15	0	PCBP2	21225	chr12:53873452:+	CDS2	47503	chr20:5177877:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1666	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	HUCCT1_BILIARY_TRACT	1	1	0.1666	TRUE	0	802	86	3	772	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	PCBP2--CDS2	6	0	PCBP2	21228	chr12:53873455:+	CDS2	47509	chr20:5177883:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	HUCCT1_BILIARY_TRACT	1	1	0.0667	TRUE	0	802	86	3	772	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	PCBP2--CDS2	3	0	PCBP2	21229	chr12:53873456:+	CDS2	47506	chr20:5177880:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	HUCCT1_BILIARY_TRACT	1	1	0.0333	TRUE	0	802	86	3	772	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	NPAS2--SLC9A4	2	1	NPAS2	9724	chr2:101565942:+	SLC9A4	39298	chr2:103119907:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0.0111	NPAS2->chr2:101436614-101613291:+,neuronal_PAS_domain_protein_2,SLC9A4->chr2:103089762-103150431:+,solute_carrier_family_9_member_A4	HUCCT1_BILIARY_TRACT	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	ARHGAP18--CDKN3	2	0	ARHGAP18	1202	chr6:130031169:-	CDKN3	28494	chr14:54878202:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	ARHGAP18->Rho_GTPase_activating_protein_18,chr6:129897277-130031370:-,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	HUCCT1_BILIARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	TOR1AIP2--ACBD6	2	0	TOR1AIP2	1565	chr1:179846374:-	ACBD6	38405	chr1:180283857:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	TOR1AIP2->chr1:179809102-179846938:-,torsin_1A_interacting_protein_2,ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-	HUCCT1_BILIARY_TRACT	1	1	0.0222	TRUE	0	1	0	1	1	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	NCKAP1--RP11-395N3.2	1	1	NCKAP1	8369	chr2:183859567:-	RP11-395N3.2	55321	chr2:227675628:+	ONLY_REF_SPLICE	YES	3	8	0.4	0.2	0.0111	0.0111	NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-,RP11-395N3.2->chr2:227664862-227675745:+	HUCCT1_BILIARY_TRACT	0.2	0.4	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000976
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARID1A--MAU2	126	9	ARID1A	2508	chr1:27024031:+	MAU2	31135	chr19:19446527:+	ONLY_REF_SPLICE	YES	9	48	0.94	0.74	1.4484	0.1035	ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,MAU2->MAU2_sister_chromatid_cohesion_factor,chr19:19431490-19469563:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.94	1.5519	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	42	37	IGKV2-30	1681	chr2:89544399:-	AC096579.7	9026	chr2:89130914:-	INCL_NON_REF_SPLICE	YES	56	0	0.59	1	0.4828	0.4253	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.9081	TRUE	0	0	0	4	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARID1A--MAU2	1	7	ARID1A	2508	chr1:27024031:+	MAU2	32587	chr19:19447979:+	ONLY_REF_SPLICE	YES	9	92	0.47	0.08	0.0115	0.0805	ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,MAU2->MAU2_sister_chromatid_cohesion_factor,chr19:19431490-19469563:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.47	0.092	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC007390.5--SAE1	2	0	AC007390.5	5837	chr2:37428869:+	SAE1	27687	chr19:47700490:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	AC007390.5->chr2:37423631-37443336:+,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK8--U2AF1	2	0	DOCK8	22544	chr9:339099:+	U2AF1	79260	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	DOCK8->chr9:214854-465259:+,dedicator_of_cytokinesis_8,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPATCH8--WWP2	2	0	GPATCH8	2180	chr17:42552197:-	WWP2	51424	chr16:69967873:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-,WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1143--OBSCN	2	0	KIAA1143	3192	chr3:44794837:-	OBSCN	14660	chr1:228401142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	KIAA1143->KIAA1143,chr3:44779153-44803154:-,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHL42--VPS37A	2	0	KLHL42	4951	chr12:27944834:+	VPS37A	17971	chr8:17123416:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	KLHL42->chr12:27932953-27955973:+,kelch_like_family_member_42,VPS37A->VPS37A,_ESCRT-I_subunit,chr8:17104080-17159936:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTERFD1--PTDSS1	2	0	MTERFD1	1110	chr8:97273729:-	PTDSS1	24438	chr8:97332474:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	LOCAL_INVERSION:-:+:[105],MTERFD1->chr8:97251626-97273838:-,PTDSS1->chr8:97273943-97349223:+,phosphatidylserine_synthase_1	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTO1--C6orf57	2	0	MTO1	9282	chr6:74191967:+	C6orf57	27509	chr6:71289117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	MTO1->chr6:74171301-74218959:+,mitochondrial_tRNA_translation_optimization_1,C6orf57->chr6:71276620-71299272:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NKTR--ATP1B3	2	0	NKTR	15451	chr3:42674315:+	ATP1B3	41549	chr3:141644373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	NKTR->chr3:42642106-42690227:+,natural_killer_cell_triggering_receptor,ATP1B3->ATPase_Na+/K+_transporting_subunit_beta_3,chr3:141594966-141645356:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PALB2--COG7	2	0	PALB2	11829	chr16:23634290:-	COG7	32136	chr16:23417583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	PALB2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:23614488-23652631:-,partner_and_localizer_of_BRCA2,COG7->chr16:23399814-23464501:-,component_of_oligomeric_golgi_complex_7	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4D--NDUFAF2	2	0	PDE4D	1070	chr5:59817878:-	NDUFAF2	60965	chr5:60368952:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	2	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL5--ATP1A1	2	0	RPL5	2636	chr1:93299217:+	ATP1A1	26540	chr1:116939220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD5--FAM172A	2	0	SMAD5	1118	chr5:135468651:+	FAM172A	25188	chr5:93388932:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	SMAD5->SMAD_family_member_5,chr5:135468534-135524435:+,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBB--MARCH8	2	0	TUBB	1363	chr6:30688340:+	MARCH8	13971	chr10:46028737:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I,MARCH8->chr10:45950035-46090354:-,membrane_associated_ring-CH-type_finger_8	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
NCIH2887_LUNG	ZNF823--RP11-178C3.1	654	154	ZNF823	1193	chr19:11849632:-	RP11-178C3.1	11406	chr17:58043764:+	ONLY_REF_SPLICE	YES	8	0	0.99	1	7.3199	1.7236	ZNF823->chr19:11832080-11849824:-,zinc_finger_protein_823,RP11-178C3.1->chr17:58018269-58050462:+	NCIH2887_LUNG	0.99	1	9.0435	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	LIN9--PARP1	46	40	LIN9	11731	chr1:226453234:-	PARP1	21584	chr1:226590080:-	ONLY_REF_SPLICE	YES	50	312	0.63	0.22	0.5149	0.4477	LOCAL_REARRANGEMENT:-:[50822],LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component,PARP1->chr1:226548392-226595780:-,poly(ADP-ribose)_polymerase_1	NCIH2887_LUNG	0.22	0.63	0.9626	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	GAS6-AS1--TMCO3	55	1	GAS6-AS1	1062	chr13:114518664:+	TMCO3	19812	chr13:114193672:+	ONLY_REF_SPLICE	YES	0	126	1	0.31	0.6156	0.0112	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	NCIH2887_LUNG	0.31	1	0.6268	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	ZNF823--RP11-178C3.1	18	101	ZNF823	1193	chr19:11849632:-	RP11-178C3.1	12471	chr17:58050196:+	ONLY_REF_SPLICE	YES	8	4	0.94	0.97	0.2015	1.1304	ZNF823->chr19:11832080-11849824:-,zinc_finger_protein_823,RP11-178C3.1->chr17:58018269-58050462:+	NCIH2887_LUNG	0.94	0.97	1.3319	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	NPY1R--LINC01060	40	12	NPY1R	3065	chr4:164253634:-	LINC01060	15758	chr4:189397852:+	ONLY_REF_SPLICE	YES	1	82	0.98	0.39	0.4477	0.1343	NPY1R->Oncogene{Bushman},chr4:164245113-164265984:-,neuropeptide_Y_receptor_Y1,LINC01060->chr4:189321890-189602205:+,long_intergenic_non-protein_coding_RNA_1060	NCIH2887_LUNG	0.39	0.98	0.582	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	ESCO1--RP11-527H14.2	33	9	ESCO1	1262	chr18:19180584:-	RP11-527H14.2	23159	chr18:14962069:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3694	0.1007	ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1,RP11-527H14.2->chr18:14946266-14973769:+	NCIH2887_LUNG	1	1	0.4701	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	TRAF4--AFF3	31	16	TRAF4	1272	chr17:27071273:+	AFF3	23303	chr2:100453986:-	ONLY_REF_SPLICE	YES	54	0	0.47	1	0.347	0.1791	TRAF4->Oncogene{Bushman},TNF_receptor_associated_factor_4,chr17:27071002-27077974:+,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	NCIH2887_LUNG	0.47	1	0.5261	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	ESCO1--RP11-527H14.2	30	5	ESCO1	1262	chr18:19180584:-	RP11-527H14.2	26421	chr18:14972350:+	INCL_NON_REF_SPLICE	YES	0	22	1	0.61	0.3358	0.056	ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1,RP11-527H14.2->chr18:14946266-14973769:+	NCIH2887_LUNG	0.61	1	0.3918	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	NPY1R--LINC01060	23	7	NPY1R	3065	chr4:164253634:-	LINC01060	17973	chr4:189406933:+	ONLY_REF_SPLICE	YES	1	44	0.97	0.41	0.2574	0.0783	NPY1R->Oncogene{Bushman},chr4:164245113-164265984:-,neuropeptide_Y_receptor_Y1,LINC01060->chr4:189321890-189602205:+,long_intergenic_non-protein_coding_RNA_1060	NCIH2887_LUNG	0.41	0.97	0.3357	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	RAPGEF1--NACC2	15	5	RAPGEF1	22777	chr9:134465273:-	NACC2	39289	chr9:138908275:-	ONLY_REF_SPLICE	YES	162	45	0.11	0.31	0.1679	0.056	RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-,NACC2->NACC_family_member_2,chr9:138898383-138987131:-	NCIH2887_LUNG	0.11	0.31	0.2239	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	LIN9--PARP1	10	20	LIN9	11051	chr1:226453914:-	PARP1	21584	chr1:226590080:-	ONLY_REF_SPLICE	YES	45	312	0.4	0.09	0.1119	0.2238	LOCAL_REARRANGEMENT:-:[50822],LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component,PARP1->chr1:226548392-226595780:-,poly(ADP-ribose)_polymerase_1	NCIH2887_LUNG	0.09	0.4	0.3357	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	LAMA5--GATA5	12	9	LAMA5	30525	chr20:60893510:-	GATA5	47173	chr20:61041607:-	ONLY_REF_SPLICE	YES	220	0	0.09	1	0.1343	0.1007	LOCAL_REARRANGEMENT:-:[96185],LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,GATA5->GATA_binding_protein_5,chr20:61038553-61051026:-	NCIH2887_LUNG	0.09	1	0.235	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	RAPGEF1--NACC2	13	1	RAPGEF1	20599	chr9:134471685:-	NACC2	39289	chr9:138908275:-	ONLY_REF_SPLICE	YES	83	45	0.14	0.24	0.1455	0.0112	RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-,NACC2->NACC_family_member_2,chr9:138898383-138987131:-	NCIH2887_LUNG	0.14	0.24	0.1567	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	XKR9--CASC11	11	5	XKR9	8344	chr8:71619388:+	CASC11	16533	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	95	0	0.14	1	0.1231	0.056	XKR9->XK_related_9,chr8:71581600-71702606:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NCIH2887_LUNG	0.14	1	0.1791	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	ESCO1--RP11-527H14.2	8	8	ESCO1	1262	chr18:19180584:-	RP11-527H14.2	24373	chr18:14965616:+	ONLY_REF_SPLICE	YES	0	20	1	0.44	0.0895	0.0895	ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1,RP11-527H14.2->chr18:14946266-14973769:+	NCIH2887_LUNG	0.44	1	0.179	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	ESCO1--RP11-527H14.2	7	5	ESCO1	1262	chr18:19180584:-	RP11-527H14.2	26426	chr18:14972355:+	ONLY_REF_SPLICE	YES	0	21	1	0.36	0.0783	0.056	ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1,RP11-527H14.2->chr18:14946266-14973769:+	NCIH2887_LUNG	0.36	1	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	RAPGEF1--RP11-885N19.6	7	3	RAPGEF1	24927	chr9:134463123:-	RP11-885N19.6	36122	chr9:141090732:-	ONLY_REF_SPLICE	YES	48	1	0.17	0.91	0.0783	0.0336	RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-,RP11-885N19.6->chr9:141090383-141093775:-	NCIH2887_LUNG	0.17	0.91	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	NPY1R--LINC01060	4	14	NPY1R	3065	chr4:164253634:-	LINC01060	14659	chr4:189377818:+	ONLY_REF_SPLICE	YES	1	35	0.95	0.34	0.0448	0.1567	NPY1R->Oncogene{Bushman},chr4:164245113-164265984:-,neuropeptide_Y_receptor_Y1,LINC01060->chr4:189321890-189602205:+,long_intergenic_non-protein_coding_RNA_1060	NCIH2887_LUNG	0.34	0.95	0.2015	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	FHIT--ATXN7	5	5	FHIT	6726	chr3:61027719:-	ATXN7	40134	chr3:63981181:+	ONLY_REF_SPLICE	YES	6	23	0.62	0.3	0.056	0.056	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,ATXN7->ataxin_7,chr3:63850233-63989138:+	NCIH2887_LUNG	0.3	0.62	0.112	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	GAS6-AS1--TMCO3	6	1	GAS6-AS1	1062	chr13:114518664:+	TMCO3	23260	chr13:114202618:+	ONLY_REF_SPLICE	YES	0	182	1	0.04	0.0672	0.0112	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	NCIH2887_LUNG	0.04	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	RP5-857K21.7--MTND2P28	5	1	RP5-857K21.7	1231	chr1:568367:+	MTND2P28	4713	chr1:565050:+	INCL_NON_REF_SPLICE	YES	130	0	0.04	1	0.056	0.0112	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	NCIH2887_LUNG	0.04	1	0.0672	TRUE	1	0	0	3	0	TRUE	ACH-000251
NCIH2887_LUNG	RP5-857K21.7--MTND2P28	5	1	RP5-857K21.7	1216	chr1:568352:+	MTND2P28	4713	chr1:565050:+	INCL_NON_REF_SPLICE	YES	57	0	0.1	1	0.056	0.0112	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	NCIH2887_LUNG	0.1	1	0.0672	TRUE	1	0	0	3	0	TRUE	ACH-000251
NCIH2887_LUNG	PDGFC--EMCN	3	5	PDGFC	1609	chr4:157891938:-	EMCN	31805	chr4:101401196:-	ONLY_REF_SPLICE	YES	28	0	0.22	1	0.0336	0.056	PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C,EMCN->chr4:101316498-101801283:-,endomucin	NCIH2887_LUNG	0.22	1	0.0896	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	PRSS23--PICALM	4	0	PRSS23	8412	chr11:86534635:+	PICALM	25674	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0448	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},PRSS23->chr11:86502101-86663952:+,protease,_serine_23,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	NCIH2887_LUNG	1	1	0.0448	TRUE	0	3	0	5	0	TRUE	ACH-000251
NCIH2887_LUNG	F11-AS1--MAML3	3	2	F11-AS1	1153	chr4:187421999:-	MAML3	16642	chr4:140812121:-	ONLY_REF_SPLICE	YES	28	8	0.15	0.38	0.0336	0.0224	F11-AS1->F11_antisense_RNA_1,chr4:187207248-187422151:-,MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3	NCIH2887_LUNG	0.15	0.38	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	TRAF4--AFF3	1	10	TRAF4	1272	chr17:27071273:+	AFF3	24351	chr2:100368763:-	ONLY_REF_SPLICE	YES	54	0	0.17	1	0.0112	0.1119	TRAF4->Oncogene{Bushman},TNF_receptor_associated_factor_4,chr17:27071002-27077974:+,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	NCIH2887_LUNG	0.17	1	0.1231	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	ESCO1--RP11-527H14.2	2	5	ESCO1	1262	chr18:19180584:-	RP11-527H14.2	26448	chr18:14972377:+	ONLY_REF_SPLICE	YES	0	21	1	0.25	0.0224	0.056	ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1,RP11-527H14.2->chr18:14946266-14973769:+	NCIH2887_LUNG	0.25	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	VIM--TGFB1	3	0	VIM	2132	chr10:17271389:+	TGFB1	12729	chr19:41859292:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	GTEx&tcga_normals:2/3694=0.05%,VIM->chr10:17270258-17279592:+,vimentin,TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1	NCIH2887_LUNG	1	1	0.0336	TRUE	0	0	0	2	0	TRUE	ACH-000251
NCIH2887_LUNG	MAML3--RP11-205M3.3	2	2	MAML3	2325	chr4:141074014:-	RP11-205M3.3	16704	chr4:170863994:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0224	0.0224	MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3,RP11-205M3.3->chr4:170838912-170897053:-	NCIH2887_LUNG	0.31	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	ITGB4--B3GNTL1	2	0	ITGB4	5617	chr17:73725517:+	B3GNTL1	32466	chr17:81006661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	NCIH2887_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	LARP1--FAM156A	2	0	LARP1	2848	chr5:154135753:+	FAM156A	34243	chrX:52985544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,FAM156A->chrX:52976462-53024651:-,family_with_sequence_similarity_156_member_A	NCIH2887_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	SREK1--ERBB2IP	2	0	SREK1	2361	chr5:65440365:+	ERBB2IP	35881	chr5:65307877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	GTEx_v2:{count=1;pct=0.01%;dist=Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[57422],SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1,ERBB2IP->chr5:65222303-65378377:+	NCIH2887_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	F11-AS1--MAML3	1	3	F11-AS1	5782	chr4:187347391:-	MAML3	16642	chr4:140812121:-	ONLY_REF_SPLICE	NO	4	8	0.5	0.33	0.0112	0.0336	F11-AS1->F11_antisense_RNA_1,chr4:187207248-187422151:-,MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3	NCIH2887_LUNG	0.33	0.5	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	PDGFC--EMCN	1	2	PDGFC	1609	chr4:157891938:-	EMCN	32928	chr4:101396266:-	ONLY_REF_SPLICE	YES	28	2	0.1	0.6	0.0112	0.0224	PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C,EMCN->chr4:101316498-101801283:-,endomucin	NCIH2887_LUNG	0.1	0.6	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	PDGFC--EMCN	1	1	PDGFC	1609	chr4:157891938:-	EMCN	35184	chr4:101386696:-	ONLY_REF_SPLICE	YES	28	2	0.07	0.5	0.0112	0.0112	PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C,EMCN->chr4:101316498-101801283:-,endomucin	NCIH2887_LUNG	0.07	0.5	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	RAPGEF6--CTD-2410N18.5	1	1	RAPGEF6	1275	chr5:130970655:-	CTD-2410N18.5	48968	chr5:133509713:-	ONLY_REF_SPLICE	YES	27	1	0.07	0.67	0.0112	0.0112	RAPGEF6->Rap_guanine_nucleotide_exchange_factor_6,chr5:130759614-130970929:-,CTD-2410N18.5->chr5:133502861-133561762:-	NCIH2887_LUNG	0.07	0.67	0.0224	TRUE	0	0	0	2	0	TRUE	ACH-000251
KYSE70_OESOPHAGUS	LSM12--PAIP1	40	21	LSM12	3290	chr17:42141169:-	PAIP1	15504	chr5:43543218:-	ONLY_REF_SPLICE	YES	76	375	0.45	0.14	0.5088	0.2671	LSM12->LSM12_homolog,chr17:42112003-42144987:-,PAIP1->chr5:43526369-43557860:-,poly(A)_binding_protein_interacting_protein_1	KYSE70_OESOPHAGUS	0.14	0.45	0.7759	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	TRMT10C--SUCLG2	43	6	TRMT10C	1142	chr3:101280847:+	SUCLG2	21571	chr3:67411192:-	ONLY_REF_SPLICE	YES	73	0	0.4	1	0.547	0.0763	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,SUCLG2->chr3:67410884-67705038:-,succinate-CoA_ligase_GDP-forming_beta_subunit	KYSE70_OESOPHAGUS	0.4	1	0.6233	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	ARHGAP21--SVIL	36	24	ARHGAP21	7212	chr10:24923940:-	SVIL	35575	chr10:29975580:-	ONLY_REF_SPLICE	YES	47	14	0.56	0.81	0.4579	0.3053	ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,SVIL->chr10:29746267-30025710:-,supervillin	KYSE70_OESOPHAGUS	0.56	0.81	0.7632	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	ARHGEF7--TSC22D1	32	6	ARHGEF7	4362	chr13:111806338:+	TSC22D1	51730	chr13:45010231:-	ONLY_REF_SPLICE	YES	15	76	0.72	0.33	0.4071	0.0763	ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,TSC22D1->TSC22_domain_family_member_1,chr13:45007655-45151283:-	KYSE70_OESOPHAGUS	0.33	0.72	0.4834	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	UQCC1--C22orf39	17	10	UQCC1	21609	chr20:33890656:-	C22orf39	29568	chr22:19429097:-	INCL_NON_REF_SPLICE	YES	11	24	0.71	0.53	0.2162	0.1272	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39	KYSE70_OESOPHAGUS	0.53	0.71	0.3434	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	PPIP5K1--CKMT1A	15	2	PPIP5K1	1351	chr15:43882080:-	CKMT1A	34774	chr15:43990212:+	ONLY_REF_SPLICE	YES	1	80	0.94	0.18	0.1908	0.0254	PPIP5K1->chr15:43825660-43882430:-,diphosphoinositol_pentakisphosphate_kinase_1,CKMT1A->chr15:43985084-43991420:+,creatine_kinase,_mitochondrial_1A	KYSE70_OESOPHAGUS	0.18	0.94	0.2162	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	ZCCHC11--GCM1	14	6	ZCCHC11	10136	chr1:52975268:-	GCM1	48164	chr6:53010566:-	ONLY_REF_SPLICE	YES	45	0	0.31	1	0.1781	0.0763	ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11,GCM1->chr6:52991762-53013627:-,glial_cells_missing_homolog_1	KYSE70_OESOPHAGUS	0.31	1	0.2544	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	PPIP5K1--CKMT1A	15	0	PPIP5K1	1061	chr15:43882370:-	CKMT1A	34774	chr15:43990212:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1908	0	PPIP5K1->chr15:43825660-43882430:-,diphosphoinositol_pentakisphosphate_kinase_1,CKMT1A->chr15:43985084-43991420:+,creatine_kinase,_mitochondrial_1A	KYSE70_OESOPHAGUS	1	1	0.1908	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	ZFHX3--AC004158.2	13	6	ZFHX3	9058	chr16:72984368:-	AC004158.2	34272	chr16:72604414:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1654	0.0763	ZFHX3->Oncogene{Bushman},chr16:72816784-73093597:-,zinc_finger_homeobox_3,AC004158.2->chr16:72459384-72698908:-	KYSE70_OESOPHAGUS	1	1	0.2417	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	KDM4C--KIAA1432	13	3	KDM4C	27495	chr9:7015929:+	KIAA1432	48608	chr9:5713896:+	ONLY_REF_SPLICE	YES	36	26	0.31	0.38	0.1654	0.0382	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,KIAA1432->chr9:5629025-5776557:+	KYSE70_OESOPHAGUS	0.31	0.38	0.2036	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	FBXL20--ACACA	10	5	FBXL20	3225	chr17:37499433:-	ACACA	48165	chr17:35620797:-	ONLY_REF_SPLICE	YES	10	51	0.6	0.23	0.1272	0.0636	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-	KYSE70_OESOPHAGUS	0.23	0.6	0.1908	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	ZCCHC11--GCM1	8	3	ZCCHC11	7906	chr1:52981563:-	GCM1	48164	chr6:53010566:-	ONLY_REF_SPLICE	YES	44	0	0.2	1	0.1018	0.0382	ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11,GCM1->chr6:52991762-53013627:-,glial_cells_missing_homolog_1	KYSE70_OESOPHAGUS	0.2	1	0.14	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	KIF13A--TPMT	7	2	KIF13A	15599	chr6:17831332:-	TPMT	51621	chr6:18149402:-	ONLY_REF_SPLICE	YES	47	0	0.16	1	0.089	0.0254	{Klijn_CCL:Head-Neck=1,Lymphoid=1},KIF13A->chr6:17759414-17987854:-,kinesin_family_member_13A,TPMT->chr6:18128542-18155305:-,thiopurine_S-methyltransferase	KYSE70_OESOPHAGUS	0.16	1	0.1144	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	MYO9B--AKAP10	6	2	MYO9B	2996	chr19:17213367:+	AKAP10	50070	chr17:19850818:-	ONLY_REF_SPLICE	YES	29	50	0.22	0.14	0.0763	0.0254	MYO9B->chr19:17186591-17325346:+,myosin_IXB,AKAP10->A-kinase_anchoring_protein_10,chr17:19807615-19881656:-	KYSE70_OESOPHAGUS	0.14	0.22	0.1017	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	ARHGAP21--SVIL	3	12	ARHGAP21	6119	chr10:24955914:-	SVIL	35575	chr10:29975580:-	ONLY_REF_SPLICE	YES	109	14	0.12	0.52	0.0382	0.1526	ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,SVIL->chr10:29746267-30025710:-,supervillin	KYSE70_OESOPHAGUS	0.12	0.52	0.1908	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	RP4-717I23.3--BCAR3	5	4	RP4-717I23.3	9665	chr1:93790192:-	BCAR3	37675	chr1:94057950:-	ONLY_REF_SPLICE	YES	14	12	0.39	0.43	0.0636	0.0509	RP4-717I23.3->chr1:93727743-93811582:-,BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-	KYSE70_OESOPHAGUS	0.39	0.43	0.1145	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	ZFHX3--AC004158.2	3	5	ZFHX3	9058	chr16:72984368:-	AC004158.2	36467	chr16:72589225:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0.0636	ZFHX3->Oncogene{Bushman},chr16:72816784-73093597:-,zinc_finger_homeobox_3,AC004158.2->chr16:72459384-72698908:-	KYSE70_OESOPHAGUS	1	1	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	HSPA5--GNAS	4	0	HSPA5	1574	chr9:128003036:-	GNAS	32113	chr20:57478790:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KYSE70_OESOPHAGUS	1	1	0.0509	TRUE	0	0	0	2	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	ZFHX3--AC004158.2	2	2	ZFHX3	9058	chr16:72984368:-	AC004158.2	37529	chr16:72574510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0.0254	ZFHX3->Oncogene{Bushman},chr16:72816784-73093597:-,zinc_finger_homeobox_3,AC004158.2->chr16:72459384-72698908:-	KYSE70_OESOPHAGUS	1	1	0.0508	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	PPP5C--IGFL2	2	0	PPP5C	4437	chr19:46879831:+	IGFL2	23299	chr19:46663672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,IGFL2->IGF_like_family_member_2,chr19:46646363-46664556:+	KYSE70_OESOPHAGUS	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	SLC39A14--DMTN	2	0	SLC39A14	13202	chr8:22273793:+	DMTN	37204	chr8:21937691:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	SLC39A14->chr8:22224762-22291642:+,solute_carrier_family_39_member_14,DMTN->chr8:21906506-21940038:+,dematin_actin_binding_protein	KYSE70_OESOPHAGUS	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	STAG1--TMEM168	2	0	STAG1	4564	chr3:136323151:-	TMEM168	51209	chr7:112415373:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,TMEM168->chr7:112402437-112430647:-,transmembrane_protein_168	KYSE70_OESOPHAGUS	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	TGIF1--MYL12B	2	0	TGIF1	8043	chr18:3450503:+	MYL12B	20407	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Lung=1},TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	KYSE70_OESOPHAGUS	1	1	0.0254	TRUE	0	2	0	6	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	RP11-78F17.1--RP11-419J16.1	1	2	RP11-78F17.1	1307	chr18:976896:+	RP11-419J16.1	13519	chr18:10144154:+	ONLY_REF_SPLICE	YES	25	0	0.11	1	0.0127	0.0254	RP11-78F17.1->chr18:976590-1174824:+,RP11-419J16.1->chr18:10125337-10144403:+	KYSE70_OESOPHAGUS	0.11	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	ZFHX3--AC004158.2	1	2	ZFHX3	9058	chr16:72984368:-	AC004158.2	38563	chr16:72557314:-	ONLY_REF_SPLICE	YES	0	2	1	0.6	0.0127	0.0254	ZFHX3->Oncogene{Bushman},chr16:72816784-73093597:-,zinc_finger_homeobox_3,AC004158.2->chr16:72459384-72698908:-	KYSE70_OESOPHAGUS	0.6	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000784
A549_LUNG	RICTOR--FYB	84	39	RICTOR	1298	chr5:39074213:-	FYB	55842	chr5:39141243:-	ONLY_REF_SPLICE	YES	6	0	0.95	1	0.911	0.423	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[30828],RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,FYB->FYN_binding_protein,chr5:39105338-39274630:-	A549_LUNG	0.95	1	1.334	TRUE	0	1	0	1	1	TRUE	ACH-000681
A549_LUNG	SCAMP2--WDR72	41	32	SCAMP2	8977	chr15:75137814:-	WDR72	25514	chr15:53998271:-	ONLY_REF_SPLICE	YES	232	0	0.24	1	0.4446	0.347	{Klijn_CCL:Lung=1},SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2,WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-	A549_LUNG	0.24	1	0.7916	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	ZNF43--RP11-69H14.6	11	11	ZNF43	11476	chr19:22018838:-	RP11-69H14.6	32259	chr15:22318877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1193	0.1193	ZNF43->chr19:21987752-22034927:-,zinc_finger_protein_43,RP11-69H14.6->chr15:22278010-22413497:+	A549_LUNG	1	1	0.2386	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	SCAMP2--WDR72	1	30	SCAMP2	8977	chr15:75137814:-	WDR72	25520	chr15:53998265:-	ONLY_REF_SPLICE	YES	232	0	0.12	1	0.0108	0.3253	{Klijn_CCL:Lung=1},SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2,WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-	A549_LUNG	0.12	1	0.3361	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	RICTOR--FYB	5	11	RICTOR	1080	chr5:39074431:-	FYB	55842	chr5:39141243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0542	0.1193	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[30828],RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,FYB->FYN_binding_protein,chr5:39105338-39274630:-	A549_LUNG	1	1	0.1735	TRUE	0	1	0	1	1	TRUE	ACH-000681
A549_LUNG	ZNF43--RP11-69H14.6	6	3	ZNF43	5509	chr19:22025947:-	RP11-69H14.6	32259	chr15:22318877:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0651	0.0325	ZNF43->chr19:21987752-22034927:-,zinc_finger_protein_43,RP11-69H14.6->chr15:22278010-22413497:+	A549_LUNG	0.9	1	0.0976	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	SCAMP2--WDR72	2	13	SCAMP2	7682	chr15:75140941:-	WDR72	25514	chr15:53998271:-	ONLY_REF_SPLICE	YES	236	0	0.06	1	0.0217	0.141	{Klijn_CCL:Lung=1},SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2,WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-	A549_LUNG	0.06	1	0.1627	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	NCEH1--MUC13	2	10	NCEH1	1372	chr3:172428637:-	MUC13	14570	chr3:124658364:-	ONLY_REF_SPLICE	YES	211	0	0.05	1	0.0217	0.1084	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,MUC13->Oncogene{Bushman},chr3:124624289-124672663:-,mucin_13,_cell_surface_associated	A549_LUNG	0.05	1	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	G2E3--DAPK1	3	0	G2E3	1150	chr14:31028478:+	DAPK1	34294	chr9:90219869:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+,DAPK1->Oncogene{Bushman},chr9:90112143-90323548:+,death_associated_protein_kinase_1	A549_LUNG	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	NSD1--CANX	3	0	NSD1	4006	chr5:176563031:+	CANX	50839	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,CANX->calnexin,chr5:179105629-179157926:+	A549_LUNG	1	1	0.0325	TRUE	0	0	0	2	0	TRUE	ACH-000681
A549_LUNG	ANXA1--ALDH1A1	2	0	ANXA1	1168	chr9:75766840:+	ALDH1A1	21839	chr9:75555168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LOCAL_INVERSION:+:-:[71315],ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	A549_LUNG	1	1	0.0217	TRUE	0	0	0	4	0	TRUE	ACH-000681
A549_LUNG	APP--PRMT2	2	0	APP	1565	chr21:27542882:-	PRMT2	37343	chr21:48068370:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,PRMT2->chr21:48055079-48085036:+,protein_arginine_methyltransferase_2	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	CASKIN1--NPIPA5	2	0	CASKIN1	3519	chr16:2239028:-	NPIPA5	22743	chr16:15459491:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	CASKIN1->CASK_interacting_protein_1,chr16:2227184-2246526:-,NPIPA5->chr16:15457516-15474904:-,nuclear_pore_complex_interacting_protein_family_member_A5	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	COPB2--NPM1	2	0	COPB2	1185	chr3:139108390:-	NPM1	34619	chr5:170832306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	COTL1--FAM195B	2	0	COTL1	1577	chr16:84651107:-	FAM195B	17916	chr17:79782430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1,FAM195B->chr17:79780287-79791178:-	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	DUSP16--IPO11	2	0	DUSP16	2384	chr12:12713934:-	IPO11	46295	chr5:61846194:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	DUSP16->chr12:12628829-12715317:-,dual_specificity_phosphatase_16,IPO11->chr5:61699799-61924409:+,importin_11	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	FOXRED1--PGD	2	0	FOXRED1	3074	chr11:126141552:+	PGD	15530	chr1:10463128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	FOXRED1->FAD-dependent_oxidoreductase_domain_containing_1,chr11:126138950-126148026:+,PGD->chr1:10458649-10480201:+,phosphogluconate_dehydrogenase	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	GAS2L3--CTA-392C11.1	2	0	GAS2L3	10970	chr12:101005919:+	CTA-392C11.1	28214	chr8:40156973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GAS2L3->chr12:100967461-101022064:+,growth_arrest_specific_2_like_3,CTA-392C11.1->chr8:40156260-40200921:-	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	ITGAV--TNKS2	2	0	ITGAV	26233	chr2:187534541:+	TNKS2	56411	chr10:93614786:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V,TNKS2->chr10:93558069-93625033:+,tankyrase_2	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	KIAA1429--DPY19L4	2	0	KIAA1429	1145	chr8:95565613:-	DPY19L4	40822	chr8:95768264:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	KIAA1429->KIAA1429,chr8:95499921-95565757:-,DPY19L4->chr8:95731931-95806064:+,dpy-19_like_4_(C._elegans)	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	LENG1--TBCB	2	0	LENG1	2499	chr19:54662020:-	TBCB	16395	chr19:36616353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LENG1->chr19:54658899-54663620:-,leukocyte_receptor_cluster_(LRC)_member_1,TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	LSM14A--CCDC9	2	0	LSM14A	7266	chr19:34706205:+	CCDC9	26565	chr19:47774531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	MAP4--USP21	2	0	MAP4	5952	chr3:48019355:-	USP21	42941	chr1:161132405:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,USP21->chr1:161129240-161135513:+,ubiquitin_specific_peptidase_21	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	NAA25--ANXA2	2	0	NAA25	1307	chr12:112546520:-	ANXA2	46426	chr15:60678285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	NCEH1--MUC13	2	0	NCEH1	1372	chr3:172428637:-	MUC13	17967	chr3:124646837:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,MUC13->Oncogene{Bushman},chr3:124624289-124672663:-,mucin_13,_cell_surface_associated	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	PIGT--TXNDC11	2	0	PIGT	4460	chr20:44049333:+	TXNDC11	12782	chr16:11830089:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PIGT->chr20:44044717-44054884:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_T,TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	PPP2R2A--PHF14	2	0	PPP2R2A	3250	chr8:26151256:+	PHF14	41295	chr7:11101418:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	PPRC1--RNF10	2	0	PPRC1	2381	chr10:103897795:+	RNF10	24286	chr12:120992521:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PPRC1->chr10:103892787-103910082:+,peroxisome_proliferator-activated_receptor_gamma,_coactivator-related_1,RNF10->chr12:120971283-121015397:+,ring_finger_protein_10	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	SASS6--HIAT1	2	0	SASS6	1206	chr1:100598306:-	HIAT1	21221	chr1:100515465:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LOCAL_INVERSION:-:+:[186],SASS6->SAS-6_centriolar_assembly_protein,chr1:100549119-100598511:-,HIAT1->chr1:100503653-100548933:+	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	TJP1--APBA2	2	0	TJP1	3834	chr15:30114205:-	APBA2	47274	chr15:29213843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TJP1->chr15:29991571-30261068:-,tight_junction_protein_1,APBA2->amyloid_beta_precursor_protein_binding_family_A_member_2,chr15:29129629-29410518:+	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	TXN--PTGR1	2	0	TXN	1229	chr9:113018692:-	PTGR1	14662	chr9:114348445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TXN->Oncogene{Bushman},chr9:113006091-113018920:-,thioredoxin,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	A549_LUNG	1	1	0.0217	TRUE	0	0	0	3	0	TRUE	ACH-000681
A549_LUNG	ZNF595--CHMP1A	2	0	ZNF595	2931	chr4:60046:+	CHMP1A	16209	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	ZNF595->chr4:53179-88099:+,zinc_finger_protein_595,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
YD15_SALIVARY_GLAND	EIF1--FTH1	9	0	EIF1	1112	chr17:39845248:+	FTH1	7999	chr11:61734918:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1921	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	YD15_SALIVARY_GLAND	1	1	0.1921	TRUE	0	0	0	2	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	CEP164--NCL	6	0	CEP164	23919	chr11:117261845:+	NCL	50472	chr2:232319980:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1281	0	CEP164->centrosomal_protein_164,chr11:117185273-117283984:+,NCL->chr2:232318242-232348352:-,nucleolin	YD15_SALIVARY_GLAND	1	1	0.1281	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	FAF2--CLIP1	4	0	FAF2	10282	chr5:175923664:+	CLIP1	32293	chr12:122837333:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0854	0	FAF2->Fas_associated_factor_family_member_2,chr5:175874629-175937075:+,CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-	YD15_SALIVARY_GLAND	1	1	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	LGMN--CLSTN1	4	0	LGMN	8720	chr14:93183725:-	CLSTN1	35693	chr1:9794129:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0854	0	LGMN->chr14:93170152-93215047:-,legumain,CLSTN1->calsyntenin_1,chr1:9789084-9884584:-	YD15_SALIVARY_GLAND	1	1	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	ANXA2P2--CTD-2192J16.22	3	0	ANXA2P2	1402	chr9:33624624:+	CTD-2192J16.22	8221	chr19:12754755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	ANXA2P2->annexin_A2_pseudogene_2,chr9:33624223-33625532:+,CTD-2192J16.22->chr19:12754645-12759211:-	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	ATP2C1--DNMT1	3	0	ATP2C1	16803	chr3:130678185:+	DNMT1	54568	chr19:10277361:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0	ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+,DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	CITED4--NANS	3	0	CITED4	1163	chr1:41327856:-	NANS	5406	chr9:100819136:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	CITED4->Cbp/p300_interacting_transactivator_with_Glu/Asp_rich_carboxy-terminal_domain_4,Oncogene{Bushman},chr1:41326729-41328018:-,NANS->N-acetylneuraminate_synthase,chr9:100819021-100845357:+	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	FLCN--CYB5D2	3	0	FLCN	7335	chr17:17129546:-	CYB5D2	23542	chr17:4046675:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	FLCN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:17115526-17140502:-,folliculin,CYB5D2->chr17:4046462-4090605:+,cytochrome_b5_domain_containing_2	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	MOGS--ACTG1	3	0	MOGS	1097	chr2:74692441:-	ACTG1	11169	chr17:79479386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0	MOGS->chr2:74688184-74692537:-,mannosyl-oligosaccharide_glucosidase,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	PHGDH--PKM	3	0	PHGDH	9819	chr1:120269725:+	PKM	41953	chr15:72491858:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	PHGDH->chr1:120202421-120286838:+,phosphoglycerate_dehydrogenase,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	POLM--C14orf80	3	0	POLM	9697	chr7:44112626:-	C14orf80	21378	chr14:105964192:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	POLM->chr7:44111846-44122139:-,polymerase_(DNA)_mu,C14orf80->chr14:105956192-105965912:+,chromosome_14_open_reading_frame_80	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	RGS19--UBC	3	0	RGS19	5008	chr20:62704994:-	UBC	11613	chr12:125397903:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	RGS19->Oncogene{Bushman},chr20:62704534-62711323:-,regulator_of_G-protein_signaling_19,UBC->chr12:125396150-125401914:-,ubiquitin_C	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	SP1--YWHAZ	3	0	SP1	5483	chr12:53800404:+	YWHAZ	20542	chr8:101960906:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	SP1->Sp1_transcription_factor,chr12:53773960-53810230:+,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	USP22--TRIM25	3	0	USP22	16408	chr17:20906268:-	TRIM25	36003	chr17:54965828:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22,TRIM25->chr17:54965270-54991399:-,tripartite_motif_containing_25	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	VPS52--C18orf25	3	0	VPS52	11112	chr6:33218545:-	C18orf25	20816	chr18:43843229:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	VPS52->VPS52,_GARP_complex_subunit,chr6:33218049-33239824:-,C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	ACYP1--THAP4	2	0	ACYP1	2370	chr14:75530657:-	THAP4	14996	chr2:242545888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	ACYP1->acylphosphatase_1,chr14:75519924-75536186:-,THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	BABAM1--SFI1	2	0	BABAM1	1178	chr19:17378336:+	SFI1	45460	chr22:32009128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	BABAM1->BRISC_and_BRCA1_A_complex_member_1,chr19:17378159-17392058:+,SFI1->SFI1_centrin_binding_protein,chr22:31884674-32014572:+	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	GMPS--UGP2	2	0	GMPS	1362	chr3:155588686:+	UGP2	33336	chr2:64083440:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	GMPS->Oncogene{Bushman},chr3:155588325-155661815:+,guanine_monophosphate_synthase,UGP2->UDP-glucose_pyrophosphorylase_2,chr2:64068074-64118696:+	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	HIF1A--RP11-47I22.3	2	0	HIF1A	1327	chr14:62162557:+	RP11-47I22.3	28952	chr14:62124323:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	3	0	1	3	TRUE	ACH-000836
YD15_SALIVARY_GLAND	INPP4B--MRPS6	2	0	INPP4B	26437	chr4:143324091:-	MRPS6	62739	chr21:35475134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	LAMC1--HMGN3	2	0	LAMC1	16274	chr1:183096539:+	HMGN3	38720	chr6:79911443:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1,HMGN3->chr6:79910962-79944406:-,high_mobility_group_nucleosomal_binding_domain_3	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	LRBA--CCNB2	2	0	LRBA	55567	chr4:151336590:-	CCNB2	74512	chr15:59399756:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,CCNB2->chr15:59397277-59417244:+,cyclin_B2	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	OIP5--NUSAP1	2	0	OIP5	1707	chr15:41624113:-	NUSAP1	19019	chr15:41663725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_INVERSION:-:+:[73],OIP5->Opa_interacting_protein_5,chr15:41601466-41624819:-,NUSAP1->chr15:41624892-41673248:+,nucleolar_and_spindle_associated_protein_1	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	SEC61B--RTEL1	2	0	SEC61B	1303	chr9:101984648:+	RTEL1	21800	chr20:62316876:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	SEC61B->Sec61_translocon_beta_subunit,chr9:101984346-101992897:+,RTEL1->chr20:62289163-62328416:+,regulator_of_telomere_elongation_helicase_1	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	UBE2I--RP11-1035H13.3	2	0	UBE2I	4725	chr16:1359272:+	RP11-1035H13.3	26374	chr16:18800440:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I,RP11-1035H13.3->chr16:18799385-18812841:-	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	IPO7--SLC22A18AS	1	1	IPO7	1226	chr11:9406394:+	SLC22A18AS	35727	chr11:2909865:-	ONLY_REF_SPLICE	YES	7	1	0.22	0.67	0.0213	0.0213	IPO7->chr11:9406169-9469673:+,importin_7,SLC22A18AS->chr11:2909010-2924970:-,solute_carrier_family_22_member_18_antisense	YD15_SALIVARY_GLAND	0.22	0.67	0.0426	TRUE	0	0	0	2	0	TRUE	ACH-000836
SKNBE2_AUTONOMIC_GANGLIA	MELK--P4HA1	157	40	MELK	14843	chr9:36651874:+	P4HA1	39782	chr10:74774047:-	ONLY_REF_SPLICE	YES	57	18	0.78	0.92	1.4772	0.3764	MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1	SKNBE2_AUTONOMIC_GANGLIA	0.78	0.92	1.8536	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MLLT10--AC130710.1	128	39	MLLT10	21051	chr10:21971186:+	AC130710.1	40167	chr2:16221020:+	ONLY_REF_SPLICE	YES	34	3	0.83	0.98	1.2044	0.367	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,AC130710.1->chr2:16190549-16225923:+	SKNBE2_AUTONOMIC_GANGLIA	0.83	0.98	1.5714	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	TTC3--B3GALT5	127	33	TTC3	48861	chr21:38545046:+	B3GALT5	72859	chr21:41031680:+	ONLY_REF_SPLICE	YES	146	4	0.52	0.98	1.195	0.3105	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,B3GALT5->beta-1,3-galactosyltransferase_5,chr21:40928369-41045064:+	SKNBE2_AUTONOMIC_GANGLIA	0.52	0.98	1.5055	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	P4HA1--MELK	20	2	P4HA1	14691	chr10:74776604:-	MELK	38010	chr9:36657238:+	ONLY_REF_SPLICE	YES	19	55	0.54	0.29	0.1882	0.0188	P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1,MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase	SKNBE2_AUTONOMIC_GANGLIA	0.29	0.54	0.207	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	AC010745.2--AC142119.1	7	7	AC010745.2	1165	chr2:16405479:+	AC142119.1	6581	chr2:16245665:-	ONLY_REF_SPLICE	YES	76	1	0.16	0.93	0.0659	0.0659	AC010745.2->chr2:16405315-16410408:+,AC142119.1->chr2:16225344-16245963:-	SKNBE2_AUTONOMIC_GANGLIA	0.16	0.93	0.1318	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	AC010745.2--AC142119.1	2	8	AC010745.2	2289	chr2:16409415:+	AC142119.1	6581	chr2:16245665:-	ONLY_REF_SPLICE	YES	61	1	0.14	0.91	0.0188	0.0753	AC010745.2->chr2:16405315-16410408:+,AC142119.1->chr2:16225344-16245963:-	SKNBE2_AUTONOMIC_GANGLIA	0.14	0.91	0.0941	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	TTC3--B3GALT5	4	0	TTC3	48861	chr21:38545046:+	B3GALT5	76609	chr21:41035430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,B3GALT5->beta-1,3-galactosyltransferase_5,chr21:40928369-41045064:+	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MYCN--ATF4	3	0	MYCN	2307	chr2:16082196:+	ATF4	9542	chr22:39916639:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	MYCN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:16080686-16087129:+,v-myc_avian_myelocytomatosis_viral_oncogene_neuroblastoma_derived_homolog,ATF4->Oncogene{Bushman},activating_transcription_factor_4,chr22:39915700-39918691:+	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	AC019118.2--TRAPPC12	2	0	AC019118.2	1732	chr2:3129067:-	TRAPPC12	17818	chr2:3447550:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	AC019118.2->chr2:2898820-3129798:-,TRAPPC12->chr2:3383446-3488865:+,trafficking_protein_particle_complex_12	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	C2orf42--NDUFB2	2	0	C2orf42	1211	chr2:70475537:-	NDUFB2	23646	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	TSHZ2--RP4-723E3.1	2	0	TSHZ2	1927	chr20:51589872:+	RP4-723E3.1	23918	chr20:51147427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	TSHZ2->chr20:51588946-52111869:+,teashirt_zinc_finger_homeobox_2,RP4-723E3.1->chr20:50827184-51266970:+	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000312
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--CD68	1147	11	RP11-1143G9.4	1649	chr12:69747357:-	CD68	7122	chr17:7485173:+	INCL_NON_REF_SPLICE	YES	25	642	0.98	0.64	10.5962	0.1016	RP11-1143G9.4->chr12:69747273-69748005:-,CD68->CD68_molecule,chr17:7482785-7485429:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.98	10.6978	TRUE	0	0	0	1	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--SAMHD1	769	21	RP11-1143G9.4	1655	chr12:69747351:-	SAMHD1	22156	chr20:35520172:-	INCL_NON_REF_SPLICE	YES	22	450	0.97	0.64	7.1042	0.194	RP11-1143G9.4->chr12:69747273-69748005:-,SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.97	7.2982	TRUE	0	0	0	1	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--CD68	552	2	RP11-1143G9.4	1692	chr12:69747314:-	CD68	7184	chr17:7485235:+	INCL_NON_REF_SPLICE	YES	1	72	1	0.88	5.0995	0.0185	RP11-1143G9.4->chr12:69747273-69748005:-,CD68->CD68_molecule,chr17:7482785-7485429:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	5.118	TRUE	0	0	0	1	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--SAMHD1	506	4	RP11-1143G9.4	1565	chr12:69747441:-	SAMHD1	23275	chr20:35519053:-	INCL_NON_REF_SPLICE	NO	5918	382	0.08	0.57	4.6745	0.037	RP11-1143G9.4->chr12:69747273-69748005:-,SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.57	4.7115	TRUE	0	0	0	1	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--SAMHD1	32	21	RP11-1143G9.4	1649	chr12:69747357:-	SAMHD1	22150	chr20:35520178:-	INCL_NON_REF_SPLICE	YES	25	457	0.68	0.1	0.2956	0.194	RP11-1143G9.4->chr12:69747273-69748005:-,SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.68	0.4896	TRUE	0	0	0	1	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	32	17	KMT2A	17776	chr11:118355029:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	5	0	0.91	1	0.2956	0.157	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.4526	TRUE	0	0	0	4	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--SAMHD1	11	1	RP11-1143G9.4	1649	chr12:69747357:-	SAMHD1	23373	chr20:35518955:-	INCL_NON_REF_SPLICE	YES	25	303	0.32	0.04	0.1016	0.0092	RP11-1143G9.4->chr12:69747273-69748005:-,SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.32	0.1108	TRUE	0	0	0	1	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	6	0	PTMA	6535	chr2:232577168:+	HMGB2	13652	chr4:174253243:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0554	TRUE	0	0	0	4	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYZ--CCT2	5	0	LYZ	3682	chr12:69746078:+	CCT2	12770	chr12:69983265:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0462	0	LYZ->chr12:69742121-69748014:+,lysozyme,CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0462	TRUE	1	6	0	5	1	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ORC4--ARHGAP15	2	0	ORC4	1946	chr2:148778202:-	ARHGAP15	47123	chr2:144313977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx&tcga_normals:1/3694=0.03%,ORC4->chr2:148687968-148779147:-,origin_recognition_complex_subunit_4,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000168
COLO680N_OESOPHAGUS	PPP2CA--LINC00491	250	147	PPP2CA	1383	chr5:133561451:-	LINC00491	21617	chr5:101945470:-	ONLY_REF_SPLICE	YES	105	4	0.79	0.99	2.397	1.4094	PPP2CA->chr5:133530025-133561833:-,protein_phosphatase_2_catalytic_subunit_alpha,LINC00491->chr5:101944860-102007263:-,long_intergenic_non-protein_coding_RNA_491	COLO680N_OESOPHAGUS	0.79	0.99	3.8064	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	PPP2CA--LINC00491	29	166	PPP2CA	1383	chr5:133561451:-	LINC00491	18334	chr5:101971995:-	ONLY_REF_SPLICE	YES	105	1	0.65	0.99	0.2781	1.5916	PPP2CA->chr5:133530025-133561833:-,protein_phosphatase_2_catalytic_subunit_alpha,LINC00491->chr5:101944860-102007263:-,long_intergenic_non-protein_coding_RNA_491	COLO680N_OESOPHAGUS	0.65	0.99	1.8697	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	RPS6KB1--VMP1	56	16	RPS6KB1	15604	chr17:58018304:+	VMP1	36266	chr17:57889031:+	ONLY_REF_SPLICE	YES	71	334	0.5	0.18	0.5369	0.1534	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	COLO680N_OESOPHAGUS	0.18	0.5	0.6903	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	GOLGA7--RP11-94H18.1	37	26	GOLGA7	2723	chr8:41355180:+	RP11-94H18.1	12544	chr8:29702967:-	ONLY_REF_SPLICE	YES	187	0	0.25	1	0.3548	0.2493	GOLGA7->chr8:41347915-41368499:+,golgin_A7,RP11-94H18.1->chr8:29672520-29712059:-	COLO680N_OESOPHAGUS	0.25	1	0.6041	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	BLACE--PKD1L2	36	3	BLACE	1036	chr7:155160594:-	PKD1L2	47151	chr16:81175130:-	INCL_NON_REF_SPLICE	YES	0	7	1	0.85	0.3452	0.0288	BLACE->B-cell_acute_lymphoblastic_leukemia_expressed,chr7:155149680-155160629:-,PKD1L2->chr16:81134480-81253975:-,polycystin_1_like_2_(gene/pseudogene)	COLO680N_OESOPHAGUS	0.85	1	0.374	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	PWWP2B--LYST	30	20	PWWP2B	3848	chr10:134219793:+	LYST	70841	chr1:235856786:-	ONLY_REF_SPLICE	YES	53	14	0.49	0.78	0.2876	0.1918	{Klijn_CCL:Head-Neck=1},PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator	COLO680N_OESOPHAGUS	0.49	0.78	0.4794	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	SALL4--RP11-111I12.1	19	31	SALL4	1242	chr20:50418818:-	RP11-111I12.1	14881	chr1:30502337:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1822	0.2972	SALL4->chr20:50400581-50419059:-,spalt-like_transcription_factor_4,RP11-111I12.1->chr1:30486799-30510459:-	COLO680N_OESOPHAGUS	1	1	0.4794	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	MTUS1--TACC1	20	14	MTUS1	25593	chr8:17532695:-	TACC1	42402	chr8:38599869:+	ONLY_REF_SPLICE	YES	37	0	0.48	1	0.1918	0.1342	MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	COLO680N_OESOPHAGUS	0.48	1	0.326	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	BLACE--PKD1L2	18	8	BLACE	1126	chr7:155160504:-	PKD1L2	47151	chr16:81175130:-	ONLY_REF_SPLICE	YES	0	7	1	0.79	0.1726	0.0767	BLACE->B-cell_acute_lymphoblastic_leukemia_expressed,chr7:155149680-155160629:-,PKD1L2->chr16:81134480-81253975:-,polycystin_1_like_2_(gene/pseudogene)	COLO680N_OESOPHAGUS	0.79	1	0.2493	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	SALL4--RP11-111I12.1	6	34	SALL4	2030	chr20:50418030:-	RP11-111I12.1	14881	chr1:30502337:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.0575	0.326	SALL4->chr20:50400581-50419059:-,spalt-like_transcription_factor_4,RP11-111I12.1->chr1:30486799-30510459:-	COLO680N_OESOPHAGUS	0.98	1	0.3835	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	ITGB4--TXNIP	11	0	ITGB4	26684	chr17:73752573:+	TXNIP	33492	chr1:145440950:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1055	0	ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4,TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein	COLO680N_OESOPHAGUS	1	1	0.1055	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	SCMH1--ROR1	10	1	SCMH1	1096	chr1:41707731:-	ROR1	38855	chr1:64643111:+	ONLY_REF_SPLICE	YES	1	9	0.92	0.55	0.0959	0.0096	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),ROR1->chr1:64239693-64647181:+,receptor_tyrosine_kinase-like_orphan_receptor_1	COLO680N_OESOPHAGUS	0.55	0.92	0.1055	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	SALL4--RP11-111I12.1	1	34	SALL4	3178	chr20:50413965:-	RP11-111I12.1	14881	chr1:30502337:-	ONLY_REF_SPLICE	YES	3	0	0.92	1	0.0096	0.326	SALL4->chr20:50400581-50419059:-,spalt-like_transcription_factor_4,RP11-111I12.1->chr1:30486799-30510459:-	COLO680N_OESOPHAGUS	0.92	1	0.3356	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	PWWP2B--LYST	5	5	PWWP2B	3545	chr10:134219490:+	LYST	70841	chr1:235856786:-	ONLY_REF_SPLICE	YES	39	14	0.2	0.42	0.0479	0.0479	{Klijn_CCL:Head-Neck=1},PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator	COLO680N_OESOPHAGUS	0.2	0.42	0.0958	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	EXTL3-AS1--CCDC25	5	4	EXTL3-AS1	4493	chr8:28555489:-	CCDC25	15542	chr8:27606115:-	INCL_NON_REF_SPLICE	YES	3	80	0.75	0.1	0.0479	0.0384	EXTL3-AS1->EXTL3_antisense_RNA_1,chr8:28553718-28558981:-,CCDC25->chr8:27590835-27630170:-,coiled-coil_domain_containing_25	COLO680N_OESOPHAGUS	0.1	0.75	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	MTUS1--TACC1	3	8	MTUS1	25593	chr8:17532695:-	TACC1	49043	chr8:38646222:+	ONLY_REF_SPLICE	YES	37	65	0.23	0.14	0.0288	0.0767	MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	COLO680N_OESOPHAGUS	0.14	0.23	0.1055	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	PYGM--ATL3	4	1	PYGM	3519	chr11:64525251:-	ATL3	20260	chr11:63420047:-	ONLY_REF_SPLICE	YES	0	75	1	0.06	0.0384	0.0096	PYGM->chr11:64513861-64527769:-,phosphorylase,_glycogen,_muscle,ATL3->atlastin_GTPase_3,chr11:63391559-63439393:-	COLO680N_OESOPHAGUS	0.06	1	0.048	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	MTUS1--TACC1	1	11	MTUS1	25593	chr8:17532695:-	TACC1	43503	chr8:38602413:+	ONLY_REF_SPLICE	YES	37	4	0.24	0.75	0.0096	0.1055	MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	COLO680N_OESOPHAGUS	0.24	0.75	0.1151	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	PWWP2B--LYST	2	6	PWWP2B	3848	chr10:134219793:+	LYST	71978	chr1:235850347:-	ONLY_REF_SPLICE	YES	53	31	0.13	0.21	0.0192	0.0575	{Klijn_CCL:Head-Neck=1},PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator	COLO680N_OESOPHAGUS	0.13	0.21	0.0767	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	MTUS1--TACC1	1	8	MTUS1	25593	chr8:17532695:-	TACC1	47896	chr8:38645075:+	ONLY_REF_SPLICE	YES	37	40	0.2	0.18	0.0096	0.0767	MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	COLO680N_OESOPHAGUS	0.18	0.2	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	CTD-2410N18.5--SLCO6A1	2	2	CTD-2410N18.5	1312	chr5:133561451:-	SLCO6A1	8014	chr5:101816138:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0.0192	CTD-2410N18.5->chr5:133502861-133561762:-,SLCO6A1->chr5:101707486-101834720:-,solute_carrier_organic_anion_transporter_family_member_6A1	COLO680N_OESOPHAGUS	1	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	MTUS1--TACC1	1	5	MTUS1	23284	chr8:17541837:-	TACC1	49043	chr8:38646222:+	ONLY_REF_SPLICE	YES	39	65	0.13	0.08	0.0096	0.0479	MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	COLO680N_OESOPHAGUS	0.08	0.13	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	ATP2A2--MED13L	2	0	ATP2A2	3040	chr12:110720600:+	MED13L	58747	chr12:116413543:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	EDEM3--GLRX5	2	0	EDEM3	22757	chr1:184663178:-	GLRX5	33427	chr14:96010284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	EDEM3->ER_degradation_enhancing_alpha-mannosidase_like_protein_3,chr1:184659365-184724047:-,GLRX5->chr14:95999840-96011061:+,glutaredoxin_5	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	IFT140--ATXN2L	2	0	IFT140	21093	chr16:1607936:-	ATXN2L	41909	chr16:28841190:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	IFT140->chr16:1560428-1662111:-,intraflagellar_transport_140,ATXN2L->ataxin_2_like,chr16:28834356-28848558:+	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	IFT81--NUP205	2	0	IFT81	5388	chr12:110570441:+	NUP205	59161	chr7:135309912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	IFT81->chr12:110562140-110656602:+,intraflagellar_transport_81,NUP205->chr7:135242667-135333505:+,nucleoporin_205kDa	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	NQO2--MKI67	2	0	NQO2	9651	chr6:3006793:+	MKI67	21923	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	2	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	SNHG16--MITD1	2	0	SNHG16	1092	chr17:74553939:+	MITD1	16979	chr2:99787115:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,MITD1->chr2:99777890-99797521:-,microtubule_interacting_and_trafficking_domain_containing_1	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	VMP1--LYG1	2	0	VMP1	16122	chr17:57915573:+	LYG1	26487	chr2:99912165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,LYG1->chr2:99900701-99921205:-,lysozyme_g1	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	ZNF506--NABP1	2	0	ZNF506	4535	chr19:19916840:-	NABP1	22526	chr2:192548455:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	ZNF506->chr19:19896648-19932560:-,zinc_finger_protein_506,NABP1->chr2:192542794-192561385:+,nucleic_acid_binding_protein_1	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	RBM45--FASTKD1	1	1	RBM45	8975	chr2:178990911:+	FASTKD1	25447	chr2:170413807:-	ONLY_REF_SPLICE	YES	7	30	0.22	0.06	0.0096	0.0096	RBM45->RNA_binding_motif_protein_45,chr2:178977151-179003738:+,FASTKD1->FAST_kinase_domains_1,chr2:170386259-170430385:-	COLO680N_OESOPHAGUS	0.06	0.22	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
CADOES1_BONE	EWSR1--ERG	238	77	EWSR1	11554	chr22:29683123:+	ERG	42460	chr21:39764366:-	ONLY_REF_SPLICE	YES	317	0	0.5	1	2.6082	0.8438	Cosmic{samples=1639,mutations=122,papers=88},Mitelman{SA_Ewing=2},chimerdb_omim:{Ewingtumors},chimerdb_pubmed{Intraabdominal desmoplastic small round cell tumor,Ewing's tumor,Desmoplastic small roundcell tumour,Ewing sarcoma,haematopoietic tumour,Ewing sarcoma family of tumors (ESFT),Extraskeletal Ewing's sarcoma,Ewing family tumors (EFTs),soft tissue sarcomas (STSs)},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	CADOES1_BONE	0.5	1	3.452	TRUE	0	0	0	1	0	TRUE	ACH-000210
CADOES1_BONE	EWSR1--ERG	1	77	EWSR1	11554	chr22:29683123:+	ERG	41249	chr21:39767502:-	ONLY_REF_SPLICE	YES	317	0	0.2	1	0.011	0.8438	Cosmic{samples=1639,mutations=122,papers=88},Mitelman{SA_Ewing=2},chimerdb_omim:{Ewingtumors},chimerdb_pubmed{Intraabdominal desmoplastic small round cell tumor,Ewing's tumor,Desmoplastic small roundcell tumour,Ewing sarcoma,haematopoietic tumour,Ewing sarcoma family of tumors (ESFT),Extraskeletal Ewing's sarcoma,Ewing family tumors (EFTs),soft tissue sarcomas (STSs)},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	CADOES1_BONE	0.2	1	0.8548	TRUE	0	0	0	1	0	TRUE	ACH-000210
CADOES1_BONE	SLC7A5--ATP5G2	4	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	CADOES1_BONE	1	1	0.0438	TRUE	0	0	0	7	0	TRUE	ACH-000210
CADOES1_BONE	POLE--ANKLE2	2	0	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	CADOES1_BONE	1	1	0.0219	TRUE	0	0	0	11	0	TRUE	ACH-000210
HS944T_SKIN	SSX2IP--YTHDF2	28	6	SSX2IP	5335	chr1:85135364:-	YTHDF2	24743	chr1:29064170:+	ONLY_REF_SPLICE	YES	127	401	0.21	0.08	0.2847	0.061	SSX2IP->chr1:85109390-85156486:-,synovial_sarcoma,_X_breakpoint_2_interacting_protein,YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+	HS944T_SKIN	0.08	0.21	0.3457	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	RBMS1--AC096559.1	20	6	RBMS1	1506	chr2:161349800:-	AC096559.1	45089	chr2:12698332:+	ONLY_REF_SPLICE	YES	20	0	0.57	1	0.2034	0.061	RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,AC096559.1->chr2:11988748-12718474:+	HS944T_SKIN	0.57	1	0.2644	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	BCAS3--STAT5B	5	2	BCAS3	2550	chr17:58756901:+	STAT5B	65549	chr17:40371860:-	ONLY_REF_SPLICE	YES	6	24	0.54	0.23	0.0508	0.0203	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B	HS944T_SKIN	0.23	0.54	0.0711	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	STAT5B--BCAS3	5	0	STAT5B	6020	chr17:40375400:-	BCAS3	24933	chr17:58761343:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0508	0	STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	HS944T_SKIN	1	1	0.0508	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	SSX2IP--YTHDF2	2	6	SSX2IP	5335	chr1:85135364:-	YTHDF2	24132	chr1:29063559:+	ONLY_REF_SPLICE	YES	127	37	0.06	0.18	0.0203	0.061	SSX2IP->chr1:85109390-85156486:-,synovial_sarcoma,_X_breakpoint_2_interacting_protein,YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+	HS944T_SKIN	0.06	0.18	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	CAPZA1--RPL30	2	0	CAPZA1	1711	chr1:113162505:+	RPL30	17032	chr8:99057627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CAPZA1->capping_actin_protein_of_muscle_Z-line_alpha_subunit_1,chr1:113161795-113214241:+,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	EPS15--WDR78	2	0	EPS15	2172	chr1:51946945:-	WDR78	62233	chr1:67288200:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,WDR78->WD_repeat_domain_78,chr1:67278568-67390570:-	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	GINS1--FNDC3B	2	0	GINS1	3730	chr20:25394490:+	FNDC3B	54880	chr3:172096060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GINS1->GINS_complex_subunit_1,chr20:25388363-25433264:+,FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	LSAMP--TMCC1	2	0	LSAMP	5056	chr3:116163724:-	TMCC1	34566	chr3:129567255:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	MIR146A--RNF145	2	0	MIR146A	1173	chr5:159895447:+	RNF145	10783	chr5:158630664:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	MIR146A->chr5:159895275-159914433:+,microRNA_146a,RNF145->chr5:158584417-158637061:-,ring_finger_protein_145	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	NELFA--POLN	2	0	NELFA	5759	chr4:2010477:-	POLN	39926	chr4:2133017:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_REARRANGEMENT:-:[30015],NELFA->chr4:1984441-2043630:-,negative_elongation_factor_complex_member_A,POLN->chr4:2073645-2243848:-,polymerase_(DNA)_nu	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	SRFBP1--CTC-487M23.8	2	0	SRFBP1	1108	chr5:121297763:+	CTC-487M23.8	19646	chr5:112227300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	SRFBP1->chr5:121297656-121411265:+,serum_response_factor_binding_protein_1,CTC-487M23.8->chr5:112196885-112228776:+	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	TRIP12--CAB39	2	0	TRIP12	2222	chr2:230786596:-	CAB39	53720	chr2:231624674:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12,CAB39->calcium_binding_protein_39,chr2:231577560-231685790:+	HS944T_SKIN	1	1	0.0203	TRUE	0	1	0	1	1	TRUE	ACH-000632
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	260	7	PTMA	6054	chr2:232576687:+	HMGB2	13627	chr4:174253268:-	INCL_NON_REF_SPLICE	YES	6079	1368	0.04	0.16	2.213	0.0596	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.16	2.2726	TRUE	0	0	0	4	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFKBIZ--ANKRD28	26	8	NFKBIZ	1194	chr3:101547028:+	ANKRD28	24443	chr3:15807819:-	ONLY_REF_SPLICE	YES	16	28	0.68	0.55	0.2213	0.0681	HGNC_GENEFAM,NFKBIZ->NFKB_inhibitor_zeta,chr3:101546835-101579866:+,ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.68	0.2894	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBBP8--PIEZO2	9	1	RBBP8	28529	chr18:20596887:+	PIEZO2	36178	chr18:10979658:-	ONLY_REF_SPLICE	YES	119	0	0.08	1	0.0766	0.0085	RBBP8->Oncogene{Bushman},chr18:20378224-20606451:+,retinoblastoma_binding_protein_8,PIEZO2->chr18:10666480-11148587:-,piezo_type_mechanosensitive_ion_channel_component_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0851	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLCO4A1--CABLES2	5	0	SLCO4A1	1109	chr20:61273905:+	CABLES2	19429	chr20:60971648:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,CABLES2->Cdk5_and_Abl_enzyme_substrate_2,chr20:60963688-60982341:-	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0426	TRUE	0	0	0	2	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LSP1--CD81	4	0	LSP1	1228	chr11:1874427:+	CD81	29503	chr11:2411642:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	LSP1->chr11:1874200-1913497:+,chr13:25591541-25591675:+,lymphocyte-specific_protein_1,CD81->CD81_molecule,chr11:2397407-2418649:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFKBIZ--ANKRD28	1	9	NFKBIZ	1194	chr3:101547028:+	ANKRD28	23224	chr3:15823162:-	ONLY_REF_SPLICE	YES	16	31	0.38	0.24	0.0085	0.0766	HGNC_GENEFAM,NFKBIZ->NFKB_inhibitor_zeta,chr3:101546835-101579866:+,ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.38	0.0851	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMGN2--GSTP1	3	0	HMGN2	1164	chr1:26799104:+	GSTP1	8063	chr11:67351605:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx&tcga_normals:1/3694=0.03%,HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	TRUE	0	0	0	2	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARFRP1--EEF1D	2	0	ARFRP1	2669	chr20:62337709:-	EEF1D	29253	chr8:144663498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	ARFRP1->ADP_ribosylation_factor_related_protein_1,ArcherDX_panel,FoundationOne_panel,chr20:62329996-62339377:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	2	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C10orf137--UROS	2	0	C10orf137	3677	chr10:127411703:+	UROS	45296	chr10:127477574:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	LOCAL_INVERSION:+:-:[24434],C10orf137->Oncogene{Bushman},chr10:127408084-127452712:+,UROS->chr10:127477146-127511817:-,uroporphyrinogen_III_synthase	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LSP1--SEPT9	2	0	LSP1	1228	chr11:1874427:+	SEPT9	56743	chr17:75486824:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	LSP1->chr11:1874200-1913497:+,chr13:25591541-25591675:+,lymphocyte-specific_protein_1,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT1--KDM4B	2	0	MLLT1	5710	chr19:6226988:-	KDM4B	41567	chr19:5143978:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1,KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPW--PHF20	2	0	NPW	1177	chr16:2060103:+	PHF20	9882	chr20:34389413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	NPW->chr16:2059927-2070756:+,neuropeptide_W,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	1	10	0	18	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-18I14.10--FZR1	2	0	RP11-18I14.10	6611	chr10:104215184:+	FZR1	20579	chr19:3534419:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	RP11-18I14.10->chr10:104209574-104220863:+,FZR1->chr19:3506271-3538328:+,fizzy/cell_division_cycle_20_related_1	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLCO4A1--EEF1D	2	0	SLCO4A1	1109	chr20:61273905:+	EEF1D	29184	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	2	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF37A--SDCCAG8	2	0	ZNF37A	3297	chr10:38385560:+	SDCCAG8	25187	chr1:243468015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	ZNF37A->chr10:38383264-38414472:+,zinc_finger_protein_37A,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFKBIZ--ANKRD28	1	3	NFKBIZ	1194	chr3:101547028:+	ANKRD28	26591	chr3:15793327:-	ONLY_REF_SPLICE	NO	16	27	0.2	0.13	0.0085	0.0255	HGNC_GENEFAM,NFKBIZ->NFKB_inhibitor_zeta,chr3:101546835-101579866:+,ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.2	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000220
SW780_URINARY_TRACT	RNF213--BAIAP2	77	29	RNF213	47750	chr17:78335688:+	BAIAP2	84268	chr17:79027468:+	ONLY_REF_SPLICE	YES	30	37	0.78	0.74	0.5027	0.1893	{Klijn_CCL:Urinary_Bladder=1},RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+	SW780_URINARY_TRACT	0.74	0.78	0.692	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	FGFR3--BAIAP2L1	34	18	FGFR3	9864	chr4:1808661:+	BAIAP2L1	16891	chr7:97991744:-	ONLY_REF_SPLICE	YES	17	2	0.75	0.96	0.222	0.1175	Cosmic{samples=31,mutations=1,papers=3},{Klijn_CCL:Urinary_Bladder=1},FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-	SW780_URINARY_TRACT	0.75	0.96	0.3395	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	GSN--NMRK1	21	12	GSN	9717	chr9:124043840:+	NMRK1	39938	chr9:77698066:-	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.1371	0.0783	GSN->Oncogene{Bushman},chr9:123970072-124095121:+,gelsolin,NMRK1->chr9:77675489-77703133:-,nicotinamide_riboside_kinase_1	SW780_URINARY_TRACT	0.97	1	0.2154	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RP4-717I23.3--EVI5	8	6	RP4-717I23.3	5620	chr1:93802934:-	EVI5	47264	chr1:92979527:-	ONLY_REF_SPLICE	YES	3	2	0.82	0.88	0.0522	0.0392	RP4-717I23.3->chr1:93727743-93811582:-,EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5	SW780_URINARY_TRACT	0.82	0.88	0.0914	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RABGAP1--PCSK5	7	7	RABGAP1	3561	chr9:125719488:+	PCSK5	43675	chr9:78682871:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0457	0.0457	RABGAP1->RAB_GTPase_activating_protein_1,chr9:125703112-125867145:+,PCSK5->chr9:78505560-78977255:+,proprotein_convertase_subtilisin/kexin_type_5	SW780_URINARY_TRACT	0.93	1	0.0914	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PSMD11--RHOT1	7	6	PSMD11	14684	chr17:30807649:+	RHOT1	26578	chr17:30509776:+	ONLY_REF_SPLICE	YES	52	9	0.2	0.59	0.0457	0.0392	PSMD11->chr17:30771279-30810336:+,proteasome_26S_subunit,_non-ATPase_11,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	SW780_URINARY_TRACT	0.2	0.59	0.0849	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PPP1R12A--RP1-78O14.1	6	8	PPP1R12A	17469	chr12:80199372:-	RP1-78O14.1	41348	chr12:79787705:-	ONLY_REF_SPLICE	YES	16	0	0.47	1	0.0392	0.0522	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	SW780_URINARY_TRACT	0.47	1	0.0914	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	CTNNA3--LIPK	7	2	CTNNA3	13854	chr10:68381450:-	LIPK	41073	chr10:90499753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0457	0.0131	{Klijn_CCL:Urinary_Bladder=1},CTNNA3->catenin_alpha_3,chr10:67672276-69455927:-,LIPK->chr10:90484301-90512543:+,lipase_family_member_K	SW780_URINARY_TRACT	1	1	0.0588	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	USP54--VSTM4	6	0	USP54	1017	chr10:75385695:-	VSTM4	48587	chr10:50256629:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,VSTM4->V-set_and_transmembrane_domain_containing_4,chr10:50222290-50323554:-	SW780_URINARY_TRACT	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RBM6--DOCK3	5	1	RBM6	8238	chr3:50012825:+	DOCK3	39179	chr3:51101879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0.0065	{Klijn_CCL:Urinary_Bladder=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	SW780_URINARY_TRACT	1	1	0.0391	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RBM6--DOCK3	4	2	RBM6	10420	chr3:50036946:+	DOCK3	39179	chr3:51101879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0.0131	{Klijn_CCL:Urinary_Bladder=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	SW780_URINARY_TRACT	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	BRI3BP--UBC	4	0	BRI3BP	2347	chr12:125497122:+	UBC	14535	chr12:125399161:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	SW780_URINARY_TRACT	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	CDCP1--MCM3AP	4	0	CDCP1	9002	chr3:45135030:-	MCM3AP	39739	chr21:47674750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	CDCP1->CUB_domain_containing_protein_1,chr3:45123770-45187914:-,MCM3AP->chr21:47655047-47706211:-,minichromosome_maintenance_complex_component_3_associated_protein	SW780_URINARY_TRACT	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	GTF3C2--VANGL1	4	0	GTF3C2	14948	chr2:27549586:-	VANGL1	30304	chr1:116234727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,VANGL1->VANGL_planar_cell_polarity_protein_1,chr1:116184574-116240845:+	SW780_URINARY_TRACT	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	IQCD--SOD1	4	0	IQCD	3149	chr12:113645264:-	SOD1	16602	chr21:33040788:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	IQCD->IQ_motif_containing_D,chr12:113633246-113658899:-,SOD1->chr21:33031935-33041244:+,superoxide_dismutase_1,_soluble	SW780_URINARY_TRACT	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RP5-1028K7.2--SAT2	4	0	RP5-1028K7.2	3361	chr17:38679813:+	SAT2	8908	chr17:7531184:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	RP5-1028K7.2->chr17:38673278-38683254:+,SAT2->chr17:7529552-7531194:-,spermidine/spermine_N1-acetyltransferase_family_member_2	SW780_URINARY_TRACT	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	SRCAP--MFSD8	4	0	SRCAP	17889	chr16:30735306:+	MFSD8	47059	chr4:128841337:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+,MFSD8->chr4:128838960-128887150:-,major_facilitator_superfamily_domain_containing_8	SW780_URINARY_TRACT	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ZNF488--CTNNA3	3	3	ZNF488	5671	chr10:48364901:+	CTNNA3	23532	chr10:68535282:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0196	0.0196	ZNF488->chr10:48355024-48373866:+,zinc_finger_protein_488,CTNNA3->catenin_alpha_3,chr10:67672276-69455927:-	SW780_URINARY_TRACT	0.55	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ASAP1--CNOT7	3	1	ASAP1	7774	chr8:131370263:-	CNOT7	56886	chr8:17090046:-	ONLY_REF_SPLICE	YES	3	62	0.57	0.06	0.0196	0.0065	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,CNOT7->CCR4-NOT_transcription_complex_subunit_7,chr8:17086737-17104387:-	SW780_URINARY_TRACT	0.06	0.57	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ABCA7--TAGLN	3	0	ABCA7	16548	chr19:1056419:+	TAGLN	32167	chr11:117075251:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	ABCA7->ATP_binding_cassette_subfamily_A_member_7,chr19:1040102-1065571:+,TAGLN->Oncogene{Bushman},chr11:117070037-117075498:+,transgelin	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ARL8B--TOP2B	3	0	ARL8B	6918	chr3:5216099:+	TOP2B	14846	chr3:25686961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	ARL8B->ADP_ribosylation_factor_like_GTPase_8B,chr3:5163905-5222596:+,TOP2B->Oncogene{Bushman},chr3:25639475-25706398:-,topoisomerase_(DNA)_II_beta	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	BCL2L1--COQ9	3	0	BCL2L1	4780	chr20:30253445:-	COQ9	17334	chr16:57493551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-,COQ9->chr16:57481337-57495187:+,coenzyme_Q9	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	CRYZL1--RECQL5	3	0	CRYZL1	18433	chr21:34968037:-	RECQL5	26414	chr17:73662651:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	CRYZL1->chr21:34961647-35016232:-,crystallin_zeta_like_1,RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	DDOST--LMTK3	3	0	DDOST	4659	chr1:20981131:-	LMTK3	25319	chr19:48988626:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	DDOST->chr1:20978270-20988000:-,dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_non-catalytic_subunit,LMTK3->chr19:48988528-49016446:-,lemur_tyrosine_kinase_3	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	DYNC1H1--TKT	3	0	DYNC1H1	41552	chr14:102500755:+	TKT	71560	chr3:53262347:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	DYNC1H1->chr14:102430865-102517129:+,dynein_cytoplasmic_1_heavy_chain_1,TKT->chr3:53258723-53290068:-,transketolase	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	HIST1H2AC--FIP1L1	3	0	HIST1H2AC	1489	chr6:26124861:+	FIP1L1	16397	chr4:54292039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	HIST1H2AC->chr6:26124373-26139344:+,histone_cluster_1,_H2ac,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	HOOK2--CIAO1	3	0	HOOK2	7962	chr19:12884931:-	CIAO1	27247	chr2:96938552:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,CIAO1->chr2:96931870-96939087:+,cytosolic_iron-sulfur_assembly_component_1	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	IST1--TBRG4	3	0	IST1	14851	chr16:71956525:+	TBRG4	29800	chr7:45143785:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	IST1->IST1,_ESCRT-III_associated_factor,chr16:71879899-71962913:+,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	LIN52--NPC2	3	0	LIN52	6088	chr14:74567941:+	NPC2	15676	chr14:74953139:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	LIN52->chr14:74551499-74667936:+,lin-52_DREAM_MuvB_core_complex_component,NPC2->NPC_intracellular_cholesterol_transporter_2,chr14:74942895-74960880:-	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	MLXIP--AMIGO2	3	0	MLXIP	8484	chr12:122618099:+	AMIGO2	26604	chr12:47471525:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	MLXIP->MLX_interacting_protein,chr12:122516628-122631894:+,AMIGO2->adhesion_molecule_with_Ig-like_domain_2,chr12:47469490-47473734:-	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	OGG1--TSIX	3	0	OGG1	7294	chr3:9800115:+	TSIX	47552	chrX:73040895:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	OGG1->8-oxoguanine_DNA_glycosylase,chr3:9791628-9829903:+,TSIX->TSIX_transcript,_XIST_antisense_RNA,chrX:73012040-73049066:+	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PRDX4--ALS2CL	3	0	PRDX4	4042	chrX:23689729:+	ALS2CL	31095	chr3:46713439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	PRDX4->chrX:23682379-23704516:+,peroxiredoxin_4,ALS2CL->ALS2_C-terminal_like,Oncogene{Bushman},chr3:46710487-46735194:-	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PRKRIP1--SRRT	3	0	PRKRIP1	9230	chr7:102045130:+	SRRT	18373	chr7:100478906:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,SRRT->chr7:100472733-100486285:+,serrate,_RNA_effector_molecule	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RAD21--SKP1	3	0	RAD21	15647	chr8:117859827:-	SKP1	29025	chr5:133494277:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-,SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RERE--CAPN8	3	0	RERE	8908	chr1:8674620:-	CAPN8	58128	chr1:223718212:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,CAPN8->calpain_8,chr1:223711349-223853436:-	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RPS6--LUC7L3	3	0	RPS6	2493	chr9:19378760:-	LUC7L3	18701	chr17:48823174:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	GTEx&tcga_normals:2/3694=0.05%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,LUC7L3->LUC7_like_3_pre-mRNA_splicing_factor,chr17:48796905-48833574:+	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	SAE1--IARS	3	0	SAE1	11514	chr19:47673180:+	IARS	41404	chr9:95014167:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	SERF2--TM9SF4	3	0	SERF2	6121	chr15:44086005:+	TM9SF4	33463	chr20:30753039:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,TM9SF4->chr20:30697309-30755061:+,transmembrane_9_superfamily_member_4	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	SLC27A4--TTPAL	3	0	SLC27A4	9466	chr9:131117715:+	TTPAL	17379	chr20:43108893:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	SLC27A4->chr9:131102925-131123749:+,solute_carrier_family_27_member_4,TTPAL->chr20:43104526-43123244:+,tocopherol_(alpha)_transfer_protein-like	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	SLC7A1--SNX12	3	0	SLC7A1	18710	chr13:30084863:-	SNX12	27553	chrX:70279555:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1,SNX12->chrX:70279094-70288273:-,sorting_nexin_12	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	TCF19--TOP1	3	0	TCF19	5124	chr6:31131181:+	TOP1	30356	chr20:39750686:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	TCF19->chr6:31126319-31134936:+,transcription_factor_19,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	TMEM38A--EEF1A1P5	3	0	TMEM38A	4257	chr19:16793319:+	EEF1A1P5	12668	chr9:135896222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	TMEM38A->chr19:16771938-16800840:+,transmembrane_protein_38A,EEF1A1P5->chr9:135894816-135896553:+,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_5	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	TPP1--SUMF2	3	0	TPP1	6072	chr11:6635621:-	SUMF2	16284	chr7:56144475:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	TPP1->chr11:6634000-6640692:-,tripeptidyl_peptidase_1,SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	FHOD3--SLC25A4	2	1	FHOD3	1287	chr18:33877963:+	SLC25A4	41621	chr4:186065918:+	ONLY_REF_SPLICE	YES	0	51	1	0.06	0.0131	0.0065	{Klijn_CCL:Urinary_Bladder=1},FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,SLC25A4->chr4:186064395-186071536:+,solute_carrier_family_25_member_4	SW780_URINARY_TRACT	0.06	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ABCD3--CAMSAP2	2	0	ABCD3	5849	chr1:94930429:+	CAMSAP2	32975	chr1:200776504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+,CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	AC097499.1--PDS5B	2	0	AC097499.1	1402	chr2:126468947:+	PDS5B	6836	chr13:33222891:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	AC097499.1->chr2:126468546-126523419:+,PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	15	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ARHGAP32--ZNF431	2	0	ARHGAP32	3404	chr11:129034214:-	ZNF431	43961	chr19:21365426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ARHGAP32->Rho_GTPase_activating_protein_32,chr11:128834955-129149219:-,ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ARHGEF7--THOC2	2	0	ARHGEF7	29143	chr13:111940790:+	THOC2	68641	chrX:122756711:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,THOC2->THO_complex_2,chrX:122734412-122866906:-	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	CACUL1--ADD3	2	0	CACUL1	12855	chr10:120445495:-	ADD3	30360	chr10:111860383:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	CACUL1->CDK2_associated_cullin_domain_1,chr10:120433679-120514761:-,ADD3->Oncogene{Bushman},adducin_3,chr10:111756126-111895323:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	CEP89--DHDH	2	0	CEP89	1156	chr19:33462742:-	DHDH	30574	chr19:49439289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,DHDH->chr19:49436939-49448226:+,dihydrodiol_dehydrogenase	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	CRHR1--UGCG	2	0	CRHR1	2396	chr17:43707524:+	UGCG	20113	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	CRHR1->chr17:43699267-43913194:+,corticotropin_releasing_hormone_receptor_1,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	DDI2--GANAB	2	0	DDI2	2439	chr1:15953293:+	GANAB	26543	chr11:62407203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	DDI2->DNA_damage_inducible_1_homolog_2,chr1:15943995-15995539:+,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	DLC1--CUL2	2	0	DLC1	10024	chr8:13133771:-	CUL2	37294	chr10:35360267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,CUL2->chr10:35297479-35379570:-,cullin_2	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ETF1--CNST	2	0	ETF1	1204	chr5:137878786:-	CNST	18330	chr1:246754814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1,CNST->chr1:246729746-246831886:+,consortin,_connexin_sorting_protein	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	EXOC4--TNPO3	2	0	EXOC4	25520	chr7:133502297:+	TNPO3	44767	chr7:128658211:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,TNPO3->chr7:128594948-128695198:-,transportin_3	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	GPRC5A--CSDE1	2	0	GPRC5A	1883	chr12:13044598:+	CSDE1	29259	chr1:115273043:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	GPRC5A->G_protein-coupled_receptor_class_C_group_5_member_A,chr12:13043716-13070871:+,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	GSN--NMRK1	2	0	GSN	8624	chr9:124030497:+	NMRK1	39938	chr9:77698066:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	GSN->Oncogene{Bushman},chr9:123970072-124095121:+,gelsolin,NMRK1->chr9:77675489-77703133:-,nicotinamide_riboside_kinase_1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	HNRNPR--FAM214A	2	0	HNRNPR	6441	chr1:23650049:-	FAM214A	36922	chr15:52885933:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	HSP90B1--NMI	2	0	HSP90B1	10960	chr12:104337097:+	NMI	26377	chr2:152128246:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1,NMI->N-myc_and_STAT_interactor,chr2:152126979-152146571:-	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	LIMK1--CLIP2	2	0	LIMK1	3210	chr7:73500174:+	CLIP2	39563	chr7:73803433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	LSR--NEK9	2	0	LSR	4450	chr19:35749967:+	NEK9	35496	chr14:75551389:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	LSR->chr19:35739233-35758867:+,lipolysis_stimulated_lipoprotein_receptor,NEK9->NIMA_related_kinase_9,chr14:75548822-75594047:-	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	LZTS2--BAIAP2	2	0	LZTS2	1617	chr10:102756991:+	BAIAP2	25864	chr17:79058632:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	LZTS2->chr10:102756375-102767593:+,leucine_zipper,_putative_tumor_suppressor_2,BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	MDN1--ENOSF1	2	0	MDN1	9520	chr6:90491118:-	ENOSF1	117371	chr18:674406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	MDN1->chr6:90352218-90529442:-,midasin_AAA_ATPase_1,ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	MECOM--FBXO34	2	0	MECOM	3693	chr3:169098975:-	FBXO34	38665	chr14:55817099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,FBXO34->F-box_protein_34,chr14:55738021-55828636:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PITPNB--MICAL3	2	0	PITPNB	4210	chr22:28306952:-	MICAL3	22186	chr22:18389652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta,MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PPP1R12A--SETD5	2	0	PPP1R12A	17469	chr12:80199372:-	SETD5	41384	chr3:9466151:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,SETD5->SET_domain_containing_5,chr3:9439299-9520924:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PTPRF--PPCS	2	0	PTPRF	21449	chr1:44069204:+	PPCS	39307	chr1:42922918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F,PPCS->chr1:42921788-42939056:+,phosphopantothenoylcysteine_synthetase	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RBM6--DOCK3	2	0	RBM6	3185	chr3:50000118:+	DOCK3	43555	chr3:51183980:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	{Klijn_CCL:Urinary_Bladder=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RBPMS--VCL	2	0	RBPMS	1731	chr8:30242674:+	VCL	56203	chr10:75877781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	RBPMS->RNA_binding_protein_with_multiple_splicing,chr8:30241944-30429778:+,VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RECQL4--PPP1R16A	2	0	RECQL4	6205	chr8:145738025:-	PPP1R16A	19185	chr8:145726225:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	LOCAL_INVERSION:-:+:[9163],RECQL4->Oncogene{Bushman},RecQ_like_helicase_4,chr8:145736667-145743229:-,PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RP11-162A12.2--ZNF761	2	0	RP11-162A12.2	1280	chr18:74533972:-	ZNF761	9577	chr19:53949480:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	RP11-162A12.2->chr18:74506688-74534251:-,ZNF761->chr19:53935227-53961515:+,zinc_finger_protein_761	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RP11-435B5.4--ANO6	2	0	RP11-435B5.4	2843	chr1:143465380:-	ANO6	43259	chr12:45810482:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	RP11-435B5.4->chr1:143354963-143467632:-,ANO6->anoctamin_6,chr12:45609770-45834187:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RP11-758M4.1--PCNXL4	2	0	RP11-758M4.1	2222	chr8:75525175:+	PCNXL4	23007	chr14:60582437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	RP11-758M4.1->chr8:75512010-75735548:+,PCNXL4->chr14:60558629-60635851:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	SEC63--SERINC1	2	0	SEC63	1304	chr6:108279090:-	SERINC1	33910	chr6:122779826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	SEC63->SEC63_homolog,_protein_translocation_regulator,chr6:108188960-108279393:-,SERINC1->chr6:122764499-122792967:-,serine_incorporator_1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	STK4--ERI1	2	0	STK4	15640	chr20:43653771:+	ERI1	35517	chr8:8887302:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	STK4->Oncogene{Bushman},chr20:43595115-43708600:+,serine/threonine_kinase_4,ERI1->chr8:8859657-8974256:+,exoribonuclease_1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	TBK1--ATF2	2	0	TBK1	1308	chr12:64845967:+	ATF2	36945	chr2:175962321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	TMEM123--YAP1	2	0	TMEM123	5695	chr11:102319543:-	YAP1	21477	chr11:102076624:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	{Klijn_CCL:Head-Neck=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	3	0	2	0	TRUE	ACH-000384
SW780_URINARY_TRACT	VAC14--GIN1	2	0	VAC14	1365	chr16:70834700:-	GIN1	36185	chr5:102423876:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	VAC14->Oncogene{Bushman},Vac14,_PIKFYVE_complex_component,chr16:70721342-70835064:-,GIN1->chr5:102421704-102455855:-,gypsy_retrotransposon_integrase_1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ZNF26--TRAFD1	2	0	ZNF26	1509	chr12:133563459:+	TRAFD1	17996	chr12:112572542:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ZNF26->chr12:133562951-133589154:+,zinc_finger_protein_26,TRAFD1->TRAF-type_zinc_finger_domain_containing_1,chr12:112563305-112591407:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ZRANB3--HS6ST1	2	0	ZRANB3	1110	chr2:136288697:-	HS6ST1	42168	chr2:129026444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3,HS6ST1->chr2:128994290-129076151:-,heparan_sulfate_6-O-sulfotransferase_1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ZNF488--CTNNA3	1	3	ZNF488	4155	chr10:48359854:+	CTNNA3	23532	chr10:68535282:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0065	0.0196	ZNF488->chr10:48355024-48373866:+,zinc_finger_protein_488,CTNNA3->catenin_alpha_3,chr10:67672276-69455927:-	SW780_URINARY_TRACT	0.67	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PPP1R12A--RP1-78O14.1	1	2	PPP1R12A	15835	chr12:80201006:-	RP1-78O14.1	41348	chr12:79787705:-	ONLY_REF_SPLICE	NO	20	0	0.13	1	0.0065	0.0131	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	SW780_URINARY_TRACT	0.13	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ZNF488--CTNNA3	1	2	ZNF488	2651	chr10:48357057:+	CTNNA3	23532	chr10:68535282:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0065	0.0131	ZNF488->chr10:48355024-48373866:+,zinc_finger_protein_488,CTNNA3->catenin_alpha_3,chr10:67672276-69455927:-	SW780_URINARY_TRACT	0.75	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	CBX5--TTC3	1	1	CBX5	1095	chr12:54673792:-	TTC3	40262	chr21:38480692:+	ONLY_REF_SPLICE	YES	1	14	0.67	0.12	0.0065	0.0065	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},CBX5->chr12:54624724-54673886:-,chromobox_5,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SW780_URINARY_TRACT	0.12	0.67	0.013	TRUE	0	0	0	1	0	TRUE	ACH-000384
DMS454_LUNG	MTSS1--RP11-1082L8.3	148	139	MTSS1	1606	chr8:125740125:-	RP11-1082L8.3	30931	chr8:125852504:-	ONLY_REF_SPLICE	YES	892	0	0.24	1	1.581	1.4848	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-1082L8.3->chr8:125847126-125869758:-	DMS454_LUNG	0.24	1	3.0658	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	PTPRN2--CADM2	122	38	PTPRN2	1231	chr7:158380250:-	CADM2	36682	chr3:85932441:+	ONLY_REF_SPLICE	YES	26	6	0.86	0.96	1.3032	0.4059	{Klijn_CCL:Lung=1},PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,CADM2->cell_adhesion_molecule_2,chr3:85008132-86123579:+	DMS454_LUNG	0.86	0.96	1.7091	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RP11-64B16.2--SEL1L2	75	58	RP11-64B16.2	1211	chr12:119632865:+	SEL1L2	15371	chr20:13869160:-	INCL_NON_REF_SPLICE	YES	31	1	0.81	0.99	0.8012	0.6196	RP11-64B16.2->chr12:119632655-119633199:+,SEL1L2->SEL1L2_ERAD_E3_ligase_adaptor_subunit,chr20:13829893-13977089:-	DMS454_LUNG	0.81	0.99	1.4208	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MTSS1--RP11-1082L8.3	27	129	MTSS1	1606	chr8:125740125:-	RP11-1082L8.3	30935	chr8:125852500:-	INCL_NON_REF_SPLICE	YES	892	0	0.15	1	0.2884	1.378	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-1082L8.3->chr8:125847126-125869758:-	DMS454_LUNG	0.15	1	1.6664	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MEMO1--KCNB1	44	15	MEMO1	2044	chr2:32235256:-	KCNB1	22339	chr20:47991529:-	ONLY_REF_SPLICE	YES	34	2	0.63	0.97	0.47	0.1602	MEMO1->chr2:32090129-32236299:-,mediator_of_cell_motility_1,KCNB1->chr20:47980414-48099184:-,potassium_voltage-gated_channel_subfamily_B_member_1	DMS454_LUNG	0.63	0.97	0.6302	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RPN2--ENTPD4	33	21	RPN2	13657	chr20:35854205:+	ENTPD4	33758	chr8:23294771:-	ONLY_REF_SPLICE	YES	967	51	0.05	0.51	0.3525	0.2243	RPN2->chr20:35806813-35870022:+,ribophorin_II,ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4	DMS454_LUNG	0.05	0.51	0.5768	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	C4BPA--C4BPB	35	11	C4BPA	7414	chr1:207300240:+	C4BPB	21582	chr1:207269867:+	ONLY_REF_SPLICE	YES	92	142	0.33	0.24	0.3739	0.1175	PROTCLUST,{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[4269],C4BPA->chr1:207277607-207318317:+,complement_component_4_binding_protein_alpha,C4BPB->chr1:207262187-207273338:+,complement_component_4_binding_protein_beta	DMS454_LUNG	0.24	0.33	0.4914	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MACF1--RPS27A	30	28	MACF1	115549	chr1:39934404:+	RPS27A	126148	chr2:55459944:+	ONLY_REF_SPLICE	YES	411	30	0.12	0.66	0.3205	0.2991	{Klijn_CCL:Lung=1},MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	DMS454_LUNG	0.12	0.66	0.6196	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	R3HDM2--PPP6R3	32	6	R3HDM2	2356	chr12:57789532:-	PPP6R3	49093	chr11:68337216:+	ONLY_REF_SPLICE	YES	8	328	0.83	0.1	0.3418	0.0641	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3	DMS454_LUNG	0.1	0.83	0.4059	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	SMG1--ANKS4B	25	27	SMG1	45034	chr16:18852887:-	ANKS4B	72069	chr16:21261052:+	ONLY_REF_SPLICE	YES	73	217	0.42	0.19	0.2671	0.2884	SMG1->SMG1_phosphatidylinositol_3-kinase-related_kinase,chr16:18816175-18937776:-,ANKS4B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_4B,chr16:21244986-21263750:+	DMS454_LUNG	0.19	0.42	0.5555	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MTO1--KCNQ5	26	20	MTO1	9658	chr6:74192343:+	KCNQ5	42974	chr6:73900296:+	ONLY_REF_SPLICE	YES	84	0	0.35	1	0.2777	0.2136	{Klijn_CCL:Lung=1},MTO1->chr6:74171301-74218959:+,mitochondrial_tRNA_translation_optimization_1,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	DMS454_LUNG	0.35	1	0.4913	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	USP32--DHX40P1	26	12	USP32	3790	chr17:58469243:-	DHX40P1	54042	chr17:58054131:-	ONLY_REF_SPLICE	YES	22	60	0.63	0.39	0.2777	0.1282	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,DHX40P1->DEAH-box_helicase_40_pseudogene_1,chr17:58053370-58079745:-	DMS454_LUNG	0.39	0.63	0.4059	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RPH3AL--TENM1	21	11	RPH3AL	22520	chr17:69414:-	TENM1	43094	chrX:123699410:-	ONLY_REF_SPLICE	YES	2	1	0.94	0.97	0.2243	0.1175	RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),TENM1->chrX:123509753-124097666:-,teneurin_transmembrane_protein_1	DMS454_LUNG	0.94	0.97	0.3418	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	WTAPP1--YAP1	13	23	WTAPP1	10546	chr11:102703637:+	YAP1	18475	chr11:101984875:+	ONLY_REF_SPLICE	YES	0	6	1	0.86	0.1389	0.2457	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	DMS454_LUNG	0.86	1	0.3846	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MET--CAV1	13	11	MET	4452	chr7:116340338:+	CAV1	32070	chr7:116166579:+	ONLY_REF_SPLICE	YES	212	30	0.1	0.44	0.1389	0.1175	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	DMS454_LUNG	0.1	0.44	0.2564	TRUE	0	0	0	2	0	TRUE	ACH-000844
DMS454_LUNG	WTAPP1--C11orf70	7	34	WTAPP1	10546	chr11:102703637:+	C11orf70	19231	chr11:101946604:+	ONLY_REF_SPLICE	YES	0	17	1	0.71	0.0748	0.3632	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,C11orf70->chr11:101918174-101955291:+,chromosome_11_open_reading_frame_70	DMS454_LUNG	0.71	1	0.438	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RHOT2--PIGQ	13	7	RHOT2	5420	chr16:722505:+	PIGQ	15863	chr16:624250:+	INCL_NON_REF_SPLICE	YES	116	63	0.15	0.24	0.1389	0.0748	LOCAL_REARRANGEMENT:+:[83950],RHOT2->chr16:718086-724174:+,ras_homolog_family_member_T2,PIGQ->chr16:616995-634136:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_Q	DMS454_LUNG	0.15	0.24	0.2137	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RPH3AL--TENM1	11	15	RPH3AL	23800	chr17:65445:-	TENM1	43094	chrX:123699410:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1175	0.1602	RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),TENM1->chrX:123509753-124097666:-,teneurin_transmembrane_protein_1	DMS454_LUNG	0.96	1	0.2777	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CAMK2B--RABEP2	8	2	CAMK2B	3127	chr7:44364956:-	RABEP2	44428	chr16:28926103:-	ONLY_REF_SPLICE	YES	1	86	0.91	0.1	0.0855	0.0214	CAMK2B->Oncogene{Bushman},calcium/calmodulin_dependent_protein_kinase_II_beta,chr7:44256749-44374176:-,RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2	DMS454_LUNG	0.1	0.91	0.1069	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	TTF2--PTGFRN	5	6	TTF2	2346	chr1:117605095:+	PTGFRN	38392	chr1:117509533:+	ONLY_REF_SPLICE	YES	67	67	0.14	0.14	0.0534	0.0641	LOCAL_REARRANGEMENT:+:[69945],TTF2->chr1:117602925-117650075:+,transcription_termination_factor,_RNA_polymerase_II,PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor	DMS454_LUNG	0.14	0.14	0.1175	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ZMAT4--RP11-706J10.1	5	6	ZMAT4	1151	chr8:40755202:-	RP11-706J10.1	19925	chr8:77388181:+	ONLY_REF_SPLICE	YES	15	0	0.42	1	0.0534	0.0641	ZMAT4->chr8:40388109-40755352:-,zinc_finger_matrin-type_4,RP11-706J10.1->chr8:77318889-77436591:+	DMS454_LUNG	0.42	1	0.1175	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ST3GAL3--FAM76A	5	5	ST3GAL3	3470	chr1:44202051:+	FAM76A	35756	chr1:28087006:+	ONLY_REF_SPLICE	YES	17	49	0.37	0.17	0.0534	0.0534	ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,FAM76A->chr1:28052490-28089633:+,family_with_sequence_similarity_76_member_A	DMS454_LUNG	0.17	0.37	0.1068	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	WTAPP1--C11orf70	4	2	WTAPP1	10546	chr11:102703637:+	C11orf70	20470	chr11:101951946:+	ONLY_REF_SPLICE	YES	0	22	1	0.21	0.0427	0.0214	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,C11orf70->chr11:101918174-101955291:+,chromosome_11_open_reading_frame_70	DMS454_LUNG	0.21	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RP4-758J18.2--CSF3R	4	0	RP4-758J18.2	2749	chr1:1336650:+	CSF3R	8267	chr1:36947138:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	RP4-758J18.2->chr1:1334902-1337426:+,CSF3R->Oncogene{Bushman},chr1:36931644-36948879:-,colony_stimulating_factor_3_receptor	DMS454_LUNG	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	VDAC1--CTD-2410N18.5	4	0	VDAC1	1487	chr5:133340338:-	CTD-2410N18.5	16152	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,CTD-2410N18.5->chr5:133502861-133561762:-	DMS454_LUNG	1	1	0.0427	TRUE	0	0	0	6	0	TRUE	ACH-000844
DMS454_LUNG	ATP7B--ANO4	3	2	ATP7B	1208	chr13:52585423:-	ANO4	43882	chr12:101413812:+	ONLY_REF_SPLICE	YES	6	1	0.45	0.83	0.032	0.0214	ATP7B->ATPase_copper_transporting_beta,chr13:52506809-52585630:-,ANO4->anoctamin_4,chr12:101111304-101522419:+	DMS454_LUNG	0.45	0.83	0.0534	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MET--CAV1	1	9	MET	4452	chr7:116340338:+	CAV1	32103	chr7:116166612:+	ONLY_REF_SPLICE	YES	212	31	0.05	0.24	0.0107	0.0961	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	DMS454_LUNG	0.05	0.24	0.1068	TRUE	0	0	0	2	0	TRUE	ACH-000844
DMS454_LUNG	KCNB1--TGM2	3	0	KCNB1	1734	chr20:48098451:-	TGM2	19211	chr20:36790001:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	KCNB1->chr20:47980414-48099184:-,potassium_voltage-gated_channel_subfamily_B_member_1,TGM2->chr20:36756863-36794980:-,transglutaminase_2	DMS454_LUNG	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	NSMCE1--CTC-391G2.1	3	0	NSMCE1	1632	chr16:27279484:-	CTC-391G2.1	19287	chr16:23206342:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NSMCE1->NSE1_homolog,_SMC5-SMC6_complex_component,chr16:27236312-27280115:-,CTC-391G2.1->chr16:23206199-23224425:-	DMS454_LUNG	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RP11-127I20.7--GLYR1	3	0	RP11-127I20.7	2116	chr16:4796146:-	GLYR1	15520	chr16:4873908:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:-:[50638],RP11-127I20.7->chr16:4780116-4802566:-,GLYR1->chr16:4853204-4897343:-,glyoxylate_reductase_1_homolog	DMS454_LUNG	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	EEA1--RP11-654D12.2	1	5	EEA1	6949	chr12:93251051:-	RP11-654D12.2	44152	chr12:90314844:+	ONLY_REF_SPLICE	NO	25	0	0.19	1	0.0107	0.0534	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,RP11-654D12.2->chr12:90276442-90383066:+	DMS454_LUNG	0.19	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RP11-296O14.3--TNFSF4	2	1	RP11-296O14.3	1985	chr1:173429517:-	TNFSF4	11987	chr1:173157708:-	ONLY_REF_SPLICE	YES	1	6	0.75	0.33	0.0214	0.0107	RP11-296O14.3->chr1:173386932-173430501:-,TNFSF4->chr1:173152873-173176452:-,tumor_necrosis_factor_superfamily_member_4	DMS454_LUNG	0.33	0.75	0.0321	TRUE	0	3	0	3	3	TRUE	ACH-000844
DMS454_LUNG	WTAPP1--C11orf70	2	1	WTAPP1	10546	chr11:102703637:+	C11orf70	21691	chr11:101953802:+	ONLY_REF_SPLICE	YES	0	27	1	0.1	0.0214	0.0107	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,C11orf70->chr11:101918174-101955291:+,chromosome_11_open_reading_frame_70	DMS454_LUNG	0.1	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ACAP3--NOC4L	2	0	ACAP3	1168	chr1:1244822:-	NOC4L	26079	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},ACAP3->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_3,chr1:1227756-1244989:-,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ACBD6--NSL1	2	0	ACBD6	7351	chr1:180366651:-	NSL1	23449	chr1:212912943:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,NSL1->NSL1,_MIS12_kinetochore_complex_component,chr1:212899495-212965124:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	15	0	TRUE	ACH-000844
DMS454_LUNG	ASPSCR1--CDC14B	2	0	ASPSCR1	6589	chr17:79943483:+	CDC14B	40969	chr9:99278074:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+,CDC14B->cell_division_cycle_14B,chr9:99252523-99382112:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CD99L2--HMGB3	2	0	CD99L2	1295	chrX:150066995:-	HMGB3	22175	chrX:150154068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LOCAL_INVERSION:-:+:[81693],CD99L2->CD99_molecule_like_2,chrX:149934810-150067289:-,HMGB3->chrX:150148982-150159248:+,high_mobility_group_box_3	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CERS5--LIMA1	2	0	CERS5	14794	chr12:50528329:-	LIMA1	24670	chr12:50625493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LOCAL_REARRANGEMENT:-:[8283],CERS5->ceramide_synthase_5,chr12:50523575-50561288:-,LIMA1->LIM_domain_and_actin_binding_1,chr12:50569571-50677329:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CHFR--GAK	2	0	CHFR	2239	chr12:133522207:-	GAK	52006	chr4:877874:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CSTB--ARRDC3	2	0	CSTB	1242	chr21:45196085:-	ARRDC3	15189	chr5:90669655:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CSTB->Oncogene{Bushman},chr21:45192393-45196326:-,cystatin_B,ARRDC3->arrestin_domain_containing_3,chr5:90664541-90679176:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CTC-260F20.3--DSP	2	0	CTC-260F20.3	1106	chr19:19627141:+	DSP	35196	chr6:7582875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CTC-260F20.3->chr19:19627036-19646885:+,DSP->chr6:7541808-7586950:+,desmoplakin	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CTD-2017D11.1--POT1	2	0	CTD-2017D11.1	3885	chr19:24232350:+	POT1	30667	chr7:124469396:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CTD-2017D11.1->chr19:24216247-24249711:+,POT1->chr7:124462440-124570037:-,protection_of_telomeres_1	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CUX1--PCMTD2	2	0	CUX1	24123	chr7:101838883:+	PCMTD2	69488	chr20:62904574:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,PCMTD2->chr20:62887094-62926855:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_2	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	EIF4EBP1--FHOD3	2	0	EIF4EBP1	1378	chr8:37888236:+	FHOD3	35816	chr18:34322700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	EIF4EBP1->Oncogene{Bushman},chr8:37887859-37917883:+,eukaryotic_translation_initiation_factor_4E_binding_protein_1,FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ESRP1--PABPC1	2	0	ESRP1	9603	chr8:95680478:+	PABPC1	31500	chr8:101717901:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	HGNC_GENEFAM,ESRP1->chr8:95653302-95719694:+,epithelial_splicing_regulatory_protein_1,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	EXD3--PNPLA7	2	0	EXD3	1149	chr9:140317566:-	PNPLA7	59278	chr9:140358908:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_FI:{Adrenal_Gland=[count:1=pct:1.2],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Subcutaneous=1,Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:-:[36690],EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	KIAA1598--PDZD8	2	0	KIAA1598	7331	chr10:118728163:-	PDZD8	34913	chr10:119049859:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx&tcga_normals:4/3694=0.11%,KIAA1598->chr10:118643742-118886097:-,PDZD8->PDZ_domain_containing_8,chr10:119040000-119134978:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	LIPI--PAN3	2	0	LIPI	11401	chr21:15516944:-	PAN3	24303	chr13:28830429:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LIPI->chr21:15481134-15583166:-,lipase_I,PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MAP7--PEX7	2	0	MAP7	1478	chr6:136871480:-	PEX7	35528	chr6:137219280:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Colon_-_Transverse=1},MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7,PEX7->chr6:137143717-137235075:+,peroxisomal_biogenesis_factor_7	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MBNL1--FGF12	2	0	MBNL1	6738	chr3:152018156:+	FGF12	34131	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MCF2L--CUL4A	2	0	MCF2L	11149	chr13:113623772:+	CUL4A	64905	chr13:113873259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,CUL4A->chr13:113862552-113919399:+,cullin_4A	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MGAT4A--ATP13A3	2	0	MGAT4A	3575	chr2:99342702:-	ATP13A3	61394	chr3:194126845:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A,ATP13A3->ATPase_13A3,chr3:194123401-194219093:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MRPS28--POMK	2	0	MRPS28	3779	chr8:80915234:-	POMK	11986	chr8:42957648:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	MRPS28->chr8:80830952-80942524:-,mitochondrial_ribosomal_protein_S28,POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	NAA30--GOLGA8A	2	0	NAA30	2185	chr14:57858446:+	GOLGA8A	29810	chr15:34692960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NAA30->N(alpha)-acetyltransferase_30,_NatC_catalytic_subunit,chr14:57857262-57882635:+,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	NAA30--GOLGA8A	2	0	NAA30	2185	chr14:57858446:+	GOLGA8A	19219	chr15:34839183:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NAA30->N(alpha)-acetyltransferase_30,_NatC_catalytic_subunit,chr14:57857262-57882635:+,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	NIF3L1--ANAPC4	2	0	NIF3L1	1326	chr2:201754375:+	ANAPC4	24635	chr4:25404593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NIF3L1->NGG1_interacting_factor_3_like_1,chr2:201754050-201768655:+,ANAPC4->anaphase_promoting_complex_subunit_4,chr4:25378835-25420120:+	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	PNISR--PSMD13	2	0	PNISR	1117	chr6:99873091:-	PSMD13	24102	chr11:244041:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,PSMD13->chr11:236546-252983:+,proteasome_26S_subunit,_non-ATPase_13	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RNF13--CDKN2B-AS1	2	0	RNF13	12719	chr3:149639014:+	CDKN2B-AS1	22762	chr9:22046316:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RP11-417J8.3--YTHDC1	2	0	RP11-417J8.3	3008	chr1:142621059:+	YTHDC1	30550	chr4:69180041:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	RP11-417J8.3->chr1:142618769-142729975:+,YTHDC1->YTH_domain_containing_1,chr4:69176105-69215807:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	SCYL3--SLC19A2	2	0	SCYL3	2695	chr1:169857817:-	SLC19A2	26303	chr1:169439424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SCYL3->SCY1_like_pseudokinase_3,chr1:169818772-169863408:-,SLC19A2->chr1:169433147-169455241:-,solute_carrier_family_19_member_2	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	SERINC1--HSF2	2	0	SERINC1	1124	chr6:122792844:-	HSF2	14915	chr6:122733518:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LOCAL_INVERSION:-:+:[10235],SERINC1->chr6:122764499-122792967:-,serine_incorporator_1,HSF2->chr6:122720691-122754264:+,heat_shock_transcription_factor_2	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	SPAST--ATP9A	2	0	SPAST	1636	chr2:32289315:+	ATP9A	34026	chr20:50292747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SPAST->chr2:32288680-32382706:+,spastin,ATP9A->ATPase_phospholipid_transporting_9A_(putative),chr20:50213053-50385173:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	SUCO--RFWD2	2	0	SUCO	2149	chr1:172502637:+	RFWD2	43960	chr1:176055026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_v2:{count=3;pct=0.03%;dist=Adipose_-_Subcutaneous=1,Spleen=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SUCO->SUN_domain_containing_ossification_factor,chr1:172501489-172580971:+,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	SYCP2L--ZNF81	2	0	SYCP2L	24854	chr6:10942979:+	ZNF81	42088	chrX:47747398:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SYCP2L->chr6:10748027-10979553:+,synaptonemal_complex_protein_2_like,ZNF81->chrX:47696301-47861960:+,zinc_finger_protein_81	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	TDP1--C6orf89	2	0	TDP1	24473	chr14:90499558:+	C6orf89	38590	chr6:36870056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TDP1->chr14:90421283-90511106:+,tyrosyl-DNA_phosphodiesterase_1,C6orf89->chr6:36839646-36896740:+,chromosome_6_open_reading_frame_89	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	TNS3--DDC	2	0	TNS3	1508	chr7:47621649:-	DDC	58252	chr7:50571757:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TNS3->chr7:47314752-47622156:-,tensin_3,DDC->chr7:50526134-50633154:-,dopa_decarboxylase	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	VPS13A--BBS4	2	0	VPS13A	35238	chr9:79923014:+	BBS4	98874	chr15:73023646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	VPS13A->chr9:79792269-80036457:+,vacuolar_protein_sorting_13_homolog_A,BBS4->Bardet-Biedl_syndrome_4,chr15:72978527-73030817:+	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ZMYND8--GART	2	0	ZMYND8	6534	chr20:45976600:-	GART	40470	chr21:34911662:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,GART->chr21:34876238-34915797:-,phosphoribosylglycinamide_formyltransferase,_phosphoribosylglycinamide_synthetase,_phosphoribosylaminoimidazole_synthetase	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	AC007392.3--AC007403.2	1	3	AC007392.3	8704	chr2:66924635:+	AC007403.2	19569	chr2:67172420:+	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0107	0.032	GTEx_FI:{Colon=[count:4=pct:2.1],Prostate=[count:3=pct:4.9],Brain=[count:3=pct:0.5],Uterus=[count:2=pct:4.7],Esophagus=[count:2=pct:0.5],Bladder=[count:1=pct:11.1]},AC007392.3->chr2:66801162-66957289:+,AC007403.2->chr2:67131568-67198594:+	DMS454_LUNG	0.57	1	0.0427	TRUE	1	4	0	3	4	TRUE	ACH-000844
DMS454_LUNG	RPH3AL--TENM1	1	3	RPH3AL	17377	chr17:131559:-	TENM1	43094	chrX:123699410:-	ONLY_REF_SPLICE	NO	16	1	0.2	0.8	0.0107	0.032	RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),TENM1->chrX:123509753-124097666:-,teneurin_transmembrane_protein_1	DMS454_LUNG	0.2	0.8	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	POMK--RP11-15G16.1	1	2	POMK	4467	chr8:42958973:+	RP11-15G16.1	11139	chr8:41297356:+	ONLY_REF_SPLICE	YES	81	0	0.04	1	0.0107	0.0214	POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,RP11-15G16.1->chr8:41292817-41297938:+	DMS454_LUNG	0.04	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ABL2--FAM20B	1	1	ABL2	1444	chr1:179198376:-	FAM20B	30518	chr1:179012850:+	ONLY_REF_SPLICE	YES	22	1	0.08	0.67	0.0107	0.0107	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},LOCAL_INVERSION:-:+:[22765],ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,FAM20B->chr1:178994939-179045697:+,family_with_sequence_similarity_20_member_B	DMS454_LUNG	0.08	0.67	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ENPP6--RP11-290F5.1	1	1	ENPP6	2481	chr4:185138732:-	RP11-290F5.1	20340	chr4:185297698:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0107	0.0107	ENPP6->chr4:185009859-185142383:-,ectonucleotide_pyrophosphatase/phosphodiesterase_6,RP11-290F5.1->chr4:185286336-185303460:-	DMS454_LUNG	0.67	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	NPHP4--CHD5	1	1	NPHP4	12548	chr1:5987709:-	CHD5	68925	chr1:6172337:-	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.0107	0.0107	NPHP4->chr1:5922871-6052533:-,nephronophthisis_4,CHD5->Oncogene{Bushman},chr1:6161853-6240183:-,chromodomain_helicase_DNA_binding_protein_5	DMS454_LUNG	0.05	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	STXBP5L--CD86	1	1	STXBP5L	5977	chr3:120764382:+	CD86	45070	chr3:121810448:+	ONLY_REF_SPLICE	YES	34	0	0.06	1	0.0107	0.0107	STXBP5L->chr3:120626919-121143608:+,syntaxin_binding_protein_5_like,CD86->CD86_molecule,chr3:121774213-121839983:+	DMS454_LUNG	0.06	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
SW1353_BONE	SEPT7--ZC4H2	5	0	SEPT7	5760	chr7:35872510:+	ZC4H2	31289	chrX:64141868:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0585	0	SEPT7->chr7:35840542-35944917:+,septin_7,ZC4H2->chrX:64136250-64254593:-,zinc_finger_C4H2-type_containing	SW1353_BONE	1	1	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	AC008440.5--UBE2H	3	0	AC008440.5	2359	chr19:54377944:-	UBE2H	18413	chr7:129472974:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	AC008440.5->chr19:54377880-54379303:-,UBE2H->chr7:129470572-129592789:-,ubiquitin_conjugating_enzyme_E2_H	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	ARIH1--ZBTB7A	3	0	ARIH1	3825	chr15:72810475:+	ZBTB7A	26328	chr19:4055245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	ARIH1->ariadne_RBR_E3_ubiquitin_protein_ligase_1,chr15:72766667-72879692:+,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	NDRG1--ATN1	3	0	NDRG1	27206	chr8:134250838:-	ATN1	36643	chr12:7045868:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-,ATN1->atrophin_1,chr12:7033626-7051484:+	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	PLIN3--CHM	3	0	PLIN3	10083	chr19:4838732:-	CHM	34489	chrX:85118239:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	PLIN3->chr19:4838353-4867780:-,perilipin_3,CHM->CHM,_Rab_escort_protein_1,chrX:85116185-85302566:-	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	PTMS--CTDNEP1	3	0	PTMS	4137	chr12:6879120:+	CTDNEP1	11473	chr17:7149620:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	PTMS->chr12:6874682-6880116:+,parathymosin,CTDNEP1->CTD_nuclear_envelope_phosphatase_1,chr17:7146910-7155810:-	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	RUFY1--SMU1	3	0	RUFY1	14509	chr5:179018705:+	SMU1	33464	chr9:33062167:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	RUFY1->RUN_and_FYVE_domain_containing_1,chr5:178977559-179037027:+,SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans)	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	SLC2A11--MBOAT2	3	0	SLC2A11	13827	chr22:24224212:+	MBOAT2	29438	chr2:9017266:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	SLC2A11->chr22:24198890-24228496:+,solute_carrier_family_2_member_11,MBOAT2->chr2:8992820-9143942:-,membrane_bound_O-acyltransferase_domain_containing_2	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	SLC2A11--MBOAT2	3	0	SLC2A11	14005	chr22:24224390:+	MBOAT2	29438	chr2:9017266:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	SLC2A11->chr22:24198890-24228496:+,solute_carrier_family_2_member_11,MBOAT2->chr2:8992820-9143942:-,membrane_bound_O-acyltransferase_domain_containing_2	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	SNAP23--RPL32	3	0	SNAP23	13609	chr15:42822007:+	RPL32	22647	chr3:12880924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	SNAP23->chr15:42783431-42837547:+,synaptosome_associated_protein_23kDa,RPL32->chr3:12875984-12883087:-,ribosomal_protein_L32	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	SRRM2--VIM	3	0	SRRM2	13126	chr16:2816143:+	VIM	23551	chr10:17271286:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,SRRM2->chr16:2802330-2822539:+,serine/arginine_repetitive_matrix_2,VIM->chr10:17270258-17279592:+,vimentin	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	STAT2--PRSS23	3	0	STAT2	5894	chr12:56744599:-	PRSS23	19740	chr11:86519334:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	STAT2->chr12:56735381-56753939:-,signal_transducer_and_activator_of_transcription_2,PRSS23->chr11:86502101-86663952:+,protease,_serine_23	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	TNFRSF12A--TICAM1	3	0	TNFRSF12A	3397	chr16:3071617:+	TICAM1	9520	chr19:4817264:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	TNFRSF12A->chr16:3068446-3072384:+,tumor_necrosis_factor_receptor_superfamily_member_12A,TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	TPCN2--IFITM10	3	0	TPCN2	6731	chr11:68831435:+	IFITM10	27687	chr11:1769349:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,IFITM10->chr11:1753640-1771821:-,interferon_induced_transmembrane_protein_10	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	AP1G1--SLC25A26	2	0	AP1G1	12580	chr16:71798549:-	SLC25A26	46129	chr3:66396788:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-,SLC25A26->chr3:66119285-66438540:+,solute_carrier_family_25_member_26	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	CADM1--SUN1	2	0	CADM1	1687	chr11:115374989:-	SUN1	36893	chr7:872142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	CADM1->cell_adhesion_molecule_1,chr11:115039938-115375675:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	CIZ1--SNW1	2	0	CIZ1	7669	chr9:130942694:-	SNW1	20731	chr14:78221463:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-,SNW1->SNW_domain_containing_1,chr14:78183942-78227550:-	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	HDLBP--SREBF2	2	0	HDLBP	2932	chr2:242254517:-	SREBF2	54485	chr22:42289121:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein,SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	RHOA--DAG1	2	0	RHOA	2179	chr3:49449253:-	DAG1	21789	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[55715],RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,DAG1->chr3:49506146-49573048:+,dystroglycan_1	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	8	0	TRUE	ACH-000418
SW1353_BONE	ROBO1--ACIN1	2	0	ROBO1	2202	chr3:79638974:-	ACIN1	59886	chr14:23538826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	ROBO1->Oncogene{Bushman},chr3:78646390-79816965:-,roundabout_guidance_receptor_1,ACIN1->apoptotic_chromatin_condensation_inducer_1,chr14:23527773-23564823:-	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	SEMA5A--KIAA0391	2	0	SEMA5A	23602	chr5:9062999:-	KIAA0391	52099	chr14:35777200:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	SEMA5A->chr5:9035138-9546187:-,semaphorin_5A,KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	SNX25--YME1L1	2	0	SNX25	17484	chr4:186267804:+	YME1L1	49784	chr10:27405274:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	SNX25->chr4:186125391-186291339:+,sorting_nexin_25,YME1L1->YME1_like_1_ATPase,chr10:27399383-27444195:-	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	TG--SLC22A25	2	0	TG	41216	chr8:134007049:+	SLC22A25	71759	chr11:62933730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	TG->chr8:133879203-134147147:+,thyroglobulin,SLC22A25->chr11:62931248-62997124:-,solute_carrier_family_22_member_25	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	AP003900.6--AC008132.1	1	1	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	3	3	0.4	0.4	0.0117	0.0117	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1353_BONE	0.4	0.4	0.0234	TRUE	0	0	0	13	0	TRUE	ACH-000418
SW1353_BONE	AP003900.6--AC008132.1	1	1	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0117	0.0117	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1353_BONE	0.4	1	0.0234	TRUE	0	0	0	16	0	TRUE	ACH-000418
SW1353_BONE	AP003900.6--AC008132.1	1	1	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0117	0.0117	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1353_BONE	0.5	1	0.0234	TRUE	0	0	0	11	0	TRUE	ACH-000418
KYSE450_OESOPHAGUS	PXN--KRT86	109	57	PXN	1155	chr12:120703420:-	KRT86	26537	chr12:52695697:+	ONLY_REF_SPLICE	YES	31	6	0.84	0.97	1.2032	0.6292	PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,KRT86->chr12:52643084-52702947:+,keratin_86	KYSE450_OESOPHAGUS	0.84	0.97	1.8324	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	PIP5K1A--SCNM1	92	88	PIP5K1A	5709	chr1:151196755:+	SCNM1	24694	chr1:151138947:+	ONLY_REF_SPLICE	YES	354	395	0.34	0.31	1.0155	0.9714	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[27652],PIP5K1A->chr1:151170425-151222012:+,phosphatidylinositol-4-phosphate_5-kinase_type_1_alpha,SCNM1->chr1:151129140-151142773:+,sodium_channel_modifier_1	KYSE450_OESOPHAGUS	0.31	0.34	1.9869	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	ABCC1--NFATC2IP	48	41	ABCC1	5790	chr16:16110478:+	NFATC2IP	45386	chr16:28963453:+	ONLY_REF_SPLICE	YES	246	110	0.27	0.45	0.5298	0.4526	{Klijn_CCL:Head-Neck=1},ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,NFATC2IP->chr16:28962128-28978418:+,nuclear_factor_of_activated_T-cells_2_interacting_protein	KYSE450_OESOPHAGUS	0.27	0.45	0.9824	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	POLRMT--PALM	47	34	POLRMT	12165	chr19:618488:-	PALM	20614	chr19:726138:+	ONLY_REF_SPLICE	YES	83	0	0.49	1	0.5188	0.3753	{Klijn_CCL:Head-Neck=1},LOCAL_INVERSION:-:+:[75356],POLRMT->chr19:617223-633597:-,polymerase_(RNA)_mitochondrial,PALM->chr19:708953-748329:+,paralemmin	KYSE450_OESOPHAGUS	0.49	1	0.8941	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	NRP1--ITGB1	48	17	NRP1	8745	chr10:33542956:-	ITGB1	54016	chr10:33212668:-	ONLY_REF_SPLICE	YES	27	157	0.71	0.29	0.5298	0.1877	HGNC_GENEFAM,{Klijn_CCL:Head-Neck=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	KYSE450_OESOPHAGUS	0.29	0.71	0.7175	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	MYO6--ME1	38	35	MYO6	1232	chr6:76459140:+	ME1	45665	chr6:84117620:-	ONLY_REF_SPLICE	YES	30	73	0.71	0.5	0.4195	0.3863	MYO6->chr6:76458909-76629254:+,myosin_VI,ME1->chr6:83920108-84140797:-,malic_enzyme_1	KYSE450_OESOPHAGUS	0.5	0.71	0.8058	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	VPS53--SRR	36	30	VPS53	26250	chr17:489510:-	SRR	58631	chr17:2218851:+	ONLY_REF_SPLICE	YES	38	8	0.63	0.89	0.3974	0.3311	VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,SRR->chr17:2206677-2228554:+,serine_racemase	KYSE450_OESOPHAGUS	0.63	0.89	0.7285	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	PHF17--RP11-447E20.1	40	10	PHF17	1254	chr4:129731032:+	RP11-447E20.1	26002	chr4:74643447:-	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.4415	0.1104	PHF17->chr4:129730779-129796379:+,RP11-447E20.1->chr4:74643353-74643777:-	KYSE450_OESOPHAGUS	0.89	1	0.5519	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	VPS35--MYLK3	32	16	VPS35	7356	chr16:46712855:-	MYLK3	31510	chr16:46766580:-	ONLY_REF_SPLICE	YES	208	2	0.19	0.96	0.3532	0.1766	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[17461],VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-,MYLK3->chr16:46740891-46824319:-,myosin_light_chain_kinase_3	KYSE450_OESOPHAGUS	0.19	0.96	0.5298	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	ABCC1--NFATC2IP	13	46	ABCC1	6852	chr16:16127027:+	NFATC2IP	45386	chr16:28963453:+	ONLY_REF_SPLICE	YES	212	110	0.22	0.35	0.1435	0.5078	{Klijn_CCL:Head-Neck=1},ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,NFATC2IP->chr16:28962128-28978418:+,nuclear_factor_of_activated_T-cells_2_interacting_protein	KYSE450_OESOPHAGUS	0.22	0.35	0.6513	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	CDC37L1--JAK2	23	6	CDC37L1	2623	chr9:4685158:+	JAK2	20134	chr9:5044403:+	ONLY_REF_SPLICE	YES	46	7	0.39	0.81	0.2539	0.0662	CDC37L1->cell_division_cycle_37_like_1,chr9:4679559-4708398:+,JAK2->ArcherDX_panel,FoundationOne_panel,Janus_kinase_2,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:4985033-5128183:+	KYSE450_OESOPHAGUS	0.39	0.81	0.3201	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	PIP5K1A--SCNM1	2	88	PIP5K1A	5836	chr1:151196882:+	SCNM1	24694	chr1:151138947:+	ONLY_REF_SPLICE	YES	373	395	0.19	0.19	0.0221	0.9714	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[27652],PIP5K1A->chr1:151170425-151222012:+,phosphatidylinositol-4-phosphate_5-kinase_type_1_alpha,SCNM1->chr1:151129140-151142773:+,sodium_channel_modifier_1	KYSE450_OESOPHAGUS	0.19	0.19	0.9935	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	CDH13--XX-CR54.1	21	9	CDH13	15137	chr16:83065823:+	XX-CR54.1	37877	chr1:248860332:+	INCL_NON_REF_SPLICE	YES	58	0	0.34	1	0.2318	0.0993	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,XX-CR54.1->chr1:248855492-248862411:+	KYSE450_OESOPHAGUS	0.34	1	0.3311	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	RP11-184M15.2--ARHGEF38	22	2	RP11-184M15.2	1095	chr4:129522468:-	ARHGEF38	13391	chr4:106557560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2428	0.0221	RP11-184M15.2->chr4:129504154-129522562:-,ARHGEF38->Rho_guanine_nucleotide_exchange_factor_38,chr4:106473777-106629250:+	KYSE450_OESOPHAGUS	1	1	0.2649	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	PXN--KRT86	6	59	PXN	1155	chr12:120703420:-	KRT86	26439	chr12:52695599:+	INCL_NON_REF_SPLICE	YES	31	0	0.68	1	0.0662	0.6513	PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,KRT86->chr12:52643084-52702947:+,keratin_86	KYSE450_OESOPHAGUS	0.68	1	0.7175	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	BMP7--RP11-611E13.2	15	3	BMP7	1925	chr20:55840761:-	RP11-611E13.2	23946	chr12:70298199:-	ONLY_REF_SPLICE	YES	84	0	0.18	1	0.1656	0.0331	BMP7->bone_morphogenetic_protein_7,chr20:55743804-55841685:-,RP11-611E13.2->chr12:70297813-70637140:-	KYSE450_OESOPHAGUS	0.18	1	0.1987	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	POLRMT--PALM	6	17	POLRMT	11948	chr19:618705:-	PALM	20614	chr19:726138:+	ONLY_REF_SPLICE	YES	73	0	0.24	1	0.0662	0.1877	{Klijn_CCL:Head-Neck=1},LOCAL_INVERSION:-:+:[75356],POLRMT->chr19:617223-633597:-,polymerase_(RNA)_mitochondrial,PALM->chr19:708953-748329:+,paralemmin	KYSE450_OESOPHAGUS	0.24	1	0.2539	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	PXN--KRT86	8	3	PXN	1155	chr12:120703420:-	KRT86	28735	chr12:52697895:+	ONLY_REF_SPLICE	YES	31	45	0.26	0.2	0.0883	0.0331	PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,KRT86->chr12:52643084-52702947:+,keratin_86	KYSE450_OESOPHAGUS	0.2	0.26	0.1214	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	MAML1--RUFY1	7	0	MAML1	1578	chr5:179160428:+	RUFY1	22487	chr5:178987026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0773	0	MAML1->chr5:179159851-179223512:+,mastermind_like_transcriptional_coactivator_1,RUFY1->RUN_and_FYVE_domain_containing_1,chr5:178977559-179037027:+	KYSE450_OESOPHAGUS	1	1	0.0773	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	NF1--RP11-848P1.9	4	8	NF1	7019	chr17:29497015:+	RP11-848P1.9	79958	chr17:29343913:+	ONLY_REF_SPLICE	YES	85	0	0.12	1	0.0442	0.0883	LOCAL_REARRANGEMENT:+:[1800],NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,RP11-848P1.9->chr17:29335515-29420145:+	KYSE450_OESOPHAGUS	0.12	1	0.1325	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	MYO6--ME1	1	19	MYO6	1232	chr6:76459140:+	ME1	46799	chr6:84108235:-	ONLY_REF_SPLICE	NO	30	88	0.4	0.19	0.011	0.2097	MYO6->chr6:76458909-76629254:+,myosin_VI,ME1->chr6:83920108-84140797:-,malic_enzyme_1	KYSE450_OESOPHAGUS	0.19	0.4	0.2207	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	PHF17--RP11-447E20.1	3	10	PHF17	1668	chr4:129731446:+	RP11-447E20.1	26002	chr4:74643447:-	INCL_NON_REF_SPLICE	YES	7	0	0.65	1	0.0331	0.1104	PHF17->chr4:129730779-129796379:+,RP11-447E20.1->chr4:74643353-74643777:-	KYSE450_OESOPHAGUS	0.65	1	0.1435	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	TIAM2--SYNJ2	5	1	TIAM2	1713	chr6:155154543:+	SYNJ2	55385	chr6:158449788:+	ONLY_REF_SPLICE	YES	13	10	0.32	0.38	0.0552	0.011	TIAM2->T-cell_lymphoma_invasion_and_metastasis_2,chr6:155153831-155578857:+,SYNJ2->chr6:158402888-158520208:+,synaptojanin_2	KYSE450_OESOPHAGUS	0.32	0.38	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	SRR--NXN	5	0	SRR	10063	chr17:2226639:+	NXN	25064	chr17:729318:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0552	0	SRR->chr17:2206677-2228554:+,serine_racemase,NXN->chr17:702553-883010:-,nucleoredoxin	KYSE450_OESOPHAGUS	1	1	0.0552	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	DLGAP1--PPP4R1	3	5	DLGAP1	1330	chr18:4455006:-	PPP4R1	45542	chr18:9595100:-	ONLY_REF_SPLICE	YES	11	111	0.42	0.07	0.0331	0.0552	DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1,PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1	KYSE450_OESOPHAGUS	0.07	0.42	0.0883	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	MAZ--KRT17	4	0	MAZ	5417	chr16:29821843:+	KRT17	10504	chr17:39780814:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0	MAZ->MYC_associated_zinc_finger_protein,chr16:29817427-29823649:+,KRT17->chr17:39775689-39781094:-,keratin_17	KYSE450_OESOPHAGUS	1	1	0.0442	TRUE	0	0	0	2	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	IGF1R--RP11-706C16.7	3	3	IGF1R	1705	chr15:99192904:+	RP11-706C16.7	42327	chr8:143844654:+	INCL_NON_REF_SPLICE	YES	89	0	0.06	1	0.0331	0.0331	IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,RP11-706C16.7->chr8:143844534-143847845:+	KYSE450_OESOPHAGUS	0.06	1	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	STK40--TXLNA	3	0	STK40	10526	chr1:36819965:-	TXLNA	23176	chr1:32650126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	STK40->chr1:36805225-36851497:-,serine/threonine_kinase_40,TXLNA->chr1:32645287-32663886:+,taxilin_alpha	KYSE450_OESOPHAGUS	1	1	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	CDC37L1--JAK2	2	3	CDC37L1	1341	chr9:4679899:+	JAK2	20134	chr9:5044403:+	ONLY_REF_SPLICE	YES	82	7	0.06	0.42	0.0221	0.0331	CDC37L1->cell_division_cycle_37_like_1,chr9:4679559-4708398:+,JAK2->ArcherDX_panel,FoundationOne_panel,Janus_kinase_2,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:4985033-5128183:+	KYSE450_OESOPHAGUS	0.06	0.42	0.0552	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	DLGAP1--PPP4R1	1	6	DLGAP1	1330	chr18:4455006:-	PPP4R1	41568	chr18:9614268:-	ONLY_REF_SPLICE	NO	11	31	0.39	0.18	0.011	0.0662	DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1,PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1	KYSE450_OESOPHAGUS	0.18	0.39	0.0772	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	MYO6--ME1	1	5	MYO6	1232	chr6:76459140:+	ME1	47949	chr6:84061858:-	ONLY_REF_SPLICE	YES	30	124	0.17	0.05	0.011	0.0552	MYO6->chr6:76458909-76629254:+,myosin_VI,ME1->chr6:83920108-84140797:-,malic_enzyme_1	KYSE450_OESOPHAGUS	0.05	0.17	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	RMND5B--CCZ1B	2	0	RMND5B	1381	chr5:177558377:+	CCZ1B	29396	chr7:6845668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	RMND5B->Oncogene{Bushman},chr5:177557997-177577566:+,required_for_meiotic_nuclear_division_5_homolog_B,CCZ1B->CCZ1_homolog_B,_vacuolar_protein_trafficking_and_biogenesis_associated,chr7:6833765-6866401:-	KYSE450_OESOPHAGUS	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	SBF2--RP11-220I1.1	2	0	SBF2	19870	chr11:9983504:-	RP11-220I1.1	67291	chr9:37086665:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,RP11-220I1.1->chr9:37079893-37090398:+	KYSE450_OESOPHAGUS	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	TBC1D23--CMSS1	2	0	TBC1D23	15575	chr3:100025387:+	CMSS1	37565	chr3:99865817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	LOCAL_REARRANGEMENT:+:[82397],TBC1D23->TBC1_domain_family_member_23,chr3:99979844-100044095:+,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	KYSE450_OESOPHAGUS	1	1	0.0221	TRUE	0	1	0	1	1	TRUE	ACH-000865
KYSE450_OESOPHAGUS	TIAM2--SYNJ2	1	4	TIAM2	2974	chr6:155182132:+	SYNJ2	55385	chr6:158449788:+	ONLY_REF_SPLICE	YES	10	10	0.33	0.33	0.011	0.0442	TIAM2->T-cell_lymphoma_invasion_and_metastasis_2,chr6:155153831-155578857:+,SYNJ2->chr6:158402888-158520208:+,synaptojanin_2	KYSE450_OESOPHAGUS	0.33	0.33	0.0552	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	TMEM144--RP11-526A4.1	2	0	TMEM144	18662	chr4:159165501:+	RP11-526A4.1	26211	chr4:150736500:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	TMEM144->chr4:159122756-159176563:+,transmembrane_protein_144,RP11-526A4.1->chr4:150273169-150817385:-	KYSE450_OESOPHAGUS	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	WARS--MDH2	2	0	WARS	1546	chr14:100842597:-	MDH2	25871	chr7:75684148:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	WARS->chr14:100800125-100843142:-,tryptophanyl-tRNA_synthetase,MDH2->chr7:75677369-75696826:+,malate_dehydrogenase_2	KYSE450_OESOPHAGUS	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000865
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYH11	207	93	CBFB	5896	chr16:67116211:+	MYH11	50201	chr16:15814908:-	ONLY_REF_SPLICE	YES	55	3	0.85	0.99	3.0611	1.3753	Mitelman{Heart=2,Skin=2,MDS_NOS=2,RARS=2,AML=22},chimerdb_pubmed{acute myelogenous leukemia(AML),acute myeloid leukaemia (AML),core binding factor [CBF] leukemias,chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),Myelomonoblastic leukaemia,Granulocytic sarcoma,severalleukaemia,minimal residual disease (MRD), acute myeloid leukemia (AML), complete remission (CR),leukemia,Acute myelomonoblastic leukemia,acute myeloid leukemia,Acute myeloid leukemia (AML),acute myelomonocytic leukemia(M4),Granulocytic sarcoma (GS),Acute myeloid leukaemia (AML),myelodysplastic syndromes (MDS),chronic myeloid leukemia, acute lymphoblastic leukemia,childhood acute myeloid leukemia (AML), acute myelogenous leukemia,acute myeloid leukemia (AML),acute myelomonocytic leukemia (M4)},CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.99	4.4364	TRUE	0	9	0	1	9	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYH11	14	93	CBFB	5927	chr16:67116242:+	MYH11	50201	chr16:15814908:-	ONLY_REF_SPLICE	YES	65	3	0.62	0.97	0.207	1.3753	Mitelman{Heart=2,Skin=2,MDS_NOS=2,RARS=2,AML=22},chimerdb_pubmed{acute myelogenous leukemia(AML),acute myeloid leukaemia (AML),core binding factor [CBF] leukemias,chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),Myelomonoblastic leukaemia,Granulocytic sarcoma,severalleukaemia,minimal residual disease (MRD), acute myeloid leukemia (AML), complete remission (CR),leukemia,Acute myelomonoblastic leukemia,acute myeloid leukemia,Acute myeloid leukemia (AML),acute myelomonocytic leukemia(M4),Granulocytic sarcoma (GS),Acute myeloid leukaemia (AML),myelodysplastic syndromes (MDS),chronic myeloid leukemia, acute lymphoblastic leukemia,childhood acute myeloid leukemia (AML), acute myelogenous leukemia,acute myeloid leukemia (AML),acute myelomonocytic leukemia (M4)},CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.97	1.5823	TRUE	0	9	0	1	9	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYH11	1	93	CBFB	7159	chr16:67127532:+	MYH11	50201	chr16:15814908:-	ONLY_REF_SPLICE	YES	70	3	0.57	0.97	0.0148	1.3753	Mitelman{Heart=2,Skin=2,MDS_NOS=2,RARS=2,AML=22},chimerdb_pubmed{acute myelogenous leukemia(AML),acute myeloid leukaemia (AML),core binding factor [CBF] leukemias,chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),Myelomonoblastic leukaemia,Granulocytic sarcoma,severalleukaemia,minimal residual disease (MRD), acute myeloid leukemia (AML), complete remission (CR),leukemia,Acute myelomonoblastic leukemia,acute myeloid leukemia,Acute myeloid leukemia (AML),acute myelomonocytic leukemia(M4),Granulocytic sarcoma (GS),Acute myeloid leukaemia (AML),myelodysplastic syndromes (MDS),chronic myeloid leukemia, acute lymphoblastic leukemia,childhood acute myeloid leukemia (AML), acute myelogenous leukemia,acute myeloid leukemia (AML),acute myelomonocytic leukemia (M4)},CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	0.97	1.3901	TRUE	0	0	0	1	0	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PABPC1--RPS28	3	0	PABPC1	2022	chr8:101734016:-	RPS28	18700	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0444	TRUE	0	0	0	6	0	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C7orf50--UBE2E1	2	0	C7orf50	1072	chr7:1177825:-	UBE2E1	21912	chr3:23852951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD6--GNAS	2	0	CHD6	1155	chr20:40246979:-	GNAS	67953	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	0	1	0	2	0	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LZTS2--AZU1	2	0	LZTS2	3251	chr10:102758738:+	AZU1	16321	chr19:828230:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	LZTS2->chr10:102756375-102767593:+,leucine_zipper,_putative_tumor_suppressor_2,AZU1->azurocidin_1,chr19:825097-832017:+	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2B--SET	2	0	PRRC2B	1171	chr9:134269650:+	SET	46129	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--MXI1	2	0	ZEB2	5479	chr2:145274845:-	MXI1	42404	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000439
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP13A1--ZNF14	6	8	ATP13A1	16593	chr19:19756456:-	ZNF14	21185	chr19:19825296:-	ONLY_REF_SPLICE	YES	143	9	0.09	0.61	0.0688	0.0918	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:-:[46778],ATP13A1->ATPase_13A1,chr19:19756007-19774502:-,ZNF14->chr19:19821280-19843906:-,zinc_finger_protein_14	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.61	0.1606	TRUE	0	0	0	1	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-32B5.7--NBEAP1	6	1	RP11-32B5.7	3692	chr15:21941616:-	NBEAP1	9471	chr15:20876597:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0.0115	RP11-32B5.7->chr15:21941147-21968151:-,NBEAP1->Oncogene{Bushman},chr15:20862967-20893737:-,neurobeachin_pseudogene_1	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0803	TRUE	1	1	0	1	1	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLASRP--CLPTM1	5	0	CLASRP	2272	chr19:45543569:+	CLPTM1	25674	chr19:45480600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0574	0	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[45699],CLASRP->CLK4_associating_serine/arginine_rich_protein,chr19:45542298-45574214:+,CLPTM1->chr19:45457842-45496599:+,cleft_lip_and_palate_associated_transmembrane_protein_1	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--NSMCE2	2	0	C17orf76-AS1	1593	chr17:16342728:+	NSMCE2	24230	chr8:126369461:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	C17orf76-AS1->chr17:16342136-16381992:+,NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HECTD4--AARS	2	0	HECTD4	49664	chr12:112647819:-	AARS	97024	chr16:70289739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,AARS->alanyl-tRNA_synthetase,chr16:70286198-70323446:-	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--DOT1L	2	0	OAZ1	1259	chr19:2269743:+	DOT1L	34537	chr19:2225387:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[36908],OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PANK4--SKI	2	0	PANK4	1137	chr1:2457903:-	SKI	22492	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PANK4->chr1:2439972-2458039:-,pantothenate_kinase_4,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	1	1	0	4	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNPS1--EEF2K	2	0	RNPS1	1358	chr16:2318056:-	EEF2K	32278	chr16:22291519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RNPS1->RNA_binding_protein_with_serine_rich_domain_1,chr16:2303117-2318413:-,EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	0	1	0	17	0	TRUE	ACH-000065
TTC709_SOFT_TISSUE	IP6K1--UBA7	58	102	IP6K1	1189	chr3:49823787:-	UBA7	14675	chr3:49851375:-	INCL_NON_REF_SPLICE	YES	100	0	0.62	1	0.685	1.2046	LOCAL_REARRANGEMENT:-:[18665],IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,UBA7->Oncogene{Bushman},chr3:49842640-49851379:-,ubiquitin_like_modifier_activating_enzyme_7	TTC709_SOFT_TISSUE	0.62	1	1.8896	TRUE	0	0	0	2	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	WIPF1--CHN1	3	0	WIPF1	1143	chr2:175547502:-	CHN1	41509	chr2:175689246:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	WIPF1->WAS/WASL_interacting_protein_family_member_1,chr2:175424300-175547644:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	TTC709_SOFT_TISSUE	1	1	0.0354	TRUE	0	0	0	2	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	PHF17--C4orf33	2	1	PHF17	5826	chr4:129752965:+	C4orf33	30099	chr4:130023757:+	ONLY_REF_SPLICE	YES	72	2	0.04	0.6	0.0236	0.0118	PHF17->chr4:129730779-129796379:+,C4orf33->chr4:130014472-130037795:+,chromosome_4_open_reading_frame_33	TTC709_SOFT_TISSUE	0.04	0.6	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	ARMC9--PSMD1	2	0	ARMC9	9496	chr2:232100094:+	PSMD1	57973	chr2:232010954:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	{Klijn_CCL:Skin=3,Other=1,Brain=1},LOCAL_REARRANGEMENT:+:[25719],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	DENND5A--EWSR1	2	0	DENND5A	24013	chr11:9166542:-	EWSR1	51798	chr22:29694723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DENND5A->DENN_domain_containing_5A,chr11:9160372-9286937:-,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	FUS--LUC7L2	2	0	FUS	4900	chr16:31196500:+	LUC7L2	25752	chr7:139106909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	IRS1--RP11-395N3.2	2	0	IRS1	5771	chr2:227659705:-	RP11-395N3.2	17031	chr2:227672202:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	LOCAL_INVERSION:-:+:[387],IRS1->chr2:227596033-227664475:-,insulin_receptor_substrate_1,RP11-395N3.2->chr2:227664862-227675745:+	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	NEAT1--ABR	2	0	NEAT1	1610	chr11:65190854:+	ABR	39354	chr17:1003975:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	UVRAG--MYO6	2	0	UVRAG	16943	chr11:75715133:+	MYO6	63311	chr6:76617322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,MYO6->chr6:76458909-76629254:+,myosin_VI	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000597
LNCAPCLONEFGC_PROSTATE	MRPS10--HP	98	20	MRPS10	6183	chr6:42176038:-	HP	16203	chr16:72094011:+	INCL_NON_REF_SPLICE	YES	47	0	0.72	1	1.3437	0.2742	MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10,HP->chr16:72088491-72094954:+,haptoglobin	LNCAPCLONEFGC_PROSTATE	0.72	1	1.6179	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	RERE--PIK3CD	78	25	RERE	24297	chr1:8482787:-	PIK3CD	44842	chr1:9770482:+	ONLY_REF_SPLICE	YES	22	12	0.82	0.9	1.0695	0.3428	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,PIK3CD->Oncogene{Bushman},chr1:9711790-9789172:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_delta	LNCAPCLONEFGC_PROSTATE	0.82	0.9	1.4123	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	CCSER2--CYP2C19	61	47	CCSER2	1223	chr10:86088564:+	CYP2C19	41112	chr10:96602594:+	ONLY_REF_SPLICE	YES	5	0	0.96	1	0.8364	0.6444	CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,CYP2C19->chr10:96447911-96613017:+,cytochrome_P450_family_2_subfamily_C_member_19	LNCAPCLONEFGC_PROSTATE	0.96	1	1.4808	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	GPS2--MPP2	56	37	GPS2	1606	chr17:7218278:-	MPP2	15757	chr17:41975748:-	ONLY_REF_SPLICE	YES	52	12	0.64	0.89	0.7678	0.5073	{Klijn_CCL:Other=1},GPS2->G_protein_pathway_suppressor_2,chr17:7214643-7218883:-,MPP2->chr17:41952725-41987068:-,membrane_palmitoylated_protein_2	LNCAPCLONEFGC_PROSTATE	0.64	0.89	1.2751	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	FAM117B--BMPR2	38	9	FAM117B	1611	chr2:203500511:+	BMPR2	18612	chr2:203329532:+	ONLY_REF_SPLICE	YES	7	10	0.87	0.82	0.521	0.1234	LOCAL_REARRANGEMENT:+:[67427],FAM117B->chr2:203499901-203634480:+,family_with_sequence_similarity_117_member_B,BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+	LNCAPCLONEFGC_PROSTATE	0.82	0.87	0.6444	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	SNX9--CYP2C19	35	17	SNX9	4471	chr6:158296208:+	CYP2C19	37228	chr10:96580253:+	ONLY_REF_SPLICE	YES	35	0	0.6	1	0.4799	0.2331	{Klijn_CCL:Other=1},SNX9->chr6:158244296-158366109:+,sorting_nexin_9,CYP2C19->chr10:96447911-96613017:+,cytochrome_P450_family_2_subfamily_C_member_19	LNCAPCLONEFGC_PROSTATE	0.6	1	0.713	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MIPOL1--DGKB	30	20	MIPOL1	25318	chr14:37969343:+	DGKB	77921	chr7:14188863:-	ONLY_REF_SPLICE	YES	27	0	0.65	1	0.4113	0.2742	chimerdb_pubmed{LNCaP},MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1,DGKB->chr7:14184674-15014402:-,diacylglycerol_kinase_beta	LNCAPCLONEFGC_PROSTATE	0.65	1	0.6855	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	DLEU2--PSPC1	17	9	DLEU2	5811	chr13:50642233:-	PSPC1	14940	chr13:20356931:-	ONLY_REF_SPLICE	YES	9	52	0.74	0.33	0.2331	0.1234	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	LNCAPCLONEFGC_PROSTATE	0.33	0.74	0.3565	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	ITPKC--PPFIA3	14	4	ITPKC	1721	chr19:41223728:+	PPFIA3	19956	chr19:49637051:+	INCL_NON_REF_SPLICE	YES	6	9	0.75	0.67	0.192	0.0548	ITPKC->chr19:41223008-41246765:+,inositol-trisphosphate_3-kinase_C,PPFIA3->PTPRF_interacting_protein_alpha_3,chr19:49622646-49654283:+	LNCAPCLONEFGC_PROSTATE	0.67	0.75	0.2468	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	CCSER2--CYP2C19	3	47	CCSER2	1223	chr10:86088564:+	CYP2C19	31659	chr10:96484103:+	ONLY_REF_SPLICE	NO	5	0	0.91	1	0.0411	0.6444	CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,CYP2C19->chr10:96447911-96613017:+,cytochrome_P450_family_2_subfamily_C_member_19	LNCAPCLONEFGC_PROSTATE	0.91	1	0.6855	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	GPR158--RP11-80K21.3	11	3	GPR158	3367	chr10:25510086:+	RP11-80K21.3	25310	chr10:25406221:+	ONLY_REF_SPLICE	YES	68	0	0.17	1	0.1508	0.0411	LOCAL_REARRANGEMENT:+:[13826],GPR158->G_protein-coupled_receptor_158,chr10:25463991-25891155:+,RP11-80K21.3->chr10:25401987-25450165:+	LNCAPCLONEFGC_PROSTATE	0.17	1	0.1919	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MSH2--MSH6	7	6	MSH2	9609	chr2:47672796:+	MSH6	31885	chr2:47984828:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.096	0.0823	PROTCLUST,MSH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47630108-47789450:+,mutS_homolog_2,MSH6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47922669-48037240:+,mutS_homolog_6	LNCAPCLONEFGC_PROSTATE	0.93	1	0.1783	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	DLEU2--PSPC1	7	2	DLEU2	5811	chr13:50642233:-	PSPC1	16346	chr13:20346683:-	ONLY_REF_SPLICE	YES	9	51	0.5	0.15	0.096	0.0274	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	LNCAPCLONEFGC_PROSTATE	0.15	0.5	0.1234	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	DLEU2--PSPC1	3	9	DLEU2	5811	chr13:50642233:-	PSPC1	14889	chr13:20356982:-	INCL_NON_REF_SPLICE	YES	9	2	0.57	0.86	0.0411	0.1234	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	LNCAPCLONEFGC_PROSTATE	0.57	0.86	0.1645	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	CCDC43--YBX2	4	1	CCDC43	3529	chr17:42759296:-	YBX2	15936	chr17:7193854:-	INCL_NON_REF_SPLICE	YES	55	3	0.08	0.62	0.0548	0.0137	CCDC43->chr17:42750437-42767147:-,coiled-coil_domain_containing_43,YBX2->Y-box_binding_protein_2,chr17:7191571-7197934:-	LNCAPCLONEFGC_PROSTATE	0.08	0.62	0.0685	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	TTC6--MIPOL1	3	2	TTC6	2242	chr14:38075947:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	132	43	0.04	0.1	0.0411	0.0274	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	LNCAPCLONEFGC_PROSTATE	0.04	0.1	0.0685	TRUE	0	13	0	3	11	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	KLK3--EEF2	3	0	KLK3	4248	chr19:51361418:+	EEF2	17682	chr19:3977480:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.27%,KLK3->chr19:51358171-51364020:+,kallikrein_related_peptidase_3,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	LNCAPCLONEFGC_PROSTATE	1	1	0.0411	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	TTC6--MIPOL1	3	0	TTC6	1162	chr14:38065213:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0411	0	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	LNCAPCLONEFGC_PROSTATE	1	1	0.0411	TRUE	0	9	0	5	8	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	FAM117B--BMPR2	2	1	FAM117B	1611	chr2:203500511:+	BMPR2	19783	chr2:203332242:+	ONLY_REF_SPLICE	YES	7	28	0.3	0.1	0.0274	0.0137	LOCAL_REARRANGEMENT:+:[67427],FAM117B->chr2:203499901-203634480:+,family_with_sequence_similarity_117_member_B,BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+	LNCAPCLONEFGC_PROSTATE	0.1	0.3	0.0411	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	TTC6--MIPOL1	2	1	TTC6	5307	chr14:38092208:+	MIPOL1	90133	chr14:38016110:+	ONLY_REF_SPLICE	YES	92	27	0.03	0.1	0.0274	0.0137	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	LNCAPCLONEFGC_PROSTATE	0.03	0.1	0.0411	TRUE	0	4	0	2	3	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	CCSER2--TBC1D12	2	0	CCSER2	13658	chr10:86230214:+	TBC1D12	29139	chr10:96201653:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,TBC1D12->TBC1_domain_family_member_12,chr10:96162261-96295687:+	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	FRYL--OCIAD2	2	0	FRYL	4609	chr4:48686690:-	OCIAD2	84248	chr4:48906628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	YOSHIHARA_TCGA_num_samples[LUAD:1|PRAD:1],{Klijn_CCL:Kidney=1},FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,OCIAD2->OCIA_domain_containing_2,chr4:48887036-48908954:-	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	0	1	0	1	1	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	GPS2--MPP2	2	0	GPS2	1234	chr17:7218650:-	MPP2	15757	chr17:41975748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	{Klijn_CCL:Other=1},GPS2->G_protein_pathway_suppressor_2,chr17:7214643-7218883:-,MPP2->chr17:41952725-41987068:-,membrane_palmitoylated_protein_2	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	GTF3C5--RNF10	2	0	GTF3C5	1476	chr9:135906551:+	RNF10	34221	chr12:121013434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	GTF3C5->chr9:135906076-135933890:+,general_transcription_factor_IIIC_subunit_5,RNF10->chr12:120971283-121015397:+,ring_finger_protein_10	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	NCAM2--PPM1K	2	0	NCAM2	23923	chr21:22849792:+	PPM1K	46412	chr4:89186287:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	NCAM2->chr21:22370633-22915650:+,neural_cell_adhesion_molecule_2,PPM1K->chr4:89178772-89205921:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1K	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	RP11-356O9.1--MIPOL1	2	0	RP11-356O9.1	1316	chr14:38033567:+	MIPOL1	15743	chr14:37737863:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_REARRANGEMENT:+:[11686],RP11-356O9.1->chr14:38033252-38048330:+,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MSH2--MSH6	1	2	MSH2	9609	chr2:47672796:+	MSH6	35885	chr2:48018066:+	ONLY_REF_SPLICE	NO	1	28	0.75	0.1	0.0137	0.0274	PROTCLUST,MSH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47630108-47789450:+,mutS_homolog_2,MSH6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47922669-48037240:+,mutS_homolog_6	LNCAPCLONEFGC_PROSTATE	0.1	0.75	0.0411	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	PIK3CD--TNFRSF8	1	1	PIK3CD	3314	chr1:9751629:+	TNFRSF8	26329	chr1:12169623:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0137	0.0137	PIK3CD->Oncogene{Bushman},chr1:9711790-9789172:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_delta,TNFRSF8->Oncogene{Bushman},chr1:12123434-12204264:+,tumor_necrosis_factor_receptor_superfamily_member_8	LNCAPCLONEFGC_PROSTATE	0.67	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000977
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAP7D3--TRIO	11	11	MAP7D3	7903	chrX:135318403:-	TRIO	30140	chr5:14270934:+	ONLY_REF_SPLICE	YES	24	1	0.48	0.96	0.0975	0.0975	MAP7D3->MAP7_domain_containing_3,chrX:135295381-135338641:-,TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.96	0.195	TRUE	0	0	0	1	0	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	5	20	AP003900.6	3299	chr21:11174002:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	15	0	0.62	1	0.0443	0.1773	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.2216	TRUE	0	0	0	3	0	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TAF12	4	0	RCC1	2175	chr1:28834672:+	TAF12	21394	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	LOCAL_INVERSION:+:-:[50023],RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0355	TRUE	0	1	0	2	0	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC011752.1--AC067959.1	3	0	AC011752.1	3400	chr2:21619046:+	AC067959.1	12999	chr2:21750379:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8]},AC011752.1->chr2:21540532-21784185:+,AC067959.1->chr2:21444047-22193831:+	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0266	TRUE	1	5	0	1	2	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNPY2--UBE2D2	2	0	CNPY2	2486	chr12:56708635:-	UBE2D2	13316	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	GTEx&tcga_normals:1/3694=0.03%,CNPY2->canopy_FGF_signaling_regulator_2,chr12:56703626-56710120:-,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0177	TRUE	0	4	0	1	0	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSN1--SOGA1	2	0	DSN1	3026	chr20:35399276:-	SOGA1	33047	chr20:35423002:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	LOCAL_REARRANGEMENT:-:[3624],DSN1->DSN1_homolog,_MIS12_kinetochore_complex_component,chr20:35380194-35402221:-,SOGA1->chr20:35405845-35492089:-,suppressor_of_glucose,_autophagy_associated_1	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0177	TRUE	0	0	0	2	0	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TAF12	2	0	RCC1	2175	chr1:28834672:+	TAF12	20309	chr1:28950542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	LOCAL_INVERSION:+:-:[50023],RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNIP--GOLGA3	2	0	TXNIP	1584	chr1:145439052:+	GOLGA3	10421	chr12:133398897:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,GOLGA3->chr12:133345495-133405444:-,golgin_A3	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000426
TE14_OESOPHAGUS	HIATL2--GLI4	4	0	HIATL2	8701	chr9:99696077:-	GLI4	15002	chr8:144351530:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0723	0	HIATL2->chr9:99660348-99775862:-,GLI4->GLI_family_zinc_finger_4,Oncogene{Bushman},chr8:144349603-144359101:+	TE14_OESOPHAGUS	1	1	0.0723	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	DCTD--MTCH2	3	0	DCTD	4014	chr4:183836076:-	MTCH2	20986	chr11:47648679:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0542	0	DCTD->chr4:183811213-183839089:-,dCMP_deaminase,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	TE14_OESOPHAGUS	1	1	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	MCL1--DAB2IP	3	0	MCL1	3503	chr1:150549564:-	DAB2IP	34817	chr9:124546434:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	MCL1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:150547032-150552066:-,myeloid_cell_leukemia_1,DAB2IP->DAB2_interacting_protein,Oncogene{Bushman},chr9:124329336-124547809:+	TE14_OESOPHAGUS	1	1	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	PELI2--WASL	3	0	PELI2	3527	chr14:56645182:+	WASL	17394	chr7:123349277:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0542	0	PELI2->chr14:56584532-56768244:+,pellino_E3_ubiquitin_protein_ligase_family_member_2,WASL->Wiskott-Aldrich_syndrome_like,chr7:123321989-123389121:-	TE14_OESOPHAGUS	1	1	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	SLC25A21--CTAGE5	3	0	SLC25A21	1586	chr14:37641486:-	CTAGE5	43003	chr14:39815108:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0542	0	SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21,CTAGE5->CTAGE_family_member_5,chr14:39734488-39856156:+	TE14_OESOPHAGUS	1	1	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	XRRA1--ATF1	3	0	XRRA1	1273	chr11:74659973:-	ATF1	34059	chr12:51173923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0542	0	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,ATF1->Oncogene{Bushman},activating_transcription_factor_1,chr12:51157493-51214905:+	TE14_OESOPHAGUS	1	1	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	ANO1--RP11-738G5.1	2	1	ANO1	7143	chr11:69951894:+	RP11-738G5.1	38062	chr8:50409534:-	ONLY_REF_SPLICE	NO	44	0	0.06	1	0.0362	0.0181	ANO1->anoctamin_1,chr11:69924408-70035634:+,RP11-738G5.1->chr8:50409322-50424739:-	TE14_OESOPHAGUS	0.06	1	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	CERS6--STK39	2	1	CERS6	3994	chr2:169417832:+	STK39	29750	chr2:168986268:-	ONLY_REF_SPLICE	YES	5	4	0.38	0.43	0.0362	0.0181	GTEx_v2:{count=5;pct=0.06%;dist=Vagina=1,Cervix_-_Ectocervix=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,Colon_-_Transverse=1},CERS6->ceramide_synthase_6,chr2:169312372-169631644:+,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	TE14_OESOPHAGUS	0.38	0.43	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	AZIN1--HPS5	2	0	AZIN1	7535	chr8:103870241:-	HPS5	28436	chr11:18332998:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-,HPS5->HPS5,_biogenesis_of_lysosomal_organelles_complex_2_subunit_2,chr11:18300223-18343745:-	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	C17orf76-AS1--ATP6V1G2-DDX39B	2	0	C17orf76-AS1	1593	chr17:16342728:+	ATP6V1G2-DDX39B	21297	chr6:31503262:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	C17orf76-AS1->chr17:16342136-16381992:+,ATP6V1G2-DDX39B->ATP6V1G2-DDX39B_readthrough_(NMD_candidate),chr6:31497996-31514385:-	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	1	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	C17orf76-AS1--MIR205HG	2	0	C17orf76-AS1	1593	chr17:16342728:+	MIR205HG	13564	chr1:209602526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	C17orf76-AS1->chr17:16342136-16381992:+,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	CNOT1--PTTG1	2	0	CNOT1	1159	chr16:58663632:-	PTTG1	52068	chr5:159849309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	DCUN1D1--RBM39	2	0	DCUN1D1	4385	chr3:182683467:-	RBM39	19522	chr20:34330035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	DCUN1D1->chr3:182655862-182703741:-,defective_in_cullin_neddylation_1_domain_containing_1,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	DNAJC17--DUOX1	2	0	DNAJC17	3454	chr15:41071421:-	DUOX1	33073	chr15:45445578:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	DNAJC17->DnaJ_heat_shock_protein_family_(Hsp40)_member_C17,chr15:41060067-41099675:-,DUOX1->chr15:45422131-45457774:+,dual_oxidase_1	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	DTL--POLR3F	2	0	DTL	1366	chr1:212209284:+	POLR3F	30612	chr20:18464125:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,POLR3F->chr20:18447771-18465287:+,polymerase_(RNA)_III_subunit_F	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	DUSP16--LOH12CR1	2	0	DUSP16	1267	chr12:12715051:-	LOH12CR1	19589	chr12:12588562:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[8989],DUSP16->chr12:12628829-12715317:-,dual_specificity_phosphatase_16,LOH12CR1->chr12:12510013-12619840:+	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	1	0	1	1	TRUE	ACH-000726
TE14_OESOPHAGUS	GOT2--FDFT1	2	0	GOT2	1218	chr16:58768044:-	FDFT1	26174	chr8:11695897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	GOT2->chr16:58741035-58768261:-,glutamic-oxaloacetic_transaminase_2,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	HINFP--BRD8	2	0	HINFP	10513	chr11:119003929:+	BRD8	29865	chr5:137497835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	HINFP->chr11:118992297-119006752:+,histone_H4_transcription_factor,BRD8->bromodomain_containing_8,chr5:137475455-137514675:-	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	MINK1--SREBF1	2	0	MINK1	3435	chr17:4781677:+	SREBF1	24282	chr17:17723835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1,SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	MIR4435-1HG--NMNAT3	2	0	MIR4435-1HG	14499	chr2:112101638:-	NMNAT3	41973	chr3:139292522:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	MIR4435-1HG->chr2:111953927-112252677:-,NMNAT3->chr3:139279022-139396859:-,nicotinamide_nucleotide_adenylyltransferase_3	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	MYO5C--TRPM7	2	0	MYO5C	9357	chr15:52561950:-	TRPM7	91146	chr15:50854005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	MYO5C->chr15:52484519-52587995:-,myosin_VC,TRPM7->chr15:50844670-50979012:-,transient_receptor_potential_cation_channel_subfamily_M_member_7	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	NBN--EIF3H	2	0	NBN	2566	chr8:90996753:-	EIF3H	31148	chr8:117738411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	NBN->Oncogene{Bushman},chr8:90945564-91015456:-,nibrin,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	NUCKS1--MIR205HG	2	0	NUCKS1	2370	chr1:205698700:-	MIR205HG	16682	chr1:209602526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	PTRH2--CANX	2	0	PTRH2	1256	chr17:57784732:-	CANX	17767	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2,CANX->calnexin,chr5:179105629-179157926:+	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	RBM23--ODF2L	2	0	RBM23	6943	chr14:23378692:-	ODF2L	35709	chr1:86820542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	RBM23->RNA_binding_motif_protein_23,chr14:23369854-23388393:-,ODF2L->chr1:86814344-86862023:-,outer_dense_fiber_of_sperm_tails_2_like	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	RCC1--SP1	2	0	RCC1	2175	chr1:28834672:+	SP1	20361	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	RP11-78F17.1--DSCR3	2	0	RP11-78F17.1	1307	chr18:976896:+	DSCR3	16383	chr21:38612940:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	RP11-78F17.1->chr18:976590-1174824:+,DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	SKP1--CNIH4	2	0	SKP1	1184	chr5:133512546:-	CNIH4	26549	chr1:224553581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-,CNIH4->chr1:224544552-224567161:+,cornichon_family_AMPA_receptor_auxiliary_protein_4	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	SNX9--SERAC1	2	0	SNX9	4471	chr6:158296208:+	SERAC1	29658	chr6:158579396:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	SNX9->chr6:158244296-158366109:+,sorting_nexin_9,SERAC1->chr6:158530536-158589312:-,serine_active_site_containing_1	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	SUCLA2--KCTD18	2	0	SUCLA2	1384	chr13:48611742:-	KCTD18	24152	chr2:201371814:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	SUCLA2->chr13:48510622-48612125:-,succinate-CoA_ligase_ADP-forming_beta_subunit,KCTD18->chr2:201353675-201384507:-,potassium_channel_tetramerization_domain_containing_18	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	TDRP--SOCS6	2	0	TDRP	2132	chr8:494650:-	SOCS6	13918	chr18:67991779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	TDRP->chr8:439803-495781:-,testis_development_related_protein,SOCS6->chr18:67956137-67997436:+,suppressor_of_cytokine_signaling_6	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	VPS51--MPHOSPH8	2	0	VPS51	4226	chr11:64864599:+	MPHOSPH8	28204	chr13:20245346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	VPS51->VPS51,_GARP_complex_subunit,chr11:64856796-64879332:+,MPHOSPH8->M-phase_phosphoprotein_8,chr13:20207788-20247599:+	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	ZNF141--SEPT7P2	2	0	ZNF141	1173	chr4:331775:+	SEPT7P2	27791	chr7:45767912:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	ZNF141->chr4:331603-378653:+,zinc_finger_protein_141,SEPT7P2->chr7:45763379-45808617:-,septin_7_pseudogene_2	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	ZNF490--EML2	2	0	ZNF490	5656	chr19:12721378:-	EML2	28616	chr19:46133304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	ZNF490->chr19:12688775-12750912:-,zinc_finger_protein_490,EML2->chr19:46110252-46148887:-,echinoderm_microtubule_associated_protein_like_2	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	164	56	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	88	19	0.71	0.92	1.5647	0.5343	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.92	2.099	TRUE	0	2	1	16	2	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	67	11	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	7	86	0.92	0.48	0.6392	0.1049	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.92	0.7441	TRUE	0	2	0	9	2	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	4	2	ABL1	1510	chr9:133589842:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	7	95	0.46	0.06	0.0382	0.0191	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.46	0.0573	TRUE	0	0	0	6	0	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	1	CCDC26	6922	chr8:130365050:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	44	5	0.1	0.5	0.0382	0.0095	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.5	0.0477	TRUE	0	0	0	6	0	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	0	CCDC26	4666	chr8:130411760:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0286	TRUE	0	0	0	4	0	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	0	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0286	TRUE	0	2	0	11	2	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-57H20.1--NR3C1	2	0	CTB-57H20.1	1104	chr5:142985296:+	NR3C1	17137	chr5:142780417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	CTB-57H20.1->chr5:142985193-143208337:+,NR3C1->chr5:142657496-142815077:-,nuclear_receptor_subfamily_3_group_C_member_1	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VRK1--FAF1	2	0	VRK1	11520	chr14:97327072:+	FAF1	21405	chr1:51323669:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	1	CCDC26	4666	chr8:130411760:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.0095	0.0095	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.019	TRUE	0	0	0	4	0	TRUE	ACH-000462
HCC4006_LUNG	CD44--CAT	1450	695	CD44	1501	chr11:35160917:+	CAT	41736	chr11:34489835:+	ONLY_REF_SPLICE	YES	6282	836	0.25	0.72	16.1367	7.7345	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,CAT->catalase,chr11:34460472-34493609:+	HCC4006_LUNG	0.25	0.72	23.8712	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	C6orf132--RPL31P33	170	52	C6orf132	2427	chr6:42096410:-	RPL31P33	15438	chr6:53233469:+	INCL_NON_REF_SPLICE	YES	35	0	0.86	1	1.8919	0.5787	C6orf132->chr6:42068856-42110357:-,chromosome_6_open_reading_frame_132,RPL31P33->chr6:53233468-53233807:+,ribosomal_protein_L31_pseudogene_33	HCC4006_LUNG	0.86	1	2.4706	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	ZNF230--PRPF31	131	54	ZNF230	1160	chr19:44507259:+	PRPF31	13564	chr19:54619064:+	INCL_NON_REF_SPLICE	YES	2	1	0.99	0.99	1.4579	0.601	ZNF230->chr19:44507100-44518078:+,zinc_finger_protein_230,PRPF31->chr19:54618837-54635140:+,pre-mRNA_processing_factor_31	HCC4006_LUNG	0.99	0.99	2.0589	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	80	45	MCU	1171	chr10:74452059:+	RP11-464F9.21	25029	chr10:75434331:+	ONLY_REF_SPLICE	YES	216	16	0.37	0.89	0.8903	0.5008	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.37	0.89	1.3911	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	74	55	MCU	5898	chr10:74475660:+	RP11-464F9.21	25029	chr10:75434331:+	ONLY_REF_SPLICE	YES	241	16	0.35	0.89	0.8235	0.6121	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.35	0.89	1.4356	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	CD44--CAT	1	291	CD44	1501	chr11:35160917:+	CAT	43224	chr11:34492505:+	ONLY_REF_SPLICE	YES	6282	965	0.04	0.23	0.0111	3.2385	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,CAT->catalase,chr11:34460472-34493609:+	HCC4006_LUNG	0.04	0.23	3.2496	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	16	73	MCU	5898	chr10:74475660:+	RP11-464F9.21	23393	chr10:75427484:+	ONLY_REF_SPLICE	YES	241	0	0.27	1	0.1781	0.8124	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.27	1	0.9905	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	SLIT3--CTD-2162K18.5	29	12	SLIT3	10881	chr5:168244305:-	CTD-2162K18.5	55017	chr19:37292105:+	ONLY_REF_SPLICE	YES	39	13	0.51	0.76	0.3227	0.1335	SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3,CTD-2162K18.5->chr19:37288420-37319017:+	HCC4006_LUNG	0.51	0.76	0.4562	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	14	58	MCU	1171	chr10:74452059:+	RP11-464F9.21	23393	chr10:75427484:+	ONLY_REF_SPLICE	YES	216	0	0.25	1	0.1558	0.6455	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.25	1	0.8013	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	KDM4B--FST	22	2	KDM4B	17776	chr19:5119863:+	FST	37400	chr5:52778710:+	ONLY_REF_SPLICE	YES	12	2	0.67	0.92	0.2448	0.0223	{Klijn_CCL:Lung=1},KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,FST->Oncogene{Bushman},chr5:52776239-52782964:+,follistatin	HCC4006_LUNG	0.67	0.92	0.2671	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	EPB41L4A--ZNF790	22	0	EPB41L4A	1376	chr5:111754638:-	ZNF790	43167	chr19:37316594:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2448	0	EPB41L4A->chr5:111478138-111755013:-,erythrocyte_membrane_protein_band_4.1_like_4A,ZNF790->chr19:37308330-37341689:-,zinc_finger_protein_790	HCC4006_LUNG	1	1	0.2448	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	ARAF--FOXR2	18	6	ARAF	2556	chrX:47422728:+	FOXR2	14390	chrX:55650839:+	INCL_NON_REF_SPLICE	YES	116	47	0.17	0.34	0.2003	0.0668	ARAF->A-Raf_proto-oncogene,_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:47420516-47431307:+,FOXR2->chrX:55649833-55652621:+,forkhead_box_R2	HCC4006_LUNG	0.17	0.34	0.2671	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	5	55	MCU	6985	chr10:74496329:+	RP11-464F9.21	25029	chr10:75434331:+	ONLY_REF_SPLICE	YES	244	16	0.2	0.79	0.0556	0.6121	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.2	0.79	0.6677	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	1	60	MCU	5898	chr10:74475660:+	RP11-464F9.21	23942	chr10:75428033:+	ONLY_REF_SPLICE	YES	241	12	0.2	0.84	0.0111	0.6677	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.2	0.84	0.6788	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	EPN1--CTD-2117L12.1	13	4	EPN1	8866	chr19:56201316:+	CTD-2117L12.1	18736	chr5:57843198:-	ONLY_REF_SPLICE	YES	229	0	0.07	1	0.1447	0.0445	EPN1->chr19:56186592-56221224:+,epsin_1,CTD-2117L12.1->chr5:57837394-57854070:-	HCC4006_LUNG	0.07	1	0.1892	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	2	48	MCU	1171	chr10:74452059:+	RP11-464F9.21	23942	chr10:75428033:+	ONLY_REF_SPLICE	YES	216	12	0.19	0.81	0.0223	0.5342	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.19	0.81	0.5565	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	2	45	MCU	3010	chr10:74468114:+	RP11-464F9.21	25029	chr10:75434331:+	ONLY_REF_SPLICE	YES	260	16	0.15	0.75	0.0223	0.5008	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.15	0.75	0.5231	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MDGA2--EGLN3-AS1	9	4	MDGA2	1438	chr14:48143720:-	EGLN3-AS1	35576	chr14:34510411:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1002	0.0445	MDGA2->MAM_domain_containing_glycosylphosphatidylinositol_anchor_2,chr14:47308826-48144157:-,chr14:47311134-48143999:-,EGLN3-AS1->EGLN3_antisense_RNA_1,chr14:34509303-34528506:+	HCC4006_LUNG	0.93	1	0.1447	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	CEP120--DCP2	4	4	CEP120	21710	chr5:122700190:-	DCP2	32886	chr5:112321532:+	ONLY_REF_SPLICE	YES	18	42	0.31	0.16	0.0445	0.0445	CEP120->centrosomal_protein_120,chr5:122680579-122759286:-,DCP2->chr5:112312399-112356667:+,decapping_mRNA_2	HCC4006_LUNG	0.16	0.31	0.089	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	OSMR--OR51E2	4	1	OSMR	1269	chr5:38846228:+	OR51E2	29653	chr11:4703991:-	ONLY_REF_SPLICE	YES	32	0	0.14	1	0.0445	0.0111	OSMR->chr5:38845960-38945698:+,oncostatin_M_receptor,OR51E2->chr11:4701401-4719084:-,olfactory_receptor_family_51_subfamily_E_member_2	HCC4006_LUNG	0.14	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	SLIT3--CTD-2162K18.5	2	3	SLIT3	10881	chr5:168244305:-	CTD-2162K18.5	59655	chr19:37318552:+	ONLY_REF_SPLICE	YES	39	11	0.11	0.31	0.0223	0.0334	SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3,CTD-2162K18.5->chr19:37288420-37319017:+	HCC4006_LUNG	0.11	0.31	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	SLIT3--CTD-2162K18.5	2	3	SLIT3	10881	chr5:168244305:-	CTD-2162K18.5	58564	chr19:37314633:+	ONLY_REF_SPLICE	YES	39	11	0.11	0.31	0.0223	0.0334	SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3,CTD-2162K18.5->chr19:37288420-37319017:+	HCC4006_LUNG	0.11	0.31	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	CTC-550B14.7--PSG1	2	1	CTC-550B14.7	1272	chr19:55517832:+	PSG1	11796	chr19:43382430:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0223	0.0111	CTC-550B14.7->chr19:55517561-55559454:+,PSG1->chr19:43370616-43383974:-,pregnancy_specific_beta-1-glycoprotein_1	HCC4006_LUNG	0.3	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	CCDC130--ILF3	2	0	CCDC130	1526	chr19:13843099:+	ILF3	25491	chr19:10792669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	CCDC130->chr19:13842574-13874110:+,coiled-coil_domain_containing_130,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	HCC4006_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	OPN3--ASPH	2	0	OPN3	2592	chr1:241803184:-	ASPH	36028	chr8:62555992:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	OPN3->chr1:241753404-241840678:-,opsin_3,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	HCC4006_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	PSMD11--AC084809.3	2	0	PSMD11	10153	chr17:30801842:+	AC084809.3	20901	chr17:31233209:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	PSMD11->chr17:30771279-30810336:+,proteasome_26S_subunit,_non-ATPase_11,AC084809.3->chr17:31232680-31233602:+	HCC4006_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	ELL--UPF1	1	2	ELL	1207	chr19:18632731:-	UPF1	21441	chr19:18956789:+	ONLY_REF_SPLICE	YES	27	0	0.1	1	0.0111	0.0223	ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,UPF1->UPF1,_RNA_helicase_and_ATPase,chr19:18942747-18979045:+	HCC4006_LUNG	0.1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	KDM4B--FST	1	1	KDM4B	13519	chr19:5110829:+	FST	37400	chr5:52778710:+	ONLY_REF_SPLICE	NO	17	2	0.11	0.5	0.0111	0.0111	{Klijn_CCL:Lung=1},KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,FST->Oncogene{Bushman},chr5:52776239-52782964:+,follistatin	HCC4006_LUNG	0.11	0.5	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	RP1-179N16.6--RP1-167F1.2	1	1	RP1-179N16.6	3260	chr6:36147394:-	RP1-167F1.2	10631	chr6:19640814:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0111	0.0111	RP1-179N16.6->chr6:36114475-36164982:-,RP1-167F1.2->chr6:19535175-19839311:-	HCC4006_LUNG	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000066
COLO320_LARGE_INTESTINE	PTMA--PTMS	413	7	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	3058	446	0.12	0.48	3.9274	0.0666	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	COLO320_LARGE_INTESTINE	0.12	0.48	3.994	TRUE	0	0	0	16	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	RPRD2--GOLPH3L	378	115	RPRD2	2578	chr1:150337395:+	GOLPH3L	29116	chr1:150621224:-	ONLY_REF_SPLICE	YES	41	453	0.92	0.52	3.5946	1.0936	{Klijn_CCL:Colo-Rectal=1},RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,GOLPH3L->chr1:150618701-150669630:-,golgi_phosphoprotein_3_like	COLO320_LARGE_INTESTINE	0.52	0.92	4.6882	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	ANP32E--GOLPH3L	176	28	ANP32E	7151	chr1:150198940:-	GOLPH3L	17514	chr1:150636239:-	ONLY_REF_SPLICE	YES	576	238	0.26	0.46	1.6737	0.2663	{Klijn_CCL:Colo-Rectal=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,GOLPH3L->chr1:150618701-150669630:-,golgi_phosphoprotein_3_like	COLO320_LARGE_INTESTINE	0.26	0.46	1.94	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	CHD9--ANKRD26P1	82	24	CHD9	29643	chr16:53297009:+	ANKRD26P1	65314	chr16:46565046:-	ONLY_REF_SPLICE	YES	15	0	0.88	1	0.7798	0.2282	CHD9->Oncogene{Bushman},chr16:53088945-53363062:+,chromodomain_helicase_DNA_binding_protein_9,ANKRD26P1->ankyrin_repeat_domain_26_pseudogene_1,chr16:46503253-46603009:-	COLO320_LARGE_INTESTINE	0.88	1	1.008	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	PCAT1--CASC11	76	14	PCAT1	3907	chr8:128018863:+	CASC11	10908	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.7227	0.1331	PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	COLO320_LARGE_INTESTINE	0.97	1	0.8558	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-89K10.1--CASC11	49	11	RP11-89K10.1	2156	chr8:127601535:+	CASC11	13412	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	20	0	0.75	1	0.466	0.1046	RP11-89K10.1->chr8:127570120-127725660:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	COLO320_LARGE_INTESTINE	0.75	1	0.5706	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	SRP54--CCDC175	43	17	SRP54	4569	chr14:35465993:+	CCDC175	40855	chr14:59988394:-	ONLY_REF_SPLICE	YES	67	0	0.47	1	0.4089	0.1617	SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa,CCDC175->chr14:59971257-60043549:-,coiled-coil_domain_containing_175	COLO320_LARGE_INTESTINE	0.47	1	0.5706	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	CYLD--NKD1	35	14	CYLD	10221	chr16:50811852:+	NKD1	35304	chr16:50642205:+	ONLY_REF_SPLICE	YES	23	180	0.68	0.21	0.3328	0.1331	CYLD->ArcherDX_panel,CYLD_lysine_63_deubiquitinase,FoundationOne_panel,Oncogene{Bushman},chr16:50775961-50835846:+,NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1	COLO320_LARGE_INTESTINE	0.21	0.68	0.4659	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-89K10.1--CASC11	30	4	RP11-89K10.1	1057	chr8:127570176:+	CASC11	13412	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	12	0	0.74	1	0.2853	0.038	RP11-89K10.1->chr8:127570120-127725660:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	COLO320_LARGE_INTESTINE	0.74	1	0.3233	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	RPRD2--GOLPH3L	1	116	RPRD2	2578	chr1:150337395:+	GOLPH3L	26869	chr1:150636239:-	ONLY_REF_SPLICE	NO	41	238	0.74	0.33	0.0095	1.1031	{Klijn_CCL:Colo-Rectal=1},RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,GOLPH3L->chr1:150618701-150669630:-,golgi_phosphoprotein_3_like	COLO320_LARGE_INTESTINE	0.33	0.74	1.1126	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	PCAT1--CASC8	15	10	PCAT1	3907	chr8:128018863:+	CASC8	19014	chr8:128302305:-	ONLY_REF_SPLICE	YES	3	8	0.89	0.76	0.1426	0.0951	PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	COLO320_LARGE_INTESTINE	0.76	0.89	0.2377	TRUE	0	1	0	1	1	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	ANXA7--P4HA1	16	1	ANXA7	3333	chr10:75160561:-	P4HA1	20750	chr10:74834673:-	ONLY_REF_SPLICE	YES	16	17	0.52	0.5	0.1522	0.0095	ANXA7->annexin_A7,chr10:75134859-75173834:-,P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1	COLO320_LARGE_INTESTINE	0.5	0.52	0.1617	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	FAM84B--RP11-382A18.2	16	0	FAM84B	3129	chr8:127568510:-	RP11-382A18.2	9960	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1522	0	FAM84B->chr8:127564687-127570638:-,family_with_sequence_similarity_84_member_B,RP11-382A18.2->chr8:128351519-128404876:+	COLO320_LARGE_INTESTINE	1	1	0.1522	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	NEK6--INIP	14	2	NEK6	1480	chr9:127020364:+	INIP	25789	chr9:115456513:-	ONLY_REF_SPLICE	YES	0	53	1	0.23	0.1331	0.019	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-	COLO320_LARGE_INTESTINE	0.23	1	0.1521	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	SENP7--RPL24	13	4	SENP7	3297	chr3:101212717:-	RPL24	32195	chr3:101405401:-	ONLY_REF_SPLICE	YES	11	21	0.61	0.45	0.1236	0.038	SENP7->SUMO1/sentrin_specific_peptidase_7,chr3:101043049-101232085:-,RPL24->chr3:101399935-101405626:-,ribosomal_protein_L24	COLO320_LARGE_INTESTINE	0.45	0.61	0.1616	TRUE	0	0	0	2	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	NEK6--INIP	10	8	NEK6	5961	chr9:127055292:+	INIP	25789	chr9:115456513:-	ONLY_REF_SPLICE	YES	10	53	0.64	0.25	0.0951	0.0761	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-	COLO320_LARGE_INTESTINE	0.25	0.64	0.1712	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	BTRC--LBX1-AS1	9	1	BTRC	1166	chr10:103113985:+	LBX1-AS1	29258	chr10:102997696:+	ONLY_REF_SPLICE	YES	8	0	0.56	1	0.0856	0.0095	LOCAL_REARRANGEMENT:+:[83915],BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+,LBX1-AS1->LBX1_antisense_RNA_1_(head_to_head),chr10:102989351-103029905:+	COLO320_LARGE_INTESTINE	0.56	1	0.0951	TRUE	0	1	0	1	1	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	NEK6--INIP	7	8	NEK6	5961	chr9:127055292:+	INIP	23615	chr9:115478821:-	ONLY_REF_SPLICE	YES	10	59	0.6	0.2	0.0666	0.0761	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-	COLO320_LARGE_INTESTINE	0.2	0.6	0.1427	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	AS3MT--WBP1L	8	1	AS3MT	7247	chr10:104638748:+	WBP1L	16033	chr10:104557750:+	ONLY_REF_SPLICE	YES	16	25	0.36	0.26	0.0761	0.0095	LOCAL_REARRANGEMENT:+:[53252],AS3MT->arsenite_methyltransferase,chr10:104629273-104661656:+,WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+	COLO320_LARGE_INTESTINE	0.26	0.36	0.0856	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	AP000525.9--LA16c-60G3.6	6	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	76	1	0.08	0.88	0.0571	0.0095	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	COLO320_LARGE_INTESTINE	0.08	0.88	0.0666	TRUE	0	5	0	18	5	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	PCAT1--CASC8	2	10	PCAT1	3907	chr8:128018863:+	CASC8	17874	chr8:128335399:-	ONLY_REF_SPLICE	YES	3	4	0.8	0.75	0.019	0.0951	PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	COLO320_LARGE_INTESTINE	0.75	0.8	0.1141	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	NEK6--INIP	2	2	NEK6	1480	chr9:127020364:+	INIP	23615	chr9:115478821:-	ONLY_REF_SPLICE	YES	0	59	1	0.06	0.019	0.019	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-	COLO320_LARGE_INTESTINE	0.06	1	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	ANXA7--P4HA1	2	0	ANXA7	1065	chr10:75173770:-	P4HA1	20750	chr10:74834673:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	ANXA7->annexin_A7,chr10:75134859-75173834:-,P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1	COLO320_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	DANCR--GNB1	2	0	DANCR	1530	chr4:53579126:+	GNB1	9431	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	COLO320_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	8	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	LDLR--SMARCA4	2	0	LDLR	1254	chr19:11200291:+	SMARCA4	56989	chr19:11141406:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	LOCAL_REARRANGEMENT:+:[23967],LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	COLO320_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	NEK6--INIP	1	3	NEK6	5961	chr9:127055292:+	INIP	26989	chr9:115451897:-	ONLY_REF_SPLICE	NO	10	46	0.29	0.08	0.0095	0.0285	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-	COLO320_LARGE_INTESTINE	0.08	0.29	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	NEK6--INIP	1	2	NEK6	3918	chr9:127048769:+	INIP	25789	chr9:115456513:-	ONLY_REF_SPLICE	YES	7	53	0.3	0.05	0.0095	0.019	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-	COLO320_LARGE_INTESTINE	0.05	0.3	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000202
KP4_PANCREAS	ZNF227--COLEC10	43	20	ZNF227	4616	chr19:44722005:+	COLEC10	20444	chr8:120114587:+	ONLY_REF_SPLICE	YES	21	0	0.75	1	0.4508	0.2097	ZNF227->chr19:44711700-44741421:+,zinc_finger_protein_227,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	KP4_PANCREAS	0.75	1	0.6605	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	SMAD4--RP11-267C16.1	44	7	SMAD4	5470	chr18:48556993:+	RP11-267C16.1	33192	chr18:48899108:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4613	0.0734	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	KP4_PANCREAS	1	1	0.5347	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	BCR--CES5AP1	20	7	BCR	3536	chr22:23524426:+	CES5AP1	51396	chr22:23701940:-	ONLY_REF_SPLICE	YES	47	0	0.36	1	0.2097	0.0734	LOCAL_INVERSION:+:-:[41566],BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,CES5AP1->carboxylesterase_5A_pseudogene_1,chr22:23701790-23729918:-	KP4_PANCREAS	0.36	1	0.2831	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	PRDM15--ENTHD1	17	10	PRDM15	32877	chr21:43224694:-	ENTHD1	49796	chr22:40140288:-	ONLY_REF_SPLICE	YES	21	0	0.56	1	0.1782	0.1048	PRDM15->PR_domain_15,chr21:43218385-43299591:-,ENTHD1->ENTH_domain_containing_1,chr22:40139049-40289868:-	KP4_PANCREAS	0.56	1	0.283	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	SMAD4--RP11-267C16.1	12	1	SMAD4	5470	chr18:48556993:+	RP11-267C16.1	43939	chr18:49086963:+	ONLY_REF_SPLICE	YES	0	3	1	0.81	0.1258	0.0105	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	KP4_PANCREAS	0.81	1	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	SPECC1L--THOC5	8	0	SPECC1L	14016	chr22:24734445:+	THOC5	31664	chr22:29945147:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0839	0	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,THOC5->Oncogene{Bushman},THO_complex_5,chr22:29901868-29951205:-	KP4_PANCREAS	1	1	0.0839	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	TXNRD2--RP3-522J7.6	8	0	TXNRD2	4357	chr22:19918553:-	RP3-522J7.6	26675	chr22:50231200:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2,RP3-522J7.6->chr22:50226264-50231434:-	KP4_PANCREAS	1	1	0.0839	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	ZNF227--COLEC10	4	11	ZNF227	3044	chr19:44717397:+	COLEC10	20444	chr8:120114587:+	ONLY_REF_SPLICE	YES	25	0	0.38	1	0.0419	0.1153	ZNF227->chr19:44711700-44741421:+,zinc_finger_protein_227,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	KP4_PANCREAS	0.38	1	0.1572	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	USP34--NRXN1	6	1	USP34	1120	chr2:61697785:-	NRXN1	103853	chr2:50724852:-	ONLY_REF_SPLICE	YES	12	0	0.37	1	0.0629	0.0105	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,NRXN1->chr2:50145643-51259674:-,neurexin_1	KP4_PANCREAS	0.37	1	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	SMAD4--RP11-267C16.1	4	3	SMAD4	5470	chr18:48556993:+	RP11-267C16.1	42773	chr18:49058482:+	ONLY_REF_SPLICE	YES	0	4	1	0.64	0.0419	0.0315	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	KP4_PANCREAS	0.64	1	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	SMAD4--RP11-267C16.1	3	6	SMAD4	5470	chr18:48556993:+	RP11-267C16.1	34259	chr18:48913542:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0.0629	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	KP4_PANCREAS	1	1	0.0944	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	TMEM9B--SCUBE2	4	1	TMEM9B	3782	chr11:8983639:-	SCUBE2	35931	chr11:9047401:-	ONLY_REF_SPLICE	YES	83	0	0.06	1	0.0419	0.0105	LOCAL_REARRANGEMENT:-:[54513],TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,SCUBE2->chr11:9041071-9159661:-,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_2	KP4_PANCREAS	0.06	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	SPIDR--PES1	3	3	SPIDR	4404	chr8:48192605:+	PES1	41147	chr22:31001504:-	ONLY_REF_SPLICE	YES	57	1	0.1	0.86	0.0315	0.0315	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,PES1->chr22:30972612-31003070:-,pescadillo_ribosomal_biogenesis_factor_1	KP4_PANCREAS	0.1	0.86	0.063	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	PICK1--AP000233.4	2	1	PICK1	3960	chr22:38455352:+	AP000233.4	17785	chr21:26547759:-	ONLY_REF_SPLICE	YES	35	0	0.08	1	0.021	0.0105	PICK1->Oncogene{Bushman},chr22:38452318-38471708:+,protein_interacting_with_PRKCA_1,AP000233.4->chr21:26541745-26706139:-	KP4_PANCREAS	0.08	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	PICK1--AP000233.4	2	1	PICK1	2540	chr22:38453857:+	AP000233.4	17785	chr21:26547759:-	ONLY_REF_SPLICE	YES	46	0	0.06	1	0.021	0.0105	PICK1->Oncogene{Bushman},chr22:38452318-38471708:+,protein_interacting_with_PRKCA_1,AP000233.4->chr21:26541745-26706139:-	KP4_PANCREAS	0.06	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	APP--LINC00316	2	0	APP	20667	chr21:27326904:-	LINC00316	33342	chr21:46758793:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,LINC00316->chr21:46758505-46761905:-,long_intergenic_non-protein_coding_RNA_316	KP4_PANCREAS	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	RCC1--RPN2	2	0	RCC1	3948	chr1:28836616:+	RPN2	24909	chr20:35832288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RPN2->chr20:35806813-35870022:+,ribophorin_II	KP4_PANCREAS	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	TRPM7--TMEM14B	2	0	TRPM7	13722	chr15:50916363:-	TMEM14B	51978	chr6:10756700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	TRPM7->chr15:50844670-50979012:-,transient_receptor_potential_cation_channel_subfamily_M_member_7,TMEM14B->chr6:10747992-10852986:+,transmembrane_protein_14B	KP4_PANCREAS	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	SMAD4--RP11-267C16.1	1	3	SMAD4	5470	chr18:48556993:+	RP11-267C16.1	40621	chr18:49051332:+	ONLY_REF_SPLICE	NO	0	2	1	0.67	0.0105	0.0315	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	KP4_PANCREAS	0.67	1	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000265
HCC1833_LUNG	TAOK2--ABCA4	133	57	TAOK2	2008	chr16:29985969:+	ABCA4	62901	chr1:94476941:-	ONLY_REF_SPLICE	YES	153	0	0.55	1	1.5248	0.6535	TAOK2->TAO_kinase_2,chr16:29984962-30003582:+,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	HCC1833_LUNG	0.55	1	2.1783	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	RP11-499F3.2--TYW1	70	1	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	53	1	0.57	0.8025	0.0115	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	HCC1833_LUNG	0.57	1	0.814	TRUE	1	3	0	7	3	TRUE	ACH-000712
HCC1833_LUNG	ITPR2--SSPN	52	14	ITPR2	10193	chr12:26864106:-	SSPN	74097	chr12:26377226:+	ONLY_REF_SPLICE	YES	12	0	0.85	1	0.5962	0.1605	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[38119],ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	HCC1833_LUNG	0.85	1	0.7567	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	RABEP2--KCNB2	47	19	RABEP2	3613	chr16:28935724:-	KCNB2	22151	chr8:73848170:+	ONLY_REF_SPLICE	YES	186	46	0.26	0.59	0.5389	0.2178	RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2,KCNB2->chr8:73449626-73850584:+,potassium_voltage-gated_channel_subfamily_B_member_2	HCC1833_LUNG	0.26	0.59	0.7567	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	ATF6--PBX1	34	27	ATF6	6341	chr1:161762117:+	PBX1	69230	chr1:164818577:+	ONLY_REF_SPLICE	YES	93	201	0.4	0.23	0.3898	0.3096	ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	HCC1833_LUNG	0.23	0.4	0.6994	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	ATF6--PBX1	26	17	ATF6	6341	chr1:161762117:+	PBX1	72722	chr1:164853779:+	ONLY_REF_SPLICE	YES	93	8	0.32	0.84	0.2981	0.1949	ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	HCC1833_LUNG	0.32	0.84	0.493	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	KIAA0556--SH2B1	25	4	KIAA0556	2101	chr16:27585277:+	SH2B1	49974	chr16:28880327:+	ONLY_REF_SPLICE	YES	0	148	1	0.16	0.2866	0.0459	KIAA0556->KIAA0556,chr16:27561454-27791690:+,SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+	HCC1833_LUNG	0.16	1	0.3325	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	CCDC18--LUZP2	23	3	CCDC18	1934	chr1:93646409:+	LUZP2	53730	chr11:25098875:+	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.2637	0.0344	CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18,LUZP2->chr11:24518516-25104150:+,leucine_zipper_protein_2	HCC1833_LUNG	0.81	1	0.2981	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	KIAA0556--SH2B1	9	7	KIAA0556	3558	chr16:27629863:+	SH2B1	49974	chr16:28880327:+	INCL_NON_REF_SPLICE	YES	21	148	0.43	0.1	0.1032	0.0803	KIAA0556->KIAA0556,chr16:27561454-27791690:+,SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+	HCC1833_LUNG	0.1	0.43	0.1835	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	AUTS2--ABCA4	8	2	AUTS2	2044	chr7:69064948:+	ABCA4	38926	chr1:94578622:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0917	0.0229	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	HCC1833_LUNG	0.83	1	0.1146	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	RABEP2--KCNB2	3	11	RABEP2	3525	chr16:28935812:-	KCNB2	22151	chr8:73848170:+	INCL_NON_REF_SPLICE	YES	202	46	0.06	0.23	0.0344	0.1261	RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2,KCNB2->chr8:73449626-73850584:+,potassium_voltage-gated_channel_subfamily_B_member_2	HCC1833_LUNG	0.06	0.23	0.1605	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	ITPR2--SSPN	1	18	ITPR2	10193	chr12:26864106:-	SSPN	70196	chr12:26332929:+	ONLY_REF_SPLICE	YES	12	0	0.61	1	0.0115	0.2064	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[38119],ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	HCC1833_LUNG	0.61	1	0.2179	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	KIAA0556--SH2B1	5	2	KIAA0556	2101	chr16:27585277:+	SH2B1	51352	chr16:28883101:+	ONLY_REF_SPLICE	YES	0	145	1	0.05	0.0573	0.0229	KIAA0556->KIAA0556,chr16:27561454-27791690:+,SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+	HCC1833_LUNG	0.05	1	0.0802	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	ABCD3--SORT1	5	0	ABCD3	21961	chr1:94972198:+	SORT1	51257	chr1:109860591:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0573	0	ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+,SORT1->chr1:109852192-109940573:-,sortilin_1	HCC1833_LUNG	1	1	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	KIAA0556--SH2B1	4	2	KIAA0556	2101	chr16:27585277:+	SH2B1	51762	chr16:28883511:+	ONLY_REF_SPLICE	YES	0	148	1	0.04	0.0459	0.0229	KIAA0556->KIAA0556,chr16:27561454-27791690:+,SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+	HCC1833_LUNG	0.04	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	CCDC18--LUZP2	4	1	CCDC18	1361	chr1:93645836:+	LUZP2	53730	chr11:25098875:+	ONLY_REF_SPLICE	YES	88	0	0.05	1	0.0459	0.0115	CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18,LUZP2->chr11:24518516-25104150:+,leucine_zipper_protein_2	HCC1833_LUNG	0.05	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	KIAA0556--ATP2A1	4	0	KIAA0556	2101	chr16:27585277:+	ATP2A1	45602	chr16:28893772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0459	0	KIAA0556->KIAA0556,chr16:27561454-27791690:+,ATP2A1->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_1,chr16:28889726-28915830:+	HCC1833_LUNG	1	1	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	AP001347.6--ANKRD20A11P	3	3	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	13921	chr21:15342431:-	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0344	0.0344	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	HCC1833_LUNG	0.86	1	0.0688	TRUE	0	1	0	4	1	TRUE	ACH-000712
HCC1833_LUNG	KIAA0556--SH2B1	3	3	KIAA0556	2101	chr16:27585277:+	SH2B1	50153	chr16:28880506:+	INCL_NON_REF_SPLICE	YES	0	151	1	0.04	0.0344	0.0344	KIAA0556->KIAA0556,chr16:27561454-27791690:+,SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+	HCC1833_LUNG	0.04	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	KIAA0556--SH2B1	2	7	KIAA0556	3517	chr16:27629822:+	SH2B1	49974	chr16:28880327:+	ONLY_REF_SPLICE	YES	22	148	0.29	0.06	0.0229	0.0803	KIAA0556->KIAA0556,chr16:27561454-27791690:+,SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+	HCC1833_LUNG	0.06	0.29	0.1032	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	ABI2--CD28	3	0	ABI2	5910	chr2:204231767:+	CD28	45886	chr2:204591356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	ABI2->abl-interactor_2,chr2:204192942-204312446:+,CD28->CD28_molecule,chr2:204571198-204603635:+	HCC1833_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	RP11-435B5.4--MLLT10P1	3	0	RP11-435B5.4	2850	chr1:143465373:-	MLLT10P1	19611	chr20:29638047:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	RP11-435B5.4->chr1:143354963-143467632:-,MLLT10P1->chr20:29637799-29638060:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10_pseudogene_1	HCC1833_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	TAOK2--ABCA4	3	0	TAOK2	1286	chr16:29985247:+	ABCA4	63357	chr1:94476485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	TAOK2->TAO_kinase_2,chr16:29984962-30003582:+,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	HCC1833_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	CCDC18--LUZP2	2	1	CCDC18	1500	chr1:93645975:+	LUZP2	53730	chr11:25098875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0.0115	CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18,LUZP2->chr11:24518516-25104150:+,leucine_zipper_protein_2	HCC1833_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	CCDC18--LUZP2	1	4	CCDC18	1964	chr1:93646439:+	LUZP2	53730	chr11:25098875:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0115	0.0459	CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18,LUZP2->chr11:24518516-25104150:+,leucine_zipper_protein_2	HCC1833_LUNG	0.62	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	FRYL--DHX15	2	0	FRYL	1245	chr4:48782095:-	DHX15	85535	chr4:24578301:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,DHX15->DEAH-box_helicase_15,chr4:24519064-24586173:-	HCC1833_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	ING5--ATG4B	2	0	ING5	2140	chr2:242644139:+	ATG4B	24618	chr2:242593961:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LOCAL_REARRANGEMENT:+:[28178],ING5->chr2:242641450-242668893:+,inhibitor_of_growth_family_member_5,ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+	HCC1833_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	MFSD8--LARP1B	2	0	MFSD8	1924	chr4:128886227:-	LARP1B	37909	chr4:129120594:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LOCAL_INVERSION:-:+:[95273],MFSD8->chr4:128838960-128887150:-,major_facilitator_superfamily_domain_containing_8,LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+	HCC1833_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	SETD5--UBE2E1	2	0	SETD5	1363	chr3:9439661:+	UBE2E1	44312	chr3:23929058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	SETD5->SET_domain_containing_5,chr3:9439299-9520924:+,UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1	HCC1833_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	SPIN1--ESRRA	2	0	SPIN1	1120	chr9:91003453:+	ESRRA	19287	chr11:64074640:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	SPIN1->chr9:91003334-91093609:+,spindlin_1,ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha	HCC1833_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	AP001347.6--ANKRD20A11P	1	2	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	19348	chr21:15326471:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0115	0.0229	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	HCC1833_LUNG	0.75	1	0.0344	TRUE	0	1	0	3	1	TRUE	ACH-000712
HCC1833_LUNG	AP001347.6--ANKRD20A11P	1	1	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	20433	chr21:15323581:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0115	0.0115	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	HCC1833_LUNG	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	SNX13--BMPER	1	1	SNX13	1218	chr7:17979907:-	BMPER	51508	chr7:34006091:+	ONLY_REF_SPLICE	YES	33	2	0.06	0.5	0.0115	0.0115	SNX13->chr7:17830385-17980124:-,sorting_nexin_13,BMPER->BMP_binding_endothelial_regulator,chr7:33944523-34195484:+	HCC1833_LUNG	0.06	0.5	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000712
NCIH2444_LUNG	MAP3K1--ABLIM3	22	4	MAP3K1	9453	chr5:56171137:+	ABLIM3	27052	chr5:148563015:+	ONLY_REF_SPLICE	YES	12	25	0.68	0.51	0.2009	0.0365	MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1,ABLIM3->actin_binding_LIM_protein_family_member_3,chr5:148521046-148640105:+	NCIH2444_LUNG	0.51	0.68	0.2374	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	PDE4D--POU4F3	20	3	PDE4D	39303	chr5:58334686:-	POU4F3	58579	chr5:145718666:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1826	0.0274	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,POU4F3->POU_class_4_homeobox_3,chr5:145718587-145720083:+	NCIH2444_LUNG	1	1	0.21	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	PPP2R4--NUP188	12	12	PPP2R4	16381	chr9:131904831:+	NUP188	30497	chr9:131730785:+	ONLY_REF_SPLICE	YES	207	24	0.1	0.5	0.1096	0.1096	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,NUP188->chr9:131709978-131769375:+,nucleoporin_188kDa	NCIH2444_LUNG	0.1	0.5	0.2192	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	SETD3--AL109767.1	10	1	SETD3	7443	chr14:99924616:-	AL109767.1	23438	chr14:99730475:+	ONLY_REF_SPLICE	YES	129	0	0.08	1	0.0913	0.0091	SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,AL109767.1->chr14:99729285-99731072:+	NCIH2444_LUNG	0.08	1	0.1004	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	SUPT3H--BAI3	8	1	SUPT3H	2744	chr6:45332938:-	BAI3	26721	chr6:69640451:+	ONLY_REF_SPLICE	YES	42	1	0.18	0.9	0.073	0.0091	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,BAI3->chr6:69345259-70099403:+	NCIH2444_LUNG	0.18	0.9	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	GRB2--TSPAN12	5	1	GRB2	8512	chr17:73317740:-	TSPAN12	23341	chr7:120446746:-	ONLY_REF_SPLICE	YES	92	13	0.06	0.32	0.0457	0.0091	GRB2->Oncogene{Bushman},chr17:73314157-73401790:-,growth_factor_receptor_bound_protein_2,TSPAN12->chr7:120427376-120498456:-,tetraspanin_12	NCIH2444_LUNG	0.06	0.32	0.0548	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	LARP1--ABLIM3	5	0	LARP1	19930	chr5:154191200:+	ABLIM3	36934	chr5:148610212:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0457	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,ABLIM3->actin_binding_LIM_protein_family_member_3,chr5:148521046-148640105:+	NCIH2444_LUNG	1	1	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	RPL23AP79--SAMD12	3	2	RPL23AP79	2311	chr19:59086955:+	SAMD12	18562	chr8:119391939:-	ONLY_REF_SPLICE	YES	30	13	0.14	0.28	0.0274	0.0183	RPL23AP79->chr19:59084870-59111168:+,ribosomal_protein_L23a_pseudogene_79,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	NCIH2444_LUNG	0.14	0.28	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	ADAP1--MAD1L1	2	0	ADAP1	9672	chr7:959605:-	MAD1L1	53647	chr7:1938026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	FN1--C9orf3	2	0	FN1	14797	chr2:216279560:-	C9orf3	91728	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	KCMF1--FN1	2	0	KCMF1	5579	chr2:85262278:+	FN1	65209	chr2:216230353:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	KCMF1->Oncogene{Bushman},chr2:85198216-85286595:+,potassium_channel_modulatory_factor_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	MYH9--PKM	2	0	MYH9	5055	chr22:36737415:-	PKM	51182	chr15:72511451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	RCC1--PSMG3	2	0	RCC1	2175	chr1:28834672:+	PSMG3	20523	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	2	0	TRUE	ACH-000186
NCIH2444_LUNG	RP11-466I1.1--CTD-3012A18.1	2	0	RP11-466I1.1	2424	chr11:29233312:+	CTD-3012A18.1	8905	chr11:29573907:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	RP11-466I1.1->chr11:29181503-29288281:+,CTD-3012A18.1->chr11:29540623-29574186:+	NCIH2444_LUNG	1	1	0.0183	TRUE	0	2	0	4	2	TRUE	ACH-000186
NCIH2444_LUNG	RPS6KA4--MROH1	2	0	RPS6KA4	3402	chr11:64129021:+	MROH1	18317	chr8:145234358:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	RPS6KA4->chr11:64126620-64139687:+,ribosomal_protein_S6_kinase_A4,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	SLC39A9--KIAA0247	2	0	SLC39A9	6891	chr14:69908983:+	KIAA0247	20622	chr14:70125230:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	SLC39A9->chr14:69864732-69929105:+,solute_carrier_family_39_member_9,KIAA0247->chr14:70078313-70181859:+	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	TWSG1--VAPA	2	0	TWSG1	2314	chr18:9337350:+	VAPA	24729	chr18:9950392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	TWSG1->chr18:9334765-9402418:+,twisted_gastrulation_BMP_signaling_modulator_1,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	NCIH2444_LUNG	1	1	0.0183	TRUE	0	1	0	1	1	TRUE	ACH-000186
A101D_SKIN	YBX1--CCDC30	241	85	YBX1	5138	chr1:43162933:+	CCDC30	41381	chr1:43057761:+	INCL_NON_REF_SPLICE	YES	3678	29	0.08	0.92	2.7212	0.9598	LOCAL_REARRANGEMENT:+:[27763],YBX1->Oncogene{Bushman},Y-box_binding_protein_1,chr1:43148098-43168020:+,CCDC30->chr1:42929001-43120335:+,coiled-coil_domain_containing_30	A101D_SKIN	0.08	0.92	3.681	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	OSBPL5--KCNQ1-AS1	40	4	OSBPL5	2524	chr11:3186446:-	KCNQ1-AS1	32837	chr11:2861672:-	ONLY_REF_SPLICE	YES	3	0	0.94	1	0.4516	0.0452	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	A101D_SKIN	0.94	1	0.4968	TRUE	0	0	0	2	0	TRUE	ACH-000008
A101D_SKIN	BAGE2--CTBP2P1	25	7	BAGE2	5645	chr21:11058161:-	CTBP2P1	23085	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	67	0	0.32	1	0.2823	0.079	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	A101D_SKIN	0.32	1	0.3613	TRUE	0	0	0	6	0	TRUE	ACH-000008
A101D_SKIN	OSBPL5--KCNQ1-AS1	9	1	OSBPL5	2517	chr11:3186453:-	KCNQ1-AS1	32837	chr11:2861672:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.1016	0.0113	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	A101D_SKIN	0.83	1	0.1129	TRUE	0	0	0	2	0	TRUE	ACH-000008
A101D_SKIN	RPTOR--JMJD6	5	4	RPTOR	1973	chr17:78519591:+	JMJD6	49452	chr17:74721937:-	ONLY_REF_SPLICE	YES	50	142	0.15	0.06	0.0565	0.0452	RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,JMJD6->arginine_demethylase_and_lysine_hydroxylase,chr17:74708919-74722866:-	A101D_SKIN	0.06	0.15	0.1017	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	AC027612.3--AP000345.1	5	1	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0565	0.0113	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	A101D_SKIN	0.5	1	0.0678	TRUE	0	0	0	11	0	TRUE	ACH-000008
A101D_SKIN	OSBPL5--KCNQ1-AS1	3	4	OSBPL5	2524	chr11:3186446:-	KCNQ1-AS1	31640	chr11:2880169:-	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0339	0.0452	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	A101D_SKIN	0.7	1	0.0791	TRUE	0	0	0	2	0	TRUE	ACH-000008
A101D_SKIN	EXOC2--LINC00240	3	0	EXOC2	1099	chr6:693019:-	LINC00240	44855	chr6:26991033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	EXOC2->chr6:485133-693117:-,exocyst_complex_component_2,LINC00240->chr6:26924771-26991703:+,long_intergenic_non-protein_coding_RNA_240	A101D_SKIN	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	VIM--GPX1	3	0	VIM	2101	chr10:17271358:+	GPX1	13186	chr3:49395052:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},VIM->chr10:17270258-17279592:+,vimentin,GPX1->Oncogene{Bushman},chr3:49394609-49396033:-,glutathione_peroxidase_1	A101D_SKIN	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	AC027612.3--AP000345.1	2	1	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0.0113	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	A101D_SKIN	1	1	0.0339	TRUE	0	0	0	11	0	TRUE	ACH-000008
A101D_SKIN	ABL2--TOR3A	2	0	ABL2	6230	chr1:179095512:-	TOR3A	36121	chr1:179063228:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_INVERSION:-:+:[1304],ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,TOR3A->chr1:179050512-179067158:+,torsin_family_3_member_A	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	ATRX--ACSL4	2	0	ATRX	20367	chrX:76907604:-	ACSL4	56952	chrX:108917702:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,ACSL4->acyl-CoA_synthetase_long-chain_family_member_4,chrX:108867473-108976632:-	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	EXOC2--LINC00240	2	0	EXOC2	2173	chr6:689139:-	LINC00240	44855	chr6:26991033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	EXOC2->chr6:485133-693117:-,exocyst_complex_component_2,LINC00240->chr6:26924771-26991703:+,long_intergenic_non-protein_coding_RNA_240	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	EXT1--MAP3K5	2	0	EXT1	2769	chr8:119122324:-	MAP3K5	39704	chr6:136944119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,MAP3K5->chr6:136878185-137113656:-,mitogen-activated_protein_kinase_kinase_kinase_5	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	FAM126A--OLA1	2	0	FAM126A	1206	chr7:23053544:-	OLA1	27513	chr2:175006728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	FAM126A->chr7:22980878-23053749:-,family_with_sequence_similarity_126_member_A,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	OSBPL5--KCNQ1-AS1	1	4	OSBPL5	3800	chr11:3185170:-	KCNQ1-AS1	31640	chr11:2880169:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0113	0.0452	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	A101D_SKIN	0.56	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	PLD1--SARS	2	0	PLD1	1552	chr3:171528189:-	SARS	47003	chr1:109766600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1,SARS->chr1:109756540-109780791:+,seryl-tRNA_synthetase	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	REV3L--HEXB	2	0	REV3L	11027	chr6:111710309:-	HEXB	63742	chr5:74016253:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,HEXB->chr5:73935848-74018472:+,hexosaminidase_subunit_beta	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	ZNF615--MORC2	2	0	ZNF615	1090	chr19:52511394:-	MORC2	17854	chr22:31354680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ZNF615->chr19:52494585-52511483:-,zinc_finger_protein_615,MORC2->MORC_family_CW-type_zinc_finger_2,chr22:31321117-31364284:-	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	PRIM2--BEND6	1	1	PRIM2	8956	chr6:57246966:+	BEND6	26887	chr6:56846509:+	ONLY_REF_SPLICE	YES	46	6	0.04	0.25	0.0113	0.0113	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,BEND6->BEN_domain_containing_6,chr6:56819773-56892140:+	A101D_SKIN	0.04	0.25	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	39	33	KMT2A	18437	chr11:118355690:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	6	6	0.92	0.92	0.5554	0.4699	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.92	1.0253	TRUE	0	0	0	4	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PTCD3	28	0	C17orf76-AS1	3754	chr17:16344889:+	PTCD3	29917	chr2:86359744:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3987	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3987	TRUE	0	0	0	4	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	21	28	KMT2A	17776	chr11:118355029:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	6	6	0.89	0.89	0.299	0.3987	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.89	0.6977	TRUE	0	0	0	4	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PTCD3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0285	TRUE	0	3	0	8	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf48--LINS	2	0	C19orf48	3713	chr19:51305474:-	LINS	22212	chr15:101110322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	C19orf48->chr19:51300961-51308186:-,chromosome_19_open_reading_frame_48,LINS->chr15:101099574-101143435:-	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C20orf197--PHACTR3	2	0	C20orf197	1084	chr20:58631063:+	PHACTR3	16564	chr20:58318162:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	C20orf197->chr20:58630980-58648008:+,chromosome_20_open_reading_frame_197,PHACTR3->chr20:58152564-58422766:+,phosphatase_and_actin_regulator_3	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKBKB--IRF2BP2	2	0	IKBKB	1904	chr8:42129723:+	IRF2BP2	29439	chr1:234743598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--CSDE1	2	0	RCC1	2175	chr1:28834672:+	CSDE1	38760	chr1:115263338:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-352G18.2--SEC16A	2	0	RP11-352G18.2	1294	chr15:66623748:-	SEC16A	28369	chr9:139342361:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	RP11-352G18.2->chr15:66607252-66624041:-,SEC16A->SEC16_homolog_A,_endoplasmic_reticulum_export_factor,chr9:139334549-139372141:-	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000362
SNU503_LARGE_INTESTINE	MTF2--RPL5	799	295	MTF2	1297	chr1:93545088:+	RPL5	26459	chr1:93306108:+	ONLY_REF_SPLICE	YES	83	2949	0.93	0.27	8.9932	3.3204	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	SNU503_LARGE_INTESTINE	0.27	0.93	12.3136	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	DNTTIP2--ARHGAP29	212	125	DNTTIP2	5274	chr1:94341201:-	ARHGAP29	46419	chr1:94616071:-	ONLY_REF_SPLICE	YES	182	0	0.65	1	2.3862	1.4069	DNTTIP2->chr1:94333373-94345474:-,deoxynucleotidyltransferase_terminal_interacting_protein_2,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	SNU503_LARGE_INTESTINE	0.65	1	3.7931	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	CCAT1--CASC8	127	105	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	56	1	0.81	1	1.4295	1.1818	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU503_LARGE_INTESTINE	0.81	1	2.6113	TRUE	0	26	0	18	24	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	NPLOC4--PDE6G	110	37	NPLOC4	2267	chr17:79603942:-	PDE6G	37655	chr17:79620394:-	ONLY_REF_SPLICE	YES	16	7	0.9	0.95	1.2381	0.4165	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	SNU503_LARGE_INTESTINE	0.9	0.95	1.6546	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	PTAR1--FAM189A2	106	6	PTAR1	1107	chr9:72374769:-	FAM189A2	30540	chr9:71998546:+	ONLY_REF_SPLICE	YES	6	0	0.95	1	1.1931	0.0675	PTAR1->chr9:72324438-72374875:-,protein_prenyltransferase_alpha_subunit_repeat_containing_1,FAM189A2->chr9:71939488-72007371:+,family_with_sequence_similarity_189_member_A2	SNU503_LARGE_INTESTINE	0.95	1	1.2606	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	NPLOC4--PDE6G	100	27	NPLOC4	2267	chr17:79603942:-	PDE6G	38860	chr17:79618715:-	ONLY_REF_SPLICE	YES	16	52	0.89	0.71	1.1256	0.3039	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	SNU503_LARGE_INTESTINE	0.71	0.89	1.4295	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RAB40C--CAPN15	43	11	RAB40C	2077	chr16:640433:+	CAPN15	21038	chr16:596817:+	ONLY_REF_SPLICE	YES	23	14	0.7	0.79	0.484	0.1238	LOCAL_REARRANGEMENT:+:[34721],RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,CAPN15->calpain_15,chr16:577717-604636:+	SNU503_LARGE_INTESTINE	0.7	0.79	0.6078	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	CAV2--NIN	42	12	CAV2	25408	chr7:116147428:+	NIN	71381	chr14:51186699:-	INCL_NON_REF_SPLICE	YES	16	3	0.77	0.95	0.4727	0.1351	CAV2->caveolin_2,chr7:115927434-116148595:+,NIN->Oncogene{Bushman},chr14:51186481-51297839:-,ninein	SNU503_LARGE_INTESTINE	0.77	0.95	0.6078	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-255B23.4--CASC8	30	19	RP11-255B23.4	2391	chr8:128200030:-	CASC8	14642	chr8:128302305:-	ONLY_REF_SPLICE	YES	12	1	0.8	0.98	0.3377	0.2139	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU503_LARGE_INTESTINE	0.8	0.98	0.5516	TRUE	0	3	0	2	3	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	TBC1D32--CTD-2143L24.1	21	4	TBC1D32	27616	chr6:121484116:-	CTD-2143L24.1	48643	chr5:9884116:-	ONLY_REF_SPLICE	YES	7	0	0.78	1	0.2364	0.045	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,CTD-2143L24.1->chr5:9641417-9903938:-	SNU503_LARGE_INTESTINE	0.78	1	0.2814	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	NPLOC4--PDE6G	11	42	NPLOC4	2267	chr17:79603942:-	PDE6G	36207	chr17:79623640:-	INCL_NON_REF_SPLICE	YES	16	10	0.77	0.84	0.1238	0.4727	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	SNU503_LARGE_INTESTINE	0.77	0.84	0.5965	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	KANSL1--ARL17B	14	5	KANSL1	2697	chr17:44301037:-	ARL17B	44367	chr17:44352784:-	ONLY_REF_SPLICE	YES	29	0	0.4	1	0.1576	0.0563	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SNU503_LARGE_INTESTINE	0.4	1	0.2139	TRUE	0	0	0	2	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	UBE4B--APITD1	11	10	UBE4B	1863	chr1:10093752:+	APITD1	43815	chr1:10500404:+	ONLY_REF_SPLICE	YES	72	81	0.23	0.21	0.1238	0.1126	UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,APITD1->apoptosis-inducing,_TAF9-like_domain_1,chr1:10490159-10512210:+	SNU503_LARGE_INTESTINE	0.21	0.23	0.2364	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	DNTTIP2--ARHGAP29	3	37	DNTTIP2	4651	chr1:94341824:-	ARHGAP29	46419	chr1:94616071:-	ONLY_REF_SPLICE	YES	198	0	0.17	1	0.0338	0.4165	DNTTIP2->chr1:94333373-94345474:-,deoxynucleotidyltransferase_terminal_interacting_protein_2,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	SNU503_LARGE_INTESTINE	0.17	1	0.4503	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	NPLOC4--PDE6G	3	35	NPLOC4	2267	chr17:79603942:-	PDE6G	37707	chr17:79620342:-	INCL_NON_REF_SPLICE	YES	16	12	0.7	0.76	0.0338	0.3939	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	SNU503_LARGE_INTESTINE	0.7	0.76	0.4277	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-255B23.4--CASC8	11	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	14642	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1238	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU503_LARGE_INTESTINE	1	1	0.1238	TRUE	0	9	0	3	9	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	SLC25A42--ARMC6	10	0	SLC25A42	1117	chr19:19174924:+	ARMC6	18956	chr19:19153520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1126	0	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[4245],SLC25A42->chr19:19174808-19223697:+,solute_carrier_family_25_member_42,ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+	SNU503_LARGE_INTESTINE	1	1	0.1126	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RAB40C--CAPN15	6	12	RAB40C	3209	chr16:646448:+	CAPN15	21038	chr16:596817:+	ONLY_REF_SPLICE	YES	28	14	0.39	0.56	0.0675	0.1351	LOCAL_REARRANGEMENT:+:[34721],RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,CAPN15->calpain_15,chr16:577717-604636:+	SNU503_LARGE_INTESTINE	0.39	0.56	0.2026	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	UBE4B--APITD1	5	16	UBE4B	1863	chr1:10093752:+	APITD1	41742	chr1:10493899:+	ONLY_REF_SPLICE	YES	72	71	0.23	0.23	0.0563	0.1801	UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,APITD1->apoptosis-inducing,_TAF9-like_domain_1,chr1:10490159-10512210:+	SNU503_LARGE_INTESTINE	0.23	0.23	0.2364	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-255B23.4--CASC8	4	16	RP11-255B23.4	2379	chr8:128200042:-	CASC8	14642	chr8:128302305:-	INCL_NON_REF_SPLICE	YES	11	1	0.65	0.95	0.045	0.1801	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU503_LARGE_INTESTINE	0.65	0.95	0.2251	TRUE	0	3	0	2	3	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	TTC28--AP1B1	7	2	TTC28	2523	chr22:29025540:-	AP1B1	59249	chr22:29730399:-	ONLY_REF_SPLICE	YES	5	102	0.64	0.08	0.0788	0.0225	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,AP1B1->adaptor_related_protein_complex_1_beta_1_subunit,chr22:29723669-29819168:-	SNU503_LARGE_INTESTINE	0.08	0.64	0.1013	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	NPLOC4--PDE6G	1	21	NPLOC4	2267	chr17:79603942:-	PDE6G	39395	chr17:79618180:-	ONLY_REF_SPLICE	NO	16	47	0.58	0.32	0.0113	0.2364	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	SNU503_LARGE_INTESTINE	0.32	0.58	0.2477	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	BPGM--AKR1B10	4	0	BPGM	1130	chr7:134331689:+	AKR1B10	11809	chr7:134215395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0	GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Lung=1,=1},BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+,AKR1B10->aldo-keto_reductase_family_1,_member_B10_(aldose_reductase),chr7:134212344-134226160:+	SNU503_LARGE_INTESTINE	1	1	0.045	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	GSE1--SLC7A5	4	0	GSE1	2365	chr16:85647004:+	SLC7A5	30231	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	SNU503_LARGE_INTESTINE	1	1	0.045	TRUE	0	0	0	3	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	UBE4B--APITD1	1	12	UBE4B	1863	chr1:10093752:+	APITD1	42557	chr1:10494714:+	ONLY_REF_SPLICE	YES	72	77	0.15	0.14	0.0113	0.1351	UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,APITD1->apoptosis-inducing,_TAF9-like_domain_1,chr1:10490159-10512210:+	SNU503_LARGE_INTESTINE	0.14	0.15	0.1464	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RAB6B--RP11-200A1.1	3	3	RAB6B	4635	chr3:133583428:-	RP11-200A1.1	18944	chr3:134039762:+	ONLY_REF_SPLICE	YES	95	0	0.06	1	0.0338	0.0338	RAB6B->RAB6B,_member_RAS_oncogene_family,chr3:133543083-133614680:-,RP11-200A1.1->chr3:134032418-134040013:+	SNU503_LARGE_INTESTINE	0.06	1	0.0676	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	AARS--RP11-529K1.2	3	0	AARS	12779	chr16:70294947:-	RP11-529K1.2	27481	chr16:70350045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:-:[26097],AARS->alanyl-tRNA_synthetase,chr16:70286198-70323446:-,RP11-529K1.2->chr16:70349543-70380650:-	SNU503_LARGE_INTESTINE	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	ITM2B--RPL8	3	0	ITM2B	1155	chr13:48807448:+	RPL8	13003	chr8:146017273:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B,RPL8->chr8:146015150-146017972:-,ribosomal_protein_L8	SNU503_LARGE_INTESTINE	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	TBC1D32--CTD-2143L24.1	2	2	TBC1D32	27616	chr6:121484116:-	CTD-2143L24.1	48648	chr5:9884111:-	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0225	0.0225	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,CTD-2143L24.1->chr5:9641417-9903938:-	SNU503_LARGE_INTESTINE	0.36	1	0.045	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	CDCA7L--STK31	2	0	CDCA7L	1304	chr7:21985399:-	STK31	28775	chr7:23792336:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CDCA7L->cell_division_cycle_associated_7_like,chr7:21940518-21985702:-,STK31->chr7:23749786-23872132:+,serine/threonine_kinase_31	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	GBA2--RP1-27K12.2	2	0	GBA2	10354	chr9:35737745:-	RP1-27K12.2	16558	chr6:53438073:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GBA2->chr9:35736863-35749983:-,glucosylceramidase_beta_2,RP1-27K12.2->chr6:53426087-53481969:-	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	INTS9--HMBOX1	2	0	INTS9	1369	chr8:28747391:-	HMBOX1	30374	chr8:28821328:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_INVERSION:-:+:[152],INTS9->chr8:28625178-28747759:-,integrator_complex_subunit_9,HMBOX1->chr8:28747911-28922281:+,homeobox_containing_1	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RUFY3--CNOT1	2	0	RUFY3	22654	chr4:71660611:+	CNOT1	49455	chr16:58592578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RUFY3->RUN_and_FYVE_domain_containing_3,chr4:71569921-71673032:+,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	SCCPDH--SMYD3	2	0	SCCPDH	2679	chr1:246890306:+	SMYD3	36270	chr1:246093239:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	SCCPDH->chr1:246887349-246931439:+,saccharopine_dehydrogenase_(putative),SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	2	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	SLC25A42--ARMC6	2	0	SLC25A42	1048	chr19:19174855:+	ARMC6	18956	chr19:19153520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[4245],SLC25A42->chr19:19174808-19223697:+,solute_carrier_family_25_member_42,ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	SLC25A42--ARMC6	2	0	SLC25A42	1117	chr19:19174924:+	ARMC6	18961	chr19:19153525:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[4245],SLC25A42->chr19:19174808-19223697:+,solute_carrier_family_25_member_42,ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	SUMF2--CCT6A	2	0	SUMF2	3658	chr7:56140804:+	CCT6A	20326	chr7:56127962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[13],SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	5	0	5	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	UBE4B--APITD1	2	0	UBE4B	1863	chr1:10093752:+	APITD1	46427	chr1:10511434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,APITD1->apoptosis-inducing,_TAF9-like_domain_1,chr1:10490159-10512210:+	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-255B23.4--CASC8	1	2	RP11-255B23.4	2131	chr8:128200290:-	CASC8	14642	chr8:128302305:-	ONLY_REF_SPLICE	NO	4	1	0.43	0.75	0.0113	0.0225	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU503_LARGE_INTESTINE	0.43	0.75	0.0338	TRUE	0	3	0	2	3	TRUE	ACH-000683
HSC3_UPPER_AERODIGESTIVE_TRACT	LAMA3--S1PR2	31	29	LAMA3	65638	chr18:21501549:+	S1PR2	84244	chr19:10335623:-	ONLY_REF_SPLICE	YES	950	0	0.06	1	0.3979	0.3722	LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,S1PR2->chr19:10334520-10341948:-,sphingosine-1-phosphate_receptor_2	HSC3_UPPER_AERODIGESTIVE_TRACT	0.06	1	0.7701	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	FLJ27365--KIF6	12	8	FLJ27365	9508	chr22:46505788:+	KIF6	37987	chr6:39398937:-	INCL_NON_REF_SPLICE	YES	9	0	0.69	1	0.154	0.1027	FLJ27365->chr22:46449749-46509808:+,KIF6->chr6:39297766-39693181:-,kinesin_family_member_6	HSC3_UPPER_AERODIGESTIVE_TRACT	0.69	1	0.2567	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	AMOTL1--MACROD1	10	9	AMOTL1	5722	chr11:94528326:+	MACROD1	31446	chr11:63919865:-	ONLY_REF_SPLICE	YES	425	5	0.04	0.79	0.1283	0.1155	AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+,MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-	HSC3_UPPER_AERODIGESTIVE_TRACT	0.04	0.79	0.2438	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	FBRSL1--RP3-422G23.4	9	4	FBRSL1	19923	chr12:133153517:+	RP3-422G23.4	28953	chr6:138703637:+	ONLY_REF_SPLICE	YES	91	1	0.12	0.93	0.1155	0.0513	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,RP3-422G23.4->chr6:138699042-138704212:+	HSC3_UPPER_AERODIGESTIVE_TRACT	0.12	0.93	0.1668	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	C11orf80--MAPKAPK5	6	5	C11orf80	4815	chr11:66526567:+	MAPKAPK5	32761	chr12:112318251:+	ONLY_REF_SPLICE	YES	75	82	0.13	0.12	0.077	0.0642	C11orf80->chr11:66511922-66610987:+,chromosome_11_open_reading_frame_80,MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5	HSC3_UPPER_AERODIGESTIVE_TRACT	0.12	0.13	0.1412	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	FBRSL1--RP3-422G23.4	3	4	FBRSL1	19923	chr12:133153517:+	RP3-422G23.4	27716	chr6:138699084:+	INCL_NON_REF_SPLICE	YES	91	0	0.07	1	0.0385	0.0513	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,RP3-422G23.4->chr6:138699042-138704212:+	HSC3_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0898	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	C1orf63--ASH1L	3	0	C1orf63	8720	chr1:25594231:-	ASH1L	32285	chr1:155385714:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0385	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RP11-83A24.2--SETD7	2	2	RP11-83A24.2	1350	chr4:140374839:-	SETD7	27410	chr4:140468203:-	ONLY_REF_SPLICE	YES	8	73	0.33	0.05	0.0257	0.0257	LOCAL_REARRANGEMENT:-:[41907],RP11-83A24.2->chr4:140333081-140375188:-,SETD7->SET_domain_containing_lysine_methyltransferase_7,chr4:140417095-140527853:-	HSC3_UPPER_AERODIGESTIVE_TRACT	0.05	0.33	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	ASB13--LTBP2	2	0	ASB13	2275	chr10:5694826:-	LTBP2	24434	chr14:74995825:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	ASB13->ankyrin_repeat_and_SOCS_box_containing_13,chr10:5680830-5708558:-,LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	CD44--ARNTL2	2	0	CD44	6502	chr11:35211612:+	ARNTL2	32011	chr12:27521195:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	CDH4--SEPT9	2	0	CDH4	2257	chr20:59829993:+	SEPT9	58971	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	CDH4->cadherin_4,chr20:59827482-60515673:+,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	DTWD2--TNFAIP8	2	0	DTWD2	4795	chr5:118264232:-	TNFAIP8	21409	chr5:118728511:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	DTWD2->DTW_domain_containing_2,chr5:118173017-118324240:-,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	FRMD6--SAV1	2	0	FRMD6	11179	chr14:52118714:+	SAV1	37253	chr14:51132337:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,SAV1->Oncogene{Bushman},chr14:51098776-51135049:-,salvador_family_WW_domain_containing_protein_1	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	HNRNPR--CDC42	2	0	HNRNPR	1126	chr1:23670704:-	CDC42	24999	chr1:22404922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	NUP88--POLG	2	0	NUP88	16928	chr17:5289458:-	POLG	23113	chr15:89877144:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	NUP88->chr17:5264258-5323480:-,nucleoporin_88,POLG->chr15:89859534-89878092:-,polymerase_(DNA)_gamma,_catalytic_subunit	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	NVL--PGBD2	2	0	NVL	1317	chr1:224517773:-	PGBD2	36618	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	NVL->chr1:224415036-224518089:-,nuclear_VCP-like,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	TEX35--GAS5	2	0	TEX35	16062	chr1:178516298:+	GAS5	24763	chr1:173833644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	TEX35->chr1:178482212-178517734:+,testis_expressed_35,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	TMEM184B--C11orf48	2	0	TMEM184B	4621	chr22:38641941:-	C11orf48	24726	chr11:62430805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	TMEM184B->chr22:38615298-38669040:-,transmembrane_protein_184B,C11orf48->chr11:62430287-62439727:-	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	WISP3--GTPBP4	2	0	WISP3	1334	chr6:112375608:+	GTPBP4	23770	chr10:1055469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	WISP3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},WNT1_inducible_signaling_pathway_protein_3,chr6:112375275-112392171:+,GTPBP4->GTP_binding_protein_4,chr10:1034338-1065876:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	APOLD1--RPH3A	1	1	APOLD1	1180	chr12:12879030:+	RPH3A	45790	chr12:113307698:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0128	0.0128	APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,RPH3A->chr12:113008184-113336686:+,rabphilin_3A	HSC3_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000778
CJM_SKIN	ZNF71--GPATCH1	422	104	ZNF71	2250	chr19:57112959:+	GPATCH1	30906	chr19:33608731:+	ONLY_REF_SPLICE	YES	0	6	1	0.99	3.5769	0.8815	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,GPATCH1->G-patch_domain_containing_1,chr19:33571786-33621448:+	CJM_SKIN	0.99	1	4.4584	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	HBEGF--H1F0	251	0	HBEGF	5934	chr5:139713828:-	H1F0	11694	chr22:38202473:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.1275	0	HBEGF->chr5:139712428-139726216:-,heparin_binding_EGF_like_growth_factor,H1F0->H1_histone_family_member_0,chr22:38201114-38203442:+	CJM_SKIN	1	1	2.1275	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	ADAP1--C7orf50	138	6	ADAP1	2012	chr7:994032:-	C7orf50	29696	chr7:1049779:-	ONLY_REF_SPLICE	YES	9	265	0.94	0.35	1.1697	0.0509	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	CJM_SKIN	0.35	0.94	1.2206	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	MICAL3--TOP3B	125	21	MICAL3	2388	chr22:18484159:-	TOP3B	66003	chr22:22330179:-	ONLY_REF_SPLICE	YES	17	15	0.9	0.91	1.0595	0.178	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,TOP3B->chr22:22311397-22337213:-,topoisomerase_(DNA)_III_beta	CJM_SKIN	0.9	0.91	1.2375	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SMARCC1--LCN2	74	0	SMARCC1	30620	chr3:47651556:-	LCN2	39245	chr9:130911762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6272	0	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,LCN2->chr9:130911350-130915734:+,lipocalin_2	CJM_SKIN	1	1	0.6272	TRUE	0	0	0	2	0	TRUE	ACH-000458
CJM_SKIN	PHLPP2--TXNL4B	40	8	PHLPP2	3951	chr16:71748415:-	TXNL4B	36765	chr16:72124685:-	ONLY_REF_SPLICE	YES	12	155	0.8	0.24	0.339	0.0678	PHLPP2->Oncogene{Bushman},PH_domain_and_leucine_rich_repeat_protein_phosphatase_2,chr16:71671738-71758604:-,TXNL4B->chr16:72078188-72128330:-,thioredoxin_like_4B	CJM_SKIN	0.24	0.8	0.4068	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	TXNRD2--AC008132.1	40	4	TXNRD2	13999	chr22:19882930:-	AC008132.1	29134	chr22:18727043:+	ONLY_REF_SPLICE	YES	73	0	0.38	1	0.339	0.0339	TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2,AC008132.1->chr22:18721427-18745407:+	CJM_SKIN	0.38	1	0.3729	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	ZNF507--ZNF383	34	21	ZNF507	5413	chr19:32845863:+	ZNF383	30144	chr19:37733371:+	ONLY_REF_SPLICE	YES	45	8	0.55	0.87	0.2882	0.178	HGNC_GENEFAM,PROTCLUST,ZNF507->chr19:32836500-32878573:+,zinc_finger_protein_507,ZNF383->chr19:37708828-37734828:+,zinc_finger_protein_383	CJM_SKIN	0.55	0.87	0.4662	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	RHBDF2--RAB40B	26	1	RHBDF2	1438	chr17:74497435:-	RAB40B	26381	chr17:80616010:-	ONLY_REF_SPLICE	YES	0	22	1	0.55	0.2204	0.0085	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),RAB40B->RAB40B,_member_RAS_oncogene_family,chr17:80612849-80656604:-	CJM_SKIN	0.55	1	0.2289	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SKI--PRKCZ	20	17	SKI	2041	chr1:2161174:+	PRKCZ	31396	chr1:2066701:+	ONLY_REF_SPLICE	YES	56	63	0.4	0.37	0.1695	0.1441	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.19%,GTEx_FI:{Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Lung=2,Artery_-_Tibial=1,Thyroid=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[43300],SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+,PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta	CJM_SKIN	0.37	0.4	0.3136	TRUE	0	1	0	1	0	TRUE	ACH-000458
CJM_SKIN	EXT1--SAMD12	20	4	EXT1	2769	chr8:119122324:-	SAMD12	31808	chr8:119209971:-	ONLY_REF_SPLICE	YES	336	3	0.07	0.89	0.1695	0.0339	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	CJM_SKIN	0.07	0.89	0.2034	TRUE	0	6	0	5	5	TRUE	ACH-000458
CJM_SKIN	RHBDF2--RAB40B	19	7	RHBDF2	1855	chr17:74497018:-	RAB40B	26381	chr17:80616010:-	ONLY_REF_SPLICE	YES	8	22	0.76	0.54	0.161	0.0593	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),RAB40B->RAB40B,_member_RAS_oncogene_family,chr17:80612849-80656604:-	CJM_SKIN	0.54	0.76	0.2203	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.2	16	9	SLMAP	12737	chr3:57850584:+	RP11-755B10.2	39636	chr3:57640351:+	ONLY_REF_SPLICE	YES	49	0	0.34	1	0.1356	0.0763	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.2->chr3:57614537-57640645:+	CJM_SKIN	0.34	1	0.2119	TRUE	0	1	0	1	1	TRUE	ACH-000458
CJM_SKIN	MICAL3--TOP3B	13	7	MICAL3	1279	chr22:18507047:-	TOP3B	66003	chr22:22330179:-	ONLY_REF_SPLICE	YES	10	15	0.67	0.57	0.1102	0.0593	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,TOP3B->chr22:22311397-22337213:-,topoisomerase_(DNA)_III_beta	CJM_SKIN	0.57	0.67	0.1695	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	MICAL3--TOP3B	9	21	MICAL3	2388	chr22:18484159:-	TOP3B	65623	chr22:22330559:-	ONLY_REF_SPLICE	YES	17	8	0.64	0.79	0.0763	0.178	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,TOP3B->chr22:22311397-22337213:-,topoisomerase_(DNA)_III_beta	CJM_SKIN	0.64	0.79	0.2543	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.2	10	6	SLMAP	12596	chr3:57850443:+	RP11-755B10.2	39636	chr3:57640351:+	ONLY_REF_SPLICE	YES	51	0	0.24	1	0.0848	0.0509	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.2->chr3:57614537-57640645:+	CJM_SKIN	0.24	1	0.1357	TRUE	0	1	0	1	1	TRUE	ACH-000458
CJM_SKIN	PHLPP2--TXNL4B	11	1	PHLPP2	1933	chr16:71757672:-	TXNL4B	36765	chr16:72124685:-	ONLY_REF_SPLICE	YES	19	155	0.39	0.07	0.0932	0.0085	PHLPP2->Oncogene{Bushman},PH_domain_and_leucine_rich_repeat_protein_phosphatase_2,chr16:71671738-71758604:-,TXNL4B->chr16:72078188-72128330:-,thioredoxin_like_4B	CJM_SKIN	0.07	0.39	0.1017	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	EPC2--MBD5	7	0	EPC2	1731	chr2:149402739:+	MBD5	46234	chr2:149260005:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},EPC2->chr2:149402009-149545130:+,enhancer_of_polycomb_homolog_2,MBD5->chr2:148778580-149275805:+,methyl-CpG_binding_domain_protein_5	CJM_SKIN	1	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	ALDOA--LCN2	5	0	ALDOA	7414	chr16:30077186:+	LCN2	15388	chr9:130911731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,LCN2->chr9:130911350-130915734:+,lipocalin_2	CJM_SKIN	1	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	ENO1--H1F0	5	0	ENO1	10869	chr1:8924000:-	H1F0	16865	chr22:38201627:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,H1F0->H1_histone_family_member_0,chr22:38201114-38203442:+	CJM_SKIN	1	1	0.0424	TRUE	0	0	0	4	0	TRUE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.4	5	0	SLMAP	12596	chr3:57850443:+	RP11-755B10.4	40588	chr3:57586470:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0424	0	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.4->chr3:57583442-57586654:+	CJM_SKIN	1	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.2	2	9	SLMAP	13172	chr3:57851019:+	RP11-755B10.2	39636	chr3:57640351:+	ONLY_REF_SPLICE	YES	49	0	0.18	1	0.017	0.0763	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.2->chr3:57614537-57640645:+	CJM_SKIN	0.18	1	0.0933	TRUE	0	1	0	1	1	TRUE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.4	4	0	SLMAP	12737	chr3:57850584:+	RP11-755B10.4	39904	chr3:57585786:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.4->chr3:57583442-57586654:+	CJM_SKIN	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	RHBDF2--RAB40B	3	1	RHBDF2	1438	chr17:74497435:-	RAB40B	25953	chr17:80616438:-	ONLY_REF_SPLICE	YES	0	21	1	0.16	0.0254	0.0085	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),RAB40B->RAB40B,_member_RAS_oncogene_family,chr17:80612849-80656604:-	CJM_SKIN	0.16	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	NTN4--RP11-536G4.2	3	0	NTN4	3897	chr12:96180717:-	RP11-536G4.2	22162	chr12:96189435:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:-:[4193],NTN4->chr12:96051583-96184930:-,netrin_4,RP11-536G4.2->chr12:96189123-96252617:-	CJM_SKIN	1	1	0.0254	TRUE	0	1	0	1	1	TRUE	ACH-000458
CJM_SKIN	RHBDF2--RAB40B	1	8	RHBDF2	1855	chr17:74497018:-	RAB40B	25953	chr17:80616438:-	ONLY_REF_SPLICE	NO	8	21	0.53	0.3	0.0085	0.0678	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),RAB40B->RAB40B,_member_RAS_oncogene_family,chr17:80612849-80656604:-	CJM_SKIN	0.3	0.53	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.4	3	0	SLMAP	13172	chr3:57851019:+	RP11-755B10.4	40588	chr3:57586470:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.4->chr3:57583442-57586654:+	CJM_SKIN	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SND1--ZNF800	3	0	SND1	8159	chr7:127339007:+	ZNF800	45001	chr7:127017383:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx&tcga_normals:1/3694=0.03%,SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,ZNF800->chr7:126986844-127071978:-,zinc_finger_protein_800	CJM_SKIN	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SKI--PRKCZ	1	7	SKI	2041	chr1:2161174:+	PRKCZ	32482	chr1:2075649:+	ONLY_REF_SPLICE	NO	56	71	0.12	0.1	0.0085	0.0593	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.19%,GTEx_FI:{Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Lung=2,Artery_-_Tibial=1,Thyroid=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[43300],SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+,PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta	CJM_SKIN	0.1	0.12	0.0678	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	CSNK2A1--RBCK1	2	0	CSNK2A1	1150	chr20:524316:-	RBCK1	29473	chr20:398170:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[47506],CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+	CJM_SKIN	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	EIF2S3--ACOT9	2	0	EIF2S3	4392	chrX:24078299:+	ACOT9	27222	chrX:23740870:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},EIF2S3->chrX:24072833-24096088:+,eukaryotic_translation_initiation_factor_2_subunit_gamma,ACOT9->acyl-CoA_thioesterase_9,chrX:23720370-23784592:-	CJM_SKIN	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	GPATCH2L--CHMP1A	2	0	GPATCH2L	16680	chr14:76662315:+	CHMP1A	44068	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},GPATCH2L->G-patch_domain_containing_2_like,chr14:76618259-76720685:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CJM_SKIN	1	1	0.017	TRUE	0	1	0	1	0	TRUE	ACH-000458
CJM_SKIN	PRR16--CSNK1G3	2	0	PRR16	1368	chr5:119800340:+	CSNK1G3	13741	chr5:122881111:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	PRR16->chr5:119799973-120023027:+,proline_rich_16,CSNK1G3->casein_kinase_1_gamma_3,chr5:122847793-122952739:+	CJM_SKIN	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.4	2	0	SLMAP	12737	chr3:57850584:+	RP11-755B10.4	40588	chr3:57586470:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.4->chr3:57583442-57586654:+	CJM_SKIN	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	ZNF71--GPATCH1	1	4	ZNF71	2250	chr19:57112959:+	GPATCH1	33199	chr19:33616011:+	ONLY_REF_SPLICE	YES	0	97	1	0.05	0.0085	0.0339	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,GPATCH1->G-patch_domain_containing_1,chr19:33571786-33621448:+	CJM_SKIN	0.05	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	RP11-681L8.1--STPG2	1	2	RP11-681L8.1	2417	chr4:98493799:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0085	0.017	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	CJM_SKIN	1	1	0.0255	TRUE	0	2	0	5	2	TRUE	ACH-000458
CJM_SKIN	RP11-681L8.1--STPG2	1	2	RP11-681L8.1	3504	chr4:98313793:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0085	0.017	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	CJM_SKIN	1	1	0.0255	TRUE	0	10	0	4	10	TRUE	ACH-000458
RMUGS_OVARY	YAP1--RP11-748H22.1	5	8	YAP1	4192	chr11:101985125:+	RP11-748H22.1	22176	chr11:101464411:+	ONLY_REF_SPLICE	YES	143	0	0.08	1	0.0614	0.0983	YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,RP11-748H22.1->chr11:101455026-101465887:+	RMUGS_OVARY	0.08	1	0.1597	TRUE	0	1	0	1	1	TRUE	ACH-000701
RMUGS_OVARY	ZNF827--OTUD4	5	0	ZNF827	12263	chr4:146744574:-	OTUD4	32165	chr4:146092872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0614	0	ZNF827->chr4:146678779-146859787:-,zinc_finger_protein_827,OTUD4->OTU_deubiquitinase_4,chr4:146031990-146101313:-	RMUGS_OVARY	1	1	0.0614	TRUE	0	0	0	1	0	TRUE	ACH-000701
RMUGS_OVARY	TAF15--KRT8	4	0	TAF15	15502	chr17:34171708:+	KRT8	27142	chr12:53298644:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+,KRT8->chr12:53290977-53343738:-,keratin_8	RMUGS_OVARY	1	1	0.0491	TRUE	0	1	0	1	0	TRUE	ACH-000701
RMUGS_OVARY	CHST11--TXNRD1	3	1	CHST11	2941	chr12:104851292:+	TXNRD1	16694	chr12:104645305:+	ONLY_REF_SPLICE	YES	64	3	0.06	0.57	0.0369	0.0123	{Klijn_CCL:Ovary=1},CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	RMUGS_OVARY	0.06	0.57	0.0492	TRUE	0	0	0	2	0	TRUE	ACH-000701
RMUGS_OVARY	CHST11--TXNRD1	2	1	CHST11	2956	chr12:104851307:+	TXNRD1	16694	chr12:104645305:+	ONLY_REF_SPLICE	YES	65	3	0.04	0.5	0.0246	0.0123	{Klijn_CCL:Ovary=1},CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	RMUGS_OVARY	0.04	0.5	0.0369	TRUE	0	0	0	2	0	TRUE	ACH-000701
RMUGS_OVARY	GUSBP1--SPATS2L	1	1	GUSBP1	4568	chr5:21461975:+	SPATS2L	23507	chr2:201194154:+	ONLY_REF_SPLICE	YES	1	12	0.67	0.14	0.0123	0.0123	GUSBP1->chr5:21341942-21589481:+,glucuronidase,_beta_pseudogene_1,SPATS2L->chr2:201170604-201346986:+,spermatogenesis_associated_serine_rich_2_like	RMUGS_OVARY	0.14	0.67	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000701
NMCG1_CENTRAL_NERVOUS_SYSTEM	CDKN2A--MTAP	37	45	CDKN2A	5457	chr9:21974677:-	MTAP	25801	chr9:21861975:+	ONLY_REF_SPLICE	YES	4	137	0.95	0.37	0.4027	0.4898	LOCAL_INVERSION:-:+:[36105],CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.37	0.95	0.8925	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	CDKN2A--MTAP	12	12	CDKN2A	5457	chr9:21974677:-	MTAP	31904	chr9:21931007:+	ONLY_REF_SPLICE	YES	4	15	0.86	0.62	0.1306	0.1306	LOCAL_INVERSION:-:+:[36105],CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.62	0.86	0.2612	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	CDKN2A--RP11-149I2.5	12	3	CDKN2A	5457	chr9:21974677:-	RP11-149I2.5	14932	chr9:21931007:+	INCL_NON_REF_SPLICE	YES	4	0	0.79	1	0.1306	0.0327	LOCAL_INVERSION:-:+:[36679],CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,RP11-149I2.5->chr9:21929456-21931072:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.79	1	0.1633	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	ATG4A--VSIG1	12	1	ATG4A	1169	chrX:107335066:+	VSIG1	24901	chrX:107319307:+	ONLY_REF_SPLICE	YES	22	1	0.37	0.93	0.1306	0.0109	LOCAL_REARRANGEMENT:+:[12484],ATG4A->autophagy_related_4A_cysteine_peptidase,chrX:107334898-107397901:+,VSIG1->V-set_and_immunoglobulin_domain_containing_1,chrX:107288200-107322414:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.37	0.93	0.1415	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	VIM--ACTB	5	0	VIM	2082	chr10:17271339:+	ACTB	15618	chr7:5570234:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0544	TRUE	0	0	0	9	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	HCG4P5--SPP1	4	3	HCG4P5	1523	chr6:29910322:-	SPP1	5078	chr4:88896903:+	INCL_NON_REF_SPLICE	YES	5	0	0.58	1	0.0435	0.0327	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.58	1	0.0762	TRUE	0	1	0	4	1	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	VIM--ACTB	4	0	VIM	2131	chr10:17271388:+	ACTB	15671	chr7:5570181:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0435	TRUE	0	0	0	9	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	PSMB7--VIM-AS1	3	0	PSMB7	10345	chr9:127118825:-	VIM-AS1	15306	chr10:17271415:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7,VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	ATG4A--VSIG1	2	1	ATG4A	1212	chrX:107335109:+	VSIG1	24901	chrX:107319307:+	ONLY_REF_SPLICE	YES	25	1	0.11	0.75	0.0218	0.0109	LOCAL_REARRANGEMENT:+:[12484],ATG4A->autophagy_related_4A_cysteine_peptidase,chrX:107334898-107397901:+,VSIG1->V-set_and_immunoglobulin_domain_containing_1,chrX:107288200-107322414:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.11	0.75	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	FBXL13--NF1	2	0	FBXL13	2698	chr7:102696091:-	NF1	93327	chr17:29685987:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	MKRN1--CTBP1	2	0	MKRN1	1410	chr7:140178960:-	CTBP1	19703	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	MKRN1->chr7:140152840-140179369:-,makorin_ring_finger_protein_1,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	TUBB6--RTN4	2	0	TUBB6	2127	chr18:12308794:+	RTN4	28202	chr2:55214834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	TUBB6->chr18:12307668-12344319:+,tubulin_beta_6_class_V,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	RP11-89K10.1--PCAT1	1	2	RP11-89K10.1	2156	chr8:127601535:+	PCAT1	14438	chr8:127889917:+	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0109	0.0218	RP11-89K10.1->chr8:127570120-127725660:+,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.0327	TRUE	0	4	0	4	4	TRUE	ACH-000200
SNU840_OVARY	UCK1--MED27	94	52	UCK1	1668	chr9:134405988:-	MED27	16207	chr9:134769379:-	INCL_NON_REF_SPLICE	YES	36	43	0.8	0.77	1.1218	0.6206	UCK1->chr9:134399188-134406655:-,uridine-cytidine_kinase_1,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	SNU840_OVARY	0.77	0.8	1.7424	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	ASXL2--WDR43	69	21	ASXL2	1351	chr2:26101035:-	WDR43	33243	chr2:29124853:+	ONLY_REF_SPLICE	YES	21	209	0.81	0.3	0.8234	0.2506	ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	SNU840_OVARY	0.3	0.81	1.074	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	UCK1--MED27	52	37	UCK1	1202	chr9:134406454:-	MED27	16207	chr9:134769379:-	ONLY_REF_SPLICE	YES	36	43	0.71	0.67	0.6206	0.4416	UCK1->chr9:134399188-134406655:-,uridine-cytidine_kinase_1,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	SNU840_OVARY	0.67	0.71	1.0622	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	TBC1D22A--GRAMD4	42	11	TBC1D22A	18901	chr22:47433094:+	GRAMD4	30798	chr22:47033737:+	ONLY_REF_SPLICE	YES	45	8	0.54	0.87	0.5012	0.1313	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SNU840_OVARY	0.54	0.87	0.6325	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MBD5--THUMPD2	31	19	MBD5	1674	chr2:148779253:+	THUMPD2	45298	chr2:39971618:-	ONLY_REF_SPLICE	YES	12	37	0.81	0.57	0.3699	0.2267	MBD5->chr2:148778580-149275805:+,methyl-CpG_binding_domain_protein_5,THUMPD2->THUMP_domain_containing_2,chr2:39963200-40006407:-	SNU840_OVARY	0.57	0.81	0.5966	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	STRN3--HECTD1	29	8	STRN3	4276	chr14:31424826:-	HECTD1	38906	chr14:31619427:-	ONLY_REF_SPLICE	YES	46	81	0.45	0.31	0.3461	0.0955	LOCAL_REARRANGEMENT:-:[73711],STRN3->chr14:31363005-31495607:-,striatin_3,HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-	SNU840_OVARY	0.31	0.45	0.4416	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	STRN3--HECTD1	21	16	STRN3	5358	chr14:31420069:-	HECTD1	38906	chr14:31619427:-	ONLY_REF_SPLICE	YES	44	81	0.46	0.31	0.2506	0.1909	LOCAL_REARRANGEMENT:-:[73711],STRN3->chr14:31363005-31495607:-,striatin_3,HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-	SNU840_OVARY	0.31	0.46	0.4415	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	FAM168A--LRP4-AS1	16	12	FAM168A	1267	chr11:73308968:-	LRP4-AS1	19790	chr11:46868161:+	ONLY_REF_SPLICE	YES	43	0	0.39	1	0.1909	0.1432	FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,LRP4-AS1->LRP4_antisense_RNA_1,chr11:46867963-46895947:+	SNU840_OVARY	0.39	1	0.3341	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	PITPNM2--RILPL2	14	6	PITPNM2	2351	chr12:123594932:-	RILPL2	35342	chr12:123915206:-	ONLY_REF_SPLICE	YES	5	43	0.8	0.32	0.1671	0.0716	PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	SNU840_OVARY	0.32	0.8	0.2387	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	PITPNM2--RILPL2	14	4	PITPNM2	2351	chr12:123594932:-	RILPL2	36494	chr12:123907704:-	ONLY_REF_SPLICE	YES	5	37	0.78	0.33	0.1671	0.0477	PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	SNU840_OVARY	0.33	0.78	0.2148	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MRPL48--PICK1	10	10	MRPL48	12723	chr11:73556021:+	PICK1	23235	chr22:38455241:+	ONLY_REF_SPLICE	YES	40	49	0.33	0.29	0.1193	0.1193	MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,PICK1->Oncogene{Bushman},chr22:38452318-38471708:+,protein_interacting_with_PRKCA_1	SNU840_OVARY	0.29	0.33	0.2386	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	CDK13--LINC00265	9	13	CDK13	7958	chr7:40041630:+	LINC00265	26614	chr7:39807003:+	ONLY_REF_SPLICE	YES	44	3	0.33	0.88	0.1074	0.1551	CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,LINC00265->chr7:39773231-39832691:+,long_intergenic_non-protein_coding_RNA_265	SNU840_OVARY	0.33	0.88	0.2625	TRUE	0	0	0	2	0	TRUE	ACH-000280
SNU840_OVARY	UBA3--FRMD4B	9	8	UBA3	2786	chr3:69126949:-	FRMD4B	20186	chr3:69481912:-	ONLY_REF_SPLICE	YES	227	0	0.07	1	0.1074	0.0955	LOCAL_REARRANGEMENT:-:[89582],UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3,FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-	SNU840_OVARY	0.07	1	0.2029	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	UCK1--MED27	3	21	UCK1	1668	chr9:134405988:-	MED27	17315	chr9:134759486:-	INCL_NON_REF_SPLICE	YES	36	50	0.4	0.32	0.0358	0.2506	UCK1->chr9:134399188-134406655:-,uridine-cytidine_kinase_1,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	SNU840_OVARY	0.32	0.4	0.2864	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	STRA13--ZHX3	7	0	STRA13	2136	chr17:79980702:-	ZHX3	18740	chr20:39833706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0835	0	STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13,ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3	SNU840_OVARY	1	1	0.0835	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	UCK1--MED27	5	8	UCK1	1202	chr9:134406454:-	MED27	18357	chr9:134738527:-	ONLY_REF_SPLICE	YES	36	59	0.27	0.18	0.0597	0.0955	UCK1->chr9:134399188-134406655:-,uridine-cytidine_kinase_1,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	SNU840_OVARY	0.18	0.27	0.1552	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MRPL48--PICK1	4	3	MRPL48	12723	chr11:73556021:+	PICK1	24347	chr22:38461009:+	ONLY_REF_SPLICE	YES	40	49	0.15	0.12	0.0477	0.0358	MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,PICK1->Oncogene{Bushman},chr22:38452318-38471708:+,protein_interacting_with_PRKCA_1	SNU840_OVARY	0.12	0.15	0.0835	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MRPL48--CSNK1E	4	2	MRPL48	12723	chr11:73556021:+	CSNK1E	27774	chr22:38710174:-	ONLY_REF_SPLICE	YES	40	18	0.13	0.25	0.0477	0.0239	MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	SNU840_OVARY	0.13	0.25	0.0716	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	UCK1--MED27	1	14	UCK1	1202	chr9:134406454:-	MED27	17315	chr9:134759486:-	ONLY_REF_SPLICE	NO	36	50	0.29	0.23	0.0119	0.1671	UCK1->chr9:134399188-134406655:-,uridine-cytidine_kinase_1,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	SNU840_OVARY	0.23	0.29	0.179	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	FAM168A--LRP4-AS1	3	5	FAM168A	1267	chr11:73308968:-	LRP4-AS1	21993	chr11:46894625:+	ONLY_REF_SPLICE	YES	43	1	0.16	0.89	0.0358	0.0597	FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,LRP4-AS1->LRP4_antisense_RNA_1,chr11:46867963-46895947:+	SNU840_OVARY	0.16	0.89	0.0955	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	ASXL2--WDR43	1	7	ASXL2	1351	chr2:26101035:-	WDR43	35427	chr2:29129326:+	ONLY_REF_SPLICE	YES	21	184	0.28	0.04	0.0119	0.0835	ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	SNU840_OVARY	0.04	0.28	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	TBC1D22A--GRAMD4	1	7	TBC1D22A	17773	chr22:47393605:+	GRAMD4	30798	chr22:47033737:+	ONLY_REF_SPLICE	YES	51	8	0.14	0.5	0.0119	0.0835	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SNU840_OVARY	0.14	0.5	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	TBC1D22A--GRAMD4	2	3	TBC1D22A	18901	chr22:47433094:+	GRAMD4	31919	chr22:47054084:+	ONLY_REF_SPLICE	YES	45	15	0.1	0.25	0.0239	0.0358	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SNU840_OVARY	0.1	0.25	0.0597	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	GAS6--TFDP1	2	0	GAS6	1499	chr13:114566548:-	TFDP1	22838	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_Transformed_fibroblasts=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	SNU840_OVARY	1	1	0.0239	TRUE	0	1	0	5	0	TRUE	ACH-000280
SNU840_OVARY	RPS6KB1--VMP1	2	0	RPS6KB1	1240	chr17:57970686:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SNU840_OVARY	1	1	0.0239	TRUE	0	2	0	6	2	TRUE	ACH-000280
SNU840_OVARY	STIP1--PPP2R2A	2	0	STIP1	1999	chr11:63953742:+	PPP2R2A	24322	chr8:26211984:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	SNU840_OVARY	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	STRA13--ZHX3	2	0	STRA13	2136	chr17:79980702:-	ZHX3	16465	chr20:39867436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13,ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3	SNU840_OVARY	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	TBC1D22A--GRAMD4	2	0	TBC1D22A	17773	chr22:47393605:+	GRAMD4	31919	chr22:47054084:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SNU840_OVARY	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000280
UBLC1_URINARY_TRACT	RGL1--LINC00184	9	1	RGL1	6007	chr1:183775619:+	LINC00184	29526	chr1:234765355:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1566	0.0174	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,LINC00184->chr1:234765057-234770526:+,long_intergenic_non-protein_coding_RNA_184	UBLC1_URINARY_TRACT	1	1	0.174	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	NUP98--STIM1	6	3	NUP98	22882	chr11:3733794:-	STIM1	59303	chr11:4045103:+	ONLY_REF_SPLICE	YES	13	4	0.41	0.69	0.1044	0.0522	LOCAL_INVERSION:-:+:[56735],NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1	UBLC1_URINARY_TRACT	0.41	0.69	0.1566	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	CTTN--PPFIA1	3	2	CTTN	3602	chr11:70253697:+	PPFIA1	61050	chr11:70224136:+	ONLY_REF_SPLICE	YES	3	10	0.62	0.33	0.0522	0.0348	LOCAL_REARRANGEMENT:+:[14001],CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	UBLC1_URINARY_TRACT	0.33	0.62	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	MBOAT1--CASC15	3	2	MBOAT1	1304	chr6:20212367:-	CASC15	22343	chr6:21668878:+	ONLY_REF_SPLICE	YES	25	16	0.17	0.24	0.0522	0.0348	MBOAT1->chr6:20100935-20212670:-,membrane_bound_O-acyltransferase_domain_containing_1,CASC15->cancer_susceptibility_candidate_15_(non-protein_coding),chr6:21665003-22214734:+	UBLC1_URINARY_TRACT	0.17	0.24	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	CAPZA1--EIF4B	3	0	CAPZA1	9876	chr1:113209759:+	EIF4B	32671	chr12:53435792:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	CAPZA1->capping_actin_protein_of_muscle_Z-line_alpha_subunit_1,chr1:113161795-113214241:+,EIF4B->chr12:53399942-53435993:+,eukaryotic_translation_initiation_factor_4B	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	CD63--SMAD3	3	0	CD63	3553	chr12:56120939:-	SMAD3	29391	chr15:67485157:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	CD63->CD63_molecule,chr12:56119107-56123491:-,SMAD3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_3,chr15:67356101-67487533:+	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	GALNT2--RPL19	3	0	GALNT2	20531	chr1:230415441:+	RPL19	26402	chr17:37356977:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2,RPL19->chr17:37356536-37360980:+,ribosomal_protein_L19	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	MYO5B--RPL17	3	0	MYO5B	42713	chr18:47365514:-	RPL17	54650	chr18:47017954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	MYO5B->chr18:47349183-47721463:-,myosin_VB,RPL17->chr18:47014851-47018906:-,ribosomal_protein_L17	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	PRPF4B--NAP1L1	3	0	PRPF4B	3780	chr6:4032989:+	NAP1L1	32124	chr12:76454059:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	PRPF4B->Oncogene{Bushman},chr6:4021501-4065217:+,pre-mRNA_processing_factor_4B,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	RPS6KB1--LASP1	3	0	RPS6KB1	1240	chr17:57970686:+	LASP1	32896	chr17:37070578:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	SCYL2--RPS27A	3	0	SCYL2	1257	chr12:100661174:+	RPS27A	30466	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	SCYL2->SCY1_like_pseudokinase_2,chr12:100660918-100735502:+,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	SPECC1L--MALAT1	3	0	SPECC1L	19567	chr22:24807671:+	MALAT1	30570	chr11:65268024:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,MALAT1->chr11:65265233-65273940:+,metastasis_associated_lung_adenocarcinoma_transcript_1_(non-protein_coding)	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	TMEM5--UBR4	3	0	TMEM5	4639	chr12:64178852:+	UBR4	27854	chr1:19505714:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	TMEM5->chr12:64173583-64203338:+,transmembrane_protein_5,UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	TMEM97--B2M	3	0	TMEM97	6583	chr17:26655695:+	B2M	14668	chr15:45010233:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	TMEM97->chr17:26646121-26655707:+,transmembrane_protein_97,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	ABR--SMYD4	2	1	ABR	22312	chr17:970317:-	SMYD4	52509	chr17:1690898:-	ONLY_REF_SPLICE	YES	4	5	0.43	0.38	0.0348	0.0174	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-	UBLC1_URINARY_TRACT	0.38	0.43	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	PLEKHA2--BOD1L1	2	1	PLEKHA2	4056	chr8:38793568:+	BOD1L1	29582	chr4:13615285:-	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0348	0.0174	PLEKHA2->Oncogene{Bushman},chr8:38758753-38831428:+,pleckstrin_homology_domain_containing_A2,BOD1L1->biorientation_of_chromosomes_in_cell_division_1_like_1,chr4:13570362-13629347:-	UBLC1_URINARY_TRACT	0.33	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	BRIX1--DROSHA	2	0	BRIX1	6563	chr5:34922873:+	DROSHA	50803	chr5:31407052:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	BRIX1->BRX1,_biogenesis_of_ribosomes,chr5:34915481-34926101:+,DROSHA->chr5:31400604-31532303:-,drosha_ribonuclease_III	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	CASC15--E2F3	2	0	CASC15	10325	chr6:21909834:+	E2F3	37651	chr6:20480077:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	CASC15->cancer_susceptibility_candidate_15_(non-protein_coding),chr6:21665003-22214734:+,E2F3->E2F_transcription_factor_3,Oncogene{Bushman},chr6:20402398-20493941:+	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	CDH2--VMP1	2	0	CDH2	21509	chr18:25543321:-	VMP1	42108	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	CDH2->cadherin_2,chr18:25530930-25757410:-,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	DDX52--CTB-58E17.9	2	0	DDX52	11098	chr17:35986834:-	CTB-58E17.9	26835	chr17:36875520:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	DDX52->DEAD-box_helicase_52,chr17:35969787-36003493:-,CTB-58E17.9->chr17:36871581-36876525:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	FNBP1L--TIMP2	2	0	FNBP1L	2291	chr1:93965140:+	TIMP2	29000	chr17:76853728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	FNBP1L->chr1:93913688-94020218:+,formin_binding_protein_1_like,TIMP2->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_2,chr17:76849059-76921469:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	FRYL--METTL23	2	0	FRYL	4609	chr4:48686690:-	METTL23	86215	chr17:74729375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,METTL23->chr17:74722912-74730018:+,methyltransferase_like_23	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	HADHB--EMC9	2	0	HADHB	16296	chr2:26507825:+	EMC9	23261	chr14:24608998:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	HADHB->chr2:26466038-26513336:+,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_beta_subunit,EMC9->ER_membrane_protein_complex_subunit_9,chr14:24608174-24610797:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	KIAA0020--MLLT4	2	0	KIAA0020	5321	chr9:2833357:-	MLLT4	61376	chr6:168366437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	KIAA0020->chr9:2720469-2844241:-,MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	MANEA--SF3B1	2	0	MANEA	2678	chr6:96034859:+	SF3B1	19704	chr2:198283312:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	MANEA->chr6:96025419-96057333:+,mannosidase_endo-alpha,SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	MKLN1-AS1--RPS6KC1	2	0	MKLN1-AS1	13605	chr7:130630479:-	RPS6KC1	33842	chr1:213415912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	MKLN1-AS1->chr7:130626519-130794935:-,RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	MRPS9--BMPR2	2	0	MRPS9	1245	chr2:105654685:+	BMPR2	27720	chr2:203407034:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	MRPS9->chr2:105654441-105716418:+,mitochondrial_ribosomal_protein_S9,BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	NCK1--MSL2	2	0	NCK1	1112	chr3:136581161:+	MSL2	18208	chr3:135871580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Spleen=1},NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	2	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	RBM33--SEC61G	2	0	RBM33	5993	chr7:155473602:+	SEC61G	34438	chr7:54827027:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	RBM33->RNA_binding_motif_protein_33,chr7:155437145-155574179:+,SEC61G->Sec61_translocon_gamma_subunit,chr7:54819943-54827667:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	RGL1--RP5-855F14.2	2	0	RGL1	6007	chr1:183775619:+	RP5-855F14.2	30353	chr1:234705570:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,RP5-855F14.2->chr1:234701044-234705834:+	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	RNF139--DEGS1	2	0	RNF139	1553	chr8:125487531:+	DEGS1	11554	chr1:224377279:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	RNF139->Oncogene{Bushman},chr8:125486979-125500155:+,ring_finger_protein_139,DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	RP11-152F13.7--CFI	2	0	RP11-152F13.7	1307	chr15:82945079:+	CFI	13913	chr4:110682848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	RP11-152F13.7->chr15:82944773-82974312:+,CFI->chr4:110661852-110723335:-,complement_factor_I	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	SPATA6--RP4-601K24.1	2	0	SPATA6	6677	chr1:48877136:-	RP4-601K24.1	30948	chr1:83462398:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,RP4-601K24.1->chr1:83368866-83632498:+	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	UBR4--FAU	2	0	UBR4	41004	chr1:19474487:-	FAU	97427	chr11:64889116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4,FAU->Finkel-Biskis-Reilly_murine_sarcoma_virus_(FBR-MuSV)_ubiquitously_expressed,chr11:64888100-64889945:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	WDR59--R3HDM2	2	0	WDR59	3538	chr16:75018862:-	R3HDM2	40676	chr12:57789601:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	WHSC1--PTP4A2	2	0	WHSC1	15609	chr4:1936989:+	PTP4A2	57129	chr1:32381588:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	ZCCHC7--B4GALT1	2	0	ZCCHC7	3765	chr9:37126939:+	B4GALT1	23692	chr9:33135422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
MDAMB134VI_BREAST	ANK1--ZMAT4	124	51	ANK1	36511	chr8:41542062:-	ZMAT4	58937	chr8:40554920:-	ONLY_REF_SPLICE	YES	12	9	0.94	0.95	1.7878	0.7353	ANK1->ankyrin_1,chr8:41510739-41754280:-,ZMAT4->chr8:40388109-40755352:-,zinc_finger_matrin-type_4	MDAMB134VI_BREAST	0.94	0.95	2.5231	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	PROSC--OR7E11P	98	47	PROSC	1166	chr8:37620276:+	OR7E11P	12394	chr11:67504032:-	INCL_NON_REF_SPLICE	YES	324	0	0.31	1	1.4129	0.6776	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),OR7E11P->chr11:67503079-67504030:-,olfactory_receptor_family_7_subfamily_E_member_11_pseudogene	MDAMB134VI_BREAST	0.31	1	2.0905	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	PROSC--OR7E11P	57	38	PROSC	1166	chr8:37620276:+	OR7E11P	12469	chr11:67503957:-	INCL_NON_REF_SPLICE	YES	324	0	0.23	1	0.8218	0.5479	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),OR7E11P->chr11:67503079-67504030:-,olfactory_receptor_family_7_subfamily_E_member_11_pseudogene	MDAMB134VI_BREAST	0.23	1	1.3697	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	DMTN--AP002387.1	25	24	DMTN	9799	chr8:21925193:+	AP002387.1	30558	chr11:71105004:-	ONLY_REF_SPLICE	YES	13	0	0.79	1	0.3604	0.346	DMTN->chr8:21906506-21940038:+,dematin_actin_binding_protein,AP002387.1->chr11:71093647-71134469:-	MDAMB134VI_BREAST	0.79	1	0.7064	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	KCTD21-AS1--PLEKHB1	17	10	KCTD21-AS1	5112	chr11:77860139:+	PLEKHB1	21485	chr11:73371798:+	ONLY_REF_SPLICE	YES	3	18	0.9	0.6	0.2451	0.1442	KCTD21-AS1->KCTD21_antisense_RNA_1,chr11:77850817-77886369:+,PLEKHB1->Oncogene{Bushman},chr11:73357223-73373864:+,pleckstrin_homology_domain_containing_B1	MDAMB134VI_BREAST	0.6	0.9	0.3893	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	SHANK2--KDM2A	11	2	SHANK2	29853	chr11:70644548:-	KDM2A	67810	chr11:66947550:+	ONLY_REF_SPLICE	YES	20	17	0.39	0.43	0.1586	0.0288	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	MDAMB134VI_BREAST	0.39	0.43	0.1874	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	KCTD21-AS1--PLEKHB1	7	5	KCTD21-AS1	2609	chr11:77852748:+	PLEKHB1	21485	chr11:73371798:+	ONLY_REF_SPLICE	YES	72	18	0.14	0.4	0.1009	0.0721	KCTD21-AS1->KCTD21_antisense_RNA_1,chr11:77850817-77886369:+,PLEKHB1->Oncogene{Bushman},chr11:73357223-73373864:+,pleckstrin_homology_domain_containing_B1	MDAMB134VI_BREAST	0.14	0.4	0.173	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	EFR3A--ANK1	5	4	EFR3A	7410	chr8:132962337:+	ANK1	36268	chr8:41615655:-	ONLY_REF_SPLICE	YES	4	12	0.69	0.43	0.0721	0.0577	{Klijn_CCL:Breast=1},EFR3A->EFR3_homolog_A,chr8:132916335-133025889:+,ANK1->ankyrin_1,chr8:41510739-41754280:-	MDAMB134VI_BREAST	0.43	0.69	0.1298	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	CLNS1A--B3GNT6	3	3	CLNS1A	14074	chr11:77322360:-	B3GNT6	22528	chr11:76750596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0.0433	CLNS1A->chloride_nucleotide-sensitive_channel_1A,chr11:77225981-77348850:-,B3GNT6->Oncogene{Bushman},UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_6,chr11:76745385-76753096:+	MDAMB134VI_BREAST	1	1	0.0866	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	ACTR3C--RP11-728K20.1	3	1	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	6	0	0.4	1	0.0433	0.0144	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	MDAMB134VI_BREAST	0.4	1	0.0577	TRUE	0	5	0	16	1	TRUE	ACH-000044
MDAMB134VI_BREAST	EFR3A--ANK1	2	2	EFR3A	6288	chr8:132958880:+	ANK1	36268	chr8:41615655:-	ONLY_REF_SPLICE	YES	5	12	0.44	0.25	0.0288	0.0288	{Klijn_CCL:Breast=1},EFR3A->EFR3_homolog_A,chr8:132916335-133025889:+,ANK1->ankyrin_1,chr8:41510739-41754280:-	MDAMB134VI_BREAST	0.25	0.44	0.0576	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	ACTR3C--RP11-728K20.1	2	0	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	18809	chr7:149589487:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	MDAMB134VI_BREAST	1	1	0.0288	TRUE	0	3	0	4	2	TRUE	ACH-000044
MDAMB134VI_BREAST	DANCR--PHF14	2	0	DANCR	1530	chr4:53579126:+	PHF14	31809	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	MDAMB134VI_BREAST	1	1	0.0288	TRUE	0	5	0	5	1	TRUE	ACH-000044
MDAMB134VI_BREAST	RBM23--MRPL52	2	0	RBM23	9267	chr14:23375404:-	MRPL52	21923	chr14:23303381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_INVERSION:-:+:[65608],RBM23->RNA_binding_motif_protein_23,chr14:23369854-23388393:-,MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	MDAMB134VI_BREAST	1	1	0.0288	TRUE	0	3	0	2	1	TRUE	ACH-000044
SNU216_STOMACH	KANSL1--GAST	1481	355	KANSL1	4754	chr17:44270189:-	GAST	32874	chr17:39871684:+	ONLY_REF_SPLICE	YES	12	0	0.99	1	14.611	3.5023	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.99	1	18.1133	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	MSH5--AIF1	876	347	MSH5	3633	chr6:31710947:+	AIF1	24171	chr6:31584121:+	ONLY_REF_SPLICE	YES	16	0	0.99	1	8.6423	3.4234	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,AIF1->allograft_inflammatory_factor_1,chr6:31582961-31584798:+	SNU216_STOMACH	0.99	1	12.0657	TRUE	0	0	0	2	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	563	190	KANSL1	2697	chr17:44301037:-	GAST	32874	chr17:39871684:+	ONLY_REF_SPLICE	YES	9	0	0.99	1	5.5543	1.8745	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.99	1	7.4288	TRUE	0	1	0	1	1	TRUE	ACH-000466
SNU216_STOMACH	KLK5--KLK6	343	2	KLK5	3986	chr19:51451896:-	KLK6	14361	chr19:51462572:-	ONLY_REF_SPLICE	YES	1737	2272	0.17	0.13	3.3839	0.0197	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[5538],KLK5->Oncogene{Bushman},chr19:51446559-51456349:-,kallikrein_related_peptidase_5,KLK6->Oncogene{Bushman},chr19:51461887-51472929:-,kallikrein_related_peptidase_6	SNU216_STOMACH	0.13	0.17	3.4036	TRUE	0	0	0	2	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	137	412	KANSL1	5158	chr17:44269785:-	GAST	32874	chr17:39871684:+	ONLY_REF_SPLICE	YES	16	0	0.97	1	1.3516	4.0646	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.97	1	5.4162	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	148	45	KANSL1	2697	chr17:44301037:-	GAST	33220	chr17:39872030:+	ONLY_REF_SPLICE	YES	9	293	0.96	0.4	1.4601	0.444	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.4	0.96	1.9041	TRUE	0	1	0	1	1	TRUE	ACH-000466
SNU216_STOMACH	CDC42SE2--LYRM7	133	30	CDC42SE2	6369	chr5:130651837:+	LYRM7	21362	chr5:130515788:+	ONLY_REF_SPLICE	YES	104	1	0.61	0.99	1.3121	0.296	LOCAL_REARRANGEMENT:+:[40067],CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,LYRM7->LYR_motif_containing_7,chr5:130506503-130541119:+	SNU216_STOMACH	0.61	0.99	1.6081	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	MSH5--AIF1	27	374	MSH5	3747	chr6:31711061:+	AIF1	24020	chr6:31583970:+	INCL_NON_REF_SPLICE	YES	13	1	0.97	1	0.2664	3.6897	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,AIF1->allograft_inflammatory_factor_1,chr6:31582961-31584798:+	SNU216_STOMACH	0.97	1	3.9561	TRUE	0	0	0	2	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	8	357	KANSL1	4754	chr17:44270189:-	GAST	32855	chr17:39871665:+	INCL_NON_REF_SPLICE	YES	12	0	0.97	1	0.0789	3.522	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.97	1	3.6009	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	DNAJC8--C2orf42	69	17	DNAJC8	9689	chr1:28530258:-	C2orf42	23693	chr2:70396793:-	ONLY_REF_SPLICE	YES	242	8	0.26	0.91	0.6807	0.1677	DNAJC8->DnaJ_heat_shock_protein_family_(Hsp40)_member_C8,chr1:28525967-28559536:-,C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42	SNU216_STOMACH	0.26	0.91	0.8484	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	21	203	KANSL1	3827	chr17:44271116:-	GAST	32874	chr17:39871684:+	ONLY_REF_SPLICE	YES	9	0	0.96	1	0.2072	2.0027	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.96	1	2.2099	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	48	62	KANSL1	4754	chr17:44270189:-	GAST	33220	chr17:39872030:+	ONLY_REF_SPLICE	YES	12	293	0.9	0.27	0.4735	0.6117	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.27	0.9	1.0852	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	LRRC37A3--LASP1	44	31	LRRC37A3	12602	chr17:62882204:-	LASP1	34334	chr17:37071296:+	ONLY_REF_SPLICE	YES	13	663	0.85	0.1	0.4341	0.3058	LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3,LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+	SNU216_STOMACH	0.1	0.85	0.7399	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	LASP1--C17orf75	38	2	LASP1	7268	chr17:37054772:+	C17orf75	29266	chr17:30651793:-	ONLY_REF_SPLICE	YES	527	0	0.07	1	0.3749	0.0197	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,C17orf75->chr17:30651584-30677042:-,chromosome_17_open_reading_frame_75	SNU216_STOMACH	0.07	1	0.3946	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	MSH5--AIF1	2	117	MSH5	2339	chr6:31709063:+	AIF1	24171	chr6:31584121:+	ONLY_REF_SPLICE	YES	209	0	0.36	1	0.0197	1.1543	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,AIF1->allograft_inflammatory_factor_1,chr6:31582961-31584798:+	SNU216_STOMACH	0.36	1	1.174	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	9	69	KANSL1	5158	chr17:44269785:-	GAST	33220	chr17:39872030:+	ONLY_REF_SPLICE	YES	16	293	0.83	0.21	0.0888	0.6807	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.21	0.83	0.7695	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	ABCC1--FAM195A	15	20	ABCC1	16353	chr16:16165586:+	FAM195A	44368	chr16:692120:+	ONLY_REF_SPLICE	YES	63	37	0.36	0.49	0.148	0.1973	{Klijn_CCL:Stomach=1},ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,FAM195A->chr16:691813-698474:+	SNU216_STOMACH	0.36	0.49	0.3453	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	ABCC1--FAM195A	12	10	ABCC1	16353	chr16:16165586:+	FAM195A	46443	chr16:697417:+	ONLY_REF_SPLICE	YES	63	132	0.26	0.14	0.1184	0.0987	{Klijn_CCL:Stomach=1},ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,FAM195A->chr16:691813-698474:+	SNU216_STOMACH	0.14	0.26	0.2171	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	ABCC1--FAM195A	10	13	ABCC1	16353	chr16:16165586:+	FAM195A	45498	chr16:696472:+	ONLY_REF_SPLICE	YES	63	99	0.27	0.19	0.0987	0.1283	{Klijn_CCL:Stomach=1},ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,FAM195A->chr16:691813-698474:+	SNU216_STOMACH	0.19	0.27	0.227	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	CHCHD3--KHDRBS2	13	1	CHCHD3	7933	chr7:132659929:-	KHDRBS2	25481	chr6:62611276:-	ONLY_REF_SPLICE	YES	140	0	0.09	1	0.1283	0.0099	CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,KHDRBS2->KH_domain_containing,_RNA_binding,_signal_transduction_associated_2,chr6:62389865-62996132:-	SNU216_STOMACH	0.09	1	0.1382	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	YEATS2--VPS8	10	3	YEATS2	8870	chr3:183454617:+	VPS8	76769	chr3:184631307:+	ONLY_REF_SPLICE	YES	30	15	0.3	0.46	0.0987	0.0296	GTEx&tcga_normals:1/3694=0.03%,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+,VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+	SNU216_STOMACH	0.3	0.46	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	CDC42SE2--LYRM7	9	4	CDC42SE2	6369	chr5:130651837:+	LYRM7	24588	chr5:130535224:+	ONLY_REF_SPLICE	YES	104	47	0.11	0.22	0.0888	0.0395	LOCAL_REARRANGEMENT:+:[40067],CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,LYRM7->LYR_motif_containing_7,chr5:130506503-130541119:+	SNU216_STOMACH	0.11	0.22	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	CDC42SE2--LYRM7	8	3	CDC42SE2	5200	chr5:130599859:+	LYRM7	21362	chr5:130515788:+	ONLY_REF_SPLICE	YES	15	1	0.42	0.92	0.0789	0.0296	LOCAL_REARRANGEMENT:+:[40067],CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,LYRM7->LYR_motif_containing_7,chr5:130506503-130541119:+	SNU216_STOMACH	0.42	0.92	0.1085	TRUE	0	1	0	1	1	TRUE	ACH-000466
SNU216_STOMACH	ARL17A--IKZF3	7	6	ARL17A	3398	chr17:44648125:-	IKZF3	15999	chr17:37988404:-	ONLY_REF_SPLICE	YES	56	0	0.19	1	0.0691	0.0592	ARL17A->ADP_ribosylation_factor_like_GTPase_17A,chr17:44594068-44657088:-,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	SNU216_STOMACH	0.19	1	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	BCAS3--ITGB3	4	4	BCAS3	37888	chr17:59161925:+	ITGB3	60624	chr17:45351785:+	ONLY_REF_SPLICE	YES	20	0	0.29	1	0.0395	0.0395	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,ITGB3->chr17:45331212-45421658:+,chr17:45331263-45421658:+,integrin_subunit_beta_3	SNU216_STOMACH	0.29	1	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	CDC42SE2--LYRM7	1	12	CDC42SE2	6369	chr5:130651837:+	LYRM7	22435	chr5:130517922:+	ONLY_REF_SPLICE	YES	104	20	0.11	0.39	0.0099	0.1184	LOCAL_REARRANGEMENT:+:[40067],CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,LYRM7->LYR_motif_containing_7,chr5:130506503-130541119:+	SNU216_STOMACH	0.11	0.39	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	LASP1--SRCIN1	4	0	LASP1	7268	chr17:37054772:+	SRCIN1	43990	chr17:36689666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	SNU216_STOMACH	1	1	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	YEATS2--VPS8	2	2	YEATS2	7758	chr3:183446639:+	VPS8	76769	chr3:184631307:+	ONLY_REF_SPLICE	NO	25	15	0.14	0.21	0.0197	0.0197	GTEx&tcga_normals:1/3694=0.03%,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+,VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+	SNU216_STOMACH	0.14	0.21	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	EDF1--ASPSCR1	2	0	EDF1	3072	chr9:139757358:-	ASPSCR1	28606	chr17:79974352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+	SNU216_STOMACH	1	1	0.0197	TRUE	0	1	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	IPO7--CTC-228N24.3	2	0	IPO7	13536	chr11:9446809:+	CTC-228N24.3	35858	chr5:127396936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	IPO7->chr11:9406169-9469673:+,importin_7,CTC-228N24.3->chr5:127276118-127418864:-	SNU216_STOMACH	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	NCOA3--GNAS	2	0	NCOA3	1163	chr20:46130763:+	GNAS	45368	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU216_STOMACH	1	1	0.0197	TRUE	0	1	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	PAFAH1B3--C19orf81	2	0	PAFAH1B3	3915	chr19:42804122:-	C19orf81	10952	chr19:51161246:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3,C19orf81->chr19:51152702-51162567:+,chromosome_19_open_reading_frame_81	SNU216_STOMACH	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	RCC1--EEF1D	2	0	RCC1	2920	chr1:28835417:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SNU216_STOMACH	1	1	0.0197	TRUE	1	10	0	18	0	TRUE	ACH-000466
SNU216_STOMACH	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SNU216_STOMACH	1	1	0.0197	TRUE	1	10	0	18	0	TRUE	ACH-000466
2313287_STOMACH	ABI1--WAC	2	0	ABI1	1341	chr10:27149676:-	WAC	25505	chr10:28872328:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,WAC->WW_domain_containing_adaptor_with_coiled-coil,chr10:28821422-28912041:+	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	C17orf76-AS1--PHF14	2	0	C17orf76-AS1	1593	chr17:16342728:+	PHF14	37718	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	C17orf76-AS1->chr17:16342136-16381992:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	5	0	TRUE	ACH-000948
2313287_STOMACH	DBR1--TBC1D15	2	0	DBR1	3529	chr3:137890475:-	TBC1D15	31460	chr12:72307606:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	DBR1->chr3:137879854-137893791:-,debranching_RNA_lariats_1,TBC1D15->TBC1_domain_family_member_15,chr12:72233487-72320629:+	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	DNAJC24--RCC1	2	0	DNAJC24	2020	chr11:31392406:+	RCC1	22508	chr1:28834640:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	FAM222B--SMYD4	2	0	FAM222B	2441	chr17:27169700:-	SMYD4	24694	chr17:1704318:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	GAK--CIRBP	2	0	GAK	8218	chr4:891821:-	CIRBP	48916	chr19:1270927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase,CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	ILF3--DDX42	2	0	ILF3	10372	chr19:10792005:+	DDX42	27037	chr17:61864394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	MSI2--RP11-159D12.2	2	0	MSI2	5660	chr17:55339553:+	RP11-159D12.2	54335	chr17:56067157:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,RP11-159D12.2->chr17:56066400-56072211:-	2313287_STOMACH	1	1	0.0271	TRUE	0	1	0	1	0	TRUE	ACH-000948
2313287_STOMACH	MYO1D--CHD1L	2	0	MYO1D	31205	chr17:30932105:-	CHD1L	44488	chr1:146727468:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	MYO1D->chr17:30819540-31204195:-,myosin_ID,CHD1L->chr1:146714291-146767443:+,chromodomain_helicase_DNA_binding_protein_1-like	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	NDUFV2--MYL12B	2	0	NDUFV2	1168	chr18:9102795:+	MYL12B	16096	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	OGT--DTL	2	0	OGT	1254	chrX:70753186:+	DTL	32738	chr1:212236226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+,DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	PEX14--MRPS5	2	0	PEX14	3457	chr1:10555378:+	MRPS5	33437	chr2:95756267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14,MRPS5->chr2:95752952-95815179:-,mitochondrial_ribosomal_protein_S5	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	PRDX3--CCT2	2	0	PRDX3	5352	chr10:120931894:-	CCT2	16790	chr12:69983265:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	SCAF8--ANXA2	2	0	SCAF8	1606	chr6:155055064:+	ANXA2	43507	chr15:60674640:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	SCAF8->SR-related_CTD_associated_factor_8,chr6:155054459-155155192:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	SNHG1--DNAJC1	2	0	SNHG1	1491	chr11:62622896:-	DNAJC1	18838	chr10:22055238:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	SNHG1->chr11:62619460-62623386:-,small_nucleolar_RNA_host_gene_1,DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	SNHG5--ZNF202	2	0	SNHG5	1939	chr6:86387513:-	ZNF202	14407	chr11:123600533:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,ZNF202->chr11:123594885-123612383:-,zinc_finger_protein_202	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
CHAGOK1_LUNG	RPS19--POU2F2	425	0	RPS19	1372	chr19:42364359:+	POU2F2	17092	chr19:42626728:-	ONLY_REF_SPLICE	YES	0	0	1	1	3.5945	0	RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19,POU2F2->Oncogene{Bushman},POU_class_2_homeobox_2,chr19:42590263-42700737:-	CHAGOK1_LUNG	1	1	3.5945	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	COPS2--CLDN1	315	6	COPS2	1137	chr15:49447722:-	CLDN1	20862	chr3:190030825:-	ONLY_REF_SPLICE	YES	1	134	1	0.71	2.6642	0.0507	COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-,CLDN1->chr3:190023490-190040264:-,claudin_1	CHAGOK1_LUNG	0.71	1	2.7149	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PRKCI--RPL22	155	92	PRKCI	4669	chr3:169981217:+	RPL22	31682	chr1:6257733:-	INCL_NON_REF_SPLICE	YES	89	695	0.74	0.26	1.3109	0.7781	PRKCI->ArcherDX_panel,FoundationOne_panel,chr3:169940153-170023769:+,protein_kinase_C_iota,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	CHAGOK1_LUNG	0.26	0.74	2.089	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	TTLL7--ERI3	157	49	TTLL7	1220	chr1:84464614:-	ERI3	53671	chr1:44687312:-	ONLY_REF_SPLICE	YES	6	112	0.97	0.65	1.3279	0.4144	TTLL7->chr1:84330711-84464833:-,tubulin_tyrosine_ligase_like_7,ERI3->ERI1_exoribonuclease_family_member_3,chr1:44686742-44820932:-	CHAGOK1_LUNG	0.65	0.97	1.7423	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MIER1--RP11-417J8.1	143	85	MIER1	8048	chr1:67411978:+	RP11-417J8.1	28631	chr1:142557333:+	ONLY_REF_SPLICE	YES	35	0	0.87	1	1.2095	0.7189	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,RP11-417J8.1->chr1:142553293-142559170:+	CHAGOK1_LUNG	0.87	1	1.9284	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	SKIL--MECOM	119	50	SKIL	4752	chr3:170079217:+	MECOM	27790	chr3:168861620:-	ONLY_REF_SPLICE	YES	55	8	0.75	0.95	1.0065	0.4229	{Klijn_CCL:Lung=1},SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+,MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-	CHAGOK1_LUNG	0.75	0.95	1.4294	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RP11-488P3.1--GLMN	116	30	RP11-488P3.1	1248	chr1:94240753:-	GLMN	9256	chr1:92757094:-	ONLY_REF_SPLICE	YES	9	20	0.94	0.88	0.9811	0.2537	RP11-488P3.1->chr1:94218480-94241000:-,GLMN->Oncogene{Bushman},chr1:92711959-92764544:-,glomulin,_FKBP_associated_protein	CHAGOK1_LUNG	0.88	0.94	1.2348	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	CCPG1--SHC4	107	5	CCPG1	1290	chr15:55700419:-	SHC4	28044	chr15:49183008:-	ONLY_REF_SPLICE	YES	19	0	0.85	1	0.905	0.0423	CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	CHAGOK1_LUNG	0.85	1	0.9473	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	TCF12--RP11-548M13.1	79	39	TCF12	3439	chr15:57213296:+	RP11-548M13.1	45270	chr15:55384055:+	ONLY_REF_SPLICE	YES	36	0	0.77	1	0.6682	0.3299	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,RP11-548M13.1->chr15:55348945-55384371:+	CHAGOK1_LUNG	0.77	1	0.9981	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MIER1--RP11-417J8.1	60	101	MIER1	8048	chr1:67411978:+	RP11-417J8.1	27427	chr1:142553293:+	ONLY_REF_SPLICE	YES	35	0	0.82	1	0.5075	0.8542	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,RP11-417J8.1->chr1:142553293-142559170:+	CHAGOK1_LUNG	0.82	1	1.3617	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	APTX--NOL6	63	34	APTX	11552	chr9:32984629:-	NOL6	27080	chr9:33464974:-	ONLY_REF_SPLICE	YES	27	27	0.78	0.78	0.5328	0.2876	{Klijn_CCL:Lung=1},APTX->aprataxin,chr9:32972604-33025166:-,NOL6->chr9:33461439-33473928:-,nucleolar_protein_6	CHAGOK1_LUNG	0.78	0.78	0.8204	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	BRWD3--HMGN5	69	10	BRWD3	20519	chrX:79971656:-	HMGN5	54215	chrX:80375316:-	ONLY_REF_SPLICE	YES	5	20	0.94	0.8	0.5836	0.0846	{Klijn_CCL:Lung=1},BRWD3->Oncogene{Bushman},bromodomain_and_WD_repeat_domain_containing_3,chrX:79926353-80065187:-,HMGN5->chrX:80369200-80457441:-,high_mobility_group_nucleosome_binding_domain_5	CHAGOK1_LUNG	0.8	0.94	0.6682	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MIER1--RP11-417J8.1	40	101	MIER1	8048	chr1:67411978:+	RP11-417J8.1	27390	chr1:142553256:+	INCL_NON_REF_SPLICE	YES	35	0	0.8	1	0.3383	0.8542	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,RP11-417J8.1->chr1:142553293-142559170:+	CHAGOK1_LUNG	0.8	1	1.1925	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	NEDD4--CLDN1	57	0	NEDD4	1236	chr15:56285709:-	CLDN1	41475	chr3:190030825:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4821	0	NEDD4->chr15:56119120-56285944:-,neural_precursor_cell_expressed,_developmentally_down-regulated_4,_E3_ubiquitin_protein_ligase,CLDN1->chr3:190023490-190040264:-,claudin_1	CHAGOK1_LUNG	1	1	0.4821	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MIER1--RP11-417J8.1	23	63	MIER1	8048	chr1:67411978:+	RP11-417J8.1	29669	chr1:142558448:+	ONLY_REF_SPLICE	YES	35	8	0.71	0.91	0.1945	0.5328	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,RP11-417J8.1->chr1:142553293-142559170:+	CHAGOK1_LUNG	0.71	0.91	0.7273	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PRKACB--HIVEP3	36	3	PRKACB	1310	chr1:84544054:+	HIVEP3	32163	chr1:42314760:-	ONLY_REF_SPLICE	YES	17	0	0.7	1	0.3045	0.0254	PRKACB->chr1:84543745-84704181:+,protein_kinase_cAMP-activated_catalytic_subunit_beta,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	CHAGOK1_LUNG	0.7	1	0.3299	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MIER1--RP11-417J8.1	8	104	MIER1	8915	chr1:67412845:+	RP11-417J8.1	27427	chr1:142553293:+	INCL_NON_REF_SPLICE	YES	29	0	0.79	1	0.0677	0.8796	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,RP11-417J8.1->chr1:142553293-142559170:+	CHAGOK1_LUNG	0.79	1	0.9473	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RP11-532F12.5--INO80	32	7	RP11-532F12.5	5142	chr15:41128316:-	INO80	41060	chr15:41279391:-	INCL_NON_REF_SPLICE	YES	7	39	0.85	0.5	0.2706	0.0592	RP11-532F12.5->chr15:41128006-41136585:-,INO80->INO80_complex_subunit,chr15:41271078-41408552:-	CHAGOK1_LUNG	0.5	0.85	0.3298	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MIER1--RP11-417J8.1	11	87	MIER1	8915	chr1:67412845:+	RP11-417J8.1	28631	chr1:142557333:+	INCL_NON_REF_SPLICE	YES	29	0	0.77	1	0.093	0.7358	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,RP11-417J8.1->chr1:142553293-142559170:+	CHAGOK1_LUNG	0.77	1	0.8288	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	HMGXB4--RP11-513G11.2	25	0	HMGXB4	1106	chr22:35653550:+	RP11-513G11.2	18435	chr3:193994709:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2114	0	HMGXB4->HMG-box_containing_4,chr22:35653445-35691800:+,RP11-513G11.2->chr3:193994471-194005157:+	CHAGOK1_LUNG	1	1	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PDSS1--FAM188A	22	1	PDSS1	11794	chr10:27031506:+	FAM188A	17576	chr10:15889942:-	ONLY_REF_SPLICE	YES	18	26	0.56	0.47	0.1861	0.0085	PDSS1->chr10:26986588-27035727:+,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_1,FAM188A->chr10:15820169-15902519:-,family_with_sequence_similarity_188_member_A	CHAGOK1_LUNG	0.47	0.56	0.1946	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PIGB--DNAJC13	21	5	PIGB	1454	chr15:55611611:+	DNAJC13	21000	chr3:132153382:+	ONLY_REF_SPLICE	YES	31	9	0.46	0.74	0.1776	0.0423	PIGB->chr15:55611158-55647846:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_B,DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+	CHAGOK1_LUNG	0.46	0.74	0.2199	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	DNAJC13--TLN2	20	2	DNAJC13	1235	chr3:132136604:+	TLN2	63039	chr15:62881886:+	ONLY_REF_SPLICE	YES	4	0	0.85	1	0.1692	0.0169	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,TLN2->chr15:62682725-63136830:+,talin_2	CHAGOK1_LUNG	0.85	1	0.1861	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	SKIL--MECOM	5	52	SKIL	4752	chr3:170079217:+	MECOM	22778	chr3:168867543:-	ONLY_REF_SPLICE	YES	55	8	0.51	0.88	0.0423	0.4398	{Klijn_CCL:Lung=1},SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+,MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-	CHAGOK1_LUNG	0.51	0.88	0.4821	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PYGO1--MAPK6	16	4	PYGO1	2113	chr15:55880033:-	MAPK6	27553	chr15:52350830:+	ONLY_REF_SPLICE	YES	1	38	0.95	0.34	0.1353	0.0338	{Klijn_CCL:Lung=1},PYGO1->chr15:55831088-55881145:-,pygopus_family_PHD_finger_1,MAPK6->Oncogene{Bushman},chr15:52244303-52358462:+,mitogen-activated_protein_kinase_6	CHAGOK1_LUNG	0.34	0.95	0.1691	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	UFD1L--TXNRD2	16	0	UFD1L	1133	chr22:19466606:-	TXNRD2	24348	chr22:19907122:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1353	0	UFD1L->chr22:19437433-19466738:-,ubiquitin_fusion_degradation_1_like_(yeast),TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2	CHAGOK1_LUNG	1	1	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	KDM5B--MIER1	14	3	KDM5B	2369	chr1:202777230:-	MIER1	57021	chr1:67450255:+	ONLY_REF_SPLICE	YES	37	15	0.31	0.53	0.1184	0.0254	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+	CHAGOK1_LUNG	0.31	0.53	0.1438	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	HERC1--FSIP1	9	16	HERC1	1116	chr15:64126026:-	FSIP1	100032	chr15:39910446:-	ONLY_REF_SPLICE	YES	7	2	0.78	0.93	0.0761	0.1353	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,FSIP1->chr15:39892232-40075031:-,fibrous_sheath_interacting_protein_1	CHAGOK1_LUNG	0.78	0.93	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	SVIL--PIP4K2A	11	6	SVIL	19073	chr10:29818634:-	PIP4K2A	60663	chr10:22898646:-	ONLY_REF_SPLICE	YES	27	7	0.39	0.71	0.093	0.0507	SVIL->chr10:29746267-30025710:-,supervillin,PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha	CHAGOK1_LUNG	0.39	0.71	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PRKCI--MECOM	11	5	PRKCI	4669	chr3:169981217:+	MECOM	28031	chr3:169099312:-	ONLY_REF_SPLICE	YES	89	4	0.15	0.8	0.093	0.0423	{Klijn_CCL:Lung=1},PRKCI->ArcherDX_panel,FoundationOne_panel,chr3:169940153-170023769:+,protein_kinase_C_iota,MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-	CHAGOK1_LUNG	0.15	0.8	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RP11-488P3.1--GLMN	9	12	RP11-488P3.1	1248	chr1:94240753:-	GLMN	10376	chr1:92755863:-	ONLY_REF_SPLICE	YES	9	43	0.7	0.33	0.0761	0.1015	RP11-488P3.1->chr1:94218480-94241000:-,GLMN->Oncogene{Bushman},chr1:92711959-92764544:-,glomulin,_FKBP_associated_protein	CHAGOK1_LUNG	0.33	0.7	0.1776	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	NMT2--PDE3A	11	2	NMT2	1191	chr10:15210502:-	PDE3A	22910	chr12:20709594:+	ONLY_REF_SPLICE	YES	24	1	0.35	0.93	0.093	0.0169	NMT2->N-myristoyltransferase_2,chr10:15144583-15210692:-,PDE3A->chr12:20522179-20837315:+,phosphodiesterase_3A	CHAGOK1_LUNG	0.35	0.93	0.1099	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	HERC1--FSIP1	7	17	HERC1	1121	chr15:64126021:-	FSIP1	100032	chr15:39910446:-	ONLY_REF_SPLICE	YES	8	2	0.75	0.92	0.0592	0.1438	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,FSIP1->chr15:39892232-40075031:-,fibrous_sheath_interacting_protein_1	CHAGOK1_LUNG	0.75	0.92	0.203	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MECOM--PRKCI	10	1	MECOM	1283	chr3:169381124:-	PRKCI	46322	chr3:169999670:+	ONLY_REF_SPLICE	YES	4	119	0.73	0.08	0.0846	0.0085	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,PRKCI->ArcherDX_panel,FoundationOne_panel,chr3:169940153-170023769:+,protein_kinase_C_iota	CHAGOK1_LUNG	0.08	0.73	0.0931	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	APTX--NOL6	3	28	APTX	11552	chr9:32984629:-	NOL6	27090	chr9:33464964:-	INCL_NON_REF_SPLICE	YES	27	25	0.53	0.55	0.0254	0.2368	{Klijn_CCL:Lung=1},APTX->aprataxin,chr9:32972604-33025166:-,NOL6->chr9:33461439-33473928:-,nucleolar_protein_6	CHAGOK1_LUNG	0.53	0.55	0.2622	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MTATP6P1--RP5-857K21.7	10	0	MTATP6P1	1122	chr1:569197:+	RP5-857K21.7	4832	chr1:568287:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	LOCAL_REARRANGEMENT:+:[258],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,RP5-857K21.7->chr1:568137-568818:+	CHAGOK1_LUNG	1	1	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RTN4R--AP2M1	10	0	RTN4R	5750	chr22:20255594:-	AP2M1	14078	chr3:183894739:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0846	0	RTN4R->chr22:20228938-20270769:-,reticulon_4_receptor,AP2M1->adaptor_related_protein_complex_2_mu_1_subunit,chr3:183892477-183901879:+	CHAGOK1_LUNG	1	1	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	NOTCH2NL--MIER1	8	5	NOTCH2NL	4800	chr1:145248894:+	MIER1	36534	chr1:67450255:+	ONLY_REF_SPLICE	YES	36	15	0.27	0.46	0.0677	0.0423	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+	CHAGOK1_LUNG	0.27	0.46	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	GMEB2--STMN3	8	3	GMEB2	4984	chr20:62234318:-	STMN3	18291	chr20:62275662:-	ONLY_REF_SPLICE	YES	43	15	0.2	0.42	0.0677	0.0254	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[12667],GMEB2->chr20:62218955-62258394:-,glucocorticoid_modulatory_element_binding_protein_2,STMN3->chr20:62271061-62284780:-,stathmin_3	CHAGOK1_LUNG	0.2	0.42	0.0931	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MECOM--PRKCI	8	2	MECOM	1283	chr3:169381124:-	PRKCI	36981	chr3:169953018:+	ONLY_REF_SPLICE	YES	4	57	0.71	0.15	0.0677	0.0169	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,PRKCI->ArcherDX_panel,FoundationOne_panel,chr3:169940153-170023769:+,protein_kinase_C_iota	CHAGOK1_LUNG	0.15	0.71	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RP11-304L19.1--CRAMP1L	8	1	RP11-304L19.1	2303	chr16:2143013:+	CRAMP1L	11702	chr16:1682213:+	ONLY_REF_SPLICE	YES	14	17	0.39	0.35	0.0677	0.0085	RP11-304L19.1->chr16:2141437-2145426:+,CRAMP1L->chr16:1662326-1727909:+	CHAGOK1_LUNG	0.35	0.39	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	BCAR3--GLMN	7	1	BCAR3	2227	chr1:94311123:-	GLMN	31811	chr1:92757094:-	ONLY_REF_SPLICE	YES	0	20	1	0.29	0.0592	0.0085	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,GLMN->Oncogene{Bushman},chr1:92711959-92764544:-,glomulin,_FKBP_associated_protein	CHAGOK1_LUNG	0.29	1	0.0677	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	APTX--NOL6	5	8	APTX	11552	chr9:32984629:-	NOL6	27895	chr9:33464159:-	ONLY_REF_SPLICE	YES	27	37	0.33	0.26	0.0423	0.0677	{Klijn_CCL:Lung=1},APTX->aprataxin,chr9:32972604-33025166:-,NOL6->chr9:33461439-33473928:-,nucleolar_protein_6	CHAGOK1_LUNG	0.26	0.33	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	CMTM4--NAE1	7	0	CMTM4	1368	chr16:66730243:-	NAE1	18773	chr16:66860683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0592	0	CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,NAE1->NEDD8_activating_enzyme_E1_subunit_1,chr16:66836778-66907159:-	CHAGOK1_LUNG	1	1	0.0592	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PDE4D--CDHR2	6	4	PDE4D	39303	chr5:58334686:-	CDHR2	64338	chr5:175995679:+	ONLY_REF_SPLICE	YES	129	0	0.07	1	0.0507	0.0338	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,CDHR2->cadherin_related_family_member_2,chr5:175969512-176022975:+	CHAGOK1_LUNG	0.07	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RBMS3--AP005135.2	6	2	RBMS3	2948	chr3:29476406:+	AP005135.2	34900	chr11:134931841:-	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0507	0.0169	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,AP005135.2->chr11:134931675-134945793:-	CHAGOK1_LUNG	0.42	1	0.0676	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MTATP6P1--RP5-857K21.7	6	0	MTATP6P1	1158	chr1:569233:+	RP5-857K21.7	4834	chr1:568289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	LOCAL_REARRANGEMENT:+:[258],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,RP5-857K21.7->chr1:568137-568818:+	CHAGOK1_LUNG	1	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	CCPG1--SHC4	4	7	CCPG1	1664	chr15:55700045:-	SHC4	28044	chr15:49183008:-	ONLY_REF_SPLICE	YES	23	0	0.32	1	0.0338	0.0592	CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	CHAGOK1_LUNG	0.32	1	0.093	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	TCEA1P4--NOL6	5	2	TCEA1P4	1338	chr9:32980064:-	NOL6	13366	chr9:33464974:-	INCL_NON_REF_SPLICE	YES	5	27	0.58	0.21	0.0423	0.0169	TCEA1P4->chr9:32979558-32980401:-,transcription_elongation_factor_A1_pseudogene_4,NOL6->chr9:33461439-33473928:-,nucleolar_protein_6	CHAGOK1_LUNG	0.21	0.58	0.0592	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	APTX--NOL6	4	5	APTX	11552	chr9:32984629:-	NOL6	28136	chr9:33463918:-	ONLY_REF_SPLICE	YES	27	69	0.25	0.12	0.0338	0.0423	{Klijn_CCL:Lung=1},APTX->aprataxin,chr9:32972604-33025166:-,NOL6->chr9:33461439-33473928:-,nucleolar_protein_6	CHAGOK1_LUNG	0.12	0.25	0.0761	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	SKIL--MECOM	1	17	SKIL	4752	chr3:170079217:+	MECOM	30895	chr3:168849319:-	ONLY_REF_SPLICE	NO	55	44	0.25	0.29	0.0085	0.1438	{Klijn_CCL:Lung=1},SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+,MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-	CHAGOK1_LUNG	0.25	0.29	0.1523	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MTATP6P1--RP5-857K21.7	4	0	MTATP6P1	1120	chr1:569195:+	RP5-857K21.7	4828	chr1:568283:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[258],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,RP5-857K21.7->chr1:568137-568818:+	CHAGOK1_LUNG	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	STX16--RPS18	4	0	STX16	4975	chr20:57243183:+	RPS18	16413	chr6:33239854:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	STX16->chr20:57226328-57254582:+,syntaxin_16,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	CHAGOK1_LUNG	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	DNAJC13--PIGB	3	1	DNAJC13	1235	chr3:132136604:+	PIGB	64113	chr15:55621922:+	ONLY_REF_SPLICE	YES	4	15	0.5	0.21	0.0254	0.0085	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,PIGB->chr15:55611158-55647846:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_B	CHAGOK1_LUNG	0.21	0.5	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	DNAJC13--PIGB	3	1	DNAJC13	1235	chr3:132136604:+	PIGB	61953	chr15:55616978:+	ONLY_REF_SPLICE	YES	4	20	0.5	0.17	0.0254	0.0085	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,PIGB->chr15:55611158-55647846:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_B	CHAGOK1_LUNG	0.17	0.5	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	TEAD1--PARVA	3	0	TEAD1	2140	chr11:12697108:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	CHAGOK1_LUNG	1	1	0.0254	TRUE	0	2	0	5	2	TRUE	ACH-000867
CHAGOK1_LUNG	DNAJC13--PIGB	2	1	DNAJC13	1235	chr3:132136604:+	PIGB	63008	chr15:55619729:+	ONLY_REF_SPLICE	YES	4	16	0.43	0.16	0.0169	0.0085	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,PIGB->chr15:55611158-55647846:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_B	CHAGOK1_LUNG	0.16	0.43	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	IL6R--GATAD2B	2	1	IL6R	6487	chr1:154408586:+	GATAD2B	20688	chr1:153800824:-	ONLY_REF_SPLICE	YES	3	27	0.5	0.1	0.0169	0.0085	GTEx&tcga_normals:1/3694=0.03%,IL6R->chr1:154377669-154441926:+,interleukin_6_receptor,GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-	CHAGOK1_LUNG	0.1	0.5	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	ATP11A--CUL4A	2	0	ATP11A	31176	chr13:113516889:+	CUL4A	67191	chr13:113917801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,CUL4A->chr13:113862552-113919399:+,cullin_4A	CHAGOK1_LUNG	1	1	0.0169	TRUE	0	1	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	CCPG1--SHC4	1	4	CCPG1	1290	chr15:55700419:-	SHC4	29108	chr15:49176564:-	ONLY_REF_SPLICE	YES	19	0	0.21	1	0.0085	0.0338	CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	CHAGOK1_LUNG	0.21	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RPS19--POU2F2	2	0	RPS19	1577	chr19:42364564:+	POU2F2	17092	chr19:42626728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19,POU2F2->Oncogene{Bushman},POU_class_2_homeobox_2,chr19:42590263-42700737:-	CHAGOK1_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RPS25--DNAJC16	2	0	RPS25	1410	chr11:118888992:-	DNAJC16	19725	chr1:15892414:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,DNAJC16->DnaJ_heat_shock_protein_family_(Hsp40)_member_C16,chr1:15853308-15918874:+	CHAGOK1_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	TEAD1--PARVA	2	0	TEAD1	4496	chr11:12785981:+	PARVA	38719	chr11:12518005:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	CHAGOK1_LUNG	1	1	0.0169	TRUE	0	0	0	2	0	TRUE	ACH-000867
CHAGOK1_LUNG	TRAM1--NCL	2	0	TRAM1	1311	chr8:71520312:-	NCL	26972	chr2:232320335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	TRAM1->chr8:71485677-71520622:-,translocation_associated_membrane_protein_1,NCL->chr2:232318242-232348352:-,nucleolin	CHAGOK1_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	UFD1L--TXNRD2	2	0	UFD1L	1391	chr22:19466348:-	TXNRD2	24348	chr22:19907122:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	UFD1L->chr22:19437433-19466738:-,ubiquitin_fusion_degradation_1_like_(yeast),TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2	CHAGOK1_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	KDM5B--MIER1	1	3	KDM5B	3494	chr1:202776105:-	MIER1	57021	chr1:67450255:+	ONLY_REF_SPLICE	YES	42	15	0.09	0.21	0.0085	0.0254	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+	CHAGOK1_LUNG	0.09	0.21	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PIGB--TLN2	1	3	PIGB	7863	chr15:55626205:+	TLN2	24282	chr15:62881886:+	ONLY_REF_SPLICE	NO	31	0	0.11	1	0.0085	0.0254	PIGB->chr15:55611158-55647846:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_B,TLN2->chr15:62682725-63136830:+,talin_2	CHAGOK1_LUNG	0.11	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PRKACB--HIVEP3	1	3	PRKACB	1310	chr1:84544054:+	HIVEP3	30125	chr1:42331286:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0085	0.0254	PRKACB->chr1:84543745-84704181:+,protein_kinase_cAMP-activated_catalytic_subunit_beta,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	CHAGOK1_LUNG	0.19	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	NMT2--PDE3A	1	2	NMT2	1334	chr10:15210359:-	PDE3A	22910	chr12:20709594:+	ONLY_REF_SPLICE	YES	27	1	0.1	0.75	0.0085	0.0169	NMT2->N-myristoyltransferase_2,chr10:15144583-15210692:-,PDE3A->chr12:20522179-20837315:+,phosphodiesterase_3A	CHAGOK1_LUNG	0.1	0.75	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	DNAJC13--TLN2	1	1	DNAJC13	1235	chr3:132136604:+	TLN2	64115	chr15:62910550:+	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0085	0.0085	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,TLN2->chr15:62682725-63136830:+,talin_2	CHAGOK1_LUNG	0.33	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000867
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3D-11--AC096579.7	5807	9623	IGKV3D-11	1604	chr2:90212246:+	AC096579.7	6301	chr2:89161429:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	52.5151	87.0248	GTEx_FI:{Lung=[count:2=pct:1.2]},IGKV3D-11->chr2:90211643-90212253:+,immunoglobulin_kappa_variable_3D-11,AC096579.7->chr2:89130700-89165653:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	139.5399	TRUE	0	1	0	1	1	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3D-11--AC096579.7	3	8358	IGKV3D-11	1604	chr2:90212246:+	AC096579.7	6316	chr2:89161414:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0271	75.5849	GTEx_FI:{Lung=[count:2=pct:1.2]},IGKV3D-11->chr2:90211643-90212253:+,immunoglobulin_kappa_variable_3D-11,AC096579.7->chr2:89130700-89165653:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	75.612	TRUE	0	1	0	1	1	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	457	3	ANP32B	9252	chr9:100774754:+	NCL	18735	chr2:232326361:-	INCL_NON_REF_SPLICE	YES	797	2240	0.37	0.17	4.1328	0.0271	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.37	4.1599	TRUE	0	0	0	7	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPAP2B--RP11-504A18.1	83	19	PPAP2B	11874	chr1:56962227:-	RP11-504A18.1	19126	chr1:56714873:-	INCL_NON_REF_SPLICE	YES	32	0	0.76	1	0.7506	0.1718	PPAP2B->Oncogene{Bushman},chr1:56960419-57110974:-,RP11-504A18.1->chr1:56713966-56724243:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.9224	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP6--STXBP5-AS1	70	33	SENP6	4031	chr6:76331341:+	STXBP5-AS1	56437	chr6:147172467:-	ONLY_REF_SPLICE	YES	42	0	0.71	1	0.633	0.2984	SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.9314	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP6--STXBP5-AS1	52	17	SENP6	2068	chr6:76312292:+	STXBP5-AS1	56437	chr6:147172467:-	ONLY_REF_SPLICE	YES	33	0	0.68	1	0.4703	0.1537	SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	0.624	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRG--UTRN	42	10	PTPRG	2909	chr3:61734656:+	UTRN	69948	chr6:144782333:+	ONLY_REF_SPLICE	YES	19	3	0.73	0.95	0.3798	0.0904	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,UTRN->chr6:144606837-145174170:+,utrophin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.95	0.4702	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT6A--PLEKHA5	25	19	KAT6A	3420	chr8:41905896:-	PLEKHA5	34563	chr12:19285327:+	ONLY_REF_SPLICE	YES	27	17	0.62	0.72	0.2261	0.1718	KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.72	0.3979	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP6--STXBP5-AS1	19	36	SENP6	5139	chr6:76332574:+	STXBP5-AS1	56437	chr6:147172467:-	ONLY_REF_SPLICE	YES	44	0	0.56	1	0.1718	0.3256	SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.4974	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	24	0	ANP32B	6936	chr9:100767435:+	NCL	19660	chr2:232325436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.217	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.217	TRUE	0	0	0	2	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BIRC6--FBXO11	16	15	BIRC6	3779	chr2:32605358:+	FBXO11	89981	chr2:48066908:-	ONLY_REF_SPLICE	YES	38	11	0.45	0.74	0.1447	0.1357	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,FBXO11->F-box_protein_11,chr2:48016455-48132932:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.74	0.2804	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BIRC6--FBXO11	16	4	BIRC6	1459	chr2:32582554:+	FBXO11	89981	chr2:48066908:-	ONLY_REF_SPLICE	YES	18	11	0.53	0.65	0.1447	0.0362	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,FBXO11->F-box_protein_11,chr2:48016455-48132932:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.65	0.1809	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO11--BIRC6	15	6	FBXO11	1305	chr2:48132628:-	BIRC6	32152	chr2:32613818:+	ONLY_REF_SPLICE	YES	10	37	0.68	0.36	0.1357	0.0543	FBXO11->F-box_protein_11,chr2:48016455-48132932:-,BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.68	0.19	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSC1--PRRC2B	12	6	TSC1	9644	chr9:135796750:-	PRRC2B	41813	chr9:134334551:+	ONLY_REF_SPLICE	YES	26	185	0.41	0.09	0.1085	0.0543	TSC1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:135766735-135820020:-,tuberous_sclerosis_1,PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.41	0.1628	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3D-11--AC096579.7	7	23	IGKV3D-11	1146	chr2:90211788:+	AC096579.7	7333	chr2:89157196:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0633	0.208	GTEx_FI:{Lung=[count:2=pct:1.2]},IGKV3D-11->chr2:90211643-90212253:+,immunoglobulin_kappa_variable_3D-11,AC096579.7->chr2:89130700-89165653:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2713	TRUE	0	2	0	1	2	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKNA--FBXL20	11	6	AKNA	6903	chr9:117136373:-	FBXL20	38539	chr17:37455337:-	ONLY_REF_SPLICE	YES	265	8	0.06	0.68	0.0995	0.0543	AKNA->AT-hook_transcription_factor,chr9:117096436-117156685:-,FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.68	0.1538	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXL20--AKNA	10	0	FBXL20	5355	chr17:37457254:-	AKNA	29674	chr9:117130875:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0904	0	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,AKNA->AT-hook_transcription_factor,chr9:117096436-117156685:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0904	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT6A--PLEKHA5	6	13	KAT6A	3420	chr8:41905896:-	PLEKHA5	43325	chr12:19406874:+	ONLY_REF_SPLICE	YES	27	14	0.41	0.58	0.0543	0.1176	KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.58	0.1719	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT6A--PLEKHA5	3	21	KAT6A	3420	chr8:41905896:-	PLEKHA5	32427	chr12:19282687:+	INCL_NON_REF_SPLICE	YES	27	0	0.47	1	0.0271	0.1899	KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.217	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP6--STXBP5-AS1	8	1	SENP6	2068	chr6:76312292:+	STXBP5-AS1	58610	chr6:147165848:-	ONLY_REF_SPLICE	YES	33	86	0.21	0.09	0.0723	0.009	SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.21	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BIRC6--FBXO11	1	15	BIRC6	3779	chr2:32605358:+	FBXO11	88880	chr2:48093031:-	ONLY_REF_SPLICE	YES	38	14	0.3	0.53	0.009	0.1357	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,FBXO11->F-box_protein_11,chr2:48016455-48132932:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.53	0.1447	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-3116E22.6--ZNF274	4	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0362	TRUE	0	0	0	13	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRG--UTRN	3	3	PTPRG	2909	chr3:61734656:+	UTRN	72307	chr6:144794856:+	ONLY_REF_SPLICE	YES	19	27	0.24	0.18	0.0271	0.0271	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,UTRN->chr6:144606837-145174170:+,utrophin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.24	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BIRC6--FBXO11	1	7	BIRC6	2641	chr2:32602837:+	FBXO11	89981	chr2:48066908:-	ONLY_REF_SPLICE	YES	22	11	0.27	0.42	0.009	0.0633	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,FBXO11->F-box_protein_11,chr2:48016455-48132932:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.42	0.0723	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--CTCF	2	0	DANCR	1530	chr4:53579126:+	CTCF	8612	chr16:67605051:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--ZADH2	2	0	DANCR	1530	chr4:53579126:+	ZADH2	10603	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO11--BIRC6	2	0	FBXO11	1305	chr2:48132628:-	BIRC6	53795	chr2:32688262:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	FBXO11->F-box_protein_11,chr2:48016455-48132932:-,BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--FAF2	2	0	IGLL5	1480	chr22:23230439:+	FAF2	10743	chr5:175906189:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,FAF2->Fas_associated_factor_family_member_2,chr5:175874629-175937075:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INVS--ERP44	2	0	INVS	5175	chr9:102888831:+	ERP44	31082	chr9:102822454:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[216],INVS->chr9:102861538-103063282:+,inversin,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	3	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT6A--PLEKHA5	2	0	KAT6A	1090	chr8:41909419:-	PLEKHA5	34563	chr12:19285327:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT6A--RP11-282K24.1	2	0	KAT6A	3420	chr8:41905896:-	RP11-282K24.1	32491	chr12:19242077:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A,RP11-282K24.1->chr12:19241974-19242825:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00478--USP25	2	0	LINC00478	17426	chr21:17979407:+	USP25	50353	chr21:17238585:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LINC00478->chr21:17442842-17999716:+,USP25->chr21:17102344-17252377:+,ubiquitin_specific_peptidase_25	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MCTP1--CTD-2410N18.5	2	0	MCTP1	5265	chr5:94417130:-	CTD-2410N18.5	46345	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	MCTP1->chr5:94039446-94620279:-,multiple_C2_and_transmembrane_domain_containing_1,CTD-2410N18.5->chr5:133502861-133561762:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMSB4X--TLR8	2	0	TMSB4X	1061	chrX:12993287:+	TLR8	8348	chrX:12937163:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_REARRANGEMENT:+:[51939],TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked,TLR8->chrX:12924739-12941288:+,toll_like_receptor_8	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CCT4	2	0	USP34	1120	chr2:61697785:-	CCT4	79292	chr2:62110683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Sarcomatoid=1,Skin=1,Kidney=1,Lymphoid=1},USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	2	0	TRUE	ACH-000068
HUH6_LIVER	CKB--hsa-mir-6723	39	7	CKB	4320	chr14:103986129:-	hsa-mir-6723	7451	chr1:566451:+	INCL_NON_REF_SPLICE	YES	538	0	0.08	1	0.4713	0.0846	CKB->chr14:103985996-103989448:-,creatine_kinase_B,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0.08	1	0.5559	TRUE	0	0	1	1	0	TRUE	ACH-000671
HUH6_LIVER	AAGAB--RP11-798K3.2	11	1	AAGAB	6028	chr15:67524152:-	RP11-798K3.2	21867	chr15:67279600:-	ONLY_REF_SPLICE	YES	83	2	0.13	0.86	0.1329	0.0121	AAGAB->alpha-_and_gamma-adaptin_binding_protein,chr15:67493371-67547533:-,RP11-798K3.2->chr15:67278699-67351591:-	HUH6_LIVER	0.13	0.86	0.145	TRUE	0	2	0	1	2	TRUE	ACH-000671
HUH6_LIVER	CKB--hsa-mir-6723	6	8	CKB	4334	chr14:103986115:-	hsa-mir-6723	7465	chr1:566465:+	INCL_NON_REF_SPLICE	YES	312	0	0.04	1	0.0725	0.0967	CKB->chr14:103985996-103989448:-,creatine_kinase_B,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0.04	1	0.1692	TRUE	0	0	1	1	0	TRUE	ACH-000671
HUH6_LIVER	AAGAB--RP11-798K3.2	6	1	AAGAB	6028	chr15:67524152:-	RP11-798K3.2	21482	chr15:67279985:-	ONLY_REF_SPLICE	YES	83	0	0.08	1	0.0725	0.0121	AAGAB->alpha-_and_gamma-adaptin_binding_protein,chr15:67493371-67547533:-,RP11-798K3.2->chr15:67278699-67351591:-	HUH6_LIVER	0.08	1	0.0846	TRUE	0	2	0	1	2	TRUE	ACH-000671
HUH6_LIVER	RP11-475O23.3--GDI2	4	0	RP11-475O23.3	2988	chr3:58618387:+	GDI2	14105	chr10:5836982:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	RP11-475O23.3->chr3:58592807-58620167:+,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	HUH6_LIVER	1	1	0.0483	TRUE	0	1	0	1	1	TRUE	ACH-000671
HUH6_LIVER	AL136376.1--RPS28	3	1	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.0121	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HUH6_LIVER	1	1	0.0484	TRUE	0	0	0	12	0	TRUE	ACH-000671
HUH6_LIVER	BTRC--CCNY	2	0	BTRC	1166	chr10:103113985:+	CCNY	35927	chr10:35772332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+,CCNY->chr10:35535953-35860852:+,cyclin_Y	HUH6_LIVER	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000671
HUH6_LIVER	FARP1--STK24	2	0	FARP1	1931	chr13:98795746:+	STK24	70323	chr13:99171727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Aorta=1,Pituitary=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Ovary=1},LOCAL_INVERSION:+:-:[428],FARP1->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_1,chr13:98794816-99102027:+,STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24	HUH6_LIVER	1	1	0.0242	TRUE	0	0	0	2	0	TRUE	ACH-000671
HUH6_LIVER	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	HUH6_LIVER	1	1	0.0242	TRUE	0	0	0	18	0	TRUE	ACH-000671
HUH6_LIVER	RP11-296O14.3--TNFSF4	1	1	RP11-296O14.3	3164	chr1:173411058:-	TNFSF4	11987	chr1:173157708:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0121	0.0121	RP11-296O14.3->chr1:173386932-173430501:-,TNFSF4->chr1:173152873-173176452:-,tumor_necrosis_factor_superfamily_member_4	HUH6_LIVER	0.67	1	0.0242	TRUE	0	5	1	1	5	TRUE	ACH-000671
NCIH1568_LUNG	EIF3CL--SNX29P2	68	45	EIF3CL	8589	chr16:28399379:-	SNX29P2	30764	chr16:29380856:+	ONLY_REF_SPLICE	YES	2193	0	0.05	1	0.7962	0.5269	EIF3CL->chr16:28390900-28415200:-,eukaryotic_translation_initiation_factor_3_subunit_C-like,SNX29P2->chr16:29262829-29519817:+,chr16:29362067-29381593:+,sorting_nexin_29_pseudogene_2	NCIH1568_LUNG	0.05	1	1.3231	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	ACBD7--PROSP	36	6	ACBD7	1060	chr10:15130716:-	PROSP	16170	chr3:90264913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4215	0.0703	ACBD7->acyl-CoA_binding_domain_containing_7,chr10:15119522-15130775:-,PROSP->chr3:90251466-90306565:-	NCIH1568_LUNG	1	1	0.4918	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	SNX29P1--ENPEP	20	8	SNX29P1	3846	chr16:21397253:+	ENPEP	17384	chr4:111430809:+	ONLY_REF_SPLICE	YES	0	12	1	0.7	0.2342	0.0937	SNX29P1->chr16:21391313-21403412:+,sorting_nexin_29_pseudogene_1,ENPEP->chr4:111286889-111486441:+,glutamyl_aminopeptidase	NCIH1568_LUNG	0.7	1	0.3279	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	RP11-353N4.6--GFOD1	18	11	RP11-353N4.6	2219	chr1:149576700:+	GFOD1	22105	chr6:13365894:-	ONLY_REF_SPLICE	YES	173	20	0.14	0.59	0.2108	0.1288	RP11-353N4.6->chr1:149575482-149616786:+,GFOD1->chr6:13358062-13487894:-,glucose-fructose_oxidoreductase_domain_containing_1	NCIH1568_LUNG	0.14	0.59	0.3396	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	FAM188A--ACBD7	11	10	FAM188A	4630	chr10:15883425:-	ACBD7	23216	chr10:15121039:-	ONLY_REF_SPLICE	YES	70	0	0.23	1	0.1288	0.1171	FAM188A->chr10:15820169-15902519:-,family_with_sequence_similarity_188_member_A,ACBD7->acyl-CoA_binding_domain_containing_7,chr10:15119522-15130775:-	NCIH1568_LUNG	0.23	1	0.2459	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	HDAC8--RP11-525K10.3	10	9	HDAC8	4154	chrX:71787739:-	RP11-525K10.3	28680	chr16:80526662:-	ONLY_REF_SPLICE	YES	55	0	0.26	1	0.1171	0.1054	HDAC8->chrX:71549366-71792953:-,histone_deacetylase_8,RP11-525K10.3->chr16:80188950-80597032:-	NCIH1568_LUNG	0.26	1	0.2225	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	TLE2--AC005264.2	9	11	TLE2	8876	chr19:3019281:-	AC005264.2	28036	chr19:3143191:-	ONLY_REF_SPLICE	YES	164	2	0.11	0.91	0.1054	0.1288	LOCAL_REARRANGEMENT:-:[93941],TLE2->chr19:2997636-3047633:-,transducin_like_enhancer_of_split_2,AC005264.2->chr19:3141574-3155173:-	NCIH1568_LUNG	0.11	0.91	0.2342	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	TLE2--AC005264.2	9	7	TLE2	8460	chr19:3019697:-	AC005264.2	28036	chr19:3143191:-	ONLY_REF_SPLICE	YES	121	2	0.12	0.89	0.1054	0.082	LOCAL_REARRANGEMENT:-:[93941],TLE2->chr19:2997636-3047633:-,transducin_like_enhancer_of_split_2,AC005264.2->chr19:3141574-3155173:-	NCIH1568_LUNG	0.12	0.89	0.1874	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	ENPEP--NMT2	9	5	ENPEP	13308	chr4:111441522:+	NMT2	40785	chr10:15154962:-	ONLY_REF_SPLICE	YES	13	41	0.52	0.25	0.1054	0.0585	ENPEP->chr4:111286889-111486441:+,glutamyl_aminopeptidase,NMT2->N-myristoyltransferase_2,chr10:15144583-15210692:-	NCIH1568_LUNG	0.25	0.52	0.1639	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	TLE2--AC005264.2	6	13	TLE2	8876	chr19:3019281:-	AC005264.2	26909	chr19:3148740:-	INCL_NON_REF_SPLICE	YES	164	4	0.1	0.83	0.0703	0.1522	LOCAL_REARRANGEMENT:-:[93941],TLE2->chr19:2997636-3047633:-,transducin_like_enhancer_of_split_2,AC005264.2->chr19:3141574-3155173:-	NCIH1568_LUNG	0.1	0.83	0.2225	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	HDAC8--RP11-525K10.3	4	11	HDAC8	4154	chrX:71787739:-	RP11-525K10.3	27479	chr16:80541666:-	ONLY_REF_SPLICE	YES	55	0	0.21	1	0.0468	0.1288	HDAC8->chrX:71549366-71792953:-,histone_deacetylase_8,RP11-525K10.3->chr16:80188950-80597032:-	NCIH1568_LUNG	0.21	1	0.1756	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	LINC00623--RARB	3	5	LINC00623	2231	chr1:144340526:-	RARB	26246	chr3:25502684:+	ONLY_REF_SPLICE	YES	172	3	0.04	0.73	0.0351	0.0585	LINC00623->chr1:144275918-144341756:-,long_intergenic_non-protein_coding_RNA_623,RARB->Oncogene{Bushman},chr3:25215823-25639423:+,retinoic_acid_receptor_beta	NCIH1568_LUNG	0.04	0.73	0.0936	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	EFNA1--CALR	4	0	EFNA1	1546	chr1:155100481:+	CALR	9745	chr19:13049423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0	EFNA1->chr1:155099936-155107333:+,ephrin_A1,CALR->calreticulin,chr19:13049392-13055303:+	NCIH1568_LUNG	1	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	TLE2--AC005264.2	3	3	TLE2	8209	chr19:3019948:-	AC005264.2	26876	chr19:3148773:-	INCL_NON_REF_SPLICE	YES	115	4	0.05	0.6	0.0351	0.0351	LOCAL_REARRANGEMENT:-:[93941],TLE2->chr19:2997636-3047633:-,transducin_like_enhancer_of_split_2,AC005264.2->chr19:3141574-3155173:-	NCIH1568_LUNG	0.05	0.6	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	RP11-1057B8.2--RP11-452N4.1	3	1	RP11-1057B8.2	3793	chr8:135893523:+	RP11-452N4.1	8797	chr8:136300339:+	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0351	0.0117	RP11-1057B8.2->chr8:135862178-135894142:+,RP11-452N4.1->chr8:136246374-136311962:+	NCIH1568_LUNG	0.5	1	0.0468	TRUE	0	0	0	3	0	TRUE	ACH-000869
NCIH1568_LUNG	FAM120B--PSMB1	3	0	FAM120B	3590	chr6:170615930:+	PSMB1	23731	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	NCIH1568_LUNG	1	1	0.0351	TRUE	0	2	0	5	0	TRUE	ACH-000869
NCIH1568_LUNG	LYPLAL1--RRP15	3	0	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	NCIH1568_LUNG	1	1	0.0351	TRUE	0	12	0	13	2	TRUE	ACH-000869
NCIH1568_LUNG	RP11-1057B8.2--RP11-452N4.1	2	1	RP11-1057B8.2	3793	chr8:135893523:+	RP11-452N4.1	9814	chr8:136303419:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0234	0.0117	RP11-1057B8.2->chr8:135862178-135894142:+,RP11-452N4.1->chr8:136246374-136311962:+	NCIH1568_LUNG	0.43	1	0.0351	TRUE	0	0	0	2	0	TRUE	ACH-000869
NCIH1568_LUNG	CNOT1--PSMB1	2	0	CNOT1	25716	chr16:58583623:-	PSMB1	54128	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	NCIH1568_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	DCAF6--RDX	2	0	DCAF6	14064	chr1:167974031:+	RDX	35058	chr11:110150481:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	DCAF6->DDB1_and_CUL4_associated_factor_6,chr1:167905021-168045081:+,RDX->chr11:110045605-110167447:-,radixin	NCIH1568_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	27609	chr13:114193672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	NCIH1568_LUNG	1	1	0.0234	TRUE	0	4	1	3	2	TRUE	ACH-000869
NCIH1568_LUNG	HAUS4--MRPL52	2	0	HAUS4	2493	chr14:23424309:-	MRPL52	15895	chr14:23303381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},HAUS4->HAUS_augmin_like_complex_subunit_4,chr14:23415437-23426370:-,MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	NCIH1568_LUNG	1	1	0.0234	TRUE	0	1	1	1	0	TRUE	ACH-000869
NCIH1568_LUNG	HEXA--SIAH1	2	0	HEXA	18315	chr15:72638576:-	SIAH1	36856	chr16:48396341:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha,SIAH1->chr16:48390275-48482313:-,siah_E3_ubiquitin_protein_ligase_1	NCIH1568_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	LBR--ENAH	2	0	LBR	1972	chr1:225615656:-	ENAH	23714	chr1:225755116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	LOCAL_REARRANGEMENT:-:[57910],LBR->chr1:225589204-225616627:-,lamin_B_receptor,ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila)	NCIH1568_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	LINC01063--VPS53	2	0	LINC01063	1200	chr3:196359259:-	VPS53	17473	chr17:565135:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	LINC01063->chr3:196358369-196359458:-,long_intergenic_non-protein_coding_RNA_1063,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	NCIH1568_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	YWHAZ--ZNF706	2	0	YWHAZ	1120	chr8:101965497:-	ZNF706	24352	chr8:102213971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:2=pct:1.1],Esophagus=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	NCIH1568_LUNG	1	1	0.0234	TRUE	1	0	0	2	0	TRUE	ACH-000869
NCIH1568_LUNG	ZNF283--POLR2B	2	0	ZNF283	1153	chr19:44331596:+	POLR2B	28125	chr4:57876527:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	ZNF283->chr19:44331444-44353307:+,zinc_finger_protein_283,POLR2B->chr4:57843888-57897334:+,polymerase_(RNA)_II_subunit_B	NCIH1568_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	HOMEZ--CDKL1	1	3	HOMEZ	3410	chr14:23755122:-	CDKL1	32445	chr14:50808940:-	ONLY_REF_SPLICE	YES	105	7	0.04	0.36	0.0117	0.0351	HOMEZ->chr14:23741666-23768656:-,homeobox_and_leucine_zipper_encoding,CDKL1->chr14:50796310-50883179:-,cyclin_dependent_kinase_like_1	NCIH1568_LUNG	0.04	0.36	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	CNOT4--SUN5	1	2	CNOT4	1239	chr7:135194637:-	SUN5	24865	chr20:31590725:-	ONLY_REF_SPLICE	YES	46	0	0.06	1	0.0117	0.0234	CNOT4->CCR4-NOT_transcription_complex_subunit_4,chr7:135046547-135194875:-,SUN5->Sad1_and_UNC84_domain_containing_5,chr20:31571579-31592239:-	NCIH1568_LUNG	0.06	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000869
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	212	106	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	63	0	0.83	1	2.1614	1.0807	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	3.2421	TRUE	0	2	1	16	2	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	1	104	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	63	0	0.62	1	0.0102	1.0603	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	1.0705	TRUE	0	2	1	16	2	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	15	3	ABL1	1510	chr9:133589842:+	BCR	40306	chr22:23632526:+	ONLY_REF_SPLICE	YES	0	68	1	0.21	0.1529	0.0306	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.1835	TRUE	0	0	0	6	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PARP11--TMEM117	6	4	PARP11	1231	chr12:3982378:-	TMEM117	23532	chr12:44338013:+	ONLY_REF_SPLICE	YES	10	1	0.5	0.91	0.0612	0.0408	PARP11->chr12:3900213-3982608:-,poly(ADP-ribose)_polymerase_family_member_11,TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.91	0.102	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM117--HDAC7	6	3	TMEM117	2535	chr12:44238731:+	HDAC7	27238	chr12:48189550:-	ONLY_REF_SPLICE	YES	0	145	1	0.06	0.0612	0.0306	TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117,HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0918	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	5	2	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	0	68	1	0.09	0.051	0.0204	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0714	TRUE	0	2	0	9	2	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SRP9	4	0	RCC1	2175	chr1:28834672:+	SRP9	18984	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PARP11--TMEM117	2	5	PARP11	2353	chr12:3973002:-	TMEM117	23532	chr12:44338013:+	ONLY_REF_SPLICE	YES	11	1	0.39	0.88	0.0204	0.051	PARP11->chr12:3900213-3982608:-,poly(ADP-ribose)_polymerase_family_member_11,TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.88	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM117--HDAC7	2	3	TMEM117	2535	chr12:44238731:+	HDAC7	26989	chr12:48189799:-	ONLY_REF_SPLICE	YES	0	123	1	0.04	0.0204	0.0306	TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117,HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.051	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATL2--IGJ	2	0	ATL2	11202	chr2:38540293:-	IGJ	24098	chr4:71532231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,IGJ->chr4:71521258-71547534:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL7A--UBTF	2	0	BCL7A	8549	chr12:122492832:+	UBTF	18894	chr17:42295664:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+,UBTF->chr17:42282401-42298994:-,upstream_binding_transcription_factor,_RNA_polymerase_I	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND3--LDLRAP1	2	0	DENND3	20287	chr8:142178624:+	LDLRAP1	42764	chr1:25880413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	DENND3->DENN_domain_containing_3,chr8:142127377-142205907:+,LDLRAP1->chr1:25870071-25895377:+,low_density_lipoprotein_receptor_adaptor_protein_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EZH2--CUL1	2	0	EZH2	1158	chr7:148581256:-	CUL1	26755	chr7:148427054:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_INVERSION:-:+:[6347],EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit,CUL1->Oncogene{Bushman},chr7:148395006-148498128:+,cullin_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	2	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--CLPTM1L	2	0	FUBP1	14090	chr1:78414840:-	CLPTM1L	39166	chr5:1318568:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITFG1--CNPPD1	2	0	ITFG1	19556	chr16:47345151:-	CNPPD1	35153	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTFR1--MYBL1	2	0	MTFR1	1051	chr8:66557019:+	MYBL1	24858	chr8:67514758:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,MYBL1->MYB_proto-oncogene_like_1,Oncogene{Bushman},chr8:67474410-67526482:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--DVL1	2	0	OAZ1	1259	chr19:2269743:+	DVL1	9459	chr1:1278138:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,DVL1->chr1:1270656-1284730:-,dishevelled_segment_polarity_protein_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4D--NDUFAF2	2	0	PDE4D	1070	chr5:59817878:-	NDUFAF2	60965	chr5:60368952:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	2	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--MRPL3	2	0	RCC1	2175	chr1:28834672:+	MRPL3	27527	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	6	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPRD1A--HGS	2	0	RPRD1A	10586	chr18:33606863:-	HGS	25285	chr17:79653342:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,HGS->chr17:79650356-79670168:+,hepatocyte_growth_factor-regulated_tyrosine_kinase_substrate	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAMP1--AP3B1	2	0	SCAMP1	1214	chr5:77656552:+	AP3B1	36376	chr5:77425131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[65760],SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STIP1--TRIM22	2	0	STIP1	3460	chr11:63960759:+	TRIM22	20126	chr11:5719545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1,TRIM22->chr11:5710919-5758319:+,tripartite_motif_containing_22	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPD52--KAT6A	2	0	TPD52	6214	chr8:81083660:-	KAT6A	30880	chr8:41906820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
OV7_OVARY	SAE1--RP11-100G15.7	31	9	SAE1	3734	chr19:47634285:+	RP11-100G15.7	21857	chr9:94896210:+	ONLY_REF_SPLICE	YES	459	2	0.08	0.95	0.4149	0.1205	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,RP11-100G15.7->chr9:94894680-94900911:+	OV7_OVARY	0.08	0.95	0.5354	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	ZC3H4--RP11-100G15.10	31	2	ZC3H4	2475	chr19:47615405:-	RP11-100G15.10	22470	chr9:94919726:-	INCL_NON_REF_SPLICE	YES	7	0	0.82	1	0.4149	0.0268	ZC3H4->chr19:47567444-47617009:-,zinc_finger_CCCH-type_containing_4,RP11-100G15.10->chr9:94912664-94919727:-	OV7_OVARY	0.82	1	0.4417	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	ZC3H4--RP11-100G15.10	19	5	ZC3H4	3537	chr19:47614152:-	RP11-100G15.10	22470	chr9:94919726:-	INCL_NON_REF_SPLICE	YES	16	0	0.6	1	0.2543	0.0669	ZC3H4->chr19:47567444-47617009:-,zinc_finger_CCCH-type_containing_4,RP11-100G15.10->chr9:94912664-94919727:-	OV7_OVARY	0.6	1	0.3212	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	EIF2AK2--CEBPZ	13	10	EIF2AK2	13936	chr2:37347102:-	CEBPZ	42117	chr2:37430151:-	ONLY_REF_SPLICE	YES	81	58	0.22	0.28	0.174	0.1339	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[44547],EIF2AK2->Oncogene{Bushman},chr2:37326353-37384208:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_2,CEBPZ->CCAAT/enhancer_binding_protein_zeta,chr2:37428755-37458856:-	OV7_OVARY	0.22	0.28	0.3079	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	SAE1--RP11-100G15.7	11	9	SAE1	3734	chr19:47634285:+	RP11-100G15.7	20581	chr9:94894902:+	ONLY_REF_SPLICE	YES	459	0	0.04	1	0.1472	0.1205	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,RP11-100G15.7->chr9:94894680-94900911:+	OV7_OVARY	0.04	1	0.2677	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	ZC3H4--RP11-100G15.10	9	1	ZC3H4	2199	chr19:47615681:-	RP11-100G15.10	22470	chr9:94919726:-	INCL_NON_REF_SPLICE	YES	3	0	0.77	1	0.1205	0.0134	ZC3H4->chr19:47567444-47617009:-,zinc_finger_CCCH-type_containing_4,RP11-100G15.10->chr9:94912664-94919727:-	OV7_OVARY	0.77	1	0.1339	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	PLXNB2--MT2A	8	2	PLXNB2	4885	chr22:50728393:-	MT2A	23273	chr16:56642513:+	INCL_NON_REF_SPLICE	YES	269	5	0.04	0.67	0.1071	0.0268	PLXNB2->chr22:50713408-50746056:-,plexin_B2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	OV7_OVARY	0.04	0.67	0.1339	TRUE	0	0	0	5	0	TRUE	ACH-000688
OV7_OVARY	FN1--MT2A	8	0	FN1	32147	chr2:216248789:-	MT2A	56098	chr16:56643273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1071	0	GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT2A->chr16:56642111-56643409:+,metallothionein_2A	OV7_OVARY	1	1	0.1071	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	IGFBP4--S100A6	8	0	IGFBP4	3668	chr17:38610269:+	S100A6	9247	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1071	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	OV7_OVARY	1	1	0.1071	TRUE	0	0	0	4	0	TRUE	ACH-000688
OV7_OVARY	AP000350.4--PKM	5	8	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	4	1	0.76	0.0669	0.1071	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	OV7_OVARY	0.76	1	0.174	TRUE	0	0	0	14	0	TRUE	ACH-000688
OV7_OVARY	LGALS3BP--ACTB	7	0	LGALS3BP	4091	chr17:76972129:-	ACTB	17100	chr7:5568161:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0937	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	OV7_OVARY	1	1	0.0937	TRUE	0	0	0	2	0	TRUE	ACH-000688
OV7_OVARY	NSF--LRRC37A2	4	6	NSF	15332	chr17:44782220:+	LRRC37A2	28875	chr17:44588877:+	ONLY_REF_SPLICE	YES	111	0	0.08	1	0.0535	0.0803	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	OV7_OVARY	0.08	1	0.1338	TRUE	1	0	0	3	0	TRUE	ACH-000688
OV7_OVARY	ARHGEF10--GNAS	4	0	ARHGEF10	3311	chr8:1791602:+	GNAS	58952	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0535	0	ARHGEF10->Rho_guanine_nucleotide_exchange_factor_10,chr8:1772142-1906807:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	OV7_OVARY	1	1	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	SAE1--RP11-100G15.7	3	3	SAE1	3689	chr19:47634240:+	RP11-100G15.7	21893	chr9:94896246:+	INCL_NON_REF_SPLICE	YES	126	3	0.05	0.67	0.0402	0.0402	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,RP11-100G15.7->chr9:94894680-94900911:+	OV7_OVARY	0.05	0.67	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	TIMP1--FN1	3	0	TIMP1	2184	chrX:47442895:+	FN1	49816	chr2:216236894:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	TIMP1->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_1,chrX:47441712-47446188:+,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	OV7_OVARY	1	1	0.0402	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	VIM-AS1--RPL23	3	0	VIM-AS1	1640	chr10:17271345:-	RPL23	10538	chr17:37009353:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	OV7_OVARY	1	1	0.0402	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	NSF--LRRC37A2	2	3	NSF	15332	chr17:44782220:+	LRRC37A2	33686	chr17:44594728:+	ONLY_REF_SPLICE	YES	111	5	0.04	0.5	0.0268	0.0402	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	OV7_OVARY	0.04	0.5	0.067	TRUE	1	0	0	3	0	TRUE	ACH-000688
OV7_OVARY	MLF1IP--POFUT1	2	0	MLF1IP	6909	chr4:185637551:-	POFUT1	22490	chr20:30803072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	MLF1IP->chr4:185615772-185655287:-,POFUT1->chr20:30795683-30826470:+,protein_O-fucosyltransferase_1	OV7_OVARY	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	UBXN11--SLC19A1	2	0	UBXN11	9442	chr1:26620696:-	SLC19A1	29743	chr21:46935066:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	UBXN11->UBX_domain_protein_11,chr1:26607819-26644854:-,SLC19A1->Oncogene{Bushman},chr21:46913486-46964325:-,solute_carrier_family_19_member_1	OV7_OVARY	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000688
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCC1--PACS2	55	20	SMARCC1	2624	chr3:47814307:-	PACS2	43107	chr14:105814830:+	ONLY_REF_SPLICE	YES	69	4	0.52	0.95	0.6652	0.2419	{Klijn_CCL:Lymphoid=1},SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.95	0.9071	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027612.3--AP000345.1	13	1	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1572	0.0121	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.1693	TRUE	0	0	0	11	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCC1--PACS2	6	10	SMARCC1	2624	chr3:47814307:-	PACS2	44361	chr14:105818715:+	ONLY_REF_SPLICE	YES	69	10	0.19	0.62	0.0726	0.1209	{Klijn_CCL:Lymphoid=1},SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.62	0.1935	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP2B4--ASRGL1	3	4	ATP2B4	3316	chr1:203652526:+	ASRGL1	33454	chr11:62105439:+	ONLY_REF_SPLICE	YES	8	6	0.47	0.54	0.0363	0.0484	{Klijn_CCL:Lymphoid=1},ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.54	0.0847	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL4C--IGKV3-20	3	0	ARL4C	2232	chr2:235404466:-	IGKV3-20	8036	chr2:89442621:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	ARL4C->ADP_ribosylation_factor_like_GTPase_4C,chr2:235401685-235405697:-,IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B2M--AGO2	3	0	B2M	1137	chr15:45003811:+	AGO2	12384	chr8:141616013:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTNNBL1--THRAP3	3	0	CTNNBL1	4318	chr20:36361469:+	THRAP3	41519	chr1:36766593:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+,THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCC1--PACS2	2	4	SMARCC1	1504	chr3:47823093:-	PACS2	43107	chr14:105814830:+	ONLY_REF_SPLICE	YES	47	4	0.11	0.6	0.0242	0.0484	{Klijn_CCL:Lymphoid=1},SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.6	0.0726	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF142--PTMA	3	0	ZNF142	7530	chr2:219513598:-	PTMA	20614	chr2:232573234:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	ZNF142->chr2:219502639-219524378:-,zinc_finger_protein_142,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP2B4--ASRGL1	2	3	ATP2B4	3316	chr1:203652526:+	ASRGL1	34826	chr11:62123797:+	ONLY_REF_SPLICE	YES	8	12	0.38	0.29	0.0242	0.0363	{Klijn_CCL:Lymphoid=1},ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.38	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP2B4--ASRGL1	2	1	ATP2B4	3316	chr1:203652526:+	ASRGL1	35488	chr11:62124459:+	ONLY_REF_SPLICE	YES	8	9	0.27	0.25	0.0242	0.0121	{Klijn_CCL:Lymphoid=1},ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.27	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--CSTF3	2	0	AC104389.28	1084	chr11:5526799:-	CSTF3	15929	chr11:33163532:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	AC104389.28->chr11:5326206-5526882:-,CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--PICALM	2	0	AC131097.3	5844	chr2:242908198:+	PICALM	12733	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	AC131097.3->chr2:242823514-243020873:+,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	1	0	1	1	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASCC3--AHI1	2	0	ASCC3	14892	chr6:101214441:-	AHI1	71037	chr6:135754394:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ASCC3->activating_signal_cointegrator_1_complex_subunit_3,chr6:100956070-101329248:-,AHI1->Abelson_helper_integration_site_1,Oncogene{Bushman},chr6:135604670-135818914:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP2B4--ASRGL1	1	4	ATP2B4	3316	chr1:203652526:+	ASRGL1	33377	chr11:62105362:+	ONLY_REF_SPLICE	YES	8	5	0.38	0.5	0.0121	0.0484	{Klijn_CCL:Lymphoid=1},ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.5	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BACH1--TRIM24	2	0	BACH1	13390	chr21:30702014:+	TRIM24	34462	chr7:138223402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	BACH1->BTB_domain_and_CNC_homolog_1,chr21:30566392-31003071:+,TRIM24->Oncogene{Bushman},chr7:138145079-138274738:+,tripartite_motif_containing_24	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C12orf10--SOCS4	2	0	C12orf10	1577	chr12:53694046:+	SOCS4	11536	chr14:55509670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	C12orf10->chr12:53693470-53700961:+,chromosome_12_open_reading_frame_10,SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--PDIA3	2	0	C15orf57	2548	chr15:40854971:-	PDIA3	26031	chr15:44055275:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,PDIA3->chr15:44038590-44065477:+,protein_disulfide_isomerase_family_A_member_3	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C8orf44--DDX39B	2	0	C8orf44	1087	chr8:67579936:+	DDX39B	19371	chr6:31500688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	C8orf44->chr8:67579850-67597799:+,chromosome_8_open_reading_frame_44,DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CENPK--TUBGCP5	2	0	CENPK	8569	chr5:64838629:-	TUBGCP5	27286	chr15:22848875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CENPK->centromere_protein_K,chr5:64813593-64858998:-,TUBGCP5->chr15:22833395-22873892:+,tubulin_gamma_complex_associated_protein_5	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLTC--YPEL2	2	0	CLTC	1316	chr17:57697534:+	YPEL2	46435	chr17:57474462:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,YPEL2->chr17:57409050-57479090:+,yippee_like_2	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COPS6--RBM25	2	0	COPS6	1793	chr7:99687369:+	RBM25	30825	chr14:73586421:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	COPS6->COP9_signalosome_subunit_6,chr7:99686577-99689823:+,RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CORO2A--RPSA	2	0	CORO2A	7841	chr9:100894467:-	RPSA	25735	chr3:39453387:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CORO2A->Oncogene{Bushman},chr9:100883257-100954922:-,coronin_2A,RPSA->chr3:39448180-39454033:+,ribosomal_protein_SA	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DAK--FAIM3	2	0	DAK	6309	chr11:61106648:+	FAIM3	27906	chr1:207078492:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	DAK->chr11:61100682-61120767:+,FAIM3->chr1:207077731-207096592:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCLRE1B--CSDE1	2	0	DCLRE1B	1635	chr1:114448397:+	CSDE1	19836	chr1:115280693:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	DCLRE1B->DNA_cross-link_repair_1B,chr1:114447763-114456708:+,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX26B--P2RY11	2	0	DDX26B	1660	chrX:134655243:+	P2RY11	24699	chr19:10224309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	DDX26B->chrX:134654584-134716435:+,P2RY11->chr19:10222214-10226048:+,purinergic_receptor_P2Y11	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND4B--PPFIBP1	2	0	DENND4B	15426	chr1:153904680:-	PPFIBP1	34490	chr12:27802943:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	DENND4B->DENN_domain_containing_4B,chr1:153901977-153919172:-,PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DMXL1--COMMD10	2	0	DMXL1	3678	chr5:118407351:+	COMMD10	66429	chr5:115627214:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	DMXL1->Dmx_like_1,chr5:118373467-118584833:+,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF5--C14orf2	2	0	EIF5	3574	chr14:103802454:+	C14orf2	21879	chr14:104379031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	EIF5->chr14:103799881-103811362:+,eukaryotic_translation_initiation_factor_5,C14orf2->chr14:104378625-104394606:-,chromosome_14_open_reading_frame_2	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMFG--RNF166	2	0	GMFG	4056	chr19:39823717:-	RNF166	12832	chr16:88767826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GMFG->chr19:39818993-39833012:-,glia_maturation_factor_gamma,RNF166->chr16:88762903-88772829:-,ring_finger_protein_166	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRK6--CLPTM1L	2	0	GRK6	2354	chr5:176831558:+	CLPTM1L	25851	chr5:1330498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GRK6->G_protein-coupled_receptor_kinase_6,chr5:176830205-176869902:+,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBE1--CSTF3	2	0	HBE1	1049	chr11:5526799:-	CSTF3	12173	chr11:33163532:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1,CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCLS1--EAF2	2	0	HCLS1	1108	chr3:121379667:-	EAF2	26372	chr3:121591384:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1,EAF2->ELL_associated_factor_2,chr3:121554030-121605373:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--PAPD4	2	0	IGLL5	1480	chr22:23230439:+	PAPD4	22691	chr5:78964715:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,PAPD4->PAP_associated_domain_containing_4,chr5:78907943-78982471:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITCH--ASIP	2	0	ITCH	1115	chr20:32951155:+	ASIP	35434	chr20:32848171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUAD:1|LUSC:1|OV:1],LOCAL_REARRANGEMENT:+:[93891],ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	2	0	1	2	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KTN1--OTX2-AS1	2	0	KTN1	9501	chr14:56086030:+	OTX2-AS1	61473	chr14:57395598:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1,OTX2-AS1->OTX2_antisense_RNA_1_(head_to_head),chr14:57279901-57618895:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LRRC61--FARSB	2	0	LRRC61	3950	chr7:150023099:+	FARSB	17315	chr2:223499260:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	LRRC61->chr7:150019728-150035239:+,leucine_rich_repeat_containing_61,FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBNL1--GMPS	2	0	MBNL1	3666	chr3:151986881:+	GMPS	32815	chr3:155621652:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,GMPS->Oncogene{Bushman},chr3:155588325-155661815:+,guanine_monophosphate_synthase	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRCAM--USP3	2	0	NRCAM	5499	chr7:107953109:-	USP3	54376	chr15:63834254:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule,USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--USP28	2	0	PROSC	2996	chr8:37623873:+	USP28	22790	chr11:113701665:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),USP28->chr11:113668596-113746292:-,ubiquitin_specific_peptidase_28	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTBP2--HMGB3	2	0	PTBP2	1208	chr1:97187428:+	HMGB3	30833	chrX:150154068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,HMGB3->chrX:150148982-150159248:+,high_mobility_group_box_3	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REL--CCT4	2	0	REL	1330	chr2:61108985:+	CCT4	32371	chr2:62099451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	REL->Oncogene{Bushman},REL_proto-oncogene,_NF-kB_subunit,chr2:61108656-61158745:+,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFWD3--MLLT10	2	0	RFWD3	1096	chr16:74700684:-	MLLT10	45387	chr10:22002701:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RFWD3->chr16:74655292-74700779:-,ring_finger_and_WD_repeat_domain_3,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL22--ALDH16A1	2	0	RPL22	8153	chr1:6252990:-	ALDH16A1	19823	chr19:49965141:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,ALDH16A1->aldehyde_dehydrogenase_16_family_member_A1,chr19:49956426-49974305:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--PTMA	2	0	RPS3	2292	chr11:75111821:+	PTMA	17949	chr2:232576600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6KA5--EFCAB11	2	0	RPS6KA5	7274	chr14:91409422:-	EFCAB11	44664	chr14:90263668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RPS6KA5->chr14:91336799-91526980:-,ribosomal_protein_S6_kinase_A5,EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC16A10--CDK19	2	0	SLC16A10	1518	chr6:111409298:+	CDK19	26247	chr6:111095140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SLC16A10->chr6:111408781-111552397:+,solute_carrier_family_16_member_10,CDK19->chr6:110931181-111137161:-,cyclin-dependent_kinase_19	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMOC1--LIMD1	2	0	SMOC1	7046	chr14:70420249:+	LIMD1	31364	chr3:45714182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SMOC1->SPARC_related_modular_calcium_binding_1,chr14:70320848-70499083:+,LIMD1->LIM_domains_containing_1,Oncogene{Bushman},chr3:45596886-45727830:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM222--WASF2	2	0	TMEM222	1232	chr1:27648882:+	WASF2	12087	chr1:27755443:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_INVERSION:+:-:[67839],TMEM222->chr1:27648651-27662891:+,transmembrane_protein_222,WASF2->Oncogene{Bushman},WAS_protein_family_member_2,chr1:27730730-27816669:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--MTIF2	2	0	ZNF121	3783	chr19:9678324:-	MTIF2	20151	chr2:55479789:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,MTIF2->chr2:55463731-55496483:-,mitochondrial_translational_initiation_factor_2	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
AM38_CENTRAL_NERVOUS_SYSTEM	YWHAE--SMG6	186	118	YWHAE	1332	chr17:1303341:-	SMG6	41016	chr17:1989195:-	ONLY_REF_SPLICE	YES	1742	30	0.15	0.91	1.7279	1.0962	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.15	0.91	2.8241	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	PRCP--BCO2	160	40	PRCP	18059	chr11:82549429:-	BCO2	36373	chr11:112088484:+	ONLY_REF_SPLICE	YES	69	1	0.74	1	1.4864	0.3716	PRCP->chr11:82534544-82681626:-,prolylcarboxypeptidase,BCO2->beta-carotene_oxygenase_2,chr11:112046190-112095422:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.74	1	1.858	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	MAML2--YAP1	77	16	MAML2	2798	chr11:96074547:-	YAP1	24326	chr11:102094353:+	ONLY_REF_SPLICE	YES	3	137	0.97	0.4	0.7153	0.1486	MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.4	0.97	0.8639	TRUE	0	1	0	1	1	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	PLK4--KIAA1109	74	25	PLK4	3358	chr4:128804708:+	KIAA1109	76703	chr4:123222455:+	ONLY_REF_SPLICE	YES	52	22	0.66	0.82	0.6874	0.2322	PLK4->chr4:128802016-128820350:+,polo_like_kinase_4,KIAA1109->KIAA1109,chr4:123073488-123283913:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.66	0.82	0.9196	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	YAP1--MAML2	68	41	YAP1	8159	chr11:102076805:+	MAML2	22480	chr11:95826681:-	ONLY_REF_SPLICE	YES	119	3	0.48	0.97	0.6317	0.3809	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	AM38_CENTRAL_NERVOUS_SYSTEM	0.48	0.97	1.0126	TRUE	0	1	0	2	1	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	CMTM4--WDR59	54	14	CMTM4	2545	chr16:66670308:-	WDR59	38037	chr16:74943815:-	ONLY_REF_SPLICE	YES	20	21	0.77	0.76	0.5017	0.1301	CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.76	0.77	0.6318	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	YWHAE--SMG6	3	119	YWHAE	1332	chr17:1303341:-	SMG6	39911	chr17:1990473:-	INCL_NON_REF_SPLICE	YES	1742	35	0.07	0.78	0.0279	1.1055	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.07	0.78	1.1334	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	YAP1--MAML2	15	42	YAP1	8171	chr11:102076817:+	MAML2	22480	chr11:95826681:-	ONLY_REF_SPLICE	YES	149	3	0.28	0.95	0.1393	0.3902	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	AM38_CENTRAL_NERVOUS_SYSTEM	0.28	0.95	0.5295	TRUE	0	1	0	2	1	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	YAP1--MAML2	11	42	YAP1	9219	chr11:102080295:+	MAML2	22480	chr11:95826681:-	ONLY_REF_SPLICE	YES	149	3	0.26	0.95	0.1022	0.3902	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	AM38_CENTRAL_NERVOUS_SYSTEM	0.26	0.95	0.4924	TRUE	0	1	0	2	1	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-115J23.1--RP11-22P4.1	16	17	RP11-115J23.1	2304	chr11:28763455:+	RP11-22P4.1	14731	chr11:28548025:+	ONLY_REF_SPLICE	YES	23	0	0.59	1	0.1486	0.1579	RP11-115J23.1->chr11:28724162-29085368:+,RP11-22P4.1->chr11:28373654-28548588:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.59	1	0.3065	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-115J23.1--RP11-22P4.1	15	17	RP11-115J23.1	2304	chr11:28763455:+	RP11-22P4.1	14728	chr11:28548022:+	INCL_NON_REF_SPLICE	YES	23	0	0.58	1	0.1393	0.1579	RP11-115J23.1->chr11:28724162-29085368:+,RP11-22P4.1->chr11:28373654-28548588:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.58	1	0.2972	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	EPN2--AC004448.5	13	3	EPN2	25627	chr17:19232960:+	AC004448.5	42418	chr17:19342787:-	ONLY_REF_SPLICE	YES	25	0	0.39	1	0.1208	0.0279	EPN2->chr17:19118928-19240028:+,epsin_2,AC004448.5->chr17:19342456-19364308:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.1487	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	3	20	AP003900.6	1122	chr21:11169841:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0279	0.1858	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.2137	TRUE	0	0	0	11	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	CMTM4--WDR59	4	9	CMTM4	2545	chr16:66670308:-	WDR59	38297	chr16:74943555:-	ONLY_REF_SPLICE	YES	20	45	0.39	0.22	0.0372	0.0836	CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.22	0.39	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AC027612.3--AP000345.1	5	1	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0464	0.0093	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.0557	TRUE	0	0	0	11	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	CTD-2544M6.1--LINC00923	4	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	10269	chr15:98301891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0372	TRUE	0	3	0	6	3	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RPL12--WDR36	4	0	RPL12	3125	chr9:130211560:-	WDR36	10998	chr5:110432777:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	RPL12->chr9:130209953-130213684:-,ribosomal_protein_L12,WDR36->WD_repeat_domain_36,chr5:110427414-110466200:+	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	EPN2--AC004448.5	3	3	EPN2	25627	chr17:19232960:+	AC004448.5	38151	chr17:19356188:-	INCL_NON_REF_SPLICE	YES	25	0	0.19	1	0.0279	0.0279	EPN2->chr17:19118928-19240028:+,epsin_2,AC004448.5->chr17:19342456-19364308:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.0558	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AP001432.14--TTC3	3	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	0	0	0	15	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	FOSL1--DRAP1	3	0	FOSL1	1333	chr11:65667712:-	DRAP1	9128	chr11:65687251:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_INVERSION:-:+:[18684],FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	0	0	0	6	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	VIM--RPS28	3	0	VIM	2129	chr10:17271386:+	RPS28	12568	chr19:8386405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	0	0	0	4	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	VIM--RPS28	3	0	VIM	2142	chr10:17271399:+	RPS28	12589	chr19:8386426:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	0	0	0	4	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	VIM--RPS28	3	0	VIM	2119	chr10:17271376:+	RPS28	12550	chr19:8386387:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	0	0	0	4	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AC027612.3--AP000345.1	2	1	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0.0093	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	0	0	0	11	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	EXT2--PLK1S1	2	0	EXT2	17809	chr11:44228509:+	PLK1S1	34659	chr20:21195173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2,PLK1S1->Oncogene{Bushman},chr20:21106624-21227260:+	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	MYO1C--GALK1	2	0	MYO1C	2213	chr17:1394894:-	GALK1	28235	chr17:73760167:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	MYO1C->chr17:1367392-1396106:-,myosin_IC,GALK1->chr17:73747675-73761792:-,galactokinase_1	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-761E20.1--PLS3	1	1	RP11-761E20.1	1129	chrX:115085294:-	PLS3	10293	chrX:114844555:+	ONLY_REF_SPLICE	YES	0	29	1	0.06	0.0093	0.0093	RP11-761E20.1->chrX:115033604-115085422:-,PLS3->chrX:114795501-114885181:+,plastin_3	AM38_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0186	TRUE	0	0	0	2	0	TRUE	ACH-000269
CAL33_UPPER_AERODIGESTIVE_TRACT	C9orf3--WNK2	284	124	C9orf3	24370	chr9:97767898:+	WNK2	70284	chr9:96070610:+	ONLY_REF_SPLICE	YES	190	44	0.68	0.9	2.2056	0.963	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.68	0.9	3.1686	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	C9orf3--WNK2	49	34	C9orf3	24370	chr9:97767898:+	WNK2	74184	chr9:96079802:+	ONLY_REF_SPLICE	YES	190	67	0.3	0.55	0.3805	0.2641	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.3	0.55	0.6446	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	CDH3--HAS3	54	11	CDH3	11140	chr16:68719253:+	HAS3	22539	chr16:69139588:+	INCL_NON_REF_SPLICE	YES	443	7	0.13	0.9	0.4194	0.0854	CDH3->cadherin_3,chr16:68670092-68756519:+,HAS3->chr16:69139467-69152622:+,hyaluronan_synthase_3	CAL33_UPPER_AERODIGESTIVE_TRACT	0.13	0.9	0.5048	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	C9orf3--WNK2	12	131	C9orf3	24370	chr9:97767898:+	WNK2	68733	chr9:96069059:+	ONLY_REF_SPLICE	YES	190	29	0.43	0.83	0.0932	1.0174	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.43	0.83	1.1106	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	ABCA2--RP11-613M10.9	20	5	ABCA2	1841	chr9:139922527:-	RP11-613M10.9	24604	chr9:38016128:-	ONLY_REF_SPLICE	YES	41	37	0.38	0.4	0.1553	0.0388	ABCA2->ATP_binding_cassette_subfamily_A_member_2,chr9:139901686-139923367:-,RP11-613M10.9->chr9:37588410-38068684:-	CAL33_UPPER_AERODIGESTIVE_TRACT	0.38	0.4	0.1941	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	CDH3--HAS3	18	12	CDH3	11140	chr16:68719253:+	HAS3	22519	chr16:69139568:+	INCL_NON_REF_SPLICE	YES	443	0	0.06	1	0.1398	0.0932	CDH3->cadherin_3,chr16:68670092-68756519:+,HAS3->chr16:69139467-69152622:+,hyaluronan_synthase_3	CAL33_UPPER_AERODIGESTIVE_TRACT	0.06	1	0.233	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MID1--RP11-347C12.2	13	6	MID1	10136	chrX:10463624:-	RP11-347C12.2	25970	chr16:30317274:-	ONLY_REF_SPLICE	YES	0	15	1	0.56	0.101	0.0466	MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1,RP11-347C12.2->chr16:30234230-30346695:-	CAL33_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.1476	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	NCOA6--DLG1	8	2	NCOA6	17363	chr20:33334611:-	DLG1	40127	chr3:196921460:-	ONLY_REF_SPLICE	YES	54	85	0.16	0.11	0.0621	0.0155	NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	CAL33_UPPER_AERODIGESTIVE_TRACT	0.11	0.16	0.0776	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	CORO2A--C9orf3	8	0	CORO2A	3541	chr9:100919742:-	C9orf3	31587	chr9:97686268:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0621	0	CORO2A->Oncogene{Bushman},chr9:100883257-100954922:-,coronin_2A,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	8	0	MIR205HG	4485	chr1:209605649:+	GLS	8066	chr2:191745599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	8	0	MIR205HG	4488	chr1:209605652:+	GLS	8066	chr2:191745599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	8	0	MIR205HG	4482	chr1:209605646:+	GLS	8066	chr2:191745599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	TIRAP--KIRREL3	8	0	TIRAP	1089	chr11:126153048:+	KIRREL3	15994	chr11:126432807:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0621	0	TIRAP->chr11:126152960-126168740:+,toll-interleukin_1_receptor_(TIR)_domain_containing_adaptor_protein,KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila)	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	7	0	MIR205HG	4479	chr1:209605643:+	GLS	8066	chr2:191745599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	6	0	MIR205HG	4470	chr1:209605634:+	GLS	8063	chr2:191745596:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	5	0	MIR205HG	4476	chr1:209605640:+	GLS	8066	chr2:191745599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	C9orf3--WNK2	1	11	C9orf3	24370	chr9:97767898:+	WNK2	76873	chr9:96082649:+	ONLY_REF_SPLICE	NO	190	23	0.06	0.34	0.0078	0.0854	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.06	0.34	0.0932	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--EML2	3	0	MIR205HG	1262	chr1:209602426:+	EML2	20078	chr19:46132010:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,EML2->chr19:46110252-46148887:-,echinoderm_microtubule_associated_protein_like_2	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	3	0	MIR205HG	4491	chr1:209605655:+	GLS	8066	chr2:191745599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	CORO2A--C9orf3	2	0	CORO2A	3541	chr9:100919742:-	C9orf3	38526	chr9:97717459:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	CORO2A->Oncogene{Bushman},chr9:100883257-100954922:-,coronin_2A,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	GRAMD2--PKM	2	0	GRAMD2	1055	chr15:72490072:-	PKM	24728	chr15:72511451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	LOCAL_REARRANGEMENT:-:[1244],GRAMD2->GRAM_domain_containing_2,chr15:72452148-72490126:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	2	0	MIR205HG	4006	chr1:209605170:+	GLS	12081	chr2:191765290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MTIF3--CD46	2	0	MTIF3	2820	chr13:28019225:-	CD46	19489	chr1:207943666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	MTIF3->chr13:28009776-28024739:-,mitochondrial_translational_initiation_factor_3,CD46->CD46_molecule,Oncogene{Bushman},chr1:207925402-207968858:+	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	ATRX--MAGT1	1	1	ATRX	1235	chrX:77041468:-	MAGT1	57508	chrX:77086392:-	ONLY_REF_SPLICE	YES	46	109	0.04	0.02	0.0078	0.0078	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[40159],ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,MAGT1->chrX:77081861-77151090:-,magnesium_transporter_1	CAL33_UPPER_AERODIGESTIVE_TRACT	0.02	0.04	0.0156	TRUE	0	2	0	1	2	TRUE	ACH-000518
HS739T_FIBROBLAST	VIM--TPM2	3	0	VIM	2152	chr10:17271409:+	TPM2	13396	chr9:35689826:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS739T_FIBROBLAST	1	1	0.0372	TRUE	0	0	0	8	0	TRUE	ACH-000413
HS739T_FIBROBLAST	VIM--TPM2	3	0	VIM	2142	chr10:17271399:+	TPM2	13302	chr9:35689920:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS739T_FIBROBLAST	1	1	0.0372	TRUE	0	0	0	8	0	TRUE	ACH-000413
HS739T_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS739T_FIBROBLAST	1	1	0.0372	TRUE	0	0	0	8	0	TRUE	ACH-000413
HS739T_FIBROBLAST	ATL2--HNRNPLL	1	1	ATL2	6688	chr2:38570410:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	30	66	0.06	0.03	0.0124	0.0124	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HS739T_FIBROBLAST	0.03	0.06	0.0248	TRUE	0	5	0	8	2	TRUE	ACH-000413
QGP1_PANCREAS	SRSF4--OS9	457	219	SRSF4	1342	chr1:29508158:-	OS9	17831	chr12:58109543:+	ONLY_REF_SPLICE	YES	104	893	0.87	0.43	4.6452	2.2261	SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	QGP1_PANCREAS	0.43	0.87	6.8713	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	SLC38A2--PTMA	123	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2502	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	QGP1_PANCREAS	1	1	1.2502	TRUE	0	0	0	10	0	TRUE	ACH-000347
QGP1_PANCREAS	KDM6A--RP11-245M24.1	78	48	KDM6A	1477	chrX:44733233:+	RP11-245M24.1	43388	chrX:45461542:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.7928	0.4879	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,RP11-245M24.1->chrX:45364633-45489447:+	QGP1_PANCREAS	1	1	1.2807	TRUE	0	1	0	1	1	TRUE	ACH-000347
QGP1_PANCREAS	SLC16A7--CCDC60	68	57	SLC16A7	7982	chr12:60098799:+	CCDC60	27755	chr12:119866488:+	ONLY_REF_SPLICE	YES	30	0	0.81	1	0.6912	0.5794	SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7,CCDC60->chr12:119772517-119978852:+,coiled-coil_domain_containing_60	QGP1_PANCREAS	0.81	1	1.2706	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	STXBP5--RP11-307P5.1	47	44	STXBP5	25692	chr6:147674509:+	RP11-307P5.1	39403	chr6:148054865:+	ONLY_REF_SPLICE	YES	43	0	0.68	1	0.4777	0.4472	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-307P5.1->chr6:147981839-148275073:+	QGP1_PANCREAS	0.68	1	0.9249	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	PRR4--STYK1	30	29	PRR4	1192	chr12:11324021:-	STYK1	37764	chr12:10772947:-	ONLY_REF_SPLICE	YES	41	71	0.59	0.45	0.3049	0.2948	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),STYK1->chr12:10771538-10826917:-,serine/threonine/tyrosine_kinase_1	QGP1_PANCREAS	0.45	0.59	0.5997	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	PRR4--MAGOHB	31	22	PRR4	1192	chr12:11324021:-	MAGOHB	26320	chr12:10763279:-	ONLY_REF_SPLICE	YES	41	199	0.56	0.21	0.3151	0.2236	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),MAGOHB->chr12:10758612-10766222:-,mago_homolog_B,_exon_junction_complex_core_component	QGP1_PANCREAS	0.21	0.56	0.5387	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	TTLL7--RP11-486G15.2	20	20	TTLL7	1220	chr1:84464614:-	RP11-486G15.2	39127	chr1:84543325:-	INCL_NON_REF_SPLICE	YES	105	11	0.28	0.78	0.2033	0.2033	LOCAL_REARRANGEMENT:-:[77181],TTLL7->chr1:84330711-84464833:-,tubulin_tyrosine_ligase_like_7,RP11-486G15.2->chr1:84542014-84543614:-	QGP1_PANCREAS	0.28	0.78	0.4066	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-123O10.4--DYRK2	16	14	RP11-123O10.4	1113	chr12:67462830:-	DYRK2	10033	chr12:68050886:+	ONLY_REF_SPLICE	YES	0	370	1	0.07	0.1626	0.1423	RP11-123O10.4->chr12:67285656-67462942:-,DYRK2->chr12:68042118-68059186:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_2	QGP1_PANCREAS	0.07	1	0.3049	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	SLC16A7--CCDC60	2	57	SLC16A7	11629	chr12:60129769:+	CCDC60	27755	chr12:119866488:+	ONLY_REF_SPLICE	YES	32	0	0.65	1	0.0203	0.5794	SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7,CCDC60->chr12:119772517-119978852:+,coiled-coil_domain_containing_60	QGP1_PANCREAS	0.65	1	0.5997	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	KDM6A--RP11-245M24.1	2	50	KDM6A	1477	chrX:44733233:+	RP11-245M24.1	35746	chrX:45369742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0.5082	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,RP11-245M24.1->chrX:45364633-45489447:+	QGP1_PANCREAS	1	1	0.5285	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	KDM6A--RP11-245M24.1	2	50	KDM6A	1477	chrX:44733233:+	RP11-245M24.1	36845	chrX:45380853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0.5082	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,RP11-245M24.1->chrX:45364633-45489447:+	QGP1_PANCREAS	1	1	0.5285	TRUE	0	1	0	1	1	TRUE	ACH-000347
QGP1_PANCREAS	STXBP5--RP11-307P5.1	8	26	STXBP5	25692	chr6:147674509:+	RP11-307P5.1	40486	chr6:148058453:+	ONLY_REF_SPLICE	YES	43	1	0.44	0.97	0.0813	0.2643	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-307P5.1->chr6:147981839-148275073:+	QGP1_PANCREAS	0.44	0.97	0.3456	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	KDM6A--RP11-245M24.1	12	6	KDM6A	1477	chrX:44733233:+	RP11-245M24.1	45145	chrX:45489318:+	ONLY_REF_SPLICE	YES	0	5	1	0.78	0.122	0.061	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,RP11-245M24.1->chrX:45364633-45489447:+	QGP1_PANCREAS	0.78	1	0.183	TRUE	0	1	0	1	1	TRUE	ACH-000347
QGP1_PANCREAS	STXBP5--RP11-307P5.1	1	47	STXBP5	25692	chr6:147674509:+	RP11-307P5.1	37232	chr6:147997211:+	ONLY_REF_SPLICE	YES	43	0	0.53	1	0.0102	0.4777	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-307P5.1->chr6:147981839-148275073:+	QGP1_PANCREAS	0.53	1	0.4879	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	AC011747.4--AC011747.6	10	7	AC011747.4	4586	chr2:8717041:-	AC011747.6	19130	chr2:8747931:-	ONLY_REF_SPLICE	YES	38	0	0.31	1	0.1016	0.0712	LOCAL_REARRANGEMENT:-:[17100],AC011747.4->chr2:8699963-8723922:-,AC011747.6->chr2:8741022-8763072:-	QGP1_PANCREAS	0.31	1	0.1728	TRUE	0	1	0	1	1	TRUE	ACH-000347
QGP1_PANCREAS	STXBP5--RP11-307P5.1	2	33	STXBP5	23435	chr6:147655358:+	RP11-307P5.1	39403	chr6:148054865:+	ONLY_REF_SPLICE	YES	64	0	0.35	1	0.0203	0.3354	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-307P5.1->chr6:147981839-148275073:+	QGP1_PANCREAS	0.35	1	0.3557	TRUE	0	1	0	1	1	TRUE	ACH-000347
QGP1_PANCREAS	CALCA--RPS28	8	0	CALCA	1049	chr11:14993852:-	RPS28	9980	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0813	0	CALCA->Oncogene{Bushman},calcitonin_related_polypeptide_alpha,chr11:14988214-14993900:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	QGP1_PANCREAS	1	1	0.0813	TRUE	0	0	0	2	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-123O10.4--DYRK2	4	15	RP11-123O10.4	1113	chr12:67462830:-	DYRK2	6652	chr12:68043577:+	ONLY_REF_SPLICE	YES	0	113	1	0.14	0.0407	0.1525	RP11-123O10.4->chr12:67285656-67462942:-,DYRK2->chr12:68042118-68059186:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_2	QGP1_PANCREAS	0.14	1	0.1932	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	SLC6A6--RP11-708B6.2	6	7	SLC6A6	3615	chr3:14457961:+	RP11-708B6.2	29350	chr11:109286897:-	ONLY_REF_SPLICE	YES	34	0	0.28	1	0.061	0.0712	SLC6A6->chr3:14444076-14530857:+,solute_carrier_family_6_member_6,RP11-708B6.2->chr11:109225812-109454633:-	QGP1_PANCREAS	0.28	1	0.1322	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	KDM6A--RP11-245M24.1	4	11	KDM6A	1477	chrX:44733233:+	RP11-245M24.1	44531	chrX:45488704:+	ONLY_REF_SPLICE	YES	0	2	1	0.88	0.0407	0.1118	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,RP11-245M24.1->chrX:45364633-45489447:+	QGP1_PANCREAS	0.88	1	0.1525	TRUE	0	1	0	1	1	TRUE	ACH-000347
QGP1_PANCREAS	RAP1B--AC068535.4	6	0	RAP1B	15072	chr12:69053773:+	AC068535.4	19991	chr2:105121504:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,AC068535.4->chr2:105104916-105126967:-	QGP1_PANCREAS	1	1	0.061	TRUE	0	0	0	4	0	TRUE	ACH-000347
QGP1_PANCREAS	CCDC91--CRTC3	4	6	CCDC91	27013	chr12:28702063:+	CRTC3	38160	chr15:91136868:+	ONLY_REF_SPLICE	YES	135	48	0.07	0.17	0.0407	0.061	{Klijn_CCL:Pancreas=1},CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,CRTC3->CREB_regulated_transcription_coactivator_3,Oncogene{Bushman},chr15:91073157-91188577:+	QGP1_PANCREAS	0.07	0.17	0.1017	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	STXBP5--RP11-307P5.1	1	18	STXBP5	23435	chr6:147655358:+	RP11-307P5.1	40486	chr6:148058453:+	ONLY_REF_SPLICE	YES	64	1	0.23	0.95	0.0102	0.183	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-307P5.1->chr6:147981839-148275073:+	QGP1_PANCREAS	0.23	0.95	0.1932	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-686O6.2--MPP4	4	4	RP11-686O6.2	1438	chr2:203239890:-	MPP4	6440	chr2:202558777:-	INCL_NON_REF_SPLICE	YES	7	0	0.53	1	0.0407	0.0407	RP11-686O6.2->chr2:203239655-203240327:-,MPP4->chr2:202509593-202563417:-,membrane_palmitoylated_protein_4	QGP1_PANCREAS	0.53	1	0.0814	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	AC011747.4--AC011747.6	2	10	AC011747.4	5720	chr2:8710578:-	AC011747.6	19130	chr2:8747931:-	ONLY_REF_SPLICE	YES	21	0	0.36	1	0.0203	0.1016	LOCAL_REARRANGEMENT:-:[17100],AC011747.4->chr2:8699963-8723922:-,AC011747.6->chr2:8741022-8763072:-	QGP1_PANCREAS	0.36	1	0.1219	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-785H5.2--STYK1	3	2	RP11-785H5.2	1087	chr12:11323866:-	STYK1	18814	chr12:10772947:-	ONLY_REF_SPLICE	YES	0	71	1	0.07	0.0305	0.0203	RP11-785H5.2->chr12:11318689-11323952:-,STYK1->chr12:10771538-10826917:-,serine/threonine/tyrosine_kinase_1	QGP1_PANCREAS	0.07	1	0.0508	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RABGAP1L--RP11-669M2.1	2	5	RABGAP1L	36540	chr1:174846743:+	RP11-669M2.1	56879	chr1:188504887:+	ONLY_REF_SPLICE	YES	151	0	0.04	1	0.0203	0.0508	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,RP11-669M2.1->chr1:188477669-188505596:+	QGP1_PANCREAS	0.04	1	0.0711	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	IMMP1L--ELP4	3	0	IMMP1L	1127	chr11:31531066:-	ELP4	22162	chr11:31616317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	LOCAL_INVERSION:-:+:[105],IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1,ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4	QGP1_PANCREAS	1	1	0.0305	TRUE	0	0	0	2	0	TRUE	ACH-000347
QGP1_PANCREAS	RTN4RL2--FAM111A	2	1	RTN4RL2	1348	chr11:57228369:+	FAM111A	13698	chr11:58916309:+	ONLY_REF_SPLICE	YES	5	57	0.38	0.05	0.0203	0.0102	RTN4RL2->chr11:57228022-57245007:+,reticulon_4_receptor-like_2,FAM111A->chr11:58910221-58922512:+,family_with_sequence_similarity_111_member_A	QGP1_PANCREAS	0.05	0.38	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	ATP2B1--AGK	2	0	ATP2B1	1082	chr12:90102996:-	AGK	33574	chr7:141292946:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ATP2B1->ATPase_plasma_membrane_Ca2+_transporting_1,chr12:89981828-90103077:-,AGK->acylglycerol_kinase,chr7:141250989-141355044:+	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	CHM--MTX2	2	0	CHM	5114	chrX:85233771:-	MTX2	29107	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CHM->CHM,_Rab_escort_protein_1,chrX:85116185-85302566:-,MTX2->chr2:177134123-177202753:+,metaxin_2	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	DLGAP1-AS1--MPPE1	2	0	DLGAP1-AS1	1509	chr18:3594238:+	MPPE1	19119	chr18:11889489:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	DLGAP1-AS1->DLGAP1_antisense_RNA_1,chr18:3593730-3598350:+,MPPE1->Oncogene{Bushman},chr18:11882621-11909222:-,metallophosphoesterase_1	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	ELP4--IMMP1L	2	0	ELP4	2294	chr11:31541638:+	IMMP1L	25447	chr11:31477933:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:+:-:[105],ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	PDE1C--CCDC50	2	0	PDE1C	34090	chr7:31815278:-	CCDC50	48132	chr3:191097948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	PDE1C->chr7:31790793-32338941:-,phosphodiesterase_1C,CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RCC1--RALYL	2	0	RCC1	2175	chr1:28834672:+	RALYL	23357	chr8:85441534:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-357C3.3--ARHGEF9	2	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	31030	chrX:62875617:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	QGP1_PANCREAS	1	1	0.0203	TRUE	0	1	0	2	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-6N17.4--FAM134C	2	0	RP11-6N17.4	2913	chr17:45971266:-	FAM134C	13662	chr17:40744180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RP11-6N17.4->chr17:45968621-45973178:-,FAM134C->chr17:40731531-40762641:-,family_with_sequence_similarity_134_member_C	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	ZNF567--PPP6R1	2	0	ZNF567	2173	chr19:37180399:+	PPP6R1	29358	chr19:55743579:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ZNF567->chr19:37178514-37218603:+,zinc_finger_protein_567,PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RTN4RL2--FAM111A	1	3	RTN4RL2	1348	chr11:57228369:+	FAM111A	12077	chr11:58913300:+	ONLY_REF_SPLICE	YES	5	21	0.44	0.16	0.0102	0.0305	RTN4RL2->chr11:57228022-57245007:+,reticulon_4_receptor-like_2,FAM111A->chr11:58910221-58922512:+,family_with_sequence_similarity_111_member_A	QGP1_PANCREAS	0.16	0.44	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RTN4RL2--FAM111A	1	2	RTN4RL2	1348	chr11:57228369:+	FAM111A	13566	chr11:58916177:+	ONLY_REF_SPLICE	NO	5	49	0.38	0.06	0.0102	0.0203	RTN4RL2->chr11:57228022-57245007:+,reticulon_4_receptor-like_2,FAM111A->chr11:58910221-58922512:+,family_with_sequence_similarity_111_member_A	QGP1_PANCREAS	0.06	0.38	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	SLC6A6--RP11-708B6.2	1	1	SLC6A6	3615	chr3:14457961:+	RP11-708B6.2	31901	chr11:109235795:-	ONLY_REF_SPLICE	YES	34	0	0.06	1	0.0102	0.0102	SLC6A6->chr3:14444076-14530857:+,solute_carrier_family_6_member_6,RP11-708B6.2->chr11:109225812-109454633:-	QGP1_PANCREAS	0.06	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	STXBP5--RP11-307P5.1	1	1	STXBP5	25692	chr6:147674509:+	RP11-307P5.1	42774	chr6:148274466:+	ONLY_REF_SPLICE	YES	43	0	0.04	1	0.0102	0.0102	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-307P5.1->chr6:147981839-148275073:+	QGP1_PANCREAS	0.04	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000347
LOVO_LARGE_INTESTINE	EIF3J--TRIM69	252	81	EIF3J	1371	chr15:44829625:+	TRIM69	13936	chr15:45023561:+	ONLY_REF_SPLICE	YES	168	24	0.66	0.93	2.3883	0.7677	EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J,TRIM69->chr15:45021186-45060027:+,tripartite_motif_containing_69	LOVO_LARGE_INTESTINE	0.66	0.93	3.156	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	EIF3J--TRIM69	60	19	EIF3J	1371	chr15:44829625:+	TRIM69	20897	chr15:45047098:+	ONLY_REF_SPLICE	YES	168	7	0.32	0.92	0.5686	0.1801	EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J,TRIM69->chr15:45021186-45060027:+,tripartite_motif_containing_69	LOVO_LARGE_INTESTINE	0.32	0.92	0.7487	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	EEF2--EIF5A	49	0	EEF2	9074	chr19:3977238:-	EIF5A	17304	chr17:7214384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4644	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A	LOVO_LARGE_INTESTINE	1	1	0.4644	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	EIF3J--TRIM69	11	3	EIF3J	1371	chr15:44829625:+	TRIM69	26870	chr15:45059429:+	ONLY_REF_SPLICE	YES	168	37	0.08	0.27	0.1043	0.0284	EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J,TRIM69->chr15:45021186-45060027:+,tripartite_motif_containing_69	LOVO_LARGE_INTESTINE	0.08	0.27	0.1327	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	EIF3J--TRIM69	2	19	EIF3J	1371	chr15:44829625:+	TRIM69	17687	chr15:45028681:+	ONLY_REF_SPLICE	YES	168	4	0.11	0.84	0.019	0.1801	EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J,TRIM69->chr15:45021186-45060027:+,tripartite_motif_containing_69	LOVO_LARGE_INTESTINE	0.11	0.84	0.1991	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	RPS9--RPL3	5	0	RPS9	3304	chr19:54710180:+	RPL3	15341	chr22:39712801:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	RPS9->chr19:54704610-54752862:+,ribosomal_protein_S9,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	LOVO_LARGE_INTESTINE	1	1	0.0474	TRUE	0	0	0	2	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	IMMP2L--AC003088.1	4	1	IMMP2L	12890	chr7:110526649:-	AC003088.1	19914	chr7:110165618:-	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0379	0.0095	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	LOVO_LARGE_INTESTINE	0.33	1	0.0474	TRUE	1	1	0	2	1	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	EEF2--EEF1A1P5	3	0	EEF2	3540	chr19:3982928:-	EEF1A1P5	14649	chr9:135896206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,EEF1A1P5->chr9:135894816-135896553:+,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_5	LOVO_LARGE_INTESTINE	1	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	ABCC3--AC017060.1	2	0	ABCC3	1205	chr17:48712342:+	AC017060.1	34577	chr7:17523158:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+,AC017060.1->chr7:17503069-17598533:-	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	DOCK5--SH3KBP1	2	0	DOCK5	6939	chr8:25136181:+	SH3KBP1	85785	chrX:19626163:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	FBXW11--UBTD2	2	0	FBXW11	1416	chr5:171433462:-	UBTD2	28205	chr5:171661362:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx_v2:{count=3;pct=0.03%;dist=Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Cells_-_Transformed_fibroblasts=1},FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,UBTD2->chr5:171636644-171711075:-,ubiquitin_domain_containing_2	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	2	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	PTBP3--XPO6	2	0	PTBP3	3994	chr9:115060121:-	XPO6	31789	chr16:28181230:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,XPO6->chr16:28109300-28223241:-,exportin_6	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	SETD3--CCNK	2	0	SETD3	1152	chr14:99947065:-	CCNK	24374	chr14:99958963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:-:+:[290],SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CCNK->chr14:99947506-100001381:+,cyclin_K	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	ZBTB38--RNF13	2	0	ZBTB38	1244	chr3:141043298:+	RNF13	41179	chr3:149613260:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38,RNF13->chr3:149530495-149679926:+,ring_finger_protein_13	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000950
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ETV6--RP1-231P7P.1	29	4	ETV6	1307	chr12:11803094:+	RP1-231P7P.1	23341	chr22:27959883:-	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.5393	0.0744	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,RP1-231P7P.1->chr22:27959800-27969534:-	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.6137	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf48--SDCCAG8	2	0	C19orf48	3713	chr19:51305474:-	SDCCAG8	29176	chr1:243542023:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	C19orf48->chr19:51300961-51308186:-,chromosome_19_open_reading_frame_48,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2017D11.1--TMEM131	2	0	CTD-2017D11.1	3885	chr19:24232350:+	TMEM131	51012	chr2:98373846:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	CTD-2017D11.1->chr19:24216247-24249711:+,TMEM131->chr2:98372799-98612388:-,transmembrane_protein_131	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EMC3--UBE2G2	2	0	EMC3	10089	chr3:10011403:-	UBE2G2	26564	chr21:46193602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	EMC3->ER_membrane_protein_complex_subunit_3,chr3:10004221-10052800:-,UBE2G2->chr21:46188955-46221934:-,ubiquitin_conjugating_enzyme_E2_G2	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERICH1--FBXO25	2	0	ERICH1	2423	chr8:681140:-	FBXO25	34253	chr8:399990:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	ERICH1->Oncogene{Bushman},chr8:564746-688106:-,glutamate_rich_1,FBXO25->F-box_protein_25,chr8:356428-421225:+	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYST--MIER1	2	0	LYST	7339	chr1:235976271:-	MIER1	80438	chr1:67411833:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator,MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT4B--AADAT	2	0	MGAT4B	6005	chr5:179228784:-	AADAT	15094	chr4:171010887:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	MGAT4B->chr5:179224597-179233952:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_B,AADAT->aminoadipate_aminotransferase,chr4:170981373-171012850:-	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF785--ATXN2	2	0	ZNF785	3583	chr16:30593832:-	ATXN2	34914	chr12:111908546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	ZNF785->chr16:30585061-30597092:-,zinc_finger_protein_785,ATXN2->ataxin_2,chr12:111890018-112037480:-	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNTNAP2--COA1	1	1	CNTNAP2	18196	chr7:147675081:+	COA1	57376	chr7:43673007:-	ONLY_REF_SPLICE	YES	15	6	0.12	0.25	0.0186	0.0186	CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2,COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.25	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNTNAP2--COA1	1	1	CNTNAP2	18196	chr7:147675081:+	COA1	60779	chr7:43649094:-	ONLY_REF_SPLICE	YES	15	7	0.12	0.22	0.0186	0.0186	CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2,COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.22	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNTNAP2--COA1	1	1	CNTNAP2	18196	chr7:147675081:+	COA1	60633	chr7:43649240:-	ONLY_REF_SPLICE	YES	15	3	0.12	0.4	0.0186	0.0186	CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2,COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.4	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SETD3--VRK1	1	1	SETD3	1152	chr14:99947065:-	VRK1	23392	chr14:97299804:+	ONLY_REF_SPLICE	YES	26	2	0.07	0.5	0.0186	0.0186	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.5	0.0372	TRUE	0	0	0	2	0	TRUE	ACH-000084
LN235_CENTRAL_NERVOUS_SYSTEM	ADORA2B--PIGL	42	55	ADORA2B	1667	chr17:15848897:+	PIGL	12895	chr17:16203202:+	ONLY_REF_SPLICE	YES	154	45	0.39	0.68	0.5217	0.6832	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	LN235_CENTRAL_NERVOUS_SYSTEM	0.39	0.68	1.2049	TRUE	0	1	0	2	1	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	ADORA2B--PIGL	9	66	ADORA2B	1667	chr17:15848897:+	PIGL	11847	chr17:16187335:+	ONLY_REF_SPLICE	YES	154	44	0.33	0.63	0.1118	0.8198	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	LN235_CENTRAL_NERVOUS_SYSTEM	0.33	0.63	0.9316	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	RNLS--ATAD1	6	4	RNLS	7473	chr10:90074223:-	ATAD1	18161	chr10:89552512:-	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0745	0.0497	RNLS->chr10:90033621-90344287:-,renalase,_FAD-dependent_amine_oxidase,ATAD1->ATPase_family,_AAA_domain_containing_1,chr10:89511269-89601100:-	LN235_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.1242	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	ADORA2B--PIGL	1	21	ADORA2B	1667	chr17:15848897:+	PIGL	15355	chr17:16216861:+	ONLY_REF_SPLICE	NO	154	33	0.12	0.4	0.0124	0.2608	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	LN235_CENTRAL_NERVOUS_SYSTEM	0.12	0.4	0.2732	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	COL1A2--PRDX1	3	0	COL1A2	12861	chr7:94040246:+	PRDX1	37189	chr1:45987556:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PRDX1->Oncogene{Bushman},chr1:45976708-45988719:-,peroxiredoxin_1	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	2	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	AC073610.5--PRKAG1	2	0	AC073610.5	1009	chr12:49333438:-	PRKAG1	9523	chr12:49406893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_REARRANGEMENT:-:[62611],AC073610.5->chr12:49315767-49333446:-,PRKAG1->chr12:49396057-49412980:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_1	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	C1S--DYRK1A	2	0	C1S	1111	chr12:7096461:+	DYRK1A	26549	chr21:38802571:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	C1S->chr12:7096351-7178336:+,complement_component_1,_s_subcomponent,DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	FAM171A1--GNB1	2	0	FAM171A1	3428	chr10:15317854:-	GNB1	26683	chr1:1724750:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	FAM171A1->chr10:15253642-15413061:-,family_with_sequence_similarity_171_member_A1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	NUCB1--TPI1	2	0	NUCB1	6939	chr19:49416789:+	TPI1	18032	chr12:6979213:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NUCB1->chr19:49403307-49426629:+,nucleobindin_1,TPI1->chr12:6976283-6980112:+,triosephosphate_isomerase_1	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	TAGLN2--PUF60	2	0	TAGLN2	1283	chr1:159895240:-	PUF60	19494	chr8:144900704:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	TAGLN2->chr1:159887897-159895522:-,transgelin_2,PUF60->chr8:144898514-144912029:-,poly(U)_binding_splicing_factor_60KDa	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000591
SNU283_LARGE_INTESTINE	RELA--EHBP1L1	89	6	RELA	1269	chr11:65430297:-	EHBP1L1	14395	chr11:65346549:+	ONLY_REF_SPLICE	YES	13	27	0.88	0.78	1.0323	0.0696	LOCAL_INVERSION:-:+:[60946],RELA->Oncogene{Bushman},RELA_proto-oncogene,_NF-kB_subunit,chr11:65421067-65430565:-,EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+	SNU283_LARGE_INTESTINE	0.78	0.88	1.1019	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	MAN2A1--TMEM232	17	10	MAN2A1	20526	chr5:109159538:+	TMEM232	70690	chr5:109668626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1972	0.116	MAN2A1->chr5:109025067-109205326:+,mannosidase_alpha_class_2A_member_1,TMEM232->chr5:109624934-110074657:-,transmembrane_protein_232	SNU283_LARGE_INTESTINE	1	1	0.3132	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	PTPN12--SRRM3	17	2	PTPN12	1371	chr7:77166962:+	SRRM3	30102	chr7:75864346:+	ONLY_REF_SPLICE	YES	5	1	0.79	0.95	0.1972	0.0232	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	SNU283_LARGE_INTESTINE	0.79	0.95	0.2204	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	RP4-583P15.15--RTEL1	13	9	RP4-583P15.15	4647	chr20:62366916:+	RTEL1	18035	chr20:62297357:+	ONLY_REF_SPLICE	YES	108	16	0.17	0.58	0.1508	0.1044	LOCAL_REARRANGEMENT:+:[11800],RP4-583P15.15->chr20:62340216-62370456:+,RTEL1->chr20:62289163-62328416:+,regulator_of_telomere_elongation_helicase_1	SNU283_LARGE_INTESTINE	0.17	0.58	0.2552	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	MAN2A1--TMEM232	8	0	MAN2A1	20526	chr5:109159538:+	TMEM232	77290	chr5:109625141:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0928	0	MAN2A1->chr5:109025067-109205326:+,mannosidase_alpha_class_2A_member_1,TMEM232->chr5:109624934-110074657:-,transmembrane_protein_232	SNU283_LARGE_INTESTINE	1	1	0.0928	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	LMNB2--PLK5	6	1	LMNB2	1327	chr19:2456668:-	PLK5	18837	chr19:1526485:+	ONLY_REF_SPLICE	YES	145	0	0.05	1	0.0696	0.0116	LMNB2->chr19:2427636-2456994:-,lamin_B2,PLK5->chr19:1524073-1535455:+,polo_like_kinase_5	SNU283_LARGE_INTESTINE	0.05	1	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	LMNB2--PLK5	5	2	LMNB2	1327	chr19:2456668:-	PLK5	17946	chr19:1525594:+	ONLY_REF_SPLICE	YES	145	0	0.05	1	0.058	0.0232	LMNB2->chr19:2427636-2456994:-,lamin_B2,PLK5->chr19:1524073-1535455:+,polo_like_kinase_5	SNU283_LARGE_INTESTINE	0.05	1	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	RELA--EHBP1L1	4	5	RELA	1269	chr11:65430297:-	EHBP1L1	14399	chr11:65346553:+	INCL_NON_REF_SPLICE	YES	13	26	0.41	0.26	0.0464	0.058	LOCAL_INVERSION:-:+:[60946],RELA->Oncogene{Bushman},RELA_proto-oncogene,_NF-kB_subunit,chr11:65421067-65430565:-,EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+	SNU283_LARGE_INTESTINE	0.26	0.41	0.1044	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	EPC1--ITGB1	4	0	EPC1	4087	chr10:32635691:-	ITGB1	37122	chr10:33224486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	EPC1->chr10:32556679-32667726:-,enhancer_of_polycomb_homolog_1,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	SNU283_LARGE_INTESTINE	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	KIAA1432--RCL1	2	0	KIAA1432	2537	chr9:5656690:+	RCL1	35035	chr9:4823548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	KIAA1432->chr9:5629025-5776557:+,RCL1->RNA_terminal_phosphate_cyclase_like_1,chr9:4792869-4885917:+	SNU283_LARGE_INTESTINE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	RPS19--AKT2	2	0	RPS19	2294	chr19:42365281:+	AKT2	23646	chr19:40762961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	SNU283_LARGE_INTESTINE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	CTC-432M15.3--CTC-575N7.1	1	2	CTC-432M15.3	6563	chr5:130897671:-	CTC-575N7.1	40366	chr5:129116174:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0116	0.0232	CTC-432M15.3->chr5:130761584-131132676:-,CTC-575N7.1->chr5:128836054-129241610:-	SNU283_LARGE_INTESTINE	0.75	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	RABEP1--LYRM9	1	2	RABEP1	20820	chr17:5281527:+	LYRM9	35906	chr17:26207392:-	ONLY_REF_SPLICE	NO	47	15	0.06	0.17	0.0116	0.0232	RABEP1->Oncogene{Bushman},chr17:5185558-5289129:+,rabaptin,_RAB_GTPase_binding_effector_protein_1,LYRM9->LYR_motif_containing_9,chr17:26205340-26221778:-	SNU283_LARGE_INTESTINE	0.06	0.17	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	CWC27--CTC-321K16.1	1	1	CWC27	16634	chr5:64181373:+	CTC-321K16.1	27095	chr5:134964927:+	ONLY_REF_SPLICE	YES	28	0	0.07	1	0.0116	0.0116	CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+,CTC-321K16.1->chr5:134895267-134970564:+	SNU283_LARGE_INTESTINE	0.07	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	PCBD2--CTD-2410N18.5	1	1	PCBD2	3623	chr5:134246156:+	CTD-2410N18.5	20762	chr5:133509713:-	ONLY_REF_SPLICE	NO	36	0	0.05	1	0.0116	0.0116	PCBD2->chr5:134240596-134343649:+,pterin-4_alpha-carbinolamine_dehydratase_2,CTD-2410N18.5->chr5:133502861-133561762:-	SNU283_LARGE_INTESTINE	0.05	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	TMEM206--TIMM17A	1	1	TMEM206	1180	chr1:212588064:-	TIMM17A	17067	chr1:201926409:+	ONLY_REF_SPLICE	YES	31	0	0.06	1	0.0116	0.0116	TMEM206->chr1:212537273-212588243:-,transmembrane_protein_206,TIMM17A->chr1:201924619-201939789:+,translocase_of_inner_mitochondrial_membrane_17_homolog_A_(yeast)	SNU283_LARGE_INTESTINE	0.06	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU899_UPPER_AERODIGESTIVE_TRACT	NCL--PTMA	9	0	NCL	6884	chr2:232325380:-	PTMA	22009	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1108	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.1108	TRUE	1	0	0	7	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	COL17A1--WDR96	7	2	COL17A1	34650	chr10:105798829:-	WDR96	69376	chr10:105927495:-	ONLY_REF_SPLICE	YES	237	0	0.04	1	0.0862	0.0246	LOCAL_REARRANGEMENT:-:[43886],COL17A1->chr10:105791044-105845760:-,collagen_type_XVII_alpha_1,WDR96->chr10:105889646-105992120:-	SNU899_UPPER_AERODIGESTIVE_TRACT	0.04	1	0.1108	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	NCL--PTMA	6	0	NCL	6884	chr2:232325380:-	PTMA	22012	chr2:232576649:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0739	TRUE	1	0	0	7	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	DENND2C--DNAJC2	3	0	DENND2C	21172	chr1:115130337:-	DNAJC2	38330	chr7:102964072:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0369	0	DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-,DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	LAMA5--WFDC2	3	0	LAMA5	24542	chr20:60899621:-	WFDC2	44087	chr20:44098408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,WFDC2->WAP_four-disulfide_core_domain_2,chr20:44098346-44110172:+	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	PLXNA1--MTATP6P1	3	0	PLXNA1	28463	chr3:126755625:+	MTATP6P1	32361	chr1:569363:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	PLXNA1->chr3:126707437-126756235:+,plexin_A1,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	PROSER1--CTD-2192J16.15	3	0	PROSER1	1478	chr13:39611775:-	CTD-2192J16.15	20836	chr19:12754716:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	PROSER1->chr13:39584003-39612252:-,proline_and_serine_rich_1,CTD-2192J16.15->chr19:12754089-12754733:-	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	RHBDF2--RP11-284F21.10	3	0	RHBDF2	8326	chr17:74474982:-	RP11-284F21.10	19564	chr1:156614431:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),RP11-284F21.10->chr1:156611458-156614679:-	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	RP11-429J17.7--LGALS8	3	0	RP11-429J17.7	3860	chr8:144840835:-	LGALS8	11478	chr1:236689293:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	RP11-429J17.7->chr8:144840323-144853992:-,LGALS8->chr1:236681300-236716281:+,lectin,_galactoside_binding_soluble_8	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	SFPQ--ZBTB4	3	0	SFPQ	4785	chr1:35654850:-	ZBTB4	27705	chr17:7363376:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,ZBTB4->chr17:7362685-7387582:-,zinc_finger_and_BTB_domain_containing_4	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	TRAM2--PHACTR4	3	0	TRAM2	11977	chr6:52366379:-	PHACTR4	38993	chr1:28823883:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	TRAM2->chr6:52362200-52441713:-,translocation_associated_membrane_protein_2,PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	TSPAN14--SOD2	3	0	TSPAN14	15764	chr10:82277760:+	SOD2	42542	chr6:160113757:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	TSPAN14->chr10:82213922-82292879:+,tetraspanin_14,SOD2->chr6:160090089-160183561:-,superoxide_dismutase_2,_mitochondrial	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	WIPF2--MARK3	3	0	WIPF2	12118	chr17:38435617:+	MARK3	32811	chr14:103932032:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	MYO5A--FIP1L1	2	1	MYO5A	1271	chr15:52820977:-	FIP1L1	63515	chr4:54265897:+	ONLY_REF_SPLICE	YES	0	18	1	0.14	0.0246	0.0123	MYO5A->chr15:52599480-52821247:-,myosin_VA,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	SNU899_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	ANKRD40--RTN4	2	0	ANKRD40	5286	chr17:48774301:-	RTN4	25832	chr2:55214834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	ANKRD40->ankyrin_repeat_domain_40,chr17:48770551-48785285:-,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	GSDMD--OPLAH	2	0	GSDMD	5092	chr8:144640621:+	OPLAH	18281	chr8:145111162:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GSDMD->chr8:144635377-144645232:+,gasdermin_D,OPLAH->5-oxoprolinase_(ATP-hydrolysing),chr8:145106167-145118735:-	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	NHLRC3--ITCH	2	0	NHLRC3	2406	chr13:39613848:+	ITCH	19090	chr20:33001548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	NHLRC3->NHL_repeat_containing_3,chr13:39612443-39624246:+,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	NHLRC3--SLK	2	0	NHLRC3	2406	chr13:39613848:+	SLK	28298	chr10:105779492:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	NHLRC3->NHL_repeat_containing_3,chr13:39612443-39624246:+,SLK->STE20_like_kinase,chr10:105726959-105788991:+	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	RNF2--PDLIM1	2	0	RNF2	1286	chr1:185014781:+	PDLIM1	16332	chr10:97031541:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	RNF2->chr1:185014496-185071740:+,ring_finger_protein_2,PDLIM1->PDZ_and_LIM_domain_1,chr10:96997329-97050781:-	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	TMEM110--PNKD	2	0	TMEM110	4530	chr3:52886619:-	PNKD	27883	chr2:219204506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	TMEM110->chr3:52870235-52931612:-,transmembrane_protein_110,PNKD->chr2:219135115-219211516:+,paroxysmal_nonkinesigenic_dyskinesia	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000692
GCIY_STOMACH	C21orf33--SHISA5	31	21	C21orf33	5159	chr21:45560224:+	SHISA5	17260	chr3:48520666:-	ONLY_REF_SPLICE	YES	62	90	0.46	0.37	0.3339	0.2262	C21orf33->chr21:45553487-45565605:+,chromosome_21_open_reading_frame_33,SHISA5->chr3:48509197-48542259:-,shisa_family_member_5	GCIY_STOMACH	0.37	0.46	0.5601	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	KIF1B--UBE4B	18	16	KIF1B	31519	chr1:10381915:+	UBE4B	65983	chr1:10132086:+	ONLY_REF_SPLICE	YES	69	134	0.33	0.2	0.1939	0.1723	YOSHIHARA_TCGA_num_samples[GBM:1|KIRC:1],LOCAL_REARRANGEMENT:+:[29566],KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B	GCIY_STOMACH	0.2	0.33	0.3662	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	CDC42--LINC00339	15	16	CDC42	5459	chr1:22408287:+	LINC00339	13994	chr1:22351785:+	INCL_NON_REF_SPLICE	YES	475	0	0.06	1	0.1616	0.1723	LOCAL_REARRANGEMENT:+:[21404],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,LINC00339->chr1:22351681-22357716:+,long_intergenic_non-protein_coding_RNA_339	GCIY_STOMACH	0.06	1	0.3339	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	ASCC1--MICU1	14	16	ASCC1	7701	chr10:73963185:-	MICU1	44374	chr10:74135630:-	ONLY_REF_SPLICE	YES	90	88	0.25	0.25	0.1508	0.1723	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	GCIY_STOMACH	0.25	0.25	0.3231	TRUE	0	0	0	2	0	TRUE	ACH-000047
GCIY_STOMACH	RP11-396K3.1--AC010091.1	14	4	RP11-396K3.1	1399	chr7:72569431:+	AC010091.1	28904	chr7:81236959:-	ONLY_REF_SPLICE	YES	39	0	0.32	1	0.1508	0.0431	RP11-396K3.1->chr7:72569033-72619657:+,AC010091.1->chr7:81205702-81255532:-	GCIY_STOMACH	0.32	1	0.1939	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	ZNF706--UBR5	11	13	ZNF706	7999	chr8:102211423:-	UBR5	16322	chr8:103373854:-	ONLY_REF_SPLICE	YES	342	56	0.07	0.3	0.1185	0.14	ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5	GCIY_STOMACH	0.07	0.3	0.2585	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	SMARCA4--MOCS2	3	39	SMARCA4	1253	chr19:11071850:+	MOCS2	48121	chr5:52404473:-	ONLY_REF_SPLICE	YES	21	5	0.67	0.89	0.0323	0.4201	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,MOCS2->chr5:52391509-52405893:-,molybdenum_cofactor_synthesis_2	GCIY_STOMACH	0.67	0.89	0.4524	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	C21orf33--SHISA5	9	14	C21orf33	3787	chr21:45557178:+	SHISA5	17260	chr3:48520666:-	ONLY_REF_SPLICE	YES	84	90	0.21	0.2	0.0969	0.1508	C21orf33->chr21:45553487-45565605:+,chromosome_21_open_reading_frame_33,SHISA5->chr3:48509197-48542259:-,shisa_family_member_5	GCIY_STOMACH	0.2	0.21	0.2477	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	NOL12--LGALS1	10	6	NOL12	31571	chr22:38167743:+	LGALS1	38326	chr22:38072993:+	ONLY_REF_SPLICE	YES	16	9	0.5	0.64	0.1077	0.0646	LOCAL_REARRANGEMENT:+:[1867],NOL12->chr22:38077680-38170137:+,nucleolar_protein_12,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	GCIY_STOMACH	0.5	0.64	0.1723	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	ARPC1A--AC004893.11	6	9	ARPC1A	2200	chr7:98931040:+	AC004893.11	29771	chr7:98645278:+	ONLY_REF_SPLICE	YES	288	15	0.05	0.5	0.0646	0.0969	ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+,AC004893.11->chr7:98610788-98645863:+	GCIY_STOMACH	0.05	0.5	0.1615	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	SPRTN--DISC1	7	2	SPRTN	2501	chr1:231474350:+	DISC1	17702	chr1:231829572:+	ONLY_REF_SPLICE	YES	10	1	0.47	0.9	0.0754	0.0215	SPRTN->SprT-like_N-terminal_domain,chr1:231472850-231490769:+,DISC1->chr1:231762561-232177018:+,disrupted_in_schizophrenia_1	GCIY_STOMACH	0.47	0.9	0.0969	TRUE	0	0	0	2	0	TRUE	ACH-000047
GCIY_STOMACH	GON4L--ARHGEF2	3	16	GON4L	29395	chr1:155733103:-	ARHGEF2	63819	chr1:155932974:-	ONLY_REF_SPLICE	YES	48	140	0.28	0.12	0.0323	0.1723	LOCAL_REARRANGEMENT:-:[87439],GON4L->chr1:155719508-155829191:-,gon-4_like,ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-	GCIY_STOMACH	0.12	0.28	0.2046	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	SMARCA4--MOCS2	1	22	SMARCA4	1253	chr19:11071850:+	MOCS2	49543	chr5:52403051:-	ONLY_REF_SPLICE	YES	21	46	0.52	0.33	0.0108	0.237	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,MOCS2->chr5:52391509-52405893:-,molybdenum_cofactor_synthesis_2	GCIY_STOMACH	0.33	0.52	0.2478	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	TTK--SH3BGRL2	5	6	TTK	9448	chr6:80724303:+	SH3BGRL2	26788	chr6:80406202:+	ONLY_REF_SPLICE	YES	100	9	0.1	0.55	0.0539	0.0646	TTK->TTK_protein_kinase,chr6:80713604-80752244:+,SH3BGRL2->Oncogene{Bushman},SH3_domain_binding_glutamate_rich_protein_like_2,chr6:80341000-80413372:+	GCIY_STOMACH	0.1	0.55	0.1185	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	BOLA3--CCDC142	5	5	BOLA3	4895	chr2:74369399:-	CCDC142	15727	chr2:74699923:-	ONLY_REF_SPLICE	YES	4	3	0.71	0.77	0.0539	0.0539	BOLA3->bolA_family_member_3,chr2:74362525-74375121:-,CCDC142->chr2:74699113-74710535:-,coiled-coil_domain_containing_142	GCIY_STOMACH	0.71	0.77	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	PPL--C16orf89	5	3	PPL	20314	chr16:4935629:-	C16orf89	33280	chr16:5097965:-	INCL_NON_REF_SPLICE	YES	47	0	0.15	1	0.0539	0.0323	LOCAL_REARRANGEMENT:-:[83381],PPL->chr16:4932508-5010742:-,periplakin,C16orf89->chr16:5094123-5116111:-,chromosome_16_open_reading_frame_89	GCIY_STOMACH	0.15	1	0.0862	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	CCAT1--KB-1562D12.1	5	1	CCAT1	1279	chr8:128231055:-	KB-1562D12.1	8182	chr8:102473845:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0539	0.0108	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),KB-1562D12.1->chr8:102473405-102504727:-	GCIY_STOMACH	0.5	1	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	PLEKHA5--RP11-361I14.2	4	5	PLEKHA5	3233	chr12:19285384:+	RP11-361I14.2	54342	chr12:18890448:+	ONLY_REF_SPLICE	YES	52	0	0.15	1	0.0431	0.0539	PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5,RP11-361I14.2->chr12:18867729-18890812:+	GCIY_STOMACH	0.15	1	0.097	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	ASCC1--MICU1	1	16	ASCC1	7701	chr10:73963185:-	MICU1	43254	chr10:74139341:-	ONLY_REF_SPLICE	YES	90	101	0.16	0.14	0.0108	0.1723	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	GCIY_STOMACH	0.14	0.16	0.1831	TRUE	0	0	0	2	0	TRUE	ACH-000047
GCIY_STOMACH	FHOD3--MOCOS	3	1	FHOD3	1287	chr18:33877963:+	MOCOS	51285	chr18:33828885:+	ONLY_REF_SPLICE	YES	39	8	0.09	0.33	0.0323	0.0108	LOCAL_REARRANGEMENT:+:[25557],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	GCIY_STOMACH	0.09	0.33	0.0431	TRUE	0	0	0	2	0	TRUE	ACH-000047
GCIY_STOMACH	CDCA7--LRRC1	3	0	CDCA7	8756	chr2:174232559:+	LRRC1	26930	chr6:53784444:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	CDCA7->cell_division_cycle_associated_7,chr2:174219548-174233725:+,LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	DOT1L--LGALS3BP	3	0	DOT1L	25402	chr19:2222354:+	LGALS3BP	43266	chr17:76968989:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	ITPR2--TM7SF3	3	0	ITPR2	2580	chr12:26943090:-	TM7SF3	70644	chr12:27156323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	PCMTD1--GPRIN3	3	0	PCMTD1	7395	chr8:52758221:-	GPRIN3	22665	chr4:90171384:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,GPRIN3->GPRIN_family_member_3,chr4:90157537-90229161:-	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	RBM14--AC018766.6	3	0	RBM14	1476	chr11:66384528:+	AC018766.6	12840	chr19:50357848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+,AC018766.6->chr19:50356144-50358224:-	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	RBMS1--AC009961.3	3	0	RBMS1	8516	chr2:161223727:-	AC009961.3	33013	chr2:160567405:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,AC009961.3->chr2:160527219-160568946:-	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	RPL23AP79--ATP2B1	3	0	RPL23AP79	2311	chr19:59086955:+	ATP2B1	16768	chr12:90049884:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	RPL23AP79->chr19:59084870-59111168:+,ribosomal_protein_L23a_pseudogene_79,ATP2B1->ATPase_plasma_membrane_Ca2+_transporting_1,chr12:89981828-90103077:-	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	LPPR3--SBNO2	2	3	LPPR3	3901	chr19:814434:-	SBNO2	28015	chr19:1112536:-	ONLY_REF_SPLICE	NO	6	56	0.45	0.08	0.0215	0.0323	LPPR3->chr19:812518-821967:-,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	GCIY_STOMACH	0.08	0.45	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	RP11-115K3.1--VMP1	1	6	RP11-115K3.1	1199	chr17:36105404:+	VMP1	15724	chr17:57851115:+	ONLY_REF_SPLICE	NO	4	84	0.64	0.08	0.0108	0.0646	RP11-115K3.1->chr17:36105206-36108563:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	GCIY_STOMACH	0.08	0.64	0.0754	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	INPP5A--JAKMIP3	2	1	INPP5A	2394	chr10:134421460:+	JAKMIP3	46435	chr10:133995861:+	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0215	0.0108	INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A,JAKMIP3->Janus_kinase_and_microtubule_interacting_protein_3,chr10:133918175-133998313:+	GCIY_STOMACH	0.25	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	APP--SUGT1P	2	0	APP	10490	chr21:27423316:-	SUGT1P	32176	chr9:33510709:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,SUGT1P->chr9:33503653-33510709:-	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	ATR--PLEKHA1	2	0	ATR	1181	chr3:142297488:-	PLEKHA1	78916	chr10:124189140:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	C17orf62--CDK10	2	0	C17orf62	1130	chr17:80408576:-	CDK10	17150	chr16:89755660:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62,CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	CCDC40--RNF213	2	0	CCDC40	10551	chr17:78039405:+	RNF213	39706	chr17:78268519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	CCDC40->chr17:78010435-78074412:+,coiled-coil_domain_containing_40,RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	CRIM1--MXI1	2	0	CRIM1	5875	chr2:36623930:+	MXI1	35018	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	CXorf38--LARP1	2	0	CXorf38	1561	chrX:40506259:-	LARP1	18454	chr5:154172182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	CXorf38->chrX:40488285-40506819:-,chromosome_X_open_reading_frame_38,LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	FAM117A--TAC4	2	0	FAM117A	5206	chr17:47841254:-	TAC4	21208	chr17:47921519:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	LOCAL_REARRANGEMENT:-:[49129],FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,TAC4->chr17:47915671-47925379:-,tachykinin_4_(hemokinin)	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	FAM69A--HIPK1	2	0	FAM69A	1125	chr1:93426933:-	HIPK1	15277	chr1:114483004:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	FAM69A->chr1:93307724-93427057:-,family_with_sequence_similarity_69_member_A,HIPK1->chr1:114471814-114520426:+,homeodomain_interacting_protein_kinase_1	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	JAK1--C19orf68	2	0	JAK1	23542	chr1:65305286:-	C19orf68	33224	chr19:48675051:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	JAK1->ArcherDX_panel,FoundationOne_panel,Janus_kinase_1,Oncogene{Bushman},chr1:65298912-65432187:-,C19orf68->chr19:48673949-48700877:+,chromosome_19_open_reading_frame_68	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	LRRC1--RP11-438J1.1	2	0	LRRC1	1919	chr6:53660213:+	RP11-438J1.1	27401	chr3:10319963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1,RP11-438J1.1->chr3:10291056-10327480:+	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	MED13L--ATG5	2	0	MED13L	35177	chr12:116401212:-	ATG5	51502	chr6:106634551:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,ATG5->autophagy_related_5,chr6:106632351-106773666:-	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	MXI1--SLC4A7	2	0	MXI1	8916	chr10:112039052:+	SLC4A7	18708	chr3:27493989:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+,SLC4A7->chr3:27414214-27525911:-,solute_carrier_family_4_member_7	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	NOTCH1--ZBTB18	2	0	NOTCH1	2216	chr9:139438476:-	ZBTB18	32953	chr1:244217090:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	NOTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:139388896-139440314:-,notch_1,ZBTB18->chr1:244214585-244220778:+,zinc_finger_and_BTB_domain_containing_18	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	OCEL1--ZDHHC8	2	0	OCEL1	1150	chr19:17337162:+	ZDHHC8	9349	chr22:20126717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	OCEL1->chr19:17337013-17340028:+,occludin/ELL_domain_containing_1,ZDHHC8->chr22:20116979-20135530:+,zinc_finger_DHHC-type_containing_8	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	OPA3--NOVA2	2	0	OPA3	2338	chr19:46087881:-	NOVA2	23472	chr19:46444203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	OPA3->chr19:46030685-46105470:-,optic_atrophy_3_(autosomal_recessive,_with_chorea_and_spastic_paraplegia),NOVA2->NOVA_alternative_splicing_regulator_2,chr19:46436992-46476804:-	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	PPP1R9A--CUX1	2	0	PPP1R9A	5004	chr7:94540820:+	CUX1	42510	chr7:101671378:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	PTPRG--PEG10	2	0	PTPRG	2909	chr3:61734656:+	PEG10	48784	chr7:94292646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	RP11-115K3.1--VMP1	1	4	RP11-115K3.1	1199	chr17:36105404:+	VMP1	16856	chr17:57886157:+	ONLY_REF_SPLICE	YES	4	99	0.56	0.05	0.0108	0.0431	RP11-115K3.1->chr17:36105206-36108563:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	GCIY_STOMACH	0.05	0.56	0.0539	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	SLC2A2--TGFA	2	0	SLC2A2	1095	chr3:170744445:-	TGFA	17655	chr2:70742044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	SLC2A2->chr3:170714137-170744539:-,solute_carrier_family_2_member_2,TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	STAT5B--PTRF	2	0	STAT5B	1460	chr17:40428266:-	PTRF	24274	chr17:40557406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,PTRF->chr17:40554470-40575535:-,polymerase_I_and_transcript_release_factor	GCIY_STOMACH	1	1	0.0215	TRUE	0	1	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	TPD52L1--CIC	2	0	TPD52L1	5712	chr6:125541339:+	CIC	30057	chr19:42790923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	TPD52L1->chr6:125440195-125585553:+,tumor_protein_D52-like_1,CIC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},capicua_transcriptional_repressor,chr19:42772689-42799949:+	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	TTC3--NUMBL	2	0	TTC3	1139	chr21:38445664:+	NUMBL	68639	chr19:41192900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,NUMBL->NUMB_like,_endocytic_adaptor_protein,chr19:41172596-41196877:-	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	UBE2D2--TIMMDC1	2	0	UBE2D2	1182	chr5:138906197:+	TIMMDC1	18310	chr3:119236052:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,TIMMDC1->chr3:119217379-119243937:+,translocase_of_inner_mitochondrial_membrane_domain_containing_1	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	UBE2V2--PCM1	2	0	UBE2V2	1071	chr8:48921030:+	PCM1	21678	chr8:17793098:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2,PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	UBLCP1--RUNDC3B	2	0	UBLCP1	1280	chr5:158690368:+	RUNDC3B	17239	chr7:87280138:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	UBLCP1->chr5:158690089-158713044:+,ubiquitin_like_domain_containing_CTD_phosphatase_1,RUNDC3B->RUN_domain_containing_3B,chr7:87256864-87461611:+	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	WDPCP--IVNS1ABP	2	0	WDPCP	35215	chr2:63401805:-	IVNS1ABP	48024	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	FTX--WHSC1L1	1	1	FTX	9567	chrX:73494177:-	WHSC1L1	23795	chr8:38205733:-	ONLY_REF_SPLICE	YES	1	53	0.67	0.04	0.0108	0.0108	FTX->FTX_transcript,_XIST_regulator_(non-protein_coding),chrX:73183790-73513409:-,WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-	GCIY_STOMACH	0.04	0.67	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	PTGR1--ZNFX1	1	1	PTGR1	12153	chr9:114332371:-	ZNFX1	21524	chr20:47888287:-	ONLY_REF_SPLICE	YES	11	36	0.15	0.05	0.0108	0.0108	PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1,ZNFX1->chr20:47854483-47894963:-,zinc_finger_NFX1-type_containing_1	GCIY_STOMACH	0.05	0.15	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	SGCE--CYP3A4	1	1	SGCE	6744	chr7:94252637:-	CYP3A4	20570	chr7:99377708:-	ONLY_REF_SPLICE	YES	43	0	0.04	1	0.0108	0.0108	SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon,CYP3A4->chr7:99354604-99381888:-,cytochrome_P450_family_3_subfamily_A_member_4	GCIY_STOMACH	0.04	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000047
TE5_OESOPHAGUS	OXR1--ODF1	88	73	OXR1	20810	chr8:107726213:+	ODF1	34930	chr8:103572680:+	ONLY_REF_SPLICE	YES	158	1	0.5	0.99	1.0096	0.8375	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,ODF1->chr8:103563800-103573245:+,outer_dense_fiber_of_sperm_tails_1	TE5_OESOPHAGUS	0.5	0.99	1.8471	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	OXR1--RIMS2	68	85	OXR1	14983	chr8:107705105:+	RIMS2	43326	chr8:104922549:+	ONLY_REF_SPLICE	YES	180	1	0.46	0.99	0.7801	0.9752	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	TE5_OESOPHAGUS	0.46	0.99	1.7553	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	LATS2--GLRA2	60	52	LATS2	3909	chr13:21619824:-	GLRA2	19390	chrX:14548070:+	ONLY_REF_SPLICE	YES	29	0	0.79	1	0.6884	0.5966	LATS2->Oncogene{Bushman},chr13:21547171-21635686:-,large_tumor_suppressor_kinase_2,GLRA2->chrX:14547420-14749934:+,glycine_receptor_alpha_2	TE5_OESOPHAGUS	0.79	1	1.285	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	OXR1--RIMS2	40	92	OXR1	14983	chr8:107705105:+	RIMS2	43139	chr8:104922362:+	ONLY_REF_SPLICE	YES	180	1	0.42	0.99	0.4589	1.0555	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	TE5_OESOPHAGUS	0.42	0.99	1.5144	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	PTPN12--PHTF2	39	32	PTPN12	13163	chr7:77230123:+	PHTF2	40714	chr7:77549596:+	ONLY_REF_SPLICE	YES	316	188	0.18	0.27	0.4474	0.3671	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	TE5_OESOPHAGUS	0.18	0.27	0.8145	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	OXR1--RIMS2	22	45	OXR1	14983	chr8:107705105:+	RIMS2	44535	chr8:104924281:+	ONLY_REF_SPLICE	YES	180	46	0.27	0.59	0.2524	0.5163	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	TE5_OESOPHAGUS	0.27	0.59	0.7687	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	OXR1--ODF1	8	77	OXR1	22108	chr8:107738537:+	ODF1	34930	chr8:103572680:+	ONLY_REF_SPLICE	YES	297	1	0.22	0.99	0.0918	0.8834	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,ODF1->chr8:103563800-103573245:+,outer_dense_fiber_of_sperm_tails_1	TE5_OESOPHAGUS	0.22	0.99	0.9752	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MKRN2--TSEN2	20	2	MKRN2	1163	chr3:12598675:+	TSEN2	22924	chr3:12570387:+	ONLY_REF_SPLICE	YES	2	22	0.92	0.5	0.2295	0.0229	LOCAL_REARRANGEMENT:+:[17391],MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,TSEN2->chr3:12525931-12581122:+,tRNA_splicing_endonuclease_subunit_2	TE5_OESOPHAGUS	0.5	0.92	0.2524	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	C5orf24--SNX25	16	9	C5orf24	1533	chr5:134181902:+	SNX25	15735	chr4:186185592:+	ONLY_REF_SPLICE	YES	9	18	0.74	0.58	0.1836	0.1033	C5orf24->chr5:134181370-134195427:+,chromosome_5_open_reading_frame_24,SNX25->chr4:186125391-186291339:+,sorting_nexin_25	TE5_OESOPHAGUS	0.58	0.74	0.2869	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	UBR5--RP11-642D21.2	16	8	UBR5	4225	chr8:103372299:-	RP11-642D21.2	59004	chr8:106675169:-	ONLY_REF_SPLICE	YES	19	0	0.56	1	0.1836	0.0918	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,RP11-642D21.2->chr8:106674580-106697993:-	TE5_OESOPHAGUS	0.56	1	0.2754	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MKRN2--TSEN2	16	2	MKRN2	1163	chr3:12598675:+	TSEN2	23798	chr3:12571261:+	ONLY_REF_SPLICE	YES	2	18	0.9	0.5	0.1836	0.0229	LOCAL_REARRANGEMENT:+:[17391],MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,TSEN2->chr3:12525931-12581122:+,tRNA_splicing_endonuclease_subunit_2	TE5_OESOPHAGUS	0.5	0.9	0.2065	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	PNO1--RP11-152P17.2	14	5	PNO1	4135	chr2:68389795:+	RP11-152P17.2	18039	chr8:106799824:-	ONLY_REF_SPLICE	YES	71	2	0.21	0.9	0.1606	0.0574	PNO1->chr2:68384976-68403370:+,partner_of_NOB1_homolog,RP11-152P17.2->chr8:106792474-107072752:-	TE5_OESOPHAGUS	0.21	0.9	0.218	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	RIMS2--LPHN3	10	6	RIMS2	24497	chr8:104987734:+	LPHN3	54014	chr4:62362839:+	ONLY_REF_SPLICE	YES	87	0	0.16	1	0.1147	0.0688	RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2,LPHN3->chr4:62066976-62944053:+	TE5_OESOPHAGUS	0.16	1	0.1835	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	LPHN3--SDAD1	6	5	LPHN3	8045	chr4:62453158:+	SDAD1	48392	chr4:76903190:-	ONLY_REF_SPLICE	YES	6	51	0.65	0.18	0.0688	0.0574	LPHN3->chr4:62066976-62944053:+,SDAD1->SDA1_domain_containing_1,chr4:76862103-76912115:-	TE5_OESOPHAGUS	0.18	0.65	0.1262	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	SLC25A40--AC004862.6	4	5	SLC25A40	9255	chr7:87476264:-	AC004862.6	20437	chr7:80013440:-	ONLY_REF_SPLICE	YES	181	0	0.05	1	0.0459	0.0574	SLC25A40->chr7:87462883-87505672:-,solute_carrier_family_25_member_40,AC004862.6->chr7:79959508-80014295:-	TE5_OESOPHAGUS	0.05	1	0.1033	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	SLC25A40--AC004862.6	2	9	SLC25A40	12001	chr7:87470948:-	AC004862.6	20437	chr7:80013440:-	ONLY_REF_SPLICE	YES	224	0	0.05	1	0.0229	0.1033	SLC25A40->chr7:87462883-87505672:-,solute_carrier_family_25_member_40,AC004862.6->chr7:79959508-80014295:-	TE5_OESOPHAGUS	0.05	1	0.1262	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	CMSS1--FILIP1L	3	3	CMSS1	1210	chr3:99536887:+	FILIP1L	34505	chr3:99569914:-	ONLY_REF_SPLICE	YES	113	1	0.05	0.86	0.0344	0.0344	CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast),FILIP1L->chr3:99548985-99833357:-,filamin_A_interacting_protein_1-like	TE5_OESOPHAGUS	0.05	0.86	0.0688	TRUE	0	1	0	1	1	TRUE	ACH-000408
TE5_OESOPHAGUS	C5orf24--SNX25	1	9	C5orf24	2184	chr5:134182553:+	SNX25	15735	chr4:186185592:+	ONLY_REF_SPLICE	YES	8	18	0.56	0.36	0.0115	0.1033	C5orf24->chr5:134181370-134195427:+,chromosome_5_open_reading_frame_24,SNX25->chr4:186125391-186291339:+,sorting_nexin_25	TE5_OESOPHAGUS	0.36	0.56	0.1148	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	SYT8--RBMX	3	0	SYT8	8250	chr11:1858226:+	RBMX	14426	chrX:135960130:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	SYT8->chr11:1848709-1858751:+,synaptotagmin_8,RBMX->RNA_binding_motif_protein,_X-linked,chrX:135930163-135962923:-	TE5_OESOPHAGUS	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	BOK--TYSND1	2	0	BOK	1273	chr2:242498408:+	TYSND1	15121	chr10:71899897:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	BOK->BCL2-related_ovarian_killer,Oncogene{Bushman},chr2:242498136-242513546:+,TYSND1->chr10:71897737-71906432:-,trypsin_domain_containing_1	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	CDK19--TAF4	2	0	CDK19	1151	chr6:111137011:-	TAF4	45984	chr20:60551391:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CDK19->chr6:110931181-111137161:-,cyclin-dependent_kinase_19,TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	CHP1--BCAP29	2	0	CHP1	3780	chr15:41535937:+	BCAP29	24853	chr7:107253777:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CHP1->calcineurin_like_EF-hand_protein_1,chr15:41523037-41574043:+,BCAP29->B-cell_receptor-associated_protein_29,chr7:107220422-107269615:+	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MTFR1--NR2F1-AS1	2	0	MTFR1	2199	chr8:66582253:+	NR2F1-AS1	26247	chr5:92905708:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	NR2F2--TGIF1	2	0	NR2F2	1415	chr15:96869581:+	TGIF1	25337	chr18:3456352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	NR2F2->chr15:96869167-96883492:+,nuclear_receptor_subfamily_2_group_F_member_2,TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	PKP4--TANK	2	0	PKP4	8477	chr2:159459616:+	TANK	40201	chr2:162036125:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	PKP4->chr2:159313476-159539391:+,plakophilin_4,TANK->TRAF_family_member_associated_NFKB_activator,chr2:161993419-162092732:+	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	RHBDL2--FAF1	2	0	RHBDL2	1118	chr1:39407354:-	FAF1	27634	chr1:51061888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RHBDL2->chr1:39351479-39407471:-,rhomboid,_veinlet-like_2_(Drosophila),FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	RP11-385J1.2--GPR115	1	2	RP11-385J1.2	1917	chr3:178577277:-	GPR115	17016	chr6:47661408:+	ONLY_REF_SPLICE	YES	51	0	0.06	1	0.0115	0.0229	RP11-385J1.2->chr3:178244293-178578193:-,GPR115->chr6:47653600-47689757:+	TE5_OESOPHAGUS	0.06	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000408
SKLMS1_SOFT_TISSUE	ACACA--NPLOC4	81	30	ACACA	13908	chr17:35687113:-	NPLOC4	97252	chr17:79539114:-	ONLY_REF_SPLICE	YES	39	86	0.74	0.56	1.0385	0.3846	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	SKLMS1_SOFT_TISSUE	0.56	0.74	1.4231	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-124N14.3--MAPRE1	87	0	RP11-124N14.3	2020	chr10:17275813:-	MAPRE1	7791	chr20:31421544:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1154	0	RP11-124N14.3->chr10:17275324-17276832:-,MAPRE1->Oncogene{Bushman},chr20:31407699-31438211:+,microtubule_associated_protein_RP/EB_family_member_1	SKLMS1_SOFT_TISSUE	1	1	1.1154	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	IGF1R--PLIN1	68	20	IGF1R	32981	chr15:99501534:+	PLIN1	51838	chr15:90208481:-	INCL_NON_REF_SPLICE	YES	6	0	0.94	1	0.8718	0.2564	IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,PLIN1->chr15:90207596-90222658:-,perilipin_1	SKLMS1_SOFT_TISSUE	0.94	1	1.1282	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	STAG1--ARMC8	28	4	STAG1	1184	chr3:136471037:-	ARMC8	64101	chr3:137991809:+	ONLY_REF_SPLICE	YES	79	34	0.29	0.48	0.359	0.0513	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,ARMC8->armadillo_repeat_containing_8,chr3:137906109-138017231:+	SKLMS1_SOFT_TISSUE	0.29	0.48	0.4103	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	CPEB1--IGF1R	23	16	CPEB1	18056	chr15:83224620:-	IGF1R	37619	chr15:99434554:+	ONLY_REF_SPLICE	YES	3	29	0.93	0.57	0.2949	0.2051	CPEB1->chr15:83211951-83317612:-,cytoplasmic_polyadenylation_element_binding_protein_1,IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor	SKLMS1_SOFT_TISSUE	0.57	0.93	0.5	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	TYW1B--YEATS2	16	5	TYW1B	6969	chr7:72267415:-	YEATS2	37782	chr3:183490093:+	ONLY_REF_SPLICE	YES	15	35	0.58	0.38	0.2051	0.0641	TYW1B->chr7:72023729-72298777:-,tRNA-yW_synthesizing_protein_1_homolog_B,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	SKLMS1_SOFT_TISSUE	0.38	0.58	0.2692	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RYK--KCNMB3	15	3	RYK	6979	chr3:133921574:-	KCNMB3	31441	chr3:178968722:-	ONLY_REF_SPLICE	YES	87	6	0.17	0.75	0.1923	0.0385	RYK->chr3:133784147-133969689:-,receptor-like_tyrosine_kinase,KCNMB3->chr3:178957530-178984790:-,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_3	SKLMS1_SOFT_TISSUE	0.17	0.75	0.2308	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	NCBP1--TMOD1	14	0	NCBP1	1290	chr9:100396197:+	TMOD1	29767	chr9:100286423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1795	0	NUCLCLUST,LOCAL_REARRANGEMENT:+:[31878],NCBP1->chr9:100395908-100436030:+,nuclear_cap_binding_protein_subunit_1,TMOD1->chr9:100263462-100364030:+,tropomodulin_1	SKLMS1_SOFT_TISSUE	1	1	0.1795	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	CPEB1--IGF1R	11	10	CPEB1	14939	chr15:83240094:-	IGF1R	37619	chr15:99434554:+	ONLY_REF_SPLICE	YES	25	29	0.46	0.42	0.141	0.1282	CPEB1->chr15:83211951-83317612:-,cytoplasmic_polyadenylation_element_binding_protein_1,IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor	SKLMS1_SOFT_TISSUE	0.42	0.46	0.2692	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RALA--YAE1D1	11	6	RALA	1343	chr7:39663424:+	YAE1D1	18284	chr7:39649216:+	ONLY_REF_SPLICE	YES	236	2	0.07	0.89	0.141	0.0769	LOCAL_REARRANGEMENT:+:[13163],RALA->Oncogene{Bushman},chr7:39663082-39747723:+,v-ral_simian_leukemia_viral_oncogene_homolog_A_(ras_related),YAE1D1->Yae1_domain_containing_1,chr7:39605975-39649919:+	SKLMS1_SOFT_TISSUE	0.07	0.89	0.2179	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	ZMYND8--RP1-148H17.1	8	3	ZMYND8	6534	chr20:45976600:-	RP1-148H17.1	40103	chr20:46026089:-	ONLY_REF_SPLICE	YES	27	0	0.29	1	0.1026	0.0385	LOCAL_REARRANGEMENT:-:[35106],ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,RP1-148H17.1->chr20:46020673-46041071:-	SKLMS1_SOFT_TISSUE	0.29	1	0.1411	TRUE	0	9	0	1	9	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	AC009961.3--WDSUB1	6	5	AC009961.3	2693	chr2:160567228:-	WDSUB1	19696	chr2:160105023:-	ONLY_REF_SPLICE	YES	1	15	0.92	0.42	0.0769	0.0641	AC009961.3->chr2:160527219-160568946:-,WDSUB1->WD_repeat,_sterile_alpha_motif_and_U-box_domain_containing_1,chr2:160092304-160143310:-	SKLMS1_SOFT_TISSUE	0.42	0.92	0.141	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	NR3C2--RP11-8L2.1	6	2	NR3C2	5293	chr4:149356256:-	RP11-8L2.1	36015	chr4:84717769:-	ONLY_REF_SPLICE	YES	20	0	0.29	1	0.0769	0.0256	NR3C2->Oncogene{Bushman},chr4:148999913-149365850:-,nuclear_receptor_subfamily_3_group_C_member_2,RP11-8L2.1->chr4:84717589-85214565:-	SKLMS1_SOFT_TISSUE	0.29	1	0.1025	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RFFL--TRPC3	5	5	RFFL	7733	chr17:33353393:-	TRPC3	26355	chr4:122854197:-	ONLY_REF_SPLICE	YES	29	1	0.26	0.91	0.0641	0.0641	RFFL->chr17:33333009-33416338:-,ring_finger_and_FYVE-like_domain_containing_E3_ubiquitin_protein_ligase,TRPC3->chr4:122800182-122872909:-,transient_receptor_potential_cation_channel_subfamily_C_member_3	SKLMS1_SOFT_TISSUE	0.26	0.91	0.1282	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	NCK1--ZIC4	5	1	NCK1	4708	chr3:136647069:+	ZIC4	18321	chr3:147120599:-	ONLY_REF_SPLICE	YES	108	0	0.05	1	0.0641	0.0128	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,ZIC4->Zic_family_member_4,chr3:147103833-147124647:-	SKLMS1_SOFT_TISSUE	0.05	1	0.0769	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	NSF--ARL17A	5	0	NSF	1119	chr17:44668153:+	ARL17A	39272	chr17:44594599:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0	LOCAL_INVERSION:+:-:[10947],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,ARL17A->ADP_ribosylation_factor_like_GTPase_17A,chr17:44594068-44657088:-	SKLMS1_SOFT_TISSUE	1	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	VPS13D--TNFRSF1B	4	0	VPS13D	4677	chr1:12304674:+	TNFRSF1B	98289	chr1:12262024:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0	LOCAL_REARRANGEMENT:+:[20839],VPS13D->chr1:12290124-12572099:+,vacuolar_protein_sorting_13_homolog_D,TNFRSF1B->Oncogene{Bushman},chr1:12227060-12269285:+,tumor_necrosis_factor_receptor_superfamily_member_1B	SKLMS1_SOFT_TISSUE	1	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	ZMPSTE24--RLF	3	2	ZMPSTE24	9875	chr1:40747199:+	RLF	26190	chr1:40701464:+	ONLY_REF_SPLICE	YES	102	29	0.05	0.15	0.0385	0.0256	LOCAL_REARRANGEMENT:+:[17186],ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24,RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion	SKLMS1_SOFT_TISSUE	0.05	0.15	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-163F15.1--RP11-215N21.1	3	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0385	0.0128	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	SKLMS1_SOFT_TISSUE	0.67	1	0.0513	TRUE	0	5	0	7	5	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	STAG1--ARMC8	3	0	STAG1	1184	chr3:136471037:-	ARMC8	66347	chr3:138003273:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,ARMC8->armadillo_repeat_containing_8,chr3:137906109-138017231:+	SKLMS1_SOFT_TISSUE	1	1	0.0385	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RFFL--TRPC3	1	7	RFFL	10302	chr17:33348390:-	TRPC3	26355	chr4:122854197:-	ONLY_REF_SPLICE	YES	20	1	0.29	0.89	0.0128	0.0897	RFFL->chr17:33333009-33416338:-,ring_finger_and_FYVE-like_domain_containing_E3_ubiquitin_protein_ligase,TRPC3->chr4:122800182-122872909:-,transient_receptor_potential_cation_channel_subfamily_C_member_3	SKLMS1_SOFT_TISSUE	0.29	0.89	0.1025	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	ZMYND8--RP1-148H17.1	2	3	ZMYND8	7645	chr20:45947695:-	RP1-148H17.1	38977	chr20:46040137:-	ONLY_REF_SPLICE	YES	60	0	0.08	1	0.0256	0.0385	LOCAL_REARRANGEMENT:-:[35106],ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,RP1-148H17.1->chr20:46020673-46041071:-	SKLMS1_SOFT_TISSUE	0.08	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	COL8A1--NLN	2	0	COL8A1	1190	chr3:99357508:+	NLN	24734	chr5:65054394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,NLN->chr5:65018023-65167553:+,neurolysin	SKLMS1_SOFT_TISSUE	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	HP1BP3--EIF4G3	2	0	HP1BP3	1129	chr1:21113688:-	EIF4G3	30977	chr1:21377487:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	SKLMS1_SOFT_TISSUE	1	1	0.0256	TRUE	0	0	0	3	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	TNRC6C--SPAG9	2	0	TNRC6C	4297	chr17:76027923:+	SPAG9	36946	chr17:49157065:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	TNRC6C->chr17:76000249-76104916:+,trinucleotide_repeat_containing_6C,SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9	SKLMS1_SOFT_TISSUE	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	ZMYND8--RP1-148H17.1	1	3	ZMYND8	6534	chr20:45976600:-	RP1-148H17.1	38977	chr20:46040137:-	ONLY_REF_SPLICE	YES	27	0	0.13	1	0.0128	0.0385	LOCAL_REARRANGEMENT:-:[35106],ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,RP1-148H17.1->chr20:46020673-46041071:-	SKLMS1_SOFT_TISSUE	0.13	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000145
TE8_OESOPHAGUS	CHD6--MLIP	16	0	CHD6	4417	chr20:40179944:-	MLIP	59094	chr6:53986245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.231	0	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,MLIP->chr6:53794780-54131078:+,muscular_LMNA-interacting_protein	TE8_OESOPHAGUS	1	1	0.231	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	ST3GAL1--CASC8	6	1	ST3GAL1	12845	chr8:134487962:-	CASC8	34529	chr8:128302305:-	ONLY_REF_SPLICE	YES	21	0	0.25	1	0.0866	0.0144	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	TE8_OESOPHAGUS	0.25	1	0.101	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	PVT1--WISP1	5	2	PVT1	10746	chr8:128951922:+	WISP1	29627	chr8:134225107:+	ONLY_REF_SPLICE	YES	11	2	0.39	0.78	0.0722	0.0289	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,WISP1->WNT1_inducible_signaling_pathway_protein_1,chr8:134203282-134242587:+	TE8_OESOPHAGUS	0.39	0.78	0.1011	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	MSNP1--RP11-399D6.2	5	0	MSNP1	1978	chr5:25910589:+	RP11-399D6.2	6943	chr9:22674555:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	MSNP1->chr5:25909612-25911343:+,moesin_pseudogene_1,RP11-399D6.2->chr9:22646199-22824212:+	TE8_OESOPHAGUS	1	1	0.0722	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	C7orf10--ZNFX1	4	0	C7orf10	24426	chr7:40900279:+	ZNFX1	36409	chr20:47877061:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	C7orf10->chr7:40174575-40900362:+,ZNFX1->chr20:47854483-47894963:-,zinc_finger_NFX1-type_containing_1	TE8_OESOPHAGUS	1	1	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	EHD2--PEA15	4	0	EHD2	2622	chr19:48220240:+	PEA15	20677	chr1:160183730:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	EHD2->EH_domain_containing_2,chr19:48216600-48246391:+,PEA15->chr1:160175127-160185166:+,phosphoprotein_enriched_in_astrocytes_15	TE8_OESOPHAGUS	1	1	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	COL4A2--RTN4	3	0	COL4A2	37230	chr13:111144497:+	RTN4	55487	chr2:55277680:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	EEF1A2--CHD4	3	0	EEF1A2	4317	chr20:62126382:-	CHD4	29723	chr12:6690953:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	EEF1A2->Oncogene{Bushman},chr20:62119366-62130505:-,eukaryotic_translation_elongation_factor_1_alpha_2,CHD4->ArcherDX_panel,FoundationOne_panel,chr12:6679249-6716642:-,chromodomain_helicase_DNA_binding_protein_4	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	JSRP1--VIM	3	0	JSRP1	1205	chr19:2269554:-	VIM	11526	chr10:17271377:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,VIM->chr10:17270258-17279592:+,vimentin	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	3	0	TRUE	ACH-000452
TE8_OESOPHAGUS	JSRP1--VIM	3	0	JSRP1	1192	chr19:2269567:-	VIM	11424	chr10:17271275:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,VIM->chr10:17270258-17279592:+,vimentin	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	3	0	TRUE	ACH-000452
TE8_OESOPHAGUS	NAA15--DACH1	3	0	NAA15	30713	chr4:140339412:+	DACH1	50015	chr13:72012867:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+,DACH1->chr13:72012098-72441330:-,dachshund_family_transcription_factor_1	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	PAAF1--MRPL48	3	0	PAAF1	15342	chr11:73630077:+	MRPL48	36435	chr11:73575341:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0	LOCAL_REARRANGEMENT:+:[11566],PAAF1->chr11:73587744-73638790:+,proteasomal_ATPase_associated_factor_1,MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	PTGR1--DNAJC25	3	0	PTGR1	4736	chr9:114355206:-	DNAJC25	27633	chr9:114431549:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	LOCAL_INVERSION:-:+:[31497],PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1,DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	TALDO1--RABL6	3	0	TALDO1	1250	chr11:747578:+	RABL6	15768	chr9:139717977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0	TALDO1->chr11:747329-765024:+,transaldolase_1,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	TPM2--SPTAN1	3	0	TPM2	4924	chr9:35684729:-	SPTAN1	12541	chr9:131329143:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	UBL7--MMP14	3	0	UBL7	10041	chr15:74738484:-	MMP14	20086	chr14:23315697:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	UBL7->Oncogene{Bushman},chr15:74738318-74753523:-,ubiquitin_like_7,MMP14->Oncogene{Bushman},chr14:23305766-23318236:+,matrix_metallopeptidase_14	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	URI1--UBE2M	3	0	URI1	11911	chr19:30477275:+	UBE2M	27251	chr19:59068136:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,UBE2M->chr19:59067079-59070327:-,ubiquitin_conjugating_enzyme_E2_M	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	ZFAS1--GZF1	3	0	ZFAS1	2031	chr20:47895745:+	GZF1	10750	chr20:23345000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,GZF1->GDNF_inducible_zinc_finger_protein_1,chr20:23342787-23353700:+	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	CHKA--STPG2-AS1	2	1	CHKA	5944	chr11:67848871:-	STPG2-AS1	23685	chr4:98410925:+	ONLY_REF_SPLICE	YES	31	0	0.09	1	0.0289	0.0144	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,STPG2-AS1->STPG2_antisense_RNA_1,chr4:98288077-98411315:+	TE8_OESOPHAGUS	0.09	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	AC131097.3--EIF3D	2	0	AC131097.3	2273	chr2:242824786:+	EIF3D	19936	chr22:36913478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	AC131097.3->chr2:242823514-243020873:+,EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	DPH5--TXNDC11	2	0	DPH5	4639	chr1:101487197:-	TXNDC11	28121	chr16:11782301:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	DPH5->chr1:101455179-101491644:-,diphthamide_biosynthesis_5,TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	FANCI--EDC3	2	0	FANCI	1119	chr15:89787298:+	EDC3	47066	chr15:74967483:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	FBXL8--TCEA2	2	0	FBXL8	2944	chr16:67195840:+	TCEA2	15003	chr20:62697829:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	FBXL8->F-box_and_leucine-rich_repeat_protein_8,chr16:67193834-67198473:+,TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	GON4L--LIN9	2	0	GON4L	3780	chr1:155823067:-	LIN9	48328	chr1:226475498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	GON4L->chr1:155719508-155829191:-,gon-4_like,LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	HERC4--RPS21	2	0	HERC4	3466	chr10:69832640:-	RPS21	44146	chr20:60962377:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-,RPS21->chr20:60962172-60963576:+,ribosomal_protein_S21	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	LMAN2--NSD1	2	0	LMAN2	1680	chr5:176778174:-	NSD1	15733	chr5:176618885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_INVERSION:-:+:[31347],LMAN2->chr5:176758563-176778853:-,lectin,_mannose_binding_2,NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	MSRB3--RP11-592B15.4	2	0	MSRB3	7192	chr12:65722383:+	RP11-592B15.4	22053	chr10:51363787:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3,RP11-592B15.4->chr10:51287081-51371070:-	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	PHF20--VIMP	2	0	PHF20	4583	chr20:34389527:+	VIMP	36969	chr15:101815566:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,VIMP->VCP_interacting_membrane_selenoprotein,chr15:101811022-101817705:-	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	PTK2--TSNARE1	2	0	PTK2	2092	chr8:142011224:-	TSNARE1	79086	chr8:143365846:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	{Klijn_CCL:Lung=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	RASAL2--PTK2	2	0	RASAL2	1966	chr1:178063829:+	PTK2	81320	chr8:141727808:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	RASAL2->Oncogene{Bushman},RAS_protein_activator_like_2,chr1:178062864-178448644:+,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	RBM27--YIPF5	2	0	RBM27	19802	chr5:145651237:+	YIPF5	32241	chr5:143545168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+,YIPF5->Yip1_domain_family_member_5,chr5:143537723-143550278:-	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	RPL5--SQSTM1	2	0	RPL5	1093	chr1:93297674:+	SQSTM1	21704	chr5:179249958:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,SQSTM1->chr5:179233388-179265078:+,sequestosome_1	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	SDCBP--SRP9	2	0	SDCBP	4943	chr8:59477625:+	SRP9	17452	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	2	0	TRUE	ACH-000452
TE8_OESOPHAGUS	SMEK1--CATSPERB	2	0	SMEK1	2049	chr14:91975850:-	CATSPERB	54577	chr14:92053620:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:-:[70142],SMEK1->chr14:91923955-91976898:-,CATSPERB->cation_channel_sperm_associated_auxiliary_subunit_beta,chr14:92047040-92247051:-	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	SNAPC3--INSIG2	2	0	SNAPC3	5811	chr9:15447242:+	INSIG2	24212	chr2:118864666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	SNAPC3->Oncogene{Bushman},chr9:15422702-15465951:+,small_nuclear_RNA_activating_complex_polypeptide_3,INSIG2->chr2:118846028-118868573:+,insulin_induced_gene_2	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	SNHG12--FBXL20	2	0	SNHG12	4072	chr1:28906424:-	FBXL20	15966	chr17:37441826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	SNHG12->chr1:28905050-28909495:-,small_nucleolar_RNA_host_gene_12,FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	TFDP1--NT5DC2	2	0	TFDP1	9578	chr13:114290443:+	NT5DC2	21200	chr3:52563350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1,NT5DC2->5'-nucleotidase_domain_containing_2,chr3:52558386-52569070:-	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	ASAP1--TMEM71	1	1	ASAP1	37276	chr8:131092148:-	TMEM71	56779	chr8:133726461:-	ONLY_REF_SPLICE	NO	24	0	0.08	1	0.0144	0.0144	GTEx&tcga_normals:1/3694=0.03%,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,TMEM71->chr8:133697253-133772958:-,transmembrane_protein_71	TE8_OESOPHAGUS	0.08	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	ASAP1--TMEM71	1	1	ASAP1	38335	chr8:131088594:-	TMEM71	56779	chr8:133726461:-	ONLY_REF_SPLICE	YES	23	0	0.08	1	0.0144	0.0144	GTEx&tcga_normals:1/3694=0.03%,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,TMEM71->chr8:133697253-133772958:-,transmembrane_protein_71	TE8_OESOPHAGUS	0.08	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000452
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CYFIP2--PLCG2	223	114	CYFIP2	40402	chr5:156816435:+	PLCG2	60611	chr16:81902819:+	ONLY_REF_SPLICE	YES	349	106	0.49	0.76	2.5276	1.2922	{Klijn_CCL:Lymphoid=1},CYFIP2->chr5:156693089-156822606:+,cytoplasmic_FMR1_interacting_protein_2,PLCG2->ArcherDX_panel,FoundationOne_panel,chr16:81772702-81991899:+,phospholipase_C_gamma_2	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.76	3.8198	TRUE	0	0	0	2	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PRTN3	5	0	C17orf76-AS1	1593	chr17:16342728:+	PRTN3	14430	chr19:843461:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0567	0	C17orf76-AS1->chr17:16342136-16381992:+,PRTN3->chr19:840963-848175:+,proteinase_3	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO1G--RPLP2	5	0	MYO1G	12533	chr7:45006370:-	RPLP2	19974	chr11:809978:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	MYO1G->chr7:45002261-45018697:-,myosin_IG,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TET2--AIMP1	5	0	TET2	2105	chr4:106068136:+	AIMP1	31913	chr4:107246142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0567	0	TET2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:106067032-106200973:+,tet_methylcytosine_dioxygenase_2,AIMP1->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_1,chr4:107236701-107270383:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SYNCRIP--EEF1A1P5	4	0	SYNCRIP	1996	chr6:86352515:-	EEF1A1P5	20418	chr9:135894843:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	SYNCRIP->chr6:86318053-86353510:-,synaptotagmin_binding_cytoplasmic_RNA_interacting_protein,EEF1A1P5->chr9:135894816-135896553:+,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_5	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPZB--PSMB1	3	0	CAPZB	1137	chr1:19811930:-	PSMB1	21681	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD8--HNRNPC	3	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	1	3	0	10	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--ALDOA	3	0	EIF1	1079	chr17:39845215:+	ALDOA	14091	chr16:30077079:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	2	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTFR1--EIF3E	3	0	MTFR1	1051	chr8:66557019:+	EIF3E	36919	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC073610.5--PGAM5	2	0	AC073610.5	1009	chr12:49333438:-	PGAM5	11815	chr12:133297264:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	AC073610.5->chr12:49315767-49333446:-,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--ADRBK1	2	0	C17orf76-AS1	1593	chr17:16342728:+	ADRBK1	17489	chr11:67046671:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	C17orf76-AS1->chr17:16342136-16381992:+,ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERBB2--ACTL8	2	0	ERBB2	1887	chr17:37845053:+	ACTL8	31362	chr1:18149480:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,ACTL8->actin_like_8,chr1:18081808-18153558:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--TMEM181	2	0	FAM60A	2035	chr12:31478958:-	TMEM181	20358	chr6:158994452:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--C9orf40	2	0	FUBP1	14090	chr1:78414840:-	C9orf40	23656	chr9:77563122:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,C9orf40->chr9:77561497-77567802:-,chromosome_9_open_reading_frame_40	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--ESRRA	2	0	OAZ1	1259	chr19:2269743:+	ESRRA	11121	chr11:64081423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2E--TNK2	2	0	POLR2E	1341	chr19:1095258:-	TNK2	20639	chr3:195615477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	POLR2E->chr19:1086594-1095598:-,polymerase_(RNA)_II_subunit_E,TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-893F2.9--RNF41	2	0	RP11-893F2.9	1116	chr17:48365101:-	RNF41	13727	chr12:56602082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RP11-893F2.9->chr17:48358938-48365216:-,RNF41->chr12:56598285-56615717:-,ring_finger_protein_41	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL31--MGARP	2	0	RPL31	5008	chr2:101622533:+	MGARP	14745	chr4:140196546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RPL31->chr2:101618177-101640494:+,ribosomal_protein_L31,MGARP->chr4:140187317-140201492:-,mitochondria_localized_glutamic_acid_rich_protein	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL5--SPRY2	2	0	RPL5	1093	chr1:93297674:+	SPRY2	14777	chr13:80911891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,SPRY2->chr13:80910111-80915086:-,sprouty_RTK_signaling_antagonist_2	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
C2BBE1_LARGE_INTESTINE	DPP3--SLC46A1	25	15	DPP3	13776	chr11:66264948:+	SLC46A1	20103	chr17:26733641:-	ONLY_REF_SPLICE	YES	366	12	0.1	0.77	0.2854	0.1713	DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3,SLC46A1->chr17:26721661-26734215:-,solute_carrier_family_46_member_1	C2BBE1_LARGE_INTESTINE	0.1	0.77	0.4567	TRUE	0	0	0	2	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	BRCA2--N4BP2L2	23	14	BRCA2	18217	chr13:32921033:+	N4BP2L2	55606	chr13:33018263:-	ONLY_REF_SPLICE	YES	24	1	0.61	0.97	0.2626	0.1598	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:+:-:[32749],BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	C2BBE1_LARGE_INTESTINE	0.61	0.97	0.4224	TRUE	0	0	0	2	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	PEX14--PTPN14	26	0	PEX14	3457	chr1:10555378:+	PTPN14	46601	chr1:214531393:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2969	0	{Klijn_CCL:Colo-Rectal=1},PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14,PTPN14->Oncogene{Bushman},chr1:214522039-214725792:-,protein_tyrosine_phosphatase,_non-receptor_type_14	C2BBE1_LARGE_INTESTINE	1	1	0.2969	TRUE	0	0	0	2	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	ANP32B--SEPT7	5	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	C2BBE1_LARGE_INTESTINE	1	1	0.0571	TRUE	1	1	0	18	1	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	BRCA2--N4BP2L2	1	14	BRCA2	18217	chr13:32921033:+	N4BP2L2	54484	chr13:33020617:-	ONLY_REF_SPLICE	YES	24	0	0.38	1	0.0114	0.1598	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:+:-:[32749],BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	C2BBE1_LARGE_INTESTINE	0.38	1	0.1712	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	RP11-1057B8.2--RP11-452N4.1	3	1	RP11-1057B8.2	3793	chr8:135893523:+	RP11-452N4.1	8797	chr8:136300339:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0.0114	RP11-1057B8.2->chr8:135862178-135894142:+,RP11-452N4.1->chr8:136246374-136311962:+	C2BBE1_LARGE_INTESTINE	1	1	0.0457	TRUE	0	0	0	3	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	N4BP2L2--BRCA2	2	1	N4BP2L2	14548	chr13:33054727:-	BRCA2	50512	chr13:32944539:+	ONLY_REF_SPLICE	YES	0	42	1	0.07	0.0228	0.0114	LOCAL_INVERSION:-:+:[32749],N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-,BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+	C2BBE1_LARGE_INTESTINE	0.07	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	ALG11--ATP7B	2	0	ALG11	1065	chr13:52586598:+	ATP7B	14220	chr13:52549304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	LOCAL_INVERSION:+:-:[904],ALG11->ALG11,_alpha-1,2-mannosyltransferase,chr13:52586534-52603800:+,ATP7B->ATPase_copper_transporting_beta,chr13:52506809-52585630:-	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	2	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	ATRX--SEPSECS	2	0	ATRX	8873	chrX:76944311:-	SEPSECS	48732	chr4:25160729:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,SEPSECS->Sep_(O-phosphoserine)_tRNA:Sec_(selenocysteine)_tRNA_synthase,chr4:25121627-25162204:-	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	CSTF3-AS1--VAMP3	2	0	CSTF3-AS1	1125	chr11:33183327:+	VAMP3	10940	chr1:7837220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CSTF3-AS1->CSTF3_antisense_RNA_1_(head_to_head),chr11:33183203-33213144:+,VAMP3->chr1:7831329-7841492:+,vesicle_associated_membrane_protein_3	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	MBTD1--UTP18	2	0	MBTD1	2021	chr17:49336504:-	UTP18	33077	chr17:49357366:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_INVERSION:-:+:[365],MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1,UTP18->UTP18,_small_subunit_processome_component,chr17:49337889-49375297:+	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	OGFR--SERPINB1	2	0	OGFR	4491	chr20:61439677:+	SERPINB1	19428	chr6:2834246:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	OGFR->chr20:61436187-61445352:+,opioid_growth_factor_receptor,SERPINB1->Oncogene{Bushman},chr6:2832566-2842240:-,serpin_family_B_member_1	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	RPS6KA3--DDX3X	2	0	RPS6KA3	1842	chrX:20284682:-	DDX3X	49242	chrX:41217086:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},RPS6KA3->chrX:20168029-20285523:-,ribosomal_protein_S6_kinase_A3,DDX3X->DEAD-box_helicase_3,_X-linked,chrX:41192651-41223725:+	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	SAR1A--ANXA7	2	0	SAR1A	1111	chr10:71930169:-	ANXA7	25911	chr10:75147541:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A,ANXA7->annexin_A7,chr10:75134859-75173834:-	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	SLC25A13--ACN9	2	0	SLC25A13	5666	chr7:95864114:-	ACN9	28192	chr7:96810324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,ACN9->chr7:96745902-96811075:+	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	UBXN7--TFRC	2	0	UBXN7	1148	chr3:196159198:-	TFRC	29021	chr3:195803993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	UBXN7->UBX_domain_protein_7,chr3:196074533-196159345:-,TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	ZNF138--SP1	2	0	ZNF138	3779	chr7:64276031:+	SP1	12000	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	HGNC_GENEFAM,PROTCLUST,ZNF138->chr7:64254766-64294054:+,zinc_finger_protein_138,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	N4BP2L2--BRCA2	1	2	N4BP2L2	15937	chr13:33052024:-	BRCA2	50512	chr13:32944539:+	ONLY_REF_SPLICE	YES	0	42	1	0.07	0.0114	0.0228	LOCAL_INVERSION:-:+:[32749],N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-,BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+	C2BBE1_LARGE_INTESTINE	0.07	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	TMEM206--GUCA2B	1	1	TMEM206	8682	chr1:212550904:-	GUCA2B	17125	chr1:42620351:+	ONLY_REF_SPLICE	YES	33	1	0.06	0.67	0.0114	0.0114	TMEM206->chr1:212537273-212588243:-,transmembrane_protein_206,GUCA2B->chr1:42619092-42621495:+,guanylate_cyclase_activator_2B	C2BBE1_LARGE_INTESTINE	0.06	0.67	0.0228	TRUE	0	0	0	2	0	TRUE	ACH-000009
KPNRTBM1_AUTONOMIC_GANGLIA	EPB41L2--HDAC2	2	0	EPB41L2	1168	chr6:131384295:-	HDAC2	56114	chr6:114267312:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	EPB41L2->chr6:131160487-131384462:-,erythrocyte_membrane_protein_band_4.1_like_2,HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	TXNIP--SRP9	2	0	TXNIP	1584	chr1:145439052:+	SRP9	8274	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000345
DMS153_LUNG	FSCN1--AC092171.4	103	88	FSCN1	6576	chr7:5645230:+	AC092171.4	11198	chr7:5516000:+	INCL_NON_REF_SPLICE	YES	184	38	0.51	0.83	1.1329	0.9679	FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1,AC092171.4->chr7:5515435-5519442:+	DMS153_LUNG	0.51	0.83	2.1008	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	NF1--AC084809.2	71	41	NF1	4721	chr17:29486111:+	AC084809.2	78700	chr17:31204862:+	ONLY_REF_SPLICE	YES	75	1	0.6	0.99	0.7809	0.4509	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,AC084809.2->chr17:31203777-31205655:+	DMS153_LUNG	0.6	0.99	1.2318	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	FSCN1--AC092171.4	44	37	FSCN1	6361	chr7:5645015:+	AC092171.4	12923	chr7:5517725:+	INCL_NON_REF_SPLICE	YES	206	87	0.28	0.48	0.4839	0.4069	FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1,AC092171.4->chr7:5515435-5519442:+	DMS153_LUNG	0.28	0.48	0.8908	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	PPIL3--AGAP1	27	19	PPIL3	4465	chr2:201750421:-	AGAP1	29413	chr2:236791989:+	ONLY_REF_SPLICE	YES	85	68	0.35	0.4	0.297	0.209	PPIL3->chr2:201735630-201754026:-,peptidylprolyl_isomerase_like_3,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	DMS153_LUNG	0.35	0.4	0.506	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	FSCN1--AC092171.4	15	36	FSCN1	6349	chr7:5645003:+	AC092171.4	12923	chr7:5517725:+	INCL_NON_REF_SPLICE	YES	198	87	0.2	0.37	0.165	0.3959	FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1,AC092171.4->chr7:5515435-5519442:+	DMS153_LUNG	0.2	0.37	0.5609	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	PUM1--MACF1	12	23	PUM1	6137	chr1:31501643:-	MACF1	35481	chr1:39549839:+	ONLY_REF_SPLICE	YES	405	0	0.08	1	0.132	0.253	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	DMS153_LUNG	0.08	1	0.385	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	NF1--EPHB1	14	11	NF1	9263	chr17:29509683:+	EPHB1	83568	chr3:134498580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.154	0.121	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,EPHB1->ArcherDX_panel,EPH_receptor_B1,FoundationOne_panel,chr3:134316643-134979309:+	DMS153_LUNG	1	1	0.275	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	PPIL3--AGAP1	4	21	PPIL3	4465	chr2:201750421:-	AGAP1	27896	chr2:236761330:+	ONLY_REF_SPLICE	YES	85	78	0.23	0.24	0.044	0.231	PPIL3->chr2:201735630-201754026:-,peptidylprolyl_isomerase_like_3,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	DMS153_LUNG	0.23	0.24	0.275	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	PUM1--MACF1	2	24	PUM1	6137	chr1:31501643:-	MACF1	34677	chr1:39549035:+	ONLY_REF_SPLICE	YES	405	0	0.06	1	0.022	0.264	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	DMS153_LUNG	0.06	1	0.286	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	CASC9--RP11-300E4.2	4	1	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	55	0	0.08	1	0.044	0.011	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	DMS153_LUNG	0.08	1	0.055	TRUE	0	23	0	19	23	TRUE	ACH-000594
DMS153_LUNG	CASC9--RP11-300E4.2	3	0	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	DMS153_LUNG	1	1	0.033	TRUE	0	12	0	10	12	TRUE	ACH-000594
DMS153_LUNG	DTL--INTS7	3	0	DTL	4858	chr1:212220759:+	INTS7	23447	chr1:212194554:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_INVERSION:+:-:[35],DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,INTS7->chr1:212113741-212208884:-,integrator_complex_subunit_7	DMS153_LUNG	1	1	0.033	TRUE	0	0	0	2	0	TRUE	ACH-000594
DMS153_LUNG	RP11-681L8.1--STPG2	3	0	RP11-681L8.1	1346	chr4:98554629:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	DMS153_LUNG	1	1	0.033	TRUE	0	6	0	6	6	TRUE	ACH-000594
DMS153_LUNG	NF1--EPHB1	2	3	NF1	9263	chr17:29509683:+	EPHB1	91094	chr3:134644658:+	ONLY_REF_SPLICE	YES	0	35	1	0.12	0.022	0.033	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,EPHB1->ArcherDX_panel,EPH_receptor_B1,FoundationOne_panel,chr3:134316643-134979309:+	DMS153_LUNG	0.12	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	AKAP2--ATP6V1H	2	0	AKAP2	3257	chr9:112642961:+	ATP6V1H	41935	chr8:54684727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+,ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	CUX1--ADD1	2	0	CUX1	1415	chr7:101459373:+	ADD1	64174	chr4:2877623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,ADD1->adducin_1,chr4:2845584-2931803:+	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	CYP20A1--TRAPPC8	2	0	CYP20A1	5582	chr2:204131404:+	TRAPPC8	52687	chr18:29410952:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	CYP20A1->chr2:204103663-204163009:+,cytochrome_P450_family_20_subfamily_A_member_1,TRAPPC8->chr18:29409136-29533099:-,trafficking_protein_particle_complex_8	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	DNAJC6--USP24	2	0	DNAJC6	2273	chr1:65720332:+	USP24	78975	chr1:55551711:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,USP24->Oncogene{Bushman},chr1:55532032-55680786:-,ubiquitin_specific_peptidase_24	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	GNPAT--FAM122B	2	0	GNPAT	3610	chr1:231396429:+	FAM122B	28320	chrX:133905384:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GNPAT->chr1:231376953-231413719:+,glyceronephosphate_O-acyltransferase,FAM122B->chrX:133903596-133931262:-,family_with_sequence_similarity_122B	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	KIRREL3--DCPS	2	0	KIRREL3	2916	chr11:126870351:-	DCPS	30918	chr11:126201300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	LOCAL_INVERSION:-:+:[77610],KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila),DCPS->chr11:126173647-126215644:+,decapping_enzyme,_scavenger	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	NF1--AC084809.3	1	4	NF1	4721	chr17:29486111:+	AC084809.3	78144	chr17:31233209:+	ONLY_REF_SPLICE	YES	75	1	0.06	0.83	0.011	0.044	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,AC084809.3->chr17:31232680-31233602:+	DMS153_LUNG	0.06	0.83	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	PDE3B--MGAT4A	2	0	PDE3B	21983	chr11:14865572:+	MGAT4A	33193	chr2:99343030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B,MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	PHF7--CHMP1A	2	0	PHF7	4385	chr3:52448603:+	CHMP1A	17229	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=2,Ovary=1,Minor_Salivary_Gland=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Testis=1,Brain_-_Cortex=1},PHF7->PHD_finger_protein_7,chr3:52444673-52457657:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	DMS153_LUNG	1	1	0.022	TRUE	1	3	0	2	1	TRUE	ACH-000594
DMS153_LUNG	RAB11FIP3--TRNAU1AP	2	0	RAB11FIP3	10174	chr16:546859:+	TRNAU1AP	29571	chr1:28897688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	SESTD1--DNAJC10	2	0	SESTD1	7261	chr2:180036847:-	DNAJC10	43766	chr2:183600976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SESTD1->SEC14_and_spectrin_domain_containing_1,chr2:179966419-180129517:-,DNAJC10->DnaJ_heat_shock_protein_family_(Hsp40)_member_C10,chr2:183580999-183659191:+	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	SHOC2--KDM6A	2	0	SHOC2	4726	chr10:112724819:+	KDM6A	42231	chrX:44949968:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SHOC2->SHOC2_leucine-rich_repeat_scaffold_protein,chr10:112679301-112773425:+,KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	ZZZ3--NRD1	2	0	ZZZ3	1835	chr1:78148270:-	NRD1	27655	chr1:52306186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3,NRD1->chr1:52254863-52344477:-	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	RP11-681L8.1--STPG2	1	2	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.022	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	DMS153_LUNG	1	1	0.033	TRUE	0	4	1	7	4	TRUE	ACH-000594
DMS153_LUNG	RP11-681L8.1--STPG2	1	2	RP11-681L8.1	3504	chr4:98313793:-	STPG2	23575	chr4:98184732:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.011	0.022	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	DMS153_LUNG	1	1	0.033	TRUE	0	4	0	2	4	TRUE	ACH-000594
DMS153_LUNG	NBPF3--RP11-399E6.1	1	1	NBPF3	21921	chr1:21805893:+	RP11-399E6.1	31861	chr1:41726415:+	ONLY_REF_SPLICE	NO	19	0	0.1	1	0.011	0.011	NBPF3->chr1:21766621-21811498:+,neuroblastoma_breakpoint_family_member_3,RP11-399E6.1->chr1:41708045-41750533:+	DMS153_LUNG	0.1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.011	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	DMS153_LUNG	1	1	0.022	TRUE	0	1	0	3	1	TRUE	ACH-000594
DMS153_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.011	0.011	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	DMS153_LUNG	1	1	0.022	TRUE	0	6	0	7	6	TRUE	ACH-000594
T84_LARGE_INTESTINE	PTPN23--ELP6	257	63	PTPN23	2245	chr3:47437707:+	ELP6	17645	chr3:47552716:-	ONLY_REF_SPLICE	YES	17	34	0.95	0.9	1.844	0.452	LOCAL_INVERSION:+:-:[82199],PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23,ELP6->chr3:47537130-47555251:-,elongator_acetyltransferase_complex_subunit_6	T84_LARGE_INTESTINE	0.9	0.95	2.296	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	ELP6--PTPN23	37	20	ELP6	1225	chr3:47555027:-	PTPN23	16500	chr3:47446142:+	ONLY_REF_SPLICE	YES	24	15	0.7	0.79	0.2655	0.1435	LOCAL_INVERSION:-:+:[82199],ELP6->chr3:47537130-47555251:-,elongator_acetyltransferase_complex_subunit_6,PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23	T84_LARGE_INTESTINE	0.7	0.79	0.409	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	PRPF6--HUNK	15	7	PRPF6	1182	chr20:62612669:+	HUNK	29525	chr21:33331155:+	ONLY_REF_SPLICE	YES	164	7	0.12	0.76	0.1076	0.0502	PRPF6->chr20:62612488-62664453:+,pre-mRNA_processing_factor_6,HUNK->chr21:33245628-33416946:+,hormonally_up-regulated_Neu-associated_kinase	T84_LARGE_INTESTINE	0.12	0.76	0.1578	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MECOM--EZH2	15	2	MECOM	3693	chr3:169098975:-	EZH2	37700	chr7:148544397:-	ONLY_REF_SPLICE	YES	3	30	0.85	0.36	0.1076	0.0144	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	T84_LARGE_INTESTINE	0.36	0.85	0.122	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	PTPN23--ELP6	11	17	PTPN23	2245	chr3:47437707:+	ELP6	19916	chr3:47545938:-	ONLY_REF_SPLICE	YES	17	77	0.62	0.27	0.0789	0.122	LOCAL_INVERSION:+:-:[82199],PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23,ELP6->chr3:47537130-47555251:-,elongator_acetyltransferase_complex_subunit_6	T84_LARGE_INTESTINE	0.27	0.62	0.2009	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	ELP6--PTPN23	2	21	ELP6	1571	chr3:47554681:-	PTPN23	16500	chr3:47446142:+	ONLY_REF_SPLICE	YES	30	15	0.43	0.61	0.0144	0.1507	LOCAL_INVERSION:-:+:[82199],ELP6->chr3:47537130-47555251:-,elongator_acetyltransferase_complex_subunit_6,PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23	T84_LARGE_INTESTINE	0.43	0.61	0.1651	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	CCDC12--KHDRBS3	6	1	CCDC12	6415	chr3:46982488:-	KHDRBS3	17063	chr8:136533480:+	ONLY_REF_SPLICE	YES	137	5	0.05	0.58	0.0431	0.0072	CCDC12->chr3:46963216-47023500:-,coiled-coil_domain_containing_12,KHDRBS3->KH_domain_containing,_RNA_binding,_signal_transduction_associated_3,chr8:136469700-136668965:+	T84_LARGE_INTESTINE	0.05	0.58	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	ATP13A1--ZNF14	5	3	ATP13A1	13480	chr19:19760376:-	ZNF14	21185	chr19:19825296:-	ONLY_REF_SPLICE	YES	143	6	0.05	0.57	0.0359	0.0215	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:-:[46778],ATP13A1->ATPase_13A1,chr19:19756007-19774502:-,ZNF14->chr19:19821280-19843906:-,zinc_finger_protein_14	T84_LARGE_INTESTINE	0.05	0.57	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	ELP6--PTPN23	2	9	ELP6	1225	chr3:47555027:-	PTPN23	16853	chr3:47446495:+	ONLY_REF_SPLICE	YES	24	23	0.31	0.32	0.0144	0.0646	LOCAL_INVERSION:-:+:[82199],ELP6->chr3:47537130-47555251:-,elongator_acetyltransferase_complex_subunit_6,PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23	T84_LARGE_INTESTINE	0.31	0.32	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	CPSF6--CREBZF	4	0	CPSF6	11046	chr12:69656342:+	CREBZF	22587	chr11:85374645:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx_v2:{count=3;pct=0.03%;dist=Breast_-_Mammary_Tissue=1,Cells_-_EBV-transformed_lymphocytes=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CREBZF->CREB/ATF_bZIP_transcription_factor,chr11:85370752-85393951:-	T84_LARGE_INTESTINE	1	1	0.0287	TRUE	0	2	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MECOM--EZH2	4	0	MECOM	3693	chr3:169098975:-	EZH2	38407	chr7:148543690:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	T84_LARGE_INTESTINE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	WARS2--RP11-80B9.4	2	1	WARS2	4484	chr1:119618973:-	RP11-80B9.4	14671	chr1:240903153:-	ONLY_REF_SPLICE	YES	26	0	0.1	1	0.0144	0.0072	WARS2->chr1:119573839-119683294:-,tryptophanyl_tRNA_synthetase_2,_mitochondrial,RP11-80B9.4->chr1:240902719-240906911:-	T84_LARGE_INTESTINE	0.1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	ABL2--TIPRL	2	0	ABL2	1444	chr1:179198376:-	TIPRL	30472	chr1:168153140:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,TIPRL->TOR_signaling_pathway_regulator,chr1:168148171-168169950:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	ACTR8--SLC19A1	2	0	ACTR8	2708	chr3:53913966:-	SLC19A1	24617	chr21:46952062:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	ACTR8->ARP8_actin-related_protein_8_homolog,chr3:53901093-53916229:-,SLC19A1->Oncogene{Bushman},chr21:46913486-46964325:-,solute_carrier_family_19_member_1	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	GSE1--ZMYM4	2	0	GSE1	4784	chr16:85682357:+	ZMYM4	34621	chr1:35846860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	IFI27--FAM136A	2	0	IFI27	4179	chr14:94578119:+	FAM136A	13204	chr2:70528112:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,FAM136A->chr2:70523107-70529222:-,family_with_sequence_similarity_136_member_A	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MAD1L1--ADRBK1	2	0	MAD1L1	19401	chr7:2188787:-	ADRBK1	46242	chr11:67044743:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	POLR3K--PTCD3	2	0	POLR3K	1153	chr16:103476:-	PTCD3	28182	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	PPP6R3--CHKA	2	0	PPP6R3	14231	chr11:68326147:+	CHKA	41030	chr11:67864597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	RAB17--CDV3	2	0	RAB17	2735	chr2:238499110:-	CDV3	15049	chr3:133293883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	RAB17->RAB17,_member_RAS_oncogene_family,chr2:238482965-238510257:-,CDV3->CDV3_homolog,chr3:133292574-133309105:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	SLC12A9--PQLC2	2	0	SLC12A9	4264	chr7:100452376:+	PQLC2	24806	chr1:19655066:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	SLC12A9->chr7:100424442-100464631:+,solute_carrier_family_12_member_9,PQLC2->PQ_loop_repeat_containing_2,chr1:19638820-19655794:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	SLC38A10--BAIAP2	2	0	SLC38A10	12104	chr17:79249769:-	BAIAP2	52580	chr17:79089570:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10,BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	1	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	STXBP5--EPB41L2	2	0	STXBP5	1258	chr6:147525818:+	EPB41L2	44791	chr6:131277639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,EPB41L2->chr6:131160487-131384462:-,erythrocyte_membrane_protein_band_4.1_like_2	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	TMEM123--ERC1	2	0	TMEM123	2732	chr11:102323255:-	ERC1	22640	chr12:1213916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	ZNF519--HMGB1	2	0	ZNF519	11625	chr18:14084876:-	HMGB1	27243	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
TEN_ENDOMETRIUM	STARD3--IKZF3	162	21	STARD3	1167	chr17:37793484:+	IKZF3	16107	chr17:37988404:-	ONLY_REF_SPLICE	YES	116	0	0.61	1	1.8551	0.2405	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	TEN_ENDOMETRIUM	0.61	1	2.0956	TRUE	0	1	0	1	1	TRUE	ACH-000397
TEN_ENDOMETRIUM	PARP12--DENND2A	89	27	PARP12	2200	chr7:139762322:-	DENND2A	45880	chr7:140218538:-	ONLY_REF_SPLICE	YES	22	2	0.84	0.98	1.0192	0.3092	PARP12->chr7:139723544-139763521:-,poly(ADP-ribose)_polymerase_family_member_12,DENND2A->DENN_domain_containing_2A,chr7:140218220-140373793:-	TEN_ENDOMETRIUM	0.84	0.98	1.3284	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	DGCR8--AATF	75	32	DGCR8	3451	chr22:20074206:+	AATF	34490	chr17:35413901:+	ONLY_REF_SPLICE	YES	75	92	0.59	0.54	0.8589	0.3664	DGCR8->DGCR8_microprocessor_complex_subunit,chr22:20067755-20099400:+,AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+	TEN_ENDOMETRIUM	0.54	0.59	1.2253	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	NARS--TMX3	66	35	NARS	2589	chr18:55287801:-	TMX3	26404	chr18:66358598:-	ONLY_REF_SPLICE	YES	750	57	0.12	0.64	0.7558	0.4008	NARS->asparaginyl-tRNA_synthetase,chr18:55267888-55289445:-,TMX3->chr18:66340925-66382535:-,thioredoxin_related_transmembrane_protein_3	TEN_ENDOMETRIUM	0.12	0.64	1.1566	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	ATG7--SLC6A11	54	42	ATG7	18658	chr3:11383753:+	SLC6A11	47322	chr3:10953775:+	ONLY_REF_SPLICE	YES	53	0	0.64	1	0.6184	0.481	ATG7->autophagy_related_7,chr3:11313995-11599139:+,SLC6A11->chr3:10857885-10982419:+,solute_carrier_family_6_member_11	TEN_ENDOMETRIUM	0.64	1	1.0994	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	WNK1--CCDC77	46	36	WNK1	2732	chr12:863490:+	CCDC77	48057	chr12:514677:+	ONLY_REF_SPLICE	YES	246	17	0.25	0.83	0.5268	0.4123	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	TEN_ENDOMETRIUM	0.25	0.83	0.9391	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	VMP1--ZNF521	45	26	VMP1	10238	chr17:57851246:+	ZNF521	42480	chr18:22642705:-	ONLY_REF_SPLICE	YES	473	0	0.13	1	0.5153	0.2977	VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,ZNF521->Oncogene{Bushman},chr18:22641890-22932154:-,zinc_finger_protein_521	TEN_ENDOMETRIUM	0.13	1	0.813	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	WNK1--CCDC77	39	27	WNK1	2732	chr12:863490:+	CCDC77	50525	chr12:520913:+	ONLY_REF_SPLICE	YES	246	63	0.21	0.51	0.4466	0.3092	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	TEN_ENDOMETRIUM	0.21	0.51	0.7558	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	CTNNA1--UBR3	30	26	CTNNA1	29393	chr5:138253587:+	UBR3	42644	chr2:170728746:+	ONLY_REF_SPLICE	YES	1057	49	0.05	0.53	0.3435	0.2977	CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative)	TEN_ENDOMETRIUM	0.05	0.53	0.6412	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	EFCAB13--LRRC37A17P	31	22	EFCAB13	4732	chr17:45405749:+	LRRC37A17P	45400	chr17:45124512:+	ONLY_REF_SPLICE	YES	40	2	0.57	0.96	0.355	0.2519	EFCAB13->EF-hand_calcium_binding_domain_13,chr17:45400656-45518678:+,LRRC37A17P->chr17:45055847-45131935:+,leucine-rich_repeat_containing_37_member_A17,_pseudogene	TEN_ENDOMETRIUM	0.57	0.96	0.6069	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	PBX3--CASR	26	24	PBX3	2279	chr9:128510902:+	CASR	22762	chr3:121972795:+	ONLY_REF_SPLICE	YES	27	0	0.65	1	0.2977	0.2748	PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,CASR->calcium_sensing_receptor,chr3:121902530-122005342:+	TEN_ENDOMETRIUM	0.65	1	0.5725	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	PTPRJ--MKNK2	26	12	PTPRJ	10879	chr11:48149595:+	MKNK2	36536	chr19:2043581:-	ONLY_REF_SPLICE	YES	114	469	0.25	0.07	0.2977	0.1374	PTPRJ->Oncogene{Bushman},chr11:48002113-48189670:+,protein_tyrosine_phosphatase,_receptor_type_J,MKNK2->MAP_kinase_interacting_serine/threonine_kinase_2,chr19:2037470-2051243:-	TEN_ENDOMETRIUM	0.07	0.25	0.4351	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	FBXW4--C10orf76	25	13	FBXW4	9298	chr10:103384502:-	C10orf76	38990	chr10:103649247:-	ONLY_REF_SPLICE	YES	35	61	0.52	0.38	0.2863	0.1489	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Brain_-_Hippocampus=1},FBXW4->F-box_and_WD_repeat_domain_containing_4,Oncogene{Bushman},chr10:103370423-103455052:-,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	TEN_ENDOMETRIUM	0.38	0.52	0.4352	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	BTAF1--MARCH5	25	10	BTAF1	31550	chr10:93776222:+	MARCH5	43654	chr10:94070892:+	ONLY_REF_SPLICE	YES	39	97	0.47	0.27	0.2863	0.1145	BTAF1->B-TFIID_TATA-box_binding_protein_associated_factor_1,chr10:93683526-93790082:+,MARCH5->chr10:94050920-94113721:+,membrane_associated_ring-CH-type_finger_5	TEN_ENDOMETRIUM	0.27	0.47	0.4008	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	KMT2A--CD3G	21	16	KMT2A	11400	chr11:118345030:+	CD3G	53622	chr11:118219742:+	ONLY_REF_SPLICE	YES	52	0	0.42	1	0.2405	0.1832	LOCAL_REARRANGEMENT:+:[81329],KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,CD3G->CD3g_molecule,chr11:118215059-118225876:+	TEN_ENDOMETRIUM	0.42	1	0.4237	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	NOTCH2--SEC22B	17	13	NOTCH2	12808	chr1:120529583:-	SEC22B	55150	chr1:145109524:+	ONLY_REF_SPLICE	YES	56	486	0.35	0.06	0.1947	0.1489	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	TEN_ENDOMETRIUM	0.06	0.35	0.3436	TRUE	0	0	0	2	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	GLE1--CERCAM	13	25	GLE1	1205	chr9:131267183:+	CERCAM	20860	chr9:131181439:+	ONLY_REF_SPLICE	YES	34	0	0.53	1	0.1489	0.2863	LOCAL_REARRANGEMENT:+:[67353],GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+,CERCAM->cerebral_endothelial_cell_adhesion_molecule,chr9:131174030-131199626:+	TEN_ENDOMETRIUM	0.53	1	0.4352	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	ANKHD1--AE000661.37	14	9	ANKHD1	7029	chr5:139825560:+	AE000661.37	46424	chr14:22934278:-	ONLY_REF_SPLICE	YES	121	0	0.16	1	0.1603	0.1031	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,AE000661.37->chr14:22849083-22951948:-	TEN_ENDOMETRIUM	0.16	1	0.2634	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	KDELR1--BCAT2	13	11	KDELR1	3001	chr19:48892810:-	BCAT2	16767	chr19:49300590:-	ONLY_REF_SPLICE	YES	571	82	0.04	0.23	0.1489	0.126	KDELR1->KDEL_endoplasmic_reticulum_protein_retention_receptor_1,chr19:48885827-48894810:-,BCAT2->branched_chain_amino_acid_transaminase_2,chr19:49298319-49314286:-	TEN_ENDOMETRIUM	0.04	0.23	0.2749	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	CCNF--ABCA17P	14	5	CCNF	4434	chr16:2485874:+	ABCA17P	39950	chr16:2456829:+	INCL_NON_REF_SPLICE	YES	102	3	0.16	0.86	0.1603	0.0573	LOCAL_REARRANGEMENT:+:[2695],CCNF->Oncogene{Bushman},chr16:2479395-2508855:+,cyclin_F,ABCA17P->ATP_binding_cassette_subfamily_A_member_17,_pseudogene,chr16:2389151-2476700:+	TEN_ENDOMETRIUM	0.16	0.86	0.2176	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	WNK1--CCDC77	7	30	WNK1	2732	chr12:863490:+	CCDC77	49111	chr12:518534:+	ONLY_REF_SPLICE	YES	246	32	0.13	0.54	0.0802	0.3435	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	TEN_ENDOMETRIUM	0.13	0.54	0.4237	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	ANKHD1--AE000661.37	12	9	ANKHD1	7029	chr5:139825560:+	AE000661.37	45306	chr14:22950347:-	ONLY_REF_SPLICE	YES	121	0	0.15	1	0.1374	0.1031	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,AE000661.37->chr14:22849083-22951948:-	TEN_ENDOMETRIUM	0.15	1	0.2405	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	TPST1--CCT6P1	11	10	TPST1	4708	chr7:65706257:+	CCT6P1	24732	chr7:65227934:+	ONLY_REF_SPLICE	YES	93	15	0.18	0.58	0.126	0.1145	TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,CCT6P1->chaperonin_containing_TCP1_subunit_6_pseudogene_1,chr7:65216129-65228341:+	TEN_ENDOMETRIUM	0.18	0.58	0.2405	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	CCNF--ABCA17P	8	18	CCNF	4434	chr16:2485874:+	ABCA17P	38563	chr16:2454068:+	ONLY_REF_SPLICE	YES	102	0	0.2	1	0.0916	0.2061	LOCAL_REARRANGEMENT:+:[2695],CCNF->Oncogene{Bushman},chr16:2479395-2508855:+,cyclin_F,ABCA17P->ATP_binding_cassette_subfamily_A_member_17,_pseudogene,chr16:2389151-2476700:+	TEN_ENDOMETRIUM	0.2	1	0.2977	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	PBX3--CASR	10	7	PBX3	2279	chr9:128510902:+	CASR	25747	chr3:121980375:+	ONLY_REF_SPLICE	YES	27	14	0.39	0.55	0.1145	0.0802	PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,CASR->calcium_sensing_receptor,chr3:121902530-122005342:+	TEN_ENDOMETRIUM	0.39	0.55	0.1947	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	NOTCH2--SEC22B	7	8	NOTCH2	12808	chr1:120529583:-	SEC22B	56311	chr1:145112373:+	ONLY_REF_SPLICE	YES	56	377	0.21	0.04	0.0802	0.0916	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	TEN_ENDOMETRIUM	0.04	0.21	0.1718	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	DGCR8--AATF	7	5	DGCR8	1152	chr22:20067906:+	AATF	34490	chr17:35413901:+	ONLY_REF_SPLICE	YES	37	92	0.24	0.12	0.0802	0.0573	DGCR8->DGCR8_microprocessor_complex_subunit,chr22:20067755-20099400:+,AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+	TEN_ENDOMETRIUM	0.12	0.24	0.1375	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	TPST1--CCT6P1	7	4	TPST1	1324	chr7:65670509:+	CCT6P1	24732	chr7:65227934:+	ONLY_REF_SPLICE	YES	256	15	0.04	0.42	0.0802	0.0458	TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,CCT6P1->chaperonin_containing_TCP1_subunit_6_pseudogene_1,chr7:65216129-65228341:+	TEN_ENDOMETRIUM	0.04	0.42	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	ANKHD1--AE000661.37	5	5	ANKHD1	7029	chr5:139825560:+	AE000661.37	51450	chr14:22872164:-	ONLY_REF_SPLICE	YES	121	3	0.08	0.77	0.0573	0.0573	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,AE000661.37->chr14:22849083-22951948:-	TEN_ENDOMETRIUM	0.08	0.77	0.1146	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	ATG7--SLC6A11	2	17	ATG7	18658	chr3:11383753:+	SLC6A11	48426	chr3:10960014:+	ONLY_REF_SPLICE	YES	53	6	0.26	0.76	0.0229	0.1947	ATG7->autophagy_related_7,chr3:11313995-11599139:+,SLC6A11->chr3:10857885-10982419:+,solute_carrier_family_6_member_11	TEN_ENDOMETRIUM	0.26	0.76	0.2176	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	STARD3--IKZF3	1	21	STARD3	1451	chr17:37793768:+	IKZF3	16107	chr17:37988404:-	ONLY_REF_SPLICE	YES	195	0	0.1	1	0.0115	0.2405	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	TEN_ENDOMETRIUM	0.1	1	0.252	TRUE	0	1	0	1	1	TRUE	ACH-000397
TEN_ENDOMETRIUM	ANKHD1--AE000661.37	4	8	ANKHD1	7029	chr5:139825560:+	AE000661.37	49869	chr14:22887925:-	ONLY_REF_SPLICE	YES	121	0	0.09	1	0.0458	0.0916	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,AE000661.37->chr14:22849083-22951948:-	TEN_ENDOMETRIUM	0.09	1	0.1374	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	RP11-381N20.2--SPRY1	5	3	RP11-381N20.2	2449	chr4:124418099:+	SPRY1	7356	chr4:124318766:+	ONLY_REF_SPLICE	YES	0	125	1	0.06	0.0573	0.0344	LOCAL_REARRANGEMENT:+:[86513],RP11-381N20.2->chr4:124411423-124443261:+,SPRY1->chr4:124317950-124324910:+,sprouty_RTK_signaling_antagonist_1	TEN_ENDOMETRIUM	0.06	1	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	GMCL1--AC092431.3	4	3	GMCL1	1511	chr2:70057284:+	AC092431.3	23296	chr2:69927507:-	ONLY_REF_SPLICE	YES	62	0	0.1	1	0.0458	0.0344	GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,AC092431.3->chr2:69927324-69940979:-	TEN_ENDOMETRIUM	0.1	1	0.0802	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	STARD3--IKZF3	1	14	STARD3	1167	chr17:37793484:+	IKZF3	17161	chr17:37985741:-	ONLY_REF_SPLICE	NO	116	1	0.11	0.94	0.0115	0.1603	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	TEN_ENDOMETRIUM	0.11	0.94	0.1718	TRUE	0	1	0	1	1	TRUE	ACH-000397
TEN_ENDOMETRIUM	RP11-381N20.1--SPRY1	4	1	RP11-381N20.1	3016	chr4:124448430:+	SPRY1	7083	chr4:124318766:+	INCL_NON_REF_SPLICE	YES	16	125	0.24	0.04	0.0458	0.0115	RP11-381N20.1->chr4:124426434-124448680:+,SPRY1->chr4:124317950-124324910:+,sprouty_RTK_signaling_antagonist_1	TEN_ENDOMETRIUM	0.04	0.24	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	STARD3--IKZF3	2	9	STARD3	1167	chr17:37793484:+	IKZF3	18263	chr17:37949186:-	ONLY_REF_SPLICE	YES	116	25	0.09	0.31	0.0229	0.1031	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	TEN_ENDOMETRIUM	0.09	0.31	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	LUC7L3--CRHR1	4	0	LUC7L3	1288	chr17:48797192:+	CRHR1	28991	chr17:43884376:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	LUC7L3->LUC7_like_3_pre-mRNA_splicing_factor,chr17:48796905-48833574:+,CRHR1->chr17:43699267-43913194:+,corticotropin_releasing_hormone_receptor_1	TEN_ENDOMETRIUM	1	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	ST3GAL6-AS1--DCBLD2	4	0	ST3GAL6-AS1	1226	chr3:98451270:-	DCBLD2	13222	chr3:98568442:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:-:[63290],ST3GAL6-AS1->ST3GAL6_antisense_RNA_1,chr3:98433174-98451495:-,DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2	TEN_ENDOMETRIUM	1	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	CCNF--ABCA17P	1	10	CCNF	4434	chr16:2485874:+	ABCA17P	39725	chr16:2456604:+	ONLY_REF_SPLICE	YES	102	3	0.1	0.79	0.0115	0.1145	LOCAL_REARRANGEMENT:+:[2695],CCNF->Oncogene{Bushman},chr16:2479395-2508855:+,cyclin_F,ABCA17P->ATP_binding_cassette_subfamily_A_member_17,_pseudogene,chr16:2389151-2476700:+	TEN_ENDOMETRIUM	0.1	0.79	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	FBXW4--C10orf76	1	10	FBXW4	6143	chr10:103427643:-	C10orf76	38990	chr10:103649247:-	ONLY_REF_SPLICE	YES	37	61	0.23	0.15	0.0115	0.1145	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Brain_-_Hippocampus=1},FBXW4->F-box_and_WD_repeat_domain_containing_4,Oncogene{Bushman},chr10:103370423-103455052:-,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	TEN_ENDOMETRIUM	0.15	0.23	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	C3--ALDOA	3	0	C3	9040	chr19:6712304:-	ALDOA	43391	chr16:30080226:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	GTEx&tcga_normals:2/3694=0.05%,C3->chr19:6677715-6730573:-,complement_component_3,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	TEN_ENDOMETRIUM	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	CREB1--RXFP1	2	0	CREB1	1398	chr2:208394858:+	RXFP1	38006	chr4:159529124:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CREB1->Oncogene{Bushman},cAMP_responsive_element_binding_protein_1,chr2:208394461-208468155:+,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	TEN_ENDOMETRIUM	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	CTNNA1--KLHL23	2	0	CTNNA1	4381	chr5:138059314:+	KLHL23	45598	chr2:170591523:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,KLHL23->chr2:170550998-170633499:+,kelch_like_family_member_23	TEN_ENDOMETRIUM	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	LEPR--MEIS2	2	0	LEPR	2252	chr1:65891061:+	MEIS2	47567	chr15:37329160:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LEPR->chr1:65886248-66107242:+,leptin_receptor,MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-	TEN_ENDOMETRIUM	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	TRIM26--MYL12B	2	0	TRIM26	1123	chr6:30181082:-	MYL12B	16967	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	TRIM26->chr6:30152232-30181204:-,tripartite_motif_containing_26,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	TEN_ENDOMETRIUM	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	UQCRC2--CCDC43	2	0	UQCRC2	14109	chr16:21987564:+	CCDC43	28224	chr17:42750893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,CCDC43->chr17:42750437-42767147:-,coiled-coil_domain_containing_43	TEN_ENDOMETRIUM	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	KMT2A--CD3G	1	1	KMT2A	7746	chr11:118339559:+	CD3G	53622	chr11:118219742:+	ONLY_REF_SPLICE	YES	32	0	0.06	1	0.0115	0.0115	LOCAL_REARRANGEMENT:+:[81329],KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,CD3G->CD3g_molecule,chr11:118215059-118225876:+	TEN_ENDOMETRIUM	0.06	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000397
KP3_PANCREAS	CBLC--CEACAM16	11	9	CBLC	7355	chr19:45295771:+	CEACAM16	18857	chr19:45211133:+	ONLY_REF_SPLICE	YES	3	0	0.87	1	0.1576	0.1289	LOCAL_REARRANGEMENT:+:[67140],CBLC->Cbl_proto-oncogene_C,Oncogene{Bushman},chr19:45281126-45303891:+,CEACAM16->carcinoembryonic_antigen_related_cell_adhesion_molecule_16,chr19:45202421-45213986:+	KP3_PANCREAS	0.87	1	0.2865	TRUE	0	0	0	1	0	TRUE	ACH-000108
KP3_PANCREAS	HIPK3--ADPGK	6	2	HIPK3	5118	chr11:33309057:+	ADPGK	27135	chr15:73067438:-	ONLY_REF_SPLICE	YES	26	68	0.24	0.11	0.086	0.0287	{Klijn_CCL:Pancreas=1},HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	KP3_PANCREAS	0.11	0.24	0.1147	TRUE	0	0	0	1	0	TRUE	ACH-000108
KP3_PANCREAS	TMSB10--TMSB4X	6	0	TMSB10	1438	chr2:85133186:+	TMSB4X	6247	chrX:12994426:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.086	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	KP3_PANCREAS	1	1	0.086	TRUE	0	1	0	17	1	TRUE	ACH-000108
KP3_PANCREAS	HIPK3--CAT	2	0	HIPK3	6242	chr11:33350179:+	CAT	25535	chr11:34470739:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3,CAT->catalase,chr11:34460472-34493609:+	KP3_PANCREAS	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000108
KP3_PANCREAS	LMNA--SMIM12	2	0	LMNA	8776	chr1:156085065:+	SMIM12	27289	chr1:35321583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	LMNA->chr1:156052364-156109880:+,lamin_A/C,SMIM12->chr1:35178338-35325417:-,small_integral_membrane_protein_12	KP3_PANCREAS	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000108
KP3_PANCREAS	MINOS1--ZNF638	2	0	MINOS1	1127	chr1:19923603:+	ZNF638	25312	chr2:71582849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	KP3_PANCREAS	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000108
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	117	32	KMT2A	16644	chr11:118353210:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	16	0	0.9	1	1.4369	0.393	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	1.8299	TRUE	0	1	0	1	1	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TKTL1--FLNA	3	426	TKTL1	3920	chrX:153537794:+	FLNA	38431	chrX:153577352:-	INCL_NON_REF_SPLICE	YES	0	2	1	1	0.0368	5.2319	LOCAL_INVERSION:+:-:[18192],TKTL1->chrX:153524024-153558700:+,transketolase-like_1,FLNA->chrX:153576892-153603006:-,filamin_A	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	5.2687	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTBP2--PTEN	91	25	CTBP2	8057	chr10:126799559:-	PTEN	33854	chr10:89690803:+	ONLY_REF_SPLICE	YES	19	43	0.86	0.73	1.1176	0.307	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.86	1.4246	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B4GALT1--FAM205CP	81	47	B4GALT1	2835	chr9:33135187:-	FAM205CP	15947	chr9:34895081:-	ONLY_REF_SPLICE	YES	47	0	0.73	1	0.9948	0.5772	B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,FAM205CP->chr9:34889061-34895775:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	1.572	TRUE	0	1	0	1	1	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX39B--CSNK2A1	59	25	DDX39B	6942	chr6:31503144:-	CSNK2A1	19777	chr20:489304:-	ONLY_REF_SPLICE	YES	761	67	0.1	0.56	0.7246	0.307	DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-,CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.56	1.0316	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTBP2--PTEN	23	0	CTBP2	1852	chr10:126848888:-	PTEN	33854	chr10:89690803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2825	0	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2825	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAP1--POLR1E	11	5	UBAP1	1236	chr9:34179238:+	POLR1E	14923	chr9:37486036:+	INCL_NON_REF_SPLICE	YES	78	3	0.17	0.84	0.1351	0.0614	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,POLR1E->chr9:37485932-37503694:+,polymerase_(RNA)_I_subunit_E	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.84	0.1965	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTBP2--PTEN	5	28	CTBP2	10372	chr10:126776760:-	PTEN	33854	chr10:89690803:+	ONLY_REF_SPLICE	YES	18	43	0.65	0.43	0.0614	0.3439	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.65	0.4053	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-197B17.3--RPAP3	12	0	RP1-197B17.3	1079	chr12:48099946:+	RPAP3	14332	chr12:48096629:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1474	0	LOCAL_INVERSION:+:-:[24],RP1-197B17.3->chr12:48099868-48136077:+,RPAP3->RNA_polymerase_II_associated_protein_3,chr12:48057070-48099844:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1474	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNAPC3--KMT2A	9	2	SNAPC3	9539	chr9:15458065:+	KMT2A	37837	chr11:118359329:+	ONLY_REF_SPLICE	YES	48	8	0.19	0.58	0.1105	0.0246	SNAPC3->Oncogene{Bushman},chr9:15422702-15465951:+,small_nuclear_RNA_activating_complex_polypeptide_3,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.58	0.1351	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAV2--ELAVL2	8	6	VAV2	1530	chr9:136857197:-	ELAVL2	44946	chr9:23762247:-	ONLY_REF_SPLICE	YES	16	1	0.47	0.93	0.0983	0.0737	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,ELAVL2->ELAV_like_neuron-specific_RNA_binding_protein_2,chr9:23690102-23826335:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.93	0.172	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	4	17	KMT2A	16241	chr11:118352807:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	13	0	0.62	1	0.0491	0.2088	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.2579	TRUE	0	1	0	1	1	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGB2--FTL	5	0	ITGB2	22865	chr21:46306705:-	FTL	26825	chr19:49468680:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0614	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ITGB2->chr21:46305868-46351904:-,integrin_subunit_beta_2,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0614	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYL6--CSDE1	4	0	MYL6	2462	chr12:56553406:+	CSDE1	17351	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0491	0	MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0491	TRUE	0	1	0	3	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTBP2--PTEN	3	0	CTBP2	1344	chr10:126849396:-	PTEN	33854	chr10:89690803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC1--DAPK2	3	0	HERC1	16534	chr15:64026923:-	DAPK2	92020	chr15:64332466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[73094],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IRF2BP2--PTMA	3	0	IRF2BP2	3139	chr1:234743133:-	PTMA	10899	chr2:232573246:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTBP2--PTEN	1	5	CTBP2	5741	chr10:126822081:-	PTEN	33854	chr10:89690803:+	ONLY_REF_SPLICE	YES	11	43	0.35	0.12	0.0123	0.0614	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.35	0.0737	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTBP2--PTEN	1	1	CTBP2	3396	chr10:126847204:-	PTEN	33854	chr10:89690803:+	ONLY_REF_SPLICE	YES	7	43	0.22	0.04	0.0123	0.0123	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.22	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000146
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DISC1FP1--STX8	537	62	DISC1FP1	1086	chr11:89984485:+	STX8	26545	chr17:9408479:-	ONLY_REF_SPLICE	YES	1	131	1	0.82	6.933	0.8005	DISC1FP1->DISC1_fusion_partner_1_(non-protein_coding),chr11:89984400-90648220:+,STX8->chr17:9153788-9479908:-,syntaxin_8	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	7.7335	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DISC1FP1--STX8	79	38	DISC1FP1	1086	chr11:89984485:+	STX8	27670	chr17:9395238:-	ONLY_REF_SPLICE	YES	1	184	0.99	0.39	1.0199	0.4906	DISC1FP1->DISC1_fusion_partner_1_(non-protein_coding),chr11:89984400-90648220:+,STX8->chr17:9153788-9479908:-,syntaxin_8	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.99	1.5105	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIF13A--TPMT	46	55	KIF13A	19301	chr6:17817251:-	TPMT	51621	chr6:18149402:-	ONLY_REF_SPLICE	YES	36	0	0.74	1	0.5939	0.7101	{Klijn_CCL:Head-Neck=1,Lymphoid=1},KIF13A->chr6:17759414-17987854:-,kinesin_family_member_13A,TPMT->chr6:18128542-18155305:-,thiopurine_S-methyltransferase	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	1.304	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARIH2--DAG1	29	35	ARIH2	7108	chr3:48965246:+	DAG1	38058	chr3:49547852:+	ONLY_REF_SPLICE	YES	120	36	0.35	0.64	0.3744	0.4519	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.64	0.8263	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARIH2--DAG1	15	45	ARIH2	9799	chr3:48982614:+	DAG1	38058	chr3:49547852:+	ONLY_REF_SPLICE	YES	104	36	0.37	0.62	0.1937	0.581	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.62	0.7747	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANK1--CCDC144NL	18	25	ANK1	34232	chr8:41545674:-	CCDC144NL	52430	chr17:20796775:-	ONLY_REF_SPLICE	YES	521	0	0.08	1	0.2324	0.3228	ANK1->ankyrin_1,chr8:41510739-41754280:-,CCDC144NL->chr17:20739760-20799453:-,coiled-coil_domain_containing_144_family,_N-terminal_like	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.5552	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--THBS2	21	7	ANKRD11	4629	chr16:89484692:-	THBS2	38393	chr6:169653991:-	ONLY_REF_SPLICE	YES	13	2	0.68	0.93	0.2711	0.0904	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,THBS2->Oncogene{Bushman},chr6:169615875-169654139:-,thrombospondin_2	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.93	0.3615	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DISC1FP1--STX8	7	36	DISC1FP1	1086	chr11:89984485:+	STX8	27675	chr17:9395233:-	INCL_NON_REF_SPLICE	YES	1	173	0.98	0.2	0.0904	0.4648	DISC1FP1->DISC1_fusion_partner_1_(non-protein_coding),chr11:89984400-90648220:+,STX8->chr17:9153788-9479908:-,syntaxin_8	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.98	0.5552	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF177--CCDC105	6	8	ZNF177	11889	chr19:9475624:+	CCDC105	25260	chr19:15131273:+	ONLY_REF_SPLICE	YES	41	1	0.25	0.93	0.0775	0.1033	ZNF177->chr19:9434850-9493293:+,chr19:9435021-9493293:+,zinc_finger_protein_177,CCDC105->chr19:15121556-15134081:+,coiled-coil_domain_containing_105	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.93	0.1808	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CGGBP1--PRICKLE2	5	8	CGGBP1	2284	chr3:88190120:-	PRICKLE2	19215	chr3:64148805:-	ONLY_REF_SPLICE	YES	10	0	0.57	1	0.0646	0.1033	CGGBP1->CGG_triplet_repeat_binding_protein_1,chr3:88101094-88199035:-,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.1679	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIF13A--TPMT	5	8	KIF13A	18087	chr6:17825999:-	TPMT	51621	chr6:18149402:-	ONLY_REF_SPLICE	YES	51	0	0.2	1	0.0646	0.1033	{Klijn_CCL:Head-Neck=1,Lymphoid=1},KIF13A->chr6:17759414-17987854:-,kinesin_family_member_13A,TPMT->chr6:18128542-18155305:-,thiopurine_S-methyltransferase	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.1679	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RP11-742N3.1	6	0	EIF1	1092	chr17:39845228:+	RP11-742N3.1	7786	chr11:82400572:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RP11-742N3.1->chr11:82400571-82400944:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFX3--GLIS3	5	4	RFX3	23640	chr9:3228847:-	GLIS3	55541	chr9:3937189:-	ONLY_REF_SPLICE	YES	114	15	0.07	0.38	0.0646	0.0516	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.38	0.1162	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D22B--ISM1	5	4	TBC1D22B	2259	chr6:37237426:+	ISM1	19195	chr20:13251151:+	ONLY_REF_SPLICE	YES	112	2	0.07	0.82	0.0646	0.0516	TBC1D22B->TBC1_domain_family_member_22B,chr6:37225548-37300746:+,ISM1->chr20:13202418-13281298:+,isthmin_1,_angiogenesis_inhibitor	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.82	0.1162	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--HMGA1	4	0	C17orf76-AS1	1593	chr17:16342728:+	HMGA1	15815	chr6:34208514:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	C17orf76-AS1->chr17:16342136-16381992:+,HMGA1->Oncogene{Bushman},chr6:34204650-34214008:+,high_mobility_group_AT-hook_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2251F13.1--PRKD1	4	0	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0516	TRUE	0	3	0	8	3	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RP11-742N3.1	4	0	EIF1	1098	chr17:39845234:+	RP11-742N3.1	7795	chr11:82400581:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RP11-742N3.1->chr11:82400571-82400944:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RP11-742N3.1	3	0	EIF1	1121	chr17:39845257:+	RP11-742N3.1	7825	chr11:82400611:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RP11-742N3.1->chr11:82400571-82400944:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-321K16.1--SLC25A48	2	1	CTC-321K16.1	4781	chr5:134965066:+	SLC25A48	10390	chr5:135178105:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0.0129	CTC-321K16.1->chr5:134895267-134970564:+,SLC25A48->chr5:135170338-135224326:+,solute_carrier_family_25_member_48	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	0	3	0	3	3	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLCG2--CMIP	1	5	PLCG2	4990	chr16:81819787:+	CMIP	70851	chr16:81730165:+	ONLY_REF_SPLICE	YES	12	86	0.33	0.07	0.0129	0.0646	LOCAL_REARRANGEMENT:+:[27335],PLCG2->ArcherDX_panel,FoundationOne_panel,chr16:81772702-81991899:+,phospholipase_C_gamma_2,CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.33	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALKBH1--ATL2	2	0	ALKBH1	7006	chr14:78141999:-	ATL2	18288	chr2:38570654:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ALKBH1->alkB_homolog_1,_histone_H2A_dioxygenase,chr14:78138747-78174363:-,ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKIB1--LARP1B	2	0	ANKIB1	16025	chr7:92000921:+	LARP1B	42525	chr4:129042981:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+,LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001171.1--LMBR1	2	0	AP001171.1	1269	chr21:21630865:-	LMBR1	34689	chr7:156472000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	AP001171.1->chr21:21629065-21631133:-,LMBR1->chr7:156461646-156685924:-,limb_development_membrane_protein_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf73--PICALM	2	0	C11orf73	3558	chr11:86017524:+	PICALM	14527	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1},C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	1	2	0	10	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBX5--NEDD4	2	0	CBX5	1095	chr12:54673792:-	NEDD4	25836	chr15:56258744:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CBX5->chr12:54624724-54673886:-,chromobox_5,NEDD4->chr15:56119120-56285944:-,neural_precursor_cell_expressed,_developmentally_down-regulated_4,_E3_ubiquitin_protein_ligase	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK14--ZNHIT1	2	0	CDK14	18269	chr7:90528668:+	ZNHIT1	40651	chr7:100866758:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14,ZNHIT1->chr7:100860949-100867471:+,zinc_finger_HIT-type_containing_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CFH--WDR70	2	0	CFH	9262	chr1:196654367:+	WDR70	33212	chr5:37396477:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CFH->chr1:196621008-196716634:+,complement_factor_H,WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	1	0	7	1	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DUS2--COG8	2	0	DUS2	22572	chr16:68112421:+	COG8	34405	chr16:69363082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	DUS2->chr16:68021649-68113223:+,dihydrouridine_synthase_2,COG8->chr16:69354043-69373570:-,component_of_oligomeric_golgi_complex_8	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ICAM5--MXI1	2	0	ICAM5	6632	chr19:10406288:+	MXI1	15476	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ICAM5->Oncogene{Bushman},chr19:10400657-10407454:+,intercellular_adhesion_molecule_5,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INIP--PTBP3	2	0	INIP	2331	chr9:115478741:-	PTBP3	16342	chr9:115060196:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KSR1--DISC1FP1	2	0	KSR1	4646	chr17:25877734:+	DISC1FP1	42215	chr11:90279922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	KSR1->Oncogene{Bushman},chr17:25783670-25953461:+,kinase_suppressor_of_ras_1,DISC1FP1->DISC1_fusion_partner_1_(non-protein_coding),chr11:89984400-90648220:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	METAP1D--MTX2	2	0	METAP1D	1427	chr2:172864916:+	MTX2	20252	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	METAP1D->chr2:172864490-172947158:+,methionyl_aminopeptidase_type_1D_(mitochondrial),MTX2->chr2:177134123-177202753:+,metaxin_2	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POU2F1--TM2D1	2	0	POU2F1	1130	chr1:167190195:+	TM2D1	45688	chr1:62175109:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,TM2D1->TM2_domain_containing_1,chr1:62146718-62191095:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	2	0	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	16	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-864K19.4--RPS6KC1	2	0	RP5-864K19.4	1240	chr1:39325911:+	RPS6KC1	23556	chr1:213415912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	RP5-864K19.4->chr1:39325672-39385068:+,RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SREK1--RPS6KC1	2	0	SREK1	4141	chr5:65449424:+	RPS6KC1	44671	chr1:213415912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1,RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ST6GALNAC1--ZNF451	2	0	ST6GALNAC1	9380	chr17:74621901:-	ZNF451	30175	chr6:56989532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ST6GALNAC1->Oncogene{Bushman},ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_1,chr17:74620843-74639920:-,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D22B--JARID2	2	0	TBC1D22B	2259	chr6:37237426:+	JARID2	25001	chr6:15468773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	TBC1D22B->TBC1_domain_family_member_22B,chr6:37225548-37300746:+,JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIP12--RSF1	2	0	TRIP12	2222	chr2:230786596:-	RSF1	52996	chr11:77524747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12,RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR27--PSMB1	2	0	WDR27	1513	chr6:170101647:-	PSMB1	40763	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx_FI:{Spleen=[count:1=pct:0.9],Colon=[count:1=pct:0.5],Brain=[count:1=pct:0.2]},GTEx_v2:{count=7;pct=0.08%;dist=Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Thyroid=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Colon_-_Transverse=1},WDR27->WD_repeat_domain_27,chr6:169857307-170102159:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	4	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAGI2--PLVAP	1	3	MAGI2	1555	chr7:79082336:-	PLVAP	44959	chr19:17471641:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0129	0.0387	MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2,PLVAP->chr19:17462257-17488159:-,plasmalemma_vesicle_associated_protein	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NADK--GNB1	1	1	NADK	2712	chr1:1710185:-	GNB1	20514	chr1:1770677:-	ONLY_REF_SPLICE	YES	21	12	0.09	0.14	0.0129	0.0129	GTEx_FI:{Blood=[count:6=pct:3.4],Whole_Blood=[count:2=pct:1.5]},GTEx_v2:{count=3;pct=0.03%;dist=Whole_Blood=3},YOSHIHARA_TCGA_num_samples[HNSC:1|LGG:1],LOCAL_REARRANGEMENT:-:[4833],NADK->NAD_kinase,chr1:1682671-1711896:-,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.14	0.0258	TRUE	0	1	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMG6--ADAM2	1	1	SMG6	7606	chr17:2195846:-	ADAM2	53261	chr8:39627094:-	ONLY_REF_SPLICE	YES	33	0	0.06	1	0.0129	0.0129	SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-,ADAM2->ADAM_metallopeptidase_domain_2,chr8:39601254-39695808:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF177--CCDC105	1	1	ZNF177	7388	chr19:9451860:+	CCDC105	25260	chr19:15131273:+	ONLY_REF_SPLICE	NO	11	1	0.15	0.67	0.0129	0.0129	ZNF177->chr19:9434850-9493293:+,chr19:9435021-9493293:+,zinc_finger_protein_177,CCDC105->chr19:15121556-15134081:+,coiled-coil_domain_containing_105	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.67	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMP7--RBM38	6	0	BMP7	1925	chr20:55840761:-	RBM38	24461	chr20:55982599:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0	BMP7->bone_morphogenetic_protein_7,chr20:55743804-55841685:-,RBM38->RNA_binding_motif_protein_38,chr20:55966463-55984389:+	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--SERINC2	3	0	PPP1R12C	8950	chr19:55610152:-	SERINC2	30252	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0256	TRUE	0	4	0	1	0	TRUE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRD1--CTTN	2	0	BRD1	12025	chr22:50187682:-	CTTN	23266	chr11:70251371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	BRD1->bromodomain_containing_1,chr22:50166931-50221160:-,CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKBKB--INO80C	2	0	IKBKB	1904	chr8:42129723:+	INO80C	32729	chr18:33060527:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta,INO80C->INO80_complex_subunit_C,chr18:33032194-33077955:-	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM6--RHOA	2	0	RBM6	29776	chr3:50131308:+	RHOA	39376	chr3:49405981:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Pituitary=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000056
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BPGM--DGKI	2	0	BPGM	1130	chr7:134331689:+	DGKI	49419	chr7:137096953:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+,DGKI->chr7:137065783-137531838:-,diacylglycerol_kinase_iota	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYL6--C6orf136	2	0	MYL6	2462	chr12:56553406:+	C6orf136	11145	chr6:30617335:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,C6orf136->chr6:30614816-30620987:+,chromosome_6_open_reading_frame_136	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000080
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	R3HCC1L--HTRA1	56	118	R3HCC1L	3647	chr10:99923154:+	HTRA1	20613	chr10:124266207:+	ONLY_REF_SPLICE	YES	19	0	0.9	1	0.6621	1.3951	R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+,HTRA1->HtrA_serine_peptidase_1,Oncogene{Bushman},chr10:124221041-124274424:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	2.0572	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POU2F1--ETV7	23	16	POU2F1	17759	chr1:167353188:+	ETV7	47130	chr6:36341355:-	ONLY_REF_SPLICE	YES	13	2	0.75	0.95	0.2719	0.1892	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ETV7->ETS_variant_7,chr6:36322419-36356164:-	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.95	0.4611	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRR4--TMEM117	11	13	PRR4	2363	chr12:11273609:-	TMEM117	30474	chr12:44537328:+	ONLY_REF_SPLICE	YES	26	6	0.48	0.8	0.13	0.1537	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.8	0.2837	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRR4--TMEM117	11	8	PRR4	1192	chr12:11324021:-	TMEM117	31574	chr12:44605073:+	ONLY_REF_SPLICE	YES	26	6	0.42	0.76	0.13	0.0946	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.76	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRR4--TMEM117	5	12	PRR4	1192	chr12:11324021:-	TMEM117	30474	chr12:44537328:+	ONLY_REF_SPLICE	YES	26	6	0.4	0.74	0.0591	0.1419	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.74	0.201	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC003005.4--UBE3C	2	0	AC003005.4	3523	chr19:58016154:+	UBE3C	14762	chr7:156974212:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AC003005.4->chr19:57999086-58016749:+,UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADK--GTF2I	2	0	ADK	1142	chr10:75911101:+	GTF2I	22620	chr7:74103458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ADK->adenosine_kinase,chr10:75910960-76469061:+,GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD46P1--DEAF1	2	0	CD46P1	1097	chr1:207818675:+	DEAF1	25866	chr11:654051:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	CD46P1->CD46_molecule_pseudogene_1,chr1:207818579-207830755:+,DEAF1->DEAF1,_transcription_factor,chr11:644233-706715:-	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT3--NOC4L	2	0	CNOT3	1266	chr19:54641709:+	NOC4L	23005	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	CNOT3->CCR4-NOT_transcription_complex_subunit_3,chr19:54641444-54659419:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCUN1D2--TFDP1	2	0	DCUN1D2	1286	chr13:114144982:-	TFDP1	18891	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[93746],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	1	0	6	1	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR3--DOPEY2	2	0	DSCR3	1724	chr21:38639539:-	DOPEY2	23064	chr21:37571368:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,DOPEY2->Oncogene{Bushman},chr21:37529080-37666572:+,dopey_family_member_2	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGSF1--KCNQ5	2	0	IGSF1	7284	chrX:130433625:-	KCNQ5	28113	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	IGSF1->chrX:130407480-130533677:-,immunoglobulin_superfamily_member_1,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	R3HCC1L--TSPAN3	2	0	R3HCC1L	1077	chr10:99894463:+	TSPAN3	20788	chr15:77348597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+,TSPAN3->chr15:77336359-77376326:-,tetraspanin_3	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SNX5	2	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	5	0	11	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-305P22.9--HNRNPK	2	0	RP11-305P22.9	1091	chr20:61640825:+	HNRNPK	11439	chr9:86593367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RP11-305P22.9->chr20:61640735-61716423:+,HNRNPK->Oncogene{Bushman},chr9:86582998-86595569:-,heterogeneous_nuclear_ribonucleoprotein_K	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEPT7--HERPUD2	2	0	SEPT7	1339	chr7:35840880:+	HERPUD2	33988	chr7:35678082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Gastroesophageal_Junction=1},SEPT7->chr7:35840542-35944917:+,septin_7,HERPUD2->HERPUD_family_member_2,chr7:35672269-35735181:-	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF850--AGO3	2	0	ZNF850	1101	chr19:37263627:-	AGO3	25120	chr1:36469942:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF850->chr19:37205285-37263727:-,zinc_finger_protein_850,AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
SKMEL30_SKIN	PTPN12--PHTF2	10	5	PTPN12	9763	chr7:77214898:+	PHTF2	32326	chr7:77522925:+	ONLY_REF_SPLICE	YES	105	67	0.12	0.18	0.1286	0.0643	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	SKMEL30_SKIN	0.12	0.18	0.1929	TRUE	0	1	0	1	1	TRUE	ACH-000810
SKMEL30_SKIN	UTRN--STXBP5-AS1	5	3	UTRN	70061	chr6:145103259:+	STXBP5-AS1	110809	chr6:147172467:-	ONLY_REF_SPLICE	YES	45	2	0.15	0.8	0.0643	0.0386	UTRN->chr6:144606837-145174170:+,utrophin,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	SKMEL30_SKIN	0.15	0.8	0.1029	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	FUBP1--IVNS1ABP	5	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0643	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	SKMEL30_SKIN	1	1	0.0643	TRUE	1	4	0	16	0	TRUE	ACH-000810
SKMEL30_SKIN	RNF207--CEP104	5	0	RNF207	11299	chr1:6279938:+	CEP104	39769	chr1:3729339:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0643	0	RNF207->chr1:6265535-6281359:+,ring_finger_protein_207,CEP104->centrosomal_protein_104,chr1:3728645-3773778:-	SKMEL30_SKIN	1	1	0.0643	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	UTRN--STXBP5-AS1	3	6	UTRN	70061	chr6:145103259:+	STXBP5-AS1	109683	chr6:147181879:-	ONLY_REF_SPLICE	YES	45	0	0.17	1	0.0386	0.0771	UTRN->chr6:144606837-145174170:+,utrophin,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	SKMEL30_SKIN	0.17	1	0.1157	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	HIPK3--KIAA1549L	4	1	HIPK3	14963	chr11:33370833:+	KIAA1549L	38901	chr11:33620366:+	ONLY_REF_SPLICE	YES	27	34	0.16	0.13	0.0514	0.0129	HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3,KIAA1549L->KIAA1549-like,chr11:33563618-33695648:+	SKMEL30_SKIN	0.13	0.16	0.0643	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	FHOD3--GALNT1	4	0	FHOD3	3459	chr18:33952707:+	GALNT1	48552	chr18:33263355:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0514	0	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1	SKMEL30_SKIN	1	1	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	BSG--EEF1B2	2	0	BSG	2405	chr19:572701:+	EEF1B2	16370	chr2:207027213:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,EEF1B2->chr2:207024309-207027652:+,eukaryotic_translation_elongation_factor_1_beta_2	SKMEL30_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	LRRC41--UQCRH	2	0	LRRC41	5703	chr1:46763235:-	UQCRH	20426	chr1:46774773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_INVERSION:-:+:[23],LRRC41->chr1:46726868-46769280:-,leucine_rich_repeat_containing_41,UQCRH->chr1:46769303-46782448:+,ubiquinol-cytochrome_c_reductase_hinge_protein	SKMEL30_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	TBC1D23--TOMM70A	2	0	TBC1D23	1072	chr3:99979915:+	TOMM70A	28855	chr3:100105822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_INVERSION:+:-:[38180],TBC1D23->TBC1_domain_family_member_23,chr3:99979844-100044095:+,TOMM70A->chr3:100082275-100120242:-	SKMEL30_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	THRAP3--SFPQ	2	0	THRAP3	1090	chr1:36690106:+	SFPQ	33358	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	SKMEL30_SKIN	1	1	0.0257	TRUE	0	3	0	2	0	TRUE	ACH-000810
SKMEL30_SKIN	TMEM55A--FASN	2	0	TMEM55A	1421	chr8:92052872:-	FASN	30418	chr17:80038466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	TMEM55A->chr8:92006024-92053292:-,transmembrane_protein_55A,FASN->chr17:80036214-80056208:-,fatty_acid_synthase	SKMEL30_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	ZADH2--MLLT1	2	0	ZADH2	1499	chr18:72920805:-	MLLT1	19127	chr19:6227113:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2,MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1	SKMEL30_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000810
T47D_BREAST	ECD--RP11-119F19.2	43	44	ECD	2190	chr10:74927624:-	RP11-119F19.2	22778	chr10:81451812:-	ONLY_REF_SPLICE	YES	162	0	0.35	1	0.5151	0.5271	ECD->chr10:74889913-74928813:-,ecdysoneless_cell_cycle_regulator,RP11-119F19.2->chr10:81422844-81526085:-	T47D_BREAST	0.35	1	1.0422	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	TOP1MT--MAFA	45	30	TOP1MT	12572	chr8:144411520:-	MAFA	31899	chr8:144501508:-	ONLY_REF_SPLICE	YES	63	0	0.54	1	0.5391	0.3594	LOCAL_REARRANGEMENT:-:[59203],TOP1MT->chr8:144386554-144442149:-,topoisomerase_(DNA)_I,_mitochondrial,MAFA->Oncogene{Bushman},chr8:144501352-144512576:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_A	T47D_BREAST	0.54	1	0.8985	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	AMMECR1L--RP11-506M13.3	49	13	AMMECR1L	1113	chr2:128643384:-	RP11-506M13.3	17654	chr10:81429244:+	ONLY_REF_SPLICE	YES	16	3	0.79	0.95	0.587	0.1557	AMMECR1L->AMMECR1_like,chr2:128619204-128643496:-,RP11-506M13.3->chr10:81420647-81437248:+	T47D_BREAST	0.79	0.95	0.7427	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	KIAA0232--RP11-325I22.2	34	1	KIAA0232	2467	chr4:6784568:+	RP11-325I22.2	25895	chr5:1364806:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4073	0.012	KIAA0232->KIAA0232,chr4:6783102-6885897:+,RP11-325I22.2->chr5:1363697-1380182:-	T47D_BREAST	1	1	0.4193	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	VGLL4--SH3BP5	28	22	VGLL4	17693	chr3:11643307:-	SH3BP5	32312	chr3:15372073:-	ONLY_REF_SPLICE	YES	94	7	0.35	0.88	0.3354	0.2636	VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,SH3BP5->SH3_domain_binding_protein_5,chr3:15296360-15382875:-	T47D_BREAST	0.35	0.88	0.599	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	RERG--CBFB	27	17	RERG	6502	chr12:15370363:-	CBFB	19844	chr16:67100585:+	ONLY_REF_SPLICE	YES	94	77	0.32	0.36	0.3235	0.2037	RERG->RAS_like_estrogen_regulated_growth_inhibitor,chr12:15260717-15501609:-,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	T47D_BREAST	0.32	0.36	0.5272	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	VPS26A--FAM149B1	19	26	VPS26A	2919	chr10:70892803:+	FAM149B1	22402	chr10:74968377:+	ONLY_REF_SPLICE	YES	239	39	0.16	0.54	0.2276	0.3115	VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+,FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1	T47D_BREAST	0.16	0.54	0.5391	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	RP11-208N14.4--DNAJC9	17	4	RP11-208N14.4	6020	chr3:186915553:-	DNAJC9	13637	chr10:75003687:-	INCL_NON_REF_SPLICE	YES	13	329	0.62	0.06	0.2037	0.0479	RP11-208N14.4->chr3:186914878-186925417:-,DNAJC9->DnaJ_heat_shock_protein_family_(Hsp40)_member_C9,Oncogene{Bushman},chr10:74943120-75008620:-	T47D_BREAST	0.06	0.62	0.2516	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	NBPF1--CROCC	8	30	NBPF1	1225	chr1:16939833:-	CROCC	44286	chr1:17250820:+	ONLY_REF_SPLICE	YES	84	3	0.31	0.93	0.0958	0.3594	NBPF1->chr1:16888814-16940057:-,neuroblastoma_breakpoint_family_member_1,CROCC->chr1:17066768-17299474:+,ciliary_rootlet_coiled-coil,_rootletin	T47D_BREAST	0.31	0.93	0.4552	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	NBPF1--CROCC	9	17	NBPF1	1225	chr1:16939833:-	CROCC	45881	chr1:17256781:+	ONLY_REF_SPLICE	YES	84	38	0.24	0.41	0.1078	0.2037	NBPF1->chr1:16888814-16940057:-,neuroblastoma_breakpoint_family_member_1,CROCC->chr1:17066768-17299474:+,ciliary_rootlet_coiled-coil,_rootletin	T47D_BREAST	0.24	0.41	0.3115	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	LMF2--MTND2P28	13	0	LMF2	1878	chr22:50945258:-	MTND2P28	8780	chr1:565039:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1557	0	LMF2->chr22:50941376-50946135:-,lipase_maturation_factor_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	T47D_BREAST	1	1	0.1557	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	VPS26A--FAM149B1	6	21	VPS26A	2919	chr10:70892803:+	FAM149B1	22480	chr10:74968455:+	INCL_NON_REF_SPLICE	YES	239	27	0.1	0.5	0.0719	0.2516	VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+,FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1	T47D_BREAST	0.1	0.5	0.3235	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	CNNM2--RP11-208N14.4	10	3	CNNM2	2809	chr10:104679858:+	RP11-208N14.4	32107	chr3:186916490:-	ONLY_REF_SPLICE	YES	27	13	0.33	0.5	0.1198	0.0359	CNNM2->chr10:104678050-104849978:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_2,RP11-208N14.4->chr3:186914878-186925417:-	T47D_BREAST	0.33	0.5	0.1557	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	FAM149B1--RTP1	9	1	FAM149B1	19586	chr10:75003687:+	RTP1	23441	chr3:186915553:+	INCL_NON_REF_SPLICE	YES	1	8	0.91	0.56	0.1078	0.012	FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1,RTP1->chr3:186915274-186919253:+,receptor_(chemosensory)_transporter_protein_1	T47D_BREAST	0.56	0.91	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	NBPF1--CROCC	3	23	NBPF1	1225	chr1:16939833:-	CROCC	45441	chr1:17256341:+	ONLY_REF_SPLICE	YES	84	12	0.24	0.68	0.0359	0.2755	NBPF1->chr1:16888814-16940057:-,neuroblastoma_breakpoint_family_member_1,CROCC->chr1:17066768-17299474:+,ciliary_rootlet_coiled-coil,_rootletin	T47D_BREAST	0.24	0.68	0.3114	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	KIAA0232--RP11-325I22.2	7	6	KIAA0232	3551	chr4:6806333:+	RP11-325I22.2	25895	chr5:1364806:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0839	0.0719	KIAA0232->KIAA0232,chr4:6783102-6885897:+,RP11-325I22.2->chr5:1363697-1380182:-	T47D_BREAST	0.93	1	0.1558	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	NBPF1--CROCC	1	30	NBPF1	1225	chr1:16939833:-	CROCC	43150	chr1:17249158:+	ONLY_REF_SPLICE	YES	84	1	0.27	0.97	0.012	0.3594	NBPF1->chr1:16888814-16940057:-,neuroblastoma_breakpoint_family_member_1,CROCC->chr1:17066768-17299474:+,ciliary_rootlet_coiled-coil,_rootletin	T47D_BREAST	0.27	0.97	0.3714	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	NBPF1--CROCC	3	20	NBPF1	1225	chr1:16939833:-	CROCC	45719	chr1:17256619:+	ONLY_REF_SPLICE	YES	84	42	0.21	0.35	0.0359	0.2396	NBPF1->chr1:16888814-16940057:-,neuroblastoma_breakpoint_family_member_1,CROCC->chr1:17066768-17299474:+,ciliary_rootlet_coiled-coil,_rootletin	T47D_BREAST	0.21	0.35	0.2755	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	KIAA0232--CLPTM1L	5	0	KIAA0232	2467	chr4:6784568:+	CLPTM1L	23961	chr5:1344566:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0599	0	KIAA0232->KIAA0232,chr4:6783102-6885897:+,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	T47D_BREAST	1	1	0.0599	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MECOM--TTC18	3	5	MECOM	10944	chr3:168861486:-	TTC18	59519	chr10:75035356:-	ONLY_REF_SPLICE	YES	13	0	0.38	1	0.0359	0.0599	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,TTC18->chr10:75013517-75118617:-	T47D_BREAST	0.38	1	0.0958	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MECOM--TTC18	4	0	MECOM	10944	chr3:168861486:-	TTC18	63877	chr10:75016174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0479	0	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,TTC18->chr10:75013517-75118617:-	T47D_BREAST	1	1	0.0479	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	RERG--CBFB	3	1	RERG	3656	chr12:15490311:-	CBFB	19844	chr16:67100585:+	ONLY_REF_SPLICE	YES	11	77	0.27	0.05	0.0359	0.012	RERG->RAS_like_estrogen_regulated_growth_inhibitor,chr12:15260717-15501609:-,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	T47D_BREAST	0.05	0.27	0.0479	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	SYK--ROR2	3	0	SYK	4964	chr9:93607876:+	ROR2	24168	chr9:94686210:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	PROTCLUST,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,ROR2->Oncogene{Bushman},chr9:94325373-94712444:-,receptor_tyrosine_kinase_like_orphan_receptor_2	T47D_BREAST	1	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	SEMA3E--CCDC129	2	1	SEMA3E	1583	chr7:83277744:-	CCDC129	34883	chr7:31594089:+	ONLY_REF_SPLICE	YES	7	1	0.3	0.75	0.024	0.012	SEMA3E->chr7:82993222-83278326:-,semaphorin_3E,CCDC129->chr7:31553704-31698334:+,coiled-coil_domain_containing_129	T47D_BREAST	0.3	0.75	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	COPA--PHF20	2	0	COPA	1270	chr1:160312921:-	PHF20	34600	chr20:34389413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	T47D_BREAST	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	NSUN5--CSE1L	2	0	NSUN5	1437	chr7:72722428:-	CSE1L	31186	chr20:47712886:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NSUN5->NOP2/Sun_RNA_methyltransferase_family_member_5,chr7:72716514-72722864:-,CSE1L->Oncogene{Bushman},chr20:47662849-47713489:+,chromosome_segregation_1_like	T47D_BREAST	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	ZNF736--FAM120B	1	1	ZNF736	8361	chr7:63797360:+	FAM120B	32723	chr6:170704575:+	ONLY_REF_SPLICE	YES	67	43	0.03	0.04	0.012	0.012	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lymphoid=1,Lung=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	T47D_BREAST	0.03	0.04	0.024	TRUE	0	3	0	3	3	TRUE	ACH-000147
JHH2_LIVER	IQCE--EIF3B	130	76	IQCE	8546	chr7:2618160:+	EIF3B	51872	chr7:2418324:+	ONLY_REF_SPLICE	YES	53	537	0.8	0.28	1.6642	0.9729	{Klijn_CCL:Liver=1,Colo-Rectal=1},IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	JHH2_LIVER	0.28	0.8	2.6371	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	ARHGAP5--NUBPL	76	46	ARHGAP5	9216	chr14:32586493:+	NUBPL	43598	chr14:32315677:+	ONLY_REF_SPLICE	YES	193	21	0.39	0.85	0.9729	0.5889	{Klijn_CCL:Liver=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	JHH2_LIVER	0.39	0.85	1.5618	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	ARHGEF2--SMG5	36	25	ARHGEF2	28055	chr1:155921710:-	SMG5	45912	chr1:156233361:-	ONLY_REF_SPLICE	YES	147	143	0.29	0.3	0.4609	0.32	ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-,SMG5->SMG5_nonsense_mediated_mRNA_decay_factor,chr1:156219015-156252620:-	JHH2_LIVER	0.29	0.3	0.7809	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	LPP--RP11-430L16.1	31	11	LPP	8828	chr3:188059507:+	RP11-430L16.1	55201	chr3:187864354:+	ONLY_REF_SPLICE	YES	13	0	0.76	1	0.3969	0.1408	LOCAL_REARRANGEMENT:+:[6264],LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,RP11-430L16.1->chr3:187824884-187864808:+	JHH2_LIVER	0.76	1	0.5377	TRUE	0	1	0	1	1	TRUE	ACH-000577
JHH2_LIVER	PTPN1--CYP1B1	25	7	PTPN1	1237	chr20:49127127:+	CYP1B1	17466	chr2:38302532:-	ONLY_REF_SPLICE	YES	106	229	0.23	0.12	0.32	0.0896	PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1,CYP1B1->chr2:38294116-38337044:-,cytochrome_P450_family_1_subfamily_B_member_1	JHH2_LIVER	0.12	0.23	0.4096	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	IQCE--EIF3B	1	77	IQCE	10738	chr7:2621711:+	EIF3B	51872	chr7:2418324:+	ONLY_REF_SPLICE	YES	59	537	0.57	0.13	0.0128	0.9857	{Klijn_CCL:Liver=1,Colo-Rectal=1},IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	JHH2_LIVER	0.13	0.57	0.9985	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	TUBB--SERPINE1	18	0	TUBB	3372	chr6:30690359:+	SERPINE1	14122	chr7:100777024:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2304	0	TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	JHH2_LIVER	1	1	0.2304	TRUE	0	0	0	2	0	TRUE	ACH-000577
JHH2_LIVER	PTPN1--CYP1B1	16	3	PTPN1	1237	chr20:49127127:+	CYP1B1	20340	chr2:38298453:-	ONLY_REF_SPLICE	YES	106	359	0.15	0.05	0.2048	0.0384	PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1,CYP1B1->chr2:38294116-38337044:-,cytochrome_P450_family_1_subfamily_B_member_1	JHH2_LIVER	0.05	0.15	0.2432	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	IQCE--EIF3B	3	52	IQCE	8375	chr7:2617989:+	EIF3B	51872	chr7:2418324:+	ONLY_REF_SPLICE	YES	53	537	0.51	0.09	0.0384	0.6657	{Klijn_CCL:Liver=1,Colo-Rectal=1},IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	JHH2_LIVER	0.09	0.51	0.7041	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	ZFAND3--GAB2	9	2	ZFAND3	1518	chr6:37787792:+	GAB2	22323	chr11:77991947:-	ONLY_REF_SPLICE	YES	21	0	0.34	1	0.1152	0.0256	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	JHH2_LIVER	0.34	1	0.1408	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	ARHGAP5--NUBPL	4	19	ARHGAP5	8068	chr14:32563592:+	NUBPL	43598	chr14:32315677:+	ONLY_REF_SPLICE	YES	216	21	0.1	0.52	0.0512	0.2432	{Klijn_CCL:Liver=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	JHH2_LIVER	0.1	0.52	0.2944	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	KLHL20--SRGAP2	8	1	KLHL20	3700	chr1:173703425:+	SRGAP2	39669	chr1:206628224:+	ONLY_REF_SPLICE	YES	13	23	0.41	0.28	0.1024	0.0128	{Klijn_CCL:Liver=1},KLHL20->chr1:173684080-173755840:+,kelch_like_family_member_20,SRGAP2->SLIT-ROBO_Rho_GTPase_activating_protein_2,chr1:206516200-206637783:+	JHH2_LIVER	0.28	0.41	0.1152	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	PHC2--YARS	8	0	PHC2	9417	chr1:33832717:-	YARS	42366	chr1:33241692:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1024	0	PHC2->chr1:33789224-33896653:-,polyhomeotic_homolog_2,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	JHH2_LIVER	1	1	0.1024	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	ARHGAP5--NUBPL	2	22	ARHGAP5	9216	chr14:32586493:+	NUBPL	44791	chr14:32319325:+	ONLY_REF_SPLICE	YES	193	40	0.11	0.38	0.0256	0.2816	{Klijn_CCL:Liver=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	JHH2_LIVER	0.11	0.38	0.3072	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	CFB--AIF1	6	2	CFB	15453	chr6:31919381:+	AIF1	19271	chr6:31583298:+	ONLY_REF_SPLICE	YES	81	0	0.09	1	0.0768	0.0256	CFB->chr6:31895475-31919825:+,chr6:31895475-31919861:+,complement_factor_B,AIF1->allograft_inflammatory_factor_1,chr6:31582961-31584798:+	JHH2_LIVER	0.09	1	0.1024	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	ARHGAP5--NUBPL	2	9	ARHGAP5	2322	chr14:32546641:+	NUBPL	43598	chr14:32315677:+	ONLY_REF_SPLICE	YES	73	21	0.13	0.34	0.0256	0.1152	{Klijn_CCL:Liver=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	JHH2_LIVER	0.13	0.34	0.1408	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	FAM222B--PHF12	4	0	FAM222B	1283	chr17:27181968:-	PHF12	35511	chr17:27235899:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0512	0	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	JHH2_LIVER	1	1	0.0512	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	ARHGAP5--NUBPL	1	11	ARHGAP5	9216	chr14:32586493:+	NUBPL	45874	chr14:32328324:+	ONLY_REF_SPLICE	YES	193	40	0.06	0.23	0.0128	0.1408	{Klijn_CCL:Liver=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	JHH2_LIVER	0.06	0.23	0.1536	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	LSAMP--ZFAND3	3	2	LSAMP	1067	chr3:117716029:-	ZFAND3	28350	chr6:37897735:+	ONLY_REF_SPLICE	YES	0	22	1	0.19	0.0384	0.0256	LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein,ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3	JHH2_LIVER	0.19	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	SLCO3A1--RP11-184D12.1	3	1	SLCO3A1	5545	chr15:92459688:+	RP11-184D12.1	30568	chr15:36507962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0384	0.0128	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,RP11-184D12.1->chr15:36231368-36544458:-	JHH2_LIVER	1	1	0.0512	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	AL109763.2--LINC00478	3	0	AL109763.2	3701	chr21:20110242:-	LINC00478	20169	chr21:17859810:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0384	0	AL109763.2->chr21:19933583-20132321:-,LINC00478->chr21:17442842-17999716:+	JHH2_LIVER	1	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	INADL--AL139147.1	2	1	INADL	39029	chr1:62516730:+	AL139147.1	62049	chr1:67132650:-	ONLY_REF_SPLICE	YES	39	0	0.07	1	0.0256	0.0128	INADL->Oncogene{Bushman},chr1:62208149-62629592:+,AL139147.1->chr1:67131547-67142710:-	JHH2_LIVER	0.07	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	CRBN--MKLN1	2	0	CRBN	9586	chr3:3196431:-	MKLN1	35906	chr7:131147976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	CRBN->cereblon,chr3:3190676-3221394:-,MKLN1->chr7:130794855-131181395:+,muskelin_1	JHH2_LIVER	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	DNAH14--TXNL4A	2	0	DNAH14	3523	chr1:225117537:+	TXNL4A	117621	chr18:77737701:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A	JHH2_LIVER	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	DPH6--IVNS1ABP	2	0	DPH6	3364	chr15:35830475:-	IVNS1ABP	30540	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	DPH6->chr15:35509546-35838394:-,diphthamine_biosynthesis_6,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	JHH2_LIVER	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	EHMT1--GNAS	2	0	EHMT1	3610	chr9:140605482:+	GNAS	67021	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	JHH2_LIVER	1	1	0.0256	TRUE	0	0	0	2	0	TRUE	ACH-000577
JHH2_LIVER	FBN1--CEP152	2	0	FBN1	10235	chr15:48888480:-	CEP152	97694	chr15:49040807:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	LOCAL_REARRANGEMENT:-:[67079],FBN1->chr15:48700503-48938046:-,fibrillin_1,CEP152->centrosomal_protein_152,chr15:49005125-49103343:-	JHH2_LIVER	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	TRPA1--STAU2	2	0	TRPA1	27254	chr8:72936049:-	STAU2	42614	chr8:74585477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	TRPA1->chr8:72932152-72987852:-,transient_receptor_potential_cation_channel_subfamily_A_member_1,STAU2->chr8:74332604-74659943:-,staufen_double-stranded_RNA_binding_protein_2	JHH2_LIVER	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	INADL--AL139147.1	1	2	INADL	40147	chr1:62545239:+	AL139147.1	62049	chr1:67132650:-	ONLY_REF_SPLICE	YES	30	0	0.09	1	0.0128	0.0256	INADL->Oncogene{Bushman},chr1:62208149-62629592:+,AL139147.1->chr1:67131547-67142710:-	JHH2_LIVER	0.09	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	TSHZ2--RP4-753D4.2	1	2	TSHZ2	7394	chr20:51873110:+	RP4-753D4.2	21502	chr20:41599466:+	ONLY_REF_SPLICE	NO	55	0	0.05	1	0.0128	0.0256	TSHZ2->chr20:51588946-52111869:+,teashirt_zinc_finger_homeobox_2,RP4-753D4.2->chr20:41597383-41600132:+	JHH2_LIVER	0.05	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000577
RVH421_SKIN	RPL7L1--MRPL2	273	167	RPL7L1	2349	chr6:42848704:+	MRPL2	15882	chr6:43025971:-	ONLY_REF_SPLICE	YES	116	127	0.79	0.78	3.1301	1.9147	RPL7L1->chr6:42847356-42857663:+,ribosomal_protein_L7_like_1,MRPL2->chr6:43021767-43027544:-,mitochondrial_ribosomal_protein_L2	RVH421_SKIN	0.78	0.79	5.0448	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	PPWD1--NLN	64	21	PPWD1	9153	chr5:64875440:+	NLN	30839	chr5:65105342:+	ONLY_REF_SPLICE	YES	56	31	0.6	0.73	0.7338	0.2408	PPWD1->chr5:64859063-64883376:+,peptidylprolyl_isomerase_domain_and_WD_repeat_containing_1,NLN->chr5:65018023-65167553:+,neurolysin	RVH421_SKIN	0.6	0.73	0.9746	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	DOCK4--IMMP2L	58	14	DOCK4	30646	chr7:111462418:-	IMMP2L	72389	chr7:110603621:-	ONLY_REF_SPLICE	YES	8	77	0.9	0.48	0.665	0.1605	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	RVH421_SKIN	0.48	0.9	0.8255	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	IL1RAPL1--CXorf57	57	0	IL1RAPL1	7451	chrX:29686621:+	CXorf57	23940	chrX:105880990:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6535	0	IL1RAPL1->chrX:28605516-29974840:+,interleukin_1_receptor_accessory_protein_like_1,CXorf57->chrX:105855160-105922672:+,chromosome_X_open_reading_frame_57	RVH421_SKIN	1	1	0.6535	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	ARHGAP42--DLG2	40	14	ARHGAP42	1180	chr11:100558563:+	DLG2	64232	chr11:83691685:-	ONLY_REF_SPLICE	YES	55	1	0.5	0.98	0.4586	0.1605	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	RVH421_SKIN	0.5	0.98	0.6191	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	RPL7L1--MRPL2	37	12	RPL7L1	1334	chr6:42847689:+	MRPL2	15882	chr6:43025971:-	ONLY_REF_SPLICE	YES	6	127	0.89	0.28	0.4242	0.1376	RPL7L1->chr6:42847356-42857663:+,ribosomal_protein_L7_like_1,MRPL2->chr6:43021767-43027544:-,mitochondrial_ribosomal_protein_L2	RVH421_SKIN	0.28	0.89	0.5618	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	ATXN2--RAD9B	20	9	ATXN2	1893	chr12:112036588:-	RAD9B	40626	chr12:110944384:+	ONLY_REF_SPLICE	YES	8	2	0.78	0.94	0.2293	0.1032	ATXN2->ataxin_2,chr12:111890018-112037480:-,RAD9B->RAD9_checkpoint_clamp_component_B,chr12:110939460-110969891:+	RVH421_SKIN	0.78	0.94	0.3325	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	EEA1--ALDH2	13	6	EEA1	15519	chr12:93219942:-	ALDH2	46428	chr12:112223071:+	ONLY_REF_SPLICE	YES	65	39	0.23	0.33	0.1491	0.0688	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,ALDH2->Oncogene{Bushman},aldehyde_dehydrogenase_2_family_(mitochondrial),chr12:112204691-112247782:+	RVH421_SKIN	0.23	0.33	0.2179	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	EEA1--ALDH2	9	12	EEA1	15519	chr12:93219942:-	ALDH2	45287	chr12:112220962:+	ONLY_REF_SPLICE	YES	65	34	0.24	0.38	0.1032	0.1376	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,ALDH2->Oncogene{Bushman},aldehyde_dehydrogenase_2_family_(mitochondrial),chr12:112204691-112247782:+	RVH421_SKIN	0.24	0.38	0.2408	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	HIBCH--TMCC3	11	3	HIBCH	2532	chr2:191184442:-	TMCC3	36237	chr12:94976314:-	ONLY_REF_SPLICE	YES	11	24	0.56	0.37	0.1261	0.0344	HIBCH->3-hydroxyisobutyryl-CoA_hydrolase,chr2:191054461-191208919:-,TMCC3->chr12:94960900-95044338:-,transmembrane_and_coiled-coil_domain_family_3	RVH421_SKIN	0.37	0.56	0.1605	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	RAB30--PPFIA1	9	6	RAB30	1233	chr11:82782733:-	PPFIA1	47418	chr11:70200407:+	ONLY_REF_SPLICE	YES	14	118	0.52	0.11	0.1032	0.0688	RAB30->RAB30,_member_RAS_oncogene_family,chr11:82684175-82782965:-,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	RVH421_SKIN	0.11	0.52	0.172	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	OLA1--HMGB1P27	8	6	OLA1	4128	chr2:175094036:-	HMGB1P27	20329	chr2:192039022:+	INCL_NON_REF_SPLICE	YES	207	0	0.06	1	0.0917	0.0688	OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-,HMGB1P27->chr2:192038959-192039561:+,high_mobility_group_box_1_pseudogene_27	RVH421_SKIN	0.06	1	0.1605	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	ALG13--PABPC5-AS1	7	1	ALG13	7822	chrX:110932425:+	PABPC5-AS1	35595	chrX:90673870:-	ONLY_REF_SPLICE	YES	18	1	0.31	0.89	0.0803	0.0115	ALG13->ALG13,_UDP-N-acetylglucosaminyltransferase_subunit,chrX:110909043-111003877:+,PABPC5-AS1->PABPC5_antisense_RNA_1,chrX:90669877-90689998:-	RVH421_SKIN	0.31	0.89	0.0918	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	ACTR6--UHRF1BP1L	6	1	ACTR6	7485	chr12:100602667:+	UHRF1BP1L	25995	chr12:100489615:-	ONLY_REF_SPLICE	YES	42	24	0.14	0.23	0.0688	0.0115	LOCAL_INVERSION:+:-:[56274],ACTR6->ARP6_actin-related_protein_6_homolog,chr12:100592900-100635643:+,UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-	RVH421_SKIN	0.14	0.23	0.0803	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	RFTN2--ANKS1B	5	3	RFTN2	9920	chr2:198460715:-	ANKS1B	46812	chr12:99447087:-	ONLY_REF_SPLICE	YES	18	0	0.31	1	0.0573	0.0344	RFTN2->chr2:198432948-198540769:-,raftlin_family_member_2,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	RVH421_SKIN	0.31	1	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	FAM120C--GYG2	5	0	FAM120C	1782	chrX:54208933:-	GYG2	38287	chrX:2793851:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0573	0	FAM120C->chrX:54094757-54209714:-,family_with_sequence_similarity_120C,GYG2->chrX:2746829-2800859:+,glycogenin_2	RVH421_SKIN	1	1	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	PHKA2--CSF2RA	5	0	PHKA2	6203	chrX:18966862:-	CSF2RA	51453	chrX:1419384:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0573	0	PHKA2->chrX:18910418-19002716:-,phosphorylase_kinase,_alpha_2_(liver),CSF2RA->chrX:1387693-1429274:+,chrY:1337693-1379274:+,colony_stimulating_factor_2_receptor_alpha_subunit	RVH421_SKIN	1	1	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	NLGN1--NAALADL2	4	2	NLGN1	8770	chr3:173322881:+	NAALADL2	42973	chr3:174814580:+	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0459	0.0229	NLGN1->chr3:173114074-174004434:+,neuroligin_1,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	RVH421_SKIN	0.26	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	AC074363.1--B3GALT1	1	11	AC074363.1	2265	chr2:168346787:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0115	0.1261	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	RVH421_SKIN	1	1	0.1376	TRUE	0	4	2	6	4	TRUE	ACH-000614
RVH421_SKIN	AC074363.1--B3GALT1	2	4	AC074363.1	2265	chr2:168346787:+	B3GALT1	7585	chr2:168725321:+	ONLY_REF_SPLICE	YES	0	5	1	0.55	0.0229	0.0459	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	RVH421_SKIN	0.55	1	0.0688	TRUE	0	0	0	2	0	TRUE	ACH-000614
RVH421_SKIN	ALG13--PABPC5-AS1	2	0	ALG13	4473	chrX:110928331:+	PABPC5-AS1	35595	chrX:90673870:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	ALG13->ALG13,_UDP-N-acetylglucosaminyltransferase_subunit,chrX:110909043-111003877:+,PABPC5-AS1->PABPC5_antisense_RNA_1,chrX:90669877-90689998:-	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	C17orf76-AS1--PICALM	2	0	C17orf76-AS1	1593	chr17:16342728:+	PICALM	29540	chr11:85695016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	C17orf76-AS1->chr17:16342136-16381992:+,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	CCDC14--KPNA1	2	0	CCDC14	1574	chr3:123679991:-	KPNA1	26668	chr3:122186276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx&tcga_normals:1/3694=0.03%,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14,KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	CPB2-AS1--ITGB3BP	2	0	CPB2-AS1	1160	chr13:46627100:+	ITGB3BP	23856	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	CPB2-AS1--ZC3H13	2	0	CPB2-AS1	1160	chr13:46627100:+	ZC3H13	23051	chr13:46563232:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LOCAL_INVERSION:+:-:[47],CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	2	0	TRUE	ACH-000614
RVH421_SKIN	MIR181A1HG--C1orf27	2	0	MIR181A1HG	1204	chr1:198906355:-	C1orf27	24279	chr1:186386676:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	MIR181A1HG->MIR181A1_host_gene,chr1:198776622-198906558:-,C1orf27->chr1:186344890-186390510:+,chromosome_1_open_reading_frame_27	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	STEAP1B--RP11-390P2.4	2	0	STEAP1B	2501	chr7:22539733:-	RP11-390P2.4	14849	chr6:139017734:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-,RP11-390P2.4->chr6:139013685-139018425:+	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	TNRC6B--TSNARE1	2	0	TNRC6B	6221	chr22:40574144:+	TSNARE1	50046	chr8:143436124:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	TNRC6B->chr22:40440821-40731812:+,trinucleotide_repeat_containing_6B,TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	USP53--PDS5A	2	0	USP53	1287	chr4:120134028:+	PDS5A	35685	chr4:39929784:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	USP53->chr4:120133742-120216672:+,ubiquitin_specific_peptidase_53,PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	ARHGAP42--DLG2	1	2	ARHGAP42	1180	chr11:100558563:+	DLG2	65369	chr11:83676511:-	ONLY_REF_SPLICE	YES	55	6	0.05	0.33	0.0115	0.0229	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	RVH421_SKIN	0.05	0.33	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000614
SCABER_URINARY_TRACT	LRP11--RP11-287D1.3	32	9	LRP11	7724	chr6:150157221:-	RP11-287D1.3	49840	chr2:74443343:-	ONLY_REF_SPLICE	YES	55	0	0.43	1	0.3227	0.0907	LRP11->LDL_receptor_related_protein_11,chr6:150139934-150186199:-,RP11-287D1.3->chr2:74438731-74590504:-	SCABER_URINARY_TRACT	0.43	1	0.4134	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	CAD--KHK	20	4	CAD	11172	chr2:27455562:+	KHK	31326	chr2:27320371:+	ONLY_REF_SPLICE	YES	41	3	0.37	0.89	0.2017	0.0403	CAD->carbamoyl-phosphate_synthetase_2,_aspartate_transcarbamylase,_and_dihydroorotase,chr2:27440258-27466811:+,KHK->chr2:27309615-27323640:+,ketohexokinase	SCABER_URINARY_TRACT	0.37	0.89	0.242	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	ROCK1--WHAMMP3	12	4	ROCK1	24846	chr18:18550309:-	WHAMMP3	51499	chr15:23191920:-	ONLY_REF_SPLICE	YES	66	7	0.2	0.7	0.121	0.0403	ROCK1->Rho_associated_coiled-coil_containing_protein_kinase_1,chr18:18526867-18691812:-,WHAMMP3->WAS_protein_homolog_associated_with_actin,_golgi_membranes_and_microtubules_pseudogene_3,chr15:23187728-23208737:-	SCABER_URINARY_TRACT	0.2	0.7	0.1613	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	LRP11--RP11-287D1.3	7	1	LRP11	7724	chr6:150157221:-	RP11-287D1.3	49926	chr2:74443257:-	INCL_NON_REF_SPLICE	YES	55	4	0.13	0.67	0.0706	0.0101	LRP11->LDL_receptor_related_protein_11,chr6:150139934-150186199:-,RP11-287D1.3->chr2:74438731-74590504:-	SCABER_URINARY_TRACT	0.13	0.67	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	ZNF407--SYNJ1	4	1	ZNF407	7927	chr18:72353078:+	SYNJ1	40423	chr21:34051120:-	ONLY_REF_SPLICE	YES	4	3	0.56	0.62	0.0403	0.0101	ZNF407->chr18:72265106-72777627:+,zinc_finger_protein_407,SYNJ1->chr21:34001069-34100359:-,synaptojanin_1	SCABER_URINARY_TRACT	0.56	0.62	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	F3--SPG7	3	0	F3	1264	chr1:95007093:-	SPG7	29909	chr16:89611056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Head-Neck=2,Breast=1},F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SCABER_URINARY_TRACT	1	1	0.0302	TRUE	0	0	0	8	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	HEPHL1--RBM15	3	0	HEPHL1	4426	chr11:93797676:+	RBM15	31610	chr1:110888930:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	HEPHL1->chr11:93754527-93846917:+,hephaestin_like_1,RBM15->Oncogene{Bushman},RNA_binding_motif_protein_15,chr1:110881128-110889299:+	SCABER_URINARY_TRACT	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	RTN4--VRK2	3	0	RTN4	6560	chr2:55276881:-	VRK2	31549	chr2:58275962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2	SCABER_URINARY_TRACT	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	hsa-mir-490--DGKI	3	0	hsa-mir-490	1500	chr7:136866355:-	DGKI	49420	chr7:137237314:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	hsa-mir-490->chr7:136370306-136866854:-,DGKI->chr7:137065783-137531838:-,diacylglycerol_kinase_iota	SCABER_URINARY_TRACT	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	LRP11--RP11-287D1.3	2	1	LRP11	7724	chr6:150157221:-	RP11-287D1.3	50974	chr2:74441602:-	ONLY_REF_SPLICE	YES	55	1	0.05	0.75	0.0202	0.0101	LRP11->LDL_receptor_related_protein_11,chr6:150139934-150186199:-,RP11-287D1.3->chr2:74438731-74590504:-	SCABER_URINARY_TRACT	0.05	0.75	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	ARPC4--BIRC5	2	0	ARPC4	5664	chr3:9843440:+	BIRC5	17094	chr17:76219546:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	ARPC4->actin_related_protein_2/3_complex_subunit_4,chr3:9834179-9849410:+,BIRC5->baculoviral_IAP_repeat_containing_5,chr17:76210267-76221717:+	SCABER_URINARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	SCABER_URINARY_TRACT	1	1	0.0202	TRUE	0	0	0	10	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	FER--GPBP1	2	0	FER	1179	chr5:108083701:+	GPBP1	47058	chr5:56526925:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	FER->FER_tyrosine_kinase,chr5:108083523-108532542:+,GPBP1->GC-rich_promoter_binding_protein_1,chr5:56469775-56560506:+	SCABER_URINARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	HNRNPA2B1--IVNS1ABP	2	0	HNRNPA2B1	1958	chr7:26240192:-	IVNS1ABP	21060	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	SCABER_URINARY_TRACT	1	1	0.0202	TRUE	0	0	0	4	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	PLXNA1--INF2	2	0	PLXNA1	3377	chr3:126710409:+	INF2	33208	chr14:105167694:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	PLXNA1->chr3:126707437-126756235:+,plexin_A1,INF2->chr14:105155943-105185942:+,inverted_formin,_FH2_and_WH2_domain_containing	SCABER_URINARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	TRAF3--PPAP2A	2	0	TRAF3	4544	chr14:103296809:+	PPAP2A	33251	chr5:54721867:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+,PPAP2A->chr5:54720682-54830878:-	SCABER_URINARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000839
KM12_LARGE_INTESTINE	TPM3--NTRK1	233	129	TPM3	12356	chr1:154142876:-	NTRK1	34364	chr1:156844363:+	ONLY_REF_SPLICE	YES	419	8	0.46	0.98	2.3592	1.3062	Cosmic{samples=629,mutations=32,papers=32},chimerdb_pubmed{Thyroid carcinoma},{Klijn_CCL:Colo-Rectal=1},TPM3->Oncogene{Bushman},chr1:154127784-154167124:-,tropomyosin_3,NTRK1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:156785432-156851642:+,neurotrophic_receptor_tyrosine_kinase_1	KM12_LARGE_INTESTINE	0.46	0.98	3.6654	TRUE	0	1	0	1	1	TRUE	ACH-000969
KM12_LARGE_INTESTINE	TPM3--NTRK1	125	147	TPM3	13451	chr1:154141781:-	NTRK1	34364	chr1:156844363:+	ONLY_REF_SPLICE	YES	440	8	0.38	0.97	1.2657	1.4884	Cosmic{samples=629,mutations=32,papers=32},chimerdb_pubmed{Thyroid carcinoma},{Klijn_CCL:Colo-Rectal=1},TPM3->Oncogene{Bushman},chr1:154127784-154167124:-,tropomyosin_3,NTRK1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:156785432-156851642:+,neurotrophic_receptor_tyrosine_kinase_1	KM12_LARGE_INTESTINE	0.38	0.97	2.7541	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	RNF125--RPRD1A	45	20	RNF125	4261	chr18:29622236:+	RPRD1A	27397	chr18:33573263:-	ONLY_REF_SPLICE	YES	7	75	0.9	0.46	0.4556	0.2025	RNF125->chr18:29598335-29653176:+,ring_finger_protein_125,_E3_ubiquitin_protein_ligase,RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A	KM12_LARGE_INTESTINE	0.46	0.9	0.6581	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	TPM3--NTRK1	2	95	TPM3	12356	chr1:154142876:-	NTRK1	34699	chr1:156844698:+	ONLY_REF_SPLICE	YES	419	11	0.19	0.9	0.0203	0.9619	Cosmic{samples=629,mutations=32,papers=32},chimerdb_pubmed{Thyroid carcinoma},{Klijn_CCL:Colo-Rectal=1},TPM3->Oncogene{Bushman},chr1:154127784-154167124:-,tropomyosin_3,NTRK1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:156785432-156851642:+,neurotrophic_receptor_tyrosine_kinase_1	KM12_LARGE_INTESTINE	0.19	0.9	0.9822	TRUE	0	1	0	1	1	TRUE	ACH-000969
KM12_LARGE_INTESTINE	EMC2--EIF3E	4	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0405	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	KM12_LARGE_INTESTINE	1	1	0.0405	TRUE	0	0	0	12	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	G3BP1--CTD-2410N18.5	3	0	G3BP1	1992	chr5:151151597:+	CTD-2410N18.5	27988	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTD-2410N18.5->chr5:133502861-133561762:-	KM12_LARGE_INTESTINE	1	1	0.0304	TRUE	0	0	0	4	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	RP11-573D15.9--RP11-773H22.2	3	0	RP11-573D15.9	1588	chr3:186501381:-	RP11-773H22.2	6412	chr18:12912854:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	RP11-573D15.9->chr3:186499569-186501968:-,RP11-773H22.2->chr18:12912843-12913905:+	KM12_LARGE_INTESTINE	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	ARHGEF38--PPA2	2	0	ARHGEF38	1342	chr4:106474118:+	PPA2	32366	chr4:106377902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=2;pct=0.02%;dist=Small_Intestine_-_Terminal_Ileum=1,Pancreas=1},LOCAL_INVERSION:+:-:[78539],ARHGEF38->Rho_guanine_nucleotide_exchange_factor_38,chr4:106473777-106629250:+,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	4	1	2	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	ARHGEF4--HS6ST1	2	0	ARHGEF4	1077	chr2:131594565:+	HS6ST1	28405	chr2:129026444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+,HS6ST1->chr2:128994290-129076151:-,heparan_sulfate_6-O-sulfotransferase_1	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	ELF1--SLC25A15	2	0	ELF1	1603	chr13:41634974:-	SLC25A15	19622	chr13:41373193:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,SLC25A15->chr13:41363548-41384247:+,solute_carrier_family_25_member_15	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	KIF18B--RER1	2	0	KIF18B	1087	chr17:43024996:-	RER1	18915	chr1:2327223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	KIF18B->chr17:43002077-43025082:-,kinesin_family_member_18B,RER1->chr1:2323267-2336883:+,retention_in_endoplasmic_reticulum_sorting_receptor_1	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	METTL5--PPP2R2A	2	0	METTL5	4799	chr2:170676071:-	PPP2R2A	21240	chr8:26211984:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	METTL5->chr2:170666591-170681441:-,methyltransferase_like_5,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	MIPEPP3--ZDHHC20	2	0	MIPEPP3	2501	chr13:21875757:+	ZDHHC20	8997	chr13:21999817:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_INVERSION:+:-:[69751],MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ZDHHC20->chr13:21950263-22033509:-,zinc_finger_DHHC-type_containing_20	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	NDUFA7--GPKOW	2	0	NDUFA7	1540	chr19:8385741:-	GPKOW	17410	chrX:48970876:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NDUFA7->NADH:ubiquinone_oxidoreductase_subunit_A7,chr19:8373167-8386263:-,chr19:8373490-8386280:-,GPKOW->G-patch_domain_and_KOW_motifs,chrX:48970334-48980151:-	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	SETD5--CTNNB1	2	0	SETD5	1363	chr3:9439661:+	CTNNB1	46952	chr3:41274832:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	SETD5->SET_domain_containing_5,chr3:9439299-9520924:+,CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
NCIH1734_LUNG	FAM60A--DPF3	202	16	FAM60A	2035	chr12:31478958:-	DPF3	25883	chr14:73238601:-	ONLY_REF_SPLICE	YES	40	0	0.84	1	1.7624	0.1396	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	NCIH1734_LUNG	0.84	1	1.902	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	C2CD5--PKP2	97	30	C2CD5	7576	chr12:22676360:-	PKP2	50908	chr12:32949232:-	ONLY_REF_SPLICE	YES	42	5	0.75	0.96	0.8463	0.2617	C2CD5->C2_calcium-dependent_domain_containing_5,chr12:22601517-22697480:-,PKP2->chr12:32943679-33049774:-,plakophilin_2	NCIH1734_LUNG	0.75	0.96	1.108	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	IGSF9B--DPF3	83	17	IGSF9B	1295	chr11:133826586:-	DPF3	36463	chr14:73238601:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7241	0.1483	IGSF9B->chr11:133778459-133826880:-,immunoglobulin_superfamily_member_9B,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	NCIH1734_LUNG	1	1	0.8724	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MRC2--MAP3K3	78	20	MRC2	1520	chr17:60705281:+	MAP3K3	26051	chr17:61710041:+	ONLY_REF_SPLICE	YES	107	4	0.48	0.96	0.6805	0.1745	{Klijn_CCL:Lung=1},MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2,MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3	NCIH1734_LUNG	0.48	0.96	0.855	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MED13--MARCH10	43	26	MED13	9824	chr17:60106902:-	MARCH10	43835	chr17:60879113:-	ONLY_REF_SPLICE	YES	164	0	0.3	1	0.3752	0.2268	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,MARCH10->chr17:60778675-60885705:-,membrane_associated_ring-CH-type_finger_10	NCIH1734_LUNG	0.3	1	0.602	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	UVRAG--POLD3	38	6	UVRAG	15547	chr11:75694557:+	POLD3	39822	chr11:74329582:+	ONLY_REF_SPLICE	YES	12	60	0.79	0.42	0.3315	0.0523	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,POLD3->chr11:74204896-74380162:+,polymerase_(DNA)_delta_3,_accessory_subunit	NCIH1734_LUNG	0.42	0.79	0.3838	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	NDRG3--RBL1	31	15	NDRG3	9858	chr20:35309219:-	RBL1	33345	chr20:35675593:-	ONLY_REF_SPLICE	YES	57	32	0.45	0.59	0.2705	0.1309	NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-,RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1	NCIH1734_LUNG	0.45	0.59	0.4014	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	FAM60A--DPF3	26	19	FAM60A	4052	chr12:31476878:-	DPF3	25883	chr14:73238601:-	ONLY_REF_SPLICE	YES	80	0	0.36	1	0.2268	0.1658	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	NCIH1734_LUNG	0.36	1	0.3926	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	SMPDL3A--TNIK	25	10	SMPDL3A	3581	chr6:123118113:+	TNIK	16915	chr3:170946010:-	ONLY_REF_SPLICE	YES	31	7	0.53	0.83	0.2181	0.0872	{Klijn_CCL:Lung=1},SMPDL3A->chr6:123110315-123130865:+,sphingomyelin_phosphodiesterase_acid_like_3A,TNIK->TRAF2_and_NCK_interacting_kinase,chr3:170779128-171178197:-	NCIH1734_LUNG	0.53	0.83	0.3053	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	TEKT4P2--ASXL3	24	4	TEKT4P2	2129	chr21:9966322:-	ASXL3	22387	chr18:31241580:+	ONLY_REF_SPLICE	YES	5	0	0.85	1	0.2094	0.0349	TEKT4P2->chr21:9907190-9968585:-,tektin_4_pseudogene_2,ASXL3->additional_sex_combs_like_3,_transcriptional_regulator,chr18:31158579-31331156:+	NCIH1734_LUNG	0.85	1	0.2443	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	RP11-129M6.1--RP11-662J14.1	17	2	RP11-129M6.1	3159	chr14:41443595:+	RP11-662J14.1	7647	chr14:40855456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1483	0.0174	RP11-129M6.1->chr14:41424103-41445082:+,RP11-662J14.1->chr14:40855456-40855998:+	NCIH1734_LUNG	1	1	0.1657	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MED13--MARCH10	14	8	MED13	9824	chr17:60106902:-	MARCH10	44942	chr17:60865960:-	ONLY_REF_SPLICE	YES	164	0	0.12	1	0.1221	0.0698	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,MARCH10->chr17:60778675-60885705:-,membrane_associated_ring-CH-type_finger_10	NCIH1734_LUNG	0.12	1	0.1919	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	TPPP--EYS	12	3	TPPP	2433	chr5:677865:-	EYS	35454	chr6:65707596:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1047	0.0262	TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein,EYS->chr6:64429876-66417118:-,eyes_shut_homolog_(Drosophila)	NCIH1734_LUNG	1	1	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	PDE4D--CWC27	11	2	PDE4D	19661	chr5:59064073:-	CWC27	75134	chr5:64267530:+	ONLY_REF_SPLICE	YES	0	63	1	0.17	0.096	0.0174	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+	NCIH1734_LUNG	0.17	1	0.1134	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	RP11-386G11.10--P4HB	10	0	RP11-386G11.10	1422	chr12:49521986:+	P4HB	16899	chr17:79801485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0872	0	RP11-386G11.10->chr12:49521565-49541652:+,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	NCIH1734_LUNG	1	1	0.0872	TRUE	0	1	0	2	1	TRUE	ACH-000675
NCIH1734_LUNG	CTD-3006G17.2--PASK	8	3	CTD-3006G17.2	4550	chr14:28125649:-	PASK	15224	chr2:242082489:-	ONLY_REF_SPLICE	YES	11	21	0.5	0.34	0.0698	0.0262	CTD-3006G17.2->chr14:27727923-28314492:-,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	NCIH1734_LUNG	0.34	0.5	0.096	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	FAM60A--DPF3	2	18	FAM60A	2833	chr12:31478160:-	DPF3	25883	chr14:73238601:-	ONLY_REF_SPLICE	YES	72	0	0.22	1	0.0174	0.157	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	NCIH1734_LUNG	0.22	1	0.1744	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	SPECC1--RAI1	6	1	SPECC1	10433	chr17:20000111:+	RAI1	44376	chr17:17627342:+	ONLY_REF_SPLICE	YES	0	3	1	0.7	0.0523	0.0087	SPECC1->Oncogene{Bushman},chr17:19912657-20222339:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1,RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1	NCIH1734_LUNG	0.7	1	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	BPIFB5P--BPIFB3	4	4	BPIFB5P	7350	chr20:31913660:+	BPIFB3	15134	chr20:31647184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0.0349	HGNC_GENEFAM,BPIFB5P->BPI_fold_containing_family_B_member_5,_pseudogene,chr20:31904675-31917775:+,BPIFB3->BPI_fold_containing_family_B_member_3,chr20:31643230-31661434:+	NCIH1734_LUNG	1	1	0.0698	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MAP2K5--EIF2AK3	5	0	MAP2K5	28818	chr15:68040939:+	EIF2AK3	51257	chr2:88874964:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	PROTCLUST,MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5,EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3	NCIH1734_LUNG	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	KPNA4--FIG4	4	3	KPNA4	16621	chr3:160219872:-	FIG4	38393	chr6:110081453:+	INCL_NON_REF_SPLICE	YES	126	19	0.05	0.27	0.0349	0.0262	KPNA4->chr3:160212783-160283376:-,karyopherin_subunit_alpha_4,FIG4->FIG4_phosphoinositide_5-phosphatase,chr6:110012499-110146631:+	NCIH1734_LUNG	0.05	0.27	0.0611	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	SLCO2A1--RP11-298O21.3	4	1	SLCO2A1	5904	chr3:133692507:-	RP11-298O21.3	25289	chr3:167584675:-	ONLY_REF_SPLICE	YES	120	0	0.04	1	0.0349	0.0087	SLCO2A1->chr3:133651540-133771028:-,solute_carrier_organic_anion_transporter_family_member_2A1,RP11-298O21.3->chr3:167584288-167588765:-	NCIH1734_LUNG	0.04	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	C2CD5--PKP2	2	8	C2CD5	7576	chr12:22676360:-	PKP2	52242	chr12:32945665:-	ONLY_REF_SPLICE	YES	42	14	0.19	0.42	0.0174	0.0698	C2CD5->C2_calcium-dependent_domain_containing_5,chr12:22601517-22697480:-,PKP2->chr12:32943679-33049774:-,plakophilin_2	NCIH1734_LUNG	0.19	0.42	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	GRK4--PDE6B	4	0	GRK4	1263	chr4:2965597:+	PDE6B	34680	chr4:649729:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+,PDE6B->chr4:619373-664571:+,phosphodiesterase_6B	NCIH1734_LUNG	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	NBEA--STXBP5-AS1	3	4	NBEA	1828	chr13:35517251:+	STXBP5-AS1	88526	chr6:147181879:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0262	0.0349	NBEA->chr13:35516424-36247159:+,neurobeachin,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	NCIH1734_LUNG	0.88	1	0.0611	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	CWC27--PDE4D	3	3	CWC27	16634	chr5:64181373:+	PDE4D	49605	chr5:58511794:-	ONLY_REF_SPLICE	YES	61	16	0.09	0.27	0.0262	0.0262	CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+,PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D	NCIH1734_LUNG	0.09	0.27	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	GRK4--PDE6B	3	3	GRK4	1436	chr4:2965770:+	PDE6B	34605	chr4:649654:+	INCL_NON_REF_SPLICE	NO	17	0	0.26	1	0.0262	0.0262	GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+,PDE6B->chr4:619373-664571:+,phosphodiesterase_6B	NCIH1734_LUNG	0.26	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	NBEA--STXBP5-AS1	3	3	NBEA	1828	chr13:35517251:+	STXBP5-AS1	89652	chr6:147172467:-	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0262	0.0262	NBEA->chr13:35516424-36247159:+,neurobeachin,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	NCIH1734_LUNG	0.86	0.86	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	C3orf58--CLVS2	2	4	C3orf58	2192	chr3:143691831:+	CLVS2	18995	chr6:123369767:+	ONLY_REF_SPLICE	NO	24	1	0.2	0.86	0.0174	0.0349	{Klijn_CCL:Lung=1},C3orf58->chr3:143690640-143767561:+,chromosome_3_open_reading_frame_58,CLVS2->chr6:123317116-123394072:+,clavesin_2	NCIH1734_LUNG	0.2	0.86	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	C3orf58--CLVS2	2	4	C3orf58	2192	chr3:143691831:+	CLVS2	17820	chr6:123332130:+	ONLY_REF_SPLICE	YES	24	1	0.2	0.86	0.0174	0.0349	{Klijn_CCL:Lung=1},C3orf58->chr3:143690640-143767561:+,chromosome_3_open_reading_frame_58,CLVS2->chr6:123317116-123394072:+,clavesin_2	NCIH1734_LUNG	0.2	0.86	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	FAM60A--DPF3	2	4	FAM60A	2035	chr12:31478958:-	DPF3	27044	chr14:73220079:-	ONLY_REF_SPLICE	YES	40	40	0.13	0.13	0.0174	0.0349	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	NCIH1734_LUNG	0.13	0.13	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	OGG1--BRPF1	2	4	OGG1	8149	chr3:9800970:+	BRPF1	29282	chr3:9787257:+	ONLY_REF_SPLICE	YES	22	18	0.21	0.25	0.0174	0.0349	LOCAL_REARRANGEMENT:+:[1926],OGG1->8-oxoguanine_DNA_glycosylase,chr3:9791628-9829903:+,BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+	NCIH1734_LUNG	0.21	0.25	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	CTD-3006G17.2--PASK	2	3	CTD-3006G17.2	4655	chr14:28125544:-	PASK	15224	chr2:242082489:-	ONLY_REF_SPLICE	YES	13	21	0.28	0.19	0.0174	0.0262	CTD-3006G17.2->chr14:27727923-28314492:-,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	NCIH1734_LUNG	0.19	0.28	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	OGG1--BRPF1	2	2	OGG1	4333	chr3:9796569:+	BRPF1	29282	chr3:9787257:+	ONLY_REF_SPLICE	YES	56	18	0.07	0.18	0.0174	0.0174	LOCAL_REARRANGEMENT:+:[1926],OGG1->8-oxoguanine_DNA_glycosylase,chr3:9791628-9829903:+,BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+	NCIH1734_LUNG	0.07	0.18	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	IGSF9B--DPF3	1	5	IGSF9B	1295	chr11:133826586:-	DPF3	37624	chr14:73220079:-	ONLY_REF_SPLICE	NO	0	40	1	0.13	0.0087	0.0436	IGSF9B->chr11:133778459-133826880:-,immunoglobulin_superfamily_member_9B,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	NCIH1734_LUNG	0.13	1	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	23575	chr4:98184732:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0174	0.0087	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH1734_LUNG	0.75	1	0.0261	TRUE	0	4	0	2	4	TRUE	ACH-000675
NCIH1734_LUNG	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0.0087	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH1734_LUNG	1	1	0.0261	TRUE	0	6	0	7	6	TRUE	ACH-000675
NCIH1734_LUNG	ARHGEF33--GALM	2	0	ARHGEF33	19976	chr2:39193286:+	GALM	35788	chr2:38956698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	ARHGEF33->Rho_guanine_nucleotide_exchange_factor_33,chr2:39117021-39202590:+,GALM->chr2:38893052-38968379:+,galactose_mutarotase_(aldose_1-epimerase)	NCIH1734_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	C2CD5--PKP2	1	4	C2CD5	6530	chr12:22677406:-	PKP2	50908	chr12:32949232:-	ONLY_REF_SPLICE	YES	42	5	0.11	0.5	0.0087	0.0349	C2CD5->C2_calcium-dependent_domain_containing_5,chr12:22601517-22697480:-,PKP2->chr12:32943679-33049774:-,plakophilin_2	NCIH1734_LUNG	0.11	0.5	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	CAPZA2--RPL41	2	0	CAPZA2	3371	chr7:116502704:+	RPL41	25576	chr12:56510559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,RPL41->chr12:56510370-56511727:+,ribosomal_protein_L41	NCIH1734_LUNG	1	1	0.0174	TRUE	0	1	0	2	0	TRUE	ACH-000675
NCIH1734_LUNG	CNOT10--MLXIP	2	0	CNOT10	1338	chr3:32726974:+	MLXIP	31870	chr12:122611803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	CNOT10->CCR4-NOT_transcription_complex_subunit_10,chr3:32726637-32815367:+,MLXIP->MLX_interacting_protein,chr12:122516628-122631894:+	NCIH1734_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MAP2K5--EIF2AK3	2	0	MAP2K5	28818	chr15:68040939:+	EIF2AK3	53038	chr2:88870559:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	PROTCLUST,MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5,EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3	NCIH1734_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	NBEA--STXBP5-AS1	1	4	NBEA	1828	chr13:35517251:+	STXBP5-AS1	82736	chr6:147232801:-	ONLY_REF_SPLICE	YES	1	2	0.83	0.71	0.0087	0.0349	NBEA->chr13:35516424-36247159:+,neurobeachin,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	NCIH1734_LUNG	0.71	0.83	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	OGG1--BRPF1	1	4	OGG1	5679	chr3:9798500:+	BRPF1	29282	chr3:9787257:+	ONLY_REF_SPLICE	YES	48	18	0.09	0.22	0.0087	0.0349	LOCAL_REARRANGEMENT:+:[1926],OGG1->8-oxoguanine_DNA_glycosylase,chr3:9791628-9829903:+,BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+	NCIH1734_LUNG	0.09	0.22	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	RP11-762I7.5--PAH	2	0	RP11-762I7.5	8630	chr12:56197413:-	PAH	44752	chr12:103232996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	RP11-762I7.5->chr12:56151059-56221330:-,PAH->chr12:103230663-103352188:-,phenylalanine_hydroxylase	NCIH1734_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	SAR1A--ANXA11	2	0	SAR1A	1111	chr10:71930169:-	ANXA11	24757	chr10:81932625:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A,ANXA11->annexin_A11,chr10:81910645-81965328:-	NCIH1734_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	SUPT3H--C9orf3	2	0	SUPT3H	2744	chr6:45332938:-	C9orf3	58935	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NCIH1734_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	PRUNE2--RP11-767I20.1	1	2	PRUNE2	8127	chr9:79438548:-	RP11-767I20.1	45355	chr12:59106134:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0087	0.0174	PRUNE2->chr9:79226292-79521003:-,prune_homolog_2_(Drosophila),RP11-767I20.1->chr12:58959743-59175529:-	NCIH1734_LUNG	0.5	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	CTD-3006G17.2--PASK	1	1	CTD-3006G17.2	1106	chr14:28314387:-	PASK	15224	chr2:242082489:-	ONLY_REF_SPLICE	NO	5	21	0.29	0.09	0.0087	0.0087	CTD-3006G17.2->chr14:27727923-28314492:-,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	NCIH1734_LUNG	0.09	0.29	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	23575	chr4:98184732:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0087	0.0087	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH1734_LUNG	0.67	1	0.0174	TRUE	0	3	0	2	3	TRUE	ACH-000675
NCIH1734_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0087	0.0087	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH1734_LUNG	0.67	1	0.0174	TRUE	0	6	0	6	6	TRUE	ACH-000675
JHOS4_OVARY	ATF4--RP11-480I12.5	707	284	ATF4	3295	chr22:39917994:+	RP11-480I12.5	12428	chr1:202822327:-	INCL_NON_REF_SPLICE	YES	742	2	0.57	1	8.0872	3.2486	ATF4->Oncogene{Bushman},activating_transcription_factor_4,chr22:39915700-39918691:+,RP11-480I12.5->chr1:202820956-202830748:-	JHOS4_OVARY	0.57	1	11.3358	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	RNF213--SLC26A11	466	217	RNF213	2242	chr17:78237577:+	SLC26A11	91119	chr17:78218995:+	ONLY_REF_SPLICE	YES	50	80	0.93	0.9	5.3305	2.4822	LOCAL_REARRANGEMENT:+:[7366],RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,SLC26A11->Oncogene{Bushman},chr17:78193498-78227299:+,solute_carrier_family_26_member_11	JHOS4_OVARY	0.9	0.93	7.8127	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	ESRRA--VEGFB	245	36	ESRRA	1165	chr11:64073208:+	VEGFB	12560	chr11:64004659:+	ONLY_REF_SPLICE	YES	9	184	0.97	0.6	2.8025	0.4118	LOCAL_REARRANGEMENT:+:[66785],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,VEGFB->chr11:64002010-64006259:+,vascular_endothelial_growth_factor_B	JHOS4_OVARY	0.6	0.97	3.2143	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	EXOC6B--C12orf54	73	22	EXOC6B	1244	chr2:73052927:-	C12orf54	37958	chr12:48879961:+	ONLY_REF_SPLICE	YES	6	0	0.94	1	0.835	0.2517	EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B,C12orf54->chr12:48876286-48890295:+,chromosome_12_open_reading_frame_54	JHOS4_OVARY	0.94	1	1.0867	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	NDUFS4--PHF3	64	18	NDUFS4	1128	chr5:52856590:+	PHF3	15620	chr6:64389901:+	ONLY_REF_SPLICE	YES	137	19	0.37	0.81	0.7321	0.2059	NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+,PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+	JHOS4_OVARY	0.37	0.81	0.938	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	C16orf62--CCP110	52	25	C16orf62	3955	chr16:19580913:+	CCP110	58583	chr16:19556119:+	ONLY_REF_SPLICE	YES	65	8	0.54	0.91	0.5948	0.286	LOCAL_REARRANGEMENT:+:[1832],C16orf62->chr16:19566562-19718115:+,chromosome_16_open_reading_frame_62,CCP110->centriolar_coiled-coil_protein_110kDa,chr16:19535133-19564730:+	JHOS4_OVARY	0.54	0.91	0.8808	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	KLF5--RP11-1055B8.7	30	20	KLF5	6989	chr13:73638021:+	RP11-1055B8.7	31005	chr17:79422293:+	ONLY_REF_SPLICE	YES	89	1	0.36	0.98	0.3432	0.2288	KLF5->Kruppel-like_factor_5_(intestinal),Oncogene{Bushman},chr13:73629114-73651676:+,RP11-1055B8.7->chr17:79373540-79433357:+	JHOS4_OVARY	0.36	0.98	0.572	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	GOLPH3--DNAI2	34	2	GOLPH3	1541	chr5:32173916:-	DNAI2	16915	chr17:72295857:+	ONLY_REF_SPLICE	YES	41	0	0.47	1	0.3889	0.0229	GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3,DNAI2->chr17:72270386-72311023:+,dynein_axonemal_intermediate_chain_2	JHOS4_OVARY	0.47	1	0.4118	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	DDX17--AP000345.1	30	11	DDX17	2460	chr22:38901956:-	AP000345.1	23736	chr22:23825313:-	ONLY_REF_SPLICE	YES	173	0	0.19	1	0.3432	0.1258	DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-,AP000345.1->chr22:23804273-23829167:-	JHOS4_OVARY	0.19	1	0.469	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	RNF213--SLC26A11	1	121	RNF213	2242	chr17:78237577:+	SLC26A11	92077	chr17:78219953:+	ONLY_REF_SPLICE	YES	50	75	0.71	0.62	0.0114	1.3841	LOCAL_REARRANGEMENT:+:[7366],RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,SLC26A11->Oncogene{Bushman},chr17:78193498-78227299:+,solute_carrier_family_26_member_11	JHOS4_OVARY	0.62	0.71	1.3955	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	ATAD2B--PFN4	23	19	ATAD2B	1560	chr2:24149425:-	PFN4	49905	chr2:24344170:-	ONLY_REF_SPLICE	YES	12	3	0.78	0.93	0.2631	0.2173	ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,PFN4->chr2:24338241-24346347:-,profilin_family_member_4	JHOS4_OVARY	0.78	0.93	0.4804	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	ESRRA--VEGFB	9	39	ESRRA	1877	chr11:64073920:+	VEGFB	12560	chr11:64004659:+	ONLY_REF_SPLICE	YES	39	184	0.55	0.21	0.1029	0.4461	LOCAL_REARRANGEMENT:+:[66785],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,VEGFB->chr11:64002010-64006259:+,vascular_endothelial_growth_factor_B	JHOS4_OVARY	0.21	0.55	0.549	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	OXSR1--XCR1	16	8	OXSR1	15129	chr3:38284269:+	XCR1	27968	chr3:46063769:-	ONLY_REF_SPLICE	YES	42	1	0.36	0.96	0.183	0.0915	OXSR1->chr3:38206580-38296979:+,oxidative_stress_responsive_1,XCR1->X-C_motif_chemokine_receptor_1,chr3:46058516-46069234:-	JHOS4_OVARY	0.36	0.96	0.2745	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	GOLPH3--DNAI2	17	0	GOLPH3	1541	chr5:32173916:-	DNAI2	18055	chr17:72297185:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1945	0	GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3,DNAI2->chr17:72270386-72311023:+,dynein_axonemal_intermediate_chain_2	JHOS4_OVARY	1	1	0.1945	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	PML--GALNTL6	13	5	PML	2742	chr15:74290817:+	GALNTL6	43828	chr4:173852312:+	ONLY_REF_SPLICE	YES	59	0	0.23	1	0.1487	0.0572	PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia,GALNTL6->chr4:172733405-173962710:+,polypeptide_N-acetylgalactosaminyltransferase-like_6	JHOS4_OVARY	0.23	1	0.2059	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	FBXW11--LRRC6	10	8	FBXW11	1416	chr5:171433462:-	LRRC6	42942	chr8:133584728:-	ONLY_REF_SPLICE	YES	121	14	0.13	0.56	0.1144	0.0915	FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6	JHOS4_OVARY	0.13	0.56	0.2059	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	EXOC6B--C12orf54	7	18	EXOC6B	1244	chr2:73052927:-	C12orf54	38468	chr12:48880471:+	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.0801	0.2059	EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B,C12orf54->chr12:48876286-48890295:+,chromosome_12_open_reading_frame_54	JHOS4_OVARY	0.81	1	0.286	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	PLLP--ARL2BP	11	2	PLLP	3559	chr16:57295809:-	ARL2BP	14513	chr16:57286078:+	ONLY_REF_SPLICE	YES	86	33	0.13	0.28	0.1258	0.0229	LOCAL_INVERSION:-:+:[2488],PLLP->chr16:57290004-57318599:-,plasmolipin,ARL2BP->ADP_ribosylation_factor_like_GTPase_2_binding_protein,chr16:57279010-57287516:+	JHOS4_OVARY	0.13	0.28	0.1487	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	PHF3--RP11-98I9.4	9	4	PHF3	3273	chr6:64356700:+	RP11-98I9.4	30461	chr6:99873100:+	INCL_NON_REF_SPLICE	YES	21	4	0.38	0.76	0.1029	0.0458	PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,RP11-98I9.4->chr6:99872798-99879249:+	JHOS4_OVARY	0.38	0.76	0.1487	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	OXSR1--XCR1	8	3	OXSR1	15129	chr3:38284269:+	XCR1	28267	chr3:46063470:-	ONLY_REF_SPLICE	YES	42	4	0.21	0.73	0.0915	0.0343	OXSR1->chr3:38206580-38296979:+,oxidative_stress_responsive_1,XCR1->X-C_motif_chemokine_receptor_1,chr3:46058516-46069234:-	JHOS4_OVARY	0.21	0.73	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	DDX17--AP000345.1	7	4	DDX17	2460	chr22:38901956:-	AP000345.1	26372	chr22:23816125:-	ONLY_REF_SPLICE	YES	173	10	0.06	0.52	0.0801	0.0458	DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-,AP000345.1->chr22:23804273-23829167:-	JHOS4_OVARY	0.06	0.52	0.1259	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	ESRRA--VEGFB	2	14	ESRRA	1165	chr11:64073208:+	VEGFB	12894	chr11:64004993:+	ONLY_REF_SPLICE	YES	9	307	0.64	0.05	0.0229	0.1601	LOCAL_REARRANGEMENT:+:[66785],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,VEGFB->chr11:64002010-64006259:+,vascular_endothelial_growth_factor_B	JHOS4_OVARY	0.05	0.64	0.183	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	ATAD2B--PFN4	3	6	ATAD2B	1560	chr2:24149425:-	PFN4	51043	chr2:24342552:-	ONLY_REF_SPLICE	YES	12	5	0.43	0.64	0.0343	0.0686	ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,PFN4->chr2:24338241-24346347:-,profilin_family_member_4	JHOS4_OVARY	0.43	0.64	0.1029	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	FBXW11--LRRC6	2	9	FBXW11	3708	chr5:171423894:-	LRRC6	42942	chr8:133584728:-	ONLY_REF_SPLICE	YES	131	14	0.08	0.44	0.0229	0.1029	FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6	JHOS4_OVARY	0.08	0.44	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	TTK--CTD-2034I4.2	3	3	TTK	9448	chr6:80724303:+	CTD-2034I4.2	29689	chr15:81980751:+	ONLY_REF_SPLICE	YES	16	0	0.27	1	0.0343	0.0343	TTK->TTK_protein_kinase,chr6:80713604-80752244:+,CTD-2034I4.2->chr15:81846344-81989121:+	JHOS4_OVARY	0.27	1	0.0686	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	AC003005.2--MLLT1	3	1	AC003005.2	1438	chr19:57989454:+	MLLT1	11139	chr19:6227113:-	ONLY_REF_SPLICE	YES	0	38	1	0.1	0.0343	0.0114	AC003005.2->chr19:57989017-57994364:+,MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1	JHOS4_OVARY	0.1	1	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	PHF3--RP11-98I9.4	3	1	PHF3	1331	chr6:64346055:+	RP11-98I9.4	30461	chr6:99873100:+	INCL_NON_REF_SPLICE	YES	12	4	0.25	0.5	0.0343	0.0114	PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,RP11-98I9.4->chr6:99872798-99879249:+	JHOS4_OVARY	0.25	0.5	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	MTAP--RP11-78F17.1	3	0	MTAP	9899	chr9:21854869:+	RP11-78F17.1	26884	chr18:1133844:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-78F17.1->chr18:976590-1174824:+	JHOS4_OVARY	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	MTAP--RP11-78F17.1	3	0	MTAP	9899	chr9:21854869:+	RP11-78F17.1	29083	chr18:1159180:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-78F17.1->chr18:976590-1174824:+	JHOS4_OVARY	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	PHF3--RP11-98I9.4	3	0	PHF3	3273	chr6:64356700:+	RP11-98I9.4	32136	chr6:99878589:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,RP11-98I9.4->chr6:99872798-99879249:+	JHOS4_OVARY	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	SLC7A5--ACTG1	3	0	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	JHOS4_OVARY	1	1	0.0343	TRUE	0	0	0	11	0	TRUE	ACH-000584
JHOS4_OVARY	OXSR1--XCR1	2	3	OXSR1	14093	chr3:38278452:+	XCR1	28267	chr3:46063470:-	ONLY_REF_SPLICE	YES	30	4	0.14	0.56	0.0229	0.0343	OXSR1->chr3:38206580-38296979:+,oxidative_stress_responsive_1,XCR1->X-C_motif_chemokine_receptor_1,chr3:46058516-46069234:-	JHOS4_OVARY	0.14	0.56	0.0572	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	GOLPH3--DNAI2	2	2	GOLPH3	1605	chr5:32173852:-	DNAI2	16915	chr17:72295857:+	ONLY_REF_SPLICE	YES	64	0	0.06	1	0.0229	0.0229	GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3,DNAI2->chr17:72270386-72311023:+,dynein_axonemal_intermediate_chain_2	JHOS4_OVARY	0.06	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	CBS--U2AF1	2	0	CBS	7451	chr21:44488619:-	U2AF1	35068	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LOCAL_REARRANGEMENT:-:[16013],CBS->chr21:44473301-44497053:-,cystathionine-beta-synthase,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	JHOS4_OVARY	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	NUDT16--DNAJC13	2	0	NUDT16	1645	chr3:131101159:+	DNAJC13	33933	chr3:132199213:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	NUDT16->chr3:131100515-131107674:+,nudix_hydrolase_16,DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+	JHOS4_OVARY	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	OSGIN2--RIPK2	2	0	OSGIN2	4804	chr8:90926974:+	RIPK2	16043	chr8:90775057:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],OSGIN2->chr8:90914087-90940116:+,oxidative_stress_induced_growth_inhibitor_family_member_2,RIPK2->chr8:90769975-90803291:+,receptor_interacting_serine/threonine_kinase_2	JHOS4_OVARY	1	1	0.0229	TRUE	0	1	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	RP11-1379J22.5--UBE2D2	2	0	RP11-1379J22.5	1720	chr5:179085482:+	UBE2D2	10384	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RP11-1379J22.5->chr5:179084763-179091433:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	JHOS4_OVARY	1	1	0.0229	TRUE	0	5	0	5	2	TRUE	ACH-000584
JHOS4_OVARY	KLHL3--AC004540.5	1	1	KLHL3	4411	chr5:137045439:-	AC004540.5	42153	chr7:26533415:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0114	0.0114	KLHL3->chr5:136953189-137071779:-,kelch_like_family_member_3,AC004540.5->chr7:26438213-26538594:+	JHOS4_OVARY	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000584
CAL62_THYROID	LTBP2--BATF	57	48	LTBP2	9782	chr14:75016566:-	BATF	38245	chr14:75991427:+	ONLY_REF_SPLICE	YES	95	0	0.53	1	0.6224	0.5241	LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+	CAL62_THYROID	0.53	1	1.1465	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	LTBP2--BATF	28	37	LTBP2	8679	chr14:75017767:-	BATF	38245	chr14:75991427:+	ONLY_REF_SPLICE	YES	121	0	0.35	1	0.3058	0.404	LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+	CAL62_THYROID	0.35	1	0.7098	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	ZNRF3--RP11-343K8.3	12	5	ZNRF3	6765	chr22:29440878:+	RP11-343K8.3	21724	chr17:55999805:+	INCL_NON_REF_SPLICE	YES	17	0	0.5	1	0.131	0.0546	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,RP11-343K8.3->chr17:55989694-55999942:+	CAL62_THYROID	0.5	1	0.1856	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	CAMSAP2--DIO1	9	13	CAMSAP2	2669	chr1:200730226:+	DIO1	27602	chr1:54359987:+	ONLY_REF_SPLICE	YES	31	0	0.42	1	0.0983	0.142	CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,DIO1->chr1:54356912-54376759:+,deiodinase,_iodothyronine_type_I	CAL62_THYROID	0.42	1	0.2403	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	FNIP1--AC034228.7	9	7	FNIP1	3450	chr5:131066597:-	AC034228.7	38899	chr5:131154556:-	ONLY_REF_SPLICE	YES	55	0	0.23	1	0.0983	0.0764	LOCAL_REARRANGEMENT:-:[10106],FNIP1->Oncogene{Bushman},chr5:130977407-131132710:-,folliculin_interacting_protein_1,AC034228.7->chr5:131142816-131281391:-	CAL62_THYROID	0.23	1	0.1747	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	VEZF1--ZNRF3	5	5	VEZF1	1181	chr17:56065440:-	ZNRF3	22075	chr22:29442704:+	ONLY_REF_SPLICE	YES	69	16	0.13	0.38	0.0546	0.0546	VEZF1->chr17:56048910-56065620:-,vascular_endothelial_zinc_finger_1,ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3	CAL62_THYROID	0.13	0.38	0.1092	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	ASAP2--KLF11	4	2	ASAP2	21276	chr2:9525487:+	KLF11	37421	chr2:10186277:+	ONLY_REF_SPLICE	YES	86	8	0.07	0.43	0.0437	0.0218	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,KLF11->Kruppel-like_factor_11,chr2:10182976-10194963:+	CAL62_THYROID	0.07	0.43	0.0655	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	LPAR3--MCOLN2	4	1	LPAR3	2973	chr1:85331068:-	MCOLN2	20100	chr1:85403765:-	ONLY_REF_SPLICE	YES	0	17	1	0.23	0.0437	0.0109	LOCAL_REARRANGEMENT:-:[32372],LPAR3->chr1:85277285-85358896:-,lysophosphatidic_acid_receptor_3,MCOLN2->chr1:85391268-85462796:-,mucolipin_2	CAL62_THYROID	0.23	1	0.0546	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	FNIP1--AC034228.7	3	4	FNIP1	2315	chr5:131080257:-	AC034228.7	38899	chr5:131154556:-	ONLY_REF_SPLICE	YES	67	0	0.09	1	0.0328	0.0437	LOCAL_REARRANGEMENT:-:[10106],FNIP1->Oncogene{Bushman},chr5:130977407-131132710:-,folliculin_interacting_protein_1,AC034228.7->chr5:131142816-131281391:-	CAL62_THYROID	0.09	1	0.0765	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	RCC1--MRPL3	4	0	RCC1	2175	chr1:28834672:+	MRPL3	27527	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0437	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	CAL62_THYROID	1	1	0.0437	TRUE	0	0	0	6	0	TRUE	ACH-000174
CAL62_THYROID	CAMSAP2--DIO1	2	3	CAMSAP2	2669	chr1:200730226:+	DIO1	30046	chr1:54370339:+	ONLY_REF_SPLICE	YES	31	2	0.14	0.71	0.0218	0.0328	CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,DIO1->chr1:54356912-54376759:+,deiodinase,_iodothyronine_type_I	CAL62_THYROID	0.14	0.71	0.0546	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	RBBP8--CABLES1	2	2	RBBP8	17551	chr18:20562356:+	CABLES1	39457	chr18:20768802:+	ONLY_REF_SPLICE	YES	88	12	0.04	0.25	0.0218	0.0218	RBBP8->Oncogene{Bushman},chr18:20378224-20606451:+,retinoblastoma_binding_protein_8,CABLES1->Cdk5_and_Abl_enzyme_substrate_1,chr18:20714528-20840431:+	CAL62_THYROID	0.04	0.25	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	ACSF3--ABCC1	2	0	ACSF3	2292	chr16:89160404:+	ABCC1	44487	chr16:16162013:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+,ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	C17orf76-AS1--UBAP2	2	0	C17orf76-AS1	1593	chr17:16342728:+	UBAP2	31037	chr9:33948585:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	C17orf76-AS1->chr17:16342136-16381992:+,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	2	0	TRUE	ACH-000174
CAL62_THYROID	C17orf76-AS1--UBAP2	2	0	C17orf76-AS1	1593	chr17:16342728:+	UBAP2	37935	chr9:33933626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	C17orf76-AS1->chr17:16342136-16381992:+,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	EIF3H--MED30	2	0	EIF3H	3765	chr8:117767905:-	MED30	26513	chr8:118552122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	IVD--TIMM50	2	0	IVD	9727	chr15:40708561:+	TIMM50	25482	chr19:39976184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase,TIMM50->chr19:39971052-39984422:+,translocase_of_inner_mitochondrial_membrane_50	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	KRTCAP3--PHF14	2	0	KRTCAP3	2167	chr2:27666399:+	PHF14	31629	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	KRTCAP3->chr2:27665233-27669348:+,keratinocyte_associated_protein_3,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	MAGI3--RSBN1	2	0	MAGI3	10603	chr1:114157280:+	RSBN1	38435	chr1:114320430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	LOCAL_INVERSION:+:-:[75909],MAGI3->chr1:113933371-114228545:+,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_3,RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	PCMTD1--TRPC1	2	0	PCMTD1	7395	chr8:52758221:-	TRPC1	24223	chr3:142467100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,TRPC1->chr3:142442916-142526730:+,transient_receptor_potential_cation_channel_subfamily_C_member_1	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	RAB7A--TFG	2	0	RAB7A	1238	chr3:128445202:+	TFG	19001	chr3:100455420:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	RP13-578N3.3--GAB1	2	0	RP13-578N3.3	2178	chr4:144660270:+	GAB1	29439	chr4:144387256:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	RP13-578N3.3->chr4:144621410-144786225:+,GAB1->GRB2_associated_binding_protein_1,Oncogene{Bushman},chr4:144257915-144395721:+	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	LPAR3--MCOLN2	1	1	LPAR3	2973	chr1:85331068:-	MCOLN2	18950	chr1:85405385:-	ONLY_REF_SPLICE	YES	0	18	1	0.1	0.0109	0.0109	LOCAL_REARRANGEMENT:-:[32372],LPAR3->chr1:85277285-85358896:-,lysophosphatidic_acid_receptor_3,MCOLN2->chr1:85391268-85462796:-,mucolipin_2	CAL62_THYROID	0.1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
KPNSI9S_AUTONOMIC_GANGLIA	COL5A2--AC079613.1	53	22	COL5A2	38216	chr2:189909905:-	AC079613.1	55069	chr2:189468484:-	ONLY_REF_SPLICE	YES	425	0	0.15	1	0.6651	0.2761	COL5A2->chr2:189896622-190044605:-,collagen_type_V_alpha_2,AC079613.1->chr2:189463518-189704171:-	KPNSI9S_AUTONOMIC_GANGLIA	0.15	1	0.9412	TRUE	0	0	0	1	0	TRUE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	RP4-756H11.3--TPST1	8	0	RP4-756H11.3	1089	chr7:66119613:+	TPST1	14233	chr7:65751498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1004	0	RP4-756H11.3->chr7:66119525-66134842:+,TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.1004	TRUE	0	0	0	1	0	TRUE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	AP003900.6--RP11-435B5.4	7	0	AP003900.6	1122	chr21:11169841:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0878	0	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.0878	TRUE	1	3	0	6	3	TRUE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	HIVEP3--CDH7	2	0	HIVEP3	9521	chr1:42166587:-	CDH7	33448	chr18:63429883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3,CDH7->cadherin_7,chr18:63417488-63548638:+	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	PPM1G--COX8A	2	0	PPM1G	2455	chr2:27609956:-	COX8A	12539	chr11:63743697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	PPM1G->chr2:27604061-27632554:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1G,COX8A->chr11:63742079-63744015:+,cytochrome_c_oxidase_subunit_8A	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000446
JHESOAD1_OESOPHAGUS	EIF3CL--RP11-57A19.4	65	31	EIF3CL	4096	chr16:28411192:-	RP11-57A19.4	17421	chr16:28671123:-	ONLY_REF_SPLICE	YES	360	0	0.21	1	0.7897	0.3766	EIF3CL->chr16:28390900-28415200:-,eukaryotic_translation_initiation_factor_3_subunit_C-like,RP11-57A19.4->chr16:28671017-28752102:-	JHESOAD1_OESOPHAGUS	0.21	1	1.1663	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	PLEKHF1--DPY19L3	40	1	PLEKHF1	1450	chr19:30156412:+	DPY19L3	29263	chr19:32968428:+	ONLY_REF_SPLICE	YES	0	57	1	0.42	0.486	0.0121	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans)	JHESOAD1_OESOPHAGUS	0.42	1	0.4981	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	PLEKHF1--DPY19L3	35	1	PLEKHF1	1450	chr19:30156412:+	DPY19L3	25521	chr19:32955634:+	ONLY_REF_SPLICE	YES	0	32	1	0.53	0.4252	0.0121	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans)	JHESOAD1_OESOPHAGUS	0.53	1	0.4373	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	IQGAP1--ZNF710	29	20	IQGAP1	36161	chr15:91038067:+	ZNF710	46199	chr15:90610342:+	ONLY_REF_SPLICE	YES	317	1	0.13	0.98	0.3523	0.243	IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,ZNF710->chr15:90544624-90625438:+,zinc_finger_protein_710	JHESOAD1_OESOPHAGUS	0.13	0.98	0.5953	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	ERN1--PCTP	10	16	ERN1	6569	chr17:62157022:-	PCTP	34326	chr17:53844696:+	ONLY_REF_SPLICE	YES	165	284	0.14	0.08	0.1215	0.1944	ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,PCTP->chr17:53828340-53920191:+,phosphatidylcholine_transfer_protein	JHESOAD1_OESOPHAGUS	0.08	0.14	0.3159	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	CEP89--CTC-523E23.8	10	7	CEP89	21768	chr19:33390763:-	CTC-523E23.8	29496	chr19:35414743:-	ONLY_REF_SPLICE	YES	69	0	0.2	1	0.1215	0.085	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,CTC-523E23.8->chr19:35414203-35417716:-	JHESOAD1_OESOPHAGUS	0.2	1	0.2065	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	AP000525.9--LA16c-60G3.6	5	7	AP000525.9	5082	chr22:16186811:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	249	0	0.05	1	0.0607	0.085	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JHESOAD1_OESOPHAGUS	0.05	1	0.1457	TRUE	0	3	0	6	3	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	TMEM123--BIRC2	6	0	TMEM123	5695	chr11:102319543:-	BIRC2	22451	chr11:102248227:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0729	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	JHESOAD1_OESOPHAGUS	1	1	0.0729	TRUE	1	3	0	8	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	LTBP4--SHKBP1	3	11	LTBP4	25066	chr19:41131914:+	SHKBP1	35835	chr19:41088257:+	ONLY_REF_SPLICE	YES	43	209	0.25	0.06	0.0364	0.1336	LOCAL_REARRANGEMENT:+:[1484],LTBP4->chr19:41098789-41135725:+,latent_transforming_growth_factor_beta_binding_protein_4,SHKBP1->SH3KBP1_binding_protein_1,chr19:41082757-41097305:+	JHESOAD1_OESOPHAGUS	0.06	0.25	0.17	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	PLEKHF1--DPY19L3	3	5	PLEKHF1	1740	chr19:30156702:+	DPY19L3	29263	chr19:32968428:+	ONLY_REF_SPLICE	YES	24	57	0.25	0.12	0.0364	0.0607	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans)	JHESOAD1_OESOPHAGUS	0.12	0.25	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	C17orf76-AS1--ITGB3BP	4	0	C17orf76-AS1	1593	chr17:16342728:+	ITGB3BP	24528	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	C17orf76-AS1->chr17:16342136-16381992:+,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	JHESOAD1_OESOPHAGUS	1	1	0.0486	TRUE	0	0	0	4	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	ERN1--KRT36	2	6	ERN1	24108	chr17:62122220:-	KRT36	34206	chr17:39645958:-	ONLY_REF_SPLICE	YES	151	24	0.05	0.25	0.0243	0.0729	ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,KRT36->chr17:39642388-39648798:-,keratin_36	JHESOAD1_OESOPHAGUS	0.05	0.25	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	PLEKHF1--DPY19L3	3	1	PLEKHF1	1450	chr19:30156412:+	DPY19L3	27835	chr19:32959637:+	ONLY_REF_SPLICE	YES	0	41	1	0.09	0.0364	0.0121	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans)	JHESOAD1_OESOPHAGUS	0.09	1	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	C17orf76-AS1--SEPT9	3	0	C17orf76-AS1	1593	chr17:16342728:+	SEPT9	45890	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	C17orf76-AS1->chr17:16342136-16381992:+,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	JHESOAD1_OESOPHAGUS	1	1	0.0364	TRUE	0	3	0	6	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	C2orf61--CALM2	3	0	C2orf61	7327	chr2:47335527:-	CALM2	22283	chr2:47397903:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:-:[4704],C2orf61->chr2:47272677-47382517:-,chromosome_2_open_reading_frame_61,CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-	JHESOAD1_OESOPHAGUS	1	1	0.0364	TRUE	0	1	0	4	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	PLEKHF1--DPY19L3	1	6	PLEKHF1	3047	chr19:30158087:+	DPY19L3	25521	chr19:32955634:+	ONLY_REF_SPLICE	YES	31	32	0.18	0.18	0.0121	0.0729	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans)	JHESOAD1_OESOPHAGUS	0.18	0.18	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-166P13.3--SCPEP1	2	1	RP11-166P13.3	1185	chr17:55162201:-	SCPEP1	7430	chr17:55058443:+	ONLY_REF_SPLICE	YES	6	35	0.33	0.08	0.0243	0.0121	LOCAL_INVERSION:-:+:[71530],RP11-166P13.3->chr17:55155659-55162385:-,SCPEP1->chr17:55055466-55084129:+,serine_carboxypeptidase_1	JHESOAD1_OESOPHAGUS	0.08	0.33	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	ATAD1--ADK	2	0	ATAD1	3968	chr10:89574195:-	ADK	26859	chr10:76153899:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},ATAD1->ATPase_family,_AAA_domain_containing_1,chr10:89511269-89601100:-,ADK->adenosine_kinase,chr10:75910960-76469061:+	JHESOAD1_OESOPHAGUS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	ERVMER61-1--MED14	2	0	ERVMER61-1	1256	chr1:187610613:+	MED14	31261	chrX:40523741:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ERVMER61-1->chr1:187610358-187612992:+,endogenous_retrovirus_group_MER61_member_1,MED14->chrX:40507558-40595110:-,mediator_complex_subunit_14	JHESOAD1_OESOPHAGUS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	NBAS--EGFR	2	0	NBAS	9359	chr2:15674667:-	EGFR	68056	chr7:55209979:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor	JHESOAD1_OESOPHAGUS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000216
CAL54_KIDNEY	ANXA4--NUMB	272	68	ANXA4	7567	chr2:70015273:+	NUMB	43247	chr14:73763993:-	ONLY_REF_SPLICE	YES	2264	57	0.13	0.86	2.3546	0.5886	{Klijn_CCL:Kidney=1},ANXA4->annexin_A4,chr2:69871557-70053596:+,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	CAL54_KIDNEY	0.13	0.86	2.9432	TRUE	0	0	0	1	0	TRUE	ACH-000457
CAL54_KIDNEY	ANXA4--NUMB	105	13	ANXA4	6479	chr2:70008706:+	NUMB	43247	chr14:73763993:-	ONLY_REF_SPLICE	YES	560	57	0.17	0.67	0.9089	0.1125	{Klijn_CCL:Kidney=1},ANXA4->annexin_A4,chr2:69871557-70053596:+,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	CAL54_KIDNEY	0.17	0.67	1.0214	TRUE	0	0	0	1	0	TRUE	ACH-000457
CAL54_KIDNEY	MSH5--PRRC2A	72	15	MSH5	5044	chr6:31712358:+	PRRC2A	38193	chr6:31604510:+	ONLY_REF_SPLICE	YES	25	116	0.78	0.43	0.6233	0.1298	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A	CAL54_KIDNEY	0.43	0.78	0.7531	TRUE	0	0	0	1	0	TRUE	ACH-000457
CAL54_KIDNEY	SMKR1--ADAP1	6	0	SMKR1	1349	chr7:129142668:+	ADAP1	9103	chr7:975141:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0519	0	SMKR1->chr7:129142320-129152773:+,small_lysine-rich_protein_1,ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-	CAL54_KIDNEY	1	1	0.0519	TRUE	0	0	0	1	0	TRUE	ACH-000457
CAL54_KIDNEY	MSH5--PRRC2A	2	15	MSH5	5782	chr6:31713096:+	PRRC2A	38193	chr6:31604510:+	ONLY_REF_SPLICE	YES	30	116	0.36	0.13	0.0173	0.1298	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A	CAL54_KIDNEY	0.13	0.36	0.1471	TRUE	0	0	0	1	0	TRUE	ACH-000457
SW1783_CENTRAL_NERVOUS_SYSTEM	AARS2--PKP3	270	122	AARS2	4028	chr6:44278036:-	PKP3	24021	chr11:403078:+	ONLY_REF_SPLICE	YES	17	2	0.96	0.99	3.3469	1.5123	AARS2->alanyl-tRNA_synthetase_2,_mitochondrial,chr6:44267391-44281063:-,PKP3->chr11:392614-404908:+,plakophilin_3	SW1783_CENTRAL_NERVOUS_SYSTEM	0.96	0.99	4.8592	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	CD63--TGFBI	67	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8305	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.8305	TRUE	0	0	0	14	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	EVC2--EDNRA	16	7	EVC2	10279	chr4:5667242:-	EDNRA	33512	chr4:148406764:+	ONLY_REF_SPLICE	YES	2	1	0.92	0.96	0.1983	0.0868	EVC2->EvC_ciliary_complex_subunit_2,chr4:5544499-5711275:-,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	SW1783_CENTRAL_NERVOUS_SYSTEM	0.92	0.96	0.2851	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	KDM4C--EQTN	4	2	KDM4C	12172	chr9:6893232:+	EQTN	44341	chr9:27296736:-	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0496	0.0248	KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,EQTN->chr9:27284656-27297137:-,equatorin	SW1783_CENTRAL_NERVOUS_SYSTEM	0.26	1	0.0744	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	SUPT3H--TCTE1	2	6	SUPT3H	2744	chr6:45332938:-	TCTE1	23206	chr6:44255655:-	ONLY_REF_SPLICE	YES	10	0	0.44	1	0.0248	0.0744	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,TCTE1->chr6:44246480-44265458:-,t-complex-associated-testis-expressed_1	SW1783_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.0992	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	EVC2--EDNRA	3	1	EVC2	10279	chr4:5667242:-	EDNRA	35002	chr4:148441003:+	ONLY_REF_SPLICE	YES	2	5	0.67	0.44	0.0372	0.0124	EVC2->EvC_ciliary_complex_subunit_2,chr4:5544499-5711275:-,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	SW1783_CENTRAL_NERVOUS_SYSTEM	0.44	0.67	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	KDR--KIAA1211	2	1	KDR	16183	chr4:55963829:-	KIAA1211	31928	chr4:57045450:+	ONLY_REF_SPLICE	YES	22	0	0.12	1	0.0248	0.0124	KDR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:55944644-55991756:-,kinase_insert_domain_receptor,KIAA1211->KIAA1211,chr4:57036361-57194791:+	SW1783_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	7	0	19	1	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	CDK5RAP1--CIRBP	2	0	CDK5RAP1	1134	chr20:31989234:-	CIRBP	28831	chr19:1270927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NUCLCLUST,CDK5RAP1->CDK5_regulatory_subunit_associated_protein_1,chr20:31946645-31989367:-,CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	COL5A2--RHOA	2	0	COL5A2	1372	chr2:190044234:-	RHOA	53878	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	COL5A2->chr2:189896622-190044605:-,collagen_type_V_alpha_2,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	PPP3CA--MELK	2	0	PPP3CA	13610	chr4:102001689:-	MELK	40521	chr9:36657238:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha,MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	TCF7--CTD-2410N18.5	2	0	TCF7	2323	chr5:133451724:+	CTD-2410N18.5	20410	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_INVERSION:+:-:[15305],TCF7->chr5:133450402-133487556:+,transcription_factor_7_(T-cell_specific,_HMG-box),CTD-2410N18.5->chr5:133502861-133561762:-	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	2	0	4	1	TRUE	ACH-000883
K029AX_SKIN	INO80C--LMTK3	6	5	INO80C	3271	chr18:33069296:-	LMTK3	22792	chr19:49004819:-	ONLY_REF_SPLICE	YES	33	0	0.25	1	0.0905	0.0754	INO80C->INO80_complex_subunit_C,chr18:33032194-33077955:-,LMTK3->chr19:48988528-49016446:-,lemur_tyrosine_kinase_3	K029AX_SKIN	0.25	1	0.1659	TRUE	0	0	0	1	0	TRUE	ACH-000404
K029AX_SKIN	ZNF670--RP11-439E19.8	7	1	ZNF670	1218	chr1:247241896:-	RP11-439E19.8	20857	chr1:246973335:-	ONLY_REF_SPLICE	YES	8	0	0.5	1	0.1056	0.0151	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,RP11-439E19.8->chr1:246935139-246993361:-	K029AX_SKIN	0.5	1	0.1207	TRUE	0	0	0	1	0	TRUE	ACH-000404
K029AX_SKIN	ALDOA--GDF15	3	0	ALDOA	7448	chr16:30077220:+	GDF15	17821	chr19:18496990:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,GDF15->Oncogene{Bushman},chr19:18485541-18499986:+,growth_differentiation_factor_15	K029AX_SKIN	1	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000404
K029AX_SKIN	SS18L1--PSMA7	2	0	SS18L1	1124	chr20:60718945:+	PSMA7	21021	chr20:60716000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_INVERSION:+:-:[326],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	K029AX_SKIN	1	1	0.0302	TRUE	0	1	0	2	1	TRUE	ACH-000404
G401_SOFT_TISSUE	CNTN6--AC090044.1	3	1	CNTN6	1545	chr3:1134804:+	AC090044.1	35601	chr3:884059:+	ONLY_REF_SPLICE	YES	0	17	1	0.19	0.037	0.0123	CNTN6->Oncogene{Bushman},chr3:1134260-1445901:+,contactin_6,AC090044.1->chr3:577914-887698:+	G401_SOFT_TISSUE	0.19	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000096
G401_SOFT_TISSUE	EIF5A--COASY	2	0	EIF5A	1754	chr17:7211071:+	COASY	12416	chr17:40716464:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,COASY->Coenzyme_A_synthase,chr17:40713485-40718295:+	G401_SOFT_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000096
G401_SOFT_TISSUE	RP11-543D5.1--D2HGDH	2	0	RP11-543D5.1	1120	chr1:48154254:+	D2HGDH	9481	chr2:242680448:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	RP11-543D5.1->chr1:48154135-48169055:+,D2HGDH->D-2-hydroxyglutarate_dehydrogenase,chr2:242673994-242708231:+	G401_SOFT_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000096
G401_SOFT_TISSUE	STIP1--PPP2R5B	2	0	STIP1	3460	chr11:63960759:+	PPP2R5B	24886	chr11:64698908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1,PPP2R5B->chr11:64685025-64701945:+,protein_phosphatase_2_regulatory_subunit_B',_beta	G401_SOFT_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000096
G401_SOFT_TISSUE	TOP2B--NGLY1	2	0	TOP2B	15040	chr3:25668678:-	NGLY1	48803	chr3:25775473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},LOCAL_REARRANGEMENT:-:[54037],TOP2B->Oncogene{Bushman},chr3:25639475-25706398:-,topoisomerase_(DNA)_II_beta,NGLY1->N-glycanase_1,chr3:25760435-25831530:-	G401_SOFT_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000096
G401_SOFT_TISSUE	ZNF770--L3MBTL3	2	0	ZNF770	1731	chr15:35279758:-	L3MBTL3	16244	chr6:130343372:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	ZNF770->chr15:35270542-35280488:-,zinc_finger_protein_770,L3MBTL3->chr6:130334844-130462594:+,l(3)mbt-like_3_(Drosophila)	G401_SOFT_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000096
G401_SOFT_TISSUE	CNTN6--AC090044.1	1	1	CNTN6	1545	chr3:1134804:+	AC090044.1	34505	chr3:882398:+	ONLY_REF_SPLICE	NO	0	13	1	0.13	0.0123	0.0123	CNTN6->Oncogene{Bushman},chr3:1134260-1445901:+,contactin_6,AC090044.1->chr3:577914-887698:+	G401_SOFT_TISSUE	0.13	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000096
DMS53_LUNG	KRT7--OR7E47P	92	113	KRT7	10701	chr12:52639416:+	OR7E47P	21103	chr12:52501163:+	ONLY_REF_SPLICE	YES	1681	14	0.11	0.94	1.1362	1.3955	KRT7->chr12:52626304-52645970:+,keratin_7,OR7E47P->chr12:52473480-52502045:+,olfactory_receptor_family_7_subfamily_E_member_47_pseudogene	DMS53_LUNG	0.11	0.94	2.5317	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	KRT7--OR7E47P	74	120	KRT7	12255	chr12:52641995:+	OR7E47P	21103	chr12:52501163:+	ONLY_REF_SPLICE	YES	1575	14	0.11	0.93	0.9139	1.482	KRT7->chr12:52626304-52645970:+,keratin_7,OR7E47P->chr12:52473480-52502045:+,olfactory_receptor_family_7_subfamily_E_member_47_pseudogene	DMS53_LUNG	0.11	0.93	2.3959	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RASSF8--TSPAN9	99	2	RASSF8	1120	chr12:26112081:+	TSPAN9	29856	chr12:3387587:+	ONLY_REF_SPLICE	YES	0	108	1	0.48	1.2226	0.0247	RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,TSPAN9->chr12:3186521-3395730:+,tetraspanin_9	DMS53_LUNG	0.48	1	1.2473	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	R3HCC1L--RP11-887P2.3	63	83	R3HCC1L	3647	chr10:99923154:+	RP11-887P2.3	17427	chr12:94035223:-	INCL_NON_REF_SPLICE	YES	26	570	0.85	0.2	0.778	1.025	R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+,RP11-887P2.3->chr12:94034598-94035362:-	DMS53_LUNG	0.2	0.85	1.803	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	NLRP1--STAT5A	61	1	NLRP1	1094	chr17:5522651:-	STAT5A	36362	chr17:40443990:+	ONLY_REF_SPLICE	YES	0	57	1	0.52	0.7533	0.0123	NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	DMS53_LUNG	0.52	1	0.7656	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	GALNT8--PRMT8	35	29	GALNT8	10904	chr12:4874712:+	PRMT8	27992	chr12:3662817:+	ONLY_REF_SPLICE	YES	167	126	0.28	0.34	0.4322	0.3581	{Klijn_CCL:Lung=1},GALNT8->chr12:4829507-4960277:+,polypeptide_N-acetylgalactosaminyltransferase_8,PRMT8->chr12:3490515-3703139:+,protein_arginine_methyltransferase_8	DMS53_LUNG	0.28	0.34	0.7903	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	NLRP1--STAT5A	27	1	NLRP1	1094	chr17:5522651:-	STAT5A	37452	chr17:40447637:+	ONLY_REF_SPLICE	YES	0	60	1	0.32	0.3334	0.0123	NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	DMS53_LUNG	0.32	1	0.3457	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	KIF26B--EFCAB2	19	18	KIF26B	17029	chr1:245809582:+	EFCAB2	50282	chr1:245285222:+	ONLY_REF_SPLICE	YES	33	1	0.53	0.97	0.2346	0.2223	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	DMS53_LUNG	0.53	0.97	0.4569	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	TMEM260--RAB1B	18	22	TMEM260	23560	chr14:57103316:+	RAB1B	32086	chr11:66039268:+	ONLY_REF_SPLICE	YES	55	45	0.42	0.47	0.2223	0.2717	TMEM260->chr14:56955072-57117324:+,transmembrane_protein_260,RAB1B->RAB1B,_member_RAS_oncogene_family,chr11:66036004-66044963:+	DMS53_LUNG	0.42	0.47	0.494	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	USP43--CNTLN	17	18	USP43	4675	chr17:9570068:+	CNTLN	28400	chr9:17226201:+	ONLY_REF_SPLICE	YES	20	26	0.64	0.57	0.2099	0.2223	{Klijn_CCL:Lung=1},USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43,CNTLN->centlein,chr9:17134980-17503921:+	DMS53_LUNG	0.57	0.64	0.4322	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	CPNE8--TRIM3	18	10	CPNE8	13645	chr12:39124085:-	TRIM3	36065	chr11:6486962:-	ONLY_REF_SPLICE	YES	42	19	0.4	0.6	0.2223	0.1235	CPNE8->chr12:39040624-39301232:-,copine_8,TRIM3->chr11:6469843-6495689:-,tripartite_motif_containing_3	DMS53_LUNG	0.4	0.6	0.3458	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	WHSC1L1--RP11-395E19.7	15	16	WHSC1L1	1474	chr8:38239317:-	RP11-395E19.7	42186	chr9:40741559:-	ONLY_REF_SPLICE	YES	75	0	0.29	1	0.1852	0.1976	WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-,RP11-395E19.7->chr9:40740776-40742447:-	DMS53_LUNG	0.29	1	0.3828	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	NLRP1--STAT5A	17	2	NLRP1	1094	chr17:5522651:-	STAT5A	33238	chr17:40440074:+	ONLY_REF_SPLICE	YES	0	31	1	0.38	0.2099	0.0247	NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	DMS53_LUNG	0.38	1	0.2346	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	HERC1--DAPK2	12	13	HERC1	1121	chr15:64126021:-	DAPK2	109704	chr15:64200799:-	ONLY_REF_SPLICE	YES	3	13	0.89	0.66	0.1482	0.1605	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[73094],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	DMS53_LUNG	0.66	0.89	0.3087	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	KIF26B--EFCAB2	7	23	KIF26B	17029	chr1:245809582:+	EFCAB2	45790	chr1:245250547:+	ONLY_REF_SPLICE	YES	33	7	0.48	0.81	0.0864	0.284	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	DMS53_LUNG	0.48	0.81	0.3704	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	GALNT8--PRMT8	4	31	GALNT8	10904	chr12:4874712:+	PRMT8	27044	chr12:3661869:+	ONLY_REF_SPLICE	YES	167	144	0.17	0.2	0.0494	0.3828	{Klijn_CCL:Lung=1},GALNT8->chr12:4829507-4960277:+,polypeptide_N-acetylgalactosaminyltransferase_8,PRMT8->chr12:3490515-3703139:+,protein_arginine_methyltransferase_8	DMS53_LUNG	0.17	0.2	0.4322	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	HERC1--DAPK2	8	10	HERC1	1116	chr15:64126026:-	DAPK2	109704	chr15:64200799:-	ONLY_REF_SPLICE	YES	2	13	0.9	0.58	0.0988	0.1235	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[73094],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	DMS53_LUNG	0.58	0.9	0.2223	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	AP003900.6--RP11-435B5.4	9	0	AP003900.6	1122	chr21:11169841:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1111	0	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	DMS53_LUNG	1	1	0.1111	TRUE	1	3	0	6	3	TRUE	ACH-000698
DMS53_LUNG	GALNT4--MGAT4C	6	3	GALNT4	2143	chr12:89918897:-	MGAT4C	10880	chr12:87232657:-	INCL_NON_REF_SPLICE	YES	19	0	0.32	1	0.0741	0.037	GALNT4->chr12:89913185-89920039:-,polypeptide_N-acetylgalactosaminyltransferase_4,MGAT4C->MGAT4_family_member_C,chr12:86372516-87232681:-	DMS53_LUNG	0.32	1	0.1111	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RASSF8--TSPAN9	6	2	RASSF8	1120	chr12:26112081:+	TSPAN9	29933	chr12:3387664:+	INCL_NON_REF_SPLICE	YES	0	120	1	0.06	0.0741	0.0247	RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,TSPAN9->chr12:3186521-3395730:+,tetraspanin_9	DMS53_LUNG	0.06	1	0.0988	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RASSF8--TSPAN9	6	2	RASSF8	1120	chr12:26112081:+	TSPAN9	28698	chr12:3382255:+	INCL_NON_REF_SPLICE	YES	0	95	1	0.08	0.0741	0.0247	RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,TSPAN9->chr12:3186521-3395730:+,tetraspanin_9	DMS53_LUNG	0.08	1	0.0988	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	NLRP1--STAT5A	6	1	NLRP1	1094	chr17:5522651:-	STAT5A	34584	chr17:40441420:+	ONLY_REF_SPLICE	YES	0	7	1	0.5	0.0741	0.0123	NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	DMS53_LUNG	0.5	1	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	PEX5L--STRADB	6	1	PEX5L	1475	chr3:179754367:-	STRADB	34792	chr2:202319469:+	ONLY_REF_SPLICE	YES	7	6	0.5	0.54	0.0741	0.0123	PEX5L->chr3:179512746-179754841:-,peroxisomal_biogenesis_factor_5-like,STRADB->STE20-related_kinase_adaptor_beta,chr2:202252581-202345569:+	DMS53_LUNG	0.5	0.54	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	WHSC1L1--RP11-395E19.7	2	17	WHSC1L1	1474	chr8:38239317:-	RP11-395E19.7	41298	chr9:40742447:-	ONLY_REF_SPLICE	YES	75	0	0.2	1	0.0247	0.2099	WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-,RP11-395E19.7->chr9:40740776-40742447:-	DMS53_LUNG	0.2	1	0.2346	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	ESYT2--AC073316.2	5	2	ESYT2	2165	chr7:158621780:-	AC073316.2	33381	chr7:3236562:-	ONLY_REF_SPLICE	YES	4	4	0.64	0.64	0.0617	0.0247	ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2,AC073316.2->chr7:3236258-3237888:-	DMS53_LUNG	0.64	0.64	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	ABR--CDK14	5	0	ABR	39995	chr17:906926:-	CDK14	66182	chr7:90675212:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0617	0	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14	DMS53_LUNG	1	1	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	NLRP1--STAT5A	4	1	NLRP1	1094	chr17:5522651:-	STAT5A	37457	chr17:40447642:+	INCL_NON_REF_SPLICE	YES	0	57	1	0.08	0.0494	0.0123	NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	DMS53_LUNG	0.08	1	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	NLRP1--STAT5A	4	1	NLRP1	1094	chr17:5522651:-	STAT5A	35048	chr17:40441884:+	ONLY_REF_SPLICE	YES	0	32	1	0.14	0.0494	0.0123	NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	DMS53_LUNG	0.14	1	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	KIF26B--EFCAB2	3	4	KIF26B	17029	chr1:245809582:+	EFCAB2	52669	chr1:245287609:+	INCL_NON_REF_SPLICE	YES	33	7	0.17	0.5	0.037	0.0494	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	DMS53_LUNG	0.17	0.5	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	PEX5L--STRADB	3	2	PEX5L	4648	chr3:179689382:-	STRADB	34792	chr2:202319469:+	ONLY_REF_SPLICE	YES	7	6	0.42	0.45	0.037	0.0247	PEX5L->chr3:179512746-179754841:-,peroxisomal_biogenesis_factor_5-like,STRADB->STE20-related_kinase_adaptor_beta,chr2:202252581-202345569:+	DMS53_LUNG	0.42	0.45	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	ST3GAL3--KDM4A	3	1	ST3GAL3	5679	chr1:44257820:+	KDM4A	27365	chr1:44118808:+	ONLY_REF_SPLICE	YES	33	25	0.11	0.14	0.037	0.0123	LOCAL_REARRANGEMENT:+:[309],ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,KDM4A->chr1:44115829-44171186:+,lysine_demethylase_4A	DMS53_LUNG	0.11	0.14	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	ABR--CDK14	3	0	ABR	40037	chr17:906884:-	CDK14	66182	chr7:90675212:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14	DMS53_LUNG	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	LTBP3--VPRBP	3	0	LTBP3	12002	chr11:65311946:-	VPRBP	27541	chr3:51475690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3,VPRBP->Vpr_(HIV-1)_binding_protein,chr3:51433298-51534010:-	DMS53_LUNG	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	PTPRN2--SCN2A	2	3	PTPRN2	15088	chr7:157691365:-	SCN2A	48170	chr2:166198806:+	ONLY_REF_SPLICE	YES	86	14	0.05	0.26	0.0247	0.037	PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,SCN2A->chr2:166095912-166248818:+,sodium_voltage-gated_channel_alpha_subunit_2	DMS53_LUNG	0.05	0.26	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	AP003900.6--RP11-435B5.4	2	1	AP003900.6	3299	chr21:11174002:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	6	1	0.33	0.75	0.0247	0.0123	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	DMS53_LUNG	0.33	0.75	0.037	TRUE	0	1	0	4	1	TRUE	ACH-000698
DMS53_LUNG	BCLAF1--ZNF330	2	0	BCLAF1	1139	chr6:136610851:-	ZNF330	29086	chr4:142150725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-,ZNF330->chr4:142142041-142155851:+,zinc_finger_protein_330	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	CACNA2D1--BAZ2B	2	0	CACNA2D1	4816	chr7:81964451:-	BAZ2B	66967	chr2:160295723:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	CACNA2D1->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_1,chr7:81575760-82073114:-,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	CDKL2--ZNF138	2	0	CDKL2	2872	chr4:76551005:-	ZNF138	23726	chr7:64291829:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	CDKL2->chr4:76503215-76555900:-,cyclin_dependent_kinase_like_2,ZNF138->chr7:64254766-64294054:+,zinc_finger_protein_138	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	P4HTM--EEF1B2	2	0	P4HTM	2029	chr3:49028347:+	EEF1B2	18916	chr2:207027213:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	P4HTM->chr3:49027319-49044587:+,prolyl_4-hydroxylase,_transmembrane,EEF1B2->chr2:207024309-207027652:+,eukaryotic_translation_elongation_factor_1_beta_2	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	POLR3E--C9orf3	2	0	POLR3E	14659	chr16:22334252:+	C9orf3	64401	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	POLR3E->chr16:22308730-22346424:+,polymerase_(RNA)_III_subunit_E,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RP11-1379J22.5--AIMP2	2	0	RP11-1379J22.5	1720	chr5:179085482:+	AIMP2	11127	chr7:6057445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	RP11-1379J22.5->chr5:179084763-179091433:+,AIMP2->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_2,chr7:6048876-6063465:+	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RP11-727A23.5--LARP4	2	0	RP11-727A23.5	3740	chr11:82902097:-	LARP4	26132	chr12:50854918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	RP11-727A23.5->chr11:82895533-82904836:-,LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	TMTC1--KLHL42	2	0	TMTC1	2310	chr12:29936383:-	KLHL42	45477	chr12:27944641:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	TMTC1->chr12:29653773-29937692:-,transmembrane_and_tetratricopeptide_repeat_containing_1,KLHL42->chr12:27932953-27955973:+,kelch_like_family_member_42	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	UACA--CCDC91	2	0	UACA	5892	chr15:70987356:-	CCDC91	48817	chr12:28458582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	UACA->chr15:70946893-71055932:-,uveal_autoantigen_with_coiled-coil_domains_and_ankyrin_repeats,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	ZNF791--HTT	2	0	ZNF791	4345	chr19:12735524:+	HTT	43820	chr4:3174047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	ZNF791->chr19:12721732-12742735:+,zinc_finger_protein_791,HTT->chr4:3076408-3245676:+,huntingtin	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	GPHN--PLEKHH1	1	3	GPHN	9718	chr14:67291284:+	PLEKHH1	39573	chr14:68008551:+	ONLY_REF_SPLICE	YES	19	0	0.17	1	0.0123	0.037	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,PLEKHH1->chr14:68000018-68056329:+,pleckstrin_homology,_MyTH4_and_FERM_domain_containing_H1	DMS53_LUNG	0.17	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	TAS1R3--SCNN1D	1	2	TAS1R3	2493	chr1:1268186:+	SCNN1D	15824	chr1:1226017:+	ONLY_REF_SPLICE	YES	5	1	0.38	0.75	0.0123	0.0247	LOCAL_REARRANGEMENT:+:[39285],TAS1R3->chr1:1266694-1270686:+,taste_1_receptor_member_3,SCNN1D->chr1:1215816-1227409:+,sodium_channel_epithelial_1_delta_subunit	DMS53_LUNG	0.38	0.75	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	NEGR1--PTGER3	1	1	NEGR1	4961	chr1:72241855:-	PTGER3	38434	chr1:71419472:-	ONLY_REF_SPLICE	YES	47	3	0.04	0.4	0.0123	0.0123	NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1,PTGER3->chr1:71318036-71513491:-,prostaglandin_E_receptor_3	DMS53_LUNG	0.04	0.4	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000698
NCIH2066_LUNG	LDLR--SMARCA4	632	631	LDLR	13239	chr19:11224438:+	SMARCA4	64754	chr19:11168934:+	ONLY_REF_SPLICE	YES	46	223	0.96	0.85	7.208	7.1966	LOCAL_REARRANGEMENT:+:[23967],LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	NCIH2066_LUNG	0.85	0.96	14.4046	TRUE	0	2	0	2	0	TRUE	ACH-000727
NCIH2066_LUNG	LDLR--SMARCA4	589	631	LDLR	13239	chr19:11224438:+	SMARCA4	64751	chr19:11168931:+	ONLY_REF_SPLICE	YES	46	223	0.96	0.85	6.7176	7.1966	LOCAL_REARRANGEMENT:+:[23967],LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	NCIH2066_LUNG	0.85	0.96	13.9142	TRUE	0	2	0	2	0	TRUE	ACH-000727
NCIH2066_LUNG	TLK1--PPM1F	123	81	TLK1	2781	chr2:172016800:-	PPM1F	45646	chr22:22288598:-	ONLY_REF_SPLICE	YES	37	112	0.85	0.65	1.4028	0.9238	TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1,PPM1F->chr22:22273793-22307209:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1F	NCIH2066_LUNG	0.65	0.85	2.3266	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	MFNG--CARD10	45	29	MFNG	5905	chr22:37875383:-	CARD10	20964	chr22:37906428:-	ONLY_REF_SPLICE	YES	5	26	0.94	0.74	0.5132	0.3307	LOCAL_REARRANGEMENT:-:[3961],MFNG->MFNG_O-fucosylpeptide_3-beta-N-acetylglucosaminyltransferase,chr22:37865101-37882439:-,CARD10->caspase_recruitment_domain_family_member_10,chr22:37886400-37915549:-	NCIH2066_LUNG	0.74	0.94	0.8439	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	PAN3--PRSS53	39	14	PAN3	7152	chr13:28794515:+	PRSS53	30421	chr16:31097812:-	ONLY_REF_SPLICE	YES	14	4	0.79	0.93	0.4448	0.1597	PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+,PRSS53->chr16:31094746-31100949:-,protease,_serine_53	NCIH2066_LUNG	0.79	0.93	0.6045	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	FLOT1--LINC00243	28	13	FLOT1	1207	chr6:30710304:-	LINC00243	14145	chr6:30766549:-	ONLY_REF_SPLICE	YES	99	0	0.29	1	0.3193	0.1483	LOCAL_REARRANGEMENT:-:[55921],FLOT1->chr6:30695486-30710510:-,flotillin_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	NCIH2066_LUNG	0.29	1	0.4676	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	SSH1--SVOP	25	14	SSH1	23965	chr12:109179276:-	SVOP	41419	chr12:109316573:-	INCL_NON_REF_SPLICE	YES	45	41	0.46	0.49	0.2851	0.1597	LOCAL_REARRANGEMENT:-:[53292],SSH1->chr12:109176466-109251366:-,slingshot_protein_phosphatase_1,SVOP->SV2_related_protein,chr12:109304658-109459045:-	NCIH2066_LUNG	0.46	0.49	0.4448	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	ZNF571--AHSP	19	18	ZNF571	3950	chr19:38074872:-	AHSP	14245	chr16:31539457:+	ONLY_REF_SPLICE	YES	7	0	0.84	1	0.2167	0.2053	ZNF571->chr19:38045684-38085673:-,zinc_finger_protein_571,AHSP->alpha_hemoglobin_stabilizing_protein,chr16:31539185-31540124:+	NCIH2066_LUNG	0.84	1	0.422	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	AC009065.3--ABCA3	20	7	AC009065.3	1038	chr16:2255100:-	ABCA3	19067	chr16:2347540:-	INCL_NON_REF_SPLICE	YES	0	92	1	0.23	0.2281	0.0798	LOCAL_REARRANGEMENT:-:[70745],AC009065.3->chr16:2255031-2255137:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	NCIH2066_LUNG	0.23	1	0.3079	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RYR2--BRINP3	14	25	RYR2	35874	chr1:237732619:+	BRINP3	139093	chr1:190130020:-	ONLY_REF_SPLICE	YES	2	1	0.95	0.97	0.1597	0.2851	RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2,BRINP3->BMP/retinoic_acid_inducible_neural_specific_3,chr1:190066792-190446759:-	NCIH2066_LUNG	0.95	0.97	0.4448	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	STK4--YWHAB	15	10	STK4	14482	chr20:43629994:+	YWHAB	28745	chr20:43530172:+	ONLY_REF_SPLICE	YES	33	198	0.43	0.11	0.1711	0.1141	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[57942],STK4->Oncogene{Bushman},chr20:43595115-43708600:+,serine/threonine_kinase_4,YWHAB->chr20:43514317-43537173:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_beta	NCIH2066_LUNG	0.11	0.43	0.2852	TRUE	0	0	0	2	0	TRUE	ACH-000727
NCIH2066_LUNG	ADCY1--HECW1	15	9	ADCY1	4312	chr7:45650096:+	HECW1	72271	chr7:43580762:+	ONLY_REF_SPLICE	YES	78	0	0.24	1	0.1711	0.1026	ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+,HECW1->HECT,_C2_and_WW_domain_containing_E3_ubiquitin_protein_ligase_1,chr7:43152198-43605600:+	NCIH2066_LUNG	0.24	1	0.2737	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	PIAS1--DPP6	14	11	PIAS1	16286	chr15:68468992:+	DPP6	34894	chr7:154263927:+	ONLY_REF_SPLICE	YES	20	0	0.56	1	0.1597	0.1255	PIAS1->chr15:68346517-68483096:+,protein_inhibitor_of_activated_STAT_1,DPP6->chr7:153584182-154685995:+,dipeptidyl_peptidase_like_6	NCIH2066_LUNG	0.56	1	0.2852	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	TATDN1--DEPTOR	14	7	TATDN1	8556	chr8:125527987:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	82	6	0.2	0.78	0.1597	0.0798	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH2066_LUNG	0.2	0.78	0.2395	TRUE	0	0	0	6	0	TRUE	ACH-000727
NCIH2066_LUNG	PAN3--PRSS53	9	18	PAN3	8292	chr13:28813833:+	PRSS53	30421	chr16:31097812:-	ONLY_REF_SPLICE	YES	16	4	0.63	0.87	0.1026	0.2053	PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+,PRSS53->chr16:31094746-31100949:-,protease,_serine_53	NCIH2066_LUNG	0.63	0.87	0.3079	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	CDC16--RP11-435B5.4	12	5	CDC16	13459	chr13:115024873:+	RP11-435B5.4	23941	chr1:143465438:-	ONLY_REF_SPLICE	YES	46	0	0.27	1	0.1369	0.057	CDC16->cell_division_cycle_16,chr13:115000362-115038198:+,RP11-435B5.4->chr1:143354963-143467632:-	NCIH2066_LUNG	0.27	1	0.1939	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	KIF1A--C2orf54	11	1	KIF1A	1187	chr2:241759539:-	C2orf54	58750	chr2:241831180:-	ONLY_REF_SPLICE	YES	0	99	1	0.11	0.1255	0.0114	LOCAL_REARRANGEMENT:-:[65740],KIF1A->chr2:241653181-241759725:-,kinesin_family_member_1A,C2orf54->chr2:241825465-241836306:-,chromosome_2_open_reading_frame_54	NCIH2066_LUNG	0.11	1	0.1369	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	TMEM50A--RHD	9	3	TMEM50A	7711	chr1:25683344:+	RHD	14717	chr1:25611064:+	ONLY_REF_SPLICE	YES	144	0	0.08	1	0.1026	0.0342	LOCAL_REARRANGEMENT:+:[7472],TMEM50A->chr1:25664408-25688852:+,transmembrane_protein_50A,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	NCIH2066_LUNG	0.08	1	0.1368	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	BCLAF1--MAP7	9	0	BCLAF1	1139	chr6:136610851:-	MAP7	32142	chr6:136704919:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1026	0	LOCAL_REARRANGEMENT:-:[52886],BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	NCIH2066_LUNG	1	1	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	ZNF571--AHSP	8	2	ZNF571	2764	chr19:38077569:-	AHSP	14245	chr16:31539457:+	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0912	0.0228	ZNF571->chr19:38045684-38085673:-,zinc_finger_protein_571,AHSP->alpha_hemoglobin_stabilizing_protein,chr16:31539185-31540124:+	NCIH2066_LUNG	0.67	1	0.114	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	G2E3--RP11-351M16.3	7	2	G2E3	14582	chr14:31067805:+	RP11-351M16.3	31079	chr10:28725150:-	ONLY_REF_SPLICE	YES	82	0	0.1	1	0.0798	0.0228	G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+,RP11-351M16.3->chr10:28721937-28784742:-	NCIH2066_LUNG	0.1	1	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	MTMR3--HSCB	7	2	MTMR3	5311	chr22:30375041:+	HSCB	37458	chr22:29147229:+	ONLY_REF_SPLICE	YES	52	30	0.15	0.23	0.0798	0.0228	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,HSCB->HscB_mitochondrial_iron-sulfur_cluster_co-chaperone,chr22:29138019-29153503:+	NCIH2066_LUNG	0.15	0.23	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-681L8.1--STPG2	7	0	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0798	0	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH2066_LUNG	1	1	0.0798	TRUE	0	6	0	7	6	TRUE	ACH-000727
NCIH2066_LUNG	ADCY1--HECW1	3	13	ADCY1	5424	chr7:45662342:+	HECW1	72271	chr7:43580762:+	ONLY_REF_SPLICE	YES	75	0	0.18	1	0.0342	0.1483	ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+,HECW1->HECT,_C2_and_WW_domain_containing_E3_ubiquitin_protein_ligase_1,chr7:43152198-43605600:+	NCIH2066_LUNG	0.18	1	0.1825	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	LINC01036--LCE5A	5	3	LINC01036	1105	chr1:187062078:+	LCE5A	8529	chr1:152483990:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0.0342	LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LCE5A->chr1:152483320-152484653:+,late_cornified_envelope_5A	NCIH2066_LUNG	1	1	0.0912	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	TATDN1--DEPTOR	5	0	TATDN1	1434	chr8:125551266:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH2066_LUNG	1	1	0.057	TRUE	0	0	0	2	0	TRUE	ACH-000727
NCIH2066_LUNG	SPAG1--POLR2K	3	4	SPAG1	17961	chr8:101245765:+	POLR2K	26625	chr8:101163575:+	ONLY_REF_SPLICE	YES	32	4	0.18	0.64	0.0342	0.0456	LOCAL_REARRANGEMENT:+:[3904],SPAG1->chr8:101170134-101271506:+,sperm_associated_antigen_1,POLR2K->chr8:101162812-101166230:+,polymerase_(RNA)_II_subunit_K	NCIH2066_LUNG	0.18	0.64	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	EIF2AK2--PRKD3	3	3	EIF2AK2	17642	chr2:37334401:-	PRKD3	32960	chr2:37520414:-	INCL_NON_REF_SPLICE	YES	24	71	0.2	0.08	0.0342	0.0342	PROTCLUST,{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:-:[93437],EIF2AK2->Oncogene{Bushman},chr2:37326353-37384208:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_2,PRKD3->chr2:37477645-37551951:-,protein_kinase_D3	NCIH2066_LUNG	0.08	0.2	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	TATDN1--DEPTOR	2	7	TATDN1	8415	chr8:125528128:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	86	6	0.09	0.6	0.0228	0.0798	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH2066_LUNG	0.09	0.6	0.1026	TRUE	0	0	0	6	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-692D12.1--RYR2	3	2	RP11-692D12.1	1200	chr4:74125125:+	RYR2	85563	chr1:237868513:+	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0342	0.0228	RP11-692D12.1->chr4:74124926-74183670:+,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	NCIH2066_LUNG	0.56	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	MYRIP--PLK1S1	2	3	MYRIP	3942	chr3:39942417:+	PLK1S1	28615	chr20:21112738:+	ONLY_REF_SPLICE	YES	1	22	0.83	0.19	0.0228	0.0342	MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein,PLK1S1->Oncogene{Bushman},chr20:21106624-21227260:+	NCIH2066_LUNG	0.19	0.83	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	PAN3--PRSS53	2	2	PAN3	4842	chr13:28752072:+	PRSS53	30421	chr16:31097812:-	ONLY_REF_SPLICE	YES	36	4	0.1	0.5	0.0228	0.0228	PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+,PRSS53->chr16:31094746-31100949:-,protease,_serine_53	NCIH2066_LUNG	0.1	0.5	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-692D12.1--RYR2	2	2	RP11-692D12.1	2330	chr4:74135670:+	RYR2	85563	chr1:237868513:+	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0228	0.0228	RP11-692D12.1->chr4:74124926-74183670:+,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	NCIH2066_LUNG	0.44	1	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	TATDN1--DEPTOR	2	2	TATDN1	7195	chr8:125531059:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	102	6	0.04	0.4	0.0228	0.0228	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH2066_LUNG	0.04	0.4	0.0456	TRUE	0	0	0	2	0	TRUE	ACH-000727
NCIH2066_LUNG	ABCB9--A1CF	2	0	ABCB9	5243	chr12:123459262:-	A1CF	46056	chr10:52570936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ABCB9->ATP_binding_cassette_subfamily_B_member_9,chr12:123405498-123466196:-,A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	ANKRD11--SESTD1	2	0	ANKRD11	21283	chr16:89354936:-	SESTD1	51017	chr2:179997153:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,SESTD1->SEC14_and_spectrin_domain_containing_1,chr2:179966419-180129517:-	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	CD2AP--ERICH1	2	0	CD2AP	1460	chr6:47445984:+	ERICH1	34102	chr8:624047:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CD2AP->CD2-associated_protein,chr6:47445525-47594999:+,ERICH1->Oncogene{Bushman},chr8:564746-688106:-,glutamate_rich_1	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	DYNC1I1--PEG10	2	0	DYNC1I1	10897	chr7:95499310:+	PEG10	31134	chr7:94292646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	DYNC1I1->chr7:95401866-95739634:+,dynein_cytoplasmic_1_intermediate_chain_1,PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	HNRNPA2B1--SKAP2	2	0	HNRNPA2B1	1958	chr7:26240192:-	SKAP2	23355	chr7:26883756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,SKAP2->chr7:26706681-27034858:-,src_kinase_associated_phosphoprotein_2	NCIH2066_LUNG	1	1	0.0228	TRUE	0	1	0	1	1	TRUE	ACH-000727
NCIH2066_LUNG	KMT2E--DNAJC2	2	0	KMT2E	7277	chr7:104704027:+	DNAJC2	39857	chr7:102968201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	PSMA1--FAM104B	2	0	PSMA1	2367	chr11:14632512:-	FAM104B	20747	chrX:55172744:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1,FAM104B->chrX:55169535-55187743:-,family_with_sequence_similarity_104_member_B	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	PTBP3--RAD23B	2	0	PTBP3	1198	chr9:115095750:-	RAD23B	35019	chr9:110087115:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RFX6--ERP44	2	0	RFX6	16694	chr6:117245954:+	ERP44	36268	chr9:102747351:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	RFX6->chr6:117198375-117253326:+,regulatory_factor_X6,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-435B5.4--AMACR	2	0	RP11-435B5.4	2843	chr1:143465380:-	AMACR	20941	chr5:34006004:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	RP11-435B5.4->chr1:143354963-143467632:-,AMACR->alpha-methylacyl-CoA_racemase,chr5:33986283-34008220:-	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-681L8.1--STPG2	2	0	RP11-681L8.1	3504	chr4:98313793:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH2066_LUNG	1	1	0.0228	TRUE	0	10	0	4	10	TRUE	ACH-000727
NCIH2066_LUNG	TMEM41A--THAP4	2	0	TMEM41A	2810	chr3:185214616:-	THAP4	29853	chr2:242524140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	TMEM41A->chr3:185194284-185216845:-,transmembrane_protein_41A,THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	TPX2--HM13	2	0	TPX2	11582	chr20:30366787:+	HM13	35658	chr20:30142549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	TTC13--ZKSCAN1	2	0	TTC13	25067	chr1:231044458:-	ZKSCAN1	33219	chr7:99621042:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	TTC13->chr1:231041989-231114621:-,tetratricopeptide_repeat_domain_13,ZKSCAN1->chr7:99613204-99639312:+,zinc_finger_with_KRAB_and_SCAN_domains_1	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	ZNF571--AHSP	2	0	ZNF571	1032	chr19:38085642:-	AHSP	14245	chr16:31539457:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ZNF571->chr19:38045684-38085673:-,zinc_finger_protein_571,AHSP->alpha_hemoglobin_stabilizing_protein,chr16:31539185-31540124:+	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	AP003900.6--AC008132.1	1	3	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	NO	1	7	0.8	0.36	0.0114	0.0342	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH2066_LUNG	0.36	0.8	0.0456	TRUE	0	0	0	13	0	TRUE	ACH-000727
NCIH2066_LUNG	C16orf58--ZNF571-AS1	1	1	C16orf58	2546	chr16:31519085:-	ZNF571-AS1	26027	chr19:38076240:+	ONLY_REF_SPLICE	YES	33	2	0.06	0.5	0.0114	0.0114	C16orf58->chr16:31500792-31520630:-,chromosome_16_open_reading_frame_58,ZNF571-AS1->ZNF571_antisense_RNA_1,chr19:38039816-38078249:+	NCIH2066_LUNG	0.06	0.5	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	MYRIP--PLK1S1	1	1	MYRIP	3942	chr3:39942417:+	PLK1S1	31081	chr20:21126206:+	ONLY_REF_SPLICE	YES	1	21	0.67	0.09	0.0114	0.0114	MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein,PLK1S1->Oncogene{Bushman},chr20:21106624-21227260:+	NCIH2066_LUNG	0.09	0.67	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
SNUC2A_LARGE_INTESTINE	C1orf159--PRKCZ	63	37	C1orf159	7717	chr1:1025733:-	PRKCZ	42422	chr1:2100957:+	ONLY_REF_SPLICE	YES	48	138	0.68	0.42	0.7483	0.4395	C1orf159->chr1:1017198-1051741:-,chromosome_1_open_reading_frame_159,PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta	SNUC2A_LARGE_INTESTINE	0.42	0.68	1.1878	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-392P7.6--APOLD1	33	2	RP11-392P7.6	1078	chr12:13080737:+	APOLD1	24118	chr12:12965195:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.392	0.0238	LOCAL_REARRANGEMENT:+:[97751],RP11-392P7.6->chr12:13080660-13137579:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	SNUC2A_LARGE_INTESTINE	0.97	1	0.4158	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	HRH1--PHAX	29	0	HRH1	9189	chr3:11303522:+	PHAX	20578	chr5:125961293:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3445	0	HRH1->chr3:11178779-11305243:+,histamine_receptor_H1,PHAX->chr5:125935960-125962944:+,phosphorylated_adaptor_for_RNA_export	SNUC2A_LARGE_INTESTINE	1	1	0.3445	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	TUBGCP6--MAPK12	25	14	TUBGCP6	16163	chr22:50656917:-	MAPK12	21960	chr22:50696730:-	ONLY_REF_SPLICE	YES	85	59	0.31	0.4	0.2969	0.1663	LOCAL_REARRANGEMENT:-:[458],TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6,MAPK12->Oncogene{Bushman},chr22:50683879-50700254:-,mitogen-activated_protein_kinase_12	SNUC2A_LARGE_INTESTINE	0.31	0.4	0.4632	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	TUBGCP6--MAPK12	19	20	TUBGCP6	16372	chr22:50656708:-	MAPK12	21960	chr22:50696730:-	INCL_NON_REF_SPLICE	YES	39	59	0.5	0.4	0.2257	0.2376	LOCAL_REARRANGEMENT:-:[458],TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6,MAPK12->Oncogene{Bushman},chr22:50683879-50700254:-,mitogen-activated_protein_kinase_12	SNUC2A_LARGE_INTESTINE	0.4	0.5	0.4633	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	PTMA--PTMS	19	0	PTMA	6054	chr2:232576687:+	PTMS	13973	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2257	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNUC2A_LARGE_INTESTINE	1	1	0.2257	TRUE	0	0	0	16	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-392P7.6--APOLD1	14	0	RP11-392P7.6	1078	chr12:13080737:+	APOLD1	25182	chr12:12966259:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1663	0	LOCAL_REARRANGEMENT:+:[97751],RP11-392P7.6->chr12:13080660-13137579:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	SNUC2A_LARGE_INTESTINE	1	1	0.1663	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	DOCK3--MAPKAPK3	8	0	DOCK3	2144	chr3:50816189:+	MAPKAPK3	62773	chr3:50677797:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.095	0	LOCAL_REARRANGEMENT:+:[25952],DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3,MAPKAPK3->chr3:50648951-50686720:+,mitogen-activated_protein_kinase-activated_protein_kinase_3	SNUC2A_LARGE_INTESTINE	1	1	0.095	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	DIS3L2--AC009950.2	6	0	DIS3L2	1521	chr2:232826475:+	AC009950.2	40263	chr2:231004784:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0713	0	DIS3L2->DIS3_like_3'-5'_exoribonuclease_2,chr2:232825955-233209060:+,AC009950.2->chr2:230990026-231038939:+	SNUC2A_LARGE_INTESTINE	1	1	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	5	0	ATXN3	12473	chr14:92537371:-	AR	23313	chrX:66765159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	5	0	ATXN3	12476	chr14:92537368:-	AR	23313	chrX:66765159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	5	0	ATXN3	12479	chr14:92537365:-	AR	23313	chrX:66765159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-392P7.6--APOLD1	3	6	RP11-392P7.6	1089	chr12:13080748:+	APOLD1	24118	chr12:12965195:+	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0356	0.0713	LOCAL_REARRANGEMENT:+:[97751],RP11-392P7.6->chr12:13080660-13137579:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	SNUC2A_LARGE_INTESTINE	0.9	1	0.1069	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-392P7.6--APOLD1	2	9	RP11-392P7.6	3392	chr12:13100172:+	APOLD1	24118	chr12:12965195:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0238	0.1069	LOCAL_REARRANGEMENT:+:[97751],RP11-392P7.6->chr12:13080660-13137579:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	SNUC2A_LARGE_INTESTINE	0.92	1	0.1307	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	4	0	ATXN3	12465	chr14:92537379:-	AR	23317	chrX:66765163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	4	0	ATXN3	12465	chr14:92537379:-	AR	23320	chrX:66765166:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	4	0	ATXN3	12465	chr14:92537379:-	AR	23314	chrX:66765160:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	PTMA--PTMS	4	0	PTMA	6054	chr2:232576687:+	PTMS	13976	chr12:6879341:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNUC2A_LARGE_INTESTINE	1	1	0.0475	TRUE	0	0	0	16	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	3	0	ATXN3	12465	chr14:92537379:-	AR	23323	chrX:66765169:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	3	0	ATXN3	12488	chr14:92537356:-	AR	23313	chrX:66765159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	3	0	ATXN3	12485	chr14:92537359:-	AR	23313	chrX:66765159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	3	0	ATXN3	12482	chr14:92537362:-	AR	23313	chrX:66765159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	CDK2AP1--KRT8	3	0	CDK2AP1	6608	chr12:123749765:-	KRT8	19376	chr12:53295717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1,KRT8->chr12:53290977-53343738:-,keratin_8	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	MEF2A--OGT	3	0	MEF2A	4341	chr15:100138716:+	OGT	30612	chrX:70764417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	CNOT2--LYZ	2	0	CNOT2	3472	chr12:70672054:+	LYZ	36454	chr12:69743888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,LYZ->chr12:69742121-69748014:+,lysozyme	SNUC2A_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP5-1158E12.3--HSPBAP1	2	0	RP5-1158E12.3	3112	chrX:45708809:-	HSPBAP1	19624	chr3:122459960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	RP5-1158E12.3->chrX:45707328-45710920:-,HSPBAP1->HSPB1_associated_protein_1,Oncogene{Bushman},chr3:122458846-122512671:-	SNUC2A_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	SLCO4A1--CABLES2	2	0	SLCO4A1	1109	chr20:61273905:+	CABLES2	19429	chr20:60971648:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,CABLES2->Cdk5_and_Abl_enzyme_substrate_2,chr20:60963688-60982341:-	SNUC2A_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	2	0	TRUE	ACH-000967
NCIH1092_LUNG	TRIT1--PPIE	2664	2173	TRIT1	1194	chr1:40348990:-	PPIE	34056	chr1:40229361:+	ONLY_REF_SPLICE	YES	920	377	0.84	0.93	25.8261	21.0661	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.84	0.93	46.8922	TRUE	0	0	0	4	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	2032	3203	TRIT1	1194	chr1:40348990:-	PPIE	32921	chr1:40228189:+	ONLY_REF_SPLICE	YES	920	181	0.85	0.97	19.6992	31.0515	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.85	0.97	50.7507	TRUE	0	0	0	3	0	TRUE	ACH-000514
NCIH1092_LUNG	RLF--MYCL	1902	626	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	50	187	0.98	0.93	18.4389	6.0688	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1092_LUNG	0.93	0.98	24.5077	TRUE	0	0	0	10	0	TRUE	ACH-000514
NCIH1092_LUNG	RLF--MYCL	1041	986	RLF	1264	chr1:40627308:+	MYCL	18060	chr1:40367115:-	ONLY_REF_SPLICE	YES	50	33	0.98	0.98	10.092	9.5588	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1092_LUNG	0.98	0.98	19.6508	TRUE	0	0	0	6	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	59	3231	TRIT1	1194	chr1:40348990:-	PPIE	32722	chr1:40227990:+	ONLY_REF_SPLICE	YES	920	143	0.78	0.96	0.572	31.3229	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.78	0.96	31.8949	TRUE	0	0	0	3	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	5	3239	TRIT1	5744	chr1:40318403:-	PPIE	29796	chr1:40218582:+	ONLY_REF_SPLICE	YES	712	955	0.82	0.77	0.0485	31.4005	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.77	0.82	31.449	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	3	3235	TRIT1	1194	chr1:40348990:-	PPIE	31526	chr1:40226794:+	INCL_NON_REF_SPLICE	NO	920	135	0.78	0.96	0.0291	31.3617	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.78	0.96	31.3908	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	1	3237	TRIT1	1194	chr1:40348990:-	PPIE	29796	chr1:40218582:+	ONLY_REF_SPLICE	NO	920	955	0.78	0.77	0.0097	31.3811	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.77	0.78	31.3908	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	239	2263	TRIT1	1194	chr1:40348990:-	PPIE	34018	chr1:40229323:+	INCL_NON_REF_SPLICE	YES	920	453	0.73	0.85	2.317	21.9386	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.73	0.85	24.2556	TRUE	0	0	0	4	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	1	3204	TRIT1	8111	chr1:40315795:-	PPIE	32921	chr1:40228189:+	ONLY_REF_SPLICE	YES	321	181	0.91	0.95	0.0097	31.0612	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.91	0.95	31.0709	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	1	3204	TRIT1	4505	chr1:40319642:-	PPIE	32921	chr1:40228189:+	ONLY_REF_SPLICE	YES	737	181	0.81	0.95	0.0097	31.0612	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.81	0.95	31.0709	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	19	2231	TRIT1	1194	chr1:40348990:-	PPIE	34037	chr1:40229342:+	INCL_NON_REF_SPLICE	YES	920	448	0.71	0.83	0.1842	21.6284	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.71	0.83	21.8126	TRUE	0	0	0	4	0	TRUE	ACH-000514
NCIH1092_LUNG	RLF--MYCL	7	616	RLF	1264	chr1:40627308:+	MYCL	20894	chr1:40363640:-	INCL_NON_REF_SPLICE	YES	50	186	0.93	0.77	0.0679	5.9718	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1092_LUNG	0.77	0.93	6.0397	TRUE	0	0	0	10	0	TRUE	ACH-000514
NCIH1092_LUNG	CBX5--DCD	101	37	CBX5	4174	chr12:54651298:-	DCD	21752	chr12:55042252:-	INCL_NON_REF_SPLICE	YES	443	0	0.24	1	0.9791	0.3587	CBX5->chr12:54624724-54673886:-,chromobox_5,DCD->chr12:55038375-55042277:-,dermcidin	NCIH1092_LUNG	0.24	1	1.3378	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	SMIM11--AP000318.2	100	27	SMIM11	2789	chr21:35751815:+	AP000318.2	19707	chr21:35697036:+	ONLY_REF_SPLICE	YES	237	0	0.35	1	0.9694	0.2618	LOCAL_REARRANGEMENT:+:[50445],SMIM11->chr21:35747779-35780164:+,AP000318.2->chr21:35577356-35697334:+	NCIH1092_LUNG	0.35	1	1.2312	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	NUP210--WNT7A	79	47	NUP210	1250	chr3:13461560:-	WNT7A	48508	chr3:13916670:-	ONLY_REF_SPLICE	YES	175	0	0.42	1	0.7659	0.4556	{Klijn_CCL:Lung=1},NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa,WNT7A->Wnt_family_member_7A,chr3:13857755-13921618:-	NCIH1092_LUNG	0.42	1	1.2215	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TP73--PACSIN2	76	47	TP73	2970	chr1:3599744:+	PACSIN2	29406	chr22:43308163:-	ONLY_REF_SPLICE	YES	0	52	1	0.7	0.7368	0.4556	{Klijn_CCL:Lung=1},TP73->Oncogene{Bushman},chr1:3569084-3652765:+,tumor_protein_p73,PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2	NCIH1092_LUNG	0.7	1	1.1924	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	CENPT--DPEP3	31	9	CENPT	9030	chr16:67866131:-	DPEP3	20144	chr16:68010678:-	ONLY_REF_SPLICE	YES	169	0	0.19	1	0.3005	0.0873	{Klijn_CCL:Lung=1},CENPT->centromere_protein_T,chr16:67862060-67881714:-,DPEP3->chr16:68009566-68014732:-,dipeptidase_3	NCIH1092_LUNG	0.19	1	0.3878	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	NR2C2--ANKRD28	26	20	NR2C2	21542	chr3:15080734:+	ANKRD28	34856	chr3:15807819:-	ONLY_REF_SPLICE	YES	58	17	0.44	0.73	0.2521	0.1939	NR2C2->chr3:14989091-15095107:+,nuclear_receptor_subfamily_2_group_C_member_2,ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-	NCIH1092_LUNG	0.44	0.73	0.446	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TP73--PACSIN2	12	16	TP73	2970	chr1:3599744:+	PACSIN2	31682	chr22:43289619:-	ONLY_REF_SPLICE	YES	0	105	1	0.21	0.1163	0.1551	{Klijn_CCL:Lung=1},TP73->Oncogene{Bushman},chr1:3569084-3652765:+,tumor_protein_p73,PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2	NCIH1092_LUNG	0.21	1	0.2714	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	CTD-2314B22.3--RP11-536C10.19	15	2	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	11	0	0.61	1	0.1454	0.0194	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	NCIH1092_LUNG	0.61	1	0.1648	TRUE	0	2	0	9	2	TRUE	ACH-000514
NCIH1092_LUNG	SAMD1--NCL	8	0	SAMD1	2749	chr19:14200100:-	NCL	12087	chr2:232326374:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0	SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1,NCL->chr2:232318242-232348352:-,nucleolin	NCIH1092_LUNG	1	1	0.0776	TRUE	0	0	0	3	0	TRUE	ACH-000514
NCIH1092_LUNG	FNBP4--RAG1	4	5	FNBP4	11285	chr11:47755577:-	RAG1	28374	chr11:36541682:+	ONLY_REF_SPLICE	YES	87	0	0.09	1	0.0388	0.0485	FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,RAG1->chr11:36532259-36614706:+,recombination_activating_gene_1	NCIH1092_LUNG	0.09	1	0.0873	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	FNBP4--RAG1	4	3	FNBP4	11285	chr11:47755577:-	RAG1	35008	chr11:36594841:+	ONLY_REF_SPLICE	YES	87	7	0.07	0.5	0.0388	0.0291	FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,RAG1->chr11:36532259-36614706:+,recombination_activating_gene_1	NCIH1092_LUNG	0.07	0.5	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	SLC39A9--LINC00944	3	6	SLC39A9	3560	chr14:69890919:+	LINC00944	18312	chr12:127256798:-	INCL_NON_REF_SPLICE	YES	106	0	0.08	1	0.0291	0.0582	SLC39A9->chr14:69864732-69929105:+,solute_carrier_family_39_member_9,LINC00944->chr12:127214333-127256957:-,long_intergenic_non-protein_coding_RNA_944	NCIH1092_LUNG	0.08	1	0.0873	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	SAMD1--NCL	4	0	SAMD1	2749	chr19:14200100:-	NCL	12060	chr2:232326401:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1,NCL->chr2:232318242-232348352:-,nucleolin	NCIH1092_LUNG	1	1	0.0388	TRUE	0	0	0	3	0	TRUE	ACH-000514
NCIH1092_LUNG	MFSD2A--ZMPSTE24	3	0	MFSD2A	6799	chr1:40431686:+	ZMPSTE24	18397	chr1:40733458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	MFSD2A->chr1:40420802-40435638:+,major_facilitator_superfamily_domain_containing_2A,ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24	NCIH1092_LUNG	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	NUP210--WNT7A	1	6	NUP210	1250	chr3:13461560:-	WNT7A	50970	chr3:13896300:-	ONLY_REF_SPLICE	YES	175	34	0.04	0.17	0.0097	0.0582	{Klijn_CCL:Lung=1},NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa,WNT7A->Wnt_family_member_7A,chr3:13857755-13921618:-	NCIH1092_LUNG	0.04	0.17	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TP73--PACSIN2	2	2	TP73	1122	chr1:3569205:+	PACSIN2	29406	chr22:43308163:-	ONLY_REF_SPLICE	NO	0	52	1	0.07	0.0194	0.0194	{Klijn_CCL:Lung=1},TP73->Oncogene{Bushman},chr1:3569084-3652765:+,tumor_protein_p73,PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2	NCIH1092_LUNG	0.07	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	HP1BP3--EIF4G3	2	1	HP1BP3	1129	chr1:21113688:-	EIF4G3	28440	chr1:21415706:-	ONLY_REF_SPLICE	YES	41	14	0.07	0.18	0.0194	0.0097	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	NCIH1092_LUNG	0.07	0.18	0.0291	TRUE	0	2	0	6	0	TRUE	ACH-000514
NCIH1092_LUNG	AGBL4--RP11-567C20.3	1	4	AGBL4	2274	chr1:50317068:-	RP11-567C20.3	28162	chr1:50671980:-	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0097	0.0388	AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,RP11-567C20.3->chr1:50671756-50688799:-	NCIH1092_LUNG	0.29	1	0.0485	TRUE	0	1	0	2	1	TRUE	ACH-000514
NCIH1092_LUNG	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	NCIH1092_LUNG	1	1	0.0194	TRUE	1	3	0	10	0	TRUE	ACH-000514
NCIH1092_LUNG	FAM76B--SUPT16H	2	0	FAM76B	3786	chr11:95520788:-	SUPT16H	34611	chr14:21822699:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	FAM76B->chr11:95502106-95523573:-,family_with_sequence_similarity_76_member_B,SUPT16H->SPT16_homolog,_facilitates_chromatin_remodeling_subunit,chr14:21819631-21852425:-	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	FBXL5--RP11-484O2.1	2	0	FBXL5	16339	chr4:15613889:-	RP11-484O2.1	22958	chr4:15364147:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	FBXL5->F-box_and_leucine-rich_repeat_protein_5,chr4:15606162-15683302:-,RP11-484O2.1->chr4:15359765-15421656:-	NCIH1092_LUNG	1	1	0.0194	TRUE	1	6	0	5	2	TRUE	ACH-000514
NCIH1092_LUNG	FOXK2--TBCD	2	0	FOXK2	11869	chr17:80545148:+	TBCD	43065	chr17:80828100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	NCAM2--GPC5	2	0	NCAM2	1304	chr21:22370936:+	GPC5	45796	chr13:93518535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NCAM2->chr21:22370633-22915650:+,neural_cell_adhesion_molecule_2,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	PTGES2--SPTAN1	2	0	PTGES2	4764	chr9:130885981:-	SPTAN1	37461	chr9:131369883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	PTGES2->chr9:130882972-130890741:-,prostaglandin_E_synthase_2,SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	RP1-101K10.6--AL590867.1	2	0	RP1-101K10.6	1056	chr6:153304940:+	AL590867.1	8494	chr6:153667581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	RP1-101K10.6->chr6:153304885-153310358:+,AL590867.1->chr6:153552455-153668623:+	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	SEC14L1--PGS1	2	0	SEC14L1	11207	chr17:75139741:+	PGS1	47389	chr17:76410960:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	SEC14L1->SEC14_like_lipid_binding_1,chr17:75082798-75213179:+,PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TCFL5--CHMP1A	2	0	TCFL5	5786	chr20:61485368:-	CHMP1A	17527	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	TCFL5->chr20:61472467-61493115:-,transcription_factor_like_5,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	ZBED3--TTC3	2	0	ZBED3	1213	chr5:76382936:-	TTC3	31060	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	ZBED3->chr5:76367897-76383148:-,zinc_finger_BED-type_containing_3,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	FNBP4--RAG1	1	3	FNBP4	11285	chr11:47755577:-	RAG1	30548	chr11:36584935:+	ONLY_REF_SPLICE	YES	87	0	0.04	1	0.0097	0.0291	FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,RAG1->chr11:36532259-36614706:+,recombination_activating_gene_1	NCIH1092_LUNG	0.04	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000514
PANC0213_PANCREAS	WDR33--SAP130	165	34	WDR33	1176	chr2:128568586:-	SAP130	51360	chr2:128707982:-	ONLY_REF_SPLICE	YES	57	17	0.78	0.92	1.6066	0.3311	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	PANC0213_PANCREAS	0.78	0.92	1.9377	TRUE	0	0	0	2	0	TRUE	ACH-000031
PANC0213_PANCREAS	ANLN--EEPD1	99	28	ANLN	23717	chr7:36483471:+	EEPD1	35070	chr7:36320724:+	ONLY_REF_SPLICE	YES	175	6	0.42	0.95	0.964	0.2726	LOCAL_REARRANGEMENT:+:[88263],ANLN->Oncogene{Bushman},anillin_actin_binding_protein,chr7:36429415-36493400:+,EEPD1->chr7:36192758-36341152:+,endonuclease/exonuclease/phosphatase_family_domain_containing_1	PANC0213_PANCREAS	0.42	0.95	1.2366	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	WDR33--SAP130	16	34	WDR33	1176	chr2:128568586:-	SAP130	51363	chr2:128707979:-	INCL_NON_REF_SPLICE	YES	57	17	0.47	0.75	0.1558	0.3311	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	PANC0213_PANCREAS	0.47	0.75	0.4869	TRUE	0	0	0	2	0	TRUE	ACH-000031
PANC0213_PANCREAS	RGS12--HTT	16	4	RGS12	8553	chr4:3344780:+	HTT	67400	chr4:3174047:+	ONLY_REF_SPLICE	YES	6	22	0.77	0.48	0.1558	0.0389	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[49079],RGS12->chr4:3294755-3441640:+,regulator_of_G-protein_signaling_12,HTT->chr4:3076408-3245676:+,huntingtin	PANC0213_PANCREAS	0.48	0.77	0.1947	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	CHMP5--SLC24A2	11	8	CHMP5	2173	chr9:33266112:+	SLC24A2	14527	chr9:19622297:-	ONLY_REF_SPLICE	YES	156	0	0.11	1	0.1071	0.0779	CHMP5->charged_multivesicular_body_protein_5,chr9:33264940-33281977:+,SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2	PANC0213_PANCREAS	0.11	1	0.185	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	WDR33--SAP130	1	34	WDR33	1439	chr2:128568323:-	SAP130	51360	chr2:128707982:-	ONLY_REF_SPLICE	YES	63	17	0.36	0.67	0.0097	0.3311	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	PANC0213_PANCREAS	0.36	0.67	0.3408	TRUE	0	0	0	2	0	TRUE	ACH-000031
PANC0213_PANCREAS	RP11-133O22.6--CDKN2B-AS1	6	1	RP11-133O22.6	3486	chr9:33798366:-	CDKN2B-AS1	11941	chr9:22046750:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0584	0.0097	RP11-133O22.6->chr9:33785948-33818793:-,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	PANC0213_PANCREAS	1	1	0.0681	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	CHMP5--SLC24A2	4	8	CHMP5	3220	chr9:33267897:+	SLC24A2	14527	chr9:19622297:-	ONLY_REF_SPLICE	YES	130	0	0.08	1	0.0389	0.0779	CHMP5->charged_multivesicular_body_protein_5,chr9:33264940-33281977:+,SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2	PANC0213_PANCREAS	0.08	1	0.1168	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	AP000350.10--PI4KA	5	2	AP000350.10	4431	chr22:24219358:+	PI4KA	29130	chr22:21119981:-	ONLY_REF_SPLICE	YES	0	14	1	0.33	0.0487	0.0195	AP000350.10->chr22:24204375-24237410:+,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	PANC0213_PANCREAS	0.33	1	0.0682	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	IGF2R--FAM50A	3	0	IGF2R	1002	chr6:160390132:+	FAM50A	54148	chrX:153672551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,FAM50A->chrX:153672473-153679002:+,family_with_sequence_similarity_50_member_A	PANC0213_PANCREAS	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	CHMP5--SLC24A2	1	7	CHMP5	2173	chr9:33266112:+	SLC24A2	15566	chr9:19619690:-	ONLY_REF_SPLICE	YES	156	0	0.05	1	0.0097	0.0682	CHMP5->charged_multivesicular_body_protein_5,chr9:33264940-33281977:+,SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2	PANC0213_PANCREAS	0.05	1	0.0779	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	ADAMTS16--RPL37A	2	0	ADAMTS16	6309	chr5:5187921:+	RPL37A	38935	chr2:217443644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	ADAMTS16->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_16,chr5:5140443-5320417:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	PANC0213_PANCREAS	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	ADD1--FAM214B	2	0	ADD1	1168	chr4:2845751:+	FAM214B	38283	chr9:35108734:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	ADD1->adducin_1,chr4:2845584-2931803:+,FAM214B->chr9:35104109-35116338:-,family_with_sequence_similarity_214_member_B	PANC0213_PANCREAS	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	HMGB3P22--RAC1	2	0	HMGB3P22	1253	chr5:179106285:+	RAC1	12161	chr7:6439757:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	HMGB3P22->chr5:179106033-179121782:+,high_mobility_group_box_3_pseudogene_22,RAC1->ArcherDX_panel,FoundationOne_panel,chr7:6414154-6443608:+,ras-related_C3_botulinum_toxin_substrate_1_(rho_family,_small_GTP_binding_protein_Rac1)	PANC0213_PANCREAS	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	XRCC1--ZNF428	1	1	XRCC1	3206	chr19:44079062:-	ZNF428	17605	chr19:44118586:-	ONLY_REF_SPLICE	YES	36	3	0.05	0.4	0.0097	0.0097	LOCAL_REARRANGEMENT:-:[26746],XRCC1->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_1,chr19:44047192-44084625:-,ZNF428->chr19:44111371-44124026:-,zinc_finger_protein_428	PANC0213_PANCREAS	0.05	0.4	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000031
SLR24_KIDNEY	VTI1A--TCF7L2	13	4	VTI1A	6899	chr10:114224416:+	TCF7L2	30150	chr10:114900943:+	ONLY_REF_SPLICE	YES	17	6	0.5	0.74	0.1562	0.0481	Cosmic{samples=98,mutations=4,papers=1},GTEx&tcga_normals:1/3694=0.03%,VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2	SLR24_KIDNEY	0.5	0.74	0.2043	TRUE	0	1	0	1	1	TRUE	ACH-000272
SLR24_KIDNEY	MYADM--LDHA	3	0	MYADM	6339	chr19:54377615:+	LDHA	11593	chr11:18416112:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	MYADM->chr19:54369477-54379691:+,myeloid-associated_differentiation_marker,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	SLR24_KIDNEY	1	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000272
SLR24_KIDNEY	ACOX3--HSPA14	2	0	ACOX3	1076	chr4:8442375:-	HSPA14	30640	chr10:14890608:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	ACOX3->acyl-CoA_oxidase_3,_pristanoyl,chr4:8368009-8442450:-,HSPA14->chr10:14880163-14913740:+,heat_shock_protein_family_A_(Hsp70)_member_14	SLR24_KIDNEY	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000272
SLR24_KIDNEY	EXT2--HTATIP2	2	0	EXT2	12956	chr11:44151688:+	HTATIP2	30240	chr11:20398126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2,HTATIP2->HIV-1_Tat_interactive_protein_2,Oncogene{Bushman},chr11:20385231-20405329:+	SLR24_KIDNEY	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000272
SLR24_KIDNEY	MATR3--UBE2D2	2	0	MATR3	3802	chr5:138614097:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	SLR24_KIDNEY	1	1	0.024	TRUE	0	1	0	2	1	TRUE	ACH-000272
SLR24_KIDNEY	RCC1--MIPEP	2	0	RCC1	2175	chr1:28834672:+	MIPEP	36804	chr13:24380208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MIPEP->chr13:24304328-24463558:-,mitochondrial_intermediate_peptidase	SLR24_KIDNEY	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000272
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--ITGAL	2134	5	RP11-1143G9.4	1649	chr12:69747357:-	ITGAL	31208	chr16:30534198:+	INCL_NON_REF_SPLICE	YES	26	442	0.99	0.83	27.2218	0.0638	RP11-1143G9.4->chr12:69747273-69748005:-,ITGAL->chr16:30483979-30534506:+,integrin_subunit_alpha_L	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.99	27.2856	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU2--RB1	339	247	DLEU2	1419	chr13:50699438:-	RB1	33995	chr13:49027129:+	ONLY_REF_SPLICE	YES	0	1	1	1	4.3244	3.1508	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	7.4752	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU1--LPAR6	62	55	DLEU1	2024	chr13:50657330:+	LPAR6	55359	chr13:48996926:-	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.7909	0.7016	DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding),LPAR6->chr13:48963707-49018840:-,lysophosphatidic_acid_receptor_6	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.4925	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU1--LPAR6	47	44	DLEU1	1387	chr13:50656693:+	LPAR6	55359	chr13:48996926:-	ONLY_REF_SPLICE	YES	3	1	0.97	0.99	0.5995	0.5613	DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding),LPAR6->chr13:48963707-49018840:-,lysophosphatidic_acid_receptor_6	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.99	1.1608	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	48	26	KMT2A	18437	chr11:118355690:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	3	1	0.96	0.99	0.6123	0.3317	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.99	0.944	TRUE	0	0	0	4	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU1--LPAR6	7	57	DLEU1	2024	chr13:50657330:+	LPAR6	54232	chr13:48998255:-	ONLY_REF_SPLICE	YES	0	1	1	0.98	0.0893	0.7271	DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding),LPAR6->chr13:48963707-49018840:-,lysophosphatidic_acid_receptor_6	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.8164	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	10	11	KMT2A	17776	chr11:118355029:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	10	1	0.68	0.95	0.1276	0.1403	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.95	0.2679	TRUE	0	0	0	4	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU1--LPAR6	1	17	DLEU1	2024	chr13:50657330:+	LPAR6	56503	chr13:48991456:-	ONLY_REF_SPLICE	YES	0	30	1	0.38	0.0128	0.2169	DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding),LPAR6->chr13:48963707-49018840:-,lysophosphatidic_acid_receptor_6	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.2297	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR4--CEP19	4	3	PLSCR4	1220	chr3:145968747:-	CEP19	18348	chr3:196435598:-	ONLY_REF_SPLICE	YES	0	25	1	0.22	0.051	0.0383	PLSCR4->chr3:145910126-145968966:-,phospholipid_scramblase_4,CEP19->centrosomal_protein_19,chr3:196433148-196439164:-	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LMNA--SIAE	4	0	LMNA	15311	chr1:156104737:+	SIAE	32446	chr11:124524604:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0	LMNA->chr1:156052364-156109880:+,lamin_A/C,SIAE->chr11:124503009-124565603:-,sialic_acid_acetylesterase	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.051	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR4--CEP19	3	3	PLSCR4	1220	chr3:145968747:-	CEP19	18351	chr3:196435595:-	INCL_NON_REF_SPLICE	YES	0	24	1	0.2	0.0383	0.0383	PLSCR4->chr3:145910126-145968966:-,phospholipid_scramblase_4,CEP19->centrosomal_protein_19,chr3:196433148-196439164:-	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.0766	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU1--LPAR6	2	0	DLEU1	2024	chr13:50657330:+	LPAR6	65560	chr13:48963948:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding),LPAR6->chr13:48963707-49018840:-,lysophosphatidic_acid_receptor_6	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-001129
HS742T_FIBROBLAST	COL1A1--SPARC	8	0	COL1A1	2564	chr17:48277211:-	SPARC	29508	chr5:151051220:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1022	0	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS742T_FIBROBLAST	1	1	0.1022	TRUE	0	0	0	3	0	TRUE	ACH-000230
HS742T_FIBROBLAST	RP11-334E6.12--MT2A	5	11	RP11-334E6.12	2039	chr11:119289699:+	MT2A	5557	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	242	3	0.06	0.84	0.0639	0.1405	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS742T_FIBROBLAST	0.06	0.84	0.2044	TRUE	0	0	0	7	0	TRUE	ACH-000230
HS742T_FIBROBLAST	CTB-113P19.1--FTL	3	3	CTB-113P19.1	4733	chr5:151066482:+	FTL	9963	chr19:49468580:+	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0383	0.0383	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	HS742T_FIBROBLAST	0.67	1	0.0766	TRUE	0	2	0	13	2	TRUE	ACH-000230
HS683_CENTRAL_NERVOUS_SYSTEM	CD63--TGFBI	116	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1096	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	1.1096	TRUE	0	0	0	14	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	DCAF8--NCKAP1	78	27	DCAF8	8832	chr1:160231075:-	NCKAP1	51743	chr2:183806891:-	ONLY_REF_SPLICE	YES	92	203	0.53	0.34	0.7461	0.2583	DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.34	0.53	1.0044	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	HDAC2--AK9	45	9	HDAC2	13064	chr6:114270143:-	AK9	36618	chr6:109983866:-	ONLY_REF_SPLICE	YES	297	0	0.15	1	0.4305	0.0861	HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2,AK9->adenylate_kinase_9,chr6:109814059-110012420:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.5166	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	DCAF8--NCKAP1	43	4	DCAF8	7668	chr1:160232239:-	NCKAP1	51743	chr2:183806891:-	ONLY_REF_SPLICE	YES	9	203	0.84	0.19	0.4113	0.0383	DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.19	0.84	0.4496	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	DCAF8--NCKAP1	5	15	DCAF8	8000	chr1:160231907:-	NCKAP1	51743	chr2:183806891:-	ONLY_REF_SPLICE	YES	92	203	0.18	0.09	0.0478	0.1435	DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.09	0.18	0.1913	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	PSMB8--MT2A	4	0	PSMB8	2684	chr6:32810797:-	MT2A	8371	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	PSMB8->chr6:32808494-32812480:-,proteasome_subunit_beta_8,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0383	TRUE	0	0	0	3	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	HMGA2--ZCCHC6	3	0	HMGA2	5315	chr12:66232349:+	ZCCHC6	54683	chr9:88903659:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,ZCCHC6->chr9:88902648-88969369:-,zinc_finger_CCHC-type_containing_6	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	JUN--MT2A	3	0	JUN	2308	chr1:59248478:-	MT2A	7705	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	JUN->ArcherDX_panel,FoundationOne_panel,Jun_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr1:59246465-59249785:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0287	TRUE	0	0	0	6	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RND3--TMEM87B	3	0	RND3	7816	chr2:151328141:-	TMEM87B	18680	chr2:112832489:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	{Klijn_CCL:Brain=1},RND3->Rho_family_GTPase_3,chr2:151324709-151395525:-,TMEM87B->chr2:112812800-112876895:+,transmembrane_protein_87B	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RPTOR--MATR3	3	0	RPTOR	19312	chr17:78831700:+	MATR3	71942	chr5:138657587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,MATR3->chr5:138609441-138667360:+,matrin_3	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MLTK--RP11-511B23.2	2	2	MLTK	16472	chr2:174081978:+	RP11-511B23.2	45631	chr12:93398374:-	ONLY_REF_SPLICE	YES	77	0	0.05	1	0.0191	0.0191	MLTK->chr2:173940163-174132738:+,RP11-511B23.2->chr12:93397191-93609455:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0382	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	ATP11B--PIK3CA	2	0	ATP11B	34086	chr3:182631782:+	PIK3CA	45558	chr3:178916538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	ATP11B->ATPase_phospholipid_transporting_11B_(putative),chr3:182511288-182639423:+,PIK3CA->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr3:178865902-178957881:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_alpha	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MED11--XPOT	2	0	MED11	1147	chr17:4634869:+	XPOT	8477	chr12:64803742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	MED11->chr17:4634723-4636905:+,mediator_complex_subunit_11,XPOT->chr12:64798130-64844907:+,exportin_for_tRNA	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000067
CAKI1_KIDNEY	DCBLD2--PCGF3	101	75	DCBLD2	19623	chr3:98526925:-	PCGF3	32175	chr4:724419:+	ONLY_REF_SPLICE	YES	664	52	0.21	0.77	1.2538	0.931	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,PCGF3->chr4:699537-764428:+,polycomb_group_ring_finger_3	CAKI1_KIDNEY	0.21	0.77	2.1848	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	SPP1--S100A6	4	0	SPP1	6794	chr4:88903712:+	S100A6	10895	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	CAKI1_KIDNEY	1	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	FBXO17--PPA2	2	0	FBXO17	1325	chr19:39466226:-	PPA2	15700	chr4:106377902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	FBXO17->F-box_protein_17,chr19:39432044-39466550:-,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	CAKI1_KIDNEY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	FN1--MGST1	2	0	FN1	14797	chr2:216279560:-	MGST1	61357	chr12:16510539:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1	CAKI1_KIDNEY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	KPNA6--PGS1	2	0	KPNA6	1097	chr1:32573735:+	PGS1	34436	chr17:76411033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6,PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1	CAKI1_KIDNEY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	NCK2--ZNF274	2	0	NCK2	5567	chr2:106471745:+	ZNF274	16501	chr19:58698314:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	CAKI1_KIDNEY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	KDM2B--MORN3	1	2	KDM2B	5340	chr12:122012452:-	MORN3	40234	chr12:122097254:-	ONLY_REF_SPLICE	YES	28	6	0.1	0.33	0.0124	0.0248	LOCAL_REARRANGEMENT:-:[70104],KDM2B->Oncogene{Bushman},chr12:121866900-122018920:-,lysine_demethylase_2B,MORN3->MORN_repeat_containing_3,chr12:122089024-122110537:-	CAKI1_KIDNEY	0.1	0.33	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	HOXB3--ZADH2	1	1	HOXB3	1433	chr17:46681842:-	ZADH2	23961	chr18:72914295:-	ONLY_REF_SPLICE	YES	2	15	0.5	0.12	0.0124	0.0124	HOXB3->chr17:46626232-46682274:-,homeobox_B3,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	CAKI1_KIDNEY	0.12	0.5	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAMA1_BREAST	EHMT1--COL5A1	177	90	EHMT1	8473	chr9:140638542:+	COL5A1	67070	chr9:137642388:+	ONLY_REF_SPLICE	YES	123	83	0.68	0.76	1.4304	0.7273	{Klijn_CCL:Breast=1},EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1	CAMA1_BREAST	0.68	0.76	2.1577	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	XRRA1--CARNS1	93	29	XRRA1	13732	chr11:74617284:-	CARNS1	31444	chr11:67182839:+	ONLY_REF_SPLICE	YES	88	2	0.58	0.98	0.7515	0.2344	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	CAMA1_BREAST	0.58	0.98	0.9859	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	CHKA--PPFIA1	84	27	CHKA	13706	chr11:67829420:-	PPFIA1	57695	chr11:70228194:+	ONLY_REF_SPLICE	YES	67	214	0.62	0.34	0.6788	0.2182	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	CAMA1_BREAST	0.34	0.62	0.897	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	ST7--PRKAG2	63	20	ST7	1454	chr7:116593745:+	PRKAG2	48598	chr7:151372723:-	ONLY_REF_SPLICE	YES	11	0	0.88	1	0.5091	0.1616	{Klijn_CCL:Breast=1},ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2	CAMA1_BREAST	0.88	1	0.6707	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	STX18-AS1--NOD2	41	16	STX18-AS1	2665	chr4:4546634:+	NOD2	33716	chr16:50765658:+	ONLY_REF_SPLICE	YES	3	0	0.95	1	0.3313	0.1293	STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,NOD2->chr16:50727514-50766988:+,nucleotide_binding_oligomerization_domain_containing_2	CAMA1_BREAST	0.95	1	0.4606	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	XRRA1--CARNS1	37	17	XRRA1	13732	chr11:74617284:-	CARNS1	35563	chr11:67186958:+	ONLY_REF_SPLICE	YES	88	21	0.38	0.72	0.299	0.1374	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	CAMA1_BREAST	0.38	0.72	0.4364	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	ZNF644--RP4-601K24.1	30	5	ZNF644	1283	chr1:91487547:-	RP4-601K24.1	23375	chr1:83462398:+	ONLY_REF_SPLICE	YES	26	2	0.57	0.95	0.2424	0.0404	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,RP4-601K24.1->chr1:83368866-83632498:+	CAMA1_BREAST	0.57	0.95	0.2828	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	PPP2R1A--CTD-2616J11.16	26	8	PPP2R1A	9079	chr19:52716363:+	CTD-2616J11.16	20605	chr19:51844320:+	ONLY_REF_SPLICE	YES	468	0	0.07	1	0.2101	0.0646	PPP2R1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:52693292-52730687:+,protein_phosphatase_2_regulatory_subunit_A,_alpha,CTD-2616J11.16->chr19:51843949-51847371:+	CAMA1_BREAST	0.07	1	0.2747	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	CPEB3--IDE	18	3	CPEB3	1162	chr10:94050683:-	IDE	54782	chr10:94214296:-	ONLY_REF_SPLICE	YES	3	39	0.88	0.35	0.1455	0.0242	CPEB3->chr10:93806449-94050844:-,cytoplasmic_polyadenylation_element_binding_protein_3,IDE->chr10:94211441-94333833:-,insulin_degrading_enzyme	CAMA1_BREAST	0.35	0.88	0.1697	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	RP11-147I3.1--ZMAT4	9	6	RP11-147I3.1	1692	chr11:74588022:+	ZMAT4	21831	chr8:40389757:-	ONLY_REF_SPLICE	YES	2	2	0.88	0.88	0.0727	0.0485	RP11-147I3.1->chr11:74587331-74631067:+,ZMAT4->chr8:40388109-40755352:-,zinc_finger_matrin-type_4	CAMA1_BREAST	0.88	0.88	0.1212	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	CHKA--PPFIA1	2	28	CHKA	14059	chr11:67829067:-	PPFIA1	57695	chr11:70228194:+	ONLY_REF_SPLICE	NO	87	214	0.26	0.12	0.0162	0.2263	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	CAMA1_BREAST	0.12	0.26	0.2425	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	TPD52--WDR3	7	4	TPD52	6214	chr8:81083660:-	WDR3	30590	chr1:118475911:+	ONLY_REF_SPLICE	YES	204	61	0.05	0.15	0.0566	0.0323	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,WDR3->WD_repeat_domain_3,chr1:118472343-118509165:+	CAMA1_BREAST	0.05	0.15	0.0889	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	XRRA1--CARNS1	2	19	XRRA1	13732	chr11:74617284:-	CARNS1	34507	chr11:67185902:+	ONLY_REF_SPLICE	YES	88	17	0.19	0.55	0.0162	0.1535	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	CAMA1_BREAST	0.19	0.55	0.1697	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	XRRA1--CARNS1	1	20	XRRA1	13732	chr11:74617284:-	CARNS1	33483	chr11:67184878:+	ONLY_REF_SPLICE	YES	88	17	0.19	0.55	0.0081	0.1616	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	CAMA1_BREAST	0.19	0.55	0.1697	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	XRRA1--CARNS1	1	18	XRRA1	13732	chr11:74617284:-	CARNS1	34832	chr11:67186227:+	ONLY_REF_SPLICE	NO	88	26	0.18	0.42	0.0081	0.1455	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	CAMA1_BREAST	0.18	0.42	0.1536	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	CYCS--OSBPL3	5	0	CYCS	1162	chr7:25164819:-	OSBPL3	12948	chr7:24932240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	CYCS->chr7:25159710-25164980:-,cytochrome_c,_somatic,OSBPL3->Oncogene{Bushman},chr7:24836158-25021253:-,oxysterol_binding_protein_like_3	CAMA1_BREAST	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	PRKAG2--ST7	4	1	PRKAG2	1619	chr7:151573592:-	ST7	40759	chr7:116739816:+	ONLY_REF_SPLICE	YES	0	11	1	0.31	0.0323	0.0081	PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	CAMA1_BREAST	0.31	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	RP11-206M11.7--TM4SF4	4	0	RP11-206M11.7	1401	chr3:149002969:+	TM4SF4	8491	chr3:149205406:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	RP11-206M11.7->chr3:149002569-149051440:+,TM4SF4->chr3:149191761-149221068:+,transmembrane_4_L_six_family_member_4	CAMA1_BREAST	1	1	0.0323	TRUE	0	5	0	1	2	TRUE	ACH-000783
CAMA1_BREAST	RP4-735C1.4--AHCYL1	3	0	RP4-735C1.4	1249	chr1:110268690:+	AHCYL1	10617	chr1:110551656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RP4-735C1.4->chr1:110268442-110317874:+,AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+	CAMA1_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	ZNF644--RP4-601K24.1	1	5	ZNF644	1283	chr1:91487547:-	RP4-601K24.1	21088	chr1:83418355:+	ONLY_REF_SPLICE	YES	26	1	0.19	0.86	0.0081	0.0404	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,RP4-601K24.1->chr1:83368866-83632498:+	CAMA1_BREAST	0.19	0.86	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	ZNF644--RP4-601K24.1	1	5	ZNF644	1584	chr1:91487246:-	RP4-601K24.1	21088	chr1:83418355:+	ONLY_REF_SPLICE	YES	36	1	0.14	0.86	0.0081	0.0404	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,RP4-601K24.1->chr1:83368866-83632498:+	CAMA1_BREAST	0.14	0.86	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	ZNF644--RP4-601K24.1	1	5	ZNF644	1584	chr1:91487246:-	RP4-601K24.1	23375	chr1:83462398:+	ONLY_REF_SPLICE	NO	36	2	0.14	0.75	0.0081	0.0404	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,RP4-601K24.1->chr1:83368866-83632498:+	CAMA1_BREAST	0.14	0.75	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	DANCR--DCUN1D4	2	0	DANCR	2809	chr4:53580405:+	DCUN1D4	12681	chr4:52729603:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4	CAMA1_BREAST	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	ZNF644--RP4-601K24.1	1	2	ZNF644	1283	chr1:91487547:-	RP4-601K24.1	25250	chr1:83541824:+	ONLY_REF_SPLICE	NO	26	8	0.1	0.27	0.0081	0.0162	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,RP4-601K24.1->chr1:83368866-83632498:+	CAMA1_BREAST	0.1	0.27	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000783
CORL105_LUNG	NPLOC4--PDE6G	103	19	NPLOC4	4980	chr17:79589192:-	PDE6G	38860	chr17:79618715:-	ONLY_REF_SPLICE	YES	107	1	0.53	0.99	0.9386	0.1731	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	CORL105_LUNG	0.53	0.99	1.1117	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	CHKA--SUV420H1	26	17	CHKA	5944	chr11:67848871:-	SUV420H1	21585	chr11:67957619:-	ONLY_REF_SPLICE	YES	77	63	0.36	0.41	0.2369	0.1549	LOCAL_REARRANGEMENT:-:[33419],CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,SUV420H1->chr11:67922330-67981295:-	CORL105_LUNG	0.36	0.41	0.3918	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	EVC--STK32B	22	4	EVC	5886	chr4:5735162:+	STK32B	43916	chr4:5399934:+	ONLY_REF_SPLICE	YES	5	1	0.84	0.96	0.2005	0.0365	EVC->EvC_ciliary_complex_subunit_1,chr4:5712924-5830772:+,STK32B->chr4:5053169-5502725:+,serine/threonine_kinase_32B	CORL105_LUNG	0.84	0.96	0.237	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	CTC-338M12.9--KMT2C	12	26	CTC-338M12.9	2428	chr5:180710532:+	KMT2C	13003	chr7:151970952:-	INCL_NON_REF_SPLICE	YES	0	8	1	0.83	0.1094	0.2369	CTC-338M12.9->chr5:180708376-180710653:+,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	CORL105_LUNG	0.83	1	0.3463	TRUE	0	0	0	3	0	TRUE	ACH-000161
CORL105_LUNG	CLIP2--LAT2	16	5	CLIP2	4005	chr7:73753334:+	LAT2	30188	chr7:73629152:+	ONLY_REF_SPLICE	YES	12	1	0.64	0.95	0.1458	0.0456	LOCAL_REARRANGEMENT:+:[59644],CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+,LAT2->chr7:73613982-73644161:+,linker_for_activation_of_T-cells_family_member_2	CORL105_LUNG	0.64	0.95	0.1914	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	EREG--BTC	16	4	EREG	1233	chr4:75231092:+	BTC	17916	chr4:75673359:-	ONLY_REF_SPLICE	YES	136	33	0.13	0.38	0.1458	0.0365	PROTCLUST,EREG->chr4:75230860-75254468:+,epiregulin,BTC->betacellulin,chr4:75669969-75719896:-	CORL105_LUNG	0.13	0.38	0.1823	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	CTC-338M12.9--KMT2C	9	30	CTC-338M12.9	2428	chr5:180710532:+	KMT2C	12966	chr7:151970989:-	INCL_NON_REF_SPLICE	YES	0	11	1	0.78	0.082	0.2734	CTC-338M12.9->chr5:180708376-180710653:+,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	CORL105_LUNG	0.78	1	0.3554	TRUE	0	0	0	3	0	TRUE	ACH-000161
CORL105_LUNG	CTC-338M12.9--KMT2C	11	16	CTC-338M12.9	2408	chr5:180710512:+	KMT2C	13003	chr7:151970952:-	INCL_NON_REF_SPLICE	YES	0	8	1	0.77	0.1002	0.1458	CTC-338M12.9->chr5:180708376-180710653:+,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	CORL105_LUNG	0.77	1	0.246	TRUE	0	0	0	3	0	TRUE	ACH-000161
CORL105_LUNG	STK11--SBNO2	14	2	STK11	3716	chr19:1207202:+	SBNO2	22405	chr19:1154401:-	ONLY_REF_SPLICE	YES	0	10	1	0.62	0.1276	0.0182	LOCAL_INVERSION:+:-:[15124],STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	CORL105_LUNG	0.62	1	0.1458	TRUE	0	1	0	1	1	TRUE	ACH-000161
CORL105_LUNG	ACBD4--CTD-2020K17.1	11	2	ACBD4	6422	chr17:43216527:+	CTD-2020K17.1	16989	chr17:43268537:-	ONLY_REF_SPLICE	YES	17	1	0.43	0.93	0.1002	0.0182	LOCAL_INVERSION:+:-:[46750],ACBD4->acyl-CoA_binding_domain_containing_4,chr17:43209967-43221548:+,CTD-2020K17.1->chr17:43268298-43299589:-	CORL105_LUNG	0.43	0.93	0.1184	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	CUL5--ADAMTS9-AS1	7	8	CUL5	1640	chr11:107880098:+	ADAMTS9-AS1	26746	chr3:64547384:+	INCL_NON_REF_SPLICE	YES	15	0	0.5	1	0.0638	0.0729	CUL5->chr11:107879459-107978503:+,cullin_5,ADAMTS9-AS1->ADAMTS9_antisense_RNA_1,chr3:64547014-64573878:+	CORL105_LUNG	0.5	1	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	NPLOC4--PDE6G	4	19	NPLOC4	4980	chr17:79589192:-	PDE6G	37655	chr17:79620394:-	ONLY_REF_SPLICE	YES	107	0	0.18	1	0.0365	0.1731	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	CORL105_LUNG	0.18	1	0.2096	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	NPLOC4--PDE6G	4	19	NPLOC4	4980	chr17:79589192:-	PDE6G	37662	chr17:79620387:-	INCL_NON_REF_SPLICE	YES	107	0	0.18	1	0.0365	0.1731	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	CORL105_LUNG	0.18	1	0.2096	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	ZBTB8OS--YARS	7	4	ZBTB8OS	1471	chr1:33116034:-	YARS	22143	chr1:33252048:-	ONLY_REF_SPLICE	YES	49	107	0.18	0.09	0.0638	0.0365	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	CORL105_LUNG	0.09	0.18	0.1003	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	CTC-338M12.9--KMT2C	4	10	CTC-338M12.9	2428	chr5:180710532:+	KMT2C	13091	chr7:151970864:-	INCL_NON_REF_SPLICE	YES	0	17	1	0.45	0.0365	0.0911	CTC-338M12.9->chr5:180708376-180710653:+,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	CORL105_LUNG	0.45	1	0.1276	TRUE	0	0	0	3	0	TRUE	ACH-000161
CORL105_LUNG	CUL5--ADAMTS9-AS1	3	3	CUL5	1640	chr11:107880098:+	ADAMTS9-AS1	32710	chr3:64568949:+	ONLY_REF_SPLICE	YES	15	5	0.29	0.55	0.0273	0.0273	CUL5->chr11:107879459-107978503:+,cullin_5,ADAMTS9-AS1->ADAMTS9_antisense_RNA_1,chr3:64547014-64573878:+	CORL105_LUNG	0.29	0.55	0.0546	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	SPTBN1--S100A6	3	0	SPTBN1	44780	chr2:54891664:+	S100A6	52441	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	GTEx&tcga_normals:2/3694=0.05%,SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	CORL105_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	SURF4--RPLP1	3	0	SURF4	7220	chr9:136229378:-	RPLP1	11318	chr15:69745167:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	SURF4->chr9:136228325-136242970:-,surfeit_4,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	CORL105_LUNG	1	1	0.0273	TRUE	0	0	0	4	0	TRUE	ACH-000161
CORL105_LUNG	ZBTB8OS--YARS	1	6	ZBTB8OS	6828	chr1:33093109:-	YARS	22143	chr1:33252048:-	ONLY_REF_SPLICE	NO	28	107	0.2	0.06	0.0091	0.0547	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	CORL105_LUNG	0.06	0.2	0.0638	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	CHKA--SUV420H1	2	0	CHKA	5944	chr11:67848871:-	SUV420H1	33739	chr11:67926638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	LOCAL_REARRANGEMENT:-:[33419],CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,SUV420H1->chr11:67922330-67981295:-	CORL105_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	CLIP2--LAT2	2	0	CLIP2	4005	chr7:73753334:+	LAT2	31313	chr7:73630277:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	LOCAL_REARRANGEMENT:+:[59644],CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+,LAT2->chr7:73613982-73644161:+,linker_for_activation_of_T-cells_family_member_2	CORL105_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	KPNB1--CDC27	2	0	KPNB1	11478	chr17:45742524:+	CDC27	47202	chr17:45209740:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1,CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-	CORL105_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	NPLOC4--PDE6G	1	4	NPLOC4	3867	chr17:79596751:-	PDE6G	38860	chr17:79618715:-	ONLY_REF_SPLICE	YES	70	1	0.07	0.83	0.0091	0.0365	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	CORL105_LUNG	0.07	0.83	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	RFX3--KDM4C	2	0	RFX3	8459	chr9:3330259:-	KDM4C	42311	chr9:6849507:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C	CORL105_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	SPR--DDB1	2	0	SPR	2245	chr2:73115733:+	DDB1	27340	chr11:61077890:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	SPR->chr2:73114489-73119287:+,sepiapterin_reductase_(7,8-dihydrobiopterin:NADP+_oxidoreductase),DDB1->chr11:61066923-61110068:-,damage_specific_DNA_binding_protein_1	CORL105_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	ZNF7--TOB1	2	0	ZNF7	3141	chr8:146054989:+	TOB1	22414	chr17:48941524:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,TOB1->chr17:48939584-48945339:-,transducer_of_ERBB2,_1	CORL105_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	DOK7--RGS12	1	2	DOK7	1246	chr4:3465278:+	RGS12	47573	chr4:3441182:+	ONLY_REF_SPLICE	NO	7	4	0.3	0.43	0.0091	0.0182	LOCAL_REARRANGEMENT:+:[23393],DOK7->chr4:3465033-3503200:+,docking_protein_7,RGS12->chr4:3294755-3441640:+,regulator_of_G-protein_signaling_12	CORL105_LUNG	0.3	0.43	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000161
TGBC11TKB_STOMACH	RAB3GAP1--ACMSD	30	6	RAB3GAP1	2297	chr2:135815656:+	ACMSD	45727	chr2:135659368:+	ONLY_REF_SPLICE	YES	18	0	0.67	1	0.528	0.1056	RAB3GAP1->RAB3_GTPase_activating_protein_catalytic_subunit_1,chr2:135809835-135933964:+,ACMSD->aminocarboxymuconate_semialdehyde_decarboxylase,chr2:135596117-135659604:+	TGBC11TKB_STOMACH	0.67	1	0.6336	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	RAI1--RP11-1035H13.3	4	0	RAI1	3231	chr17:17587017:+	RP11-1035H13.3	26004	chr16:18800440:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0704	0	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,RP11-1035H13.3->chr16:18799385-18812841:-	TGBC11TKB_STOMACH	1	1	0.0704	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	AUH--TGFBR1	3	0	AUH	3721	chr9:94118165:-	TGFBR1	21136	chr9:101891137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	AUH->AU_RNA_binding_protein/enoyl-CoA_hydratase,Oncogene{Bushman},chr9:93976097-94124195:-,TGFBR1->Oncogene{Bushman},chr9:101866320-101916474:+,transforming_growth_factor_beta_receptor_1	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	CTD-3138B18.5--GIT1	3	0	CTD-3138B18.5	1286	chr19:58789889:-	GIT1	14497	chr17:27905797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	CTD-3138B18.5->chr19:58768639-58790174:-,GIT1->GIT_ArfGAP_1,chr17:27900487-27921072:-	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	DPP3--ID1	3	0	DPP3	14856	chr11:66272162:+	ID1	20214	chr20:30193771:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3,ID1->chr20:30193086-30194318:+,inhibitor_of_DNA_binding_1,_HLH_protein	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	FAM168A--MDC1	3	0	FAM168A	14294	chr11:73113829:-	MDC1	29169	chr6:30673047:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,MDC1->chr6:30667584-30685666:-,mediator_of_DNA_damage_checkpoint_1	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	GLTSCR2--ARF1	3	0	GLTSCR2	4282	chr19:48254206:+	ARF1	19419	chr1:228285580:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	GOLGA4--DENR	3	0	GOLGA4	35559	chr3:37396678:+	DENR	44467	chr12:123247392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	GOLGA4->chr3:37284668-37408242:+,golgin_A4,DENR->Oncogene{Bushman},chr12:123237321-123255611:+,density-regulated_protein	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	HDAC3--C1orf115	3	0	HDAC3	6296	chr5:141007457:-	C1orf115	14119	chr1:220863725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	HDAC3->Oncogene{Bushman},chr5:141000443-141016437:-,histone_deacetylase_3,C1orf115->chr1:220863187-220872499:+,chromosome_1_open_reading_frame_115	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	HERC4--LSM6	3	0	HERC4	3466	chr10:69832640:-	LSM6	45943	chr4:147104064:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-,LSM6->LSM6_homolog,_U6_small_nuclear_RNA_and_mRNA_degradation_associated,chr4:147096837-147121152:+	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	MAML3--SLC7A5	3	0	MAML3	9994	chr4:140640529:-	SLC7A5	26249	chr16:87866576:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	SNAPC4--TPRN	3	0	SNAPC4	14086	chr9:139275192:-	TPRN	28537	chr9:140087143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	SNAPC4->chr9:139270029-139293249:-,small_nuclear_RNA_activating_complex_polypeptide_4,TPRN->chr9:140086069-140098645:-,taperin	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	SUOX--WDR82	3	0	SUOX	7042	chr12:56398332:+	WDR82	24653	chr3:52290003:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	SUOX->chr12:56390964-56400425:+,sulfite_oxidase,WDR82->Oncogene{Bushman},WD_repeat_domain_82,chr3:52288437-52322036:-	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	TTC39C--OSBPL1A	3	0	TTC39C	11238	chr18:21663045:+	OSBPL1A	54956	chr18:21761243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	LOCAL_INVERSION:+:-:[26434],TTC39C->chr18:21572737-21715574:+,tetratricopeptide_repeat_domain_39C,OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	ARFRP1--UCKL1	2	0	ARFRP1	2669	chr20:62337709:-	UCKL1	17159	chr20:62577996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	ARFRP1->ADP_ribosylation_factor_related_protein_1,ArcherDX_panel,FoundationOne_panel,chr20:62329996-62339377:-,UCKL1->chr20:62571186-62587769:-,uridine-cytidine_kinase_1_like_1	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	BAIAP2L1--GATS	2	0	BAIAP2L1	8082	chr7:97944772:-	GATS	28227	chr7:99810756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	CFD--SERINC2	2	0	CFD	3504	chr19:861956:+	SERINC2	19127	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	CFD->chr19:859453-863453:+,complement_factor_D_(adipsin),SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	1	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	CLDN12--ARPC1A	2	0	CLDN12	4834	chr7:90034922:+	ARPC1A	33955	chr7:98955963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	CLDN12->chr7:90013035-90142716:+,claudin_12,ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	CMIP--C7orf50	2	0	CMIP	1372	chr16:81479146:+	C7orf50	45549	chr7:1049779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	CRYM--GNAS	2	0	CRYM	1106	chr16:21314299:-	GNAS	34217	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	CRYM->chr16:21250195-21314404:-,crystallin_mu,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	DKC1--PDHA1	2	0	DKC1	1226	chrX:153991256:+	PDHA1	24452	chrX:19373467:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	DKC1->Oncogene{Bushman},chrX:153991031-154005964:+,dyskerin_pseudouridine_synthase_1,PDHA1->chrX:19362011-19379823:+,pyruvate_dehydrogenase_(lipoamide)_alpha_1	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	FDPS--RPS6KB1	2	0	FDPS	3847	chr1:155282186:+	RPS6KB1	25654	chr17:58018197:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	GUK1--SKI	2	0	GUK1	1402	chr1:228328064:+	SKI	15838	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	GUK1->chr1:228327663-228336685:+,guanylate_kinase_1,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	HDHD3--PAICS	2	0	HDHD3	1271	chr9:116139009:-	PAICS	12053	chr4:57314584:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	HDHD3->chr9:116135699-116139279:-,haloacid_dehalogenase_like_hydrolase_domain_containing_3,PAICS->chr4:57301907-57327534:+,phosphoribosylaminoimidazole_carboxylase;_phosphoribosylaminoimidazolesuccinocarboxamide_synthase	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	HSP90AA1--RP11-474G23.1	2	0	HSP90AA1	3867	chr14:102553323:-	RP11-474G23.1	21234	chr2:68374699:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1,RP11-474G23.1->chr2:68358370-68488362:-	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	LY75--MARCH7	2	0	LY75	15967	chr2:160728962:-	MARCH7	63648	chr2:160623795:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[824],LY75->chr2:160628362-160761260:-,lymphocyte_antigen_75,MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	MAP2K7--TNPO2	2	0	MAP2K7	1226	chr19:7968953:+	TNPO2	20050	chr19:12822427:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	MAP2K7->chr19:7968728-7979363:+,mitogen-activated_protein_kinase_kinase_7,TNPO2->chr19:12810008-12834825:-,transportin_2	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	MATR3--PRKRIP1	2	0	MATR3	4523	chr5:138614818:+	PRKRIP1	39529	chr7:102038067:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	MATR3->chr5:138609441-138667360:+,matrin_3,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	NAB1--SDF4	2	0	NAB1	2579	chr2:191514086:+	SDF4	27331	chr1:1154307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	NAB1->NGFI-A_binding_protein_1,chr2:191511472-191557492:+,SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	NME2--S100A13	2	0	NME2	7432	chr17:49245704:+	S100A13	19659	chr1:153591514:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	NME2->NME/NM23_nucleoside_diphosphate_kinase_2,chr17:49230951-49249105:+,S100A13->Oncogene{Bushman},S100_calcium_binding_protein_A13,chr1:153591263-153606568:-	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	NUP54--BTC	2	0	NUP54	11508	chr4:77045802:-	BTC	22977	chr4:75673359:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	NUP54->chr4:77035812-77069668:-,nucleoporin_54kDa,BTC->betacellulin,chr4:75669969-75719896:-	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	OSBPL10--STT3B	2	0	OSBPL10	10820	chr3:31917925:-	STT3B	45034	chr3:31656597:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	LOCAL_INVERSION:-:+:[20270],OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	RDH13--MRI1	2	0	RDH13	9547	chr19:55568021:-	MRI1	27765	chr19:13882935:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	RDH13->chr19:55550476-55582659:-,retinol_dehydrogenase_13_(all-trans/9-cis),MRI1->chr19:13875346-13885096:+,methylthioribose-1-phosphate_isomerase_1	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	RP11-1379J22.5--MAZ	2	0	RP11-1379J22.5	1720	chr5:179085482:+	MAZ	9084	chr16:29819551:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	RP11-1379J22.5->chr5:179084763-179091433:+,MAZ->MYC_associated_zinc_finger_protein,chr16:29817427-29823649:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	2	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	SCAF4--TUBGCP6	2	0	SCAF4	16796	chr21:33057362:-	TUBGCP6	36808	chr22:50658444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	TSEN15--RP11-92G12.3	2	0	TSEN15	2724	chr1:184023997:+	RP11-92G12.3	12380	chr1:200659437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	TSEN15->chr1:184020811-184043346:+,tRNA_splicing_endonuclease_subunit_15,RP11-92G12.3->chr1:200638635-200663378:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	TSEN2--PPARG	2	0	TSEN2	6301	chr3:12545283:+	PPARG	34642	chr3:12458203:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},YOSHIHARA_TCGA_num_samples[BLCA:3],LOCAL_REARRANGEMENT:+:[50076],TSEN2->chr3:12525931-12581122:+,tRNA_splicing_endonuclease_subunit_2,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	1	0	1	1	TRUE	ACH-000949
TGBC11TKB_STOMACH	WASH5P--A4GALT	2	0	WASH5P	3129	chr19:66346:-	A4GALT	13507	chr22:43091637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	WASH5P->WAS_protein_family_homolog_5_pseudogene,chr19:60105-71626:-,A4GALT->alpha_1,4-galactosyltransferase,chr22:43088127-43117304:-	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	ZCRB1--CNOT1	2	0	ZCRB1	5579	chr12:42711142:-	CNOT1	48029	chr16:58568299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	ZCRB1->chr12:42705880-42719920:-,zinc_finger_CCHC-type_and_RNA_binding_motif_containing_1,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
NCIH1781_LUNG	TEAD1--KANSL3	133	30	TEAD1	2140	chr11:12697108:+	KANSL3	41745	chr2:97276875:-	ONLY_REF_SPLICE	YES	13	28	0.93	0.85	1.399	0.3156	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-	NCIH1781_LUNG	0.85	0.93	1.7146	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	ADNP--TSNARE1	111	0	ADNP	1596	chr20:49547363:-	TSNARE1	35862	chr8:143310940:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.1676	0	ADNP->activity-dependent_neuroprotector_homeobox,chr20:49505585-49547958:-,TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1	NCIH1781_LUNG	1	1	1.1676	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	ADNP--TSNARE1	48	6	ADNP	2771	chr20:49545188:-	TSNARE1	35862	chr8:143310940:-	ONLY_REF_SPLICE	YES	25	0	0.68	1	0.5049	0.0631	ADNP->activity-dependent_neuroprotector_homeobox,chr20:49505585-49547958:-,TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1	NCIH1781_LUNG	0.68	1	0.568	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	TTC3--FHIT	42	12	TTC3	19590	chr21:38480746:+	FHIT	72955	chr3:60807705:-	ONLY_REF_SPLICE	YES	34	9	0.61	0.86	0.4418	0.1262	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	NCIH1781_LUNG	0.61	0.86	0.568	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	CHST12--TEAD1	19	0	CHST12	1058	chr7:2443280:+	TEAD1	10905	chr11:12785726:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1999	0	CHST12->carbohydrate_(chondroitin_4)_sulfotransferase_12,chr7:2443223-2474242:+,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	NCIH1781_LUNG	1	1	0.1999	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	FHIT--TTC3	13	2	FHIT	6726	chr3:61027719:-	TTC3	44732	chr21:38494117:+	ONLY_REF_SPLICE	YES	9	34	0.62	0.31	0.1367	0.021	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH1781_LUNG	0.31	0.62	0.1577	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	TEAD1--KANSL3	4	18	TEAD1	2140	chr11:12697108:+	KANSL3	42000	chr2:97276620:-	ONLY_REF_SPLICE	YES	13	34	0.63	0.39	0.0421	0.1893	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-	NCIH1781_LUNG	0.39	0.63	0.2314	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	TTC3--FHIT	5	0	TTC3	19590	chr21:38480746:+	FHIT	80611	chr3:59997126:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	NCIH1781_LUNG	1	1	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	CHST12--TEAD1	4	0	CHST12	1072	chr7:2443294:+	TEAD1	10905	chr11:12785726:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	CHST12->carbohydrate_(chondroitin_4)_sulfotransferase_12,chr7:2443223-2474242:+,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	NCIH1781_LUNG	1	1	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	TEAD1--KANSL3	3	2	TEAD1	2140	chr11:12697108:+	KANSL3	43321	chr2:97275299:-	ONLY_REF_SPLICE	YES	13	56	0.28	0.08	0.0316	0.021	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-	NCIH1781_LUNG	0.08	0.28	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	TEAD1--KANSL3	3	1	TEAD1	1413	chr11:12696381:+	KANSL3	42000	chr2:97276620:-	ONLY_REF_SPLICE	YES	9	34	0.31	0.11	0.0316	0.0105	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-	NCIH1781_LUNG	0.11	0.31	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	RALGAPA1--RP11-85K15.2	3	0	RALGAPA1	48923	chr14:36064840:-	RP11-85K15.2	63730	chr14:35438513:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	RALGAPA1->Ral_GTPase_activating_protein_catalytic_alpha_subunit_1,chr14:36007558-36278510:-,RP11-85K15.2->chr14:35390064-35451738:-	NCIH1781_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	RP3-416H24.1--HDGF	3	0	RP3-416H24.1	3022	chr12:52639211:-	HDGF	15549	chr1:156712756:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	RP3-416H24.1->chr12:52638832-52641232:-,HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor	NCIH1781_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	FHIT--TTC3	2	2	FHIT	7819	chr3:60807613:-	TTC3	43097	chr21:38480692:+	ONLY_REF_SPLICE	YES	9	31	0.31	0.11	0.021	0.021	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH1781_LUNG	0.11	0.31	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	FUT3--MLLT1	2	0	FUT3	1085	chr19:5851401:-	MLLT1	13089	chr19:6270770:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	FUT3->chr19:5842899-5851485:-,fucosyltransferase_3_(Lewis_blood_group),MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1	NCIH1781_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	TTC3--FHIT	1	2	TTC3	1139	chr21:38445664:+	FHIT	72955	chr3:60807705:-	ONLY_REF_SPLICE	YES	1	9	0.75	0.25	0.0105	0.021	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	NCIH1781_LUNG	0.25	0.75	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	TEAD1--KANSL3	1	1	TEAD1	1413	chr11:12696381:+	KANSL3	41745	chr2:97276875:-	ONLY_REF_SPLICE	YES	9	28	0.18	0.07	0.0105	0.0105	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-	NCIH1781_LUNG	0.07	0.18	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1651_LUNG	ZNFX1--ECI1	181	8	ZNFX1	1406	chr20:47894558:-	ECI1	30844	chr16:2296987:-	ONLY_REF_SPLICE	YES	2	5	0.99	0.97	2.6898	0.1189	ZNFX1->chr20:47854483-47894963:-,zinc_finger_NFX1-type_containing_1,ECI1->chr16:2289396-2302301:-,enoyl-CoA_delta_isomerase_1	NCIH1651_LUNG	0.97	0.99	2.8087	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	KATNBL1--TP53BP1	149	135	KATNBL1	15231	chr15:34437599:-	TP53BP1	43485	chr15:43714324:-	ONLY_REF_SPLICE	YES	57	84	0.83	0.77	2.2142	2.0062	KATNBL1->chr15:34432875-34502297:-,katanin_regulatory_subunit_B1_like_1,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	NCIH1651_LUNG	0.77	0.83	4.2204	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	SLC31A1--CPNE2	134	39	SLC31A1	1151	chr9:115983958:+	CPNE2	29499	chr16:57159772:+	ONLY_REF_SPLICE	YES	37	98	0.82	0.64	1.9913	0.5796	SLC31A1->chr9:115983808-116028674:+,solute_carrier_family_31_member_1,CPNE2->chr16:57126449-57181878:+,copine_2	NCIH1651_LUNG	0.64	0.82	2.5709	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	LRIG2--CHIA	81	52	LRIG2	7626	chr1:113641407:+	CHIA	31942	chr1:111853022:+	ONLY_REF_SPLICE	YES	3	1	0.98	0.99	1.2037	0.7728	{Klijn_CCL:Lung=1},LRIG2->chr1:113615831-113674882:+,leucine-rich_repeats_and_immunoglobulin_like_domains_2,CHIA->chitinase,_acidic,chr1:111833484-111863188:+	NCIH1651_LUNG	0.98	0.99	1.9765	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	CHMP4C--RP11-122A3.2	81	49	CHMP4C	1383	chr8:82645051:+	RP11-122A3.2	13444	chr8:91973076:-	ONLY_REF_SPLICE	YES	31	39	0.81	0.77	1.2037	0.7282	CHMP4C->charged_multivesicular_body_protein_4C,chr8:82644669-82671750:+,RP11-122A3.2->chr8:91970865-91997485:-	NCIH1651_LUNG	0.77	0.81	1.9319	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RNF138--MCM3AP	56	72	RNF138	2032	chr18:29672849:+	MCM3AP	18853	chr21:47700489:-	ONLY_REF_SPLICE	YES	109	59	0.54	0.68	0.8322	1.07	{Klijn_CCL:Lung=1},RNF138->chr18:29671818-29711524:+,ring_finger_protein_138,MCM3AP->chr21:47655047-47706211:-,minichromosome_maintenance_complex_component_3_associated_protein	NCIH1651_LUNG	0.54	0.68	1.9022	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RABGAP1L--DNM3	58	39	RABGAP1L	1248	chr1:174128795:+	DNM3	79165	chr1:172348158:+	ONLY_REF_SPLICE	YES	20	4	0.83	0.96	0.8619	0.5796	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,DNM3->chr1:171810621-172387606:+,dynamin_3	NCIH1651_LUNG	0.83	0.96	1.4415	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RNF138--MCM3AP	53	52	RNF138	2032	chr18:29672849:+	MCM3AP	19291	chr21:47700051:-	ONLY_REF_SPLICE	YES	109	65	0.49	0.62	0.7876	0.7728	{Klijn_CCL:Lung=1},RNF138->chr18:29671818-29711524:+,ring_finger_protein_138,MCM3AP->chr21:47655047-47706211:-,minichromosome_maintenance_complex_component_3_associated_protein	NCIH1651_LUNG	0.49	0.62	1.5604	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	CTDSPL2--HEPHL1	37	48	CTDSPL2	1539	chr15:44719970:+	HEPHL1	28181	chr11:93778839:+	ONLY_REF_SPLICE	YES	62	0	0.58	1	0.5498	0.7133	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,HEPHL1->chr11:93754527-93846917:+,hephaestin_like_1	NCIH1651_LUNG	0.58	1	1.2631	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	CEP89--FAM74A1	28	7	CEP89	10017	chr19:33430763:-	FAM74A1	29972	chr9:39906143:+	ONLY_REF_SPLICE	YES	35	0	0.5	1	0.4161	0.104	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,FAM74A1->chr9:39900346-39906219:+,family_with_sequence_similarity_74_member_A1	NCIH1651_LUNG	0.5	1	0.5201	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	TAB1--GRAP2	28	0	TAB1	1095	chr22:39795840:+	GRAP2	26140	chr22:40361994:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4161	0	TAB1->TGF-beta_activated_kinase_1/MAP3K7_binding_protein_1,chr22:39795746-39833065:+,GRAP2->GRB2-related_adaptor_protein_2,chr22:40297086-40369725:+	NCIH1651_LUNG	1	1	0.4161	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	ATP13A3--RP11-359H18.2	22	19	ATP13A3	32610	chr3:194134488:-	RP11-359H18.2	41616	chr19:23778924:+	ONLY_REF_SPLICE	YES	81	0	0.34	1	0.3269	0.2824	ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,RP11-359H18.2->chr19:23778924-23780961:+	NCIH1651_LUNG	0.34	1	0.6093	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	LRRC28--IQCH	22	16	LRRC28	7307	chr15:99828156:+	IQCH	49234	chr15:67677274:+	ONLY_REF_SPLICE	YES	17	1	0.69	0.97	0.3269	0.2378	{Klijn_CCL:Lung=1},LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28,IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+	NCIH1651_LUNG	0.69	0.97	0.5647	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	LINC01057--ALG14	17	18	LINC01057	1326	chr1:95285512:-	ALG14	20484	chr1:95448862:-	ONLY_REF_SPLICE	YES	7	54	0.83	0.39	0.2526	0.2675	LINC01057->chr1:95104017-95285837:-,long_intergenic_non-protein_coding_RNA_1057,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	NCIH1651_LUNG	0.39	0.83	0.5201	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	MTMR10--TRPM1	19	9	MTMR10	17046	chr15:31239333:-	TRPM1	56333	chr15:31295273:-	ONLY_REF_SPLICE	YES	15	0	0.65	1	0.2824	0.1337	LOCAL_REARRANGEMENT:-:[9454],MTMR10->chr15:31231144-31283810:-,myotubularin_related_protein_10,TRPM1->Oncogene{Bushman},chr15:31293264-31453476:-,transient_receptor_potential_cation_channel_subfamily_M_member_1	NCIH1651_LUNG	0.65	1	0.4161	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	LRIG2--CHIA	8	30	LRIG2	7626	chr1:113641407:+	CHIA	34738	chr1:111857162:+	ONLY_REF_SPLICE	YES	3	13	0.93	0.75	0.1189	0.4458	{Klijn_CCL:Lung=1},LRIG2->chr1:113615831-113674882:+,leucine-rich_repeats_and_immunoglobulin_like_domains_2,CHIA->chitinase,_acidic,chr1:111833484-111863188:+	NCIH1651_LUNG	0.75	0.93	0.5647	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	PML--MCTP2	13	10	PML	2742	chr15:74290817:+	MCTP2	38521	chr15:94899366:+	ONLY_REF_SPLICE	YES	17	19	0.57	0.55	0.1932	0.1486	PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia,MCTP2->chr15:94774767-95023632:+,multiple_C2_domains,_transmembrane_2	NCIH1651_LUNG	0.55	0.57	0.3418	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	LRIG2--CHIA	7	30	LRIG2	7626	chr1:113641407:+	CHIA	33035	chr1:111854311:+	ONLY_REF_SPLICE	YES	3	7	0.93	0.84	0.104	0.4458	{Klijn_CCL:Lung=1},LRIG2->chr1:113615831-113674882:+,leucine-rich_repeats_and_immunoglobulin_like_domains_2,CHIA->chitinase,_acidic,chr1:111833484-111863188:+	NCIH1651_LUNG	0.84	0.93	0.5498	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	CHEK2--UBE2L3	13	0	CHEK2	1654	chr22:29137757:-	UBE2L3	30245	chr22:21947150:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1932	0	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3	NCIH1651_LUNG	1	1	0.1932	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	SLC31A1--CPNE2	9	13	SLC31A1	1151	chr9:115983958:+	CPNE2	32787	chr16:57168687:+	ONLY_REF_SPLICE	YES	37	118	0.37	0.16	0.1337	0.1932	SLC31A1->chr9:115983808-116028674:+,solute_carrier_family_31_member_1,CPNE2->chr16:57126449-57181878:+,copine_2	NCIH1651_LUNG	0.16	0.37	0.3269	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	DERA--RP11-405A12.2	11	2	DERA	1243	chr12:16064348:+	RP11-405A12.2	18775	chr12:20076132:+	ONLY_REF_SPLICE	YES	7	0	0.65	1	0.1635	0.0297	DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase,RP11-405A12.2->chr12:19928385-20162871:+	NCIH1651_LUNG	0.65	1	0.1932	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	PLA2G6--CHEK2	9	9	PLA2G6	5967	chr22:38565225:-	CHEK2	36919	chr22:29130715:-	ONLY_REF_SPLICE	YES	17	3	0.51	0.86	0.1337	0.1337	PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI,CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-	NCIH1651_LUNG	0.51	0.86	0.2674	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	FOXJ3--HYI	9	7	FOXJ3	7672	chr1:42730786:-	HYI	26050	chr1:43917990:-	ONLY_REF_SPLICE	YES	38	32	0.3	0.33	0.1337	0.104	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,HYI->chr1:43916824-43919660:-,hydroxypyruvate_isomerase_(putative)	NCIH1651_LUNG	0.3	0.33	0.2377	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	LSS--CHORDC1	8	11	LSS	15239	chr21:47625750:-	CHORDC1	29290	chr11:89951352:-	ONLY_REF_SPLICE	YES	55	476	0.26	0.04	0.1189	0.1635	LSS->chr21:47608055-47648738:-,lanosterol_synthase_(2,3-oxidosqualene-lanosterol_cyclase),CHORDC1->chr11:89934328-89956532:-,cysteine_and_histidine_rich_domain_containing_1	NCIH1651_LUNG	0.04	0.26	0.2824	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	ARMC5--U91319.1	8	8	ARMC5	5195	chr16:31474238:+	U91319.1	16716	chr16:13656564:+	ONLY_REF_SPLICE	YES	9	0	0.64	1	0.1189	0.1189	ARMC5->armadillo_repeat_containing_5,chr16:31469401-31478487:+,U91319.1->chr16:13340173-13656775:+	NCIH1651_LUNG	0.64	1	0.2378	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RBMS3--PHF16	9	2	RBMS3	7777	chr3:29781368:+	PHF16	34010	chrX:46844285:+	ONLY_REF_SPLICE	YES	16	4	0.41	0.73	0.1337	0.0297	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,PHF16->chrX:46771711-46920641:+	NCIH1651_LUNG	0.41	0.73	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	SLC31A1--CPNE2	5	16	SLC31A1	1151	chr9:115983958:+	CPNE2	30633	chr16:57161761:+	ONLY_REF_SPLICE	YES	37	91	0.36	0.19	0.0743	0.2378	SLC31A1->chr9:115983808-116028674:+,solute_carrier_family_31_member_1,CPNE2->chr16:57126449-57181878:+,copine_2	NCIH1651_LUNG	0.19	0.36	0.3121	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	ATP13A3--RP11-359H18.2	3	19	ATP13A3	34170	chr3:194132928:-	RP11-359H18.2	41616	chr19:23778924:+	ONLY_REF_SPLICE	YES	82	0	0.21	1	0.0446	0.2824	ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,RP11-359H18.2->chr19:23778924-23780961:+	NCIH1651_LUNG	0.21	1	0.327	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	LINC01057--ALG14	3	18	LINC01057	1326	chr1:95285512:-	ALG14	20157	chr1:95449189:-	ONLY_REF_SPLICE	YES	7	51	0.75	0.29	0.0446	0.2675	LINC01057->chr1:95104017-95285837:-,long_intergenic_non-protein_coding_RNA_1057,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	NCIH1651_LUNG	0.29	0.75	0.3121	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	PDE4D--FAM19A2	6	5	PDE4D	30827	chr5:58476421:-	FAM19A2	79403	chr12:62417560:-	ONLY_REF_SPLICE	YES	14	0	0.44	1	0.0892	0.0743	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	NCIH1651_LUNG	0.44	1	0.1635	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	IQCK--PRKCB	6	4	IQCK	12415	chr16:19838459:+	PRKCB	22426	chr16:24043457:+	ONLY_REF_SPLICE	YES	14	0	0.42	1	0.0892	0.0594	IQCK->IQ_motif_containing_K,chr16:19727778-19868907:+,PRKCB->chr16:23847322-24231932:+,protein_kinase_C_beta	NCIH1651_LUNG	0.42	1	0.1486	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	ZNFX1--ECI1	4	9	ZNFX1	1497	chr20:47894467:-	ECI1	30844	chr16:2296987:-	ONLY_REF_SPLICE	YES	3	5	0.81	0.72	0.0594	0.1337	ZNFX1->chr20:47854483-47894963:-,zinc_finger_NFX1-type_containing_1,ECI1->chr16:2289396-2302301:-,enoyl-CoA_delta_isomerase_1	NCIH1651_LUNG	0.72	0.81	0.1931	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	LETM1--MFSD10	5	2	LETM1	1379	chr4:1857596:-	MFSD10	26793	chr4:2935671:-	ONLY_REF_SPLICE	YES	9	99	0.44	0.07	0.0743	0.0297	LETM1->chr4:1813206-1857974:-,leucine_zipper_and_EF-hand_containing_transmembrane_protein_1,MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10	NCIH1651_LUNG	0.07	0.44	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	CTDSPL2--HEPHL1	2	13	CTDSPL2	1539	chr15:44719970:+	HEPHL1	29426	chr11:93796674:+	ONLY_REF_SPLICE	YES	62	45	0.19	0.25	0.0297	0.1932	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,HEPHL1->chr11:93754527-93846917:+,hephaestin_like_1	NCIH1651_LUNG	0.19	0.25	0.2229	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	ZFAND3--RP1-153P14.8	5	0	ZFAND3	1518	chr6:37787792:+	RP1-153P14.8	18691	chr6:37502052:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0743	0	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,RP1-153P14.8->chr6:37475124-37503392:+	NCIH1651_LUNG	1	1	0.0743	TRUE	0	1	0	1	1	TRUE	ACH-000893
NCIH1651_LUNG	CTDSPL2--HEPHL1	4	3	CTDSPL2	1459	chr15:44719890:+	HEPHL1	28181	chr11:93778839:+	ONLY_REF_SPLICE	YES	5	0	0.58	1	0.0594	0.0446	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,HEPHL1->chr11:93754527-93846917:+,hephaestin_like_1	NCIH1651_LUNG	0.58	1	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	PDE4D--FAM19A2	4	3	PDE4D	30827	chr5:58476421:-	FAM19A2	82676	chr12:62261207:-	ONLY_REF_SPLICE	YES	14	1	0.33	0.88	0.0594	0.0446	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	NCIH1651_LUNG	0.33	0.88	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	BTBD8--AC068533.7	4	2	BTBD8	3811	chr1:92568226:+	AC068533.7	14394	chr7:65553794:+	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0594	0.0297	BTBD8->BTB_domain_containing_8,chr1:92545862-92613393:+,AC068533.7->chr7:65552756-65617228:+	NCIH1651_LUNG	0.6	1	0.0891	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	FEM1C--CCDC112	4	2	FEM1C	4061	chr5:114861199:-	CCDC112	13575	chr5:114620605:-	INCL_NON_REF_SPLICE	YES	15	11	0.29	0.35	0.0594	0.0297	FEM1C->chr5:114856608-114880591:-,fem-1_homolog_C,CCDC112->chr5:114602885-114632528:-,coiled-coil_domain_containing_112	NCIH1651_LUNG	0.29	0.35	0.0891	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	PDE4D--RP11-769N19.2	4	2	PDE4D	30827	chr5:58476421:-	RP11-769N19.2	59563	chr12:62534193:-	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0594	0.0297	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-769N19.2->chr12:62533780-62539424:-	NCIH1651_LUNG	0.3	1	0.0891	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	ANO2--STRAP	4	0	ANO2	23770	chr12:5841686:-	STRAP	46200	chr12:16046981:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0594	0	ANO2->anoctamin_2,chr12:5641035-6055398:-,STRAP->chr12:16035325-16056412:+,serine/threonine_kinase_receptor_associated_protein	NCIH1651_LUNG	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	FAT3--NPAT	4	0	FAT3	4309	chr11:92088570:+	NPAT	53012	chr11:108064744:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0594	0	FAT3->FAT_atypical_cadherin_3,chr11:92085262-92629618:+,NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription	NCIH1651_LUNG	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	LRRC28--IQCH	1	11	LRRC28	7307	chr15:99828156:+	IQCH	50318	chr15:67681169:+	ONLY_REF_SPLICE	NO	17	2	0.41	0.86	0.0149	0.1635	{Klijn_CCL:Lung=1},LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28,IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+	NCIH1651_LUNG	0.41	0.86	0.1784	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	PLA2G6--CHEK2	1	9	PLA2G6	8398	chr22:38559422:-	CHEK2	36919	chr22:29130715:-	ONLY_REF_SPLICE	NO	17	3	0.37	0.77	0.0149	0.1337	PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI,CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-	NCIH1651_LUNG	0.37	0.77	0.1486	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	ADAMTS17--CTD-3185P2.1	3	0	ADAMTS17	4299	chr15:100871094:-	CTD-3185P2.1	38035	chr15:66783055:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	ADAMTS17->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_17,chr15:100511794-100882210:-,CTD-3185P2.1->chr15:66782086-66784447:-	NCIH1651_LUNG	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	C5orf42--CTD-2353F22.1	3	0	C5orf42	56360	chr5:37108395:-	CTD-2353F22.1	62508	chr5:36705953:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	C5orf42->chr5:37106330-37249530:-,chromosome_5_open_reading_frame_42,CTD-2353F22.1->chr5:36666316-36725297:-	NCIH1651_LUNG	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	CHEK2--UBE2L3	3	0	CHEK2	1654	chr22:29137757:-	UBE2L3	28377	chr22:21921799:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3	NCIH1651_LUNG	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	PDE4D--FAM19A2	1	5	PDE4D	30827	chr5:58476421:-	FAM19A2	78262	chr12:62464343:-	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0149	0.0743	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	NCIH1651_LUNG	0.3	1	0.0892	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	C17orf76-AS1--RTF1	2	0	C17orf76-AS1	1882	chr17:16343017:+	RTF1	15587	chr15:41730519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	C17orf76-AS1->chr17:16342136-16381992:+,RTF1->RTF1_homolog,_Paf1/RNA_polymerase_II_complex_component,chr15:41700606-41775761:+	NCIH1651_LUNG	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	EPS8L2--ERAL1	2	0	EPS8L2	6547	chr11:710486:+	ERAL1	19573	chr17:27183523:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	EPS8L2->EPS8_like_2,chr11:694438-727727:+,ERAL1->Era_like_12S_mitochondrial_rRNA_chaperone_1,chr17:27181956-27188085:+	NCIH1651_LUNG	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	FOXJ3--HYI	1	4	FOXJ3	7672	chr1:42730786:-	HYI	26356	chr1:43917684:-	ONLY_REF_SPLICE	NO	38	41	0.12	0.11	0.0149	0.0594	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,HYI->chr1:43916824-43919660:-,hydroxypyruvate_isomerase_(putative)	NCIH1651_LUNG	0.11	0.12	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	METTL17--CNOT1	2	0	METTL17	3833	chr14:21460781:+	CNOT1	49782	chr16:58566299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	METTL17->chr14:21457929-21465189:+,methyltransferase_like_17,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	NCIH1651_LUNG	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RCC1--ANAPC1	2	0	RCC1	2175	chr1:28834672:+	ANAPC1	36614	chr2:112596089:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	NCIH1651_LUNG	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RP4-724E16.2--PMS1	2	0	RP4-724E16.2	3555	chr20:52179406:+	PMS1	14281	chr2:190660495:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	RP4-724E16.2->chr20:52169309-52191847:+,PMS1->Oncogene{Bushman},PMS1_homolog_1,_mismatch_repair_system_component,chr2:190649107-190742355:+	NCIH1651_LUNG	1	1	0.0297	TRUE	0	1	0	1	1	TRUE	ACH-000893
NCIH1651_LUNG	DERA--RP11-405A12.2	1	2	DERA	1582	chr12:16064687:+	RP11-405A12.2	18775	chr12:20076132:+	ONLY_REF_SPLICE	YES	17	0	0.15	1	0.0149	0.0297	DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase,RP11-405A12.2->chr12:19928385-20162871:+	NCIH1651_LUNG	0.15	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	PML--MCTP2	1	2	PML	2742	chr15:74290817:+	MCTP2	40817	chr15:94910834:+	ONLY_REF_SPLICE	YES	17	27	0.15	0.1	0.0149	0.0297	PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia,MCTP2->chr15:94774767-95023632:+,multiple_C2_domains,_transmembrane_2	NCIH1651_LUNG	0.1	0.15	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000893
HS229T_FIBROBLAST	VIM--TMSB4X	5	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS229T_FIBROBLAST	1	1	0.0497	TRUE	0	0	0	15	0	TRUE	ACH-000131
HS229T_FIBROBLAST	JUN--MT2A	4	0	JUN	2308	chr1:59248478:-	MT2A	7705	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	JUN->ArcherDX_panel,FoundationOne_panel,Jun_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr1:59246465-59249785:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS229T_FIBROBLAST	1	1	0.0398	TRUE	0	0	0	6	0	TRUE	ACH-000131
HS229T_FIBROBLAST	FARSB--WDFY1	2	0	FARSB	2378	chr2:223513459:-	WDFY1	31688	chr2:224759056:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit,WDFY1->WD_repeat_and_FYVE_domain_containing_1,chr2:224720433-224810104:-	HS229T_FIBROBLAST	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000131
HS229T_FIBROBLAST	LARP1--MATR3	2	0	LARP1	19930	chr5:154191200:+	MATR3	45337	chr5:138650364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,MATR3->chr5:138609441-138667360:+,matrin_3	HS229T_FIBROBLAST	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000131
HS229T_FIBROBLAST	RCC1--PPP1CB	2	0	RCC1	2175	chr1:28834672:+	PPP1CB	26980	chr2:29016729:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta	HS229T_FIBROBLAST	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000131
HS229T_FIBROBLAST	SOX2-OT--CCDC50	2	0	SOX2-OT	1083	chr3:180707640:+	CCDC50	42293	chr3:191078858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+,CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50	HS229T_FIBROBLAST	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000131
HUPT4_PANCREAS	UBB--MTND2P28	6	0	UBB	2221	chr17:16285332:+	MTND2P28	5962	chr1:565033:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	UBB->chr17:16284112-16286059:+,ubiquitin_B,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HUPT4_PANCREAS	1	1	0.067	TRUE	0	0	0	2	0	TRUE	ACH-000213
HUPT4_PANCREAS	ATR--U2SURP	3	0	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	HUPT4_PANCREAS	1	1	0.0335	TRUE	0	10	0	10	7	TRUE	ACH-000213
HUPT4_PANCREAS	PLSCR1--MBD2	2	0	PLSCR1	1398	chr3:146262254:-	MBD2	22263	chr18:51715381:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1,MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2	HUPT4_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000213
HUPT4_PANCREAS	RP11-1379J22.5--NGLY1	2	0	RP11-1379J22.5	1720	chr5:179085482:+	NGLY1	19654	chr3:25775473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP11-1379J22.5->chr5:179084763-179091433:+,NGLY1->N-glycanase_1,chr3:25760435-25831530:-	HUPT4_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000213
HUPT4_PANCREAS	RP4-756H11.3--GET4	2	0	RP4-756H11.3	1089	chr7:66119613:+	GET4	14710	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP4-756H11.3->chr7:66119525-66134842:+,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	HUPT4_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000213
HUPT4_PANCREAS	SAMD12--MAL2	2	0	SAMD12	1192	chr8:119634043:-	MAL2	25144	chr8:120233827:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MAL2->chr8:120177273-120257913:+,mal,_T-cell_differentiation_protein_2_(gene/pseudogene)	HUPT4_PANCREAS	1	1	0.0223	TRUE	0	1	0	2	1	TRUE	ACH-000213
HUPT4_PANCREAS	SGK3--FNTA	2	0	SGK3	10974	chr8:67726163:+	FNTA	31243	chr8:42914235:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	SGK3->chr8:67624653-67774257:+,serum/glucocorticoid_regulated_kinase_family_member_3,FNTA->chr8:42889337-42940931:+,farnesyltransferase,_CAAX_box,_alpha	HUPT4_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000213
HUPT4_PANCREAS	TES--CAV1	2	0	TES	1242	chr7:115850788:+	CAV1	16985	chr7:116199000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	{Klijn_CCL:Lung=1,Head-Neck=1},TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HUPT4_PANCREAS	1	1	0.0223	TRUE	1	1	1	3	0	TRUE	ACH-000213
HUPT4_PANCREAS	ATXN7--THOC7	1	2	ATXN7	5937	chr3:63898901:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	YES	14	42	0.18	0.07	0.0112	0.0223	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	HUPT4_PANCREAS	0.07	0.18	0.0335	TRUE	0	4	3	3	1	TRUE	ACH-000213
PLCPRF5_LIVER	HNF1A-AS1--POP5	11	7	HNF1A-AS1	1322	chr12:121418447:-	POP5	11802	chr12:121017726:-	ONLY_REF_SPLICE	YES	7	192	0.72	0.09	0.1255	0.0798	HNF1A-AS1->HNF1A_antisense_RNA_1,chr12:121406416-121418768:-,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PLCPRF5_LIVER	0.09	0.72	0.2053	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	HNF1A-AS1--POP5	9	11	HNF1A-AS1	5762	chr12:121408101:-	POP5	11802	chr12:121017726:-	INCL_NON_REF_SPLICE	YES	2	192	0.91	0.09	0.1026	0.1255	HNF1A-AS1->HNF1A_antisense_RNA_1,chr12:121406416-121418768:-,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PLCPRF5_LIVER	0.09	0.91	0.2281	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	ATF1--LINC00592	8	3	ATF1	4114	chr12:51174021:+	LINC00592	18513	chr12:52617230:+	ONLY_REF_SPLICE	YES	60	0	0.15	1	0.0912	0.0342	ATF1->Oncogene{Bushman},activating_transcription_factor_1,chr12:51157493-51214905:+,LINC00592->chr12:52604714-52617588:+,long_intergenic_non-protein_coding_RNA_592	PLCPRF5_LIVER	0.15	1	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	HNF1A-AS1--POP5	3	9	HNF1A-AS1	2352	chr12:121417417:-	POP5	11802	chr12:121017726:-	ONLY_REF_SPLICE	YES	7	192	0.63	0.06	0.0342	0.1026	HNF1A-AS1->HNF1A_antisense_RNA_1,chr12:121406416-121418768:-,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PLCPRF5_LIVER	0.06	0.63	0.1368	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	HNF1A-AS1--POP5	3	9	HNF1A-AS1	4589	chr12:121412288:-	POP5	11802	chr12:121017726:-	ONLY_REF_SPLICE	YES	5	192	0.71	0.06	0.0342	0.1026	HNF1A-AS1->HNF1A_antisense_RNA_1,chr12:121406416-121418768:-,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PLCPRF5_LIVER	0.06	0.71	0.1368	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	DDA1--MYO9B	5	0	DDA1	1140	chr19:17420466:+	MYO9B	36789	chr19:17305365:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	LOCAL_REARRANGEMENT:+:[94981],DDA1->DET1_and_DDB1_associated_1,chr19:17420327-17434110:+,MYO9B->chr19:17186591-17325346:+,myosin_IXB	PLCPRF5_LIVER	1	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	RAD18--SRGAP3	4	1	RAD18	4654	chr3:8988904:-	SRGAP3	32198	chr3:9166601:-	ONLY_REF_SPLICE	YES	36	1	0.12	0.83	0.0456	0.0114	LOCAL_REARRANGEMENT:-:[16818],RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,SRGAP3->Oncogene{Bushman},SLIT-ROBO_Rho_GTPase_activating_protein_3,chr3:9022275-9404737:-	PLCPRF5_LIVER	0.12	0.83	0.057	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	ARHGEF7--ING1	4	0	ARHGEF7	4362	chr13:111806338:+	ING1	46027	chr13:111371576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0456	0	ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	PLCPRF5_LIVER	1	1	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	TGIF1--MYL12B	3	0	TGIF1	8043	chr18:3450503:+	MYL12B	20407	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Lung=1},TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	PLCPRF5_LIVER	1	1	0.0342	TRUE	0	2	0	6	0	TRUE	ACH-001318
PLCPRF5_LIVER	ATF2--MTX2	2	0	ATF2	6675	chr2:175994866:-	MTX2	26795	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,MTX2->chr2:177134123-177202753:+,metaxin_2	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	1	0	2	0	TRUE	ACH-001318
PLCPRF5_LIVER	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	6	0	16	3	TRUE	ACH-001318
PLCPRF5_LIVER	FOSB--GNAS	2	0	FOSB	1718	chr19:45971970:+	GNAS	26859	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx&tcga_normals:4/3694=0.11%,FOSB->FosB_proto-oncogene,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr19:45971253-45978437:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	GSE1--AC013394.2	2	0	GSE1	2365	chr16:85647004:+	AC013394.2	29259	chr15:93428745:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,AC013394.2->chr15:93425937-93441975:+	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	IDH3G--LINC00894	2	0	IDH3G	4466	chrX:153055650:-	LINC00894	19589	chrX:149115392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	IDH3G->chrX:153051221-153059978:-,isocitrate_dehydrogenase_3_(NAD(+))_gamma,LINC00894->chrX:149106846-149392815:+,long_intergenic_non-protein_coding_RNA_894	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	RP11-268G12.1--RPS6KA3	2	0	RP11-268G12.1	1247	chrX:27416868:-	RPS6KA3	17882	chrX:20252932:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	RP11-268G12.1->chrX:27193037-27417114:-,RPS6KA3->chrX:20168029-20285523:-,ribosomal_protein_S6_kinase_A3	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	TRAPPC9--MAEA	2	0	TRAPPC9	55504	chr8:140898123:-	MAEA	82713	chr4:1326545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	DNAJC24--IMMP1L	1	2	DNAJC24	2020	chr11:31392406:+	IMMP1L	26312	chr11:31491344:-	ONLY_REF_SPLICE	YES	32	15	0.09	0.17	0.0114	0.0228	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	PLCPRF5_LIVER	0.09	0.17	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	KB-1615E4.2--SPAG1	1	1	KB-1615E4.2	1162	chr8:101488064:+	SPAG1	8454	chr8:101174507:+	ONLY_REF_SPLICE	NO	1	10	0.67	0.17	0.0114	0.0114	KB-1615E4.2->chr8:101487903-101513376:+,SPAG1->chr8:101170134-101271506:+,sperm_associated_antigen_1	PLCPRF5_LIVER	0.17	0.67	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	MRPL11--CFL1	1	1	MRPL11	1826	chr11:66233384:-	CFL1	18585	chr11:65594080:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0114	0.0114	MRPL11->chr11:66202546-66234209:-,mitochondrial_ribosomal_protein_L11,CFL1->chr11:65590493-65629497:-,cofilin_1	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	TMLHE--CT45A4	1	1	TMLHE	2332	chrX:154842453:-	CT45A4	17003	chrX:134950252:-	ONLY_REF_SPLICE	YES	12	2	0.14	0.5	0.0114	0.0114	TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,CT45A4->chrX:134928331-134953994:-	PLCPRF5_LIVER	0.14	0.5	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
TT2609C02_THYROID	PAAF1--FAM168A	4	1	PAAF1	2651	chr11:73589864:+	FAM168A	22154	chr11:73179537:-	ONLY_REF_SPLICE	YES	0	4	1	0.56	0.066	0.0165	PAAF1->chr11:73587744-73638790:+,proteasomal_ATPase_associated_factor_1,FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A	TT2609C02_THYROID	0.56	1	0.0825	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	MSL2--RNF14	3	3	MSL2	3270	chr3:135913814:-	RNF14	21670	chr5:141362945:+	ONLY_REF_SPLICE	YES	6	7	0.5	0.46	0.0495	0.0495	HGNC_GENEFAM,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila),RNF14->chr5:141337893-141369856:+,ring_finger_protein_14	TT2609C02_THYROID	0.46	0.5	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	CSDE1--SLC16A1	3	0	CSDE1	1752	chr1:115300546:-	SLC16A1	33837	chr1:113464755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0	CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1,SLC16A1->Oncogene{Bushman},chr1:113454469-113499635:-,solute_carrier_family_16_member_1	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	GRB2--HSPE1	3	0	GRB2	1198	chr17:73401593:-	HSPE1	15317	chr2:198365044:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	GRB2->Oncogene{Bushman},chr17:73314157-73401790:-,growth_factor_receptor_bound_protein_2,HSPE1->chr2:198364718-198368181:+,heat_shock_protein_family_E_(Hsp10)_member_1	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	MTOR--TRIM21	3	0	MTOR	26548	chr1:11259646:-	TRIM21	64798	chr11:4406576:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	MTOR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:11166592-11322564:-,mechanistic_target_of_rapamycin,TRIM21->chr11:4406127-4414926:-,tripartite_motif_containing_21	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	PEX26--RPSA	3	0	PEX26	3882	chr22:18566259:+	RPSA	36764	chr3:39453173:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	PEX26->chr22:18560689-18613905:+,peroxisomal_biogenesis_factor_26,RPSA->chr3:39448180-39454033:+,ribosomal_protein_SA	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	PRKCD--CAPG	3	0	PRKCD	17465	chr3:53226330:+	CAPG	32199	chr2:85621992:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	PRKCD->Oncogene{Bushman},chr3:53190025-53226733:+,protein_kinase_C_delta,CAPG->Oncogene{Bushman},capping_actin_protein,_gelsolin_like,chr2:85621871-85645555:-	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	RP11-603J24.17--TBC1D22A	3	0	RP11-603J24.17	2388	chr12:56498444:-	TBC1D22A	25809	chr22:47569518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	RP11-603J24.17->chr12:56498398-56507689:-,TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	SDCBP--KPNB1	3	0	SDCBP	4943	chr8:59477625:+	KPNB1	20247	chr17:45730060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0	SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein,KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	ZNF251--HSPA9	3	0	ZNF251	3735	chr8:145979068:-	HSPA9	21974	chr5:137893122:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	ZNF251->chr8:145946298-145981802:-,zinc_finger_protein_251,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	DHX30--MAP4	2	0	DHX30	13411	chr3:47870624:+	MAP4	53134	chr3:47913590:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=7;pct=0.08%;dist=Stomach=1,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Thyroid=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[497],DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	TT2609C02_THYROID	1	1	0.033	TRUE	1	1	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	DIP2C--CTSC	2	0	DIP2C	12854	chr10:454866:-	CTSC	61013	chr11:88045722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,CTSC->cathepsin_C,chr11:88026760-88070955:-	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	GATAD2A--PABPC1	2	0	GATAD2A	14574	chr19:19607028:+	PABPC1	33363	chr8:101721451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	JTB--SNAPIN	2	0	JTB	2863	chr1:153948302:-	SNAPIN	7905	chr1:153631614:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	{Klijn_CCL:Uterus=1,Ovary=1},JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	3	0	TRUE	ACH-000716
TT2609C02_THYROID	MOB3A--UQCR11	2	0	MOB3A	5013	chr19:2085174:-	UQCR11	16696	chr19:1599559:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	MOB3A->MOB_kinase_activator_3A,chr19:2071037-2096672:-,UQCR11->chr19:1578338-1605444:-,chr19:1597171-1605480:-,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_XI	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	NBAS--YWHAQ	2	0	NBAS	39556	chr2:15470722:-	YWHAQ	69006	chr2:9727638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	PPP1R12C--SLCO4A1	2	0	PPP1R12C	8950	chr19:55610152:-	SLCO4A1	30846	chr20:61303102:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	PPP2R5C--PBX3	2	0	PPP2R5C	10176	chr14:102276373:+	PBX3	50596	chr9:128677965:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma,PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	SP100--RIMS2	2	0	SP100	1387	chr2:231281043:+	RIMS2	80639	chr8:105257144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	SP100->SP100_nuclear_antigen,chr2:231280657-231408805:+,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	SSX2IP--VRK2	2	0	SSX2IP	1433	chr1:85156054:-	VRK2	39963	chr2:58350236:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	SSX2IP->chr1:85109390-85156486:-,synovial_sarcoma,_X_breakpoint_2_interacting_protein,VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	UBAP2--PCBP2	2	0	UBAP2	17455	chr9:33953283:-	PCBP2	46238	chr12:53854799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	USMG5--ARHGAP11B	2	0	USMG5	1058	chr10:105156166:-	ARHGAP11B	23830	chr15:31008423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	USMG5->chr10:105148798-105156223:-,up-regulated_during_skeletal_muscle_growth_5_homolog_(mouse),ARHGAP11B->Rho_GTPase_activating_protein_11B,chr15:30916697-31065196:+	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	USP22--AURKA	2	0	USP22	8180	chr17:20919065:-	AURKA	24162	chr20:54965721:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22,AURKA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},aurora_kinase_A,chr20:54944445-54967393:-	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	ZBTB4--FAM101B	2	0	ZBTB4	2330	chr17:7382775:-	FAM101B	13473	chr17:295730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	ZBTB4->chr17:7362685-7387582:-,zinc_finger_and_BTB_domain_containing_4,FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	KIF13B--WHSC1L1	1	1	KIF13B	1145	chr8:29120497:-	WHSC1L1	55717	chr8:38205733:-	ONLY_REF_SPLICE	YES	2	8	0.5	0.2	0.0165	0.0165	KIF13B->chr8:28924796-29120641:-,kinesin_family_member_13B,WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-	TT2609C02_THYROID	0.2	0.5	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	TRIM44--PTPRA	1	1	TRIM44	3054	chr11:35706884:+	PTPRA	18983	chr20:2944918:+	ONLY_REF_SPLICE	YES	17	7	0.11	0.22	0.0165	0.0165	TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44,PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A	TT2609C02_THYROID	0.11	0.22	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
COV644_OVARY	JTB--SNAPIN	377	180	JTB	2863	chr1:153948302:-	SNAPIN	7905	chr1:153631614:+	ONLY_REF_SPLICE	YES	279	146	0.67	0.79	6.9195	3.3037	{Klijn_CCL:Uterus=1,Ovary=1},JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+	COV644_OVARY	0.67	0.79	10.2232	TRUE	0	0	0	3	0	TRUE	ACH-000608
COV644_OVARY	JTB--SNAPIN	15	183	JTB	2863	chr1:153948302:-	SNAPIN	7593	chr1:153631302:+	INCL_NON_REF_SPLICE	YES	279	46	0.42	0.81	0.2753	3.3588	{Klijn_CCL:Uterus=1,Ovary=1},JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+	COV644_OVARY	0.42	0.81	3.6341	TRUE	0	0	0	3	0	TRUE	ACH-000608
COV644_OVARY	JTB--SNAPIN	19	131	JTB	2863	chr1:153948302:-	SNAPIN	8215	chr1:153631924:+	ONLY_REF_SPLICE	YES	279	147	0.35	0.51	0.3487	2.4044	{Klijn_CCL:Uterus=1,Ovary=1},JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+	COV644_OVARY	0.35	0.51	2.7531	TRUE	0	0	0	3	0	TRUE	ACH-000608
COV644_OVARY	CNOT2--PTPRR	28	22	CNOT2	13086	chr12:70713144:+	PTPRR	39227	chr12:71158558:-	ONLY_REF_SPLICE	YES	24	0	0.68	1	0.5139	0.4038	{Klijn_CCL:Ovary=1},CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,PTPRR->chr12:71031853-71314623:-,protein_tyrosine_phosphatase,_receptor_type_R	COV644_OVARY	0.68	1	0.9177	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	JTB--SNAPIN	6	63	JTB	2863	chr1:153948302:-	SNAPIN	9334	chr1:153633676:+	ONLY_REF_SPLICE	YES	279	212	0.2	0.25	0.1101	1.1563	{Klijn_CCL:Uterus=1,Ovary=1},JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+	COV644_OVARY	0.2	0.25	1.2664	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	GATAD2B--NUP210L	11	4	GATAD2B	1243	chr1:153895209:-	NUP210L	23872	chr1:154112428:-	ONLY_REF_SPLICE	YES	3	0	0.83	1	0.2019	0.0734	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	COV644_OVARY	0.83	1	0.2753	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	CNOT2--PTPRR	8	12	CNOT2	11745	chr12:70704797:+	PTPRR	39227	chr12:71158558:-	ONLY_REF_SPLICE	YES	22	0	0.48	1	0.1468	0.2202	{Klijn_CCL:Ovary=1},CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,PTPRR->chr12:71031853-71314623:-,protein_tyrosine_phosphatase,_receptor_type_R	COV644_OVARY	0.48	1	0.367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	INTS3--S100A8	7	0	INTS3	1718	chr1:153701260:+	S100A8	30618	chr1:153363033:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1285	0	INTS3->chr1:153700543-153746555:+,integrator_complex_subunit_3,S100A8->Oncogene{Bushman},S100_calcium_binding_protein_A8,chr1:153362508-153363664:-	COV644_OVARY	1	1	0.1285	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	GATAD2B--NUP210L	6	1	GATAD2B	1243	chr1:153895209:-	NUP210L	32563	chr1:154076686:-	ONLY_REF_SPLICE	YES	3	12	0.7	0.37	0.1101	0.0184	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	COV644_OVARY	0.37	0.7	0.1285	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	ADARB1--SIK1	5	0	ADARB1	1051	chr21:46493818:+	SIK1	34120	chr21:44846072:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0918	0	ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+,SIK1->chr21:44834395-44847008:-,salt_inducible_kinase_1	COV644_OVARY	1	1	0.0918	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	XPNPEP1--PLXDC2	4	3	XPNPEP1	18487	chr10:111635286:-	PLXDC2	36981	chr10:20453397:+	ONLY_REF_SPLICE	YES	12	0	0.37	1	0.0734	0.0551	XPNPEP1->X-prolyl_aminopeptidase_(aminopeptidase_P)_1,_soluble,chr10:111624524-111683311:-,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	COV644_OVARY	0.37	1	0.1285	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	CPSF6--PDXK	4	0	CPSF6	11046	chr12:69656342:+	PDXK	26982	chr21:45153950:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0734	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PDXK->Oncogene{Bushman},chr21:45138975-45182188:+,pyridoxal_(pyridoxine,_vitamin_B6)_kinase	COV644_OVARY	1	1	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	FNDC3A--SETDB2	3	1	FNDC3A	4220	chr13:49649500:+	SETDB2	45302	chr13:50054355:+	ONLY_REF_SPLICE	YES	6	6	0.4	0.4	0.0551	0.0184	FNDC3A->chr13:49550048-49783915:+,fibronectin_type_III_domain_containing_3A,SETDB2->SET_domain_bifurcated_2,chr13:50018429-50069138:+	COV644_OVARY	0.4	0.4	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	ANO9--MTATP6P1	3	0	ANO9	7155	chr11:428745:-	MTATP6P1	15417	chr1:569326:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	ANO9->anoctamin_9,chr11:417933-442011:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	FAM114A2--CMTM6	3	0	FAM114A2	17377	chr5:153371818:-	CMTM6	27256	chr3:32525468:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	FAM114A2->chr5:153369688-153418496:-,family_with_sequence_similarity_114_member_A2,CMTM6->CKLF_like_MARVEL_transmembrane_domain_containing_6,chr3:32522804-32544900:-	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	FKBP5--PPP1R15B	3	0	FKBP5	9083	chr6:35565055:-	PPP1R15B	26980	chr1:204379824:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	FKBP5->FK506_binding_protein_5,chr6:35541362-35696360:-,PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	LZTS2--AKAP12	3	0	LZTS2	10800	chr10:102766578:+	AKAP12	21819	chr6:151671667:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	LZTS2->chr10:102756375-102767593:+,leucine_zipper,_putative_tumor_suppressor_2,AKAP12->A-kinase_anchoring_protein_12,Oncogene{Bushman},chr6:151561134-151679692:+	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	MYRF--RBM5	3	0	MYRF	21807	chr11:61554999:+	RBM5	48177	chr3:50154540:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	MYRF->chr11:61520114-61555990:+,myelin_regulatory_factor,RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	PRPF38A--OGDH	3	0	PRPF38A	3398	chr1:52874362:+	OGDH	21486	chr7:44687256:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0551	0	PRPF38A->chr1:52870236-52886511:+,pre-mRNA_processing_factor_38A,OGDH->chr7:44646171-44748665:+,oxoglutarate_dehydrogenase	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	RNF216--RALB	3	0	RNF216	8751	chr7:5792477:-	RALB	41963	chr2:121050717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0551	0	RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216,RALB->Oncogene{Bushman},chr2:120997640-121052289:+,v-ral_simian_leukemia_viral_oncogene_homolog_B	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	TSSC1--RP11-603J24.7	3	0	TSSC1	13955	chr2:3217974:-	RP11-603J24.7	24853	chr12:56374412:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,RP11-603J24.7->chr12:56374216-56374819:-	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	GATAD2B--NUP210L	2	2	GATAD2B	1243	chr1:153895209:-	NUP210L	26156	chr1:154108448:-	ONLY_REF_SPLICE	NO	3	7	0.57	0.36	0.0367	0.0367	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	COV644_OVARY	0.36	0.57	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	BAZ1B--KIAA0368	2	0	BAZ1B	16687	chr7:72873866:-	KIAA0368	51964	chr9:114170952:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-,KIAA0368->KIAA0368,chr9:114122972-114247025:-	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	CD63--CTNNA1	2	0	CD63	3818	chr12:56120674:-	CTNNA1	20562	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	CD63->CD63_molecule,chr12:56119107-56123491:-,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	CFL1--BSDC1	2	0	CFL1	6251	chr11:65623406:-	BSDC1	21826	chr1:32844440:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	CFL1->chr11:65590493-65629497:-,cofilin_1,BSDC1->BSD_domain_containing_1,chr1:32830704-32860332:-	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	CHFR--FOCAD	2	0	CHFR	2239	chr12:133522207:-	FOCAD	66294	chr9:20907149:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,FOCAD->chr9:20658308-20995954:+,focadhesin	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	CHM--CHMP1A	2	0	CHM	2383	chrX:85282495:-	CHMP1A	31859	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	CHM->CHM,_Rab_escort_protein_1,chrX:85116185-85302566:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	GATAD2B--NUP210L	1	4	GATAD2B	1243	chr1:153895209:-	NUP210L	22778	chr1:154114000:-	ONLY_REF_SPLICE	NO	3	0	0.62	1	0.0184	0.0734	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	COV644_OVARY	0.62	1	0.0918	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	GSTCD--AIMP1	2	0	GSTCD	7953	chr4:106650656:+	AIMP1	29563	chr4:107268683:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	GSTCD->chr4:106629935-106768885:+,glutathione_S-transferase_C-terminal_domain_containing,AIMP1->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_1,chr4:107236701-107270383:+	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	HDAC9--DTNBP1	2	0	HDAC9	16243	chr7:18549069:+	DTNBP1	62731	chr6:15638035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	HDAC9->chr7:18126572-19042039:+,histone_deacetylase_9,DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	JTB--HDAC3	2	0	JTB	2863	chr1:153948302:-	HDAC3	13917	chr5:141005850:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,HDAC3->Oncogene{Bushman},chr5:141000443-141016437:-,histone_deacetylase_3	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	MPHOSPH10--DDX17	2	0	MPHOSPH10	5574	chr2:71365761:+	DDX17	18592	chr22:38897285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	MPHOSPH10->M-phase_phosphoprotein_10,chr2:71357444-71377231:+,DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	NHLRC3--MLLT4	2	0	NHLRC3	2406	chr13:39613848:+	MLLT4	15958	chr6:168271063:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	NHLRC3->NHL_repeat_containing_3,chr13:39612443-39624246:+,MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	NUP210L--S100A8	2	0	NUP210L	18070	chr1:154061897:-	S100A8	44326	chr1:153363033:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like,S100A8->Oncogene{Bushman},S100_calcium_binding_protein_A8,chr1:153362508-153363664:-	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	RAB21--MARVELD2	2	0	RAB21	1415	chr12:72149068:+	MARVELD2	17291	chr5:68715198:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	RAB21->RAB21,_member_RAS_oncogene_family,chr12:72148654-72184699:+,MARVELD2->MARVEL_domain_containing_2,chr5:68710939-68740157:+	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	18	0	TRUE	ACH-000608
COV644_OVARY	ZC3H7A--ADCY9	2	0	ZC3H7A	1144	chr16:11890980:-	ADCY9	35264	chr16:4043511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	GATAD2B--NUP210L	1	2	GATAD2B	1243	chr1:153895209:-	NUP210L	28384	chr1:154099893:-	ONLY_REF_SPLICE	YES	3	15	0.5	0.17	0.0184	0.0367	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	COV644_OVARY	0.17	0.5	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
SNU475_LIVER	TMED8--CTD-2231H16.1	13	5	TMED8	1174	chr14:77843279:-	CTD-2231H16.1	17124	chr5:113366:+	ONLY_REF_SPLICE	YES	16	2	0.53	0.9	0.1532	0.0589	TMED8->chr14:77801364-77843452:-,transmembrane_p24_trafficking_protein_family_member_8,CTD-2231H16.1->chr5:92266-139978:+	SNU475_LIVER	0.53	0.9	0.2121	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	PTPRK--MBTD1	7	2	PTPRK	18707	chr6:128410835:-	MBTD1	56767	chr17:49302570:-	ONLY_REF_SPLICE	YES	55	3	0.14	0.75	0.0825	0.0236	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	SNU475_LIVER	0.14	0.75	0.1061	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	SEPT11--SHROOM3	5	1	SEPT11	1228	chr4:77871083:+	SHROOM3	46987	chr4:77670170:+	ONLY_REF_SPLICE	YES	62	6	0.09	0.5	0.0589	0.0118	{Klijn_CCL:Liver=1},SEPT11->chr4:77870856-77961537:+,septin_11,SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3	SNU475_LIVER	0.09	0.5	0.0707	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	FLNA--GSTP1	5	0	FLNA	6818	chrX:153593263:-	GSTP1	24992	chr11:67351283:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0589	0	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},FLNA->chrX:153576892-153603006:-,filamin_A,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	SNU475_LIVER	1	1	0.0589	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	AP003900.6--AC008132.1	3	2	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0.0236	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SNU475_LIVER	1	1	0.059	TRUE	0	0	0	16	0	TRUE	ACH-000422
SNU475_LIVER	AP003900.6--AC008132.1	3	1	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0354	0.0118	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SNU475_LIVER	0.67	1	0.0472	TRUE	0	0	0	13	0	TRUE	ACH-000422
SNU475_LIVER	SEPT11--SHROOM3	2	1	SEPT11	1228	chr4:77871083:+	SHROOM3	42617	chr4:77659914:+	ONLY_REF_SPLICE	YES	62	7	0.05	0.3	0.0236	0.0118	{Klijn_CCL:Liver=1},SEPT11->chr4:77870856-77961537:+,septin_11,SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3	SNU475_LIVER	0.05	0.3	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	AGBL3--PAXBP1	2	0	AGBL3	1194	chr7:134671452:+	PAXBP1	44161	chr21:34123529:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AGBL3->ATP/GTP_binding_protein-like_3,chr7:134671259-134832715:+,PAXBP1->PAX3_and_PAX7_binding_protein_1,chr21:34106210-34144169:-	SNU475_LIVER	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	AP003900.6--AC008132.1	1	4	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0118	0.0471	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SNU475_LIVER	0.83	1	0.0589	TRUE	0	0	0	11	0	TRUE	ACH-000422
SNU475_LIVER	C19orf55--ZNF618	2	0	C19orf55	4308	chr19:36253378:+	ZNF618	29798	chr9:116798580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C19orf55->chr19:36249044-36261930:+,ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618	SNU475_LIVER	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	HMGA2--LUM	2	0	HMGA2	5315	chr12:66232349:+	LUM	30462	chr12:91498096:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	SNU475_LIVER	1	1	0.0236	TRUE	0	0	0	8	0	TRUE	ACH-000422
SNU475_LIVER	PTPRK--FUS	2	0	PTPRK	5969	chr6:128718711:-	FUS	60253	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SNU475_LIVER	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	AP003900.6--AC008132.1	1	2	AP003900.6	2187	chr21:11172043:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0118	0.0236	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SNU475_LIVER	0.75	1	0.0354	TRUE	0	0	0	3	0	TRUE	ACH-000422
ABC1_LUNG	RFC2--EIF4H	38	18	RFC2	1174	chr7:73668601:-	EIF4H	22338	chr7:73609071:+	ONLY_REF_SPLICE	YES	178	954	0.24	0.06	0.4831	0.2288	LOCAL_INVERSION:-:+:[34398],RFC2->chr7:73645829-73668774:-,replication_factor_C_subunit_2,EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H	ABC1_LUNG	0.06	0.24	0.7119	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	PRKAR1B--KIAA0895	40	3	PRKAR1B	1441	chr7:766847:-	KIAA0895	35640	chr7:36370688:-	ONLY_REF_SPLICE	YES	0	118	1	0.27	0.5085	0.0381	PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta,KIAA0895->KIAA0895,chr7:36363830-36429734:-	ABC1_LUNG	0.27	1	0.5466	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	TRMT11--NCOA7	24	31	TRMT11	13234	chr6:126342426:+	NCOA7	35995	chr6:126236479:+	ONLY_REF_SPLICE	YES	62	14	0.47	0.8	0.3051	0.3941	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[55310],TRMT11->chr6:126307576-126360422:+,tRNA_methyltransferase_11_homolog,NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7	ABC1_LUNG	0.47	0.8	0.6992	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	PRKAR1B--KIAA0895	29	0	PRKAR1B	1061	chr7:767227:-	KIAA0895	35640	chr7:36370688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3686	0	PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta,KIAA0895->KIAA0895,chr7:36363830-36429734:-	ABC1_LUNG	1	1	0.3686	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	ZNF251--RP11-161M6.3	6	5	ZNF251	3735	chr8:145979068:-	RP11-161M6.3	12246	chr16:1047810:-	INCL_NON_REF_SPLICE	YES	49	1	0.18	0.92	0.0763	0.0636	ZNF251->chr8:145946298-145981802:-,zinc_finger_protein_251,RP11-161M6.3->chr16:1041148-1050926:-	ABC1_LUNG	0.18	0.92	0.1399	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	DEPDC5--SUZ12	5	5	DEPDC5	26466	chr22:32218776:+	SUZ12	54262	chr17:30267305:+	ONLY_REF_SPLICE	YES	7	151	0.59	0.06	0.0636	0.0636	DEPDC5->DEP_domain_containing_5,chr22:32149944-32303012:+,SUZ12->Oncogene{Bushman},SUZ12_polycomb_repressive_complex_2_subunit,chr17:30264037-30328064:+	ABC1_LUNG	0.06	0.59	0.1272	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	PMS2--ELMO1	5	1	PMS2	7663	chr7:6036957:-	ELMO1	26672	chr7:37382367:-	ONLY_REF_SPLICE	YES	47	0	0.11	1	0.0636	0.0127	PMS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},PMS1_homolog_2,_mismatch_repair_system_component,chr7:6012870-6048756:-,ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1	ABC1_LUNG	0.11	1	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	LRCH1--GRIA3	4	3	LRCH1	1536	chr13:47127838:+	GRIA3	32897	chrX:122319684:+	ONLY_REF_SPLICE	YES	36	0	0.16	1	0.0508	0.0381	LRCH1->chr13:47127303-47327175:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_1,GRIA3->chrX:122318006-122624766:+,glutamate_ionotropic_receptor_AMPA_type_subunit_3	ABC1_LUNG	0.16	1	0.0889	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	LRCH1--GRIA3	3	3	LRCH1	1536	chr13:47127838:+	GRIA3	36486	chrX:122387154:+	ONLY_REF_SPLICE	YES	36	0	0.14	1	0.0381	0.0381	LRCH1->chr13:47127303-47327175:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_1,GRIA3->chrX:122318006-122624766:+,glutamate_ionotropic_receptor_AMPA_type_subunit_3	ABC1_LUNG	0.14	1	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	ANXA2--NARG2	3	0	ANXA2	11842	chr15:60678227:-	NARG2	48568	chr15:60734744:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ABC1_LUNG	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	ANKMY2--BZW2	2	0	ANKMY2	1311	chr7:16685132:-	BZW2	20547	chr7:16705062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[314],ANKMY2->ankyrin_repeat_and_MYND_domain_containing_2,chr7:16639401-16685442:-,BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+	ABC1_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	SLC25A22--POLR2L	2	0	SLC25A22	1100	chr11:798217:-	POLR2L	12725	chr11:840480:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:-:[39040],SLC25A22->chr11:790475-798316:-,solute_carrier_family_25_member_22,POLR2L->chr11:837356-842545:-,polymerase_(RNA)_II_subunit_L	ABC1_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	ZMYND11--LARP4B	2	0	ZMYND11	2095	chr10:181499:+	LARP4B	27663	chr10:931700:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11,LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-	ABC1_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	SDK1--GRB10	1	1	SDK1	1437	chr7:3341516:+	GRB10	80394	chr7:50771605:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0127	0.0127	SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1,GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10	ABC1_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	SPIDR--RP11-401H2.1	1	1	SPIDR	16312	chr8:48353104:+	RP11-401H2.1	40992	chr8:52233280:+	ONLY_REF_SPLICE	YES	52	0	0.04	1	0.0127	0.0127	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,RP11-401H2.1->chr8:52170248-52233678:+	ABC1_LUNG	0.04	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000528
LS411N_LARGE_INTESTINE	TNS3--CDK14	27	17	TNS3	18775	chr7:47454692:-	CDK14	64739	chr7:90492490:+	ONLY_REF_SPLICE	YES	37	0	0.54	1	0.3102	0.1953	TNS3->chr7:47314752-47622156:-,tensin_3,CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14	LS411N_LARGE_INTESTINE	0.54	1	0.5055	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	NFAT5--SNTB2	20	14	NFAT5	3335	chr16:69602451:+	SNTB2	38132	chr16:69293953:+	ONLY_REF_SPLICE	YES	11	39	0.76	0.47	0.2297	0.1608	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2	LS411N_LARGE_INTESTINE	0.47	0.76	0.3905	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	LSM14A--RBBP7	18	0	LSM14A	2296	chr19:34685418:+	RBBP7	24373	chrX:16870986:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2068	0	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,RBBP7->Oncogene{Bushman},chrX:16857406-16888537:-,retinoblastoma_binding_protein_7	LS411N_LARGE_INTESTINE	1	1	0.2068	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	NFAT5--SNTB2	13	8	NFAT5	2281	chr16:69600277:+	SNTB2	38132	chr16:69293953:+	ONLY_REF_SPLICE	YES	10	39	0.68	0.35	0.1493	0.0919	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2	LS411N_LARGE_INTESTINE	0.35	0.68	0.2412	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	ZNF148--SNX4	10	11	ZNF148	13531	chr3:124996570:-	SNX4	30443	chr3:125208307:-	ONLY_REF_SPLICE	YES	60	89	0.26	0.19	0.1149	0.1264	LOCAL_REARRANGEMENT:-:[71297],ZNF148->chr3:124944405-125094198:-,zinc_finger_protein_148,SNX4->chr3:125165495-125239041:-,sorting_nexin_4	LS411N_LARGE_INTESTINE	0.19	0.26	0.2413	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	ZNRF3--HSCB	10	6	ZNRF3	3718	chr22:29383189:+	HSCB	21101	chr22:29139870:+	ONLY_REF_SPLICE	YES	58	76	0.22	0.17	0.1149	0.0689	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,HSCB->HscB_mitochondrial_iron-sulfur_cluster_co-chaperone,chr22:29138019-29153503:+	LS411N_LARGE_INTESTINE	0.17	0.22	0.1838	TRUE	0	1	0	1	1	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	FGGY--AGAP1	8	5	FGGY	11192	chr1:59844509:+	AGAP1	58570	chr2:236945205:+	ONLY_REF_SPLICE	YES	29	42	0.31	0.24	0.0919	0.0574	FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	LS411N_LARGE_INTESTINE	0.24	0.31	0.1493	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	ZNRF3--HSCB	8	3	ZNRF3	3718	chr22:29383189:+	HSCB	24228	chr22:29147229:+	ONLY_REF_SPLICE	YES	58	51	0.16	0.18	0.0919	0.0345	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,HSCB->HscB_mitochondrial_iron-sulfur_cluster_co-chaperone,chr22:29138019-29153503:+	LS411N_LARGE_INTESTINE	0.16	0.18	0.1264	TRUE	0	1	0	1	1	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	AL136376.1--RPS28	6	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LS411N_LARGE_INTESTINE	1	1	0.0689	TRUE	0	0	0	12	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	GPHN--RP11-783L4.1	5	0	GPHN	2185	chr14:66975309:+	RP11-783L4.1	42058	chr14:66590379:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0574	0	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,RP11-783L4.1->chr14:66578299-66592565:+	LS411N_LARGE_INTESTINE	1	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	DAGLA--RP11-286N22.10	4	3	DAGLA	1072	chr11:61447976:+	RP11-286N22.10	24589	chr11:61267235:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0459	0.0345	DAGLA->chr11:61447905-61514473:+,diacylglycerol_lipase_alpha,RP11-286N22.10->chr11:61263912-61267548:+	LS411N_LARGE_INTESTINE	0.64	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	FADS2--TMEM216	4	2	FADS2	1049	chr11:61560500:+	TMEM216	31282	chr11:61165246:+	ONLY_REF_SPLICE	YES	1	130	0.86	0.04	0.0459	0.023	FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,TMEM216->chr11:61159159-61166335:+,transmembrane_protein_216	LS411N_LARGE_INTESTINE	0.04	0.86	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	FAR2--OVCH1	4	1	FAR2	16797	chr12:29474857:+	OVCH1	52926	chr12:29576231:-	ONLY_REF_SPLICE	YES	68	0	0.07	1	0.0459	0.0115	LOCAL_INVERSION:+:-:[71494],FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2,OVCH1->chr12:29565407-29650619:-,ovochymase_1	LS411N_LARGE_INTESTINE	0.07	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	NFAT5--SNTB2	2	5	NFAT5	2281	chr16:69600277:+	SNTB2	38253	chr16:69294074:+	ONLY_REF_SPLICE	YES	10	33	0.41	0.17	0.023	0.0574	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2	LS411N_LARGE_INTESTINE	0.17	0.41	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	FGGY--AGAP1	1	5	FGGY	11192	chr1:59844509:+	AGAP1	57495	chr2:236923449:+	ONLY_REF_SPLICE	YES	29	50	0.17	0.11	0.0115	0.0574	FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	LS411N_LARGE_INTESTINE	0.11	0.17	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	NFAT5--SNTB2	1	5	NFAT5	3335	chr16:69602451:+	SNTB2	38253	chr16:69294074:+	ONLY_REF_SPLICE	YES	11	33	0.35	0.15	0.0115	0.0574	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2	LS411N_LARGE_INTESTINE	0.15	0.35	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	C11orf68--ADRBK1	2	0	C11orf68	1208	chr11:65686381:-	ADRBK1	10597	chr11:67046671:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	CDYL--ZNF638	2	0	CDYL	6988	chr6:4777041:+	ZNF638	66475	chr2:71658457:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	CDYL->chr6:4706393-4955785:+,chromodomain_protein,_Y-like,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	DEPDC1B--RYK	2	0	DEPDC1B	4088	chr5:59982789:-	RYK	27249	chr3:133914026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,RYK->chr3:133784147-133969689:-,receptor-like_tyrosine_kinase	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	DNAJC24--IMMP1L	2	0	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	4	0	9	1	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	FAM211A--XKRX	2	0	FAM211A	1409	chr17:16395059:-	XKRX	15242	chrX:100170072:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	FAM211A->chr17:16344891-16395467:-,XKRX->XK_related,_X-linked,chrX:100168431-100184422:-	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	PDS5B--GPALPP1	2	0	PDS5B	1167	chr13:33160730:+	GPALPP1	50713	chr13:45578440:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,GPALPP1->GPALPP_motifs_containing_1,chr13:45563687-45607746:+	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	RP5-940J5.9--CYSTM1	2	0	RP5-940J5.9	1230	chr12:6647307:-	CYSTM1	6222	chr5:139574031:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	RP5-940J5.9->chr12:6646960-6647536:-,CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	RPRD1A--PDE3B	2	0	RPRD1A	10586	chr18:33606863:-	PDE3B	34720	chr11:14810652:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	SFXN4--NUP62CL	2	0	SFXN4	3607	chr10:120921852:-	NUP62CL	21456	chrX:106396733:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	SFXN4->chr10:120900279-120925179:-,sideroflexin_4,NUP62CL->chrX:106366657-106449670:-,nucleoporin_62kDa_C-terminal_like	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
CW2_LARGE_INTESTINE	RPP14--CA12	90	0	RPP14	10601	chr3:58306868:+	CA12	32006	chr15:63616878:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8713	0	RPP14->chr3:58291974-58310422:+,chr3:58303341-58303847:+,ribonuclease_P/MRP_subunit_p14,CA12->carbonic_anhydrase_12,chr15:63613577-63674360:-	CW2_LARGE_INTESTINE	1	1	0.8713	TRUE	0	0	0	1	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	PSMB10--LCAT	55	51	PSMB10	3519	chr16:67968472:-	LCAT	10240	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5325	0.4938	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	CW2_LARGE_INTESTINE	1	1	1.0263	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	PSMB10--LCAT	56	32	PSMB10	3291	chr16:67968700:-	LCAT	10240	chr16:67974381:-	ONLY_REF_SPLICE	YES	143	0	0.38	1	0.5422	0.3098	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	CW2_LARGE_INTESTINE	0.38	1	0.852	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	PSMB10--LCAT	16	57	PSMB10	3519	chr16:67968472:-	LCAT	9887	chr16:67974734:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1549	0.5518	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	CW2_LARGE_INTESTINE	1	1	0.7067	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	PSMB10--LCAT	14	51	PSMB10	3524	chr16:67968467:-	LCAT	10240	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1355	0.4938	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	CW2_LARGE_INTESTINE	1	1	0.6293	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	PSMB10--LCAT	6	37	PSMB10	3291	chr16:67968700:-	LCAT	9887	chr16:67974734:-	ONLY_REF_SPLICE	YES	143	0	0.23	1	0.0581	0.3582	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	CW2_LARGE_INTESTINE	0.23	1	0.4163	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	PSMB10--LCAT	11	5	PSMB10	2792	chr16:67969199:-	LCAT	10240	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	252	0	0.06	1	0.1065	0.0484	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	CW2_LARGE_INTESTINE	0.06	1	0.1549	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	RPS25--FOXR1	3	0	RPS25	1410	chr11:118888992:-	FOXR1	7849	chr11:118849492:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	LOCAL_INVERSION:-:+:[34421],RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	CW2_LARGE_INTESTINE	1	1	0.029	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	WSB1--STXBP4	3	0	WSB1	7698	chr17:25633908:+	STXBP4	35641	chr17:53218671:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,STXBP4->chr17:53046088-53241646:+,syntaxin_binding_protein_4	CW2_LARGE_INTESTINE	1	1	0.029	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	DANCR--ITGB3BP	2	0	DANCR	1530	chr4:53579126:+	ITGB3BP	18619	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	CW2_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	9	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	27609	chr13:114193672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	CW2_LARGE_INTESTINE	1	1	0.0194	TRUE	0	4	1	3	2	TRUE	ACH-000998
CW2_LARGE_INTESTINE	PCBP2--DYNLT1	2	0	PCBP2	7833	chr12:53849785:+	DYNLT1	29248	chr6:159058926:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	CW2_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	CW2_LARGE_INTESTINE	1	1	0.0194	TRUE	1	10	0	18	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	TET2--PPA2	2	0	TET2	2105	chr4:106068136:+	PPA2	45971	chr4:106307793:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[89261],TET2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:106067032-106200973:+,tet_methylcytosine_dioxygenase_2,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	CW2_LARGE_INTESTINE	1	1	0.0194	TRUE	1	0	0	1	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	ANK3--CHPT1	1	1	ANK3	1228	chr10:62493021:-	CHPT1	76687	chr12:102107868:+	ONLY_REF_SPLICE	NO	13	23	0.13	0.08	0.0097	0.0097	ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-,CHPT1->choline_phosphotransferase_1,chr12:102090725-102137918:+	CW2_LARGE_INTESTINE	0.08	0.13	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000998
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	335	3	ANP32B	9252	chr9:100774754:+	NCL	18735	chr2:232326361:-	INCL_NON_REF_SPLICE	YES	772	2714	0.3	0.11	3.6315	0.0325	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.3	3.664	TRUE	0	0	0	7	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALG9--SIK2	137	55	ALG9	12534	chr11:111724103:-	SIK2	37587	chr11:111558725:+	ONLY_REF_SPLICE	YES	320	86	0.38	0.69	1.4851	0.5962	{Klijn_CCL:Lymphoid=1},LOCAL_INVERSION:-,chr11:+:[51342],ALG9->ALG9,_alpha-1,2-mannosyltransferase,chr11:111652919-111742305:-,chr11:111657010-111750149:-,SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.69	2.0813	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU7--ANAPC10	117	14	DLEU7	6126	chr13:51286674:-	ANAPC10	10779	chr4:146019571:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2683	0.1518	DLEU7->chr13:51285144-51418075:-,deleted_in_lymphocytic_leukemia,_7,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.4201	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRMT10C--LIFR	89	19	TRMT10C	1142	chr3:101280847:+	LIFR	14109	chr5:38530768:-	ONLY_REF_SPLICE	YES	145	0	0.43	1	0.9648	0.206	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,LIFR->Oncogene{Bushman},chr5:38475065-38608456:-,leukemia_inhibitory_factor_receptor_alpha	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	1.1708	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIAT--CECR7	27	17	MIAT	11407	chr22:27064365:+	CECR7	24256	chr22:17525763:+	INCL_NON_REF_SPLICE	YES	53	3	0.45	0.94	0.2927	0.1843	HGNC_GENEFAM,MIAT->chr22:27042392-27072438:+,myocardial_infarction_associated_transcript_(non-protein_coding),CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.94	0.477	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SIK2--DDX10	17	5	SIK2	3489	chr11:111491126:+	DDX10	32973	chr11:108559663:+	ONLY_REF_SPLICE	YES	91	79	0.19	0.22	0.1843	0.0542	SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,DDX10->DEAD-box_helicase_10,Oncogene{Bushman},chr11:108535752-108811657:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.22	0.2385	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP11B--GOLGA8Q	13	8	ARHGAP11B	10906	chr15:30936905:+	GOLGA8Q	30316	chr15:30845995:+	ONLY_REF_SPLICE	YES	14	0	0.6	1	0.1409	0.0867	LOCAL_REARRANGEMENT:+:[61993],ARHGAP11B->Rho_GTPase_activating_protein_11B,chr15:30916697-31065196:+,GOLGA8Q->chr15:30844183-30854704:+,golgin_A8_family_member_Q	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.2276	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XBP1--TTC28	11	2	XBP1	1300	chr22:29196286:-	TTC28	13179	chr22:28702631:-	ONLY_REF_SPLICE	YES	70	5	0.16	0.72	0.1192	0.0217	XBP1->X-box_binding_protein_1,chr22:29190543-29196585:-,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.72	0.1409	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMYD4--BZRAP1-AS1	9	1	SMYD4	3432	chr17:1731155:-	BZRAP1-AS1	30743	chr17:56472267:+	ONLY_REF_SPLICE	YES	35	0	0.22	1	0.0976	0.0108	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,BZRAP1-AS1->BZRAP1_antisense_RNA_1,chr17:56402811-56493127:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.1084	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6KC1--KCNH1	7	5	RPS6KC1	8110	chr1:213303232:+	KCNH1	25348	chr1:211280719:-	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.0759	0.0542	{Klijn_CCL:Lymphoid=1},RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1,KCNH1->Oncogene{Bushman},chr1:210856555-211307457:-,potassium_voltage-gated_channel_subfamily_H_member_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf56--SPRR2F	6	6	C1orf56	2113	chr1:151021328:+	SPRR2F	9011	chr1:153085228:-	ONLY_REF_SPLICE	YES	13	0	0.48	1	0.065	0.065	C1orf56->chr1:151020216-151024462:+,chromosome_1_open_reading_frame_56,SPRR2F->chr1:153084590-153085991:-,small_proline_rich_protein_2F	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.13	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5--KHDC3L	6	4	KCNQ5	1796	chr6:73332315:+	KHDC3L	27908	chr6:74072440:+	INCL_NON_REF_SPLICE	YES	7	0	0.59	1	0.065	0.0434	KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5,KHDC3L->KH_domain_containing_3_like,_subcortical_maternal_complex_member,chr6:74072400-74073894:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.1084	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--GZMM	6	0	BSG	2405	chr19:572701:+	GZMM	14559	chr19:547280:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[21378],BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GZMM->chr19:544034-549919:+,granzyme_M	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.065	TRUE	0	0	0	5	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf56--SPRR2F	3	9	C1orf56	3745	chr1:151022960:+	SPRR2F	9011	chr1:153085228:-	ONLY_REF_SPLICE	YES	8	0	0.6	1	0.0325	0.0976	C1orf56->chr1:151020216-151024462:+,chromosome_1_open_reading_frame_56,SPRR2F->chr1:153084590-153085991:-,small_proline_rich_protein_2F	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP11B--GOLGA8Q	4	4	ARHGAP11B	8746	chr15:30931023:+	GOLGA8Q	30316	chr15:30845995:+	ONLY_REF_SPLICE	YES	15	0	0.35	1	0.0434	0.0434	LOCAL_REARRANGEMENT:+:[61993],ARHGAP11B->Rho_GTPase_activating_protein_11B,chr15:30916697-31065196:+,GOLGA8Q->chr15:30844183-30854704:+,golgin_A8_family_member_Q	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	0.0868	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIAT--CECR7	4	2	MIAT	9942	chr22:27062900:+	CECR7	24256	chr22:17525763:+	ONLY_REF_SPLICE	YES	43	3	0.12	0.67	0.0434	0.0217	HGNC_GENEFAM,MIAT->chr22:27042392-27072438:+,myocardial_infarction_associated_transcript_(non-protein_coding),CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.67	0.0651	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMYD4--BZRAP1-AS1	3	0	SMYD4	3432	chr17:1731155:-	BZRAP1-AS1	32133	chr17:56493112:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,BZRAP1-AS1->BZRAP1_antisense_RNA_1,chr17:56402811-56493127:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG3--GNAS	3	0	SNHG3	3181	chr1:28834672:+	GNAS	24750	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0325	TRUE	0	0	0	2	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--NPM1	3	0	TXNDC5	2343	chr6:7910752:-	NPM1	18924	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0325	TRUE	0	0	0	5	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C7orf50--MAD1L1	2	3	C7orf50	3078	chr7:1166893:-	MAD1L1	55558	chr7:1855864:-	ONLY_REF_SPLICE	YES	190	112	0.03	0.04	0.0217	0.0325	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.0542	TRUE	0	4	0	5	2	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CELF1--PGBD2	2	0	CELF1	22397	chr11:47493743:-	PGBD2	35337	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	1	3	0	10	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6-AS1--RASA3	2	0	GAS6-AS1	1062	chr13:114518664:+	RASA3	14263	chr13:114795363:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6-AS1--TFDP1	2	0	GAS6-AS1	1062	chr13:114518664:+	TFDP1	11094	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	4	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IFNG-AS1--RAP1B	2	0	IFNG-AS1	1135	chr12:68383359:+	RAP1B	17582	chr12:69042479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	IFNG-AS1->IFNG_antisense_RNA_1,chr12:68383225-68628466:+,RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFV3--U2AF1	2	0	NDUFV3	5809	chr21:44317157:+	U2AF1	26761	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	5	0	8	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLCO4A1--EEF1D	2	0	SLCO4A1	1109	chr20:61273905:+	EEF1D	29187	chr8:144669019:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	2	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMYD4--BZRAP1-AS1	2	0	SMYD4	3432	chr17:1731155:-	BZRAP1-AS1	31848	chr17:56492827:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,BZRAP1-AS1->BZRAP1_antisense_RNA_1,chr17:56402811-56493127:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG3--HSPA9	2	0	SNHG3	3181	chr1:28834672:+	HSPA9	17859	chr5:137895780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBRG4--COX4I1	2	0	TBRG4	1405	chr7:45151242:-	COX4I1	20671	chr16:85838543:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4,COX4I1->chr16:85832239-85840650:+,cytochrome_c_oxidase_subunit_4I1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC113189.5--EIF4A1	1	1	AC113189.5	1155	chr17:7487236:-	EIF4A1	7664	chr17:7477578:+	ONLY_REF_SPLICE	YES	7	32	0.22	0.06	0.0108	0.0108	LOCAL_INVERSION:-:+:[2959],AC113189.5->chr17:7485282-7487390:-,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.22	0.0216	TRUE	0	0	0	2	0	TRUE	ACH-000838
NCIH2081_LUNG	UBE2E1--DAZL	224	161	UBE2E1	6001	chr3:23853001:+	DAZL	24752	chr3:16633655:-	ONLY_REF_SPLICE	YES	112	0	0.77	1	2.273	1.6337	UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like	NCIH2081_LUNG	0.77	1	3.9067	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ZNF852--LZTFL1	69	1	ZNF852	1084	chr3:44552045:-	LZTFL1	16119	chr3:45879543:-	ONLY_REF_SPLICE	YES	0	10	1	0.88	0.7002	0.0101	ZNF852->chr3:44540462-44552128:-,zinc_finger_protein_852,LZTFL1->chr3:45864808-45957534:-,leucine_zipper_transcription_factor_like_1	NCIH2081_LUNG	0.88	1	0.7103	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	UBE2E1--WNT7A	47	25	UBE2E1	6001	chr3:23853001:+	WNT7A	18291	chr3:13916670:-	ONLY_REF_SPLICE	YES	112	0	0.39	1	0.4769	0.2537	{Klijn_CCL:Lung=1},UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,WNT7A->Wnt_family_member_7A,chr3:13857755-13921618:-	NCIH2081_LUNG	0.39	1	0.7306	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-120D5.1--GS1-594A7.3	45	25	RP11-120D5.1	4510	chrX:11074056:-	GS1-594A7.3	16182	chrX:15639135:+	ONLY_REF_SPLICE	YES	3	0	0.96	1	0.4566	0.2537	RP11-120D5.1->chrX:10865996-11129261:-,GS1-594A7.3->chrX:15621004-15639607:+	NCIH2081_LUNG	0.96	1	0.7103	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	SDK2--WRAP53	48	12	SDK2	1065	chr17:71640164:-	WRAP53	56835	chr17:7591966:+	ONLY_REF_SPLICE	YES	14	30	0.81	0.67	0.4871	0.1218	SDK2->chr17:71330523-71640228:-,sidekick_cell_adhesion_molecule_2,WRAP53->Oncogene{Bushman},WD_repeat_containing_antisense_to_TP53,chr17:7589389-7606820:+	NCIH2081_LUNG	0.67	0.81	0.6089	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RFTN1--GPD1L	39	11	RFTN1	3399	chr3:16535232:-	GPD1L	32002	chr3:32200368:+	ONLY_REF_SPLICE	YES	33	60	0.6	0.45	0.3957	0.1116	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like	NCIH2081_LUNG	0.45	0.6	0.5073	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-268G12.3--HDHD1	33	14	RP11-268G12.3	5320	chrX:27177022:-	HDHD1	18229	chrX:6968513:-	ONLY_REF_SPLICE	YES	5	12	0.9	0.8	0.3349	0.1421	RP11-268G12.3->chrX:27061024-27194415:-,HDHD1->chrX:6966961-7066231:-	NCIH2081_LUNG	0.8	0.9	0.477	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	LRRFIP2--NEK10	31	7	LRRFIP2	4142	chr3:37216030:-	NEK10	84367	chr3:27161359:-	ONLY_REF_SPLICE	YES	27	0	0.58	1	0.3146	0.071	LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2,NEK10->NIMA_related_kinase_10,chr3:27151576-27410951:-	NCIH2081_LUNG	0.58	1	0.3856	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	UBE2E1--DAZL	9	73	UBE2E1	2519	chr3:23848912:+	DAZL	24752	chr3:16633655:-	ONLY_REF_SPLICE	YES	78	0	0.51	1	0.0913	0.7407	UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like	NCIH2081_LUNG	0.51	1	0.832	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CMTM8--TRANK1	23	10	CMTM8	1441	chr3:32280611:+	TRANK1	9510	chr3:36949945:-	INCL_NON_REF_SPLICE	YES	16	0	0.67	1	0.2334	0.1015	CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,TRANK1->chr3:36868311-36986548:-,tetratricopeptide_repeat_and_ankyrin_repeat_containing_1	NCIH2081_LUNG	0.67	1	0.3349	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	HDHD1--RP11-268G12.1	22	8	HDHD1	6377	chrX:6995261:-	RP11-268G12.1	18357	chrX:27354610:-	ONLY_REF_SPLICE	YES	11	7	0.73	0.81	0.2232	0.0812	HDHD1->chrX:6966961-7066231:-,RP11-268G12.1->chrX:27193037-27417114:-	NCIH2081_LUNG	0.73	0.81	0.3044	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	GPD1L--EDEM1	20	12	GPD1L	6700	chr3:32188226:+	EDEM1	29037	chr3:5255004:+	ONLY_REF_SPLICE	YES	46	27	0.41	0.54	0.2029	0.1218	{Klijn_CCL:Lung=1},GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like,EDEM1->ER_degradation_enhancing_alpha-mannosidase_like_protein_1,chr3:5229331-5261642:+	NCIH2081_LUNG	0.41	0.54	0.3247	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-120D5.1--GS1-594A7.3	18	19	RP11-120D5.1	2349	chrX:11125021:-	GS1-594A7.3	16182	chrX:15639135:+	ONLY_REF_SPLICE	YES	7	0	0.84	1	0.1826	0.1928	RP11-120D5.1->chrX:10865996-11129261:-,GS1-594A7.3->chrX:15621004-15639607:+	NCIH2081_LUNG	0.84	1	0.3754	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MAST2--DNAJC16	21	4	MAST2	9343	chr1:46425149:+	DNAJC16	35608	chr1:15860732:+	ONLY_REF_SPLICE	YES	27	5	0.48	0.83	0.2131	0.0406	MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2,DNAJC16->DnaJ_heat_shock_protein_family_(Hsp40)_member_C16,chr1:15853308-15918874:+	NCIH2081_LUNG	0.48	0.83	0.2537	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	LRP8--HSPG2	17	10	LRP8	21889	chr1:53716362:-	HSPG2	29722	chr1:22222803:-	ONLY_REF_SPLICE	YES	44	1	0.38	0.96	0.1725	0.1015	{Klijn_CCL:Lung=1},LRP8->LDL_receptor_related_protein_8,chr1:53711217-53793742:-,HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2	NCIH2081_LUNG	0.38	0.96	0.274	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	UBE2E1--DAZL	5	58	UBE2E1	6001	chr3:23853001:+	DAZL	25851	chr3:16630220:-	ONLY_REF_SPLICE	YES	112	12	0.36	0.84	0.0507	0.5885	UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like	NCIH2081_LUNG	0.36	0.84	0.6392	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	SACM1L--TRAK1	17	5	SACM1L	15336	chr3:45773643:+	TRAK1	35739	chr3:42218306:+	ONLY_REF_SPLICE	YES	49	32	0.31	0.41	0.1725	0.0507	SACM1L->SAC1_suppressor_of_actin_mutations_1-like_(yeast),chr3:45730548-45786916:+,TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1	NCIH2081_LUNG	0.31	0.41	0.2232	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TBC1D5--CAPN7	15	6	TBC1D5	13947	chr3:17664140:-	CAPN7	56609	chr3:15253611:+	ONLY_REF_SPLICE	YES	16	20	0.57	0.51	0.1522	0.0609	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,CAPN7->calpain_7,chr3:15247659-15294425:+	NCIH2081_LUNG	0.51	0.57	0.2131	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CNOT10--ZNF385D-AS2	11	13	CNOT10	18210	chr3:32778982:+	ZNF385D-AS2	32481	chr3:22000324:+	ONLY_REF_SPLICE	YES	49	0	0.33	1	0.1116	0.1319	CNOT10->CCR4-NOT_transcription_complex_subunit_10,chr3:32726637-32815367:+,ZNF385D-AS2->ZNF385D_antisense_RNA_2,chr3:21984058-22021320:+	NCIH2081_LUNG	0.33	1	0.2435	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-120D5.1--GS1-594A7.3	7	29	RP11-120D5.1	5563	chrX:11056723:-	GS1-594A7.3	16182	chrX:15639135:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.071	0.2943	RP11-120D5.1->chrX:10865996-11129261:-,GS1-594A7.3->chrX:15621004-15639607:+	NCIH2081_LUNG	0.95	1	0.3653	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	AC144521.1--RBMS3	13	4	AC144521.1	12647	chr3:18568818:+	RBMS3	50285	chr3:29938870:+	ONLY_REF_SPLICE	YES	14	0	0.55	1	0.1319	0.0406	AC144521.1->chr3:18486516-18959184:+,RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+	NCIH2081_LUNG	0.55	1	0.1725	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	PLCL2--PRSS45	13	3	PLCL2	2852	chr3:16926865:+	PRSS45	19606	chr3:46798119:-	ONLY_REF_SPLICE	YES	4	0	0.8	1	0.1319	0.0304	PLCL2->chr3:16844159-17132086:+,phospholipase_C_like_2,PRSS45->chr3:46783582-46854048:-,protease,_serine_45	NCIH2081_LUNG	0.8	1	0.1623	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	UBE2E1--WNT7A	9	14	UBE2E1	2519	chr3:23848912:+	WNT7A	18291	chr3:13916670:-	ONLY_REF_SPLICE	YES	78	0	0.23	1	0.0913	0.1421	{Klijn_CCL:Lung=1},UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,WNT7A->Wnt_family_member_7A,chr3:13857755-13921618:-	NCIH2081_LUNG	0.23	1	0.2334	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ZNF852--LZTFL1	12	1	ZNF852	1084	chr3:44552045:-	LZTFL1	17244	chr3:45877276:-	ONLY_REF_SPLICE	YES	0	33	1	0.28	0.1218	0.0101	ZNF852->chr3:44540462-44552128:-,zinc_finger_protein_852,LZTFL1->chr3:45864808-45957534:-,leucine_zipper_transcription_factor_like_1	NCIH2081_LUNG	0.28	1	0.1319	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TRANK1--ULK4	11	3	TRANK1	23409	chr3:36884113:-	ULK4	76581	chr3:41439755:-	ONLY_REF_SPLICE	YES	23	1	0.38	0.93	0.1116	0.0304	{Klijn_CCL:Lung=1},TRANK1->chr3:36868311-36986548:-,tetratricopeptide_repeat_and_ankyrin_repeat_containing_1,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	NCIH2081_LUNG	0.38	0.93	0.142	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	UBE2E2--NUP210	10	3	UBE2E2	3680	chr3:23258803:+	NUP210	15553	chr3:13441361:-	ONLY_REF_SPLICE	YES	20	190	0.39	0.06	0.1015	0.0304	{Klijn_CCL:Lung=1},UBE2E2->chr3:23244511-23633284:+,ubiquitin_conjugating_enzyme_E2_E2,NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa	NCIH2081_LUNG	0.06	0.39	0.1319	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RFTN1--PLCL2-AS1	9	5	RFTN1	9245	chr3:16475358:-	PLCL2-AS1	24764	chr3:17085680:-	INCL_NON_REF_SPLICE	YES	27	0	0.34	1	0.0913	0.0507	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PLCL2-AS1->PLCL2_antisense_RNA_1,chr3:17084234-17085684:-	NCIH2081_LUNG	0.34	1	0.142	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	HIGD1A--PLCL2	9	0	HIGD1A	3638	chr3:42827520:-	PLCL2	14598	chr3:17051166:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0913	0	HIGD1A->HIG1_hypoxia_inducible_domain_family_member_1A,chr3:42798669-42846023:-,PLCL2->chr3:16844159-17132086:+,phospholipase_C_like_2	NCIH2081_LUNG	1	1	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RFTN1--GPD1L	8	3	RFTN1	3399	chr3:16535232:-	GPD1L	32109	chr3:32200475:+	INCL_NON_REF_SPLICE	YES	33	71	0.25	0.13	0.0812	0.0304	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like	NCIH2081_LUNG	0.13	0.25	0.1116	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RFTN1--GPD1L	6	11	RFTN1	7325	chr3:16513468:-	GPD1L	32002	chr3:32200368:+	ONLY_REF_SPLICE	YES	32	60	0.35	0.22	0.0609	0.1116	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like	NCIH2081_LUNG	0.22	0.35	0.1725	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TBC1D5--CAPN7	6	4	TBC1D5	12746	chr3:17665341:-	CAPN7	56609	chr3:15253611:+	ONLY_REF_SPLICE	YES	17	20	0.37	0.33	0.0609	0.0406	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,CAPN7->calpain_7,chr3:15247659-15294425:+	NCIH2081_LUNG	0.33	0.37	0.1015	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CMC1--PLCL2	6	2	CMC1	1229	chr3:28283303:+	PLCL2	26372	chr3:17051166:+	ONLY_REF_SPLICE	YES	112	6	0.07	0.57	0.0609	0.0203	CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,PLCL2->chr3:16844159-17132086:+,phospholipase_C_like_2	NCIH2081_LUNG	0.07	0.57	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MKRN2--SCN10A	3	12	MKRN2	3474	chr3:12611751:+	SCN10A	30407	chr3:38766802:-	INCL_NON_REF_SPLICE	YES	69	0	0.18	1	0.0304	0.1218	MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,SCN10A->chr3:38738293-38835501:-,sodium_voltage-gated_channel_alpha_subunit_10	NCIH2081_LUNG	0.18	1	0.1522	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MKRN2--SCN10A	5	4	MKRN2	3474	chr3:12611751:+	SCN10A	32669	chr3:38763903:-	ONLY_REF_SPLICE	YES	69	4	0.12	0.69	0.0507	0.0406	MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,SCN10A->chr3:38738293-38835501:-,sodium_voltage-gated_channel_alpha_subunit_10	NCIH2081_LUNG	0.12	0.69	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ARHGAP35--YIF1B	5	3	ARHGAP35	5826	chr19:47440665:+	YIF1B	22702	chr19:38800283:-	ONLY_REF_SPLICE	YES	58	43	0.12	0.16	0.0507	0.0304	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-	NCIH2081_LUNG	0.12	0.16	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	DAZL--DLEC1	5	2	DAZL	10969	chr3:16633557:-	DLEC1	34725	chr3:38149075:+	ONLY_REF_SPLICE	YES	11	0	0.39	1	0.0507	0.0203	DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like,DLEC1->chr3:38080696-38165516:+,deleted_in_lung_and_esophageal_cancer_1	NCIH2081_LUNG	0.39	1	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	EDEM1--CNTN4	5	2	EDEM1	9873	chr3:5248958:+	CNTN4	34902	chr3:2861170:+	ONLY_REF_SPLICE	YES	25	7	0.22	0.5	0.0507	0.0203	EDEM1->ER_degradation_enhancing_alpha-mannosidase_like_protein_1,chr3:5229331-5261642:+,CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4	NCIH2081_LUNG	0.22	0.5	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CMTM7--OSBPL10	5	1	CMTM7	2569	chr3:32483505:+	OSBPL10	21067	chr3:31921322:-	ONLY_REF_SPLICE	YES	13	6	0.32	0.5	0.0507	0.0101	CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+,OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10	NCIH2081_LUNG	0.32	0.5	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CMTM7--OSBPL10	5	1	CMTM7	6139	chr3:32493965:+	OSBPL10	21067	chr3:31921322:-	ONLY_REF_SPLICE	YES	10	6	0.38	0.5	0.0507	0.0101	CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+,OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10	NCIH2081_LUNG	0.38	0.5	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	NUP210--MOBP	4	5	NUP210	17642	chr3:13399722:-	MOBP	47726	chr3:39540958:+	ONLY_REF_SPLICE	YES	144	0	0.06	1	0.0406	0.0507	NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa,MOBP->chr3:39508689-39570970:+,myelin-associated_oligodendrocyte_basic_protein	NCIH2081_LUNG	0.06	1	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CNTN4--SUMF1	5	0	CNTN4	1166	chr3:2140662:+	SUMF1	53988	chr3:4110429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0507	0	CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4,SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1	NCIH2081_LUNG	1	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	EIF4B--PTMA	5	0	EIF4B	4599	chr12:53412656:+	PTMA	22543	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	EIF4B->chr12:53399942-53435993:+,eukaryotic_translation_initiation_factor_4B,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH2081_LUNG	1	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CDKL5--RP11-40F8.2	4	2	CDKL5	4610	chrX:18528974:+	RP11-40F8.2	32676	chrX:22761460:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0406	0.0203	CDKL5->chrX:18443703-18671749:+,cyclin_dependent_kinase_like_5,RP11-40F8.2->chrX:22277914-23311263:-	NCIH2081_LUNG	0.86	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CNOT10--ZNF385D-AS2	1	14	CNOT10	18210	chr3:32778982:+	ZNF385D-AS2	31427	chr3:21998631:+	ONLY_REF_SPLICE	YES	49	0	0.23	1	0.0101	0.1421	CNOT10->CCR4-NOT_transcription_complex_subunit_10,chr3:32726637-32815367:+,ZNF385D-AS2->ZNF385D_antisense_RNA_2,chr3:21984058-22021320:+	NCIH2081_LUNG	0.23	1	0.1522	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MKRN2--SCN10A	3	6	MKRN2	3474	chr3:12611751:+	SCN10A	31545	chr3:38765044:-	ONLY_REF_SPLICE	YES	69	4	0.12	0.69	0.0304	0.0609	MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,SCN10A->chr3:38738293-38835501:-,sodium_voltage-gated_channel_alpha_subunit_10	NCIH2081_LUNG	0.12	0.69	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	LARS2--GRM7	4	1	LARS2	23618	chr3:45565600:+	GRM7	56107	chr3:7721736:+	ONLY_REF_SPLICE	YES	21	0	0.19	1	0.0406	0.0101	LARS2->chr3:45429998-45590913:+,leucyl-tRNA_synthetase_2,_mitochondrial,GRM7->chr3:6811688-7783215:+,glutamate_metabotropic_receptor_7	NCIH2081_LUNG	0.19	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	NUP210--MOBP	3	5	NUP210	17642	chr3:13399722:-	MOBP	49330	chr3:39543557:+	ONLY_REF_SPLICE	YES	144	0	0.05	1	0.0304	0.0507	NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa,MOBP->chr3:39508689-39570970:+,myelin-associated_oligodendrocyte_basic_protein	NCIH2081_LUNG	0.05	1	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	OXNAD1--UBE2E2	4	1	OXNAD1	4251	chr3:16313229:+	UBE2E2	21817	chr3:23250183:+	ONLY_REF_SPLICE	YES	22	51	0.19	0.09	0.0406	0.0101	OXNAD1->chr3:16306706-16391806:+,oxidoreductase_NAD_binding_domain_containing_1,UBE2E2->chr3:23244511-23633284:+,ubiquitin_conjugating_enzyme_E2_E2	NCIH2081_LUNG	0.09	0.19	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	AC123023.1--LHFPL4	4	0	AC123023.1	1065	chr3:34244800:+	LHFPL4	9534	chr3:9547887:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	AC123023.1->chr3:34244736-34310303:+,LHFPL4->chr3:9543481-9595486:-,lipoma_HMGIC_fusion_partner-like_4	NCIH2081_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	FANCD2--CMTM6	4	0	FANCD2	35472	chr3:10133936:+	CMTM6	48095	chr3:32533378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	{Klijn_CCL:Lung=1},FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+,CMTM6->CKLF_like_MARVEL_transmembrane_domain_containing_6,chr3:32522804-32544900:-	NCIH2081_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MKRN2--SCN10A	1	12	MKRN2	3474	chr3:12611751:+	SCN10A	30404	chr3:38766805:-	ONLY_REF_SPLICE	YES	69	0	0.16	1	0.0101	0.1218	MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,SCN10A->chr3:38738293-38835501:-,sodium_voltage-gated_channel_alpha_subunit_10	NCIH2081_LUNG	0.16	1	0.1319	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RFTN1--GPD1L	4	0	RFTN1	3399	chr3:16535232:-	GPD1L	32694	chr3:32201060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like	NCIH2081_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-40F8.2--PHEX	4	0	RP11-40F8.2	3343	chrX:23082155:-	PHEX	14235	chrX:22056587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	LOCAL_INVERSION:-:+:[8487],RP11-40F8.2->chrX:22277914-23311263:-,PHEX->chrX:22050559-22269427:+,phosphate_regulating_endopeptidase_homolog,_X-linked	NCIH2081_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	VPS26B--JAM3	4	0	VPS26B	1701	chr11:134095239:+	JAM3	18424	chr11:134009746:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	NUCLCLUST,LOCAL_REARRANGEMENT:+:[72643],VPS26B->VPS26_retromer_complex_component_B,chr11:134094539-134117686:+,JAM3->chr11:133938820-134021896:+,junctional_adhesion_molecule_3	NCIH2081_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	SACM1L--TRAK1	3	3	SACM1L	12787	chr3:45765035:+	TRAK1	35739	chr3:42218306:+	ONLY_REF_SPLICE	YES	53	32	0.1	0.16	0.0304	0.0304	SACM1L->SAC1_suppressor_of_actin_mutations_1-like_(yeast),chr3:45730548-45786916:+,TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1	NCIH2081_LUNG	0.1	0.16	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	IGSF21--LRP8	3	2	IGSF21	9186	chr1:18692191:+	LRP8	38780	chr1:53712728:-	ONLY_REF_SPLICE	YES	0	42	1	0.11	0.0304	0.0203	IGSF21->chr1:18434240-18704977:+,immunoglobin_superfamily_member_21,LRP8->LDL_receptor_related_protein_8,chr1:53711217-53793742:-	NCIH2081_LUNG	0.11	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CDKL5--RP11-40F8.2	3	1	CDKL5	4610	chrX:18528974:+	RP11-40F8.2	32681	chrX:22761455:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0304	0.0101	CDKL5->chrX:18443703-18671749:+,cyclin_dependent_kinase_like_5,RP11-40F8.2->chrX:22277914-23311263:-	NCIH2081_LUNG	0.8	1	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CNTN4--LRRFIP2	3	1	CNTN4	1166	chr3:2140662:+	LRRFIP2	51658	chr3:37190529:-	ONLY_REF_SPLICE	YES	8	24	0.33	0.14	0.0304	0.0101	CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	NCIH2081_LUNG	0.14	0.33	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TOPAZ1--STAC	3	1	TOPAZ1	21502	chr3:44364787:+	STAC	35405	chr3:36534643:+	ONLY_REF_SPLICE	YES	0	16	1	0.2	0.0304	0.0101	TOPAZ1->chr3:44283378-44373590:+,testis_and_ovary_specific_PAZ_domain_containing_1,STAC->SH3_and_cysteine_rich_domain,chr3:36421836-36589499:+	NCIH2081_LUNG	0.2	1	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ELF3--IPO9	3	0	ELF3	4774	chr1:201980846:+	IPO9	41297	chr1:201851404:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	ELF3->E74_like_ETS_transcription_factor_3,chr1:201977073-201986316:+,IPO9->chr1:201798269-201853422:+,importin_9	NCIH2081_LUNG	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RARB--NR1D2	3	0	RARB	5103	chr3:25502832:+	NR1D2	28045	chr3:24018714:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	HGNC_GENEFAM,PROTCLUST,RARB->Oncogene{Bushman},chr3:25215823-25639423:+,retinoic_acid_receptor_beta,NR1D2->chr3:23986751-24022109:+,nuclear_receptor_subfamily_1_group_D_member_2	NCIH2081_LUNG	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	SCML2--RP11-40F8.2	3	0	SCML2	6459	chrX:18338452:-	RP11-40F8.2	25381	chrX:23082238:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	SCML2->chrX:18257434-18372847:-,sex_comb_on_midleg-like_2_(Drosophila),RP11-40F8.2->chrX:22277914-23311263:-	NCIH2081_LUNG	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ZNF852--LZTFL1	2	4	ZNF852	2230	chr3:44544457:-	LZTFL1	16119	chr3:45879543:-	ONLY_REF_SPLICE	YES	8	10	0.43	0.38	0.0203	0.0406	ZNF852->chr3:44540462-44552128:-,zinc_finger_protein_852,LZTFL1->chr3:45864808-45957534:-,leucine_zipper_transcription_factor_like_1	NCIH2081_LUNG	0.38	0.43	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	AC144521.1--RBMS3	2	3	AC144521.1	12647	chr3:18568818:+	RBMS3	55040	chr3:29977577:+	ONLY_REF_SPLICE	YES	14	3	0.26	0.62	0.0203	0.0304	AC144521.1->chr3:18486516-18959184:+,RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+	NCIH2081_LUNG	0.26	0.62	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CMC1--PLCL2	2	3	CMC1	3625	chr3:28304871:+	PLCL2	26372	chr3:17051166:+	ONLY_REF_SPLICE	YES	111	6	0.04	0.45	0.0203	0.0304	CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,PLCL2->chr3:16844159-17132086:+,phospholipase_C_like_2	NCIH2081_LUNG	0.04	0.45	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CDKL5--RP11-40F8.2	2	2	CDKL5	4610	chrX:18528974:+	RP11-40F8.2	31585	chrX:22962265:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0203	0.0203	CDKL5->chrX:18443703-18671749:+,cyclin_dependent_kinase_like_5,RP11-40F8.2->chrX:22277914-23311263:-	NCIH2081_LUNG	0.8	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MAST2--DNAJC16	2	2	MAST2	5929	chr1:46348067:+	DNAJC16	35608	chr1:15860732:+	ONLY_REF_SPLICE	YES	58	5	0.06	0.44	0.0203	0.0203	MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2,DNAJC16->DnaJ_heat_shock_protein_family_(Hsp40)_member_C16,chr1:15853308-15918874:+	NCIH2081_LUNG	0.06	0.44	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TBC1D5--CAPN7	1	6	TBC1D5	13947	chr3:17664140:-	CAPN7	55488	chr3:15252309:+	ONLY_REF_SPLICE	YES	16	21	0.3	0.25	0.0101	0.0609	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,CAPN7->calpain_7,chr3:15247659-15294425:+	NCIH2081_LUNG	0.25	0.3	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TBC1D5--CAPN7	2	2	TBC1D5	2479	chr3:17783973:-	CAPN7	56609	chr3:15253611:+	ONLY_REF_SPLICE	YES	13	20	0.24	0.17	0.0203	0.0203	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,CAPN7->calpain_7,chr3:15247659-15294425:+	NCIH2081_LUNG	0.17	0.24	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	UBE2E1--DLEC1	2	2	UBE2E1	2519	chr3:23848912:+	DLEC1	32715	chr3:38149075:+	ONLY_REF_SPLICE	YES	78	0	0.05	1	0.0203	0.0203	UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,DLEC1->chr3:38080696-38165516:+,deleted_in_lung_and_esophageal_cancer_1	NCIH2081_LUNG	0.05	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CMTM7--OSBPL10	2	1	CMTM7	2569	chr3:32483505:+	OSBPL10	22492	chr3:31918004:-	ONLY_REF_SPLICE	NO	13	9	0.19	0.25	0.0203	0.0101	CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+,OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10	NCIH2081_LUNG	0.19	0.25	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MAST2--DNAJC16	1	5	MAST2	9343	chr1:46425149:+	DNAJC16	34423	chr1:15855583:+	ONLY_REF_SPLICE	YES	27	2	0.18	0.75	0.0101	0.0507	MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2,DNAJC16->DnaJ_heat_shock_protein_family_(Hsp40)_member_C16,chr1:15853308-15918874:+	NCIH2081_LUNG	0.18	0.75	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	PLCL2--PRSS45	2	1	PLCL2	2852	chr3:16926865:+	PRSS45	21587	chr3:46796138:-	ONLY_REF_SPLICE	YES	4	9	0.43	0.25	0.0203	0.0101	PLCL2->chr3:16844159-17132086:+,phospholipase_C_like_2,PRSS45->chr3:46783582-46854048:-,protease,_serine_45	NCIH2081_LUNG	0.25	0.43	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RARB--STT3B	2	1	RARB	7449	chr3:25542814:+	STT3B	19526	chr3:31617888:+	ONLY_REF_SPLICE	YES	2	30	0.6	0.09	0.0203	0.0101	RARB->Oncogene{Bushman},chr3:25215823-25639423:+,retinoic_acid_receptor_beta,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	NCIH2081_LUNG	0.09	0.6	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	UBE2E1--DLEC1	1	5	UBE2E1	6001	chr3:23853001:+	DLEC1	32715	chr3:38149075:+	ONLY_REF_SPLICE	YES	112	0	0.05	1	0.0101	0.0507	UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,DLEC1->chr3:38080696-38165516:+,deleted_in_lung_and_esophageal_cancer_1	NCIH2081_LUNG	0.05	1	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ZCWPW2--LRRC3B	2	1	ZCWPW2	6932	chr3:28476760:+	LRRC3B	28397	chr3:26751004:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0203	0.0101	ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2,LRRC3B->chr3:26664297-26752267:+,leucine_rich_repeat_containing_3B	NCIH2081_LUNG	0.75	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ABCC5--HDAC2	2	0	ABCC5	8141	chr3:183705558:-	HDAC2	53673	chr6:114270424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ABCC5->ATP_binding_cassette_subfamily_C_member_5,chr3:183637722-183735803:-,HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	AC027119.1--ZNF385D	2	0	AC027119.1	1674	chr3:6005202:+	ZNF385D	17283	chr3:21606176:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	AC027119.1->chr3:6004529-6165807:+,ZNF385D->chr3:21459915-22414812:-,zinc_finger_protein_385D	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	AC144521.1--RBMS3	1	4	AC144521.1	17342	chr3:18589685:+	RBMS3	50285	chr3:29938870:+	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0101	0.0406	AC144521.1->chr3:18486516-18959184:+,RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+	NCIH2081_LUNG	0.56	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ARHGEF18--MROH7	2	0	ARHGEF18	1135	chr19:7460133:+	MROH7	31296	chr1:55130840:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ARHGEF18->Rho/Rac_guanine_nucleotide_exchange_factor_18,chr19:7459999-7537363:+,MROH7->chr1:55107463-55175939:+,maestro_heat_like_repeat_family_member_7	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CALM2--DAZAP1	2	0	CALM2	1161	chr2:47403580:-	DAZAP1	18145	chr19:1416456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CALM2--GNAS	2	0	CALM2	1161	chr2:47403580:-	GNAS	30774	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=2,Pituitary=1},CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2081_LUNG	1	1	0.0203	TRUE	0	2	0	2	1	TRUE	ACH-000394
NCIH2081_LUNG	CSNK1E--DMC1	2	0	CSNK1E	3868	chr22:38757404:-	DMC1	36321	chr22:38917729:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-,DMC1->DNA_meiotic_recombinase_1,chr22:38914954-38966291:-	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	DBF4B--UBTF	2	0	DBF4B	2902	chr17:42800390:+	UBTF	23874	chr17:42295664:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+,UBTF->chr17:42282401-42298994:-,upstream_binding_transcription_factor,_RNA_polymerase_I	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	2	0	TRUE	ACH-000394
NCIH2081_LUNG	EZH2--CUL1	2	0	EZH2	1158	chr7:148581256:-	CUL1	26755	chr7:148427054:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_INVERSION:-:+:[6347],EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit,CUL1->Oncogene{Bushman},chr7:148395006-148498128:+,cullin_1	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	2	0	TRUE	ACH-000394
NCIH2081_LUNG	FOXJ3--RBM4	2	0	FOXJ3	1819	chr1:42800730:-	RBM4	26895	chr11:66407171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	HDHD1--RP11-268G12.1	1	4	HDHD1	6377	chrX:6995261:-	RP11-268G12.1	20505	chrX:27204774:-	ONLY_REF_SPLICE	YES	11	9	0.31	0.36	0.0101	0.0406	HDHD1->chrX:6966961-7066231:-,RP11-268G12.1->chrX:27193037-27417114:-	NCIH2081_LUNG	0.31	0.36	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MYLK-AS1--YAF2	2	0	MYLK-AS1	1253	chr3:123304641:+	YAF2	16620	chr12:42604421:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	MYLK-AS1->MYLK_antisense_RNA_1,chr3:123304389-123363415:+,YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-120D5.1--CA5B	2	0	RP11-120D5.1	4510	chrX:11074056:-	CA5B	22215	chrX:15782701:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RP11-120D5.1->chrX:10865996-11129261:-,CA5B->carbonic_anhydrase_5B,chrX:15706953-15805747:+	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-40F8.2--PHEX	2	0	RP11-40F8.2	3343	chrX:23082155:-	PHEX	15304	chrX:22065168:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_INVERSION:-:+:[8487],RP11-40F8.2->chrX:22277914-23311263:-,PHEX->chrX:22050559-22269427:+,phosphate_regulating_endopeptidase_homolog,_X-linked	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	SCML2--RP11-40F8.2	2	0	SCML2	4322	chrX:18343027:-	RP11-40F8.2	25381	chrX:23082238:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	SCML2->chrX:18257434-18372847:-,sex_comb_on_midleg-like_2_(Drosophila),RP11-40F8.2->chrX:22277914-23311263:-	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TM9SF3--C9orf3	2	0	TM9SF3	7279	chr10:98319416:-	C9orf3	56127	chr9:97822976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	TM9SF3->chr10:98277866-98347209:-,transmembrane_9_superfamily_member_3,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TXNIP--ARPP19	2	0	TXNIP	1584	chr1:145439052:+	ARPP19	9149	chr15:52861099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,ARPP19->cAMP_regulated_phosphoprotein_19kDa,chr15:52839242-52862080:-	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ZNF407--CNDP1	2	0	ZNF407	1068	chr18:72265173:+	CNDP1	40555	chr18:72247366:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_REARRANGEMENT:+:[10658],ZNF407->chr18:72265106-72777627:+,zinc_finger_protein_407,CNDP1->carnosine_dipeptidase_1_(metallopeptidase_M20_family),chr18:72201675-72254448:+	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	LRRFIP2--NEK10	1	3	LRRFIP2	2621	chr3:37217551:-	NEK10	84367	chr3:27161359:-	ONLY_REF_SPLICE	YES	49	0	0.08	1	0.0101	0.0304	LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2,NEK10->NIMA_related_kinase_10,chr3:27151576-27410951:-	NCIH2081_LUNG	0.08	1	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TBC1D5--CAPN7	1	3	TBC1D5	9502	chr3:17704482:-	CAPN7	56609	chr3:15253611:+	ONLY_REF_SPLICE	YES	18	20	0.18	0.17	0.0101	0.0304	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,CAPN7->calpain_7,chr3:15247659-15294425:+	NCIH2081_LUNG	0.17	0.18	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CMTM6--CHL1	1	2	CMTM6	2978	chr3:32533202:-	CHL1	13911	chr3:254887:+	ONLY_REF_SPLICE	YES	45	0	0.06	1	0.0101	0.0203	CMTM6->CKLF_like_MARVEL_transmembrane_domain_containing_6,chr3:32522804-32544900:-,CHL1->Oncogene{Bushman},cell_adhesion_molecule_L1_like,chr3:238279-451090:+	NCIH2081_LUNG	0.06	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	HDHD1--RP11-268G12.1	1	2	HDHD1	3426	chrX:7023661:-	RP11-268G12.1	18357	chrX:27354610:-	ONLY_REF_SPLICE	NO	22	7	0.12	0.3	0.0101	0.0203	HDHD1->chrX:6966961-7066231:-,RP11-268G12.1->chrX:27193037-27417114:-	NCIH2081_LUNG	0.12	0.3	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	SYN2--TRANK1	1	2	SYN2	1553	chr3:12046428:+	TRANK1	32731	chr3:36915787:-	ONLY_REF_SPLICE	YES	2	19	0.6	0.14	0.0101	0.0203	SYN2->chr3:12045876-12232900:+,synapsin_II,TRANK1->chr3:36868311-36986548:-,tetratricopeptide_repeat_and_ankyrin_repeat_containing_1	NCIH2081_LUNG	0.14	0.6	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CMTM7--OSBPL10	1	1	CMTM7	6139	chr3:32493965:+	OSBPL10	22492	chr3:31918004:-	ONLY_REF_SPLICE	YES	10	9	0.17	0.18	0.0101	0.0101	CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+,OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10	NCIH2081_LUNG	0.17	0.18	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	STAC--TOPAZ1	1	1	STAC	8411	chr3:36527741:+	TOPAZ1	28190	chr3:44310708:+	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0101	0.0101	STAC->SH3_and_cysteine_rich_domain,chr3:36421836-36589499:+,TOPAZ1->chr3:44283378-44373590:+,testis_and_ovary_specific_PAZ_domain_containing_1	NCIH2081_LUNG	0.11	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	SYN2--TRANK1	1	1	SYN2	1553	chr3:12046428:+	TRANK1	33902	chr3:36905971:-	ONLY_REF_SPLICE	NO	2	12	0.5	0.14	0.0101	0.0101	SYN2->chr3:12045876-12232900:+,synapsin_II,TRANK1->chr3:36868311-36986548:-,tetratricopeptide_repeat_and_ankyrin_repeat_containing_1	NCIH2081_LUNG	0.14	0.5	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ZNF852--LZTFL1	1	1	ZNF852	1084	chr3:44552045:-	LZTFL1	16123	chr3:45879539:-	ONLY_REF_SPLICE	YES	0	9	1	0.18	0.0101	0.0101	ZNF852->chr3:44540462-44552128:-,zinc_finger_protein_852,LZTFL1->chr3:45864808-45957534:-,leucine_zipper_transcription_factor_like_1	NCIH2081_LUNG	0.18	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000394
HS255T_FIBROBLAST	COL1A1--COL6A2	33	0	COL1A1	5797	chr17:48273978:-	COL6A2	36137	chr21:47544799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3518	0	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS255T_FIBROBLAST	1	1	0.3518	TRUE	0	0	0	6	0	TRUE	ACH-000199
HS255T_FIBROBLAST	CTGF--TPM2	5	0	CTGF	1143	chr6:132272371:-	TPM2	8296	chr9:35689920:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS255T_FIBROBLAST	1	1	0.0533	TRUE	0	0	0	2	0	TRUE	ACH-000199
HS255T_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS255T_FIBROBLAST	1	1	0.032	TRUE	0	0	0	8	0	TRUE	ACH-000199
HS255T_FIBROBLAST	COL1A1--COL6A2	2	0	COL1A1	9420	chr17:48270355:-	COL6A2	34461	chr21:47542410:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS255T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	2	0	TRUE	ACH-000199
HS255T_FIBROBLAST	CPQ--SDC2	2	0	CPQ	1176	chr8:97657630:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	HS255T_FIBROBLAST	1	1	0.0213	TRUE	1	37	5	9	9	TRUE	ACH-000199
HS255T_FIBROBLAST	KIAA1199--TPM1	2	0	KIAA1199	14615	chr15:81201647:+	TPM1	42804	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	KIAA1199->chr15:81071684-81244117:+,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	HS255T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000199
HS255T_FIBROBLAST	TPM2--THBS2	2	0	TPM2	4592	chr9:35685061:-	THBS2	25251	chr6:169629774:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Artery_-_Coronary=1},TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),THBS2->Oncogene{Bushman},chr6:169615875-169654139:-,thrombospondin_2	HS255T_FIBROBLAST	1	1	0.0213	TRUE	1	0	0	1	0	TRUE	ACH-000199
UACC893_BREAST	HUWE1--XAGE1A	2828	1258	HUWE1	7413	chrX:53674311:-	XAGE1A	81364	chrX:52258715:-	ONLY_REF_SPLICE	YES	43	7	0.99	1	29.7695	13.2426	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1A->X_antigen_family_member_1A,chrX:52255219-52260363:-	UACC893_BREAST	0.99	1	43.0121	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	RARA--KIAA0195	977	546	RARA	6149	chr17:38487648:+	KIAA0195	27464	chr17:73481509:+	ONLY_REF_SPLICE	YES	16	36	0.99	0.98	10.2846	5.7476	{Klijn_CCL:Breast=1},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,KIAA0195->chr17:73437240-73496171:+	UACC893_BREAST	0.98	0.99	16.0322	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	EZR--RSPH3	547	220	EZR	2248	chr6:159239114:-	RSPH3	25887	chr6:159399378:-	ONLY_REF_SPLICE	YES	722	13	0.52	0.98	5.7581	2.3159	EZR->chr6:159186773-159240444:-,ezrin,RSPH3->chr6:159393903-159421219:-,radial_spoke_3_homolog	UACC893_BREAST	0.52	0.98	8.074	TRUE	0	0	0	3	0	TRUE	ACH-000554
UACC893_BREAST	HUWE1--XAGE1A	4	1261	HUWE1	7413	chrX:53674311:-	XAGE1A	79962	chrX:52260203:-	INCL_NON_REF_SPLICE	YES	43	8	0.97	0.99	0.0421	13.2742	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1A->X_antigen_family_member_1A,chrX:52255219-52260363:-	UACC893_BREAST	0.97	0.99	13.3163	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	CCDC6--ANK3	248	101	CCDC6	1535	chr10:61665880:-	ANK3	85094	chr10:61802517:-	ONLY_REF_SPLICE	YES	65	38	0.84	0.9	2.6106	1.0632	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	UACC893_BREAST	0.84	0.9	3.6738	TRUE	0	3	0	2	3	TRUE	ACH-000554
UACC893_BREAST	FBXL20--CDK12	237	77	FBXL20	3225	chr17:37499433:-	CDK12	31941	chr17:37665958:+	ONLY_REF_SPLICE	YES	5	828	0.98	0.27	2.4948	0.8106	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[58988],FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	UACC893_BREAST	0.27	0.98	3.3054	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	GRB7--PPP1R1B	134	44	GRB7	8206	chr17:37902455:+	PPP1R1B	20143	chr17:37792069:+	ONLY_REF_SPLICE	YES	1378	321	0.11	0.36	1.4106	0.4632	GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	UACC893_BREAST	0.11	0.36	1.8738	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MED1--IKZF3	132	43	MED1	6915	chr17:37595418:-	IKZF3	29533	chr17:37949186:-	ONLY_REF_SPLICE	YES	284	0	0.38	1	1.3895	0.4526	MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	UACC893_BREAST	0.38	1	1.8421	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	SIAH1--ABCC11	100	57	SIAH1	9331	chr16:48419115:-	ABCC11	52105	chr16:48204878:-	ONLY_REF_SPLICE	YES	16	26	0.91	0.86	1.0527	0.6	SIAH1->chr16:48390275-48482313:-,siah_E3_ubiquitin_protein_ligase_1,ABCC11->ATP_binding_cassette_subfamily_C_member_11,chr16:48200821-48281479:-	UACC893_BREAST	0.86	0.91	1.6527	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	CCDC6--ANK3	82	101	CCDC6	1535	chr10:61665880:-	ANK3	85097	chr10:61802514:-	INCL_NON_REF_SPLICE	YES	65	34	0.74	0.84	0.8632	1.0632	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	UACC893_BREAST	0.74	0.84	1.9264	TRUE	0	3	0	2	3	TRUE	ACH-000554
UACC893_BREAST	BAIAP2--PSMD12	91	42	BAIAP2	1161	chr17:79009108:+	PSMD12	44021	chr17:65338379:-	ONLY_REF_SPLICE	YES	71	166	0.65	0.44	0.9579	0.4421	{Klijn_CCL:Breast=1},BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,PSMD12->chr17:65334032-65362743:-,proteasome_26S_subunit,_non-ATPase_12	UACC893_BREAST	0.44	0.65	1.4	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	LLGL2--RECQL5	98	6	LLGL2	1746	chr17:73521906:+	RECQL5	28233	chr17:73661252:-	ONLY_REF_SPLICE	YES	37	1348	0.74	0.07	1.0316	0.0632	LOCAL_INVERSION:+:-:[51636],LLGL2->LLGL2,_scribble_cell_polarity_complex_component,chr17:73521161-73571289:+,RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-	UACC893_BREAST	0.07	0.74	1.0948	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	HUWE1--XAGE1A	4	340	HUWE1	7299	chrX:53674425:-	XAGE1A	81364	chrX:52258715:-	INCL_NON_REF_SPLICE	YES	176	7	0.66	0.98	0.0421	3.5791	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1A->X_antigen_family_member_1A,chrX:52255219-52260363:-	UACC893_BREAST	0.66	0.98	3.6212	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	HUWE1--XAGE1A	4	239	HUWE1	7413	chrX:53674311:-	XAGE1A	82033	chrX:52258046:-	ONLY_REF_SPLICE	YES	43	250	0.85	0.49	0.0421	2.5159	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1A->X_antigen_family_member_1A,chrX:52255219-52260363:-	UACC893_BREAST	0.49	0.85	2.558	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	CCSER1--HERC6	59	15	CCSER1	1297	chr4:91048982:+	HERC6	56219	chr4:89345012:+	ONLY_REF_SPLICE	YES	6	4	0.93	0.95	0.6211	0.1579	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,HERC6->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_6,chr4:89299891-89364263:+	UACC893_BREAST	0.93	0.95	0.779	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	UBE2K--UGDH-AS1	61	6	UBE2K	1347	chr4:39700010:+	UGDH-AS1	17277	chr4:39589543:+	ONLY_REF_SPLICE	YES	26	0	0.72	1	0.6421	0.0632	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,UGDH-AS1->UGDH_antisense_RNA_1,chr4:39529639-39596327:+	UACC893_BREAST	0.72	1	0.7053	TRUE	0	1	0	1	1	TRUE	ACH-000554
UACC893_BREAST	LLGL2--RECQL5	56	11	LLGL2	1746	chr17:73521906:+	RECQL5	27040	chr17:73662700:-	ONLY_REF_SPLICE	YES	37	1177	0.64	0.05	0.5895	0.1158	LOCAL_INVERSION:+:-:[51636],LLGL2->LLGL2,_scribble_cell_polarity_complex_component,chr17:73521161-73571289:+,RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-	UACC893_BREAST	0.05	0.64	0.7053	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	ITGB6--RBMS1	47	25	ITGB6	21507	chr2:160968591:-	RBMS1	42878	chr2:161143595:-	ONLY_REF_SPLICE	YES	92	74	0.44	0.49	0.4948	0.2632	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[263],ITGB6->chr2:160956177-161128399:-,integrin_subunit_beta_6,RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-	UACC893_BREAST	0.44	0.49	0.758	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	GSK3B--GPR156	46	20	GSK3B	2071	chr3:119812194:-	GPR156	26692	chr3:119912271:-	ONLY_REF_SPLICE	YES	93	0	0.42	1	0.4842	0.2105	LOCAL_REARRANGEMENT:-:[70228],GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,GPR156->G_protein-coupled_receptor_156,chr3:119883492-120003941:-	UACC893_BREAST	0.42	1	0.6947	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	HUWE1--XAGE1A	3	181	HUWE1	6569	chrX:53675155:-	XAGE1A	81364	chrX:52258715:-	ONLY_REF_SPLICE	YES	593	7	0.24	0.96	0.0316	1.9053	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1A->X_antigen_family_member_1A,chrX:52255219-52260363:-	UACC893_BREAST	0.24	0.96	1.9369	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	HUWE1--XAGE1A	23	65	HUWE1	5470	chrX:53681007:-	XAGE1A	81364	chrX:52258715:-	ONLY_REF_SPLICE	YES	782	7	0.1	0.93	0.2421	0.6842	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1A->X_antigen_family_member_1A,chrX:52255219-52260363:-	UACC893_BREAST	0.1	0.93	0.9263	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	LLGL2--RECQL5	36	7	LLGL2	1746	chr17:73521906:+	RECQL5	27103	chr17:73662637:-	INCL_NON_REF_SPLICE	YES	37	928	0.54	0.04	0.379	0.0737	LOCAL_INVERSION:+:-:[51636],LLGL2->LLGL2,_scribble_cell_polarity_complex_component,chr17:73521161-73571289:+,RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-	UACC893_BREAST	0.04	0.54	0.4527	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	EIF2AK3--PRKD3	32	6	EIF2AK3	3924	chr2:88913242:-	PRKD3	30146	chr2:37520414:-	ONLY_REF_SPLICE	YES	19	5	0.67	0.88	0.3369	0.0632	PROTCLUST,{Klijn_CCL:Breast=1},EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3,PRKD3->chr2:37477645-37551951:-,protein_kinase_D3	UACC893_BREAST	0.67	0.88	0.4001	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	FEM1B--KCNG3	30	12	FEM1B	1863	chr15:68571003:+	KCNG3	16076	chr2:42671719:-	ONLY_REF_SPLICE	YES	21	2	0.67	0.95	0.3158	0.1263	{Klijn_CCL:Breast=1},FEM1B->chr15:68570141-68588203:+,fem-1_homolog_B,KCNG3->chr2:42669157-42721237:-,potassium_voltage-gated_channel_modifier_subfamily_G_member_3	UACC893_BREAST	0.67	0.95	0.4421	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	CCDC6--ANK3	4	102	CCDC6	1535	chr10:61665880:-	ANK3	83505	chr10:61804106:-	ONLY_REF_SPLICE	YES	65	37	0.62	0.74	0.0421	1.0737	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	UACC893_BREAST	0.62	0.74	1.1158	TRUE	0	1	0	1	1	TRUE	ACH-000554
UACC893_BREAST	SNHG3--EYA3	24	15	SNHG3	5125	chr1:28836616:+	EYA3	16654	chr1:28343750:-	INCL_NON_REF_SPLICE	YES	7	5	0.85	0.89	0.2526	0.1579	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-	UACC893_BREAST	0.85	0.89	0.4105	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	ZNF710--WDR93	24	11	ZNF710	6867	chr15:90617522:+	WDR93	25845	chr15:90270388:+	ONLY_REF_SPLICE	YES	101	1	0.26	0.97	0.2526	0.1158	ZNF710->chr15:90544624-90625438:+,zinc_finger_protein_710,WDR93->WD_repeat_domain_93,chr15:90234028-90286869:+	UACC893_BREAST	0.26	0.97	0.3684	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	GAREM--RP11-405F3.4	25	6	GAREM	4540	chr18:29890156:-	RP11-405F3.4	22154	chr16:57720732:-	ONLY_REF_SPLICE	YES	21	0	0.6	1	0.2632	0.0632	GAREM->chr18:29704840-30050447:-,RP11-405F3.4->chr16:57715036-57735642:-	UACC893_BREAST	0.6	1	0.3264	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	RARA--KIAA0195	1	96	RARA	6149	chr17:38487648:+	KIAA0195	28326	chr17:73482371:+	ONLY_REF_SPLICE	NO	16	317	0.86	0.23	0.0105	1.0106	{Klijn_CCL:Breast=1},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,KIAA0195->chr17:73437240-73496171:+	UACC893_BREAST	0.23	0.86	1.0211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	SIAH1--ABCC11	18	17	SIAH1	9331	chr16:48419115:-	ABCC11	53968	chr16:48201571:-	ONLY_REF_SPLICE	YES	16	94	0.69	0.27	0.1895	0.179	SIAH1->chr16:48390275-48482313:-,siah_E3_ubiquitin_protein_ligase_1,ABCC11->ATP_binding_cassette_subfamily_C_member_11,chr16:48200821-48281479:-	UACC893_BREAST	0.27	0.69	0.3685	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	GSK3B--GPR156	19	8	GSK3B	2071	chr3:119812194:-	GPR156	28178	chr3:119905630:-	ONLY_REF_SPLICE	YES	93	15	0.23	0.64	0.2	0.0842	LOCAL_REARRANGEMENT:-:[70228],GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,GPR156->G_protein-coupled_receptor_156,chr3:119883492-120003941:-	UACC893_BREAST	0.23	0.64	0.2842	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	DHX30--SMARCC1	17	4	DHX30	16063	chr3:47882668:+	SMARCC1	47917	chr3:47712207:-	ONLY_REF_SPLICE	YES	13	0	0.62	1	0.179	0.0421	LOCAL_INVERSION:+:-:[20803],DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+,SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-	UACC893_BREAST	0.62	1	0.2211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	SEC63--REV3L	16	8	SEC63	16521	chr6:108222574:-	REV3L	75553	chr6:111628773:-	ONLY_REF_SPLICE	YES	205	21	0.1	0.53	0.1684	0.0842	SEC63->SEC63_homolog,_protein_translocation_regulator,chr6:108188960-108279393:-,REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-	UACC893_BREAST	0.1	0.53	0.2526	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	PLA2G6--EIF4ENIF1	12	6	PLA2G6	24159	chr22:38519102:-	EIF4ENIF1	46125	chr22:31846346:-	ONLY_REF_SPLICE	YES	30	13	0.38	0.58	0.1263	0.0632	PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI,EIF4ENIF1->chr22:31832963-31892094:-,eukaryotic_translation_initiation_factor_4E_nuclear_import_factor_1	UACC893_BREAST	0.38	0.58	0.1895	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	RARA--KIAA0195	4	32	RARA	2263	chr17:38474700:+	KIAA0195	27907	chr17:73481952:+	ONLY_REF_SPLICE	YES	933	124	0.04	0.23	0.0421	0.3369	{Klijn_CCL:Breast=1},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,KIAA0195->chr17:73437240-73496171:+	UACC893_BREAST	0.04	0.23	0.379	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	ACTN4--CDH13	9	10	ACTN4	1259	chr19:39138547:+	CDH13	39647	chr16:83065615:+	ONLY_REF_SPLICE	YES	370	0	0.05	1	0.0947	0.1053	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+	UACC893_BREAST	0.05	1	0.2	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	FBXL20--CDK12	1	42	FBXL20	2163	chr17:37557614:-	CDK12	31941	chr17:37665958:+	ONLY_REF_SPLICE	NO	5	828	0.9	0.05	0.0105	0.4421	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[58988],FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	UACC893_BREAST	0.05	0.9	0.4526	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	EYA3--RCC1	8	8	EYA3	6602	chr1:28362055:-	RCC1	33321	chr1:28843237:+	ONLY_REF_SPLICE	YES	5	0	0.76	1	0.0842	0.0842	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1	UACC893_BREAST	0.76	1	0.1684	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	EIF2AK3--PRKD3	7	9	EIF2AK3	3924	chr2:88913242:-	PRKD3	28203	chr2:37544322:-	ONLY_REF_SPLICE	YES	19	2	0.46	0.89	0.0737	0.0947	PROTCLUST,{Klijn_CCL:Breast=1},EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3,PRKD3->chr2:37477645-37551951:-,protein_kinase_D3	UACC893_BREAST	0.46	0.89	0.1684	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	SNHG3--EYA3	7	9	SNHG3	3926	chr1:28835417:+	EYA3	16654	chr1:28343750:-	INCL_NON_REF_SPLICE	YES	83	5	0.16	0.76	0.0737	0.0947	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-	UACC893_BREAST	0.16	0.76	0.1684	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	EYA3--RCC1	7	7	EYA3	6602	chr1:28362055:-	RCC1	36286	chr1:28856370:+	ONLY_REF_SPLICE	YES	5	2	0.74	0.88	0.0737	0.0737	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1	UACC893_BREAST	0.74	0.88	0.1474	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MAP4--DHX30	7	4	MAP4	16041	chr3:47956307:-	DHX30	54537	chr3:47882367:+	ONLY_REF_SPLICE	YES	33	29	0.25	0.28	0.0737	0.0421	LOCAL_INVERSION:-:+:[497],MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+	UACC893_BREAST	0.25	0.28	0.1158	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	SIAH1--ABCC11	1	25	SIAH1	9331	chr16:48419115:-	ABCC11	52854	chr16:48204129:-	ONLY_REF_SPLICE	YES	16	23	0.62	0.53	0.0105	0.2632	SIAH1->chr16:48390275-48482313:-,siah_E3_ubiquitin_protein_ligase_1,ABCC11->ATP_binding_cassette_subfamily_C_member_11,chr16:48200821-48281479:-	UACC893_BREAST	0.53	0.62	0.2737	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	GSK3B--GPR156	6	2	GSK3B	2071	chr3:119812194:-	GPR156	29304	chr3:119904241:-	ONLY_REF_SPLICE	YES	93	14	0.08	0.36	0.0632	0.0211	LOCAL_REARRANGEMENT:-:[70228],GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,GPR156->G_protein-coupled_receptor_156,chr3:119883492-120003941:-	UACC893_BREAST	0.08	0.36	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	PLA2G6--EIF4ENIF1	5	2	PLA2G6	22263	chr22:38522378:-	EIF4ENIF1	46125	chr22:31846346:-	ONLY_REF_SPLICE	YES	28	13	0.2	0.35	0.0526	0.0211	PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI,EIF4ENIF1->chr22:31832963-31892094:-,eukaryotic_translation_initiation_factor_4E_nuclear_import_factor_1	UACC893_BREAST	0.2	0.35	0.0737	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	PLA2G6--EIF4ENIF1	5	2	PLA2G6	22995	chr22:38521646:-	EIF4ENIF1	46125	chr22:31846346:-	ONLY_REF_SPLICE	YES	29	13	0.19	0.35	0.0526	0.0211	PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI,EIF4ENIF1->chr22:31832963-31892094:-,eukaryotic_translation_initiation_factor_4E_nuclear_import_factor_1	UACC893_BREAST	0.19	0.35	0.0737	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	UBE2K--UGDH-AS1	5	2	UBE2K	1347	chr4:39700010:+	UGDH-AS1	18414	chr4:39591207:+	ONLY_REF_SPLICE	YES	26	19	0.21	0.27	0.0526	0.0211	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,UGDH-AS1->UGDH_antisense_RNA_1,chr4:39529639-39596327:+	UACC893_BREAST	0.21	0.27	0.0737	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	GSK3B--GPR156	1	15	GSK3B	2071	chr3:119812194:-	GPR156	27067	chr3:119911896:-	ONLY_REF_SPLICE	YES	93	1	0.15	0.94	0.0105	0.1579	LOCAL_REARRANGEMENT:-:[70228],GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,GPR156->G_protein-coupled_receptor_156,chr3:119883492-120003941:-	UACC893_BREAST	0.15	0.94	0.1684	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MAP4--DHX30	3	5	MAP4	20425	chr3:47950528:-	DHX30	54537	chr3:47882367:+	ONLY_REF_SPLICE	YES	36	29	0.18	0.22	0.0316	0.0526	LOCAL_INVERSION:-:+:[497],MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+	UACC893_BREAST	0.18	0.22	0.0842	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	UBE3B--MYH11	3	3	UBE3B	15831	chr12:109940995:+	MYH11	73514	chr16:15815491:-	ONLY_REF_SPLICE	YES	35	0	0.15	1	0.0316	0.0316	UBE3B->chr12:109915207-109974507:+,ubiquitin_protein_ligase_E3B,MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	UACC893_BREAST	0.15	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	TVP23C--MAP2K3	3	2	TVP23C	2403	chr17:15465507:-	MAP2K3	29367	chr17:21206495:+	ONLY_REF_SPLICE	YES	8	26	0.38	0.16	0.0316	0.0211	TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),MAP2K3->chr17:21187984-21218552:+,mitogen-activated_protein_kinase_kinase_3	UACC893_BREAST	0.16	0.38	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	CCSER1--HERC6	3	1	CCSER1	1297	chr4:91048982:+	HERC6	59233	chr4:89352314:+	ONLY_REF_SPLICE	YES	6	23	0.4	0.15	0.0316	0.0105	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,HERC6->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_6,chr4:89299891-89364263:+	UACC893_BREAST	0.15	0.4	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	SIAH1--ABCC11	1	5	SIAH1	9331	chr16:48419115:-	ABCC11	54262	chr16:48201277:-	ONLY_REF_SPLICE	NO	16	121	0.27	0.05	0.0105	0.0526	SIAH1->chr16:48390275-48482313:-,siah_E3_ubiquitin_protein_ligase_1,ABCC11->ATP_binding_cassette_subfamily_C_member_11,chr16:48200821-48281479:-	UACC893_BREAST	0.05	0.27	0.0631	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	CHST11--TXNRD1	2	0	CHST11	5138	chr12:104995769:+	TXNRD1	29112	chr12:104705068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	{Klijn_CCL:Ovary=1},CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	UACC893_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	FARP2--CTNNA1	2	0	FARP2	1146	chr2:242295803:+	CTNNA1	60434	chr5:138160219:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	UACC893_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	KIAA0195--LRRC37A11P	2	0	KIAA0195	5501	chr17:73468010:+	LRRC37A11P	31631	chr17:37190423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	KIAA0195->chr17:73437240-73496171:+,LRRC37A11P->chr17:37183530-37209458:+,leucine-rich_repeat_containing_37_member_A11,_pseudogene	UACC893_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	STAT5B--CELSR1	2	0	STAT5B	1460	chr17:40428266:-	CELSR1	35125	chr22:46807656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-	UACC893_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	WIPF2--HSPA9	2	0	WIPF2	1189	chr17:38375744:+	HSPA9	28835	chr5:137895780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	UACC893_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	CCSER1--HERC6	1	3	CCSER1	1297	chr4:91048982:+	HERC6	58062	chr4:89349732:+	ONLY_REF_SPLICE	YES	6	30	0.4	0.12	0.0105	0.0316	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,HERC6->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_6,chr4:89299891-89364263:+	UACC893_BREAST	0.12	0.4	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000554
NCIH1184_LUNG	RERE--SLC2A5	254	187	RERE	8908	chr1:8674620:-	SLC2A5	46985	chr1:9118309:-	ONLY_REF_SPLICE	YES	88	0	0.83	1	3.0168	2.221	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC2A5->chr1:9095166-9148537:-,solute_carrier_family_2_member_5	NCIH1184_LUNG	0.83	1	5.2378	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	SF3A3--GNL2	183	78	SF3A3	9340	chr1:38444392:-	GNL2	34972	chr1:38033958:-	ONLY_REF_SPLICE	YES	1216	798	0.18	0.25	2.1735	0.9264	SF3A3->chr1:38422647-38456593:-,splicing_factor_3a_subunit_3,GNL2->G_protein_nucleolar_2,chr1:38032417-38061536:-	NCIH1184_LUNG	0.18	0.25	3.0999	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	STAT3--PTRF	83	86	STAT3	1290	chr17:40540297:-	PTRF	28979	chr17:40557406:-	ONLY_REF_SPLICE	YES	256	31	0.4	0.84	0.9858	1.0214	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:-:[13884],STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3,PTRF->chr17:40554470-40575535:-,polymerase_I_and_transcript_release_factor	NCIH1184_LUNG	0.4	0.84	2.0072	TRUE	0	6	1	3	4	TRUE	ACH-000523
NCIH1184_LUNG	XPO7--LSM1	78	2	XPO7	1120	chr8:21777299:+	LSM1	36871	chr8:38029551:-	ONLY_REF_SPLICE	YES	1	342	0.99	0.19	0.9264	0.0238	XPO7->chr8:21777180-21864096:+,exportin_7,LSM1->LSM1_homolog,_mRNA_degradation_associated,chr8:38020839-38034248:-	NCIH1184_LUNG	0.19	0.99	0.9502	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	MACF1--RHBDL2	56	20	MACF1	24617	chr1:39753234:+	RHBDL2	129364	chr1:39385009:-	ONLY_REF_SPLICE	YES	132	19	0.37	0.8	0.6651	0.2375	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,RHBDL2->chr1:39351479-39407471:-,rhomboid,_veinlet-like_2_(Drosophila)	NCIH1184_LUNG	0.37	0.8	0.9026	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	PRKRIP1--CUX1	41	37	PRKRIP1	6802	chr7:102038145:+	CUX1	48850	chr7:101877332:+	ONLY_REF_SPLICE	YES	89	180	0.47	0.3	0.487	0.4395	LOCAL_REARRANGEMENT:+:[77070],PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	NCIH1184_LUNG	0.3	0.47	0.9265	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	STAT3--PTRF	10	93	STAT3	1290	chr17:40540297:-	PTRF	27420	chr17:40575203:-	INCL_NON_REF_SPLICE	YES	256	12	0.29	0.9	0.1188	1.1046	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:-:[13884],STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3,PTRF->chr17:40554470-40575535:-,polymerase_I_and_transcript_release_factor	NCIH1184_LUNG	0.29	0.9	1.2234	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	PRKRIP1--CUX1	12	23	PRKRIP1	5723	chr7:102036984:+	CUX1	48850	chr7:101877332:+	ONLY_REF_SPLICE	YES	114	180	0.23	0.16	0.1425	0.2732	LOCAL_REARRANGEMENT:+:[77070],PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	NCIH1184_LUNG	0.16	0.23	0.4157	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	PRKRIP1--CUX1	8	7	PRKRIP1	4162	chr7:102016769:+	CUX1	48850	chr7:101877332:+	ONLY_REF_SPLICE	YES	60	180	0.2	0.08	0.095	0.0831	LOCAL_REARRANGEMENT:+:[77070],PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	NCIH1184_LUNG	0.08	0.2	0.1781	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	TRIB3--CCM2L	6	13	TRIB3	5594	chr20:372223:+	CCM2L	15778	chr20:30610463:+	ONLY_REF_SPLICE	YES	23	5	0.45	0.79	0.0713	0.1544	TRIB3->chr20:361261-378203:+,tribbles_pseudokinase_3,CCM2L->CCM2_like_scaffolding_protein,chr20:30598245-30619984:+	NCIH1184_LUNG	0.45	0.79	0.2257	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	TANGO6--SNTB2	9	0	TANGO6	24871	chr16:69074324:+	SNTB2	36840	chr16:69317951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1069	0	TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2	NCIH1184_LUNG	1	1	0.1069	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	RRAGC--MACF1	7	7	RRAGC	9109	chr1:39311611:-	MACF1	39285	chr1:39757582:+	ONLY_REF_SPLICE	YES	106	126	0.12	0.1	0.0831	0.0831	RRAGC->Ras_related_GTP_binding_C,chr1:39303870-39325495:-,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	NCIH1184_LUNG	0.1	0.12	0.1662	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	RERE--SLC2A5	2	23	RERE	8908	chr1:8674620:-	SLC2A5	49949	chr1:9107793:-	ONLY_REF_SPLICE	YES	88	133	0.22	0.16	0.0238	0.2732	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC2A5->chr1:9095166-9148537:-,solute_carrier_family_2_member_5	NCIH1184_LUNG	0.16	0.22	0.297	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	KANSL1--RP11-707O23.5	5	6	KANSL1	8599	chr17:44230270:-	RP11-707O23.5	32091	chr17:43679427:-	INCL_NON_REF_SPLICE	YES	157	0	0.07	1	0.0594	0.0713	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,RP11-707O23.5->chr17:43678235-43679706:-	NCIH1184_LUNG	0.07	1	0.1307	TRUE	0	1	0	2	0	TRUE	ACH-000523
NCIH1184_LUNG	NPEPL1--DNAJC5	6	1	NPEPL1	14222	chr20:57290918:+	DNAJC5	27854	chr20:62566161:+	INCL_NON_REF_SPLICE	YES	1	85	0.88	0.08	0.0713	0.0119	NPEPL1->aminopeptidase-like_1,chr20:57264187-57294294:+,DNAJC5->DnaJ_heat_shock_protein_family_(Hsp40)_member_C5,chr20:62526518-62567384:+	NCIH1184_LUNG	0.08	0.88	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	RP11-21A7A.2--MARK2	5	1	RP11-21A7A.2	1190	chr11:63803631:+	MARK2	15064	chr11:63662631:+	ONLY_REF_SPLICE	YES	1	32	0.86	0.16	0.0594	0.0119	RP11-21A7A.2->chr11:63803442-63871125:+,MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2	NCIH1184_LUNG	0.16	0.86	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	C20orf112--CHRNA6	4	1	C20orf112	1505	chr20:31172372:-	CHRNA6	32910	chr8:42620347:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0475	0.0119	C20orf112->chr20:31030862-31172876:-,CHRNA6->cholinergic_receptor_nicotinic_alpha_6_subunit,chr8:42607763-42651535:-	NCIH1184_LUNG	0.56	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	MACF1--INPP5B	3	4	MACF1	6636	chr1:39571389:+	INPP5B	135609	chr1:38357126:-	ONLY_REF_SPLICE	YES	56	43	0.11	0.14	0.0356	0.0475	GTEx&tcga_normals:1/3694=0.03%,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B	NCIH1184_LUNG	0.11	0.14	0.0831	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	RP13-188A5.1--KLF8	3	3	RP13-188A5.1	2795	chrX:56041394:+	KLF8	7929	chrX:56276664:+	INCL_NON_REF_SPLICE	YES	0	22	1	0.21	0.0356	0.0356	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	NCIH1184_LUNG	0.21	1	0.0712	TRUE	1	15	1	5	11	TRUE	ACH-000523
NCIH1184_LUNG	ZNF519--RHOT1	3	0	ZNF519	2343	chr18:14124349:-	RHOT1	28702	chr17:30509776:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	NCIH1184_LUNG	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	MACF1--INPP5B	1	7	MACF1	6636	chr1:39571389:+	INPP5B	125966	chr1:38412006:-	ONLY_REF_SPLICE	YES	56	0	0.12	1	0.0119	0.0831	GTEx&tcga_normals:1/3694=0.03%,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B	NCIH1184_LUNG	0.12	1	0.095	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	MACF1--INPP5B	2	3	MACF1	3305	chr1:39550110:+	INPP5B	125966	chr1:38412006:-	ONLY_REF_SPLICE	YES	53	0	0.09	1	0.0238	0.0356	GTEx&tcga_normals:1/3694=0.03%,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B	NCIH1184_LUNG	0.09	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	TRIB3--CCM2L	2	3	TRIB3	5594	chr20:372223:+	CCM2L	16914	chr20:30613659:+	ONLY_REF_SPLICE	NO	23	8	0.18	0.38	0.0238	0.0356	TRIB3->chr20:361261-378203:+,tribbles_pseudokinase_3,CCM2L->CCM2_like_scaffolding_protein,chr20:30598245-30619984:+	NCIH1184_LUNG	0.18	0.38	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	AFG3L2--TNFRSF19	2	0	AFG3L2	9384	chr18:12356693:-	TNFRSF19	27801	chr13:24164289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	AFG3L2->AFG3_like_matrix_AAA_peptidase_subunit_2,chr18:12328943-12377313:-,TNFRSF19->chr13:24144509-24250232:+,tumor_necrosis_factor_receptor_superfamily_member_19	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	ARMC7--ARFIP1	2	0	ARMC7	1655	chr17:73106701:+	ARFIP1	19685	chr4:153803875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	ARMC7->armadillo_repeat_containing_7,chr17:73106047-73126360:+,ARFIP1->ADP_ribosylation_factor_interacting_protein_1,chr4:153701089-153839615:+	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	BAZ2B--GPD2	2	0	BAZ2B	43269	chr2:160239070:-	GPD2	71964	chr2:157406120:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,GPD2->chr2:157291802-157470247:+,glycerol-3-phosphate_dehydrogenase_2	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	FAT3--CHORDC1	2	0	FAT3	5624	chr11:92258114:+	CHORDC1	51422	chr11:89951352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	FAT3->FAT_atypical_cadherin_3,chr11:92085262-92629618:+,CHORDC1->chr11:89934328-89956532:-,cysteine_and_histidine_rich_domain_containing_1	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	LEF1--RNF38	2	0	LEF1	8204	chr4:109004512:-	RNF38	27776	chr9:36390613:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	LEF1->Oncogene{Bushman},chr4:108968701-109090112:-,lymphoid_enhancer_binding_factor_1,RNF38->chr9:36336393-36487545:-,ring_finger_protein_38	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	LINC00648--SLK	2	0	LINC00648	2159	chr14:48259109:-	SLK	11739	chr10:105750433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	LINC00648->chr14:48234157-48264295:-,long_intergenic_non-protein_coding_RNA_648,SLK->STE20_like_kinase,chr10:105726959-105788991:+	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	PTPN1--ZFAS1	2	0	PTPN1	5666	chr20:49191191:+	ZFAS1	19806	chr20:47905582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1,ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+	NCIH1184_LUNG	1	1	0.0238	TRUE	1	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	RNGTT--RARS2	2	0	RNGTT	14816	chr6:89388072:-	RARS2	23999	chr6:88279308:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},RNGTT->RNA_guanylyltransferase_and_5'-phosphatase,chr6:89319985-89673348:-,RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	RPS15--CIRBP	2	0	RPS15	1070	chr19:1438427:+	CIRBP	14303	chr19:1270927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	RPS15->chr19:1438358-1440583:+,ribosomal_protein_S15,CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	SNTG1--ATP6V1H	2	0	SNTG1	24691	chr8:51621538:+	ATP6V1H	43655	chr8:54714456:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	SNTG1->chr8:50822349-51706678:+,syntrophin_gamma_1,ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	VPS45--USP48	2	0	VPS45	15518	chr1:150082742:+	USP48	33409	chr1:22056322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	VPS45->chr1:150039369-150117505:+,vacuolar_protein_sorting_45_homolog,USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH2106_LUNG	CALM3--PAFAH1B3	230	25	CALM3	1364	chr19:47104694:+	PAFAH1B3	15517	chr19:42801517:-	ONLY_REF_SPLICE	YES	194	119	0.57	0.68	2.4244	0.2635	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3	NCIH2106_LUNG	0.57	0.68	2.6879	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	PICALM--ME3	166	57	PICALM	2232	chr11:85779693:-	ME3	35836	chr11:86219909:-	ONLY_REF_SPLICE	YES	140	32	0.61	0.87	1.7497	0.6008	PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3	NCIH2106_LUNG	0.61	0.87	2.3505	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	ANKLE2--KIF1B	146	32	ANKLE2	12102	chr12:133324418:-	KIF1B	35951	chr1:10318551:+	ONLY_REF_SPLICE	YES	59	60	0.75	0.75	1.5389	0.3373	ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-,KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B	NCIH2106_LUNG	0.75	0.75	1.8762	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	PAFAH1B3--CALM3	65	26	PAFAH1B3	3915	chr19:42804122:-	CALM3	11502	chr19:47109084:+	ONLY_REF_SPLICE	YES	124	377	0.42	0.19	0.6851	0.2741	PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+	NCIH2106_LUNG	0.19	0.42	0.9592	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	PUM1--AC010880.1	48	1	PUM1	1376	chr1:31538463:-	AC010880.1	35460	chr2:16573521:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.506	0.0105	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,AC010880.1->chr2:16535524-16613970:+	NCIH2106_LUNG	0.98	1	0.5165	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	RIMKLB--RP11-776A13.3	25	6	RIMKLB	10043	chr12:8906689:+	RP11-776A13.3	26038	chr12:30397338:-	ONLY_REF_SPLICE	YES	44	0	0.41	1	0.2635	0.0632	RIMKLB->chr12:8834196-8935691:+,ribosomal_modification_protein_rimK-like_family_member_B,RP11-776A13.3->chr12:30383712-30449640:-	NCIH2106_LUNG	0.41	1	0.3267	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	TMTC1--RP11-776A13.3	18	4	TMTC1	17004	chr12:29725038:-	RP11-776A13.3	45339	chr12:30397338:-	ONLY_REF_SPLICE	YES	18	0	0.55	1	0.1897	0.0422	TMTC1->chr12:29653773-29937692:-,transmembrane_and_tetratricopeptide_repeat_containing_1,RP11-776A13.3->chr12:30383712-30449640:-	NCIH2106_LUNG	0.55	1	0.2319	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	C3orf52--PHLDB2	15	10	C3orf52	3469	chr3:111821812:+	PHLDB2	36797	chr3:111664115:+	ONLY_REF_SPLICE	YES	4	15	0.86	0.62	0.1581	0.1054	C3orf52->chr3:111805182-111849851:+,chromosome_3_open_reading_frame_52,PHLDB2->chr3:111451344-111695364:+,pleckstrin_homology_like_domain_family_B_member_2	NCIH2106_LUNG	0.62	0.86	0.2635	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	FRY--KCNRG	16	4	FRY	12592	chr13:32711109:+	KCNRG	76048	chr13:50594350:+	ONLY_REF_SPLICE	YES	9	2	0.69	0.91	0.1687	0.0422	FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+,KCNRG->chr13:50589390-50595058:+,potassium_channel_regulator	NCIH2106_LUNG	0.69	0.91	0.2109	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	KCTD7--TYW1	13	1	KCTD7	9434	chr7:66205779:+	TYW1	29644	chr7:66463052:+	ONLY_REF_SPLICE	YES	1	33	0.93	0.3	0.137	0.0105	KCTD7->chr7:66093868-66276446:+,potassium_channel_tetramerization_domain_containing_7,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	NCIH2106_LUNG	0.3	0.93	0.1475	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	FCHSD2--RAB6A	11	4	FCHSD2	3139	chr11:72851076:-	RAB6A	30597	chr11:73441868:-	ONLY_REF_SPLICE	YES	64	196	0.19	0.07	0.1159	0.0422	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	NCIH2106_LUNG	0.07	0.19	0.1581	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	TMEM41B--PDHX	9	1	TMEM41B	6850	chr11:9308002:-	PDHX	25293	chr11:35013862:+	ONLY_REF_SPLICE	YES	42	83	0.19	0.11	0.0949	0.0105	TMEM41B->chr11:9302201-9336327:-,transmembrane_protein_41B,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	NCIH2106_LUNG	0.11	0.19	0.1054	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	FRY--KCNRG	8	4	FRY	12592	chr13:32711109:+	KCNRG	74950	chr13:50592959:+	ONLY_REF_SPLICE	YES	9	0	0.57	1	0.0843	0.0422	FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+,KCNRG->chr13:50589390-50595058:+,potassium_channel_regulator	NCIH2106_LUNG	0.57	1	0.1265	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	C3orf52--PHLDB2	6	6	C3orf52	3469	chr3:111821812:+	PHLDB2	37970	chr3:111667779:+	ONLY_REF_SPLICE	YES	4	11	0.75	0.52	0.0632	0.0632	C3orf52->chr3:111805182-111849851:+,chromosome_3_open_reading_frame_52,PHLDB2->chr3:111451344-111695364:+,pleckstrin_homology_like_domain_family_B_member_2	NCIH2106_LUNG	0.52	0.75	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	KIF1B--ANKLE2	7	2	KIF1B	60092	chr1:10440634:+	ANKLE2	70301	chr12:133332293:-	INCL_NON_REF_SPLICE	YES	72	31	0.11	0.23	0.0738	0.0211	KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	NCIH2106_LUNG	0.11	0.23	0.0949	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	CLTA--FAM201A	6	2	CLTA	4686	chr9:36204176:+	FAM201A	17815	chr9:38621829:+	ONLY_REF_SPLICE	YES	186	14	0.04	0.36	0.0632	0.0211	CLTA->chr9:36190853-36304778:+,clathrin_light_chain_A,FAM201A->chr9:38620471-38624987:+,family_with_sequence_similarity_201_member_A	NCIH2106_LUNG	0.04	0.36	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	FRY--KCNRG	3	5	FRY	12592	chr13:32711109:+	KCNRG	73852	chr13:50590110:+	INCL_NON_REF_SPLICE	YES	9	1	0.47	0.89	0.0316	0.0527	FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+,KCNRG->chr13:50589390-50595058:+,potassium_channel_regulator	NCIH2106_LUNG	0.47	0.89	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	BZW2--HDAC9	3	1	BZW2	13598	chr7:16734629:+	HDAC9	66129	chr7:18975432:+	ONLY_REF_SPLICE	YES	88	2	0.04	0.67	0.0316	0.0105	BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+,HDAC9->chr7:18126572-19042039:+,histone_deacetylase_9	NCIH2106_LUNG	0.04	0.67	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	CDKAL1--CSGALNACT1	2	0	CDKAL1	8586	chr6:20781496:+	CSGALNACT1	34926	chr8:19363641:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-	NCIH2106_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	CNBP--POLR2B	2	0	CNBP	1147	chr3:128902619:-	POLR2B	15428	chr4:57865783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CNBP->CCHC-type_zinc_finger_nucleic_acid_binding_protein,chr3:128888327-128902765:-,POLR2B->chr4:57843888-57897334:+,polymerase_(RNA)_II_subunit_B	NCIH2106_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	EIF1AY--DAD1	2	0	EIF1AY	1163	chrY:22737773:+	DAD1	14398	chr14:23044133:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	EIF1AY->chrY:22737611-22755040:+,eukaryotic_translation_initiation_factor_1A,_Y-linked,DAD1->chr14:23033805-23058175:-,defender_against_cell_death_1	NCIH2106_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	NDUFV3--ALG13	2	0	NDUFV3	4688	chr21:44313491:+	ALG13	34533	chrX:110968162:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,ALG13->ALG13,_UDP-N-acetylglucosaminyltransferase_subunit,chrX:110909043-111003877:+	NCIH2106_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	TNIK--NCK1	2	0	TNIK	2468	chr3:171087409:-	NCK1	48531	chr3:136646826:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	TNIK->TRAF2_and_NCK_interacting_kinase,chr3:170779128-171178197:-,NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+	NCIH2106_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000904
LU65_LUNG	PVT1--RP11-89K10.1	755	303	PVT1	1202	chr8:128806980:+	RP11-89K10.1	37725	chr8:127725531:+	ONLY_REF_SPLICE	YES	81	4	0.93	1	11.1146	4.4606	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.93	1	15.5752	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	ZDHHC16--PPP1R2	596	251	ZDHHC16	1184	chr10:99206110:+	PPP1R2	20614	chr3:195245982:-	ONLY_REF_SPLICE	YES	61	155	0.93	0.85	8.7739	3.6951	ZDHHC16->chr10:99205927-99217127:+,zinc_finger_DHHC-type_containing_16,PPP1R2->chr3:195241221-195270209:-,protein_phosphatase_1_regulatory_inhibitor_subunit_2	LU65_LUNG	0.85	0.93	12.469	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	134	345	PVT1	1202	chr8:128806980:+	RP11-89K10.1	35437	chr8:127719428:+	ONLY_REF_SPLICE	YES	81	1	0.86	1	1.9727	5.0789	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.86	1	7.0516	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	125	345	PVT1	1202	chr8:128806980:+	RP11-89K10.1	35440	chr8:127719431:+	INCL_NON_REF_SPLICE	YES	81	1	0.85	1	1.8402	5.0789	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.85	1	6.9191	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	35	311	PVT1	2457	chr8:128808254:+	RP11-89K10.1	37725	chr8:127725531:+	ONLY_REF_SPLICE	YES	60	4	0.85	0.99	0.5152	4.5783	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.85	0.99	5.0935	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	MYNN--NAALADL2	99	45	MYNN	2731	chr3:169492349:+	NAALADL2	24973	chr3:174268359:+	ONLY_REF_SPLICE	YES	51	0	0.74	1	1.4574	0.6625	MYNN->chr3:169490619-169507504:+,myoneurin,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	LU65_LUNG	0.74	1	2.1199	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	20	355	PVT1	2457	chr8:128808254:+	RP11-89K10.1	35440	chr8:127719431:+	INCL_NON_REF_SPLICE	YES	60	1	0.86	1	0.2944	5.2261	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.86	1	5.5205	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	25	314	PVT1	2520	chr8:128808317:+	RP11-89K10.1	37725	chr8:127725531:+	ONLY_REF_SPLICE	YES	58	4	0.85	0.99	0.368	4.6225	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.85	0.99	4.9905	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	9	358	PVT1	2520	chr8:128808317:+	RP11-89K10.1	35440	chr8:127719431:+	INCL_NON_REF_SPLICE	YES	58	1	0.86	1	0.1325	5.2702	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.86	1	5.4027	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	5	355	PVT1	2457	chr8:128808254:+	RP11-89K10.1	35437	chr8:127719428:+	ONLY_REF_SPLICE	YES	60	1	0.86	1	0.0736	5.2261	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.86	1	5.2997	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	3	358	PVT1	2520	chr8:128808317:+	RP11-89K10.1	35437	chr8:127719428:+	ONLY_REF_SPLICE	YES	58	1	0.86	1	0.0442	5.2702	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.86	1	5.3144	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	1	308	PVT1	1202	chr8:128806980:+	RP11-89K10.1	36495	chr8:127721163:+	ONLY_REF_SPLICE	YES	81	1	0.79	1	0.0147	4.5342	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.79	1	4.5489	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	LAMA5--ITCH	67	14	LAMA5	30525	chr20:60893510:-	ITCH	52976	chr20:33026279:+	ONLY_REF_SPLICE	YES	45	28	0.64	0.74	0.9863	0.2061	LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	LU65_LUNG	0.64	0.74	1.1924	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	YDJC--MAPK1	59	27	YDJC	1757	chr22:21983597:-	MAPK1	13596	chr22:22123609:-	ONLY_REF_SPLICE	YES	134	128	0.39	0.4	0.8686	0.3975	YDJC->YdjC_homolog_(bacterial),chr22:21982378-21984353:-,MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1	LU65_LUNG	0.39	0.4	1.2661	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	PPP2R1A--FPR2	32	10	PPP2R1A	1136	chr19:52693427:+	FPR2	26063	chr19:52271898:+	ONLY_REF_SPLICE	YES	317	0	0.12	1	0.4711	0.1472	PPP2R1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:52693292-52730687:+,protein_phosphatase_2_regulatory_subunit_A,_alpha,FPR2->chr19:52255279-52273779:+,formyl_peptide_receptor_2	LU65_LUNG	0.12	1	0.6183	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	MYNN--NAALADL2	15	27	MYNN	2601	chr3:169492219:+	NAALADL2	24973	chr3:174268359:+	INCL_NON_REF_SPLICE	YES	91	0	0.32	1	0.2208	0.3975	MYNN->chr3:169490619-169507504:+,myoneurin,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	LU65_LUNG	0.32	1	0.6183	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	FBXL20--TNS4	18	7	FBXL20	2163	chr17:37557614:-	TNS4	25369	chr17:38645221:-	ONLY_REF_SPLICE	YES	3	281	0.89	0.08	0.265	0.103	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,TNS4->chr17:38632080-38657849:-,tensin_4	LU65_LUNG	0.08	0.89	0.368	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	FBXL20--TNS4	19	1	FBXL20	1351	chr17:37558426:-	TNS4	25369	chr17:38645221:-	ONLY_REF_SPLICE	YES	1	281	0.95	0.07	0.2797	0.0147	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,TNS4->chr17:38632080-38657849:-,tensin_4	LU65_LUNG	0.07	0.95	0.2944	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	YDJC--MAPK1	8	29	YDJC	2055	chr22:21983299:-	MAPK1	13596	chr22:22123609:-	ONLY_REF_SPLICE	YES	73	128	0.34	0.22	0.1178	0.4269	YDJC->YdjC_homolog_(bacterial),chr22:21982378-21984353:-,MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1	LU65_LUNG	0.22	0.34	0.5447	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	PCGF3--IDUA	13	4	PCGF3	14737	chr4:760563:+	IDUA	30630	chr4:997773:+	INCL_NON_REF_SPLICE	YES	22	1	0.44	0.94	0.1914	0.0589	PCGF3->chr4:699537-764428:+,polycomb_group_ring_finger_3,IDUA->chr4:980785-998316:+,iduronidase,_alpha-L-	LU65_LUNG	0.44	0.94	0.2503	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	MNAT1--RP11-486O13.4	13	2	MNAT1	1210	chr14:61201669:+	RP11-486O13.4	17049	chr14:70920226:-	ONLY_REF_SPLICE	YES	38	0	0.28	1	0.1914	0.0294	MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+,RP11-486O13.4->chr14:70892529-71014181:-	LU65_LUNG	0.28	1	0.2208	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	EDC3--UBL7	8	6	EDC3	8997	chr15:74963796:-	UBL7	21146	chr15:74751237:-	ONLY_REF_SPLICE	YES	31	29	0.31	0.33	0.1178	0.0883	EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,UBL7->Oncogene{Bushman},chr15:74738318-74753523:-,ubiquitin_like_7	LU65_LUNG	0.31	0.33	0.2061	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	HNRNPF--RP11-517P14.2	8	1	HNRNPF	2450	chr10:43903165:-	RP11-517P14.2	12653	chr10:43917118:+	ONLY_REF_SPLICE	YES	20	3	0.31	0.75	0.1178	0.0147	LOCAL_INVERSION:-:+:[11572],HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,RP11-517P14.2->chr10:43916186-43917548:+	LU65_LUNG	0.31	0.75	0.1325	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	HNRNPF--RP11-517P14.2	7	0	HNRNPF	1036	chr10:43904579:-	RP11-517P14.2	12653	chr10:43917118:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.103	0	LOCAL_INVERSION:-:+:[11572],HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,RP11-517P14.2->chr10:43916186-43917548:+	LU65_LUNG	1	1	0.103	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	TFDP2--PVT1	7	0	TFDP2	18186	chr3:141688915:-	PVT1	40024	chr8:128902835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.103	0	TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	LU65_LUNG	1	1	0.103	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	GAR1--CCDC109B	3	0	GAR1	3994	chr4:110740216:+	CCDC109B	13494	chr4:110580167:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0442	0	GAR1->GAR1_ribonucleoprotein,chr4:110736666-110745893:+,CCDC109B->chr4:110481361-110609874:+,coiled-coil_domain_containing_109B	LU65_LUNG	1	1	0.0442	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	ATP5J2--SAE1	2	0	ATP5J2	1203	chr7:99063752:-	SAE1	21953	chr19:47700490:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	ATP5J2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F2,chr7:99046098-99063954:-,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	LU65_LUNG	1	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	FDPS--STMN1	2	0	FDPS	3847	chr1:155282186:+	STMN1	16467	chr1:26228173:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,STMN1->chr1:26210672-26233482:-,stathmin_1	LU65_LUNG	1	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	HNRNPF--RP11-517P14.2	2	0	HNRNPF	1077	chr10:43904538:-	RP11-517P14.2	12653	chr10:43917118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	LOCAL_INVERSION:-:+:[11572],HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,RP11-517P14.2->chr10:43916186-43917548:+	LU65_LUNG	1	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	AGO2--SLC45A4	1	1	AGO2	5900	chr8:141582911:-	SLC45A4	28122	chr8:142264728:-	ONLY_REF_SPLICE	YES	35	0	0.05	1	0.0147	0.0147	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4	LU65_LUNG	0.05	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000438
KPMRTRY_SOFT_TISSUE	CBX5--LLPH	191	130	CBX5	4174	chr12:54651298:-	LLPH	23040	chr12:66522893:-	ONLY_REF_SPLICE	YES	149	21	0.68	0.94	3.2912	2.2401	CBX5->chr12:54624724-54673886:-,chromobox_5,LLPH->LLP_homolog,_long-term_synaptic_facilitation,chr12:66516842-66524548:-	KPMRTRY_SOFT_TISSUE	0.68	0.94	5.5313	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	ZEB1--SVILP1	147	126	ZEB1	13385	chr10:31750166:+	SVILP1	45103	chr10:31005856:+	ONLY_REF_SPLICE	YES	364	22	0.43	0.93	2.533	2.1711	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,SVILP1->chr10:30960495-31006195:+,supervillin_pseudogene_1	KPMRTRY_SOFT_TISSUE	0.43	0.93	4.7041	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	NR2F1-AS1--FAM172A	34	63	NR2F1-AS1	3151	chr5:92916173:-	FAM172A	38318	chr5:92956835:-	ONLY_REF_SPLICE	YES	68	61	0.59	0.61	0.5859	1.0856	LOCAL_REARRANGEMENT:-:[32421],NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	KPMRTRY_SOFT_TISSUE	0.59	0.61	1.6715	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	NR2F1-AS1--FAM172A	18	13	NR2F1-AS1	2476	chr5:92916848:-	FAM172A	38318	chr5:92956835:-	ONLY_REF_SPLICE	YES	42	61	0.42	0.34	0.3102	0.224	LOCAL_REARRANGEMENT:-:[32421],NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	KPMRTRY_SOFT_TISSUE	0.34	0.42	0.5342	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	FAM222B--NUFIP2	6	49	FAM222B	5825	chr17:27117396:-	NUFIP2	21578	chr17:27594548:-	ONLY_REF_SPLICE	YES	28	106	0.66	0.34	0.1034	0.8443	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2	KPMRTRY_SOFT_TISSUE	0.34	0.66	0.9477	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	FAM222B--NUFIP2	13	17	FAM222B	2441	chr17:27169700:-	NUFIP2	21578	chr17:27594548:-	ONLY_REF_SPLICE	YES	3	106	0.91	0.22	0.224	0.2929	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2	KPMRTRY_SOFT_TISSUE	0.22	0.91	0.5169	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	FAM222B--NUFIP2	5	40	FAM222B	4726	chr17:27139227:-	NUFIP2	21578	chr17:27594548:-	ONLY_REF_SPLICE	YES	29	106	0.61	0.3	0.0862	0.6892	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2	KPMRTRY_SOFT_TISSUE	0.3	0.61	0.7754	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	CBX5--LLPH	1	41	CBX5	4174	chr12:54651298:-	LLPH	24258	chr12:66517798:-	ONLY_REF_SPLICE	YES	149	824	0.22	0.05	0.0172	0.7065	CBX5->chr12:54624724-54673886:-,chromobox_5,LLPH->LLP_homolog,_long-term_synaptic_facilitation,chr12:66516842-66524548:-	KPMRTRY_SOFT_TISSUE	0.05	0.22	0.7237	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	AP003900.6--AC008132.1	7	6	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1206	0.1034	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KPMRTRY_SOFT_TISSUE	1	1	0.224	TRUE	0	0	0	16	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	FAM222B--NUFIP2	2	21	FAM222B	3499	chr17:27161311:-	NUFIP2	21578	chr17:27594548:-	ONLY_REF_SPLICE	YES	10	106	0.7	0.18	0.0345	0.3619	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2	KPMRTRY_SOFT_TISSUE	0.18	0.7	0.3964	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	UCK2--RP11-375H19.2	6	2	UCK2	1402	chr1:165797169:+	RP11-375H19.2	21465	chr1:166051842:+	ONLY_REF_SPLICE	YES	80	0	0.09	1	0.1034	0.0345	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,RP11-375H19.2->chr1:166050420-166056720:+	KPMRTRY_SOFT_TISSUE	0.09	1	0.1379	TRUE	0	4	0	1	4	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	AP003900.6--AC008132.1	5	2	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	5	1	0.58	0.0862	0.0345	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KPMRTRY_SOFT_TISSUE	0.58	1	0.1207	TRUE	0	0	0	13	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	UCK2--RP11-375H19.2	5	0	UCK2	1402	chr1:165797169:+	RP11-375H19.2	22592	chr1:166056324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0862	0	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,RP11-375H19.2->chr1:166050420-166056720:+	KPMRTRY_SOFT_TISSUE	1	1	0.0862	TRUE	0	4	0	1	4	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	SLC35A3--AGL	3	5	SLC35A3	10358	chr1:100483371:+	AGL	30151	chr1:100343197:+	ONLY_REF_SPLICE	YES	24	25	0.25	0.24	0.0517	0.0862	LOCAL_REARRANGEMENT:+:[45766],SLC35A3->chr1:100435345-100492535:+,solute_carrier_family_35_member_A3,AGL->amylo-alpha-1,_6-glucosidase,_4-alpha-glucanotransferase,chr1:100315640-100389579:+	KPMRTRY_SOFT_TISSUE	0.24	0.25	0.1379	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	AP003900.6--AC008132.1	3	3	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	5	1	0.55	0.0517	0.0517	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KPMRTRY_SOFT_TISSUE	0.55	1	0.1034	TRUE	0	0	0	13	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	AP003900.6--AC008132.1	1	9	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0.1551	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KPMRTRY_SOFT_TISSUE	1	1	0.1723	TRUE	0	0	0	11	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	ARHGDIB--RERG	3	0	ARHGDIB	1192	chr12:15114471:-	RERG	21135	chr12:15274053:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	ARHGDIB->Rho_GDP_dissociation_inhibitor_beta,chr12:15094951-15114662:-,RERG->RAS_like_estrogen_regulated_growth_inhibitor,chr12:15260717-15501609:-	KPMRTRY_SOFT_TISSUE	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	AP003900.6--AC008132.1	1	7	AP003900.6	2187	chr21:11172043:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0172	0.1206	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KPMRTRY_SOFT_TISSUE	1	1	0.1378	TRUE	0	0	0	3	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	NR2F1-AS1--FAM172A	2	1	NR2F1-AS1	1320	chr5:92921035:-	FAM172A	38318	chr5:92956835:-	ONLY_REF_SPLICE	YES	3	61	0.5	0.05	0.0345	0.0172	LOCAL_REARRANGEMENT:-:[32421],NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	KPMRTRY_SOFT_TISSUE	0.05	0.5	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	RP11-53O19.1--PRPF40A	2	0	RP11-53O19.1	1136	chr5:44808744:-	PRPF40A	16889	chr2:153551136:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	RP11-53O19.1->chr5:44745002-44808879:-,PRPF40A->chr2:153508107-153574511:-,pre-mRNA_processing_factor_40_homolog_A	KPMRTRY_SOFT_TISSUE	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	RSU1--FAM20B	2	0	RSU1	6309	chr10:16794538:-	FAM20B	16751	chr1:179012850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	RSU1->Ras_suppressor_protein_1,chr10:16632610-16859527:-,FAM20B->chr1:178994939-179045697:+,family_with_sequence_similarity_20_member_B	KPMRTRY_SOFT_TISSUE	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-001109
NCIH1048_LUNG	EFTUD2--PLCD3	22	9	EFTUD2	20380	chr17:42941023:-	PLCD3	39710	chr17:43196410:-	ONLY_REF_SPLICE	YES	198	18	0.14	0.63	0.2479	0.1014	{Klijn_CCL:Lung=1},EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,PLCD3->chr17:43186335-43210721:-,phospholipase_C_delta_3	NCIH1048_LUNG	0.14	0.63	0.3493	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	PRMT3--NAV2	8	2	PRMT3	12310	chr11:20429578:+	NAV2	45529	chr11:20057505:+	ONLY_REF_SPLICE	YES	42	28	0.19	0.26	0.0902	0.0225	PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3,NAV2->chr11:19372271-20143144:+,neuron_navigator_2	NCIH1048_LUNG	0.19	0.26	0.1127	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	USPL1--LINC00401	5	4	USPL1	4824	chr13:31205611:+	LINC00401	15431	chr13:69885467:+	INCL_NON_REF_SPLICE	YES	17	0	0.35	1	0.0563	0.0451	USPL1->chr13:31191830-31233686:+,ubiquitin_specific_peptidase_like_1,LINC00401->chr13:69885465-69896233:+	NCIH1048_LUNG	0.35	1	0.1014	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	ZBTB20--TIGIT	4	3	ZBTB20	36998	chr3:114099064:-	TIGIT	50500	chr3:114014392:+	ONLY_REF_SPLICE	YES	9	0	0.44	1	0.0451	0.0338	LOCAL_INVERSION:-:+:[27806],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,TIGIT->T-cell_immunoreceptor_with_Ig_and_ITIM_domains,chr3:113995760-114029135:+	NCIH1048_LUNG	0.44	1	0.0789	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	USP54--TTC18	4	1	USP54	10006	chr10:75335270:-	TTC18	53041	chr10:75059423:-	ONLY_REF_SPLICE	YES	10	4	0.33	0.56	0.0451	0.0113	USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,TTC18->chr10:75013517-75118617:-	NCIH1048_LUNG	0.33	0.56	0.0564	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	AC005152.2--LINC00511	3	3	AC005152.2	4396	chr17:70137826:-	LINC00511	51836	chr17:70400957:-	ONLY_REF_SPLICE	YES	0	33	1	0.15	0.0338	0.0338	AC005152.2->chr17:70033455-70217977:-,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	NCIH1048_LUNG	0.15	1	0.0676	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	GATAD2A--NCAN	2	1	GATAD2A	1313	chr19:19496947:+	NCAN	26944	chr19:19327756:+	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0225	0.0113	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,NCAN->chr19:19322782-19363042:+,neurocan	NCIH1048_LUNG	0.16	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	UHRF1BP1L--RP11-175P13.3	2	1	UHRF1BP1L	1257	chr12:100536370:-	RP11-175P13.3	36274	chr12:100574494:-	ONLY_REF_SPLICE	YES	32	18	0.09	0.14	0.0225	0.0113	LOCAL_REARRANGEMENT:-:[30348],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,RP11-175P13.3->chr12:100566974-100593561:-	NCIH1048_LUNG	0.09	0.14	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	FANCD2--RARS	2	0	FANCD2	35472	chr3:10133936:+	RARS	50212	chr5:167920899:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+,RARS->arginyl-tRNA_synthetase,chr5:167913450-167946304:+	NCIH1048_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	RP1-197B17.3--RHOA	2	0	RP1-197B17.3	1079	chr12:48099946:+	RHOA	16496	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RP1-197B17.3->chr12:48099868-48136077:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	NCIH1048_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	RP11-1379J22.5--WDR89	2	0	RP11-1379J22.5	1720	chr5:179085482:+	WDR89	9629	chr14:64066691:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RP11-1379J22.5->chr5:179084763-179091433:+,WDR89->WD_repeat_domain_89,chr14:64063757-64108579:-	NCIH1048_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	RP11-510H23.1--GTF2H5	2	0	RP11-510H23.1	1217	chr6:125283969:-	GTF2H5	16621	chr6:158613009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RP11-510H23.1->chr6:125230239-125284185:-,GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5	NCIH1048_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	SPECC1L--SMARCB1	2	0	SPECC1L	1166	chr22:24666951:+	SMARCB1	36752	chr22:24175759:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,SMARCB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_b,_member_1,chr22:24129150-24176703:+	NCIH1048_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	ST14--APLP2	2	0	ST14	1499	chr11:130029955:+	APLP2	38234	chr11:130010293:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_REARRANGEMENT:+:[14758],ST14->chr11:130029457-130080271:+,suppression_of_tumorigenicity_14,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	NCIH1048_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	C5orf46--RP11-373N22.3	1	3	C5orf46	2252	chr5:147281192:-	RP11-373N22.3	12824	chr5:147670558:-	ONLY_REF_SPLICE	YES	3	2	0.57	0.67	0.0113	0.0338	C5orf46->chr5:147260289-147286101:-,chromosome_5_open_reading_frame_46,RP11-373N22.3->chr5:147647870-147763346:-	NCIH1048_LUNG	0.57	0.67	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	GATAD2A--NCAN	1	3	GATAD2A	4016	chr19:19538801:+	NCAN	26944	chr19:19327756:+	ONLY_REF_SPLICE	YES	22	0	0.15	1	0.0113	0.0338	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,NCAN->chr19:19322782-19363042:+,neurocan	NCIH1048_LUNG	0.15	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	GATAD2A--NCAN	1	3	GATAD2A	5105	chr19:19547028:+	NCAN	26944	chr19:19327756:+	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.0113	0.0338	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,NCAN->chr19:19322782-19363042:+,neurocan	NCIH1048_LUNG	0.16	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	CCSER1--MMRN1	1	2	CCSER1	1297	chr4:91048982:+	MMRN1	41500	chr4:90815875:+	ONLY_REF_SPLICE	YES	14	0	0.18	1	0.0113	0.0225	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	NCIH1048_LUNG	0.18	1	0.0338	TRUE	0	3	0	5	3	TRUE	ACH-000866
LN340_CENTRAL_NERVOUS_SYSTEM	KMT2C--NCAPG2	85	74	KMT2C	1380	chr7:152132711:-	NCAPG2	109192	chr7:158424409:-	ONLY_REF_SPLICE	YES	11	378	0.94	0.3	1.0354	0.9014	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,NCAPG2->chr7:158424003-158497520:-,non-SMC_condensin_II_complex_subunit_G2	LN340_CENTRAL_NERVOUS_SYSTEM	0.3	0.94	1.9368	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	USP39--SH2D6	64	38	USP39	10516	chr2:85858069:+	SH2D6	28459	chr2:85655707:+	ONLY_REF_SPLICE	YES	227	0	0.31	1	0.7796	0.4629	USP39->Oncogene{Bushman},chr2:85829979-85876403:+,ubiquitin_specific_peptidase_39,SH2D6->SH2_domain_containing_6,chr2:85645844-85664152:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.31	1	1.2425	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	USP39--SH2D6	21	20	USP39	10516	chr2:85858069:+	SH2D6	29247	chr2:85656495:+	ONLY_REF_SPLICE	YES	227	3	0.15	0.93	0.2558	0.2436	USP39->Oncogene{Bushman},chr2:85829979-85876403:+,ubiquitin_specific_peptidase_39,SH2D6->SH2_domain_containing_6,chr2:85645844-85664152:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.15	0.93	0.4994	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	KMT2C--NCAPG2	4	80	KMT2C	1380	chr7:152132711:-	NCAPG2	105333	chr7:158437080:-	ONLY_REF_SPLICE	YES	11	431	0.88	0.16	0.0487	0.9745	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,NCAPG2->chr7:158424003-158497520:-,non-SMC_condensin_II_complex_subunit_G2	LN340_CENTRAL_NERVOUS_SYSTEM	0.16	0.88	1.0232	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	PDCD2L--LSM14A	5	0	PDCD2L	4129	chr19:34904752:+	LSM14A	10802	chr19:34685383:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0609	0	PDCD2L->chr19:34895289-34917073:+,programmed_cell_death_2-like,LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	TTC37--SPATA9	5	0	TTC37	1072	chr5:94890640:-	SPATA9	53630	chr5:94988913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0609	0	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},LOCAL_REARRANGEMENT:-:[97174],TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,SPATA9->chr5:94987885-95034415:-,spermatogenesis_associated_9	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	VIM--PPIA	5	0	VIM	2122	chr10:17271379:+	PPIA	12215	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	VIM->chr10:17270258-17279592:+,vimentin,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0609	TRUE	0	0	0	6	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	AL355490.1--EXOSC1	2	0	AL355490.1	1052	chr10:99185780:-	EXOSC1	12530	chr10:99197507:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	GTEx_v2:{count=3;pct=0.03%;dist=Breast_-_Mammary_Tissue=1,Lung=1,Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:-:[10068],AL355490.1->chr10:99179228-99185831:-,EXOSC1->chr10:99195899-99205774:-,exosome_component_1	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	AP2B1--TCP1	2	0	AP2B1	6077	chr17:33925354:+	TCP1	44312	chr6:160201119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	AP2B1->adaptor_related_protein_complex_2_beta_1_subunit,chr17:33905065-34053436:+,TCP1->chr6:160199530-160210781:-,t-complex_1	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	DCUN1D4--ZNF286A	2	0	DCUN1D4	1268	chr4:52709433:+	ZNF286A	34938	chr17:15619373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4,ZNF286A->chr17:15602891-15640874:+,chr17:15603006-15648092:+,zinc_finger_protein_286A	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	IARS--DENND2A	2	0	IARS	3934	chr9:95050073:-	DENND2A	42608	chr7:140302342:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,DENND2A->DENN_domain_containing_2A,chr7:140218220-140373793:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	INVS--DENND1A	2	0	INVS	5175	chr9:102888831:+	DENND1A	31089	chr9:126641300:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	INVS->chr9:102861538-103063282:+,inversin,DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	IQCG--HACE1	2	0	IQCG	15730	chr3:197639546:-	HACE1	44409	chr6:105225192:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	IQCG->IQ_motif_containing_G,chr3:197615946-197687013:-,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	JKAMP--SNHG1	2	0	JKAMP	1151	chr14:59951311:+	SNHG1	15163	chr11:62622023:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	JKAMP->JNK1/MAPK8-associated_membrane_protein,chr14:59951161-59972128:+,SNHG1->chr11:62619460-62623386:-,small_nucleolar_RNA_host_gene_1	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	KM-PA-2--FOXK2	2	0	KM-PA-2	1054	chr8:145331100:-	FOXK2	13106	chr17:80529600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	KM-PA-2->chr8:145317003-145331153:-,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	LINC00886--RSRC1	2	0	LINC00886	1176	chr3:156534676:-	RSRC1	24469	chr3:158072646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	LINC00886->chr3:156465135-156534851:-,long_intergenic_non-protein_coding_RNA_886,RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MIR3654--TMEM165	2	0	MIR3654	2319	chr11:62356503:-	TMEM165	23453	chr4:56277781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	MIR3654->chr11:62327075-62359003:-,microRNA_3654,TMEM165->chr4:56262124-56319564:+,transmembrane_protein_165	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RBM17--AHSA2	2	0	RBM17	13284	chr10:6157274:+	AHSA2	19994	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	RBM17->RNA_binding_motif_protein_17,chr10:6130950-6159420:+,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RBM23--RPS12	2	0	RBM23	6943	chr14:23378692:-	RPS12	19602	chr6:133137600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	RBM23->RNA_binding_motif_protein_23,chr14:23369854-23388393:-,RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RBM6--TBC1D8B	2	0	RBM6	3185	chr3:50000118:+	TBC1D8B	49559	chrX:106093255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,TBC1D8B->TBC1_domain_family_member_8B,chrX:106045910-106119375:+	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-163F15.1--RP11-215N21.1	2	0	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	5	0	7	5	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP6-99M1.2--KDM6A	2	0	RP6-99M1.2	1489	chrX:45629189:-	KDM6A	9263	chrX:44820529:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	RP6-99M1.2->chrX:45604639-45629677:-,KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	SDCBP2-AS1--NSFL1C	2	0	SDCBP2-AS1	1125	chr20:1306173:+	NSFL1C	27361	chr20:1426475:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_INVERSION:+:-:[63429],SDCBP2-AS1->SDCBP2_antisense_RNA_1,chr20:1306049-1359378:+,NSFL1C->NSFL1_cofactor,chr20:1422807-1454487:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	SOCS2--YBX1	2	0	SOCS2	6360	chr12:93968949:+	YBX1	13374	chr1:43149074:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	SOCS2->Oncogene{Bushman},chr12:93963590-93977263:+,suppressor_of_cytokine_signaling_2,YBX1->Oncogene{Bushman},Y-box_binding_protein_1,chr1:43148098-43168020:+	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	SPG20--DCLK1	2	0	SPG20	2308	chr13:36920719:-	DCLK1	24707	chr13:36521594:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	SPG20->chr13:36875775-36944317:-,spastic_paraplegia_20_(Troyer_syndrome),DCLK1->chr13:36345478-36705443:-,doublecortin_like_kinase_1	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOA6--SPDEF	146	70	NCOA6	10263	chr20:33356267:-	SPDEF	33635	chr6:34512261:-	ONLY_REF_SPLICE	YES	27	0	0.89	1	1.9752	0.947	NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6,SPDEF->SAM_pointed_domain_containing_ETS_transcription_factor,chr6:34505579-34524110:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	2.9222	TRUE	0	0	0	1	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF277--LMO3	33	2	ZNF277	1220	chr7:111846862:+	LMO3	26693	chr12:16753802:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4464	0.0271	ZNF277->chr7:111846643-111983151:+,zinc_finger_protein_277,LMO3->LIM_domain_only_3,Oncogene{Bushman},chr12:16701307-16763528:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4735	TRUE	0	0	0	1	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--ERBB4	25	13	IKZF2	5217	chr2:214012432:-	ERBB4	30646	chr2:212989628:-	ONLY_REF_SPLICE	YES	43	0	0.47	1	0.3382	0.1759	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.5141	TRUE	0	1	0	2	1	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF277--LMO3	7	2	ZNF277	1220	chr7:111846862:+	LMO3	22727	chr12:16759066:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0947	0.0271	ZNF277->chr7:111846643-111983151:+,zinc_finger_protein_277,LMO3->LIM_domain_only_3,Oncogene{Bushman},chr12:16701307-16763528:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1218	TRUE	0	0	0	1	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--DAP3	3	0	ZNF738	7035	chr19:21558766:+	DAP3	28866	chr1:155708400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0406	TRUE	0	0	0	4	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATG4C--SNX1	2	0	ATG4C	1091	chr1:63249896:+	SNX1	20670	chr15:64404772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	ATG4C->autophagy_related_4C_cysteine_peptidase,chr1:63249806-63331184:+,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--PGBD2	2	0	CPSF6	11046	chr12:69656342:+	PGBD2	23586	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	7	0	6	2	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--U2AF1	2	0	RCC1	2920	chr1:28835417:+	U2AF1	29293	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	2	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RHOA--QRICH1	2	0	RHOA	2179	chr3:49449253:-	QRICH1	17997	chr3:49114471:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	2	0	4	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--ENO1	2	0	ZNF738	7035	chr19:21558766:+	ENO1	21893	chr1:8925541:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000101
GP2D_LARGE_INTESTINE	RNASEH2A--ASNA1	481	230	RNASEH2A	1927	chr19:12918320:+	ASNA1	10789	chr19:12856191:+	ONLY_REF_SPLICE	YES	295	310	0.71	0.7	5.1256	2.4509	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[58257],RNASEH2A->chr19:12917394-12924452:+,ribonuclease_H2_subunit_A,ASNA1->arsA_arsenite_transporter,_ATP-binding,_homolog_1_(bacterial),chr19:12847953-12859137:+	GP2D_LARGE_INTESTINE	0.7	0.71	7.5765	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	CAPZB--TMCO4	78	47	CAPZB	5670	chr1:19746155:-	TMCO4	35881	chr1:20027378:-	ONLY_REF_SPLICE	YES	961	47	0.12	0.73	0.8312	0.5008	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,TMCO4->chr1:20008706-20126438:-,transmembrane_and_coiled-coil_domains_4	GP2D_LARGE_INTESTINE	0.12	0.73	1.332	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	ATP6V0E1--FAM153B	16	21	ATP6V0E1	2256	chr5:172421825:+	FAM153B	14494	chr5:175501639:+	ONLY_REF_SPLICE	YES	251	3	0.13	0.93	0.1705	0.2238	ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+,FAM153B->chr5:175487692-175559261:+,family_with_sequence_similarity_153_member_B	GP2D_LARGE_INTESTINE	0.13	0.93	0.3943	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	ATP6V0E1--FAM153B	16	9	ATP6V0E1	2256	chr5:172421825:+	FAM153B	20704	chr5:175520198:+	ONLY_REF_SPLICE	YES	251	8	0.09	0.76	0.1705	0.0959	ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+,FAM153B->chr5:175487692-175559261:+,family_with_sequence_similarity_153_member_B	GP2D_LARGE_INTESTINE	0.09	0.76	0.2664	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	ATP6V0E1--FAM153B	2	21	ATP6V0E1	2256	chr5:172421825:+	FAM153B	11453	chr5:175490712:+	ONLY_REF_SPLICE	YES	251	0	0.08	1	0.0213	0.2238	ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+,FAM153B->chr5:175487692-175559261:+,family_with_sequence_similarity_153_member_B	GP2D_LARGE_INTESTINE	0.08	1	0.2451	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	SLC25A46--CHSY3	6	1	SLC25A46	7616	chr5:110083964:+	CHSY3	24833	chr5:129519922:+	ONLY_REF_SPLICE	YES	39	0	0.15	1	0.0639	0.0107	SLC25A46->chr5:110073837-110100857:+,solute_carrier_family_25_member_46,CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+	GP2D_LARGE_INTESTINE	0.15	1	0.0746	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	RNF13--ATP2C1	2	0	RNF13	1646	chr3:149531140:+	ATP2C1	29245	chr3:130659474:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+	GP2D_LARGE_INTESTINE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	RP11-435O5.2--BTBD9	2	0	RP11-435O5.2	1073	chr9:98189006:-	BTBD9	19747	chr6:38256237:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RP11-435O5.2->chr9:98177116-98189078:-,BTBD9->BTB_domain_containing_9,chr6:38136227-38607924:-	GP2D_LARGE_INTESTINE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000982
HCC2814_LUNG	ABCC1--C16orf45	185	191	ABCC1	38158	chr16:16232415:+	C16orf45	51377	chr16:15661840:+	ONLY_REF_SPLICE	YES	474	5	0.44	0.99	1.967	2.0308	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,C16orf45->chr16:15528152-15718885:+,chromosome_16_open_reading_frame_45	HCC2814_LUNG	0.44	0.99	3.9978	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	FARS2--CDYL	82	39	FARS2	1617	chr6:5261893:+	CDYL	23182	chr6:4891947:+	ONLY_REF_SPLICE	YES	54	19	0.69	0.86	0.8719	0.4147	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,CDYL->chr6:4706393-4955785:+,chromodomain_protein,_Y-like	HCC2814_LUNG	0.69	0.86	1.2866	TRUE	0	1	0	2	1	TRUE	ACH-000690
HCC2814_LUNG	ABCC1--C16orf45	10	27	ABCC1	36963	chr16:16230501:+	C16orf45	51377	chr16:15661840:+	ONLY_REF_SPLICE	YES	567	5	0.06	0.88	0.1063	0.2871	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,C16orf45->chr16:15528152-15718885:+,chromosome_16_open_reading_frame_45	HCC2814_LUNG	0.06	0.88	0.3934	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	TMEM206--RP11-438F14.3	11	14	TMEM206	10558	chr1:212548535:-	RP11-438F14.3	17096	chr1:248725901:+	ONLY_REF_SPLICE	YES	245	0	0.09	1	0.117	0.1489	TMEM206->chr1:212537273-212588243:-,transmembrane_protein_206,RP11-438F14.3->chr1:248712057-248727140:+	HCC2814_LUNG	0.09	1	0.2659	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	UBE2B--TCF7	14	1	UBE2B	1461	chr5:133707330:+	TCF7	17377	chr5:133473750:+	ONLY_REF_SPLICE	YES	11	6	0.58	0.71	0.1489	0.0106	UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B,TCF7->chr5:133450402-133487556:+,transcription_factor_7_(T-cell_specific,_HMG-box)	HCC2814_LUNG	0.58	0.71	0.1595	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	STK3--MYH15	12	7	STK3	29829	chr8:99538970:-	MYH15	39988	chr3:108229434:-	ONLY_REF_SPLICE	YES	199	0	0.09	1	0.1276	0.0744	STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,MYH15->chr3:108099216-108248169:-,myosin,_heavy_chain_15	HCC2814_LUNG	0.09	1	0.202	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	TMEM206--RP11-438F14.3	7	14	TMEM206	10558	chr1:212548535:-	RP11-438F14.3	16013	chr1:248712065:+	INCL_NON_REF_SPLICE	YES	245	0	0.08	1	0.0744	0.1489	TMEM206->chr1:212537273-212588243:-,transmembrane_protein_206,RP11-438F14.3->chr1:248712057-248727140:+	HCC2814_LUNG	0.08	1	0.2233	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	CCSER1--MMRN1	9	5	CCSER1	10695	chr4:91389505:+	MMRN1	44504	chr4:90830427:+	ONLY_REF_SPLICE	YES	13	0	0.52	1	0.0957	0.0532	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	HCC2814_LUNG	0.52	1	0.1489	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	NOTCH2NL--FLG-AS1	7	7	NOTCH2NL	1318	chr1:145209436:+	FLG-AS1	19610	chr1:152221371:+	ONLY_REF_SPLICE	YES	111	1	0.11	0.93	0.0744	0.0744	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,FLG-AS1->FLG_antisense_RNA_1,chr1:152140601-152339163:+	HCC2814_LUNG	0.11	0.93	0.1488	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	7	3	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0744	0.0319	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	0.67	1	0.1063	TRUE	0	0	0	16	0	TRUE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	2	16	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	10	0	0.64	1	0.0213	0.1701	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	0.64	1	0.1914	TRUE	0	0	0	11	0	TRUE	ACH-000690
HCC2814_LUNG	RP11-23D24.2--PLCH1	3	12	RP11-23D24.2	1333	chr3:153697643:-	PLCH1	45631	chr3:155093578:-	INCL_NON_REF_SPLICE	NO	11	0	0.58	1	0.0319	0.1276	RP11-23D24.2->chr3:153102723-153697975:-,PLCH1->chr3:155093369-155462856:-,phospholipase_C_eta_1	HCC2814_LUNG	0.58	1	0.1595	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	TXNRD1--RP11-818F20.4	6	0	TXNRD1	20839	chr12:104715094:+	RP11-818F20.4	36886	chr12:104571295:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0638	0	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	HCC2814_LUNG	1	1	0.0638	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	3	10	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	8	0	0.62	1	0.0319	0.1063	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	0.62	1	0.1382	TRUE	0	0	0	12	0	TRUE	ACH-000690
HCC2814_LUNG	FARS2--CDYL	5	2	FARS2	1315	chr6:5261591:+	CDYL	23182	chr6:4891947:+	ONLY_REF_SPLICE	YES	16	19	0.3	0.27	0.0532	0.0213	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,CDYL->chr6:4706393-4955785:+,chromodomain_protein,_Y-like	HCC2814_LUNG	0.27	0.3	0.0745	TRUE	0	1	0	2	1	TRUE	ACH-000690
HCC2814_LUNG	ALDOA--KRT17	5	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	HCC2814_LUNG	1	1	0.0532	TRUE	0	0	0	10	0	TRUE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	2	5	AP003900.6	2187	chr21:11172043:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	NO	8	0	0.47	1	0.0213	0.0532	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	0.47	1	0.0745	TRUE	0	0	0	3	0	TRUE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	3	0	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0319	0	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	1	1	0.0319	TRUE	0	0	0	13	0	TRUE	ACH-000690
HCC2814_LUNG	STOML1--LRP1B	3	0	STOML1	1072	chr15:74286892:-	LRP1B	97148	chr2:141110641:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0319	0	STOML1->chr15:74275547-74286963:-,stomatin_like_1,LRP1B->ArcherDX_panel,FoundationOne_panel,LDL_receptor_related_protein_1B,chr2:140988992-142889270:-	HCC2814_LUNG	1	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	TP63--TPRG1	3	0	TP63	4502	chr3:189507631:+	TPRG1	55724	chr3:189038415:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0319	0	TP63->chr3:189349205-189615068:+,tumor_protein_p63,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	HCC2814_LUNG	1	1	0.0319	TRUE	0	4	0	3	0	TRUE	ACH-000690
HCC2814_LUNG	TP63--TPRG1	3	0	TP63	5757	chr3:189526315:+	TPRG1	55724	chr3:189038415:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0319	0	TP63->chr3:189349205-189615068:+,tumor_protein_p63,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	HCC2814_LUNG	1	1	0.0319	TRUE	0	3	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	IMMP2L--DOCK4	2	2	IMMP2L	3872	chr7:111161369:-	DOCK4	20059	chr7:111644186:-	ONLY_REF_SPLICE	YES	33	3	0.11	0.57	0.0213	0.0213	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	HCC2814_LUNG	0.11	0.57	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	2	0	AP003900.6	1122	chr21:11169841:+	AC008132.1	13301	chr22:18734614:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	C9orf3--SLC35D2	2	0	C9orf3	24370	chr9:97767898:+	SLC35D2	44622	chr9:99126832:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,SLC35D2->chr9:99082988-99145992:-,solute_carrier_family_35_member_D2	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	CIT--RAB35	2	0	CIT	10167	chr12:120260624:-	RAB35	57917	chr12:120541753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase,RAB35->RAB35,_member_RAS_oncogene_family,chr12:120532899-120555306:-	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	DISP1--DUSP10	2	0	DISP1	2077	chr1:222997287:+	DUSP10	21882	chr1:221913129:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	DISP1->chr1:222988406-223179337:+,dispatched_RND_transporter_family_member_1,DUSP10->Oncogene{Bushman},chr1:221874766-221915518:-,dual_specificity_phosphatase_10	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	12	0	TRUE	ACH-000690
HCC2814_LUNG	ITGB4--CD151	2	0	ITGB4	8420	chr17:73728320:+	CD151	34231	chr11:836063:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	HGNC_GENEFAM,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4,CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	NRF1--AHCYL2	2	0	NRF1	1111	chr7:129251665:+	AHCYL2	29448	chr7:129019482:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	NRF1->Oncogene{Bushman},chr7:129251555-129396922:+,nuclear_respiratory_factor_1,AHCYL2->adenosylhomocysteinase_like_2,chr7:128864864-129070052:+	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	PARVB--CDK11A	2	0	PARVB	1463	chr22:44395553:+	CDK11A	33924	chr1:1654270:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	PARVB->Oncogene{Bushman},chr22:44395091-44568829:+,parvin_beta,CDK11A->Oncogene{Bushman},chr1:1634169-1655766:-,cyclin-dependent_kinase_11A	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	POU2F1--UCK2	2	0	POU2F1	1130	chr1:167190195:+	UCK2	44379	chr1:165859441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	PTPRK--CENPW	2	0	PTPRK	7241	chr6:128643184:-	CENPW	54479	chr6:126667351:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,CENPW->centromere_protein_W,chr6:126661320-126670021:+	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	SLC25A13--ACN9	2	0	SLC25A13	4550	chr7:95906508:-	ACN9	28192	chr7:96810324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,ACN9->chr7:96745902-96811075:+	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	TRIM13--DLEU2	2	0	TRIM13	2876	chr13:50571899:+	DLEU2	25015	chr13:50603628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_INVERSION:+:-:[6652],TRIM13->chr13:50570024-50594617:+,tripartite_motif_containing_13,DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding)	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	UBE2V2--RP11-347C12.1	2	0	UBE2V2	1071	chr8:48921030:+	RP11-347C12.1	19107	chr16:30246900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2,RP11-347C12.1->chr16:30234258-30265831:-	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	CCAT1--CASC8	1	2	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	41	4	0.07	0.43	0.0106	0.0213	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC2814_LUNG	0.07	0.43	0.0319	TRUE	0	7	0	14	6	TRUE	ACH-000690
HCC2814_LUNG	CCAT1--CASC8	1	2	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	41	2	0.07	0.6	0.0106	0.0213	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC2814_LUNG	0.07	0.6	0.0319	TRUE	0	26	0	18	24	TRUE	ACH-000690
HCC2814_LUNG	SLC22A23--RP3-527G5.1	1	2	SLC22A23	8751	chr6:3410422:-	RP3-527G5.1	27859	chr6:4347103:-	ONLY_REF_SPLICE	YES	78	4	0.04	0.43	0.0106	0.0213	SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23,RP3-527G5.1->chr6:4345977-4347271:-	HCC2814_LUNG	0.04	0.43	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	ATXN7--THOC7	1	1	ATXN7	3640	chr3:63884173:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	YES	0	12	1	0.14	0.0106	0.0106	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	HCC2814_LUNG	0.14	1	0.0212	TRUE	0	2	0	5	2	TRUE	ACH-000690
HCC2814_LUNG	SLC22A23--RP1-223B1.1	1	1	SLC22A23	2117	chr6:3456140:-	RP1-223B1.1	29791	chr6:3594769:-	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.0106	0.0106	SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23,RP1-223B1.1->chr6:3594481-3624981:-	HCC2814_LUNG	0.04	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000690
SLR25_KIDNEY	NME7--SERPINC1	359	25	NME7	1260	chr1:169336946:-	SERPINC1	25143	chr1:173884057:-	ONLY_REF_SPLICE	YES	2	11	0.99	0.97	4.1428	0.2885	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,SERPINC1->chr1:173872947-173886516:-,serpin_family_C_member_1	SLR25_KIDNEY	0.97	0.99	4.4313	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	IGSF3--GGT1	102	89	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	23	20	0.89	0.91	1.1771	1.027	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	SLR25_KIDNEY	0.89	0.91	2.2041	TRUE	1	1	0	8	1	TRUE	ACH-000300
SLR25_KIDNEY	UCK2--GPR161	58	51	UCK2	1402	chr1:165797169:+	GPR161	27367	chr1:168074132:-	ONLY_REF_SPLICE	YES	222	11	0.33	0.91	0.6693	0.5885	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,GPR161->G_protein-coupled_receptor_161,Oncogene{Bushman},chr1:168053997-168106821:-	SLR25_KIDNEY	0.33	0.91	1.2578	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	POU2F1--ILDR2	69	1	POU2F1	1130	chr1:167190195:+	ILDR2	44237	chr1:166927338:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7963	0.0115	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ILDR2->chr1:166882443-166944719:-,immunoglobulin_like_domain_containing_receptor_2	SLR25_KIDNEY	1	1	0.8078	TRUE	0	0	0	2	0	TRUE	ACH-000300
SLR25_KIDNEY	NME7--SERPINC1	47	27	NME7	1260	chr1:169336946:-	SERPINC1	24876	chr1:173884324:-	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.5424	0.3116	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,SERPINC1->chr1:173872947-173886516:-,serpin_family_C_member_1	SLR25_KIDNEY	0.97	1	0.854	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	POU2F1--ASTN1	46	2	POU2F1	1130	chr1:167190195:+	ASTN1	56031	chr1:176934373:-	ONLY_REF_SPLICE	YES	0	4	1	0.92	0.5308	0.0231	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ASTN1->astrotactin_1,chr1:176826438-177134109:-	SLR25_KIDNEY	0.92	1	0.5539	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	UCK2--GPR161	29	54	UCK2	1402	chr1:165797169:+	GPR161	26238	chr1:168083787:-	ONLY_REF_SPLICE	YES	222	4	0.27	0.95	0.3347	0.6232	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,GPR161->G_protein-coupled_receptor_161,Oncogene{Bushman},chr1:168053997-168106821:-	SLR25_KIDNEY	0.27	0.95	0.9579	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	IGSF3--GGT1	17	80	IGSF3	13000	chr1:117131317:-	GGT1	26901	chr22:25003923:+	INCL_NON_REF_SPLICE	YES	23	20	0.81	0.83	0.1962	0.9232	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	SLR25_KIDNEY	0.81	0.83	1.1194	TRUE	1	1	0	8	1	TRUE	ACH-000300
SLR25_KIDNEY	MGST3--ASTN1	27	2	MGST3	1433	chr1:165600530:+	ASTN1	25906	chr1:176993868:-	ONLY_REF_SPLICE	YES	19	0	0.6	1	0.3116	0.0231	MGST3->chr1:165600098-165631033:+,microsomal_glutathione_S-transferase_3,ASTN1->astrotactin_1,chr1:176826438-177134109:-	SLR25_KIDNEY	0.6	1	0.3347	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	NME7--SERPINC1	16	28	NME7	1260	chr1:169336946:-	SERPINC1	23713	chr1:173886519:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.1846	0.3231	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,SERPINC1->chr1:173872947-173886516:-,serpin_family_C_member_1	SLR25_KIDNEY	0.96	1	0.5077	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	RFWD2--UCK2	19	7	RFWD2	3205	chr1:176153769:-	UCK2	30123	chr1:165860463:+	ONLY_REF_SPLICE	YES	45	353	0.37	0.07	0.2193	0.0808	RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2,UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2	SLR25_KIDNEY	0.07	0.37	0.3001	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	NME7--SERPINC1	13	23	NME7	1260	chr1:169336946:-	SERPINC1	25147	chr1:173884053:-	INCL_NON_REF_SPLICE	YES	2	11	0.95	0.77	0.15	0.2654	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,SERPINC1->chr1:173872947-173886516:-,serpin_family_C_member_1	SLR25_KIDNEY	0.77	0.95	0.4154	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	UCK2--GPR161	3	58	UCK2	1402	chr1:165797169:+	GPR161	22942	chr1:168104274:-	ONLY_REF_SPLICE	YES	222	1	0.22	0.98	0.0346	0.6693	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,GPR161->G_protein-coupled_receptor_161,Oncogene{Bushman},chr1:168053997-168106821:-	SLR25_KIDNEY	0.22	0.98	0.7039	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	RRN3--NPIPP1	14	7	RRN3	2472	chr16:15186366:-	NPIPP1	37894	chr16:15198615:-	ONLY_REF_SPLICE	YES	178	37	0.11	0.36	0.1616	0.0808	LOCAL_REARRANGEMENT:-:[10004],RRN3->RRN3_homolog,_RNA_polymerase_I_transcription_factor,chr16:15153879-15188174:-,NPIPP1->chr16:15198178-15225458:-,nuclear_pore_complex_interacting_protein_pseudogene_1	SLR25_KIDNEY	0.11	0.36	0.2424	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	UCK2--GPR161	2	55	UCK2	1402	chr1:165797169:+	GPR161	24057	chr1:168103159:-	ONLY_REF_SPLICE	YES	222	1	0.2	0.98	0.0231	0.6347	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,GPR161->G_protein-coupled_receptor_161,Oncogene{Bushman},chr1:168053997-168106821:-	SLR25_KIDNEY	0.2	0.98	0.6578	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	EHD1--PPP2R5B	11	10	EHD1	6099	chr11:64641893:-	PPP2R5B	18634	chr11:64690461:+	INCL_NON_REF_SPLICE	YES	297	3	0.07	0.88	0.1269	0.1154	LOCAL_INVERSION:-:+:[29257],EHD1->EH_domain_containing_1,chr11:64619114-64655768:-,PPP2R5B->chr11:64685025-64701945:+,protein_phosphatase_2_regulatory_subunit_B',_beta	SLR25_KIDNEY	0.07	0.88	0.2423	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	DNM3--PAPPA2	9	9	DNM3	17413	chr1:172100428:+	PAPPA2	69515	chr1:176809309:+	ONLY_REF_SPLICE	YES	1	2	0.95	0.9	0.1039	0.1039	DNM3->chr1:171810621-172387606:+,dynamin_3,PAPPA2->Oncogene{Bushman},chr1:176432307-176814735:+,pappalysin_2	SLR25_KIDNEY	0.9	0.95	0.2078	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	NME7--SERPINC1	4	26	NME7	1260	chr1:169336946:-	SERPINC1	24947	chr1:173884253:-	INCL_NON_REF_SPLICE	YES	2	2	0.94	0.94	0.0462	0.3	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,SERPINC1->chr1:173872947-173886516:-,serpin_family_C_member_1	SLR25_KIDNEY	0.94	0.94	0.3462	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	TMCO3--HYDIN	8	5	TMCO3	1279	chr13:114145588:+	HYDIN	65627	chr16:71004662:-	ONLY_REF_SPLICE	YES	253	0	0.05	1	0.0923	0.0577	TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SLR25_KIDNEY	0.05	1	0.15	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	HYDIN--TRPM1	8	2	HYDIN	46208	chr16:71004504:-	TRPM1	119139	chr15:31355495:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0923	0.0231	HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-,TRPM1->Oncogene{Bushman},chr15:31293264-31453476:-,transient_receptor_potential_cation_channel_subfamily_M_member_1	SLR25_KIDNEY	1	1	0.1154	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	EHD1--PPP2R5B	5	11	EHD1	6099	chr11:64641893:-	PPP2R5B	18630	chr11:64690457:+	ONLY_REF_SPLICE	YES	297	3	0.05	0.84	0.0577	0.1269	LOCAL_INVERSION:-:+:[29257],EHD1->EH_domain_containing_1,chr11:64619114-64655768:-,PPP2R5B->chr11:64685025-64701945:+,protein_phosphatase_2_regulatory_subunit_B',_beta	SLR25_KIDNEY	0.05	0.84	0.1846	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	AP000525.9--LA16c-60G3.6	7	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	24	0	0.25	1	0.0808	0.0115	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SLR25_KIDNEY	0.25	1	0.0923	TRUE	0	5	0	18	5	TRUE	ACH-000300
SLR25_KIDNEY	C6orf99--SYTL3	6	5	C6orf99	2468	chr6:159294653:+	SYTL3	16254	chr6:159128262:+	ONLY_REF_SPLICE	YES	20	6	0.35	0.65	0.0692	0.0577	C6orf99->chr6:159290971-159331385:+,chromosome_6_open_reading_frame_99,SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3	SLR25_KIDNEY	0.35	0.65	0.1269	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	NME7--SERPINC1	7	1	NME7	1260	chr1:169336946:-	SERPINC1	26510	chr1:173881152:-	ONLY_REF_SPLICE	YES	2	113	0.8	0.07	0.0808	0.0115	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,SERPINC1->chr1:173872947-173886516:-,serpin_family_C_member_1	SLR25_KIDNEY	0.07	0.8	0.0923	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	SEPT11--CCNG2	7	0	SEPT11	1228	chr4:77871083:+	CCNG2	30949	chr4:78079686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0808	0	SEPT11->chr4:77870856-77961537:+,septin_11,CCNG2->chr4:78078304-78354542:+,cyclin_G2	SLR25_KIDNEY	1	1	0.0808	TRUE	0	1	0	4	1	TRUE	ACH-000300
SLR25_KIDNEY	SFT2D2--DNM3	5	7	SFT2D2	8585	chr1:168212307:+	DNM3	33781	chr1:172037959:+	INCL_NON_REF_SPLICE	YES	22	2	0.35	0.86	0.0577	0.0808	SFT2D2->SFT2_domain_containing_2,chr1:168195176-168222263:+,DNM3->chr1:171810621-172387606:+,dynamin_3	SLR25_KIDNEY	0.35	0.86	0.1385	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	RP5-1070A16.1--SNX7	6	2	RP5-1070A16.1	2165	chr1:98715102:+	SNX7	11398	chr1:99150441:+	ONLY_REF_SPLICE	YES	4	96	0.67	0.08	0.0692	0.0231	RP5-1070A16.1->chr1:98676303-98738214:+,SNX7->chr1:99127236-99226056:+,sorting_nexin_7	SLR25_KIDNEY	0.08	0.67	0.0923	TRUE	0	2	0	2	2	TRUE	ACH-000300
SLR25_KIDNEY	POU2F1--ILDR2	6	1	POU2F1	1130	chr1:167190195:+	ILDR2	43142	chr1:166944554:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0.0115	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ILDR2->chr1:166882443-166944719:-,immunoglobulin_like_domain_containing_receptor_2	SLR25_KIDNEY	1	1	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	VIM--KRT18	5	0	VIM	2123	chr10:17271380:+	KRT18	12454	chr12:53342904:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0577	0	VIM->chr10:17270258-17279592:+,vimentin,KRT18->chr12:53342655-53346685:+,keratin_18	SLR25_KIDNEY	1	1	0.0577	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	POU2F1--ASTN1	3	3	POU2F1	4533	chr1:167272811:+	ASTN1	56031	chr1:176934373:-	ONLY_REF_SPLICE	YES	2	4	0.75	0.6	0.0346	0.0346	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ASTN1->astrotactin_1,chr1:176826438-177134109:-	SLR25_KIDNEY	0.6	0.75	0.0692	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	DNM3--PAPPA2	1	9	DNM3	17413	chr1:172100428:+	PAPPA2	68347	chr1:176805771:+	ONLY_REF_SPLICE	YES	1	2	0.91	0.83	0.0115	0.1039	DNM3->chr1:171810621-172387606:+,dynamin_3,PAPPA2->Oncogene{Bushman},chr1:176432307-176814735:+,pappalysin_2	SLR25_KIDNEY	0.83	0.91	0.1154	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	SFT2D2--DNM3	3	1	SFT2D2	1205	chr1:168195380:+	DNM3	33781	chr1:172037959:+	ONLY_REF_SPLICE	YES	60	2	0.06	0.67	0.0346	0.0115	SFT2D2->SFT2_domain_containing_2,chr1:168195176-168222263:+,DNM3->chr1:171810621-172387606:+,dynamin_3	SLR25_KIDNEY	0.06	0.67	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	DENND1A--RP11-470P21.2	3	0	DENND1A	13435	chr9:126371715:-	RP11-470P21.2	45413	chr9:72109203:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,RP11-470P21.2->chr9:72087382-72109429:+	SLR25_KIDNEY	1	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	HADHA--TMSB4X	3	0	HADHA	13481	chr2:26426970:-	TMSB4X	24242	chrX:12993243:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SLR25_KIDNEY	1	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	RP11-275N1.1--DNAJC1	3	0	RP11-275N1.1	1056	chr10:21661824:-	DNAJC1	18230	chr10:22095028:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	RP11-275N1.1->chr10:21629162-21661879:-,DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-	SLR25_KIDNEY	1	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	RP11-275N1.1--DNAJC1	1	6	RP11-275N1.1	2205	chr10:21658896:-	DNAJC1	18230	chr10:22095028:-	ONLY_REF_SPLICE	YES	11	174	0.39	0.04	0.0115	0.0692	RP11-275N1.1->chr10:21629162-21661879:-,DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-	SLR25_KIDNEY	0.04	0.39	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	POU2F1--ASTN1	2	1	POU2F1	1130	chr1:167190195:+	ASTN1	60078	chr1:176915256:-	ONLY_REF_SPLICE	YES	0	13	1	0.19	0.0231	0.0115	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ASTN1->astrotactin_1,chr1:176826438-177134109:-	SLR25_KIDNEY	0.19	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	ALDH9A1--RFWD2	2	0	ALDH9A1	1486	chr1:165667615:-	RFWD2	21431	chr1:176133027:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ALDH9A1->aldehyde_dehydrogenase_9_family_member_A1,chr1:165631453-165668100:-,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	SLR25_KIDNEY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	GLI2--CCDC93	2	0	GLI2	5103	chr2:121685042:+	CCDC93	38158	chr2:118710011:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GLI2->GLI_family_zinc_finger_2,Oncogene{Bushman},chr2:121493199-121750229:+,CCDC93->chr2:118673054-118771709:-,coiled-coil_domain_containing_93	SLR25_KIDNEY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	KRIT1--KIAA0930	2	0	KRIT1	15591	chr7:91843206:-	KIAA0930	29179	chr22:45607988:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,KIAA0930->KIAA0930,chr22:45586219-45636650:-	SLR25_KIDNEY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	NAB1--GLS	2	0	NAB1	7377	chr2:191524721:+	GLS	35040	chr2:191795163:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	NAB1->NGFI-A_binding_protein_1,chr2:191511472-191557492:+,GLS->chr2:191745553-191830278:+,glutaminase	SLR25_KIDNEY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	NT5C2--SCLT1	2	0	NT5C2	21180	chr10:104850693:-	SCLT1	34315	chr4:129960251:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	NT5C2->5'-nucleotidase,_cytosolic_II,chr10:104845940-104953056:-,SCLT1->chr4:129786076-130014764:-,sodium_channel_and_clathrin_linker_1	SLR25_KIDNEY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	POU2F1--ASTN1	1	3	POU2F1	5576	chr1:167288293:+	ASTN1	56031	chr1:176934373:-	ONLY_REF_SPLICE	YES	2	4	0.67	0.5	0.0115	0.0346	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ASTN1->astrotactin_1,chr1:176826438-177134109:-	SLR25_KIDNEY	0.5	0.67	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	SFT2D2--DNM3	1	3	SFT2D2	7016	chr1:168208398:+	DNM3	33781	chr1:172037959:+	ONLY_REF_SPLICE	YES	86	2	0.04	0.67	0.0115	0.0346	SFT2D2->SFT2_domain_containing_2,chr1:168195176-168222263:+,DNM3->chr1:171810621-172387606:+,dynamin_3	SLR25_KIDNEY	0.04	0.67	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	C6orf99--SYTL3	1	2	C6orf99	1372	chr6:159291342:+	SYTL3	16254	chr6:159128262:+	ONLY_REF_SPLICE	YES	14	6	0.18	0.33	0.0115	0.0231	C6orf99->chr6:159290971-159331385:+,chromosome_6_open_reading_frame_99,SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3	SLR25_KIDNEY	0.18	0.33	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	POU2F1--ASTN1	1	1	POU2F1	1130	chr1:167190195:+	ASTN1	58911	chr1:176918487:-	ONLY_REF_SPLICE	YES	0	15	1	0.12	0.0115	0.0115	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ASTN1->astrotactin_1,chr1:176826438-177134109:-	SLR25_KIDNEY	0.12	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	RP11-368L12.1--RP11-96H17.1	1	1	RP11-368L12.1	3549	chr16:63565129:-	RP11-96H17.1	11338	chr16:63124226:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0115	GTEx_FI:{Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4]},RP11-368L12.1->chr16:63348168-63651950:-,RP11-96H17.1->chr16:63090690-63163558:-	SLR25_KIDNEY	1	1	0.023	TRUE	1	0	0	1	0	TRUE	ACH-000300
HEP3B217_LIVER	PTPLAD1--IGF2	200	8	PTPLAD1	18266	chr15:65869815:+	IGF2	32899	chr11:2153078:-	INCL_NON_REF_SPLICE	YES	362	5300	0.36	0.04	2.4589	0.0984	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	0.04	0.36	2.5573	TRUE	0	0	0	4	0	TRUE	ACH-000625
HEP3B217_LIVER	IGF2BP2--TFEB	147	60	IGF2BP2	2393	chr3:185540941:-	TFEB	32957	chr6:41658973:-	ONLY_REF_SPLICE	YES	165	7	0.56	0.97	1.8073	0.7377	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB	HEP3B217_LIVER	0.56	0.97	2.545	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	NF2--HORMAD2	63	25	NF2	7986	chr22:30054253:+	HORMAD2	37873	chr22:30572052:+	ONLY_REF_SPLICE	YES	29	0	0.75	1	0.7745	0.3074	NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin),HORMAD2->HORMA_domain_containing_2,chr22:30476163-30573064:+	HEP3B217_LIVER	0.75	1	1.0819	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	LONP1--HCN2	40	19	LONP1	15543	chr19:5696065:-	HCN2	24242	chr19:603544:+	ONLY_REF_SPLICE	YES	340	1	0.15	0.98	0.4918	0.2336	LONP1->chr19:5691845-5720583:-,lon_peptidase_1,_mitochondrial,HCN2->chr19:589893-617159:+,hyperpolarization_activated_cyclic_nucleotide_gated_potassium_channel_2	HEP3B217_LIVER	0.15	0.98	0.7254	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	IGF2BP2--TFEB	13	45	IGF2BP2	1274	chr3:185542571:-	TFEB	32957	chr6:41658973:-	ONLY_REF_SPLICE	YES	166	7	0.26	0.89	0.1598	0.5532	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB	HEP3B217_LIVER	0.26	0.89	0.713	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	IGF2BP2--TFEB	2	60	IGF2BP2	2393	chr3:185540941:-	TFEB	31610	chr6:41673490:-	ONLY_REF_SPLICE	YES	165	7	0.27	0.9	0.0246	0.7377	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB	HEP3B217_LIVER	0.27	0.9	0.7623	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	IGF2BP2--TFEB	2	60	IGF2BP2	3513	chr3:185538800:-	TFEB	32957	chr6:41658973:-	ONLY_REF_SPLICE	YES	175	7	0.26	0.9	0.0246	0.7377	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB	HEP3B217_LIVER	0.26	0.9	0.7623	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	RAB7A--IGF2	5	0	RAB7A	7495	chr3:128532465:+	IGF2	22218	chr11:2153290:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0615	0	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	1	1	0.0615	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	RELN--PHF21A	4	1	RELN	56116	chr7:103151298:-	PHF21A	100507	chr11:45957290:-	ONLY_REF_SPLICE	YES	120	17	0.04	0.23	0.0492	0.0123	RELN->chr7:103112231-103629963:-,reelin,PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-	HEP3B217_LIVER	0.04	0.23	0.0615	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	WDR3--DPYD	4	0	WDR3	10612	chr1:118486249:+	DPYD	45414	chr1:98060722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0492	0	WDR3->WD_repeat_domain_3,chr1:118472343-118509165:+,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	HEP3B217_LIVER	1	1	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	RAB7A--IGF2	3	0	RAB7A	7495	chr3:128532465:+	IGF2	22511	chr11:2152997:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	RAB7A--IGF2	3	0	RAB7A	7475	chr3:128532445:+	IGF2	22417	chr11:2153091:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	SPATS2L--EEF1A1P5	3	0	SPATS2L	27062	chr2:201342484:+	EEF1A1P5	34584	chr9:135894835:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	SPATS2L->chr2:201170604-201346986:+,spermatogenesis_associated_serine_rich_2_like,EEF1A1P5->chr9:135894816-135896553:+,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_5	HEP3B217_LIVER	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	IL1RAP--CCDC50	2	0	IL1RAP	1169	chr3:190232008:+	CCDC50	34471	chr3:191074877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	IL1RAP->chr3:190231840-190375843:+,interleukin_1_receptor_accessory_protein,CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50	HEP3B217_LIVER	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	POLA1--ALB	1	1	POLA1	37730	chrX:24948666:+	ALB	44090	chr4:74270086:+	ONLY_REF_SPLICE	YES	19	8	0.1	0.2	0.0123	0.0123	POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit,ALB->albumin,chr4:74262831-74287129:+	HEP3B217_LIVER	0.1	0.2	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000625
SNU869_BILIARY_TRACT	ATXN1L--BAHD1	113	40	ATXN1L	1114	chr16:71880007:+	BAHD1	18840	chr15:40750650:+	ONLY_REF_SPLICE	YES	10	0	0.94	1	0.7398	0.2619	ATXN1L->ataxin_1_like,chr16:71879894-71919171:+,BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+	SNU869_BILIARY_TRACT	0.94	1	1.0017	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	SLC35D2--DPYSL4	96	7	SLC35D2	1234	chr9:99145759:-	DPYSL4	19929	chr10:134004251:+	ONLY_REF_SPLICE	YES	11	0	0.9	1	0.6285	0.0458	SLC35D2->chr9:99082988-99145992:-,solute_carrier_family_35_member_D2,DPYSL4->chr10:134000404-134019280:+,dihydropyrimidinase_like_4	SNU869_BILIARY_TRACT	0.9	1	0.6743	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	LPP--OR4G4P	67	8	LPP	12408	chr3:188202492:+	OR4G4P	54769	chr1:53282:+	INCL_NON_REF_SPLICE	YES	14	1	0.84	0.99	0.4386	0.0524	LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,OR4G4P->chr1:52473-54936:+,olfactory_receptor_family_4_subfamily_G_member_4_pseudogene	SNU869_BILIARY_TRACT	0.84	0.99	0.491	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	NF1--NUFIP2	46	0	NF1	63040	chr17:29686559:+	NUFIP2	87785	chr17:27586533:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3012	0	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2	SNU869_BILIARY_TRACT	1	1	0.3012	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	BAHD1--HERC2P7	21	0	BAHD1	2302	chr15:40733467:+	HERC2P7	15715	chr15:23390675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1375	0	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,HERC2P7->chr15:23388289-23392657:+,hect_domain_and_RLD_2_pseudogene_7	SNU869_BILIARY_TRACT	1	1	0.1375	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	BAHD1--HERC2P7	9	0	BAHD1	2302	chr15:40733467:+	HERC2P7	14514	chr15:23388289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0589	0	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,HERC2P7->chr15:23388289-23392657:+,hect_domain_and_RLD_2_pseudogene_7	SNU869_BILIARY_TRACT	1	1	0.0589	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	ABHD12--MACROD2-AS1	7	0	ABHD12	1471	chr20:25371149:-	MACROD2-AS1	25641	chr20:14865240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-,MACROD2-AS1->MACROD2_antisense_RNA_1,chr20:14864899-14910161:-	SNU869_BILIARY_TRACT	1	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	SLC35D2--DPYSL4	4	1	SLC35D2	1234	chr9:99145759:-	DPYSL4	21393	chr10:134006162:+	ONLY_REF_SPLICE	YES	11	4	0.31	0.56	0.0262	0.0065	SLC35D2->chr9:99082988-99145992:-,solute_carrier_family_35_member_D2,DPYSL4->chr10:134000404-134019280:+,dihydropyrimidinase_like_4	SNU869_BILIARY_TRACT	0.31	0.56	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	BAHD1--HERC2P7	3	0	BAHD1	2302	chr15:40733467:+	HERC2P7	15764	chr15:23390724:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,HERC2P7->chr15:23388289-23392657:+,hect_domain_and_RLD_2_pseudogene_7	SNU869_BILIARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	EGFR--APBB2	3	0	EGFR	1345	chr7:55087058:+	APBB2	63114	chr4:40895428:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	SNU869_BILIARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	CDK19--FBXL4	2	0	CDK19	1151	chr6:111137011:-	FBXL4	27113	chr6:99375698:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	CDK19->chr6:110931181-111137161:-,cyclin-dependent_kinase_19,FBXL4->F-box_and_leucine-rich_repeat_protein_4,chr6:99316420-99395849:-	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	CHD2--SRSF1	2	0	CHD2	6529	chr15:93444529:+	SRSF1	62155	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	1	2	0	9	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	CNN2--ONECUT3	2	0	CNN2	4331	chr19:1032695:+	ONECUT3	15042	chr19:1775152:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	CNN2->calponin_2,chr19:1026298-1039068:+,ONECUT3->chr19:1752372-1780987:+,one_cut_homeobox_3	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	CTA-714B7.5--FERMT3	2	0	CTA-714B7.5	4248	chr22:35567428:-	FERMT3	12859	chr11:63986723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	CTA-714B7.5->chr22:35515817-35627049:-,FERMT3->chr11:63974150-63991354:+,fermitin_family_member_3	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	DAZAP1--SUN1	2	0	DAZAP1	8642	chr19:1422395:+	SUN1	26017	chr7:872142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	EEF1A2--HSP90AA1	2	0	EEF1A2	2310	chr20:62128973:-	HSP90AA1	16944	chr14:102551335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	EEF1A2->Oncogene{Bushman},chr20:62119366-62130505:-,eukaryotic_translation_elongation_factor_1_alpha_2,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	EGFR--UBC	2	0	EGFR	1345	chr7:55087058:+	UBC	47998	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	ELOVL6--INTS12	2	0	ELOVL6	1953	chr4:111119403:-	INTS12	29506	chr4:106607995:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ELOVL6->ELOVL_fatty_acid_elongase_6,chr4:110967002-111120355:-,INTS12->chr4:106603784-106817143:-,integrator_complex_subunit_12	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	EXD3--ARRDC1	2	0	EXD3	1149	chr9:140317566:-	ARRDC1	36430	chr9:140507348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,ARRDC1->arrestin_domain_containing_1,chr9:140500106-140509812:+	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	HOXB3--HOXB9	2	0	HOXB3	1433	chr17:46681842:-	HOXB9	22377	chr17:46700497:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[16244],HOXB3->chr17:46626232-46682274:-,homeobox_B3,HOXB9->chr17:46698518-46703839:-,homeobox_B9	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	3	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	HSD17B11--ANXA4	2	0	HSD17B11	1526	chr4:88312013:-	ANXA4	24904	chr2:70033517:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	HSD17B11->chr4:88257762-88312538:-,hydroxysteroid_(17-beta)_dehydrogenase_11,ANXA4->annexin_A4,chr2:69871557-70053596:+	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	IFITM10--COL13A1	2	0	IFITM10	3764	chr11:1768897:-	COL13A1	56102	chr10:71716760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	IFITM10->chr11:1753640-1771821:-,interferon_induced_transmembrane_protein_10,COL13A1->chr10:71561644-71724031:+,collagen_type_XIII_alpha_1	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	KDM3B--KANSL1	2	0	KDM3B	22320	chr5:137761271:+	KANSL1	45942	chr17:44128070:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	KDM3B->chr5:137688285-137772717:+,lysine_demethylase_3B,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	LARP4--TBC1D30	2	0	LARP4	2426	chr12:50794811:+	TBC1D30	38805	chr12:65221615:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+,TBC1D30->TBC1_domain_family_member_30,chr12:65174589-65274812:+	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	MROH1--CNN2	2	0	MROH1	4066	chr8:145218751:+	CNN2	45869	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,CNN2->calponin_2,chr19:1026298-1039068:+	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	NME1--COPRS	2	0	NME1	1127	chr17:49231023:+	COPRS	13136	chr17:30180049:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	NME1->NME/NM23_nucleoside_diphosphate_kinase_1,chr17:49230897-49239789:+,COPRS->chr17:30178883-30186356:-,coordinator_of_PRMT5_and_differentiation_stimulator	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	PGPEP1--KRT8	2	0	PGPEP1	4420	chr19:18466821:+	KRT8	27622	chr12:53292683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	PGPEP1->chr19:18451397-18480760:+,pyroglutamyl-peptidase_I,KRT8->chr12:53290977-53343738:-,keratin_8	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	RNF128--MSANTD2	2	0	RNF128	1615	chrX:105937638:+	MSANTD2	17287	chr11:124644870:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	RNF128->chrX:105937024-106040223:+,ring_finger_protein_128,_E3_ubiquitin_protein_ligase,MSANTD2->Myb/SANT_DNA_binding_domain_containing_2,chr11:124636394-124670569:-	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	RP11-93L9.1--PPP1CB	2	0	RP11-93L9.1	3263	chr4:124582988:+	PPP1CB	19178	chr2:28974904:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	RP11-93L9.1->chr4:124571422-124851561:+,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	SERINC2--POLD2	2	0	SERINC2	3060	chr1:31886151:+	POLD2	20738	chr7:44157663:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	SERINC2->chr1:31882412-31907525:+,serine_incorporator_2,POLD2->chr7:44154286-44163957:-,polymerase_(DNA)_delta_2,_accessory_subunit	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	SH3KBP1--MAP7D2	2	0	SH3KBP1	13083	chrX:19688980:-	MAP7D2	36277	chrX:20082923:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-,MAP7D2->MAP7_domain_containing_2,chrX:20024831-20135035:-	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	TCF7L2--NAP1L1	2	0	TCF7L2	3427	chr10:114724383:+	NAP1L1	39165	chr12:76443030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	TES--MET	2	0	TES	7998	chr7:115892530:+	MET	37348	chr7:116435709:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	TICRR--HAUS6	2	0	TICRR	3039	chr15:90126196:+	HAUS6	50487	chr9:19056402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	TICRR->TOPBP1_interacting_checkpoint_and_replication_regulator,chr15:90118713-90174287:+,HAUS6->HAUS_augmin_like_complex_subunit_6,chr9:19053141-19103117:-	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	ZBTB20--HIST1H2BK	2	0	ZBTB20	36998	chr3:114099064:-	HIST1H2BK	46369	chr6:27106460:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,HIST1H2BK->chr6:27106073-27114619:-,histone_cluster_1,_H2bk	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	ATXN1L--BAHD1	1	1	ATXN1L	1114	chr16:71880007:+	BAHD1	22669	chr15:40756060:+	ONLY_REF_SPLICE	YES	10	23	0.17	0.08	0.0065	0.0065	ATXN1L->ataxin_1_like,chr16:71879894-71919171:+,BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+	SNU869_BILIARY_TRACT	0.08	0.17	0.013	TRUE	0	0	0	1	0	TRUE	ACH-000182
BT474_BREAST	THRA--AC090627.1	746	609	THRA	11793	chr17:38243106:+	AC090627.1	21568	chr17:46371709:+	ONLY_REF_SPLICE	YES	60	0	0.96	1	9.319	7.6076	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,AC090627.1->chr17:46371709-46386124:+	BT474_BREAST	0.96	1	16.9266	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	RPS6KB1--SNF8	487	244	RPS6KB1	1240	chr17:57970686:+	SNF8	26089	chr17:47021337:-	ONLY_REF_SPLICE	YES	203	761	0.78	0.49	6.0836	3.048	{Klijn_CCL:Breast=1},RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	BT474_BREAST	0.49	0.78	9.1316	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ACACA--STAC2	401	137	ACACA	66695	chr17:35479453:-	STAC2	81161	chr17:37374426:-	ONLY_REF_SPLICE	YES	354	0	0.6	1	5.0093	1.7114	{Klijn_CCL:Breast=1},ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,STAC2->SH3_and_cysteine_rich_domain_2,chr17:37366789-37382125:-	BT474_BREAST	0.6	1	6.7207	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ZMYND8--CEP250	290	314	ZMYND8	29057	chr20:45852970:-	CEP250	56963	chr20:34078463:+	ONLY_REF_SPLICE	YES	211	10	0.74	0.98	3.6227	3.9225	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,CEP250->centrosomal_protein_250,chr20:34042985-34099804:+	BT474_BREAST	0.74	0.98	7.5452	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	THRA--AC090627.1	278	209	THRA	11793	chr17:38243106:+	AC090627.1	23800	chr17:46384693:+	ONLY_REF_SPLICE	YES	60	187	0.89	0.72	3.4728	2.6108	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,AC090627.1->chr17:46371709-46386124:+	BT474_BREAST	0.72	0.89	6.0836	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	TOB1--SYNRG	279	28	TOB1	2782	chr17:48943419:-	SYNRG	37847	chr17:35880751:-	ONLY_REF_SPLICE	YES	14	207	0.96	0.6	3.4852	0.3498	TOB1->chr17:48939584-48945339:-,transducer_of_ERBB2,_1,SYNRG->chr17:35874900-35969544:-,synergin,_gamma	BT474_BREAST	0.6	0.96	3.835	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	STX16--RAE1	153	141	STX16	3048	chr20:57234690:+	RAE1	18335	chr20:55929088:+	ONLY_REF_SPLICE	YES	484	1493	0.38	0.16	1.9113	1.7614	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},STX16->chr20:57226328-57254582:+,syntaxin_16,RAE1->chr20:55926066-55954267:+,ribonucleic_acid_export_1	BT474_BREAST	0.16	0.38	3.6727	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	AHCTF1--NAAA	132	67	AHCTF1	1401	chr1:247094880:-	NAAA	50972	chr4:76846964:-	ONLY_REF_SPLICE	YES	27	116	0.88	0.63	1.6489	0.837	AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,NAAA->N-acylethanolamine_acid_amidase,chr4:76831809-76862204:-	BT474_BREAST	0.63	0.88	2.4859	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	STX16--RAE1	97	108	STX16	1816	chr20:57227143:+	RAE1	18335	chr20:55929088:+	ONLY_REF_SPLICE	YES	418	1493	0.33	0.12	1.2117	1.3491	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},STX16->chr20:57226328-57254582:+,syntaxin_16,RAE1->chr20:55926066-55954267:+,ribonucleic_acid_export_1	BT474_BREAST	0.12	0.33	2.5608	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	STARD3--DOK5	115	20	STARD3	1167	chr17:37793484:+	DOK5	23084	chr20:53259997:+	ONLY_REF_SPLICE	YES	298	0	0.31	1	1.4366	0.2498	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,DOK5->chr20:53092136-53267710:+,docking_protein_5	BT474_BREAST	0.31	1	1.6864	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MED1--ACSF2	105	38	MED1	6915	chr17:37595418:-	ACSF2	36449	chr17:48548389:+	ONLY_REF_SPLICE	YES	414	377	0.26	0.28	1.3117	0.4747	MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,ACSF2->acyl-CoA_synthetase_family_member_2,chr17:48503519-48552206:+	BT474_BREAST	0.26	0.28	1.7864	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MED1--STXBP4	99	45	MED1	1249	chr17:37607291:-	STXBP4	44835	chr17:53218671:+	ONLY_REF_SPLICE	YES	662	26	0.18	0.85	1.2367	0.5621	{Klijn_CCL:Breast=1},MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,STXBP4->chr17:53046088-53241646:+,syntaxin_binding_protein_4	BT474_BREAST	0.18	0.85	1.7988	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	RAB22A--MYO9B	96	28	RAB22A	2397	chr20:56886178:+	MYO9B	23218	chr19:17256207:+	ONLY_REF_SPLICE	YES	269	25	0.32	0.83	1.1992	0.3498	RAB22A->RAB22A,_member_RAS_oncogene_family,chr20:56884752-56942563:+,MYO9B->chr19:17186591-17325346:+,myosin_IXB	BT474_BREAST	0.32	0.83	1.549	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	TRPC4AP--MRPL45	65	91	TRPC4AP	2387	chr20:33665849:-	MRPL45	31832	chr17:36478009:+	ONLY_REF_SPLICE	YES	547	1685	0.22	0.08	0.812	1.1368	{Klijn_CCL:Breast=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	BT474_BREAST	0.08	0.22	1.9488	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	GLB1--CMTM7	76	35	GLB1	23601	chr3:33055548:-	CMTM7	29734	chr3:32483332:+	ONLY_REF_SPLICE	YES	29	0	0.79	1	0.9494	0.4372	{Klijn_CCL:Breast=1},GLB1->Oncogene{Bushman},chr3:33038100-33138722:-,galactosidase_beta_1,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	BT474_BREAST	0.79	1	1.3866	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ZMYND8--CEP250	44	100	ZMYND8	29057	chr20:45852970:-	CEP250	57538	chr20:34079038:+	ONLY_REF_SPLICE	YES	211	91	0.41	0.61	0.5496	1.2492	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,CEP250->centrosomal_protein_250,chr20:34042985-34099804:+	BT474_BREAST	0.41	0.61	1.7988	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	VAPB--IKZF3	57	38	VAPB	1396	chr20:56964573:+	IKZF3	28254	chr17:37934020:-	ONLY_REF_SPLICE	YES	659	4	0.13	0.96	0.712	0.4747	{Klijn_CCL:Breast=1},VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	BT474_BREAST	0.13	0.96	1.1867	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	RPS6KB1--SNF8	3	246	RPS6KB1	1839	chr17:57971285:+	SNF8	26089	chr17:47021337:-	ONLY_REF_SPLICE	YES	225	761	0.53	0.25	0.0375	3.073	{Klijn_CCL:Breast=1},RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	BT474_BREAST	0.25	0.53	3.1105	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	THRA--AC090627.1	3	209	THRA	11792	chr17:38243105:+	AC090627.1	23792	chr17:46384685:+	INCL_NON_REF_SPLICE	YES	60	202	0.78	0.51	0.0375	2.6108	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,AC090627.1->chr17:46371709-46386124:+	BT474_BREAST	0.51	0.78	2.6483	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	TRPC4AP--MRPL45	27	112	TRPC4AP	2387	chr20:33665849:-	MRPL45	30682	chr17:36476502:+	ONLY_REF_SPLICE	YES	547	1435	0.2	0.09	0.3373	1.3991	{Klijn_CCL:Breast=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	BT474_BREAST	0.09	0.2	1.7364	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	FAM102A--CIZ1	45	22	FAM102A	1522	chr9:130742271:-	CIZ1	22128	chr9:130948055:-	ONLY_REF_SPLICE	YES	208	248	0.24	0.21	0.5621	0.2748	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-	BT474_BREAST	0.21	0.24	0.8369	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	TRPC4AP--MRPL45	19	115	TRPC4AP	2387	chr20:33665849:-	MRPL45	29633	chr17:36474586:+	ONLY_REF_SPLICE	YES	547	1411	0.2	0.09	0.2373	1.4366	{Klijn_CCL:Breast=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	BT474_BREAST	0.09	0.2	1.6739	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MED13--BCAS3	38	21	MED13	3547	chr17:60129898:-	BCAS3	91502	chr17:59465979:+	ONLY_REF_SPLICE	YES	32	54	0.65	0.52	0.4747	0.2623	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	BT474_BREAST	0.52	0.65	0.737	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	STX16--RAE1	10	122	STX16	1867	chr20:57227194:+	RAE1	18335	chr20:55929088:+	ONLY_REF_SPLICE	YES	488	1493	0.21	0.08	0.1249	1.524	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},STX16->chr20:57226328-57254582:+,syntaxin_16,RAE1->chr20:55926066-55954267:+,ribonucleic_acid_export_1	BT474_BREAST	0.08	0.21	1.6489	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	RPS6KB1--SNF8	1	152	RPS6KB1	1240	chr17:57970686:+	SNF8	27140	chr17:47018424:-	ONLY_REF_SPLICE	YES	203	804	0.43	0.16	0.0125	1.8988	{Klijn_CCL:Breast=1},RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	BT474_BREAST	0.16	0.43	1.9113	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	PPP1R12A--MGAT4C	34	19	PPP1R12A	1766	chr12:80328475:-	MGAT4C	44472	chr12:86829042:-	ONLY_REF_SPLICE	YES	87	0	0.38	1	0.4247	0.2373	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,MGAT4C->MGAT4_family_member_C,chr12:86372516-87232681:-	BT474_BREAST	0.38	1	0.662	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	VAPB--IKZF3	33	19	VAPB	1396	chr20:56964573:+	IKZF3	29371	chr17:37922746:-	ONLY_REF_SPLICE	YES	659	14	0.07	0.79	0.4122	0.2373	{Klijn_CCL:Breast=1},VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	BT474_BREAST	0.07	0.79	0.6495	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ASTN2--RP11-281A20.1	32	19	ASTN2	2762	chr9:120053605:-	RP11-281A20.1	38824	chr9:120632505:-	ONLY_REF_SPLICE	YES	13	0	0.8	1	0.3997	0.2373	ASTN2->Oncogene{Bushman},astrotactin_2,chr9:119187504-120177348:-,RP11-281A20.1->chr9:120602600-120659534:-	BT474_BREAST	0.8	1	0.637	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	SKA2--MYO19	34	4	SKA2	1139	chr17:57232492:-	MYO19	29671	chr17:34863351:-	ONLY_REF_SPLICE	YES	33	212	0.54	0.15	0.4247	0.05	{Klijn_CCL:Breast=1},SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2,MYO19->chr17:34851477-34899284:-,myosin_XIX	BT474_BREAST	0.15	0.54	0.4747	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	PIP4K2B--RAD51C	25	18	PIP4K2B	9121	chr17:36933940:-	RAD51C	31035	chr17:56809845:+	ONLY_REF_SPLICE	YES	602	210	0.07	0.17	0.3123	0.2249	PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+	BT474_BREAST	0.07	0.17	0.5372	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	USP32--MED1	26	10	USP32	4918	chr17:58422842:-	MED1	47257	chr17:37604157:-	ONLY_REF_SPLICE	YES	121	711	0.23	0.05	0.3248	0.1249	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1	BT474_BREAST	0.05	0.23	0.4497	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	FITM2--UQCC1	19	21	FITM2	1194	chr20:42939616:-	UQCC1	25551	chr20:33902568:-	ONLY_REF_SPLICE	YES	95	230	0.3	0.15	0.2373	0.2623	FITM2->chr20:42931478-42939809:-,fat_storage_inducing_transmembrane_protein_2,UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1	BT474_BREAST	0.15	0.3	0.4996	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	PIP4K2B--RAD51C	19	19	PIP4K2B	9121	chr17:36933940:-	RAD51C	29822	chr17:56801401:+	ONLY_REF_SPLICE	YES	602	240	0.06	0.14	0.2373	0.2373	PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+	BT474_BREAST	0.06	0.14	0.4746	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	AHCTF1--NAAA	5	74	AHCTF1	1850	chr1:247094431:-	NAAA	50972	chr4:76846964:-	ONLY_REF_SPLICE	YES	42	116	0.65	0.41	0.0625	0.9244	AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,NAAA->N-acylethanolamine_acid_amidase,chr4:76831809-76862204:-	BT474_BREAST	0.41	0.65	0.9869	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MEF2D--OR10J1	18	18	MEF2D	8161	chr1:156449082:-	OR10J1	20349	chr1:159409566:+	INCL_NON_REF_SPLICE	YES	36	0	0.5	1	0.2249	0.2249	MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,OR10J1->chr1:159409512-159410600:+,olfactory_receptor_family_10_subfamily_J_member_1	BT474_BREAST	0.5	1	0.4498	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	VAPB--IKZF3	12	41	VAPB	1396	chr20:56964573:+	IKZF3	26679	chr17:37944627:-	ONLY_REF_SPLICE	YES	659	3	0.07	0.95	0.1499	0.5122	{Klijn_CCL:Breast=1},VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	BT474_BREAST	0.07	0.95	0.6621	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	DIDO1--TTI1	21	3	DIDO1	1157	chr20:61569148:-	TTI1	34646	chr20:36634799:-	ONLY_REF_SPLICE	YES	9	72	0.73	0.25	0.2623	0.0375	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-	BT474_BREAST	0.25	0.73	0.2998	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	SKA2--MYO19	19	5	SKA2	1139	chr17:57232492:-	MYO19	29259	chr17:34863763:-	ONLY_REF_SPLICE	YES	33	288	0.42	0.08	0.2373	0.0625	{Klijn_CCL:Breast=1},SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2,MYO19->chr17:34851477-34899284:-,myosin_XIX	BT474_BREAST	0.08	0.42	0.2998	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	DIDO1--TTI1	19	4	DIDO1	1157	chr20:61569148:-	TTI1	31303	chr20:36642259:-	ONLY_REF_SPLICE	YES	9	4	0.72	0.85	0.2373	0.05	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-	BT474_BREAST	0.72	0.85	0.2873	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	TPM4--SYCE2	16	15	TPM4	10590	chr19:16199930:+	SYCE2	23976	chr19:13015480:-	ONLY_REF_SPLICE	YES	397	8	0.07	0.79	0.1999	0.1874	TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,SYCE2->chr19:13009600-13030090:-,synaptonemal_complex_central_element_protein_2	BT474_BREAST	0.07	0.79	0.3873	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	AHCTF1--NAAA	10	30	AHCTF1	1401	chr1:247094880:-	NAAA	52049	chr4:76842276:-	ONLY_REF_SPLICE	YES	27	141	0.6	0.22	0.1249	0.3748	AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,NAAA->N-acylethanolamine_acid_amidase,chr4:76831809-76862204:-	BT474_BREAST	0.22	0.6	0.4997	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	SKA2--MYO19	13	16	SKA2	1314	chr17:57232317:-	MYO19	29671	chr17:34863351:-	ONLY_REF_SPLICE	YES	272	212	0.1	0.12	0.1624	0.1999	{Klijn_CCL:Breast=1},SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2,MYO19->chr17:34851477-34899284:-,myosin_XIX	BT474_BREAST	0.1	0.12	0.3623	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	CPNE1--PI3	12	16	CPNE1	3826	chr20:34243124:-	PI3	14948	chr20:43804502:+	ONLY_REF_SPLICE	YES	72	1	0.28	0.97	0.1499	0.1999	CPNE1->chr20:34213953-34252878:-,copine_1,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	BT474_BREAST	0.28	0.97	0.3498	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	BRD4--RFX1	15	0	BRD4	1256	chr19:15443101:-	RFX1	33748	chr19:14104707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1874	0	BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	BT474_BREAST	1	1	0.1874	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	FAM102A--CIZ1	9	23	FAM102A	1522	chr9:130742271:-	CIZ1	21056	chr9:130950213:-	ONLY_REF_SPLICE	YES	208	218	0.13	0.13	0.1124	0.2873	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-	BT474_BREAST	0.13	0.13	0.3997	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	LAMP1--MCF2L	13	1	LAMP1	1255	chr13:113951810:+	MCF2L	46545	chr13:113718618:+	ONLY_REF_SPLICE	YES	11	84	0.56	0.14	0.1624	0.0125	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+	BT474_BREAST	0.14	0.56	0.1749	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MED13--BCAS3	10	11	MED13	3547	chr17:60129898:-	BCAS3	94861	chr17:59469338:+	ONLY_REF_SPLICE	YES	32	62	0.4	0.25	0.1249	0.1374	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	BT474_BREAST	0.25	0.4	0.2623	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	NCOA2--ZNF704	12	3	NCOA2	1106	chr8:71315935:-	ZNF704	38754	chr8:81733850:-	ONLY_REF_SPLICE	YES	4	14	0.79	0.52	0.1499	0.0375	NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704	BT474_BREAST	0.52	0.79	0.1874	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ZFP64--PHACTR3	10	11	ZFP64	8337	chr20:50776662:-	PHACTR3	32066	chr20:58318162:+	ONLY_REF_SPLICE	YES	86	0	0.2	1	0.1249	0.1374	ZFP64->Oncogene{Bushman},ZFP64_zinc_finger_protein,chr20:50668202-50820847:-,PHACTR3->chr20:58152564-58422766:+,phosphatase_and_actin_regulator_3	BT474_BREAST	0.2	1	0.2623	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	FCHSD2--LRTOMT	8	6	FCHSD2	10623	chr11:72695133:-	LRTOMT	31134	chr11:71799343:+	ONLY_REF_SPLICE	YES	19	8	0.42	0.64	0.0999	0.075	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,LRTOMT->chr11:71791382-71821828:+,leucine_rich_transmembrane_and_O-methyltransferase_domain_containing	BT474_BREAST	0.42	0.64	0.1749	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	RPRD1B--GID8	8	0	RPRD1B	8294	chr20:36694658:+	GID8	18950	chr20:61572843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0999	0	RPRD1B->chr20:36661948-36720768:+,regulation_of_nuclear_pre-mRNA_domain_containing_1B,GID8->GID_complex_subunit_8_homolog,chr20:61569471-61576996:+	BT474_BREAST	1	1	0.0999	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ACSF2--DHX40P1	7	0	ACSF2	11249	chr17:48548496:+	DHX40P1	23755	chr17:58066705:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0874	0	ACSF2->acyl-CoA_synthetase_family_member_2,chr17:48503519-48552206:+,DHX40P1->DEAH-box_helicase_40_pseudogene_1,chr17:58053370-58079745:-	BT474_BREAST	1	1	0.0874	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ERBB2--RPL8	7	0	ERBB2	20479	chr17:37879629:+	RPL8	30885	chr8:146017257:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0874	0	GTEx&tcga_normals:1/3694=0.03%,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,RPL8->chr8:146015150-146017972:-,ribosomal_protein_L8	BT474_BREAST	1	1	0.0874	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	CPNE1--PI3	2	19	CPNE1	4976	chr20:34241450:-	PI3	14948	chr20:43804502:+	ONLY_REF_SPLICE	YES	76	1	0.22	0.95	0.025	0.2373	CPNE1->chr20:34213953-34252878:-,copine_1,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	BT474_BREAST	0.22	0.95	0.2623	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	PPP1R9A--WDR66	6	2	PPP1R9A	9499	chr7:94827796:+	WDR66	57608	chr12:122404861:+	ONLY_REF_SPLICE	YES	17	1	0.32	0.89	0.075	0.025	PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A,WDR66->WD_repeat_domain_66,chr12:122355768-122441833:+	BT474_BREAST	0.32	0.89	0.1	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	BRD4--RFX1	6	0	BRD4	1256	chr19:15443101:-	RFX1	35119	chr19:14094407:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.075	0	BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	BT474_BREAST	1	1	0.075	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	CTD-2319I12.2--HEATR6	4	7	CTD-2319I12.2	1164	chr17:58156833:+	HEATR6	17130	chr17:58136882:-	ONLY_REF_SPLICE	YES	0	90	1	0.11	0.05	0.0874	LOCAL_INVERSION:+:-:[378],CTD-2319I12.2->chr17:58156670-58166056:+,HEATR6->HEAT_repeat_containing_6,chr17:58120555-58156292:-	BT474_BREAST	0.11	1	0.1374	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	CPNE1--PI3	4	6	CPNE1	2683	chr20:34246852:-	PI3	14948	chr20:43804502:+	ONLY_REF_SPLICE	YES	129	1	0.07	0.91	0.05	0.075	CPNE1->chr20:34213953-34252878:-,copine_1,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	BT474_BREAST	0.07	0.91	0.125	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	GABRB3--RYR3	4	2	GABRB3	26941	chr15:26790011:-	RYR3	53918	chr15:33920672:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0.025	GABRB3->chr15:26788693-27184686:-,gamma-aminobutyric_acid_type_A_receptor_beta3_subunit,RYR3->chr15:33603163-34158303:+,ryanodine_receptor_3	BT474_BREAST	1	1	0.075	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	KAT6A--PLAT	3	6	KAT6A	3420	chr8:41905896:-	PLAT	45584	chr8:42038203:-	ONLY_REF_SPLICE	YES	35	2	0.2	0.82	0.0375	0.075	KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	BT474_BREAST	0.2	0.82	0.1125	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	BRD4--RFX1	4	1	BRD4	1710	chr19:15442647:-	RFX1	32548	chr19:14109129:-	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.05	0.0125	BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	BT474_BREAST	0.83	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	DYNLRB1--PPIA	4	0	DYNLRB1	5939	chr20:33122456:+	PPIA	11303	chr7:44836329:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	DYNLRB1->chr20:33104214-33128762:+,dynein_light_chain_roadblock-type_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	BT474_BREAST	1	1	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MEF2D--RP11-180D21.3	3	1	MEF2D	8161	chr1:156449082:-	RP11-180D21.3	21598	chr1:159437870:+	ONLY_REF_SPLICE	YES	36	0	0.1	1	0.0375	0.0125	MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,RP11-180D21.3->chr1:159436111-159453166:+	BT474_BREAST	0.1	1	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	RP11-245P10.4--ASH1L	2	1	RP11-245P10.4	1098	chr1:228595179:+	ASH1L	7912	chr1:155491409:-	ONLY_REF_SPLICE	YES	0	22	1	0.12	0.025	0.0125	RP11-245P10.4->chr1:228595082-228597395:+,ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-	BT474_BREAST	0.12	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	AATF--UBE3C	2	0	AATF	4553	chr17:35311207:+	UBE3C	39554	chr7:157015948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+,UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	CAPZA2--SRP9	2	0	CAPZA2	3371	chr7:116502704:+	SRP9	25493	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	BT474_BREAST	1	1	0.025	TRUE	0	0	0	9	0	TRUE	ACH-000927
BT474_BREAST	CPNE1--PI3	2	0	CPNE1	1155	chr20:34252724:-	PI3	14948	chr20:43804502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CPNE1->chr20:34213953-34252878:-,copine_1,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	FBXO46--WDR26	2	0	FBXO46	1056	chr19:46234107:-	WDR26	22911	chr1:224599267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	FBXO46->F-box_protein_46,chr19:46213887-46234162:-,WDR26->WD_repeat_domain_26,chr1:224572845-224624735:-	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	FCHSD2--LRTOMT	1	4	FCHSD2	10623	chr11:72695133:-	LRTOMT	31177	chr11:71799386:+	ONLY_REF_SPLICE	YES	19	11	0.21	0.31	0.0125	0.05	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,LRTOMT->chr11:71791382-71821828:+,leucine_rich_transmembrane_and_O-methyltransferase_domain_containing	BT474_BREAST	0.21	0.31	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ITFG1--VPS35	2	0	ITFG1	3708	chr16:47493014:-	VPS35	36100	chr16:46717518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1,VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MED24--FKBP4	2	0	MED24	9031	chr17:38188902:-	FKBP4	25966	chr12:2906304:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	MED24->chr17:38175350-38217468:-,mediator_complex_subunit_24,FKBP4->FK506_binding_protein_4,chr12:2904119-2914576:+	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MEF2D--RP11-180D21.3	2	0	MEF2D	8161	chr1:156449082:-	RP11-180D21.3	22675	chr1:159452694:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,RP11-180D21.3->chr1:159436111-159453166:+	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	TMSB10--TMSB4X	2	0	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	BT474_BREAST	1	1	0.025	TRUE	0	1	0	17	1	TRUE	ACH-000927
BT474_BREAST	DNAH14--CNIH3	1	2	DNAH14	22917	chr1:225231685:+	CNIH3	130415	chr1:224918164:+	ONLY_REF_SPLICE	YES	5	3	0.38	0.5	0.0125	0.025	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,CNIH3->chr1:224622362-224928251:+,cornichon_family_AMPA_receptor_auxiliary_protein_3	BT474_BREAST	0.38	0.5	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	BRD4--RFX1	1	1	BRD4	1256	chr19:15443101:-	RFX1	32548	chr19:14109129:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0125	0.0125	BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	BT474_BREAST	0.67	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	DNAH14--CNIH3	1	1	DNAH14	18899	chr1:225211567:+	CNIH3	130415	chr1:224918164:+	ONLY_REF_SPLICE	YES	10	3	0.17	0.4	0.0125	0.0125	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,CNIH3->chr1:224622362-224928251:+,cornichon_family_AMPA_receptor_auxiliary_protein_3	BT474_BREAST	0.17	0.4	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ERN1--RP11-51L5.3	1	1	ERN1	4189	chr17:62175481:-	RP11-51L5.3	33975	chr17:60320487:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0125	0.0125	ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,RP11-51L5.3->chr17:60308831-60324514:-	BT474_BREAST	0.2	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ERN1--RP11-51L5.3	1	1	ERN1	4189	chr17:62175481:-	RP11-51L5.3	32827	chr17:60324514:-	ONLY_REF_SPLICE	NO	8	0	0.2	1	0.0125	0.0125	ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,RP11-51L5.3->chr17:60308831-60324514:-	BT474_BREAST	0.2	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	RP11-112H10.4--BCAS3	1	1	RP11-112H10.4	4634	chr17:56622032:+	BCAS3	15151	chr17:58786580:+	ONLY_REF_SPLICE	YES	0	27	1	0.07	0.0125	0.0125	RP11-112H10.4->chr17:56597198-56634338:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	BT474_BREAST	0.07	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	RP11-84G21.1--PTPRQ	1	1	RP11-84G21.1	1758	chr12:80329438:+	PTPRQ	46148	chr12:80981908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0125	0.0125	RP11-84G21.1->chr12:80328681-80334448:+,PTPRQ->chr12:80799774-81072802:+,protein_tyrosine_phosphatase,_receptor_type_Q	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
UMUC3_URINARY_TRACT	BAZ2A--MMP19	45	13	BAZ2A	3376	chr12:57023909:-	MMP19	27205	chr12:56236222:-	ONLY_REF_SPLICE	YES	37	0	0.61	1	0.4563	0.1318	BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,MMP19->chr12:56229217-56236750:-,matrix_metallopeptidase_19	UMUC3_URINARY_TRACT	0.61	1	0.5881	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	KCMF1--AP000459.4	45	8	KCMF1	1375	chr2:85198590:+	AP000459.4	20639	chr21:24745406:-	ONLY_REF_SPLICE	YES	46	0	0.54	1	0.4563	0.0811	KCMF1->Oncogene{Bushman},chr2:85198216-85286595:+,potassium_channel_modulatory_factor_1,AP000459.4->chr21:24733426-24757182:-	UMUC3_URINARY_TRACT	0.54	1	0.5374	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	BAZ2A--MMP19	20	4	BAZ2A	2725	chr12:57024560:-	MMP19	27205	chr12:56236222:-	ONLY_REF_SPLICE	YES	12	0	0.67	1	0.2028	0.0406	BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,MMP19->chr12:56229217-56236750:-,matrix_metallopeptidase_19	UMUC3_URINARY_TRACT	0.67	1	0.2434	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	UBTD2--CTB-43E15.1	17	4	UBTD2	1476	chr5:171710600:-	CTB-43E15.1	10441	chr5:173084843:+	ONLY_REF_SPLICE	YES	15	0	0.58	1	0.1724	0.0406	UBTD2->chr5:171636644-171711075:-,ubiquitin_domain_containing_2,CTB-43E15.1->chr5:173069522-173085197:+	UMUC3_URINARY_TRACT	0.58	1	0.213	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	MAML1--COL23A1	14	1	MAML1	1578	chr5:179160428:+	COL23A1	23226	chr5:177987749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1419	0.0101	{Klijn_CCL:Urinary_Bladder=1},MAML1->chr5:179159851-179223512:+,mastermind_like_transcriptional_coactivator_1,COL23A1->chr5:177664619-178017556:-,collagen_type_XXIII_alpha_1	UMUC3_URINARY_TRACT	1	1	0.152	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	PC--TSPAN18	4	5	PC	16877	chr11:66619261:-	TSPAN18	25258	chr11:44785976:+	ONLY_REF_SPLICE	YES	31	0	0.23	1	0.0406	0.0507	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,TSPAN18->chr11:44748015-44953972:+,tetraspanin_18	UMUC3_URINARY_TRACT	0.23	1	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	HSD17B12--KIAA1549L	4	4	HSD17B12	20103	chr11:43837941:+	KIAA1549L	55267	chr11:33677558:+	ONLY_REF_SPLICE	YES	95	26	0.08	0.24	0.0406	0.0406	HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12,KIAA1549L->KIAA1549-like,chr11:33563618-33695648:+	UMUC3_URINARY_TRACT	0.08	0.24	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	PC--TSPAN18	3	5	PC	16228	chr11:66619910:-	TSPAN18	25258	chr11:44785976:+	ONLY_REF_SPLICE	YES	56	0	0.12	1	0.0304	0.0507	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,TSPAN18->chr11:44748015-44953972:+,tetraspanin_18	UMUC3_URINARY_TRACT	0.12	1	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	BAZ2A--MMP19	3	4	BAZ2A	1635	chr12:57029966:-	MMP19	27205	chr12:56236222:-	ONLY_REF_SPLICE	YES	9	0	0.44	1	0.0304	0.0406	BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,MMP19->chr12:56229217-56236750:-,matrix_metallopeptidase_19	UMUC3_URINARY_TRACT	0.44	1	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	TXNRD1--TBK1	3	0	TXNRD1	10019	chr12:104680887:+	TBK1	47360	chr12:64882267:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+	UMUC3_URINARY_TRACT	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	WDR33--RASA3	3	0	WDR33	7687	chr2:128520636:-	RASA3	38299	chr13:114806570:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	UMUC3_URINARY_TRACT	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	ARRB1--PICALM	2	0	ARRB1	1242	chr11:75062632:-	PICALM	29095	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	ATP5C1--VWA8	2	0	ATP5C1	1135	chr10:7830226:+	VWA8	33306	chr13:42335340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+,VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	CEP112--FADD	2	0	CEP112	6307	chr17:64171162:-	FADD	46457	chr11:70052239:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,FADD->Fas_associated_via_death_domain,chr11:70049269-70053496:+	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	COMMD10--MNAT1	2	0	COMMD10	6085	chr5:115469875:+	MNAT1	27531	chr14:61346432:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+,MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	EIF1AX--PTTG1	2	0	EIF1AX	1220	chrX:20159743:-	PTTG1	14908	chr5:159849309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	EIF1AX->Oncogene{Bushman},chrX:20142636-20159962:-,eukaryotic_translation_initiation_factor_1A,_X-linked,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	EIF4G2--CTR9	2	0	EIF4G2	4204	chr11:10827454:-	CTR9	34226	chr11:10796754:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_INVERSION:-:+:[17307],EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2,CTR9->CTR9_homolog,_Paf1/RNA_polymerase_II_complex_component,chr11:10772534-10801290:+	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	GLUD1P3--SRPK1	2	0	GLUD1P3	1312	chr10:75490631:+	SRPK1	15012	chr6:35854588:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GLUD1P3->chr10:75490320-75497069:+,glutamate_dehydrogenase_1_pseudogene_3,SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	KTN1-AS1--IVNS1ABP	2	0	KTN1-AS1	2307	chr14:56045324:-	IVNS1ABP	19069	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	KTN1-AS1->KTN1_antisense_RNA_1,chr14:55965996-56046828:-,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	MTERFD2--FARP2	2	0	MTERFD2	1080	chr2:242041668:-	FARP2	27127	chr2:242343243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	MTERFD2->chr2:242011584-242041747:-,FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	MTRF1--KIF4A	2	0	MTRF1	1122	chr13:41837621:-	KIF4A	39844	chrX:69624565:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	MTRF1->chr13:41790505-41837742:-,mitochondrial_translational_release_factor_1,KIF4A->chrX:69509879-69640682:+,kinesin_family_member_4A	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	NANOS3--SAMD1	2	0	NANOS3	1132	chr19:13973008:+	SAMD1	9663	chr19:14200174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NANOS3->chr19:13972877-13991571:+,nanos_homolog_3_(Drosophila),SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	1	0	1	1	TRUE	ACH-000522
UMUC3_URINARY_TRACT	PDLIM5--CHMP1A	2	0	PDLIM5	29642	chr4:95585186:+	CHMP1A	41611	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	POM121C--TBCD	2	0	POM121C	4024	chr7:75103970:-	TBCD	25423	chr17:80721841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	POM121C->POM121_transmembrane_nucleoporin_C,chr7:75046066-75115548:-,TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	POMK--PAK2	2	0	POMK	4467	chr8:42958973:+	PAK2	21762	chr3:196544928:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	RP11-3L8.3--PDHX	2	0	RP11-3L8.3	2199	chr9:12790619:-	PDHX	16931	chr11:34999671:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RP11-3L8.3->chr9:12700100-12814344:-,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	ZDHHC13--UBXN4	2	0	ZDHHC13	1841	chr11:19139486:+	UBXN4	29107	chr2:136505837:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ZDHHC13->chr11:19138646-19197969:+,zinc_finger_DHHC-type_containing_13,UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	ZNF346--LINC00339	2	0	ZNF346	1218	chr5:176449914:+	LINC00339	18903	chr1:22356773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346,LINC00339->chr1:22351681-22357716:+,long_intergenic_non-protein_coding_RNA_339	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	TRIM52-AS1--NELL2	1	2	TRIM52-AS1	2312	chr5:180690767:+	NELL2	21403	chr12:45108524:-	ONLY_REF_SPLICE	YES	56	0	0.05	1	0.0101	0.0203	TRIM52-AS1->TRIM52_antisense_RNA_1_(head_to_head),chr5:180688213-180699308:+,NELL2->chr12:44902058-45315631:-,neural_EGFL_like_2	UMUC3_URINARY_TRACT	0.05	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000522
SNUC1_LARGE_INTESTINE	KIAA1199--RP11-66B24.2	410	159	KIAA1199	6079	chr15:81173477:+	RP11-66B24.2	36992	chr15:101390416:+	ONLY_REF_SPLICE	YES	125	3	0.82	0.99	4.9528	1.9207	KIAA1199->chr15:81071684-81244117:+,RP11-66B24.2->chr15:101389766-101402376:+	SNUC1_LARGE_INTESTINE	0.82	0.99	6.8735	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	APIP--SLC1A2	254	220	APIP	1272	chr11:34937775:-	SLC1A2	22665	chr11:35339063:-	ONLY_REF_SPLICE	YES	143	6	0.77	0.99	3.0683	2.6576	APIP->APAF1_interacting_protein,chr11:34874641-34938046:-,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNUC1_LARGE_INTESTINE	0.77	0.99	5.7259	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	KIAA1199--RP11-66B24.2	241	50	KIAA1199	6079	chr15:81173477:+	RP11-66B24.2	38837	chr15:101395436:+	ONLY_REF_SPLICE	YES	125	5	0.7	0.98	2.9113	0.604	KIAA1199->chr15:81071684-81244117:+,RP11-66B24.2->chr15:101389766-101402376:+	SNUC1_LARGE_INTESTINE	0.7	0.98	3.5153	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	ITPR1--PDHX	179	100	ITPR1	23400	chr3:4713338:+	PDHX	76477	chr11:34937775:+	INCL_NON_REF_SPLICE	YES	5	11	0.98	0.96	2.1623	1.208	ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNUC1_LARGE_INTESTINE	0.96	0.98	3.3703	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	CYFIP1--USP3	181	10	CYFIP1	1777	chr15:22892781:+	USP3	57280	chr15:63862632:+	ONLY_REF_SPLICE	YES	9	303	0.95	0.39	2.1865	0.1208	CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1,USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3	SNUC1_LARGE_INTESTINE	0.39	0.95	2.3073	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	ITPR1--PDHX	118	160	ITPR1	31087	chr3:4725453:+	PDHX	76477	chr11:34937775:+	INCL_NON_REF_SPLICE	YES	3	11	0.99	0.96	1.4254	1.9328	ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNUC1_LARGE_INTESTINE	0.96	0.99	3.3582	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	CHD2--STARD9	126	48	CHD2	29840	chr15:93515647:+	STARD9	97137	chr15:43008875:+	ONLY_REF_SPLICE	YES	6	1	0.97	0.99	1.5221	0.5798	{Klijn_CCL:Colo-Rectal=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,STARD9->StAR_related_lipid_transfer_domain_containing_9,chr15:42867857-43013179:+	SNUC1_LARGE_INTESTINE	0.97	0.99	2.1019	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	APIP--SLC1A2	16	225	APIP	1272	chr11:34937775:-	SLC1A2	21546	chr11:35344226:-	ONLY_REF_SPLICE	YES	143	0	0.63	1	0.1933	2.718	APIP->APAF1_interacting_protein,chr11:34874641-34938046:-,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNUC1_LARGE_INTESTINE	0.63	1	2.9113	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	FAN1--CHRFAM7A	56	40	FAN1	16511	chr15:31222874:+	CHRFAM7A	30559	chr15:30665348:-	ONLY_REF_SPLICE	YES	47	0	0.67	1	0.6765	0.4832	FAN1->FANCD2/FANCI-associated_nuclease_1,chr15:31196055-31235311:+,CHRFAM7A->CHRNA7_(exons_5-10)_and_FAM7A_(exons_A-E)_fusion,chr15:30653443-30686052:-	SNUC1_LARGE_INTESTINE	0.67	1	1.1597	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	ITPR1--PDHX	19	144	ITPR1	30980	chr3:4725346:+	PDHX	76477	chr11:34937775:+	INCL_NON_REF_SPLICE	YES	19	11	0.9	0.94	0.2295	1.7395	ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNUC1_LARGE_INTESTINE	0.9	0.94	1.969	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	PAQR5--IQCH	52	12	PAQR5	1110	chr15:69591395:+	IQCH	31483	chr15:67649683:+	ONLY_REF_SPLICE	YES	29	6	0.69	0.91	0.6282	0.145	PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+	SNUC1_LARGE_INTESTINE	0.69	0.91	0.7732	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	KIAA1199--RP11-66B24.2	34	12	KIAA1199	6079	chr15:81173477:+	RP11-66B24.2	40669	chr15:101400005:+	ONLY_REF_SPLICE	YES	125	7	0.27	0.87	0.4107	0.145	KIAA1199->chr15:81071684-81244117:+,RP11-66B24.2->chr15:101389766-101402376:+	SNUC1_LARGE_INTESTINE	0.27	0.87	0.5557	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	C11orf35--SLC1A2	26	20	C11orf35	6475	chr11:555305:-	SLC1A2	14315	chr11:35339063:-	ONLY_REF_SPLICE	YES	215	6	0.18	0.88	0.3141	0.2416	C11orf35->chr11:554855-560779:-,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNUC1_LARGE_INTESTINE	0.18	0.88	0.5557	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	KIAA1199--RP11-66B24.2	14	50	KIAA1199	6079	chr15:81173477:+	RP11-66B24.2	38833	chr15:101395432:+	INCL_NON_REF_SPLICE	YES	125	5	0.34	0.93	0.1691	0.604	KIAA1199->chr15:81071684-81244117:+,RP11-66B24.2->chr15:101389766-101402376:+	SNUC1_LARGE_INTESTINE	0.34	0.93	0.7731	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	ATAD5--LRRC37BP1	11	13	ATAD5	20714	chr17:29206505:+	LRRC37BP1	29159	chr17:28956698:+	ONLY_REF_SPLICE	YES	30	0	0.44	1	0.1329	0.157	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,LRRC37BP1->chr17:28956698-28964482:+,leucine_rich_repeat_containing_37B_pseudogene_1	SNUC1_LARGE_INTESTINE	0.44	1	0.2899	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	CHD2--STARD9	3	34	CHD2	29783	chr15:93515590:+	STARD9	97137	chr15:43008875:+	INCL_NON_REF_SPLICE	YES	4	1	0.9	0.97	0.0362	0.4107	{Klijn_CCL:Colo-Rectal=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,STARD9->StAR_related_lipid_transfer_domain_containing_9,chr15:42867857-43013179:+	SNUC1_LARGE_INTESTINE	0.9	0.97	0.4469	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	SPG11--DAPK2	7	10	SPG11	28267	chr15:44887457:-	DAPK2	58117	chr15:64275953:-	ONLY_REF_SPLICE	YES	71	3	0.19	0.85	0.0846	0.1208	SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	SNUC1_LARGE_INTESTINE	0.19	0.85	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	FAN1--CHRFAM7A	1	15	FAN1	15382	chr15:31221600:+	CHRFAM7A	30559	chr15:30665348:-	ONLY_REF_SPLICE	NO	56	0	0.22	1	0.0121	0.1812	FAN1->FANCD2/FANCI-associated_nuclease_1,chr15:31196055-31235311:+,CHRFAM7A->CHRNA7_(exons_5-10)_and_FAM7A_(exons_A-E)_fusion,chr15:30653443-30686052:-	SNUC1_LARGE_INTESTINE	0.22	1	0.1933	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	TPST1--APC	4	1	TPST1	5907	chr7:65751696:+	APC	26341	chr5:112151192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0.0121	{Klijn_CCL:Colo-Rectal=1},TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+	SNUC1_LARGE_INTESTINE	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	ATAD5--LRRC37BP1	2	7	ATAD5	20714	chr17:29206505:+	LRRC37BP1	30274	chr17:28958773:+	ONLY_REF_SPLICE	YES	30	3	0.23	0.75	0.0242	0.0846	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,LRRC37BP1->chr17:28956698-28964482:+,leucine_rich_repeat_containing_37B_pseudogene_1	SNUC1_LARGE_INTESTINE	0.23	0.75	0.1088	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	KIAA1199--RP11-507B12.1	3	2	KIAA1199	6079	chr15:81173477:+	RP11-507B12.1	38412	chr15:61931911:-	ONLY_REF_SPLICE	YES	125	0	0.04	1	0.0362	0.0242	KIAA1199->chr15:81071684-81244117:+,RP11-507B12.1->chr15:61931548-62007370:-	SNUC1_LARGE_INTESTINE	0.04	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	APC--TPST1	3	1	APC	10591	chr5:112137080:+	TPST1	38877	chr7:65751498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0.0121	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1	SNUC1_LARGE_INTESTINE	1	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	C17orf76-AS1--CALB1	3	0	C17orf76-AS1	1593	chr17:16342728:+	CALB1	16445	chr8:91094330:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	C17orf76-AS1->chr17:16342136-16381992:+,CALB1->calbindin_1,chr8:91070836-91107703:-	SNUC1_LARGE_INTESTINE	1	1	0.0362	TRUE	0	1	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	TBC1D2B--TLN2	3	0	TBC1D2B	16723	chr15:78293961:-	TLN2	45964	chr15:62989887:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	TBC1D2B->TBC1_domain_family_member_2B,chr15:78276378-78370066:-,TLN2->chr15:62682725-63136830:+,talin_2	SNUC1_LARGE_INTESTINE	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	THSD4--BBS4	2	1	THSD4	22199	chr15:72040933:+	BBS4	42615	chr15:73002041:+	ONLY_REF_SPLICE	YES	5	12	0.38	0.2	0.0242	0.0121	THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,BBS4->Bardet-Biedl_syndrome_4,chr15:72978527-73030817:+	SNUC1_LARGE_INTESTINE	0.2	0.38	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	FAN1--CHRFAM7A	2	0	FAN1	11564	chr15:31214557:+	CHRFAM7A	30559	chr15:30665348:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	FAN1->FANCD2/FANCI-associated_nuclease_1,chr15:31196055-31235311:+,CHRFAM7A->CHRNA7_(exons_5-10)_and_FAM7A_(exons_A-E)_fusion,chr15:30653443-30686052:-	SNUC1_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	METTL4--LPIN2	2	0	METTL4	1361	chr18:2571148:-	LPIN2	21892	chr18:2960847:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	METTL4->chr18:2537524-2571508:-,methyltransferase_like_4,LPIN2->chr18:2916992-3013313:-,lipin_2	SNUC1_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	PPCDC--SNX1	2	0	PPCDC	1072	chr15:75315967:+	SNX1	16277	chr15:64404772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PPCDC->chr15:75315896-75409803:+,phosphopantothenoylcysteine_decarboxylase,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	SNUC1_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	PROSC--ACAT2	2	0	PROSC	2996	chr8:37623873:+	ACAT2	14987	chr6:160183951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),ACAT2->acetyl-CoA_acetyltransferase_2,chr6:160181360-160200144:+	SNUC1_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	RORA--USP3	2	0	RORA	1267	chr15:61521252:-	USP3	48183	chr15:63824846:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3	SNUC1_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	RP4-756H11.3--CDC42	2	0	RP4-756H11.3	1089	chr7:66119613:+	CDC42	12458	chr1:22404922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RP4-756H11.3->chr7:66119525-66134842:+,CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+	SNUC1_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	GPR39--AC016909.1	1	3	GPR39	2325	chr2:133175471:+	AC016909.1	11439	chr2:133687452:+	ONLY_REF_SPLICE	YES	48	0	0.08	1	0.0121	0.0362	GPR39->G_protein-coupled_receptor_39,chr2:133174147-133404132:+,AC016909.1->chr2:133673130-133689067:+	SNUC1_LARGE_INTESTINE	0.08	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000722
8505C_THYROID	KIAA0020--CDC37L1	28	26	KIAA0020	3511	chr9:2837180:-	CDC37L1	28004	chr9:4697096:+	ONLY_REF_SPLICE	YES	111	11	0.33	0.83	0.4089	0.3797	KIAA0020->chr9:2720469-2844241:-,CDC37L1->cell_division_cycle_37_like_1,chr9:4679559-4708398:+	8505C_THYROID	0.33	0.83	0.7886	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	UBAP2--SMU1	32	4	UBAP2	1125	chr9:34048823:-	SMU1	36549	chr9:33076727:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.4673	0.0584	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans)	8505C_THYROID	0.97	1	0.5257	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	UBAP2--SMU1	19	4	UBAP2	1125	chr9:34048823:-	SMU1	37696	chr9:33073804:-	ONLY_REF_SPLICE	YES	1	7	0.96	0.77	0.2775	0.0584	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans)	8505C_THYROID	0.77	0.96	0.3359	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	KIAA0020--CDC37L1	7	40	KIAA0020	19905	chr9:2782756:-	CDC37L1	28004	chr9:4697096:+	ONLY_REF_SPLICE	YES	0	11	1	0.81	0.1022	0.5841	KIAA0020->chr9:2720469-2844241:-,CDC37L1->cell_division_cycle_37_like_1,chr9:4679559-4708398:+	8505C_THYROID	0.81	1	0.6863	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	ZNF823--AC005624.2	13	3	ZNF823	1193	chr19:11849632:-	AC005624.2	10462	chr19:2459098:-	ONLY_REF_SPLICE	YES	9	0	0.64	1	0.1898	0.0438	ZNF823->chr19:11832080-11849824:-,zinc_finger_protein_823,AC005624.2->chr19:2458933-2462183:-	8505C_THYROID	0.64	1	0.2336	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	ZNF823--LMNB2	8	0	ZNF823	1193	chr19:11849632:-	LMNB2	10584	chr19:2444538:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1168	0	ZNF823->chr19:11832080-11849824:-,zinc_finger_protein_823,LMNB2->chr19:2427636-2456994:-,lamin_B2	8505C_THYROID	1	1	0.1168	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	CDKN2B-AS1--RP11-18A15.1	6	1	CDKN2B-AS1	1384	chr9:21995160:+	RP11-18A15.1	27103	chr9:26748214:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0876	0.0146	CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+,RP11-18A15.1->chr9:26746951-26786872:+	8505C_THYROID	0.64	1	0.1022	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	ADARB1--FAM207A	4	0	ADARB1	1941	chr21:46494708:+	FAM207A	36694	chr21:46380015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0584	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[96864],ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+,FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A	8505C_THYROID	1	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	CDKN2A--KIAA0020	3	4	CDKN2A	2163	chr9:21994138:-	KIAA0020	14578	chr9:2838517:-	ONLY_REF_SPLICE	YES	167	1	0.04	0.88	0.0438	0.0584	CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,KIAA0020->chr9:2720469-2844241:-	8505C_THYROID	0.04	0.88	0.1022	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	CTD-2544M6.1--LINC00923	3	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	10269	chr15:98301891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0438	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	8505C_THYROID	1	1	0.0438	TRUE	0	3	0	6	3	TRUE	ACH-001307
8505C_THYROID	UBAP2--SMU1	3	0	UBAP2	1125	chr9:34048823:-	SMU1	40060	chr9:33068932:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0438	0	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans)	8505C_THYROID	1	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	ANKRD28--COLQ	2	0	ANKRD28	1395	chr3:15900884:-	COLQ	43954	chr3:15531144:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,COLQ->chr3:15491640-15563258:-,collagen-like_tail_subunit_(single_strand_of_homotrimer)_of_asymmetric_acetylcholinesterase	8505C_THYROID	1	1	0.0292	TRUE	0	1	0	1	1	TRUE	ACH-001307
8505C_THYROID	ANXA2--NARG2	2	0	ANXA2	2915	chr15:60690142:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	8505C_THYROID	1	1	0.0292	TRUE	0	0	0	3	0	TRUE	ACH-001307
8505C_THYROID	POLDIP3--RANGAP1	2	0	POLDIP3	9001	chr22:42987961:-	RANGAP1	20100	chr22:41677086:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	POLDIP3->chr22:42979727-43010968:-,polymerase_(DNA)_delta_interacting_protein_3,RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-	8505C_THYROID	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	TPX2--BCL2L1	2	0	TPX2	2458	chr20:30330450:+	BCL2L1	28167	chr20:30253889:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_INVERSION:+:-:[15282],TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	8505C_THYROID	1	1	0.0292	TRUE	0	1	0	1	0	TRUE	ACH-001307
8505C_THYROID	YWHAQ--LAPTM4A	2	0	YWHAQ	1856	chr2:9770288:-	LAPTM4A	14184	chr2:20240772:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta,LAPTM4A->chr2:20232411-20251789:-,lysosomal_protein_transmembrane_4_alpha	8505C_THYROID	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	UBAP2--SMU1	1	2	UBAP2	1072	chr9:34048876:-	SMU1	37696	chr9:33073804:-	ONLY_REF_SPLICE	NO	0	7	1	0.3	0.0146	0.0292	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans)	8505C_THYROID	0.3	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-001307
HS766T_PANCREAS	IRAK2--BRK1	993	549	IRAK2	2367	chr3:10219704:+	BRK1	19794	chr3:10167310:+	ONLY_REF_SPLICE	YES	145	703	0.91	0.69	13.1224	7.255	LOCAL_REARRANGEMENT:+:[37675],IRAK2->Oncogene{Bushman},chr3:10206549-10285427:+,interleukin_1_receptor_associated_kinase_2,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	HS766T_PANCREAS	0.69	0.91	20.3774	TRUE	0	2	0	2	1	TRUE	ACH-000178
HS766T_PANCREAS	CCAT1--CASC8	86	88	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	28	0	0.86	1	1.1365	1.1629	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	0.86	1	2.2994	TRUE	0	7	0	7	7	TRUE	ACH-000178
HS766T_PANCREAS	IRAK2--BRK1	1	299	IRAK2	2367	chr3:10219704:+	BRK1	20437	chr3:10167953:+	ONLY_REF_SPLICE	NO	145	771	0.67	0.28	0.0132	3.9512	LOCAL_REARRANGEMENT:+:[37675],IRAK2->Oncogene{Bushman},chr3:10206549-10285427:+,interleukin_1_receptor_associated_kinase_2,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	HS766T_PANCREAS	0.28	0.67	3.9644	TRUE	0	2	0	2	1	TRUE	ACH-000178
HS766T_PANCREAS	IRAK2--BRK1	2	168	IRAK2	1184	chr3:10206732:+	BRK1	19794	chr3:10167310:+	ONLY_REF_SPLICE	NO	295	703	0.37	0.19	0.0264	2.2201	LOCAL_REARRANGEMENT:+:[37675],IRAK2->Oncogene{Bushman},chr3:10206549-10285427:+,interleukin_1_receptor_associated_kinase_2,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	HS766T_PANCREAS	0.19	0.37	2.2465	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	CCAT1--CASC8	1	88	CCAT1	1279	chr8:128231055:-	CASC8	8200	chr8:128493316:-	ONLY_REF_SPLICE	NO	28	0	0.76	1	0.0132	1.1629	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	0.76	1	1.1761	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	CCAT1--CASC8	3	66	CCAT1	1274	chr8:128231060:-	CASC8	12971	chr8:128433208:-	INCL_NON_REF_SPLICE	YES	23	0	0.75	1	0.0396	0.8722	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	0.75	1	0.9118	TRUE	0	7	0	7	7	TRUE	ACH-000178
HS766T_PANCREAS	RP11-255B23.4--CASC8	14	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	12367	chr8:128433208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.185	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	1	1	0.185	TRUE	0	2	0	2	2	TRUE	ACH-000178
HS766T_PANCREAS	CCAT1--CASC8	1	33	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	28	18	0.55	0.65	0.0132	0.4361	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	0.55	0.65	0.4493	TRUE	0	7	0	14	6	TRUE	ACH-000178
HS766T_PANCREAS	EIF4G1--DNAJA3	5	0	EIF4G1	14880	chr3:184046544:+	DNAJA3	28435	chr16:4491507:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0661	0	EIF4G1->Oncogene{Bushman},chr3:184032283-184053146:+,eukaryotic_translation_initiation_factor_4_gamma_1,DNAJA3->DnaJ_heat_shock_protein_family_(Hsp40)_member_A3,chr16:4475806-4506776:+	HS766T_PANCREAS	1	1	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	RP11-255B23.4--CASC8	3	1	RP11-255B23.4	2391	chr8:128200030:-	CASC8	12367	chr8:128433208:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0396	0.0132	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	0.44	1	0.0528	TRUE	0	1	0	2	1	TRUE	ACH-000178
HS766T_PANCREAS	HNRNPM--PIGV	2	0	HNRNPM	5233	chr19:8528570:+	PIGV	28330	chr1:27124054:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,PIGV->chr1:27113963-27124889:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_V	HS766T_PANCREAS	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	HPS1--SNHG7	2	0	HPS1	3352	chr10:100202881:-	SNHG7	24076	chr9:139621538:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	HPS1->HPS1,_biogenesis_of_lysosomal_organelles_complex_3_subunit_1,chr10:100175955-100206684:-,SNHG7->chr9:139615818-139622636:-,small_nucleolar_RNA_host_gene_7	HS766T_PANCREAS	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	PRSS23--PICALM	2	0	PRSS23	8412	chr11:86534635:+	PICALM	25674	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},PRSS23->chr11:86502101-86663952:+,protease,_serine_23,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	HS766T_PANCREAS	1	1	0.0264	TRUE	0	3	0	5	0	TRUE	ACH-000178
HS766T_PANCREAS	RBM5--B2M	2	0	RBM5	6902	chr3:50137484:+	B2M	32938	chr15:45009805:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	HS766T_PANCREAS	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	RLIM--FTX	2	0	RLIM	1196	chrX:73834257:-	FTX	27007	chrX:73289419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	RLIM->chrX:73805052-73834452:-,ring_finger_protein,_LIM_domain_interacting,FTX->FTX_transcript,_XIST_regulator_(non-protein_coding),chrX:73183790-73513409:-	HS766T_PANCREAS	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	SEPT11--PSPC1	2	0	SEPT11	18490	chr4:77952123:+	PSPC1	41174	chr13:20251963:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	SEPT11->chr4:77870856-77961537:+,septin_11,PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	HS766T_PANCREAS	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	TRA2B--ACTB	2	0	TRA2B	1312	chr3:185655613:-	ACTB	26961	chr7:5569294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS766T_PANCREAS	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	RP11-255B23.4--CASC8	1	1	RP11-255B23.4	2391	chr8:128200030:-	CASC8	10585	chr8:128455965:-	ONLY_REF_SPLICE	NO	5	1	0.29	0.67	0.0132	0.0132	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	0.29	0.67	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
KYSE410_OESOPHAGUS	MYEOV--CTD-2530H12.4	209	344	MYEOV	1439	chr11:69062043:+	CTD-2530H12.4	14720	chr11:75305146:+	ONLY_REF_SPLICE	YES	590	0	0.48	1	3.0416	5.0062	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,CTD-2530H12.4->chr11:75294241-75305710:+	KYSE410_OESOPHAGUS	0.48	1	8.0478	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	GSTP1--CPT1A	246	182	GSTP1	2647	chr11:67352712:+	CPT1A	27969	chr11:68530229:-	ONLY_REF_SPLICE	YES	3	4	0.99	0.99	3.58	2.6486	GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1,CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-	KYSE410_OESOPHAGUS	0.99	0.99	6.2286	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	NLK--PRIM2	192	214	NLK	5733	chr17:26449758:+	PRIM2	23494	chr6:57183235:+	ONLY_REF_SPLICE	YES	143	8	0.74	0.98	2.7942	3.1143	NLK->chr17:26368763-26523407:+,nemo_like_kinase,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	KYSE410_OESOPHAGUS	0.74	0.98	5.9085	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ATM--DPP3	158	42	ATM	1703	chr11:108093913:+	DPP3	87052	chr11:66258724:+	ONLY_REF_SPLICE	YES	5	134	0.98	0.6	2.2994	0.6112	ATM->ATM_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:108093211-108239829:+,DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3	KYSE410_OESOPHAGUS	0.6	0.98	2.9106	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	SHANK2--CARD17	130	79	SHANK2	30935	chr11:70544793:-	CARD17	64502	chr11:104970148:-	ONLY_REF_SPLICE	YES	48	0	0.81	1	1.8919	1.1497	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,CARD17->caspase_recruitment_domain_family_member_17,chr11:104963196-104972158:-	KYSE410_OESOPHAGUS	0.81	1	3.0416	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	UVRAG--DYNC2H1	107	78	UVRAG	1358	chr11:75526569:+	DYNC2H1	115934	chr11:103228971:+	ONLY_REF_SPLICE	YES	62	46	0.75	0.8	1.5572	1.1351	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	KYSE410_OESOPHAGUS	0.75	0.8	2.6923	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MYEOV--CTD-2530H12.4	21	387	MYEOV	5305	chr11:69066895:+	CTD-2530H12.4	14720	chr11:75305146:+	ONLY_REF_SPLICE	YES	71	0	0.85	1	0.3056	5.632	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,CTD-2530H12.4->chr11:75294241-75305710:+	KYSE410_OESOPHAGUS	0.85	1	5.9376	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	C6orf48--MSH5	79	85	C6orf48	4904	chr6:31807395:+	MSH5	20380	chr6:31725942:+	INCL_NON_REF_SPLICE	YES	123	150	0.57	0.52	1.1497	1.237	LOCAL_REARRANGEMENT:+:[69763],C6orf48->chr6:31802385-31807541:+,chromosome_6_open_reading_frame_48,MSH5->chr6:31707725-31732622:+,mutS_homolog_5	KYSE410_OESOPHAGUS	0.52	0.57	2.3867	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	UBE2M--EYS	90	25	UBE2M	1688	chr19:59069640:-	EYS	9346	chr6:66205886:-	ONLY_REF_SPLICE	YES	230	0	0.33	1	1.3098	0.3638	UBE2M->chr19:59067079-59070327:-,ubiquitin_conjugating_enzyme_E2_M,EYS->chr6:64429876-66417118:-,eyes_shut_homolog_(Drosophila)	KYSE410_OESOPHAGUS	0.33	1	1.6736	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	RBL1--CA8	68	67	RBL1	12024	chr20:35675456:-	CA8	40414	chr8:61102544:-	ONLY_REF_SPLICE	YES	37	0	0.78	1	0.9896	0.975	RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1,CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-	KYSE410_OESOPHAGUS	0.78	1	1.9646	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MB21D1--RP11-505P4.7	64	80	MB21D1	2972	chr6:74155251:-	RP11-505P4.7	16202	chr6:74280010:+	ONLY_REF_SPLICE	YES	122	0	0.54	1	0.9314	1.1642	LOCAL_INVERSION:-:+:[71342],MB21D1->Mab-21_domain_containing_1,chr6:74123238-74161999:-,RP11-505P4.7->chr6:74233341-74280319:+	KYSE410_OESOPHAGUS	0.54	1	2.0956	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	FBXO22--COMMD4	49	25	FBXO22	7073	chr15:76209735:+	COMMD4	17793	chr15:75630403:+	ONLY_REF_SPLICE	YES	145	5	0.34	0.94	0.7131	0.3638	FBXO22->F-box_protein_22,chr15:76196200-76227609:+,COMMD4->COMM_domain_containing_4,chr15:75628232-75634268:+	KYSE410_OESOPHAGUS	0.34	0.94	1.0769	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	SUV420H1--SHANK2	8	189	SUV420H1	1352	chr11:67980944:-	SHANK2	45470	chr11:70742672:-	ONLY_REF_SPLICE	YES	25	3	0.89	0.98	0.1164	2.7505	SUV420H1->chr11:67922330-67981295:-,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	KYSE410_OESOPHAGUS	0.89	0.98	2.8669	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	SUV420H1--SHANK2	1	209	SUV420H1	1691	chr11:67980605:-	SHANK2	45470	chr11:70742672:-	ONLY_REF_SPLICE	YES	37	3	0.85	0.99	0.0146	3.0416	SUV420H1->chr11:67922330-67981295:-,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	KYSE410_OESOPHAGUS	0.85	0.99	3.0562	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	TRIM29--UVRAG	36	20	TRIM29	18786	chr11:119986046:-	UVRAG	46542	chr11:75776754:+	ONLY_REF_SPLICE	YES	122	25	0.31	0.69	0.5239	0.2911	TRIM29->chr11:119981983-120056237:-,tripartite_motif_containing_29,UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+	KYSE410_OESOPHAGUS	0.31	0.69	0.815	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	SHANK2--CARD17	27	44	SHANK2	30935	chr11:70544793:-	CARD17	65561	chr11:104963311:-	ONLY_REF_SPLICE	YES	48	0	0.6	1	0.3929	0.6403	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,CARD17->caspase_recruitment_domain_family_member_17,chr11:104963196-104972158:-	KYSE410_OESOPHAGUS	0.6	1	1.0332	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	GDPD5--WNT11	30	31	GDPD5	22251	chr11:75160022:-	WNT11	39010	chr11:75907762:-	ONLY_REF_SPLICE	YES	34	0	0.64	1	0.4366	0.4511	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,WNT11->Wnt_family_member_11,chr11:75897369-75921780:-	KYSE410_OESOPHAGUS	0.64	1	0.8877	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	GSTP1--CPT1A	6	94	GSTP1	2178	chr11:67352243:+	CPT1A	27969	chr11:68530229:-	ONLY_REF_SPLICE	YES	69	4	0.59	0.96	0.0873	1.368	GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1,CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-	KYSE410_OESOPHAGUS	0.59	0.96	1.4553	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ZMYND8--SULF2	18	28	ZMYND8	14364	chr20:45915973:-	SULF2	44224	chr20:46331414:-	ONLY_REF_SPLICE	YES	86	51	0.35	0.47	0.262	0.4075	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KYSE410_OESOPHAGUS	0.35	0.47	0.6695	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ATM--DPP3	12	45	ATM	2203	chr11:108094413:+	DPP3	87052	chr11:66258724:+	ONLY_REF_SPLICE	YES	16	134	0.78	0.3	0.1746	0.6549	ATM->ATM_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:108093211-108239829:+,DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3	KYSE410_OESOPHAGUS	0.3	0.78	0.8295	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	GLCE--PTPN9	16	28	GLCE	1174	chr15:69453096:+	PTPN9	25854	chr15:75782642:-	ONLY_REF_SPLICE	YES	27	66	0.62	0.4	0.2328	0.4075	GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase,PTPN9->chr15:75759462-75871630:-,protein_tyrosine_phosphatase,_non-receptor_type_9	KYSE410_OESOPHAGUS	0.4	0.62	0.6403	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	NLK--PRIM2	7	54	NLK	2595	chr17:26370357:+	PRIM2	23494	chr6:57183235:+	ONLY_REF_SPLICE	YES	315	8	0.16	0.88	0.1019	0.7859	NLK->chr17:26368763-26523407:+,nemo_like_kinase,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	KYSE410_OESOPHAGUS	0.16	0.88	0.8878	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	GIGYF2--DNER	20	0	GIGYF2	1094	chr2:233562102:+	DNER	66254	chr2:230341969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2911	0	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing	KYSE410_OESOPHAGUS	1	1	0.2911	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	OSBPL1A--ULK4	15	14	OSBPL1A	25090	chr18:21819184:-	ULK4	74259	chr3:41746797:-	ONLY_REF_SPLICE	YES	85	6	0.25	0.83	0.2183	0.2037	OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	KYSE410_OESOPHAGUS	0.25	0.83	0.422	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ZMYND8--SULF2	8	34	ZMYND8	14364	chr20:45915973:-	SULF2	42833	chr20:46335647:-	ONLY_REF_SPLICE	YES	86	55	0.33	0.43	0.1164	0.4948	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KYSE410_OESOPHAGUS	0.33	0.43	0.6112	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	RNF170--THBD	14	7	RNF170	4293	chr8:42742871:-	THBD	21504	chr20:23027446:-	INCL_NON_REF_SPLICE	YES	10	46	0.68	0.31	0.2037	0.1019	RNF170->chr8:42704780-42752433:-,ring_finger_protein_170,THBD->chr20:23026270-23030378:-,thrombomodulin	KYSE410_OESOPHAGUS	0.31	0.68	0.3056	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	NLK--PRIM2	1	57	NLK	5733	chr17:26449758:+	PRIM2	24657	chr6:57185255:+	ONLY_REF_SPLICE	YES	143	723	0.29	0.07	0.0146	0.8295	NLK->chr17:26368763-26523407:+,nemo_like_kinase,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	KYSE410_OESOPHAGUS	0.07	0.29	0.8441	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	DENND1A--RP11-85O21.2	14	0	DENND1A	1264	chr9:126692168:-	RP11-85O21.2	44503	chr9:126770370:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2037	0	LOCAL_REARRANGEMENT:-:[76125],DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,RP11-85O21.2->chr9:126768556-126771675:-	KYSE410_OESOPHAGUS	1	1	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	PRIM2--CDK12	10	13	PRIM2	8956	chr6:57246966:+	CDK12	40057	chr17:37680927:+	ONLY_REF_SPLICE	YES	400	108	0.05	0.18	0.1455	0.1892	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	KYSE410_OESOPHAGUS	0.05	0.18	0.3347	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	UVRAG--DYNC2H1	4	30	UVRAG	1358	chr11:75526569:+	DYNC2H1	117051	chr11:103270391:+	ONLY_REF_SPLICE	YES	62	118	0.35	0.22	0.0582	0.4366	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	KYSE410_OESOPHAGUS	0.22	0.35	0.4948	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	GLCE--PTPN9	3	17	GLCE	1174	chr15:69453096:+	PTPN9	28440	chr15:75772255:-	ONLY_REF_SPLICE	YES	27	60	0.43	0.25	0.0437	0.2474	GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase,PTPN9->chr15:75759462-75871630:-,protein_tyrosine_phosphatase,_non-receptor_type_9	KYSE410_OESOPHAGUS	0.25	0.43	0.2911	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ZMYND8--SULF2	3	16	ZMYND8	13308	chr20:45918931:-	SULF2	44224	chr20:46331414:-	ONLY_REF_SPLICE	YES	98	51	0.16	0.27	0.0437	0.2328	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KYSE410_OESOPHAGUS	0.16	0.27	0.2765	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	SPTLC2--TRAV1-2	5	6	SPTLC2	11403	chr14:78018439:-	TRAV1-2	25544	chr14:22111136:+	INCL_NON_REF_SPLICE	YES	79	0	0.12	1	0.0728	0.0873	SPTLC2->chr14:77972340-78083116:-,serine_palmitoyltransferase_long_chain_base_subunit_2,TRAV1-2->T_cell_receptor_alpha_variable_1-2,chr14:22111109-22111798:+	KYSE410_OESOPHAGUS	0.12	1	0.1601	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	CUL5--DNAL1	3	11	CUL5	10862	chr11:107944224:+	DNAL1	27544	chr14:74117870:+	ONLY_REF_SPLICE	YES	108	0	0.11	1	0.0437	0.1601	CUL5->chr11:107879459-107978503:+,cullin_5,DNAL1->chr14:74111578-74170435:+,dynein_axonemal_light_chain_1	KYSE410_OESOPHAGUS	0.11	1	0.2038	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	CDK5RAP2--STOM	4	6	CDK5RAP2	14744	chr9:123280705:-	STOM	58164	chr9:124103686:-	ONLY_REF_SPLICE	YES	65	76	0.13	0.12	0.0582	0.0873	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,STOM->chr9:124101355-124132531:-,stomatin	KYSE410_OESOPHAGUS	0.12	0.13	0.1455	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	UVRAG--DYNC2H1	2	13	UVRAG	1358	chr11:75526569:+	DYNC2H1	118261	chr11:103306671:+	ONLY_REF_SPLICE	YES	62	250	0.19	0.06	0.0291	0.1892	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	KYSE410_OESOPHAGUS	0.06	0.19	0.2183	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	FAM179B--RP11-945F5.1	4	4	FAM179B	3260	chr14:45433670:+	RP11-945F5.1	34357	chr14:46037729:+	ONLY_REF_SPLICE	YES	12	0	0.4	1	0.0582	0.0582	FAM179B->chr14:45431411-45543634:+,family_with_sequence_similarity_179_member_B,RP11-945F5.1->chr14:46037198-46038272:+	KYSE410_OESOPHAGUS	0.4	1	0.1164	TRUE	0	1	0	2	1	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MCM3AP-AS1--LSS	5	0	MCM3AP-AS1	1050	chr21:47649180:+	LSS	22134	chr21:47639486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0728	0	LOCAL_INVERSION:+:-:[393],MCM3AP-AS1->MCM3AP_antisense_RNA_1,chr21:47649131-47679304:+,LSS->chr21:47608055-47648738:-,lanosterol_synthase_(2,3-oxidosqualene-lanosterol_cyclase)	KYSE410_OESOPHAGUS	1	1	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	CUL5--DNAL1	3	6	CUL5	10862	chr11:107944224:+	DNAL1	29752	chr14:74121550:+	ONLY_REF_SPLICE	YES	108	8	0.08	0.53	0.0437	0.0873	CUL5->chr11:107879459-107978503:+,cullin_5,DNAL1->chr14:74111578-74170435:+,dynein_axonemal_light_chain_1	KYSE410_OESOPHAGUS	0.08	0.53	0.131	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	TET1--DDX21	4	0	TET1	5177	chr10:70360791:+	DDX21	25038	chr10:70719562:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0582	0	TET1->Oncogene{Bushman},chr10:70320413-70454239:+,tet_methylcytosine_dioxygenase_1,DDX21->DEAD-box_helicase_21,chr10:70715884-70744829:+	KYSE410_OESOPHAGUS	1	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	CUL5--DNAL1	2	7	CUL5	10862	chr11:107944224:+	DNAL1	28706	chr14:74119873:+	ONLY_REF_SPLICE	YES	108	7	0.08	0.56	0.0291	0.1019	CUL5->chr11:107879459-107978503:+,cullin_5,DNAL1->chr14:74111578-74170435:+,dynein_axonemal_light_chain_1	KYSE410_OESOPHAGUS	0.08	0.56	0.131	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	OSBPL1A--ULK4	2	7	OSBPL1A	25090	chr18:21819184:-	ULK4	75508	chr3:41723295:-	ONLY_REF_SPLICE	YES	85	4	0.1	0.69	0.0291	0.1019	OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	KYSE410_OESOPHAGUS	0.1	0.69	0.131	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	PTPN13--AFF1	3	1	PTPN13	9224	chr4:87614827:+	AFF1	59592	chr4:87967318:+	ONLY_REF_SPLICE	YES	19	8	0.17	0.33	0.0437	0.0146	GTEx&tcga_normals:1/3694=0.03%,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	KYSE410_OESOPHAGUS	0.17	0.33	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	PDGFC--RXFP1	2	2	PDGFC	6350	chr4:157771373:-	RXFP1	30545	chr4:159514553:+	ONLY_REF_SPLICE	NO	59	0	0.06	1	0.0291	0.0291	PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	KYSE410_OESOPHAGUS	0.06	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MCM3AP-AS1--LSS	1	5	MCM3AP-AS1	5127	chr21:47656240:+	LSS	22134	chr21:47639486:-	ONLY_REF_SPLICE	YES	25	12	0.19	0.33	0.0146	0.0728	LOCAL_INVERSION:+:-:[393],MCM3AP-AS1->MCM3AP_antisense_RNA_1,chr21:47649131-47679304:+,LSS->chr21:47608055-47648738:-,lanosterol_synthase_(2,3-oxidosqualene-lanosterol_cyclase)	KYSE410_OESOPHAGUS	0.19	0.33	0.0874	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ATP2A2--CAPRIN1	2	0	ATP2A2	5892	chr12:110734542:+	CAPRIN1	39992	chr11:34101175:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,CAPRIN1->cell_cycle_associated_protein_1,chr11:34073230-34122703:+	KYSE410_OESOPHAGUS	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ELP2--SLC39A6	2	0	ELP2	1628	chr18:33710034:+	SLC39A6	37556	chr18:33696742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	LOCAL_INVERSION:+:-:[59],ELP2->chr18:33709407-33757909:+,elongator_acetyltransferase_complex_subunit_2,SLC39A6->Oncogene{Bushman},chr18:33688495-33709348:-,solute_carrier_family_39_member_6	KYSE410_OESOPHAGUS	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ERBB2--COASY	2	0	ERBB2	16192	chr17:37872192:+	COASY	32664	chr17:40715979:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,COASY->Coenzyme_A_synthase,chr17:40713485-40718295:+	KYSE410_OESOPHAGUS	1	1	0.0291	TRUE	0	1	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	NSUN2--MTRR	2	0	NSUN2	2419	chr5:6631986:-	MTRR	41632	chr5:7892840:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	NSUN2->NOP2/Sun_RNA_methyltransferase_family_member_2,chr5:6599352-6633404:-,MTRR->5-methyltetrahydrofolate-homocysteine_methyltransferase_reductase,chr5:7851299-7906138:+	KYSE410_OESOPHAGUS	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	PBK--MCPH1	2	0	PBK	2522	chr8:27690573:-	MCPH1	13294	chr8:6266800:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	PBK->PDZ_binding_kinase,chr8:27667137-27695612:-,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	KYSE410_OESOPHAGUS	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	TMEM87B--CEP192	2	0	TMEM87B	12798	chr2:112854729:+	CEP192	26720	chr18:12999420:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	TMEM87B->chr2:112812800-112876895:+,transmembrane_protein_87B,CEP192->centrosomal_protein_192,chr18:12991361-13125051:+	KYSE410_OESOPHAGUS	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	GDPD5--WNT11	1	2	GDPD5	22251	chr11:75160022:-	WNT11	40246	chr11:75905888:-	ONLY_REF_SPLICE	YES	34	16	0.08	0.16	0.0146	0.0291	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,WNT11->Wnt_family_member_11,chr11:75897369-75921780:-	KYSE410_OESOPHAGUS	0.08	0.16	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	PDGFC--RXFP1	1	2	PDGFC	6350	chr4:157771373:-	RXFP1	29151	chr4:159493850:+	ONLY_REF_SPLICE	YES	59	0	0.05	1	0.0146	0.0291	PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	KYSE410_OESOPHAGUS	0.05	1	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MCM3AP-AS1--LSS	1	1	MCM3AP-AS1	2311	chr21:47650441:+	LSS	22134	chr21:47639486:-	ONLY_REF_SPLICE	NO	6	12	0.25	0.14	0.0146	0.0146	LOCAL_INVERSION:+:-:[393],MCM3AP-AS1->MCM3AP_antisense_RNA_1,chr21:47649131-47679304:+,LSS->chr21:47608055-47648738:-,lanosterol_synthase_(2,3-oxidosqualene-lanosterol_cyclase)	KYSE410_OESOPHAGUS	0.14	0.25	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	PTPN13--AFF1	1	1	PTPN13	9224	chr4:87614827:+	AFF1	56916	chr4:87894982:+	ONLY_REF_SPLICE	NO	19	10	0.1	0.17	0.0146	0.0146	GTEx&tcga_normals:1/3694=0.03%,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	KYSE410_OESOPHAGUS	0.1	0.17	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000809
PATU8988T_PANCREAS	ANP32B--NCL	480	8	ANP32B	9252	chr9:100774754:+	NCL	18735	chr2:232326361:-	INCL_NON_REF_SPLICE	YES	977	4376	0.33	0.1	5.0227	0.0837	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0.1	0.33	5.1064	TRUE	0	0	0	7	0	TRUE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	78	0	ANP32B	8161	chr9:100773632:+	NCL	19608	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8162	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	1	1	0.8162	TRUE	0	0	0	7	0	TRUE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	39	0	ANP32B	6936	chr9:100767435:+	NCL	18813	chr2:232326283:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4081	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	1	1	0.4081	TRUE	0	0	0	2	0	TRUE	ACH-000023
PATU8988T_PANCREAS	SMARCA4--C19orf44	17	21	SMARCA4	37709	chr19:11152236:+	C19orf44	53380	chr19:16620310:+	ONLY_REF_SPLICE	YES	10	10	0.79	0.79	0.1779	0.2197	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	PATU8988T_PANCREAS	0.79	0.79	0.3976	TRUE	0	0	0	2	0	TRUE	ACH-000023
PATU8988T_PANCREAS	SMARCA4--C19orf44	8	7	SMARCA4	37709	chr19:11152236:+	C19orf44	54870	chr19:16623825:+	ONLY_REF_SPLICE	YES	10	10	0.6	0.6	0.0837	0.0732	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	PATU8988T_PANCREAS	0.6	0.6	0.1569	TRUE	0	0	0	2	0	TRUE	ACH-000023
PATU8988T_PANCREAS	AP000525.9--LA16c-60G3.6	7	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0732	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	PATU8988T_PANCREAS	1	1	0.0732	TRUE	0	5	0	18	5	TRUE	ACH-000023
PATU8988T_PANCREAS	AKT3--DNAH14	3	10	AKT3	25845	chr1:243708812:-	DNAH14	64778	chr1:225270251:+	ONLY_REF_SPLICE	YES	137	7	0.09	0.65	0.0314	0.1046	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14	PATU8988T_PANCREAS	0.09	0.65	0.136	TRUE	0	0	0	1	0	TRUE	ACH-000023
PATU8988T_PANCREAS	AKT3--DNAH14	2	13	AKT3	25845	chr1:243708812:-	DNAH14	62236	chr1:225266909:+	ONLY_REF_SPLICE	YES	137	5	0.1	0.75	0.0209	0.136	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14	PATU8988T_PANCREAS	0.1	0.75	0.1569	TRUE	0	0	0	1	0	TRUE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	4	0	ANP32B	6911	chr9:100767410:+	NCL	18704	chr2:232326392:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	1	1	0.0419	TRUE	0	0	0	2	0	TRUE	ACH-000023
PATU8988T_PANCREAS	SETD8--CDK2AP1	4	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0419	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	PATU8988T_PANCREAS	1	1	0.0419	TRUE	0	0	0	18	0	TRUE	ACH-000023
PATU8988T_PANCREAS	TAOK1--RP5-1028K7.2	2	2	TAOK1	1561	chr17:27718042:+	RP5-1028K7.2	40560	chr17:38676967:+	ONLY_REF_SPLICE	NO	15	0	0.21	1	0.0209	0.0209	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,RP5-1028K7.2->chr17:38673278-38683254:+	PATU8988T_PANCREAS	0.21	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000023
PATU8988T_PANCREAS	DNAH14--SMYD3	1	4	DNAH14	15371	chr1:225161855:+	SMYD3	129332	chr1:246093239:-	ONLY_REF_SPLICE	YES	7	84	0.42	0.06	0.0105	0.0419	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	PATU8988T_PANCREAS	0.06	0.42	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000023
PATU8988T_PANCREAS	FAM114A2--LARP1	2	0	FAM114A2	1080	chr5:153418417:-	LARP1	27661	chr5:154169885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	FAM114A2->chr5:153369688-153418496:-,family_with_sequence_similarity_114_member_A2,LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+	PATU8988T_PANCREAS	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000023
PATU8988T_PANCREAS	RNF139--ZFAT	2	0	RNF139	1553	chr8:125487531:+	ZFAT	30631	chr8:135545215:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	RNF139->Oncogene{Bushman},chr8:125486979-125500155:+,ring_finger_protein_139,ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing	PATU8988T_PANCREAS	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000023
PATU8988T_PANCREAS	SMARCA4--C19orf44	1	2	SMARCA4	37709	chr19:11152236:+	C19orf44	55966	chr19:16625308:+	ONLY_REF_SPLICE	NO	10	15	0.23	0.17	0.0105	0.0209	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	PATU8988T_PANCREAS	0.17	0.23	0.0314	TRUE	0	0	0	2	0	TRUE	ACH-000023
PATU8988T_PANCREAS	SMARCA4--C19orf44	1	1	SMARCA4	37709	chr19:11152236:+	C19orf44	57133	chr19:16628041:+	ONLY_REF_SPLICE	YES	10	31	0.17	0.06	0.0105	0.0105	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	PATU8988T_PANCREAS	0.06	0.17	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000023
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNK1--TMEM256	847	499	TNK1	6091	chr17:7290470:+	TMEM256	11714	chr17:7307457:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	13.8754	8.1745	NUCLCLUST,LOCAL_INVERSION:+:-:[13201],TNK1->chr17:7283853-7293093:+,tyrosine_kinase_non_receptor_1,TMEM256->chr17:7306294-7307456:-,transmembrane_protein_256	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	22.0499	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SERBP1--IL12RB2	132	98	SERBP1	5066	chr1:67889883:-	IL12RB2	34295	chr1:67855712:+	ONLY_REF_SPLICE	YES	666	0	0.26	1	2.1624	1.6054	LOCAL_INVERSION:-:+:[10910],SERBP1->SERPINE1_mRNA_binding_protein_1,chr1:67873493-67896098:-,IL12RB2->chr1:67773047-67862583:+,interleukin_12_receptor_subunit_beta_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	3.7678	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRD7--ATF6	86	26	BRD7	16369	chr16:50354159:-	ATF6	41782	chr1:161832988:+	ONLY_REF_SPLICE	YES	141	62	0.44	0.64	1.4088	0.4259	BRD7->bromodomain_containing_7,chr16:50347398-50402845:-,ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.64	1.8347	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SERBP1--IL12RB2	63	52	SERBP1	5066	chr1:67889883:-	IL12RB2	35395	chr1:67861230:+	ONLY_REF_SPLICE	YES	666	8	0.15	0.93	1.0321	0.8519	LOCAL_INVERSION:-:+:[10910],SERBP1->SERPINE1_mRNA_binding_protein_1,chr1:67873493-67896098:-,IL12RB2->chr1:67773047-67862583:+,interleukin_12_receptor_subunit_beta_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.93	1.884	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNK1--TMEM256	2	125	TNK1	5595	chr17:7289974:+	TMEM256	12163	chr17:7307008:-	ONLY_REF_SPLICE	YES	168	11	0.43	0.92	0.0328	2.0477	NUCLCLUST,LOCAL_INVERSION:+:-:[13201],TNK1->chr17:7283853-7293093:+,tyrosine_kinase_non_receptor_1,TMEM256->chr17:7306294-7307456:-,transmembrane_protein_256	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.92	2.0805	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLASP2--FBXL2	25	7	CLASP2	30398	chr3:33626242:-	FBXL2	82870	chr3:33426993:+	ONLY_REF_SPLICE	YES	32	2	0.5	0.94	0.4095	0.1147	LOCAL_INVERSION:-:+:[92583],CLASP2->chr3:33537737-33759848:-,cytoplasmic_linker_associated_protein_2,FBXL2->F-box_and_leucine-rich_repeat_protein_2,chr3:33318517-33445154:+	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.94	0.5242	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EXOC5--AP005135.2	19	9	EXOC5	13962	chr14:57696452:-	AP005135.2	30089	chr11:134931841:-	ONLY_REF_SPLICE	YES	79	0	0.26	1	0.3113	0.1474	EXOC5->chr14:57670518-57735726:-,exocyst_complex_component_5,AP005135.2->chr11:134931675-134945793:-	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.4587	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCG27--LINC00574	17	1	HCG27	1441	chr6:31165977:+	LINC00574	10024	chr6:170195280:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2785	0.0164	HGNC_GENEFAM,HCG27->HLA_complex_group_27_(non-protein_coding),chr6:31165537-31171745:+,LINC00574->chr6:170190417-170202969:+,long_intergenic_non-protein_coding_RNA_574	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2949	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf61-PLSCR3--SHBG	14	9	C17orf61-PLSCR3	6250	chr17:7293953:-	SHBG	12663	chr17:7533734:+	ONLY_REF_SPLICE	YES	44	2	0.34	0.92	0.2293	0.1474	C17orf61-PLSCR3->chr17:7293053-7307416:-,SHBG->Oncogene{Bushman},chr17:7517382-7536700:+,sex_hormone_binding_globulin	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.92	0.3767	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF214--PAFAH1B2	12	8	RNF214	6809	chr11:117117664:+	PAFAH1B2	22768	chr11:117038137:+	ONLY_REF_SPLICE	YES	69	134	0.22	0.13	0.1966	0.1311	LOCAL_REARRANGEMENT:+:[55731],RNF214->chr11:117103341-117157161:+,ring_finger_protein_214,PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.22	0.3277	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF214--PAFAH1B2	3	2	RNF214	6809	chr11:117117664:+	PAFAH1B2	29107	chr11:117046622:+	ONLY_REF_SPLICE	YES	69	3	0.07	0.62	0.0491	0.0328	LOCAL_REARRANGEMENT:+:[55731],RNF214->chr11:117103341-117157161:+,ring_finger_protein_214,PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.62	0.0819	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPLP2	3	0	EIF1	1072	chr17:39845208:+	RPLP2	8109	chr11:809971:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0491	TRUE	0	0	0	2	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERCC1--RTN2	2	1	ERCC1	3250	chr19:45952431:-	RTN2	24740	chr19:45992811:-	ONLY_REF_SPLICE	YES	4	36	0.43	0.08	0.0328	0.0164	LOCAL_REARRANGEMENT:-:[6461],ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,RTN2->chr19:45988547-46000319:-,reticulon_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.43	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPHLN1--TRERF1	2	0	PPHLN1	11329	chr12:42749024:+	TRERF1	36778	chr6:42237586:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0328	0	PPHLN1->chr12:42632249-42853517:+,periphilin_1,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0328	TRUE	0	0	0	1	0	TRUE	ACH-000806
CAOV4_OVARY	PRRC2C--RP11-16L9.4	408	117	PRRC2C	21766	chr1:171511368:+	RP11-16L9.4	47811	chr1:199010685:+	ONLY_REF_SPLICE	YES	112	0	0.82	1	3.8141	1.0938	PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C,RP11-16L9.4->chr1:198985262-199045864:+	CAOV4_OVARY	0.82	1	4.9079	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	KLK5--KLK6	356	0	KLK5	3986	chr19:51451896:-	KLK6	14361	chr19:51462572:-	ONLY_REF_SPLICE	YES	0	0	1	1	3.328	0	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[5538],KLK5->Oncogene{Bushman},chr19:51446559-51456349:-,kallikrein_related_peptidase_5,KLK6->Oncogene{Bushman},chr19:51461887-51472929:-,kallikrein_related_peptidase_6	CAOV4_OVARY	1	1	3.328	TRUE	0	0	0	2	0	TRUE	ACH-000103
CAOV4_OVARY	MRPS12--RYR1	264	110	MRPS12	1796	chr19:39421983:+	RYR1	63172	chr19:39017633:+	ONLY_REF_SPLICE	YES	325	0	0.54	1	2.468	1.0283	MRPS12->chr19:39421188-39423802:+,mitochondrial_ribosomal_protein_S12,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	CAOV4_OVARY	0.54	1	3.4963	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	RAB5C--GHDC	269	12	RAB5C	1125	chr17:40306911:-	GHDC	14189	chr17:40345868:-	ONLY_REF_SPLICE	YES	29	9	0.91	0.97	2.5147	0.1122	LOCAL_REARRANGEMENT:-:[33782],RAB5C->Oncogene{Bushman},RAB5C,_member_RAS_oncogene_family,chr17:40276994-40307035:-,GHDC->GH3_domain_containing,chr17:40340817-40346531:-	CAOV4_OVARY	0.91	0.97	2.6269	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	WNK1--CNTN4	56	18	WNK1	6601	chr12:939326:+	CNTN4	67593	chr3:3030029:+	ONLY_REF_SPLICE	YES	111	0	0.4	1	0.5235	0.1683	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4	CAOV4_OVARY	0.4	1	0.6918	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	CEP170--CASC11	49	39	CEP170	13025	chr1:243349081:-	CASC11	40556	chr8:128715488:-	ONLY_REF_SPLICE	YES	46	3	0.66	0.97	0.4581	0.3646	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CAOV4_OVARY	0.66	0.97	0.8227	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	RAB5C--GHDC	45	10	RAB5C	1125	chr17:40306911:-	GHDC	14445	chr17:40345612:-	ONLY_REF_SPLICE	YES	29	75	0.65	0.42	0.4207	0.0935	LOCAL_REARRANGEMENT:-:[33782],RAB5C->Oncogene{Bushman},RAB5C,_member_RAS_oncogene_family,chr17:40276994-40307035:-,GHDC->GH3_domain_containing,chr17:40340817-40346531:-	CAOV4_OVARY	0.42	0.65	0.5142	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	RP11-321N4.5--MTO1	42	18	RP11-321N4.5	2343	chr6:86322550:-	MTO1	16687	chr6:74189455:+	ONLY_REF_SPLICE	YES	0	21	1	0.74	0.3926	0.1683	RP11-321N4.5->chr6:86267696-86324952:-,MTO1->chr6:74171301-74218959:+,mitochondrial_tRNA_translation_optimization_1	CAOV4_OVARY	0.74	1	0.5609	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	KANK2--RGL3	23	12	KANK2	13554	chr19:11280553:-	RGL3	34336	chr19:11495320:-	ONLY_REF_SPLICE	YES	35	34	0.5	0.51	0.215	0.1122	KANK2->KN_motif_and_ankyrin_repeat_domains_2,chr19:11274943-11308467:-,RGL3->chr19:11495017-11530018:-,ral_guanine_nucleotide_dissociation_stimulator_like_3	CAOV4_OVARY	0.5	0.51	0.3272	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	MRPS12--RYR1	3	81	MRPS12	1796	chr19:39421983:+	RYR1	63826	chr19:39018287:+	ONLY_REF_SPLICE	YES	325	1	0.21	0.99	0.028	0.7572	MRPS12->chr19:39421188-39423802:+,mitochondrial_ribosomal_protein_S12,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	CAOV4_OVARY	0.21	0.99	0.7852	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	CEP170--CASC11	20	11	CEP170	12545	chr1:243349561:-	CASC11	40556	chr8:128715488:-	ONLY_REF_SPLICE	YES	151	3	0.17	0.91	0.187	0.1028	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CAOV4_OVARY	0.17	0.91	0.2898	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	BAGE2--CTBP2P1	18	9	BAGE2	5645	chr21:11058161:-	CTBP2P1	23085	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1683	0.0841	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	CAOV4_OVARY	1	1	0.2524	TRUE	0	0	0	6	0	TRUE	ACH-000103
CAOV4_OVARY	CEP170--CASC11	8	39	CEP170	13025	chr1:243349081:-	CASC11	39334	chr8:128728414:-	ONLY_REF_SPLICE	YES	46	0	0.51	1	0.0748	0.3646	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CAOV4_OVARY	0.51	1	0.4394	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	CEP170--CASC11	5	39	CEP170	13025	chr1:243349081:-	CASC11	39354	chr8:128728394:-	INCL_NON_REF_SPLICE	YES	46	0	0.49	1	0.0467	0.3646	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CAOV4_OVARY	0.49	1	0.4113	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	CEP170--CASC11	5	39	CEP170	13025	chr1:243349081:-	CASC11	39330	chr8:128728418:-	INCL_NON_REF_SPLICE	YES	46	0	0.49	1	0.0467	0.3646	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CAOV4_OVARY	0.49	1	0.4113	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	PRUNE--NBPF18P	10	2	PRUNE	2527	chr1:150990380:+	NBPF18P	14603	chr1:151971184:+	ONLY_REF_SPLICE	YES	105	0	0.1	1	0.0935	0.0187	PRUNE->chr1:150980896-151008189:+,prune_exopolyphosphatase,NBPF18P->chr1:151967007-152015250:+,neuroblastoma_breakpoint_family_member_18,_pseudogene	CAOV4_OVARY	0.1	1	0.1122	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	FAM117B--BMPR2	8	2	FAM117B	1611	chr2:203500511:+	BMPR2	29244	chr2:203407034:+	ONLY_REF_SPLICE	YES	15	50	0.4	0.17	0.0748	0.0187	LOCAL_REARRANGEMENT:+:[67427],FAM117B->chr2:203499901-203634480:+,family_with_sequence_similarity_117_member_B,BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+	CAOV4_OVARY	0.17	0.4	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	PGM2--C4orf19	6	7	PGM2	13574	chr4:37857362:+	C4orf19	22309	chr4:37590468:+	ONLY_REF_SPLICE	YES	62	13	0.17	0.5	0.0561	0.0654	PGM2->chr4:37828255-37864558:+,phosphoglucomutase_2,C4orf19->chr4:37455563-37625117:+,chromosome_4_open_reading_frame_19	CAOV4_OVARY	0.17	0.5	0.1215	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	KCNQ3--LRRC6	7	1	KCNQ3	1807	chr8:133492394:-	LRRC6	42225	chr8:133622507:-	ONLY_REF_SPLICE	YES	1	8	0.89	0.5	0.0654	0.0093	LOCAL_REARRANGEMENT:-:[91120],KCNQ3->chr8:133133108-133493200:-,potassium_voltage-gated_channel_subfamily_Q_member_3,LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6	CAOV4_OVARY	0.5	0.89	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	WNK1--CNTN4	6	5	WNK1	6601	chr12:939326:+	CNTN4	70359	chr3:3067786:+	ONLY_REF_SPLICE	YES	111	5	0.09	0.69	0.0561	0.0467	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4	CAOV4_OVARY	0.09	0.69	0.1028	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	BBX--RP11-446H18.5	5	5	BBX	4463	chr3:107245245:+	RP11-446H18.5	45780	chr3:107101023:-	INCL_NON_REF_SPLICE	YES	22	0	0.31	1	0.0467	0.0467	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,RP11-446H18.5->chr3:106991458-107101007:-	CAOV4_OVARY	0.31	1	0.0934	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	PRRC2C--RP11-16L9.4	3	7	PRRC2C	21766	chr1:171511368:+	RP11-16L9.4	48928	chr1:199045653:+	ONLY_REF_SPLICE	YES	112	9	0.08	0.53	0.028	0.0654	PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C,RP11-16L9.4->chr1:198985262-199045864:+	CAOV4_OVARY	0.08	0.53	0.0934	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	CEP170--CASC11	4	1	CEP170	9827	chr1:243362362:-	CASC11	40556	chr8:128715488:-	ONLY_REF_SPLICE	YES	135	3	0.04	0.62	0.0374	0.0093	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CAOV4_OVARY	0.04	0.62	0.0467	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	BBX--LINC00882	3	2	BBX	4463	chr3:107245245:+	LINC00882	46995	chr3:106848839:-	ONLY_REF_SPLICE	YES	22	2	0.19	0.71	0.028	0.0187	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,LINC00882->chr3:106555658-106959488:-,long_intergenic_non-protein_coding_RNA_882	CAOV4_OVARY	0.19	0.71	0.0467	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	PRUNE--NBPF18P	2	2	PRUNE	3292	chr1:150991145:+	NBPF18P	14603	chr1:151971184:+	ONLY_REF_SPLICE	YES	101	0	0.04	1	0.0187	0.0187	PRUNE->chr1:150980896-151008189:+,prune_exopolyphosphatase,NBPF18P->chr1:151967007-152015250:+,neuroblastoma_breakpoint_family_member_18,_pseudogene	CAOV4_OVARY	0.04	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	BBX--RP11-446H18.5	2	1	BBX	4463	chr3:107245245:+	RP11-446H18.5	58464	chr3:106991607:-	ONLY_REF_SPLICE	YES	22	0	0.12	1	0.0187	0.0093	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,RP11-446H18.5->chr3:106991458-107101007:-	CAOV4_OVARY	0.12	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	BMPR1B--PDLIM5	2	0	BMPR1B	1101	chr4:95679219:+	PDLIM5	46461	chr4:95539155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_FI:{Muscle=[count:3=pct:1.3]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:+:[89742],BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+,PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+	CAOV4_OVARY	1	1	0.0187	TRUE	0	1	0	2	1	TRUE	ACH-000103
CAOV4_OVARY	BMPR1B--PDLIM5	2	0	BMPR1B	1101	chr4:95679219:+	PDLIM5	39649	chr4:95506716:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_FI:{Muscle=[count:3=pct:1.3]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:+:[89742],BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+,PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+	CAOV4_OVARY	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	EXOG--NEURL4	2	0	EXOG	5038	chr3:38541655:+	NEURL4	23245	chr17:7228299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	EXOG->chr3:38537618-38583652:+,endo/exonuclease_(5'-3'),_endonuclease_G-like,NEURL4->chr17:7218947-7232712:-,neuralized_E3_ubiquitin_protein_ligase_4	CAOV4_OVARY	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	PKP3--C1orf159	2	0	PKP3	10497	chr11:404323:+	C1orf159	17245	chr1:1041429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	PKP3->chr11:392614-404908:+,plakophilin_3,C1orf159->chr1:1017198-1051741:-,chromosome_1_open_reading_frame_159	CAOV4_OVARY	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	PPP1R16B--RALGAPB	2	0	PPP1R16B	2439	chr20:37464818:+	RALGAPB	21631	chr20:37117046:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	PPP1R16B->Oncogene{Bushman},chr20:37434348-37551667:+,protein_phosphatase_1_regulatory_subunit_16B,RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+	CAOV4_OVARY	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	OBSCN--ARF1	1	3	OBSCN	24742	chr1:228462145:+	ARF1	104543	chr1:228284779:+	ONLY_REF_SPLICE	YES	16	21	0.2	0.16	0.0093	0.028	OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF,ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+	CAOV4_OVARY	0.16	0.2	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000103
SKNAS_AUTONOMIC_GANGLIA	ABCB7--ZDHHC15	16	8	ABCB7	2709	chrX:74334589:-	ZDHHC15	33033	chrX:74599033:-	ONLY_REF_SPLICE	YES	32	7	0.43	0.77	0.1523	0.0761	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Brain_-_Caudate_(basal_ganglia)=1},ABCB7->ATP_binding_cassette_subfamily_B_member_7,chrX:74273115-74376567:-,ZDHHC15->chrX:74588262-74743337:-,zinc_finger_DHHC-type_containing_15	SKNAS_AUTONOMIC_GANGLIA	0.43	0.77	0.2284	TRUE	0	0	0	1	0	TRUE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	ARMC4P1--RP11-748L13.2	14	0	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1332	0	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	SKNAS_AUTONOMIC_GANGLIA	1	1	0.1332	TRUE	1	34	11	8	34	TRUE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	DOCK1--RRP15	2	0	DOCK1	28364	chr10:128926028:+	RRP15	66172	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	SKNAS_AUTONOMIC_GANGLIA	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	PTPN3--TDRD7	2	0	PTPN3	23014	chr9:112166728:-	TDRD7	54768	chr9:100240721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	PTPN3->chr9:112137746-112260590:-,protein_tyrosine_phosphatase,_non-receptor_type_3,TDRD7->chr9:100174232-100258407:+,tudor_domain_containing_7	SKNAS_AUTONOMIC_GANGLIA	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	ZNF804A--EEF1D	2	0	ZNF804A	1705	chr2:185463797:+	EEF1D	22817	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	ZNF804A->chr2:185463093-185804219:+,zinc_finger_protein_804A,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SKNAS_AUTONOMIC_GANGLIA	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	NRG1--NRG1-IT1	1	3	NRG1	2344	chr8:31498245:+	NRG1-IT1	30006	chr8:31886895:+	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0095	0.0286	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	SKNAS_AUTONOMIC_GANGLIA	0.29	1	0.0381	TRUE	1	0	0	3	0	TRUE	ACH-000260
HS578T_BREAST	ITGAV--CNTN5	21	5	ITGAV	3767	chr2:187466878:+	CNTN5	39392	chr11:99426876:+	ONLY_REF_SPLICE	YES	196	0	0.12	1	0.2568	0.0611	ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V,CNTN5->chr11:98891683-100229616:+,contactin_5	HS578T_BREAST	0.12	1	0.3179	TRUE	0	0	0	1	0	TRUE	ACH-000148
HS578T_BREAST	RPS6KB1--VMP1	8	4	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	20	115	0.38	0.09	0.0978	0.0489	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HS578T_BREAST	0.09	0.38	0.1467	TRUE	0	8	0	9	5	TRUE	ACH-000148
HS578T_BREAST	ADAM23--PARD3B	7	2	ADAM23	3837	chr2:207346032:+	PARD3B	67904	chr2:206480180:+	ONLY_REF_SPLICE	YES	23	3	0.28	0.75	0.0856	0.0245	ADAM23->ADAM_metallopeptidase_domain_23,Oncogene{Bushman},chr2:207308263-207485851:+,PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta	HS578T_BREAST	0.28	0.75	0.1101	TRUE	0	0	0	2	0	TRUE	ACH-000148
HS578T_BREAST	AC016629.8--GPR98	4	4	AC016629.8	1281	chr19:59070776:+	GPR98	64979	chr5:90020649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0489	0.0489	AC016629.8->chr19:59070496-59086164:+,GPR98->chr5:89825161-90460038:+	HS578T_BREAST	1	1	0.0978	TRUE	0	0	0	1	0	TRUE	ACH-000148
HS578T_BREAST	COL1A2--PTMA	4	0	COL1A2	14602	chr7:94041987:+	PTMA	37657	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HS578T_BREAST	1	1	0.0489	TRUE	0	0	0	9	0	TRUE	ACH-000148
HS578T_BREAST	ENO1--SPARC	4	0	ENO1	11888	chr1:8922981:-	SPARC	26019	chr5:151047141:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS578T_BREAST	1	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000148
HS578T_BREAST	MGST1--UBB	4	0	MGST1	5873	chr12:16507204:+	UBB	25603	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0489	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,UBB->chr17:16284112-16286059:+,ubiquitin_B	HS578T_BREAST	1	1	0.0489	TRUE	0	0	0	2	0	TRUE	ACH-000148
HS578T_BREAST	VIM--CYR61	4	0	VIM	2193	chr10:17271450:+	CYR61	12322	chr1:86046561:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,VIM->chr10:17270258-17279592:+,vimentin,CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61	HS578T_BREAST	1	1	0.0489	TRUE	0	0	0	2	0	TRUE	ACH-000148
HS578T_BREAST	VIM--TPM2	4	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS578T_BREAST	1	1	0.0489	TRUE	0	0	0	8	0	TRUE	ACH-000148
HS578T_BREAST	MRPS31P5--TPTE2P2	3	1	MRPS31P5	7597	chr13:52754717:-	TPTE2P2	23110	chr13:52890534:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0367	0.0122	LOCAL_REARRANGEMENT:-:[24879],MRPS31P5->chr13:52741844-52768600:-,mitochondrial_ribosomal_protein_S31_pseudogene_5,TPTE2P2->chr13:52793479-52908412:-,transmembrane_phosphoinositide_3-phosphatase_and_tensin_homolog_2_pseudogene_2	HS578T_BREAST	0.67	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000148
HS578T_BREAST	TPM2--VIM	3	0	TPM2	2195	chr9:35689823:-	VIM	11821	chr10:17271414:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	GTEx&tcga_normals:35/3694=0.95%,GTEx:0.79%,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),VIM->chr10:17270258-17279592:+,vimentin	HS578T_BREAST	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000148
HS578T_BREAST	VIM--CYR61	3	0	VIM	2081	chr10:17271338:+	CYR61	12321	chr1:86046560:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,VIM->chr10:17270258-17279592:+,vimentin,CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61	HS578T_BREAST	1	1	0.0367	TRUE	0	0	0	2	0	TRUE	ACH-000148
HS578T_BREAST	KIF26B--SMYD3	1	1	KIF26B	2699	chr1:245319985:+	SMYD3	55692	chr1:246093239:-	ONLY_REF_SPLICE	NO	9	52	0.18	0.04	0.0122	0.0122	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	HS578T_BREAST	0.04	0.18	0.0244	TRUE	0	18	0	6	12	TRUE	ACH-000148
NCIH1437_LUNG	ASPH--EIF4EBP1	182	132	ASPH	27900	chr8:62531537:-	EIF4EBP1	51290	chr8:37914599:+	ONLY_REF_SPLICE	YES	573	1116	0.35	0.22	2.3885	1.7323	{Klijn_CCL:Lung=1},ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,EIF4EBP1->Oncogene{Bushman},chr8:37887859-37917883:+,eukaryotic_translation_initiation_factor_4E_binding_protein_1	NCIH1437_LUNG	0.22	0.35	4.1208	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	SIL1--MZB1	167	89	SIL1	6800	chr5:138532130:-	MZB1	29749	chr5:138725575:-	INCL_NON_REF_SPLICE	YES	18	5	0.93	0.98	2.1916	1.168	LOCAL_REARRANGEMENT:-:[93923],SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,MZB1->chr5:138723169-138725770:-,marginal_zone_B_and_B1_cell_specific_protein	NCIH1437_LUNG	0.93	0.98	3.3596	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	ERGIC2--CHRNA6	63	25	ERGIC2	7282	chr12:29519810:-	CHRNA6	25799	chr8:42620347:-	ONLY_REF_SPLICE	YES	72	0	0.55	1	0.8268	0.3281	ERGIC2->ERGIC_and_golgi_2,chr12:29490285-29534122:-,CHRNA6->cholinergic_receptor_nicotinic_alpha_6_subunit,chr8:42607763-42651535:-	NCIH1437_LUNG	0.55	1	1.1549	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	HEXDC--SLC16A3	20	13	HEXDC	14006	chr17:80399765:+	SLC16A3	27741	chr17:80196578:+	ONLY_REF_SPLICE	YES	53	851	0.38	0.04	0.2625	0.1706	{Klijn_CCL:Lung=1},HEXDC->chr17:80376194-80400521:+,hexosaminidase_D,SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3	NCIH1437_LUNG	0.04	0.38	0.4331	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	RP5-1033H22.2--RP11-183M13.1	16	9	RP5-1033H22.2	2387	chr1:94060006:+	RP11-183M13.1	12171	chr1:78715868:+	ONLY_REF_SPLICE	YES	11	0	0.69	1	0.21	0.1181	RP5-1033H22.2->chr1:94057756-94071130:+,RP11-183M13.1->chr1:78695283-78835149:+	NCIH1437_LUNG	0.69	1	0.3281	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	BID--MICAL3	15	1	BID	1390	chr22:18257147:-	MICAL3	70306	chr22:18274067:-	ONLY_REF_SPLICE	YES	20	24	0.44	0.4	0.1969	0.0131	LOCAL_REARRANGEMENT:-:[12879],BID->BH3_interacting_domain_death_agonist,Oncogene{Bushman},chr22:18216906-18257536:-,MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3	NCIH1437_LUNG	0.4	0.44	0.21	TRUE	0	2	0	1	1	TRUE	ACH-000589
NCIH1437_LUNG	THSD4--LRRC49	12	2	THSD4	7149	chr15:71549054:+	LRRC49	65823	chr15:71341748:+	ONLY_REF_SPLICE	YES	15	6	0.48	0.7	0.1575	0.0262	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:6],{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[46877],THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,LRRC49->chr15:71145578-71342414:+,leucine_rich_repeat_containing_49	NCIH1437_LUNG	0.48	0.7	0.1837	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	KIAA0947--MARCH11	10	5	KIAA0947	19928	chr5:5466615:+	MARCH11	33453	chr5:16091190:-	ONLY_REF_SPLICE	YES	16	0	0.48	1	0.1312	0.0656	{Klijn_CCL:Lung=1},KIAA0947->chr5:5420777-5490347:+,MARCH11->chr5:16067248-16180871:-,membrane_associated_ring-CH-type_finger_11	NCIH1437_LUNG	0.48	1	0.1968	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	ZDHHC11B--CEP72	7	5	ZDHHC11B	11667	chr5:730549:-	CEP72	19828	chr5:619105:+	ONLY_REF_SPLICE	YES	6	5	0.67	0.71	0.0919	0.0656	LOCAL_INVERSION:-:+:[43192],ZDHHC11B->chr5:710475-767067:-,zinc_finger_DHHC-type_containing_11B,CEP72->centrosomal_protein_72,chr5:612387-667283:+	NCIH1437_LUNG	0.67	0.71	0.1575	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	GPR132--JAG2	7	2	GPR132	7466	chr14:105517915:-	JAG2	27722	chr14:105607586:-	INCL_NON_REF_SPLICE	YES	2	9	0.82	0.5	0.0919	0.0262	LOCAL_REARRANGEMENT:-:[75536],GPR132->G_protein-coupled_receptor_132,chr14:105515728-105531782:-,JAG2->Oncogene{Bushman},chr14:105607318-105635161:-,jagged_2	NCIH1437_LUNG	0.5	0.82	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	RP5-1033H22.2--PTGFR	5	1	RP5-1033H22.2	2387	chr1:94060006:+	PTGFR	12088	chr1:78864636:+	ONLY_REF_SPLICE	YES	11	0	0.35	1	0.0656	0.0131	RP5-1033H22.2->chr1:94057756-94071130:+,PTGFR->chr1:78769568-79005434:+,prostaglandin_F_receptor	NCIH1437_LUNG	0.35	1	0.0787	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	SNAPC3--ADAMTSL1	4	5	SNAPC3	5811	chr9:15447242:+	ADAMTSL1	31410	chr9:18680310:+	ONLY_REF_SPLICE	YES	22	0	0.29	1	0.0525	0.0656	{Klijn_CCL:Lung=1},SNAPC3->Oncogene{Bushman},chr9:15422702-15465951:+,small_nuclear_RNA_activating_complex_polypeptide_3,ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+	NCIH1437_LUNG	0.29	1	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	DENND5B-AS1--RP11-771K4.1	4	3	DENND5B-AS1	1197	chr12:31743053:+	RP11-771K4.1	9862	chr12:31516729:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0525	0.0394	DENND5B-AS1->DENND5B_antisense_RNA_1,chr12:31742857-31768600:+,RP11-771K4.1->chr12:31516415-31522235:-	NCIH1437_LUNG	1	1	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	RP5-1033H22.2--RP11-183M13.1	3	3	RP5-1033H22.2	2387	chr1:94060006:+	RP11-183M13.1	13481	chr1:78717178:+	ONLY_REF_SPLICE	YES	11	8	0.35	0.43	0.0394	0.0394	RP5-1033H22.2->chr1:94057756-94071130:+,RP11-183M13.1->chr1:78695283-78835149:+	NCIH1437_LUNG	0.35	0.43	0.0788	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	SNAPC3--ADAMTSL1	3	1	SNAPC3	5811	chr9:15447242:+	ADAMTSL1	32910	chr9:18681810:+	ONLY_REF_SPLICE	YES	22	1	0.15	0.8	0.0394	0.0131	{Klijn_CCL:Lung=1},SNAPC3->Oncogene{Bushman},chr9:15422702-15465951:+,small_nuclear_RNA_activating_complex_polypeptide_3,ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+	NCIH1437_LUNG	0.15	0.8	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	ADAMTSL1--BNC2	2	4	ADAMTSL1	18438	chr9:18721663:+	BNC2	49232	chr9:16738483:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0.0525	ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+,BNC2->basonuclin_2,chr9:16409501-16870841:-	NCIH1437_LUNG	1	1	0.0787	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	CTD-2127H9.1--C9	3	0	CTD-2127H9.1	1162	chr5:38845770:-	C9	13660	chr5:39342298:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	CTD-2127H9.1->chr5:38736157-38845931:-,C9->chr5:39284364-39424970:-,complement_component_9	NCIH1437_LUNG	1	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	FTL--S100P	3	0	FTL	1153	chr19:49468710:+	S100P	6393	chr4:6695610:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,S100P->Oncogene{Bushman},S100_calcium_binding_protein_P,chr4:6694796-6698897:+	NCIH1437_LUNG	1	1	0.0394	TRUE	0	0	0	2	0	TRUE	ACH-000589
NCIH1437_LUNG	NDUFB8--CIZ1	3	0	NDUFB8	1621	chr10:102289137:-	CIZ1	21414	chr9:130943078:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	NDUFB8->NADH:ubiquinone_oxidoreductase_subunit_B8,chr10:102265385-102289638:-,chr10:102267203-102289757:-,CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-	NCIH1437_LUNG	1	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	RP5-1033H22.2--RP11-183M13.1	2	2	RP5-1033H22.2	2387	chr1:94060006:+	RP11-183M13.1	14865	chr1:78758164:+	ONLY_REF_SPLICE	YES	11	3	0.27	0.57	0.0262	0.0262	RP5-1033H22.2->chr1:94057756-94071130:+,RP11-183M13.1->chr1:78695283-78835149:+	NCIH1437_LUNG	0.27	0.57	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	FAIM2--PCNT	2	1	FAIM2	11184	chr12:50281169:-	PCNT	36791	chr21:47801609:+	ONLY_REF_SPLICE	YES	9	10	0.25	0.23	0.0262	0.0131	{Klijn_CCL:Lung=1},FAIM2->Fas_apoptotic_inhibitory_molecule_2,chr12:50260679-50298000:-,PCNT->chr21:47744036-47865682:+,pericentrin	NCIH1437_LUNG	0.23	0.25	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	ARHGEF4--FAM168B	2	0	ARHGEF4	8732	chr2:131704208:+	FAM168B	27640	chr2:131829511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_INVERSION:+:-:[613],ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+,FAM168B->chr2:131805449-131851033:-,family_with_sequence_similarity_168_member_B	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	CDCA4--KLC1	2	0	CDCA4	1150	chr14:105487336:-	KLC1	9921	chr14:104120901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CDCA4->cell_division_cycle_associated_4,chr14:105475910-105487485:-,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	CHD4--KDM1A	2	0	CHD4	6573	chr12:6708939:-	KDM1A	40712	chr1:23397718:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CHD4->ArcherDX_panel,FoundationOne_panel,chr12:6679249-6716642:-,chromodomain_helicase_DNA_binding_protein_4,KDM1A->chr1:23345941-23410182:+,lysine_demethylase_1A	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	CNPY2--GPI	2	0	CNPY2	2486	chr12:56708635:-	GPI	25792	chr19:34890112:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CNPY2->canopy_FGF_signaling_regulator_2,chr12:56703626-56710120:-,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	CYP24A1--DAP3	2	0	CYP24A1	10936	chr20:52773708:-	DAP3	31914	chr1:155708400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NCIH1437_LUNG	1	1	0.0262	TRUE	0	1	0	3	0	TRUE	ACH-000589
NCIH1437_LUNG	EIF2AK3--VRK2	2	0	EIF2AK3	3924	chr2:88913242:-	VRK2	41041	chr2:58316766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3,VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	FAM96A--BUB1	2	0	FAM96A	3657	chr15:64380886:-	BUB1	33571	chr2:111399811:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A,BUB1->BUB1_mitotic_checkpoint_serine/threonine_kinase,Oncogene{Bushman},chr2:111395275-111435691:-	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	KIAA0947--MARCH11	1	4	KIAA0947	19928	chr5:5466615:+	MARCH11	34648	chr5:16067902:-	ONLY_REF_SPLICE	YES	16	2	0.24	0.71	0.0131	0.0525	{Klijn_CCL:Lung=1},KIAA0947->chr5:5420777-5490347:+,MARCH11->chr5:16067248-16180871:-,membrane_associated_ring-CH-type_finger_11	NCIH1437_LUNG	0.24	0.71	0.0656	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	PPP1R16A--MAL2	2	0	PPP1R16A	1714	chr8:145704065:+	MAL2	18289	chr8:120233827:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,MAL2->chr8:120177273-120257913:+,mal,_T-cell_differentiation_protein_2_(gene/pseudogene)	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	UBAP2L--RFX5	2	0	UBAP2L	8814	chr1:154209612:+	RFX5	35165	chr1:151317664:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like,RFX5->Oncogene{Bushman},chr1:151313116-151319833:-,regulatory_factor_X5	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	UBE2Q2P1--PDE8A	2	0	UBE2Q2P1	5959	chr15:85098197:-	PDE8A	32705	chr15:85656608:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	UBE2Q2P1->chr15:85070012-85114447:-,ubiquitin_conjugating_enzyme_E2_Q2_pseudogene_1,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	ZNF410--PPP2R5E	2	0	ZNF410	1299	chr14:74353618:+	PPP2R5E	28048	chr14:63920603:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	ZNF410->chr14:74353320-74399214:+,zinc_finger_protein_410,PPP2R5E->chr14:63838075-64010092:-,protein_phosphatase_2_regulatory_subunit_B',_epsilon	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	CATSPERB--FBLN5	1	1	CATSPERB	17967	chr14:92136158:-	FBLN5	46823	chr14:92361416:-	ONLY_REF_SPLICE	YES	36	1	0.05	0.67	0.0131	0.0131	LOCAL_REARRANGEMENT:-:[88705],CATSPERB->cation_channel_sperm_associated_auxiliary_subunit_beta,chr14:92047040-92247051:-,FBLN5->chr14:92335756-92414331:-,fibulin_5	NCIH1437_LUNG	0.05	0.67	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
DAOY_CENTRAL_NERVOUS_SYSTEM	PCGF2--PIP4K2B	62	48	PCGF2	7190	chr17:36894606:-	PIP4K2B	16483	chr17:36943173:-	ONLY_REF_SPLICE	YES	155	93	0.42	0.54	0.7505	0.581	LOCAL_REARRANGEMENT:-:[15872],PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta	DAOY_CENTRAL_NERVOUS_SYSTEM	0.42	0.54	1.3315	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RPS6KB1--VMP1	26	52	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	57	869	0.58	0.08	0.3147	0.6294	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.08	0.58	0.9441	TRUE	0	9	0	11	6	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	EP400--PGAM5	19	15	EP400	18317	chr12:132496179:+	PGAM5	55793	chr12:133291444:+	ONLY_REF_SPLICE	YES	65	4	0.34	0.89	0.23	0.1816	EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.34	0.89	0.4116	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RPS6KB1--VMP1	5	56	RPS6KB1	1839	chr17:57971285:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	68	869	0.47	0.07	0.0605	0.6779	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.07	0.47	0.7384	TRUE	0	9	0	11	6	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RPS6KB1--VMP1	1	52	RPS6KB1	1240	chr17:57970686:+	VMP1	38445	chr17:57911373:+	ONLY_REF_SPLICE	NO	57	356	0.48	0.13	0.0121	0.6294	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.13	0.48	0.6415	TRUE	0	3	0	1	3	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	ABR--SLC43A2	10	5	ABR	22312	chr17:970317:-	SLC43A2	55413	chr17:1489345:-	ONLY_REF_SPLICE	YES	236	80	0.06	0.16	0.121	0.0605	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,SLC43A2->chr17:1472561-1532180:-,solute_carrier_family_43_member_2	DAOY_CENTRAL_NERVOUS_SYSTEM	0.06	0.16	0.1815	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SPAG7--B3GNTL1	8	2	SPAG7	1153	chr17:4871015:-	B3GNTL1	18665	chr17:80923622:-	ONLY_REF_SPLICE	YES	29	20	0.26	0.33	0.0968	0.0242	SPAG7->chr17:4862521-4871167:-,sperm_associated_antigen_7,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	DAOY_CENTRAL_NERVOUS_SYSTEM	0.26	0.33	0.121	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	EP400--PGAM5	6	9	EP400	17180	chr12:132491422:+	PGAM5	55793	chr12:133291444:+	ONLY_REF_SPLICE	YES	107	4	0.12	0.79	0.0726	0.1089	EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.12	0.79	0.1815	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	NLGN1--PEX5L-AS1	6	5	NLGN1	8770	chr3:173322881:+	PEX5L-AS1	28909	chr3:179598676:+	ONLY_REF_SPLICE	YES	11	0	0.5	1	0.0726	0.0605	NLGN1->chr3:173114074-174004434:+,neuroligin_1,PEX5L-AS1->PEX5L_antisense_RNA_1,chr3:179593164-179599397:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.1331	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	DMXL2--CYP19A1	5	7	DMXL2	46755	chr15:51745747:-	CYP19A1	66003	chr15:51535147:-	ONLY_REF_SPLICE	YES	100	5	0.11	0.71	0.0605	0.0847	DMXL2->Dmx_like_2,chr15:51739908-51915030:-,CYP19A1->Oncogene{Bushman},chr15:51500254-51630807:-,cytochrome_P450_family_19_subfamily_A_member_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.11	0.71	0.1452	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	EHHADH--PEX5L	4	9	EHHADH	8389	chr3:184944616:-	PEX5L	38929	chr3:179519820:-	ONLY_REF_SPLICE	YES	24	0	0.35	1	0.0484	0.1089	EHHADH->chr3:184908412-184999778:-,enoyl-CoA,_hydratase/3-hydroxyacyl_CoA_dehydrogenase,PEX5L->chr3:179512746-179754841:-,peroxisomal_biogenesis_factor_5-like	DAOY_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.1573	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	B3GNTL1--SERPINF1	4	8	B3GNTL1	14863	chr17:80914571:-	SERPINF1	27275	chr17:1670197:+	ONLY_REF_SPLICE	YES	15	0	0.44	1	0.0484	0.0968	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,SERPINF1->chr17:1665253-1680868:+,serpin_family_F_member_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.1452	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	CAAP1--SET	5	4	CAAP1	1392	chr9:26892411:-	SET	13371	chr9:131446059:+	ONLY_REF_SPLICE	YES	46	2	0.16	0.82	0.0605	0.0484	CAAP1->caspase_activity_and_apoptosis_inhibitor_1,chr9:26840683-26892802:-,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.16	0.82	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	DOCK2--GABRP	5	4	DOCK2	53428	chr5:169484670:+	GABRP	73183	chr5:170215578:+	ONLY_REF_SPLICE	YES	18	0	0.33	1	0.0605	0.0484	DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2,GABRP->chr5:170190354-170241051:+,gamma-aminobutyric_acid_type_A_receptor_pi_subunit	DAOY_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SH3GL3--EP300	5	2	SH3GL3	1351	chr15:84116330:+	EP300	22569	chr22:41513191:+	ONLY_REF_SPLICE	YES	0	51	1	0.12	0.0605	0.0242	SH3GL3->SH3_domain_containing_GRB2_like_3,chr15:84115980-84287495:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0847	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP11-114H21.2--CTB-1I21.1	1	16	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	14	0	0.55	1	0.0121	0.1937	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.55	1	0.2058	TRUE	0	2	0	12	2	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	EHHADH--PEX5L	2	9	EHHADH	7358	chr3:184947220:-	PEX5L	38929	chr3:179519820:-	ONLY_REF_SPLICE	YES	24	0	0.31	1	0.0242	0.1089	EHHADH->chr3:184908412-184999778:-,enoyl-CoA,_hydratase/3-hydroxyacyl_CoA_dehydrogenase,PEX5L->chr3:179512746-179754841:-,peroxisomal_biogenesis_factor_5-like	DAOY_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.1331	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	DMXL2--CYP19A1	1	10	DMXL2	46755	chr15:51745747:-	CYP19A1	62618	chr15:51570359:-	ONLY_REF_SPLICE	NO	100	0	0.1	1	0.0121	0.121	DMXL2->Dmx_like_2,chr15:51739908-51915030:-,CYP19A1->Oncogene{Bushman},chr15:51500254-51630807:-,cytochrome_P450_family_19_subfamily_A_member_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.1331	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	EP300--RP11-326A19.4	3	1	EP300	8747	chr22:41527637:+	RP11-326A19.4	43170	chr15:89625722:+	ONLY_REF_SPLICE	YES	78	0	0.05	1	0.0363	0.0121	EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+,RP11-326A19.4->chr15:89584454-89626050:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SPAG7--B3GNTL1	3	1	SPAG7	1153	chr17:4871015:-	B3GNTL1	19912	chr17:80919057:-	ONLY_REF_SPLICE	YES	29	16	0.12	0.2	0.0363	0.0121	SPAG7->chr17:4862521-4871167:-,sperm_associated_antigen_7,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	DAOY_CENTRAL_NERVOUS_SYSTEM	0.12	0.2	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	CEBPD--ACTN4	3	0	CEBPD	2639	chr8:48650010:-	ACTN4	16625	chr19:39207724:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	CEBPD->CCAAT/enhancer_binding_protein_delta,chr8:48649471-48651648:-,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	PRR4--RP11-337A23.6	3	0	PRR4	4819	chr12:11187381:-	RP11-337A23.6	24489	chr9:26801884:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),RP11-337A23.6->chr9:26801731-26805860:+	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RERE--ENO1	3	0	RERE	1484	chr1:8877219:-	ENO1	42962	chr1:8934976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:-:[43359],RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0363	TRUE	0	6	0	2	3	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	DMXL2--CYP19A1	1	7	DMXL2	46755	chr15:51745747:-	CYP19A1	64645	chr15:51547958:-	ONLY_REF_SPLICE	NO	100	2	0.07	0.8	0.0121	0.0847	DMXL2->Dmx_like_2,chr15:51739908-51915030:-,CYP19A1->Oncogene{Bushman},chr15:51500254-51630807:-,cytochrome_P450_family_19_subfamily_A_member_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.07	0.8	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	DMXL2--CYP19A1	1	7	DMXL2	46755	chr15:51745747:-	CYP19A1	64698	chr15:51547905:-	ONLY_REF_SPLICE	YES	100	2	0.07	0.8	0.0121	0.0847	DMXL2->Dmx_like_2,chr15:51739908-51915030:-,CYP19A1->Oncogene{Bushman},chr15:51500254-51630807:-,cytochrome_P450_family_19_subfamily_A_member_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.07	0.8	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	NLGN1--PEX5L-AS1	1	5	NLGN1	9272	chr3:173323383:+	PEX5L-AS1	28909	chr3:179598676:+	ONLY_REF_SPLICE	YES	11	0	0.35	1	0.0121	0.0605	NLGN1->chr3:173114074-174004434:+,neuroligin_1,PEX5L-AS1->PEX5L_antisense_RNA_1,chr3:179593164-179599397:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.0726	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	ATP5J2--EEF1D	2	0	ATP5J2	1203	chr7:99063752:-	EEF1D	20407	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ATP5J2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F2,chr7:99046098-99063954:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	CAAP1--SET	1	4	CAAP1	1546	chr9:26892257:-	SET	13371	chr9:131446059:+	ONLY_REF_SPLICE	YES	36	2	0.12	0.71	0.0121	0.0484	CAAP1->caspase_activity_and_apoptosis_inhibitor_1,chr9:26840683-26892802:-,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.12	0.71	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	CDH13--DNM3OS	2	0	CDH13	19777	chr16:83251102:+	DNM3OS	36657	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	1	0	7	1	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	FKBP14--TBC1D32	2	0	FKBP14	2525	chr7:30062281:-	TBC1D32	38727	chr6:121491673:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	FKBP14->FK506_binding_protein_14,chr7:30050203-30066300:-,TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	HINT1--TIA1	2	0	HINT1	3661	chr5:130498265:-	TIA1	18610	chr2:70443631:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	HINT1->chr5:130494720-130507428:-,histidine_triad_nucleotide_binding_protein_1,TIA1->TIA1_cytotoxic_granule-associated_RNA_binding_protein,chr2:70436576-70475792:-	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	IL13RA2--UNC45A	2	0	IL13RA2	11128	chrX:114239760:-	UNC45A	23391	chr15:91485667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	IL13RA2->chrX:114238538-114254540:-,interleukin_13_receptor_subunit_alpha_2,UNC45A->chr15:91473410-91497323:+,unc-45_myosin_chaperone_A	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	KHDRBS3--EIF3H	2	0	KHDRBS3	1498	chr8:136470197:+	EIF3H	32991	chr8:117671219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	KHDRBS3->KH_domain_containing,_RNA_binding,_signal_transduction_associated_3,chr8:136469700-136668965:+,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	LIN28B--HSF2	2	0	LIN28B	3424	chr6:105474357:+	HSF2	13629	chr6:122733518:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	LIN28B->chr6:105404923-105531207:+,lin-28_homolog_B,HSF2->chr6:122720691-122754264:+,heat_shock_transcription_factor_2	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	POLR2E--POLR2A	2	0	POLR2E	2696	chr19:1093903:-	POLR2A	18736	chr17:7403958:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	HGNC_GENEFAM,POLR2E->chr19:1086594-1095598:-,polymerase_(RNA)_II_subunit_E,POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	PRR4--RP11-337A23.6	2	0	PRR4	4819	chr12:11187381:-	RP11-337A23.6	25664	chr9:26805818:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),RP11-337A23.6->chr9:26801731-26805860:+	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RERE--ENO1	2	0	RERE	2669	chr1:8852463:-	ENO1	42962	chr1:8934976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_REARRANGEMENT:-:[43359],RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	2	0	2	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SLC35E3--NUP107	2	0	SLC35E3	1674	chr12:69140559:+	NUP107	24558	chr12:69103018:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[3101],SLC35E3->chr12:69139886-69187508:+,solute_carrier_family_35_member_E3,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SMIM14--LIMCH1	2	0	SMIM14	1352	chr4:39640359:-	LIMCH1	42690	chr4:41646517:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14,LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SSU72--ATAD3A	2	0	SSU72	1392	chr1:1509858:-	ATAD3A	26989	chr1:1469306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_INVERSION:-:+:[6986],SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-,ATAD3A->ATPase_family,_AAA_domain_containing_3A,chr1:1447531-1470067:+	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	1	0	0	2	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	EHHADH--PEX5L	1	3	EHHADH	6246	chr3:184953078:-	PEX5L	38929	chr3:179519820:-	ONLY_REF_SPLICE	YES	25	0	0.14	1	0.0121	0.0363	EHHADH->chr3:184908412-184999778:-,enoyl-CoA,_hydratase/3-hydroxyacyl_CoA_dehydrogenase,PEX5L->chr3:179512746-179754841:-,peroxisomal_biogenesis_factor_5-like	DAOY_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SERPINF1--ZNF385C	1	2	SERPINF1	6159	chr17:1674478:+	ZNF385C	14584	chr17:40215076:-	ONLY_REF_SPLICE	NO	3	0	0.5	1	0.0121	0.0242	SERPINF1->chr17:1665253-1680868:+,serpin_family_F_member_1,ZNF385C->chr17:40177594-40217383:-,zinc_finger_protein_385C	DAOY_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000211
SNU387_LIVER	C11orf30--RP11-18A15.1	65	19	C11orf30	3415	chr11:76163001:+	RP11-18A15.1	37522	chr9:26748214:+	ONLY_REF_SPLICE	YES	33	0	0.72	1	0.8404	0.2457	C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,RP11-18A15.1->chr9:26746951-26786872:+	SNU387_LIVER	0.72	1	1.0861	TRUE	0	0	0	1	0	TRUE	ACH-000478
SNU387_LIVER	ZNF771--MYLPF	7	5	ZNF771	1898	chr16:30419515:+	MYLPF	14310	chr16:30386143:+	ONLY_REF_SPLICE	YES	6	0	0.67	1	0.0905	0.0646	LOCAL_REARRANGEMENT:+:[29306],ZNF771->chr16:30418618-30440920:+,zinc_finger_protein_771,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	SNU387_LIVER	0.67	1	0.1551	TRUE	0	0	0	1	0	TRUE	ACH-000478
SNU387_LIVER	C11orf30--RP11-18A15.1	3	1	C11orf30	3415	chr11:76163001:+	RP11-18A15.1	38619	chr9:26786784:+	ONLY_REF_SPLICE	YES	33	0	0.11	1	0.0388	0.0129	C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,RP11-18A15.1->chr9:26746951-26786872:+	SNU387_LIVER	0.11	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000478
SNU387_LIVER	ZNF771--MYLPF	2	5	ZNF771	1898	chr16:30419515:+	MYLPF	13126	chr16:30384199:+	ONLY_REF_SPLICE	YES	6	0	0.54	1	0.0259	0.0646	LOCAL_REARRANGEMENT:+:[29306],ZNF771->chr16:30418618-30440920:+,zinc_finger_protein_771,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	SNU387_LIVER	0.54	1	0.0905	TRUE	0	0	0	1	0	TRUE	ACH-000478
SNU387_LIVER	ARHGEF7--ARGLU1	2	0	ARHGEF7	4362	chr13:111806338:+	ARGLU1	44466	chr13:107212005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,ARGLU1->arginine_and_glutamate_rich_1,chr13:107194021-107220512:-	SNU387_LIVER	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000478
SNU387_LIVER	VDAC1--CTD-2410N18.5	2	0	VDAC1	1487	chr5:133340338:-	CTD-2410N18.5	16152	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,CTD-2410N18.5->chr5:133502861-133561762:-	SNU387_LIVER	1	1	0.0259	TRUE	0	0	0	6	0	TRUE	ACH-000478
CCK81_LARGE_INTESTINE	DMTN--NPM2	57	72	DMTN	15669	chr8:21937972:+	NPM2	23406	chr8:21890634:+	INCL_NON_REF_SPLICE	YES	120	21	0.52	0.86	0.6996	0.8837	LOCAL_REARRANGEMENT:+:[12098],DMTN->chr8:21906506-21940038:+,dematin_actin_binding_protein,NPM2->chr8:21881636-21894408:+,nucleophosmin/nucleoplasmin_2	CCK81_LARGE_INTESTINE	0.52	0.86	1.5833	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	DMTN--NPM2	2	68	DMTN	15668	chr8:21937971:+	NPM2	23413	chr8:21890641:+	ONLY_REF_SPLICE	YES	119	20	0.37	0.78	0.0245	0.8346	LOCAL_REARRANGEMENT:+:[12098],DMTN->chr8:21906506-21940038:+,dematin_actin_binding_protein,NPM2->chr8:21881636-21894408:+,nucleophosmin/nucleoplasmin_2	CCK81_LARGE_INTESTINE	0.37	0.78	0.8591	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	NUMA1--RP11-807H22.7	14	11	NUMA1	3816	chr11:71780888:-	RP11-807H22.7	44213	chr11:71874423:-	ONLY_REF_SPLICE	YES	160	1	0.14	0.96	0.1718	0.135	LOCAL_REARRANGEMENT:-:[82627],NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,RP11-807H22.7->chr11:71874366-71920285:-	CCK81_LARGE_INTESTINE	0.14	0.96	0.3068	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	SLC12A2--EIF5A	10	0	SLC12A2	1511	chr5:127419968:+	EIF5A	38672	chr17:7211006:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1227	0	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A	CCK81_LARGE_INTESTINE	1	1	0.1227	TRUE	0	0	0	2	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	DMTN--NPM2	1	35	DMTN	14387	chr8:21931346:+	NPM2	23413	chr8:21890641:+	ONLY_REF_SPLICE	YES	133	20	0.21	0.64	0.0123	0.4296	LOCAL_REARRANGEMENT:+:[12098],DMTN->chr8:21906506-21940038:+,dematin_actin_binding_protein,NPM2->chr8:21881636-21894408:+,nucleophosmin/nucleoplasmin_2	CCK81_LARGE_INTESTINE	0.21	0.64	0.4419	TRUE	0	1	0	1	1	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	MAP2K4--PAGE5	4	10	MAP2K4	5591	chr17:11973166:+	PAGE5	23735	chrX:55247808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0491	0.1227	MAP2K4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:11924141-12047147:+,mitogen-activated_protein_kinase_kinase_4,PAGE5->PAGE_family_member_5,chrX:55246788-55250541:+	CCK81_LARGE_INTESTINE	1	1	0.1718	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	NUMA1--RP11-807H22.7	1	21	NUMA1	5329	chr11:71779151:-	RP11-807H22.7	42989	chr11:71909780:-	ONLY_REF_SPLICE	NO	178	0	0.11	1	0.0123	0.2578	LOCAL_REARRANGEMENT:-:[82627],NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,RP11-807H22.7->chr11:71874366-71920285:-	CCK81_LARGE_INTESTINE	0.11	1	0.2701	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	MAP2K4--PAGE5	3	8	MAP2K4	4398	chr17:11958308:+	PAGE5	23735	chrX:55247808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0.0982	MAP2K4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:11924141-12047147:+,mitogen-activated_protein_kinase_kinase_4,PAGE5->PAGE_family_member_5,chrX:55246788-55250541:+	CCK81_LARGE_INTESTINE	1	1	0.135	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	NUMA1--RP11-807H22.7	1	12	NUMA1	5329	chr11:71779151:-	RP11-807H22.7	44213	chr11:71874423:-	ONLY_REF_SPLICE	YES	178	1	0.07	0.93	0.0123	0.1473	LOCAL_REARRANGEMENT:-:[82627],NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,RP11-807H22.7->chr11:71874366-71920285:-	CCK81_LARGE_INTESTINE	0.07	0.93	0.1596	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	SLC12A2--EIF5A	3	0	SLC12A2	1749	chr5:127420206:+	EIF5A	38654	chr17:7210988:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A	CCK81_LARGE_INTESTINE	1	1	0.0368	TRUE	0	0	0	2	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	C21orf33--ZBTB7A	2	0	C21orf33	5159	chr21:45560224:+	ZBTB7A	14811	chr19:4055245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	C21orf33->chr21:45553487-45565605:+,chromosome_21_open_reading_frame_33,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	CCK81_LARGE_INTESTINE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	ENTHD1--ANO3	2	0	ENTHD1	8024	chr22:40161228:-	ANO3	34671	chr11:26619912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	ENTHD1->ENTH_domain_containing_1,chr22:40139049-40289868:-,ANO3->anoctamin_3,chr11:26210829-26684835:+	CCK81_LARGE_INTESTINE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	SDCBP2-AS1--ARIH1	2	0	SDCBP2-AS1	1125	chr20:1306173:+	ARIH1	15748	chr15:72789132:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	SDCBP2-AS1->SDCBP2_antisense_RNA_1,chr20:1306049-1359378:+,ARIH1->ariadne_RBR_E3_ubiquitin_protein_ligase_1,chr15:72766667-72879692:+	CCK81_LARGE_INTESTINE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	AC097721.2--SPOPL	1	1	AC097721.2	1944	chr2:139258325:-	SPOPL	12071	chr2:139307727:+	ONLY_REF_SPLICE	YES	0	54	1	0.04	0.0123	0.0123	LOCAL_INVERSION:-:+:[103],AC097721.2->chr2:139175854-139259268:-,SPOPL->chr2:139259371-139331117:+,speckle_type_BTB/POZ_protein_like	CCK81_LARGE_INTESTINE	0.04	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	ATXN7--THOC7	1	1	ATXN7	3640	chr3:63884173:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	NO	1	15	0.67	0.12	0.0123	0.0123	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	CCK81_LARGE_INTESTINE	0.12	0.67	0.0246	TRUE	0	2	0	5	2	TRUE	ACH-000963
BFTC909_KIDNEY	COL1A1--FN1	714	47	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	2115	8338	0.26	0.08	6.3855	0.4203	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0.08	0.26	6.8058	TRUE	0	0	0	17	0	TRUE	ACH-000792
BFTC909_KIDNEY	ARHGEF11--ETV3L	14	2	ARHGEF11	2072	chr1:157014091:-	ETV3L	42272	chr1:157067780:-	ONLY_REF_SPLICE	YES	15	0	0.52	1	0.1252	0.0179	LOCAL_REARRANGEMENT:-:[46674],ARHGEF11->Rho_guanine_nucleotide_exchange_factor_11,chr1:156904632-157015162:-,ETV3L->ETS_variant_3_like,chr1:157061836-157069600:-	BFTC909_KIDNEY	0.52	1	0.1431	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	COL1A1--FN1	12	0	COL1A1	2656	chr17:48277119:-	FN1	48839	chr2:216256517:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1073	0	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	1	1	0.1073	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	KIFC3--CNGB1	9	4	KIFC3	7286	chr16:57828911:-	CNGB1	50654	chr16:57965782:-	ONLY_REF_SPLICE	YES	56	0	0.19	1	0.0805	0.0358	{Klijn_CCL:Kidney=1},LOCAL_REARRANGEMENT:-:[20546],KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3,CNGB1->chr16:57917503-58005020:-,cyclic_nucleotide_gated_channel_beta_1	BFTC909_KIDNEY	0.19	1	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	CLTC--RPS6KB1	8	3	CLTC	1316	chr17:57697534:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	135	9	0.08	0.55	0.0715	0.0268	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	BFTC909_KIDNEY	0.08	0.55	0.0983	TRUE	0	1	0	5	0	TRUE	ACH-000792
BFTC909_KIDNEY	VIM-AS1--FN1	3	0	VIM-AS1	1128	chr10:17271857:-	FN1	9944	chr2:216300746:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	1	1	0.0268	TRUE	0	0	0	2	0	TRUE	ACH-000792
BFTC909_KIDNEY	VIM-AS1--FN1	3	0	VIM-AS1	1119	chr10:17271866:-	FN1	9934	chr2:216300756:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	1	1	0.0268	TRUE	0	0	0	2	0	TRUE	ACH-000792
BFTC909_KIDNEY	C3orf52--ARHGEF26-AS1	2	2	C3orf52	2341	chr3:111812336:+	ARHGEF26-AS1	25017	chr3:153748168:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0179	0.0179	C3orf52->chr3:111805182-111849851:+,chromosome_3_open_reading_frame_52,ARHGEF26-AS1->ARHGEF26_antisense_RNA_1,chr3:153742190-153839121:-	BFTC909_KIDNEY	0.19	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	AP000275.65--MED16	2	0	AP000275.65	5536	chr21:33975471:-	MED16	21910	chr19:875454:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	AP000275.65->chr21:33951132-33984591:-,MED16->chr19:867962-893218:-,mediator_complex_subunit_16	BFTC909_KIDNEY	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	BMPR1B--RAP1GDS1	2	0	BMPR1B	1101	chr4:95679219:+	RAP1GDS1	27637	chr4:99264290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+,RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+	BFTC909_KIDNEY	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	CLTC--RPS6KB1	2	0	CLTC	1316	chr17:57697534:+	RPS6KB1	46421	chr17:58007478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	BFTC909_KIDNEY	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	ARHGEF11--ETV3L	1	2	ARHGEF11	2072	chr1:157014091:-	ETV3L	43393	chr1:157062919:-	ONLY_REF_SPLICE	NO	15	0	0.17	1	0.0089	0.0179	LOCAL_REARRANGEMENT:-:[46674],ARHGEF11->Rho_guanine_nucleotide_exchange_factor_11,chr1:156904632-157015162:-,ETV3L->ETS_variant_3_like,chr1:157061836-157069600:-	BFTC909_KIDNEY	0.17	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	C3orf52--ARHGEF26-AS1	1	2	C3orf52	2341	chr3:111812336:+	ARHGEF26-AS1	25020	chr3:153748165:-	ONLY_REF_SPLICE	YES	17	0	0.15	1	0.0089	0.0179	C3orf52->chr3:111805182-111849851:+,chromosome_3_open_reading_frame_52,ARHGEF26-AS1->ARHGEF26_antisense_RNA_1,chr3:153742190-153839121:-	BFTC909_KIDNEY	0.15	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000792
TUHR4TKB_KIDNEY	CLPTM1L--RP11-43F13.1	9	2	CLPTM1L	6927	chr5:1334404:-	RP11-43F13.1	27096	chr5:1627041:-	ONLY_REF_SPLICE	YES	10	3	0.52	0.79	0.2096	0.0466	CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-,RP11-43F13.1->chr5:1599035-1634120:-	TUHR4TKB_KIDNEY	0.52	0.79	0.2562	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	APOLD1--ADD1	3	0	APOLD1	13580	chr12:12975654:+	ADD1	30170	chr4:2883721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,ADD1->adducin_1,chr4:2845584-2931803:+	TUHR4TKB_KIDNEY	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	PBXIP1--TSSC4	3	0	PBXIP1	5819	chr1:154919894:-	TSSC4	15092	chr11:2424648:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1,TSSC4->chr11:2421718-2425106:+,tumor_suppressing_subtransferable_candidate_4	TUHR4TKB_KIDNEY	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	PLAUR--SDC1	3	0	PLAUR	11657	chr19:44153064:-	SDC1	23681	chr2:20401132:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	HGNC_GENEFAM,PLAUR->Oncogene{Bushman},chr19:44150247-44174699:-,plasminogen_activator,_urokinase_receptor,SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	TUHR4TKB_KIDNEY	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	SLC16A3--ACTR2	3	0	SLC16A3	10135	chr17:80195734:+	ACTR2	16702	chr2:65454994:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,ACTR2->ARP2_actin-related_protein_2_homolog_(yeast),chr2:65454887-65498387:+	TUHR4TKB_KIDNEY	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	ST6GALNAC2--STX4	3	0	ST6GALNAC2	15580	chr17:74559949:-	STX4	20132	chr16:31045604:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	ST6GALNAC2->ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_2,chr17:74559792-74583038:-,STX4->Oncogene{Bushman},chr16:31044210-31054296:+,syntaxin_4	TUHR4TKB_KIDNEY	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	CEP112--TRAM1	2	0	CEP112	2540	chr17:64179312:-	TRAM1	52467	chr8:71499411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,TRAM1->chr8:71485677-71520622:-,translocation_associated_membrane_protein_1	TUHR4TKB_KIDNEY	1	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	GAS6--TFDP1	2	0	GAS6	1499	chr13:114566548:-	TFDP1	22838	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_Transformed_fibroblasts=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	TUHR4TKB_KIDNEY	1	1	0.0466	TRUE	0	1	0	5	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	KPNA6--KHDRBS1	2	0	KPNA6	1097	chr1:32573735:+	KHDRBS1	25219	chr1:32495899:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},LOCAL_REARRANGEMENT:+:[47188],KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6,KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+	TUHR4TKB_KIDNEY	1	1	0.0466	TRUE	0	0	0	2	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	OPA3--ZCCHC10	2	0	OPA3	2338	chr19:46087881:-	ZCCHC10	21452	chr5:132342612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	OPA3->chr19:46030685-46105470:-,optic_atrophy_3_(autosomal_recessive,_with_chorea_and_spastic_paraplegia),ZCCHC10->chr5:132332677-132362296:-,zinc_finger_CCHC-type_containing_10	TUHR4TKB_KIDNEY	1	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	OSMR--KDM3B	2	0	OSMR	2616	chr5:38869219:+	KDM3B	42138	chr5:137750821:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	OSMR->chr5:38845960-38945698:+,oncostatin_M_receptor,KDM3B->chr5:137688285-137772717:+,lysine_demethylase_3B	TUHR4TKB_KIDNEY	1	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	TGFB2--CYFIP1	2	0	TGFB2	4061	chr1:218578674:+	CYFIP1	48045	chr15:23002876:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	TGFB2->Oncogene{Bushman},chr1:218519577-218617961:+,transforming_growth_factor_beta_2,CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1	TUHR4TKB_KIDNEY	1	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000495
SF268_CENTRAL_NERVOUS_SYSTEM	PPP4R1--ANKRD20A19P	141	41	PPP4R1	2015	chr18:9614224:-	ANKRD20A19P	31697	chr13:24515879:-	ONLY_REF_SPLICE	YES	67	0	0.73	1	1.324	0.385	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,ANKRD20A19P->ankyrin_repeat_domain_20_family_member_A19,_pseudogene,chr13:24513696-24520921:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.73	1	1.709	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--PRR16	55	60	MIR155HG	2434	chr21:26942233:+	PRR16	12376	chr5:119952790:+	ONLY_REF_SPLICE	YES	3	0	0.97	1	0.5165	0.5634	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,PRR16->chr5:119799973-120023027:+,proline_rich_16	SF268_CENTRAL_NERVOUS_SYSTEM	0.97	1	1.0799	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	BTBD7--RP11-371E8.4	61	22	BTBD7	1273	chr14:93799166:-	RP11-371E8.4	30216	chr14:93676170:+	ONLY_REF_SPLICE	YES	1	2	0.99	0.98	0.5728	0.2066	LOCAL_INVERSION:-:+:[18964],BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-,RP11-371E8.4->chr14:93651318-93684932:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.98	0.99	0.7794	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--PRR16	38	41	MIR155HG	1349	chr21:26934569:+	PRR16	12376	chr5:119952790:+	ONLY_REF_SPLICE	YES	3	0	0.96	1	0.3568	0.385	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,PRR16->chr5:119799973-120023027:+,proline_rich_16	SF268_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.7418	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--PRR16	36	21	MIR155HG	1349	chr21:26934569:+	PRR16	14598	chr5:120021649:+	ONLY_REF_SPLICE	YES	3	6	0.95	0.9	0.338	0.1972	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,PRR16->chr5:119799973-120023027:+,proline_rich_16	SF268_CENTRAL_NERVOUS_SYSTEM	0.9	0.95	0.5352	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CALM3--MYL6	36	0	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.338	0	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.338	TRUE	0	0	0	8	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	TUBB--SERPINE1	36	0	TUBB	3372	chr6:30690359:+	SERPINE1	14122	chr7:100777024:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.338	0	TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.338	TRUE	0	0	0	2	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	DDX10--KIAA1377	26	16	DDX10	23828	chr11:108788745:+	KIAA1377	48595	chr11:101863509:+	ONLY_REF_SPLICE	YES	516	31	0.08	0.58	0.2441	0.1502	DDX10->DEAD-box_helicase_10,Oncogene{Bushman},chr11:108535752-108811657:+,KIAA1377->chr11:101785746-101871789:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.08	0.58	0.3943	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDC25C--CTC-228N24.3	25	18	CDC25C	6690	chr5:137661504:-	CTC-228N24.3	23322	chr5:127359990:-	ONLY_REF_SPLICE	YES	33	32	0.57	0.57	0.2348	0.169	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,CTC-228N24.3->chr5:127276118-127418864:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.57	0.57	0.4038	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	EPHB2--LYPLA2	27	0	EPHB2	1205	chr1:23037536:+	LYPLA2	28307	chr1:24119147:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2535	0	{Klijn_CCL:Brain=1},EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+,LYPLA2->chr1:24117460-24122029:+,lysophospholipase_II	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.2535	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	TEAD1--ABCC8	24	10	TEAD1	14839	chr11:12923660:+	ABCC8	35820	chr11:17474830:-	ONLY_REF_SPLICE	YES	113	0	0.23	1	0.2254	0.0939	{Klijn_CCL:Brain=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,ABCC8->ATP_binding_cassette_subfamily_C_member_8,chr11:17414432-17498449:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.3193	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--PRR16	18	31	MIR155HG	2434	chr21:26942233:+	PRR16	14598	chr5:120021649:+	ONLY_REF_SPLICE	YES	3	6	0.94	0.89	0.169	0.2911	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,PRR16->chr5:119799973-120023027:+,proline_rich_16	SF268_CENTRAL_NERVOUS_SYSTEM	0.89	0.94	0.4601	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	G2E3--BPHL	17	8	G2E3	12402	chr14:31062845:+	BPHL	36379	chr6:3137596:+	ONLY_REF_SPLICE	YES	7	21	0.78	0.54	0.1596	0.0751	G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+,BPHL->biphenyl_hydrolase-like_(serine_hydrolase),chr6:3118608-3153812:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.54	0.78	0.2347	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--PRR16	4	58	MIR155HG	2434	chr21:26942233:+	PRR16	12379	chr5:119952793:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0376	0.5446	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,PRR16->chr5:119799973-120023027:+,proline_rich_16	SF268_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.5822	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PDHX--TTC17	16	7	PDHX	1987	chr11:34938362:+	TTC17	48299	chr11:43511789:+	ONLY_REF_SPLICE	YES	82	30	0.22	0.43	0.1502	0.0657	PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,TTC17->chr11:43380482-43516483:+,tetratricopeptide_repeat_domain_17	SF268_CENTRAL_NERVOUS_SYSTEM	0.22	0.43	0.2159	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-334E6.12--MT2A	8	18	RP11-334E6.12	2059	chr11:119289719:+	MT2A	5573	chr16:56642519:+	INCL_NON_REF_SPLICE	YES	454	0	0.05	1	0.0751	0.169	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SF268_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.2441	TRUE	0	0	0	7	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDC25C--CTC-228N24.3	9	12	CDC25C	5450	chr5:137664173:-	CTC-228N24.3	23322	chr5:127359990:-	ONLY_REF_SPLICE	YES	32	32	0.4	0.4	0.0845	0.1127	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,CTC-228N24.3->chr5:127276118-127418864:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.4	0.4	0.1972	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PAX6--MUC2	10	6	PAX6	11229	chr11:31823419:-	MUC2	29803	chr11:1079658:+	ONLY_REF_SPLICE	YES	90	0	0.15	1	0.0939	0.0563	PAX6->Oncogene{Bushman},chr11:31806340-31839509:-,paired_box_6,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	SF268_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.1502	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--PRR16	2	37	MIR155HG	2434	chr21:26942233:+	PRR16	13474	chr5:119954137:+	ONLY_REF_SPLICE	YES	3	4	0.93	0.91	0.0188	0.3474	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,PRR16->chr5:119799973-120023027:+,proline_rich_16	SF268_CENTRAL_NERVOUS_SYSTEM	0.91	0.93	0.3662	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PPP4R1--ANKRD20A19P	9	6	PPP4R1	1763	chr18:9614476:-	ANKRD20A19P	31697	chr13:24515879:-	ONLY_REF_SPLICE	YES	19	0	0.44	1	0.0845	0.0563	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,ANKRD20A19P->ankyrin_repeat_domain_20_family_member_A19,_pseudogene,chr13:24513696-24520921:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.1408	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	8	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0751	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0751	TRUE	0	0	0	15	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	DYNC2H1--RP11-196E1.3	6	0	DYNC2H1	84560	chr11:103194718:+	RP11-196E1.3	98728	chr11:119507635:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0563	0	DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,RP11-196E1.3->chr11:119479135-119529994:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0563	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	DYNC2H1--CNTN5	5	2	DYNC2H1	89274	chr11:103326023:+	CNTN5	97740	chr11:98920321:+	ONLY_REF_SPLICE	YES	38	4	0.16	0.64	0.047	0.0188	{Klijn_CCL:Brain=1},DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,CNTN5->chr11:98891683-100229616:+,contactin_5	SF268_CENTRAL_NERVOUS_SYSTEM	0.16	0.64	0.0658	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	HIPK3--ARNTL	5	2	HIPK3	6242	chr11:33350179:+	ARNTL	28781	chr11:13371492:+	ONLY_REF_SPLICE	YES	19	3	0.27	0.7	0.047	0.0188	HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3,ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.27	0.7	0.0658	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	TEAD1--ABCC8	3	10	TEAD1	14839	chr11:12923660:+	ABCC8	33482	chr11:17483372:-	ONLY_REF_SPLICE	YES	113	0	0.1	1	0.0282	0.0939	{Klijn_CCL:Brain=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,ABCC8->ATP_binding_cassette_subfamily_C_member_8,chr11:17414432-17498449:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.1221	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	5	0	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.047	TRUE	0	0	0	15	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDC25C--CTC-228N24.3	3	7	CDC25C	6690	chr5:137661504:-	CTC-228N24.3	29553	chr5:127302620:-	ONLY_REF_SPLICE	YES	33	23	0.23	0.3	0.0282	0.0657	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,CTC-228N24.3->chr5:127276118-127418864:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.23	0.3	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDC25C--CTC-228N24.3	3	7	CDC25C	5450	chr5:137664173:-	CTC-228N24.3	29553	chr5:127302620:-	ONLY_REF_SPLICE	YES	32	23	0.24	0.3	0.0282	0.0657	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,CTC-228N24.3->chr5:127276118-127418864:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.24	0.3	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	BTBD7--RP11-371E8.4	4	2	BTBD7	1273	chr14:93799166:-	RP11-371E8.4	33197	chr14:93681275:+	ONLY_REF_SPLICE	YES	1	110	0.86	0.05	0.0376	0.0188	LOCAL_INVERSION:-:+:[18964],BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-,RP11-371E8.4->chr14:93651318-93684932:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.05	0.86	0.0564	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDC25C--CTC-228N24.3	1	14	CDC25C	6484	chr5:137661710:-	CTC-228N24.3	23322	chr5:127359990:-	ONLY_REF_SPLICE	YES	33	32	0.31	0.32	0.0094	0.1315	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,CTC-228N24.3->chr5:127276118-127418864:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.31	0.32	0.1409	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--IFLTD1	4	2	RP11-444D3.1	1258	chr12:24715267:-	IFLTD1	18522	chr12:25702480:-	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0376	0.0188	RP11-444D3.1->chr12:24366190-24715524:-,IFLTD1->chr12:25562241-25801513:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.0564	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PAX6--MUC2	3	5	PAX6	10396	chr11:31824252:-	MUC2	29803	chr11:1079658:+	ONLY_REF_SPLICE	YES	85	0	0.09	1	0.0282	0.047	PAX6->Oncogene{Bushman},chr11:31806340-31839509:-,paired_box_6,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	SF268_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	BTBD7--RP11-371E8.4	2	8	BTBD7	1273	chr14:93799166:-	RP11-371E8.4	31040	chr14:93676994:+	ONLY_REF_SPLICE	YES	1	54	0.91	0.16	0.0188	0.0751	LOCAL_INVERSION:-:+:[18964],BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-,RP11-371E8.4->chr14:93651318-93684932:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.16	0.91	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	ARNTL--RCN1	3	1	ARNTL	3346	chr11:13331606:+	RCN1	30941	chr11:31906840:+	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0282	0.0094	ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+,RCN1->chr11:31833939-32127301:+,reticulocalbin_1	SF268_CENTRAL_NERVOUS_SYSTEM	0.57	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	ARNTL--USP47	3	1	ARNTL	3346	chr11:13331606:+	USP47	30380	chr11:11895347:+	ONLY_REF_SPLICE	YES	3	67	0.57	0.06	0.0282	0.0094	ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	SF268_CENTRAL_NERVOUS_SYSTEM	0.06	0.57	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PDHX--TTC17	3	1	PDHX	1110	chr11:34937485:+	TTC17	48299	chr11:43511789:+	ONLY_REF_SPLICE	YES	1	30	0.8	0.12	0.0282	0.0094	PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,TTC17->chr11:43380482-43516483:+,tetratricopeptide_repeat_domain_17	SF268_CENTRAL_NERVOUS_SYSTEM	0.12	0.8	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CBL--MMP1	3	0	CBL	1571	chr11:119077322:+	MMP1	27733	chr11:102668231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	CBL->ArcherDX_panel,Cbl_proto-oncogene,FoundationOne_panel,Oncogene{Bushman},chr11:119076752-119178859:+,MMP1->chr11:102660651-102668891:-,matrix_metallopeptidase_1	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	COL1A1--PTMA	3	0	COL1A1	6093	chr17:48273682:-	PTMA	23757	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CWF19L2--C11orf63	3	0	CWF19L2	13902	chr11:107260800:-	C11orf63	31278	chr11:122795605:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	{Klijn_CCL:Brain=1},CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-,C11orf63->chr11:122753391-122830506:+,chromosome_11_open_reading_frame_63	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	GAPDH--ACTB	3	0	GAPDH	4654	chr12:6646770:+	ACTB	14989	chr7:5567080:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	GTEx&tcga_normals:6/3694=0.16%,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	THY1--PKM	3	0	THY1	5667	chr11:119291029:-	PKM	18231	chr15:72511415:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	THY1->Oncogene{Bushman},Thy-1_cell_surface_antigen,chr11:119288090-119295695:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	ARNTL--USP47	2	1	ARNTL	3346	chr11:13331606:+	USP47	32466	chr11:11901724:+	ONLY_REF_SPLICE	YES	3	55	0.5	0.05	0.0188	0.0094	ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	SF268_CENTRAL_NERVOUS_SYSTEM	0.05	0.5	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	BTBD7--RP11-371E8.4	1	5	BTBD7	1273	chr14:93799166:-	RP11-371E8.4	32101	chr14:93678378:+	ONLY_REF_SPLICE	YES	1	120	0.86	0.05	0.0094	0.047	LOCAL_INVERSION:-:+:[18964],BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-,RP11-371E8.4->chr14:93651318-93684932:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.05	0.86	0.0564	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--CTD-2334D19.1	2	1	MIR155HG	2434	chr21:26942233:+	CTD-2334D19.1	9000	chr5:120125649:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0188	0.0094	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,CTD-2334D19.1->chr5:120116913-120126473:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RELT--POLD3	2	1	RELT	1236	chr11:73087544:+	POLD3	17508	chr11:74305106:+	ONLY_REF_SPLICE	YES	0	22	1	0.12	0.0188	0.0094	RELT->RELT_tumor_necrosis_factor_receptor,chr11:73087309-73108519:+,POLD3->chr11:74204896-74380162:+,polymerase_(DNA)_delta_3,_accessory_subunit	SF268_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	ANKRD28--TBC1D5	2	0	ANKRD28	1395	chr3:15900884:-	TBC1D5	76790	chr3:17349626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	BOK--ARL6IP6	2	0	BOK	1273	chr2:242498408:+	ARL6IP6	12752	chr2:153577047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	BOK->BCL2-related_ovarian_killer,Oncogene{Bushman},chr2:242498136-242513546:+,ARL6IP6->ADP_ribosylation_factor_like_GTPase_6_interacting_protein_6,chr2:153574407-153617767:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CBL--MMP1	2	0	CBL	2819	chr11:119103405:+	MMP1	27733	chr11:102668231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	CBL->ArcherDX_panel,Cbl_proto-oncogene,FoundationOne_panel,Oncogene{Bushman},chr11:119076752-119178859:+,MMP1->chr11:102660651-102668891:-,matrix_metallopeptidase_1	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CWF19L2--C11orf63	2	0	CWF19L2	13902	chr11:107260800:-	C11orf63	34048	chr11:122817206:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	{Klijn_CCL:Brain=1},CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-,C11orf63->chr11:122753391-122830506:+,chromosome_11_open_reading_frame_63	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	DDX24--CDCA4	2	0	DDX24	2850	chr14:94545371:-	CDCA4	17742	chr14:105478272:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	DDX24->DEAD-box_helicase_24,chr14:94517266-94547591:-,CDCA4->cell_division_cycle_associated_4,chr14:105475910-105487485:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	EPS15L1--TPM4	2	0	EPS15L1	1173	chr19:16582724:-	TPM4	39957	chr19:16192723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	{Klijn_CCL:Colo-Rectal=1},EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1,TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	1	0	1	1	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	ETF1--GCAT	2	0	ETF1	1204	chr5:137878786:-	GCAT	19452	chr22:38208894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1,GCAT->chr22:38203912-38213183:+,glycine_C-acetyltransferase	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--IFLTD1	2	0	RP11-444D3.1	1253	chr12:24715272:-	IFLTD1	22458	chr12:25679152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	RP11-444D3.1->chr12:24366190-24715524:-,IFLTD1->chr12:25562241-25801513:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	1	0	1	1	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--IFLTD1	2	0	RP11-444D3.1	1253	chr12:24715272:-	IFLTD1	20540	chr12:25699488:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	RP11-444D3.1->chr12:24366190-24715524:-,IFLTD1->chr12:25562241-25801513:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	TMEM123--YAP1	2	0	TMEM123	5695	chr11:102319543:-	YAP1	19808	chr11:102056749:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	{Klijn_CCL:Head-Neck=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	2	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--IFLTD1	1	2	RP11-444D3.1	1253	chr12:24715272:-	IFLTD1	18522	chr12:25702480:-	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0094	0.0188	RP11-444D3.1->chr12:24366190-24715524:-,IFLTD1->chr12:25562241-25801513:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDC25C--CTC-228N24.3	1	1	CDC25C	5450	chr5:137664173:-	CTC-228N24.3	31594	chr5:127292613:-	ONLY_REF_SPLICE	NO	32	9	0.06	0.18	0.0094	0.0094	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,CTC-228N24.3->chr5:127276118-127418864:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.06	0.18	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	HIPK3--ARNTL	1	1	HIPK3	2218	chr11:33279435:+	ARNTL	28781	chr11:13371492:+	ONLY_REF_SPLICE	YES	14	3	0.12	0.4	0.0094	0.0094	HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3,ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.12	0.4	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PDHX--TTC17	1	1	PDHX	1658	chr11:34938033:+	TTC17	48299	chr11:43511789:+	ONLY_REF_SPLICE	NO	1	30	0.67	0.06	0.0094	0.0094	PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,TTC17->chr11:43380482-43516483:+,tetratricopeptide_repeat_domain_17	SF268_CENTRAL_NERVOUS_SYSTEM	0.06	0.67	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
NCIH747_LARGE_INTESTINE	POLR2J4--ADCY1	7	34	POLR2J4	7076	chr7:44026200:-	ADCY1	33478	chr7:45703888:+	ONLY_REF_SPLICE	YES	3	2	0.93	0.95	0.0894	0.4344	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+	NCIH747_LARGE_INTESTINE	0.93	0.95	0.5238	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	POLR2J4--ADCY1	8	8	POLR2J4	7076	chr7:44026200:-	ADCY1	34862	chr7:45717468:+	ONLY_REF_SPLICE	YES	3	1	0.84	0.94	0.1022	0.1022	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+	NCIH747_LARGE_INTESTINE	0.84	0.94	0.2044	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	POLR2J4--ADCY1	2	23	POLR2J4	5999	chr7:44027277:-	ADCY1	33478	chr7:45703888:+	ONLY_REF_SPLICE	YES	3	2	0.89	0.93	0.0256	0.2938	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+	NCIH747_LARGE_INTESTINE	0.89	0.93	0.3194	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	POLR2J4--ADCY1	3	1	POLR2J4	3385	chr7:44054205:-	ADCY1	34862	chr7:45717468:+	ONLY_REF_SPLICE	YES	75	1	0.05	0.8	0.0383	0.0128	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+	NCIH747_LARGE_INTESTINE	0.05	0.8	0.0511	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	AC084018.1--MZT2A	2	0	AC084018.1	5060	chr12:122237753:-	MZT2A	16862	chr2:132241791:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	AC084018.1->chr12:122233173-122241812:-,MZT2A->chr2:132222473-132250316:-,mitotic_spindle_organizing_protein_2A	NCIH747_LARGE_INTESTINE	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	DLG1--PARL	2	0	DLG1	5122	chr3:197009550:-	PARL	44820	chr3:183585848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component,PARL->chr3:183547173-183602721:-,presenilin_associated_rhomboid_like	NCIH747_LARGE_INTESTINE	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	ISY1--RPN1	2	0	ISY1	7632	chr3:128859211:-	RPN1	21181	chr3:128363826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	ISY1->ISY1_splicing_factor_homolog,chr3:128846258-128880136:-,RPN1->Oncogene{Bushman},chr3:128338817-128399918:-,ribophorin_I	NCIH747_LARGE_INTESTINE	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	LAMA5--FLII	2	0	LAMA5	25651	chr20:60898512:-	FLII	52673	chr17:18152722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,FLII->Oncogene{Bushman},chr17:18148150-18162230:-,flightless_I_actin_binding_protein	NCIH747_LARGE_INTESTINE	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	POLR2J4--ADCY1	1	1	POLR2J4	4398	chr7:44053192:-	ADCY1	34862	chr7:45717468:+	ONLY_REF_SPLICE	YES	53	1	0.04	0.67	0.0128	0.0128	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+	NCIH747_LARGE_INTESTINE	0.04	0.67	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH23_LUNG	BAG6--NELFE	442	238	BAG6	2050	chr6:31619433:-	NELFE	18684	chr6:31924787:-	ONLY_REF_SPLICE	YES	483	513	0.58	0.57	4.3212	2.3268	BAG6->BCL2_associated_athanogene_6,chr6:31606805-31620482:-,NELFE->chr6:31919864-31926887:-,negative_elongation_factor_complex_member_E	NCIH23_LUNG	0.57	0.58	6.648	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	THADA--MTA3	68	19	THADA	1116	chr2:43823070:-	MTA3	75860	chr2:42909541:+	ONLY_REF_SPLICE	YES	19	162	0.82	0.35	0.6648	0.1858	THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	NCIH23_LUNG	0.35	0.82	0.8506	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	DBT--VAV3	47	0	DBT	1065	chr1:100715326:-	VAV3	31570	chr1:108322114:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4595	0	DBT->chr1:100652475-100715390:-,dihydrolipoamide_branched_chain_transacylase_E2,VAV3->Oncogene{Bushman},chr1:108113782-108507766:-,vav_guanine_nucleotide_exchange_factor_3	NCIH23_LUNG	1	1	0.4595	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	CTD-2314B22.3--RP11-536C10.19	19	6	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	14	0	0.64	1	0.1858	0.0587	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	NCIH23_LUNG	0.64	1	0.2445	TRUE	0	2	0	9	2	TRUE	ACH-000900
NCIH23_LUNG	THADA--MTA3	11	28	THADA	1400	chr2:43822786:-	MTA3	75860	chr2:42909541:+	ONLY_REF_SPLICE	YES	52	162	0.43	0.19	0.1075	0.2737	THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	NCIH23_LUNG	0.19	0.43	0.3812	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	RALGAPA2--AFF3	12	3	RALGAPA2	1114	chr20:20693018:-	AFF3	66020	chr2:100453986:-	ONLY_REF_SPLICE	YES	5	15	0.75	0.5	0.1173	0.0293	RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	NCIH23_LUNG	0.5	0.75	0.1466	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	PIGU--DDX11L8	9	2	PIGU	2216	chr20:33244984:-	DDX11L8	20186	chr12:93000:-	ONLY_REF_SPLICE	YES	71	0	0.13	1	0.088	0.0196	PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,DDX11L8->DEAD/H-box_helicase_11_like_8,chr12:92239-93430:-	NCIH23_LUNG	0.13	1	0.1076	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	SCAF4--TIAM1	7	6	SCAF4	16796	chr21:33057362:-	TIAM1	25224	chr21:32836348:-	ONLY_REF_SPLICE	YES	78	2	0.14	0.87	0.0684	0.0587	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-	NCIH23_LUNG	0.14	0.87	0.1271	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	PEX7--RP3-325F22.3	6	3	PEX7	5758	chr6:137166830:+	RP3-325F22.3	17046	chr6:136958069:+	ONLY_REF_SPLICE	YES	25	0	0.26	1	0.0587	0.0293	PEX7->chr6:137143717-137235075:+,peroxisomal_biogenesis_factor_7,RP3-325F22.3->chr6:136950310-136969137:+	NCIH23_LUNG	0.26	1	0.088	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	THADA--MTA3	5	5	THADA	1116	chr2:43823070:-	MTA3	77166	chr2:42922905:+	ONLY_REF_SPLICE	YES	19	195	0.34	0.05	0.0489	0.0489	THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	NCIH23_LUNG	0.05	0.34	0.0978	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	ASB8--HECTD4	6	0	ASB8	2389	chr12:48551242:-	HECTD4	13304	chr12:112757546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0587	0	ASB8->ankyrin_repeat_and_SOCS_box_containing_8,chr12:48541571-48574996:-,HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-	NCIH23_LUNG	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	SCAF4--FSCN1	3	0	SCAF4	16796	chr21:33057362:-	FSCN1	26647	chr7:5642888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1	NCIH23_LUNG	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	PEX7--RP3-325F22.3	2	3	PEX7	3426	chr6:137147607:+	RP3-325F22.3	17046	chr6:136958069:+	ONLY_REF_SPLICE	YES	33	0	0.13	1	0.0196	0.0293	PEX7->chr6:137143717-137235075:+,peroxisomal_biogenesis_factor_7,RP3-325F22.3->chr6:136950310-136969137:+	NCIH23_LUNG	0.13	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	ATP6V1D--RP11-403I13.4	2	1	ATP6V1D	13578	chr14:67803364:-	RP11-403I13.4	25604	chr1:149250842:+	ONLY_REF_SPLICE	NO	10	2	0.23	0.6	0.0196	0.0098	ATP6V1D->ATPase_H+_transporting_V1_subunit_D,chr14:67761088-67826982:-,RP11-403I13.4->chr1:149239531-149265510:+	NCIH23_LUNG	0.23	0.6	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	AFMID--TMED2	2	0	AFMID	1117	chr17:76183514:+	TMED2	16462	chr12:124071294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	AFMID->arylformamidase,chr17:76183398-76203782:+,TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	ATP11A--CUL4A	2	0	ATP11A	34653	chr13:113530255:+	CUL4A	67191	chr13:113917801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,CUL4A->chr13:113862552-113919399:+,cullin_4A	NCIH23_LUNG	1	1	0.0196	TRUE	0	7	0	5	3	TRUE	ACH-000900
NCIH23_LUNG	BOP1--ADCK5	2	0	BOP1	2339	chr8:145512776:-	ADCK5	17942	chr8:145603076:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	LOCAL_INVERSION:-:+:[81708],BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,ADCK5->aarF_domain_containing_kinase_5,chr8:145596790-145618457:+	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	CCDC14--ZNF638	2	0	CCDC14	1574	chr3:123679991:-	ZNF638	66208	chr2:71655677:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	CUX1--PMEPA1	2	0	CUX1	1415	chr7:101459373:+	PMEPA1	64694	chr20:56234753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,PMEPA1->Oncogene{Bushman},chr20:56223448-56286592:-,prostate_transmembrane_protein,_androgen_induced_1	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	DDAH1--HP1BP3	2	0	DDAH1	5553	chr1:85961849:-	HP1BP3	30606	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	EEF1A1--ZBTB1	2	0	EEF1A1	2745	chr6:74231230:-	ZBTB1	16026	chr14:64988205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1,ZBTB1->chr14:64970430-65000408:+,zinc_finger_and_BTB_domain_containing_1	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	FAM114A1--SPRY2	2	0	FAM114A1	1870	chr4:38870167:+	SPRY2	25371	chr13:80911891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	FAM114A1->chr4:38869298-38947360:+,family_with_sequence_similarity_114_member_A1,SPRY2->chr13:80910111-80915086:-,sprouty_RTK_signaling_antagonist_2	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	FAM179B--CLTC	2	0	FAM179B	3260	chr14:45433670:+	CLTC	35142	chr17:57721637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	FAM179B->chr14:45431411-45543634:+,family_with_sequence_similarity_179_member_B,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	FUS--SETD1A	2	0	FUS	1118	chr16:31191548:+	SETD1A	15951	chr16:30970038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	HGNC_GENEFAM,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+,SETD1A->SET_domain_containing_1A,chr16:30968615-30996437:+	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	INO80B--NPM1	2	0	INO80B	2250	chr2:74683399:+	NPM1	19110	chr5:170834704:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	INO80B->INO80_complex_subunit_B,chr2:74682150-74688011:+,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	LINC00472--DNMBP	2	0	LINC00472	4804	chr6:72126113:-	DNMBP	14441	chr10:101728994:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	LINC00472->chr6:72054047-72130472:-,long_intergenic_non-protein_coding_RNA_472,DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	POLR3K--PTMS	2	0	POLR3K	1153	chr16:103476:-	PTMS	10993	chr12:6879087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	RILPL1--SFSWAP	2	0	RILPL1	2696	chr12:124008042:-	SFSWAP	24042	chr12:132212838:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	RILPL1->Rab_interacting_lysosomal_protein-like_1,chr12:123955925-124018265:-,SFSWAP->chr12:132195626-132284282:+,splicing_factor,_suppressor_of_white-apricot_homolog	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	SAMD3--ADSS	2	0	SAMD3	2422	chr6:130634123:-	ADSS	30223	chr1:244587689:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	SAMD3->chr6:130465460-130686570:-,sterile_alpha_motif_domain_containing_3,ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	SLC6A17--KIAA1407	2	0	SLC6A17	1398	chr1:110693505:+	KIAA1407	27423	chr3:113753995:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	SLC6A17->chr1:110693108-110744824:+,solute_carrier_family_6_member_17,KIAA1407->chr3:113682984-113775460:-	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	TRNT1--LRPPRC	2	0	TRNT1	9961	chr3:3186394:+	LRPPRC	23717	chr2:44202356:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	TRNT1->chr3:3168600-3192563:+,tRNA_nucleotidyl_transferase,_CCA-adding,_1,LRPPRC->chr2:44113647-44223144:-,leucine_rich_pentatricopeptide_repeat_containing	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	UNKL--UBE2I	2	0	UNKL	19748	chr16:1429534:-	UBE2I	39740	chr16:1364021:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	LOCAL_INVERSION:-:+:[36187],UNKL->chr16:1413206-1464752:-,unkempt_family_like_zinc_finger,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	2	0	TRUE	ACH-000900
NCIH23_LUNG	WDR43--PHF10	2	0	WDR43	6646	chr2:29135576:+	PHF10	27115	chr6:170121207:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+,PHF10->PHD_finger_protein_10,chr6:170104001-170124151:-	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	RALGAPA2--AFF3	1	2	RALGAPA2	1114	chr20:20693018:-	AFF3	67068	chr2:100368763:-	ONLY_REF_SPLICE	YES	5	11	0.38	0.21	0.0098	0.0196	RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	NCIH23_LUNG	0.21	0.38	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	RP11-20I20.2--CTBP1	1	2	RP11-20I20.2	1114	chr4:1107540:+	CTBP1	8481	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	28	1	0.1	0.0098	0.0196	LOCAL_INVERSION:+:-:[78471],RP11-20I20.2->chr4:1107427-1126765:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH23_LUNG	0.1	1	0.0294	TRUE	0	1	1	6	1	TRUE	ACH-000900
NCIH23_LUNG	SCAF4--TIAM1	1	2	SCAF4	16796	chr21:33057362:-	TIAM1	27419	chr21:32711737:-	ONLY_REF_SPLICE	YES	78	4	0.04	0.43	0.0098	0.0196	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-	NCIH23_LUNG	0.04	0.43	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	ATP6V1D--RP11-403I13.4	1	1	ATP6V1D	13578	chr14:67803364:-	RP11-403I13.4	25843	chr1:149251081:+	ONLY_REF_SPLICE	YES	10	2	0.17	0.5	0.0098	0.0098	ATP6V1D->ATPase_H+_transporting_V1_subunit_D,chr14:67761088-67826982:-,RP11-403I13.4->chr1:149239531-149265510:+	NCIH23_LUNG	0.17	0.5	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
JHUEM7_ENDOMETRIUM	HIF1A--RP11-47I22.3	132	81	HIF1A	4846	chr14:62187290:+	RP11-47I22.3	28952	chr14:62124323:+	ONLY_REF_SPLICE	YES	676	38	0.24	0.85	1.8076	1.1092	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	JHUEM7_ENDOMETRIUM	0.24	0.85	2.9168	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	PHLDB1--ARCN1	104	26	PHLDB1	21391	chr11:118509969:+	ARCN1	45989	chr11:118454524:+	ONLY_REF_SPLICE	YES	20	151	0.87	0.46	1.4242	0.356	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,LOCAL_REARRANGEMENT:+:[3407],PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,ARCN1->archain_1,chr11:118443105-118473748:+	JHUEM7_ENDOMETRIUM	0.46	0.87	1.7802	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	SEC14L2--UQCR10	80	13	SEC14L2	10751	chr22:30812076:+	UQCR10	19919	chr22:30165667:+	ONLY_REF_SPLICE	YES	22	300	0.81	0.24	1.0955	0.178	SEC14L2->SEC14_like_lipid_binding_2,chr22:30792846-30821305:+,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	JHUEM7_ENDOMETRIUM	0.24	0.81	1.2735	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	HIF1A--RP11-47I22.3	29	108	HIF1A	5928	chr14:62188372:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	882	66	0.13	0.67	0.3971	1.4789	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	JHUEM7_ENDOMETRIUM	0.13	0.67	1.876	TRUE	0	0	0	2	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	HIF1A--RP11-47I22.3	20	85	HIF1A	4846	chr14:62187290:+	RP11-47I22.3	28150	chr14:62123521:+	ONLY_REF_SPLICE	YES	676	32	0.13	0.77	0.2739	1.164	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	JHUEM7_ENDOMETRIUM	0.13	0.77	1.4379	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	SEC14L2--HORMAD2	32	24	SEC14L2	3862	chr22:30795707:+	HORMAD2	20765	chr22:30489905:+	ONLY_REF_SPLICE	YES	81	0	0.41	1	0.4382	0.3287	SEC14L2->SEC14_like_lipid_binding_2,chr22:30792846-30821305:+,HORMAD2->HORMA_domain_containing_2,chr22:30476163-30573064:+	JHUEM7_ENDOMETRIUM	0.41	1	0.7669	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	HIF1A--RP11-47I22.3	1	108	HIF1A	6097	chr14:62188541:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	721	66	0.13	0.62	0.0137	1.4789	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	JHUEM7_ENDOMETRIUM	0.13	0.62	1.4926	TRUE	0	0	0	2	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	HIF1A--RP11-47I22.3	1	82	HIF1A	15201	chr14:62207906:+	RP11-47I22.3	28952	chr14:62124323:+	ONLY_REF_SPLICE	YES	1228	38	0.06	0.69	0.0137	1.1229	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	JHUEM7_ENDOMETRIUM	0.06	0.69	1.1366	TRUE	0	0	0	2	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	FAM228B--UBXN2A	18	4	FAM228B	3801	chr2:24303825:+	UBXN2A	31632	chr2:24199839:+	ONLY_REF_SPLICE	YES	0	28	1	0.44	0.2465	0.0548	LOCAL_REARRANGEMENT:+:[71617],FAM228B->chr2:24299396-24392509:+,family_with_sequence_similarity_228_member_B,UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+	JHUEM7_ENDOMETRIUM	0.44	1	0.3013	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	SEC14L2--HORMAD2	13	14	SEC14L2	1314	chr22:30793159:+	HORMAD2	20765	chr22:30489905:+	ONLY_REF_SPLICE	YES	73	0	0.27	1	0.178	0.1917	SEC14L2->SEC14_like_lipid_binding_2,chr22:30792846-30821305:+,HORMAD2->HORMA_domain_containing_2,chr22:30476163-30573064:+	JHUEM7_ENDOMETRIUM	0.27	1	0.3697	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	CAPZA2--MET	15	3	CAPZA2	3371	chr7:116502704:+	MET	27625	chr7:116339125:+	ONLY_REF_SPLICE	YES	45	151	0.29	0.11	0.2054	0.0411	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	JHUEM7_ENDOMETRIUM	0.11	0.29	0.2465	TRUE	0	0	0	3	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	HIF1A--RP11-47I22.3	3	46	HIF1A	4767	chr14:62187211:+	RP11-47I22.3	28952	chr14:62124323:+	INCL_NON_REF_SPLICE	YES	740	38	0.06	0.56	0.0411	0.6299	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	JHUEM7_ENDOMETRIUM	0.06	0.56	0.671	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	CAPZA2--MET	12	3	CAPZA2	3371	chr7:116502704:+	MET	26575	chr7:116335804:+	ONLY_REF_SPLICE	YES	45	159	0.25	0.09	0.1643	0.0411	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	JHUEM7_ENDOMETRIUM	0.09	0.25	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	RP11-395P17.3--CIZ1	10	5	RP11-395P17.3	4942	chr9:130875652:-	CIZ1	21788	chr9:130932386:-	INCL_NON_REF_SPLICE	YES	7	66	0.68	0.19	0.1369	0.0685	LOCAL_REARRANGEMENT:-:[47330],RP11-395P17.3->chr9:130873450-130881013:-,CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-	JHUEM7_ENDOMETRIUM	0.19	0.68	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	RP11-395P17.3--CIZ1	6	7	RP11-395P17.3	6633	chr9:130873961:-	CIZ1	21788	chr9:130932386:-	INCL_NON_REF_SPLICE	YES	12	66	0.52	0.16	0.0822	0.0959	LOCAL_REARRANGEMENT:-:[47330],RP11-395P17.3->chr9:130873450-130881013:-,CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-	JHUEM7_ENDOMETRIUM	0.16	0.52	0.1781	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	ZHX3--CHD6	7	1	ZHX3	5816	chr20:39897630:-	CHD6	65880	chr20:40045434:-	ONLY_REF_SPLICE	YES	4	15	0.67	0.35	0.0959	0.0137	LOCAL_REARRANGEMENT:-:[84429],ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3,CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6	JHUEM7_ENDOMETRIUM	0.35	0.67	0.1096	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	TKT--DCP1A	3	6	TKT	17212	chr3:53259767:-	DCP1A	25726	chr3:53353500:-	ONLY_REF_SPLICE	NO	36	14	0.2	0.39	0.0411	0.0822	LOCAL_REARRANGEMENT:-:[27379],TKT->chr3:53258723-53290068:-,transketolase,DCP1A->chr3:53317447-53381654:-,decapping_mRNA_1A	JHUEM7_ENDOMETRIUM	0.2	0.39	0.1233	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	TKT--DCP1A	3	6	TKT	17212	chr3:53259767:-	DCP1A	24671	chr3:53372172:-	ONLY_REF_SPLICE	YES	36	16	0.2	0.36	0.0411	0.0822	LOCAL_REARRANGEMENT:-:[27379],TKT->chr3:53258723-53290068:-,transketolase,DCP1A->chr3:53317447-53381654:-,decapping_mRNA_1A	JHUEM7_ENDOMETRIUM	0.2	0.36	0.1233	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	PHLDB1--ARCN1	1	13	PHLDB1	21141	chr11:118509719:+	ARCN1	45989	chr11:118454524:+	ONLY_REF_SPLICE	NO	27	151	0.34	0.08	0.0137	0.178	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,LOCAL_REARRANGEMENT:+:[3407],PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,ARCN1->archain_1,chr11:118443105-118473748:+	JHUEM7_ENDOMETRIUM	0.08	0.34	0.1917	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	PHLDB1--ARCN1	2	4	PHLDB1	19739	chr11:118506266:+	ARCN1	45989	chr11:118454524:+	ONLY_REF_SPLICE	YES	35	151	0.15	0.04	0.0274	0.0548	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,LOCAL_REARRANGEMENT:+:[3407],PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,ARCN1->archain_1,chr11:118443105-118473748:+	JHUEM7_ENDOMETRIUM	0.04	0.15	0.0822	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	RP11-47I22.3--PRKCH	3	0	RP11-47I22.3	1221	chr14:62037478:+	PRKCH	31250	chr14:61919944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0411	0	YOSHIHARA_TCGA_num_samples[BRCA:2|KIRC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[19564],RP11-47I22.3->chr14:62037258-62125414:+,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	JHUEM7_ENDOMETRIUM	1	1	0.0411	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	PPFIBP1--SMCO2	2	1	PPFIBP1	1935	chr12:27677298:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	62	0	0.05	1	0.0274	0.0137	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	JHUEM7_ENDOMETRIUM	0.05	1	0.0411	TRUE	0	2	0	3	1	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	CREB1--SLC30A9	2	0	CREB1	1398	chr2:208394858:+	SLC30A9	37111	chr4:42065003:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	CREB1->Oncogene{Bushman},cAMP_responsive_element_binding_protein_1,chr2:208394461-208468155:+,SLC30A9->chr4:41992489-42092474:+,solute_carrier_family_30_member_9	JHUEM7_ENDOMETRIUM	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	RP11-47I22.3--PRKCH	2	0	RP11-47I22.3	1221	chr14:62037478:+	PRKCH	37424	chr14:61952220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	YOSHIHARA_TCGA_num_samples[BRCA:2|KIRC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[19564],RP11-47I22.3->chr14:62037258-62125414:+,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	JHUEM7_ENDOMETRIUM	1	1	0.0274	TRUE	0	2	0	2	2	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	TAF12--TRNAU1AP	2	0	TAF12	4846	chr1:28944465:-	TRNAU1AP	19658	chr1:28893806:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_INVERSION:-:+:[10784],TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-,TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1	JHUEM7_ENDOMETRIUM	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	TKT--DCP1A	1	3	TKT	17212	chr3:53259767:-	DCP1A	26793	chr3:53346409:-	ONLY_REF_SPLICE	NO	36	16	0.1	0.2	0.0137	0.0411	LOCAL_REARRANGEMENT:-:[27379],TKT->chr3:53258723-53290068:-,transketolase,DCP1A->chr3:53317447-53381654:-,decapping_mRNA_1A	JHUEM7_ENDOMETRIUM	0.1	0.2	0.0548	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	ZHX3--CHD6	1	2	ZHX3	6977	chr20:39896103:-	CHD6	65880	chr20:40045434:-	ONLY_REF_SPLICE	NO	9	15	0.25	0.17	0.0137	0.0274	LOCAL_REARRANGEMENT:-:[84429],ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3,CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6	JHUEM7_ENDOMETRIUM	0.17	0.25	0.0411	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	RP11-47I22.3--PRKCH	1	1	RP11-47I22.3	1221	chr14:62037478:+	PRKCH	26390	chr14:61909829:+	ONLY_REF_SPLICE	YES	70	4	0.03	0.33	0.0137	0.0137	YOSHIHARA_TCGA_num_samples[BRCA:2|KIRC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[19564],RP11-47I22.3->chr14:62037258-62125414:+,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	JHUEM7_ENDOMETRIUM	0.03	0.33	0.0274	TRUE	0	2	0	1	2	TRUE	ACH-000993
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	2616	1422	TATDN1	8556	chr8:125527987:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	81	3	0.98	1	30.4427	16.548	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.98	1	46.9907	TRUE	0	0	0	6	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	11	8554	FGFR2	30109	chr10:123241584:-	COL14A1	77744	chr8:121301847:+	INCL_NON_REF_SPLICE	YES	154	321	0.98	0.96	0.128	99.5439	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0.96	0.98	99.6719	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	945	5	TATDN1	1434	chr8:125551266:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	7	3	0.99	1	10.9971	0.0582	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.99	1	11.0553	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	4	2569	FGFR2	29001	chr10:123243212:-	COL14A1	78903	chr8:121309750:+	ONLY_REF_SPLICE	YES	217	3840	0.92	0.4	0.0465	29.8958	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0.4	0.92	29.9423	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	282	1110	TATDN1	8415	chr8:125528128:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	80	3	0.95	1	3.2817	12.9172	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.95	1	16.1989	TRUE	0	0	0	6	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	248	308	TATDN1	7195	chr8:125531059:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	802	3	0.41	0.99	2.886	3.5842	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.41	0.99	6.4702	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	3	1245	FGFR2	29001	chr10:123243212:-	COL14A1	79981	chr8:121312971:+	ONLY_REF_SPLICE	YES	217	6523	0.85	0.16	0.0349	14.4882	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0.16	0.85	14.5231	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	20	519	FGFR2	29001	chr10:123243212:-	COL14A1	81068	chr8:121322248:+	ONLY_REF_SPLICE	YES	217	7228	0.71	0.07	0.2327	6.0397	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0.07	0.71	6.2724	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	11	383	TATDN1	7271	chr8:125530983:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	858	3	0.31	0.99	0.128	4.457	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.31	0.99	4.585	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	3	330	TATDN1	8556	chr8:125527987:-	DEPTOR	25556	chr8:121015216:+	ONLY_REF_SPLICE	YES	81	1266	0.8	0.21	0.0349	3.8402	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.21	0.8	3.8751	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	NUCKS1--PM20D1	56	32	NUCKS1	3476	chr1:205696828:-	PM20D1	24456	chr1:205801894:-	ONLY_REF_SPLICE	YES	1076	0	0.08	1	0.6517	0.3724	LOCAL_REARRANGEMENT:-:[77746],NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1,PM20D1->chr1:205797150-205819260:-,peptidase_M20_domain_containing_1	NCIH716_LARGE_INTESTINE	0.08	1	1.0241	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	3	218	TATDN1	7195	chr8:125531059:-	DEPTOR	24414	chr8:121013808:+	INCL_NON_REF_SPLICE	YES	802	4	0.22	0.98	0.0349	2.5369	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.22	0.98	2.5718	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	4	181	TATDN1	5617	chr8:125534392:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	884	3	0.17	0.98	0.0465	2.1063	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.17	0.98	2.1528	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	11	140	TATDN1	4831	chr8:125535178:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	532	3	0.22	0.98	0.128	1.6292	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.22	0.98	1.7572	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	UBE3A--ATP10A	38	19	UBE3A	1493	chr15:25683636:-	ATP10A	28363	chr15:25981288:-	ONLY_REF_SPLICE	YES	61	0	0.48	1	0.4422	0.2211	UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A,ATP10A->ATPase_phospholipid_transporting_10A_(putative),chr15:25922420-26110317:-	NCIH716_LARGE_INTESTINE	0.48	1	0.6633	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	34	12	TATDN1	1531	chr8:125551169:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	44	3	0.51	0.94	0.3957	0.1396	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.51	0.94	0.5353	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	IDS--CXorf40A	17	10	IDS	20001	chrX:148571845:-	CXorf40A	33284	chrX:148623564:+	ONLY_REF_SPLICE	YES	222	49	0.11	0.36	0.1978	0.1164	LOCAL_INVERSION:-,chrX:+:[6430],IDS->chrX:148558521-148615470:-,chrX:148564074-148615470:-,iduronate_2-sulfatase,CXorf40A->chrX:148621900-148632055:+,chromosome_X_open_reading_frame_40A	NCIH716_LARGE_INTESTINE	0.11	0.36	0.3142	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	NPLOC4--PDE6G	9	0	NPLOC4	7044	chr17:79580344:-	PDE6G	38860	chr17:79618715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1047	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	NCIH716_LARGE_INTESTINE	1	1	0.1047	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	CASC9--RP11-300E4.2	6	0	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH716_LARGE_INTESTINE	1	1	0.0698	TRUE	0	23	0	19	23	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	2	12	TATDN1	2128	chr8:125550572:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	61	3	0.19	0.82	0.0233	0.1396	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.19	0.82	0.1629	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	CENPK--CHMP1A	4	0	CENPK	14117	chr5:64817302:-	CHMP1A	23763	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0465	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Cells_-_Transformed_fibroblasts=1},{Klijn_CCL:Skin=1},CENPK->centromere_protein_K,chr5:64813593-64858998:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH716_LARGE_INTESTINE	1	1	0.0465	TRUE	1	1	0	3	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	EEF1A2--GAPDH	4	0	EEF1A2	3429	chr20:62127270:-	GAPDH	15269	chr12:6646296:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,EEF1A2->Oncogene{Bushman},chr20:62119366-62130505:-,eukaryotic_translation_elongation_factor_1_alpha_2,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	NCIH716_LARGE_INTESTINE	1	1	0.0465	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	PVT1--KIAA0196	3	0	PVT1	1202	chr8:128806980:+	KIAA0196	55356	chr8:126040949:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,KIAA0196->KIAA0196,chr8:126036502-126104082:-	NCIH716_LARGE_INTESTINE	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	PVT1--MRPL13	2	3	PVT1	6936	chr8:128867565:+	MRPL13	39248	chr8:121393413:-	ONLY_REF_SPLICE	YES	27	2	0.16	0.71	0.0233	0.0349	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	NCIH716_LARGE_INTESTINE	0.16	0.71	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	ZNF580--ZNF331	2	3	ZNF580	1697	chr19:56147078:+	ZNF331	21627	chr19:54079951:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0233	0.0349	HGNC_GENEFAM,PROTCLUST,ZNF580->chr19:56146382-56154835:+,zinc_finger_protein_580,ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331	NCIH716_LARGE_INTESTINE	0.83	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	ASPH--FAM160A2	2	0	ASPH	27900	chr8:62531537:-	FAM160A2	57218	chr11:6236141:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,FAM160A2->chr11:6232565-6255941:-,family_with_sequence_similarity_160_member_A2	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	CDC42BPA--ARF1	2	0	CDC42BPA	2470	chr1:227504706:-	ARF1	59431	chr1:228284779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-,ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	PSPC1--MNAT1	2	0	PSPC1	7403	chr13:20304379:-	MNAT1	26418	chr14:61346432:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	R3HDM2--OS9	2	0	R3HDM2	2356	chr12:57789532:-	OS9	36037	chr12:58109543:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	3	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	RECK--CHMP1A	2	0	RECK	8005	chr9:36065621:+	CHMP1A	37619	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	RECK->chr9:36036430-36124448:+,reversion_inducing_cysteine_rich_protein_with_kazal_motifs,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-138J23.1--MKLN1	2	0	RP11-138J23.1	4151	chr5:103439988:+	MKLN1	19348	chr7:131096065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	RP11-138J23.1->chr5:103415612-103441104:+,MKLN1->chr7:130794855-131181395:+,muskelin_1	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	SS18L1--DIDO1	2	0	SS18L1	1124	chr20:60718945:+	DIDO1	21284	chr20:61545758:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	NUCKS1--PM20D1	1	1	NUCKS1	1320	chr1:205719085:-	PM20D1	24456	chr1:205801894:-	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0116	0.0116	LOCAL_REARRANGEMENT:-:[77746],NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1,PM20D1->chr1:205797150-205819260:-,peptidase_M20_domain_containing_1	NCIH716_LARGE_INTESTINE	0.14	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH2170_LUNG	RARA--TCAP	885	255	RARA	1095	chr17:38465538:+	TCAP	22188	chr17:37821969:+	ONLY_REF_SPLICE	YES	0	38	1	0.97	10.1703	2.9304	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,TCAP->chr17:37820440-37822808:+,titin-cap	NCIH2170_LUNG	0.97	1	13.1007	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	RARA--STARD3	474	79	RARA	1095	chr17:38465538:+	STARD3	30462	chr17:37818504:+	ONLY_REF_SPLICE	YES	0	78	1	0.88	5.4471	0.9079	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+	NCIH2170_LUNG	0.88	1	6.355	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	RARA--STARD3	89	46	RARA	1095	chr17:38465538:+	STARD3	31015	chr17:37819057:+	ONLY_REF_SPLICE	YES	0	218	1	0.38	1.0228	0.5286	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+	NCIH2170_LUNG	0.38	1	1.5514	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	RARA--TCAP	20	263	RARA	1095	chr17:38465538:+	TCAP	21845	chr17:37821626:+	INCL_NON_REF_SPLICE	YES	0	24	1	0.92	0.2298	3.0224	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,TCAP->chr17:37820440-37822808:+,titin-cap	NCIH2170_LUNG	0.92	1	3.2522	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	IKZF3--WIPF2	69	54	IKZF3	3225	chr17:37985640:-	WIPF2	17266	chr17:38416787:+	ONLY_REF_SPLICE	YES	0	82	1	0.6	0.7929	0.6206	IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-,WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+	NCIH2170_LUNG	0.6	1	1.4135	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	KIAA0391--ARHGAP5	22	15	KIAA0391	6550	chr14:35649983:+	ARHGAP5	29645	chr14:32586346:+	ONLY_REF_SPLICE	YES	350	91	0.1	0.29	0.2528	0.1724	{Klijn_CCL:Lung=1},KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+,ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+	NCIH2170_LUNG	0.1	0.29	0.4252	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	RBMS1--AC009299.2	17	16	RBMS1	8516	chr2:161223727:-	AC009299.2	33938	chr2:162105096:-	ONLY_REF_SPLICE	YES	81	0	0.29	1	0.1954	0.1839	RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,AC009299.2->chr2:162079296-162111179:-	NCIH2170_LUNG	0.29	1	0.3793	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	TRIM33--DENND2C	12	14	TRIM33	3895	chr1:115005726:-	DENND2C	32033	chr1:115197382:-	ONLY_REF_SPLICE	YES	346	1	0.07	0.96	0.1379	0.1609	LOCAL_REARRANGEMENT:-:[71688],TRIM33->Oncogene{Bushman},chr1:114935399-115053781:-,tripartite_motif_containing_33,DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-	NCIH2170_LUNG	0.07	0.96	0.2988	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	RBMS1--AC009299.2	13	9	RBMS1	8516	chr2:161223727:-	AC009299.2	37752	chr2:162079994:-	ONLY_REF_SPLICE	YES	81	1	0.21	0.96	0.1494	0.1034	RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,AC009299.2->chr2:162079296-162111179:-	NCIH2170_LUNG	0.21	0.96	0.2528	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	COG5--MIPOL1	7	6	COG5	7293	chr7:107167682:-	MIPOL1	69062	chr14:38016110:+	ONLY_REF_SPLICE	YES	85	55	0.13	0.19	0.0804	0.069	COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	NCIH2170_LUNG	0.13	0.19	0.1494	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	KIAA0391--ARHGAP5	4	15	KIAA0391	6550	chr14:35649983:+	ARHGAP5	29648	chr14:32586349:+	ONLY_REF_SPLICE	YES	350	82	0.05	0.19	0.046	0.1724	{Klijn_CCL:Lung=1},KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+,ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+	NCIH2170_LUNG	0.05	0.19	0.2184	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	TRIM33--DENND2C	5	11	TRIM33	3895	chr1:115005726:-	DENND2C	33290	chr1:115188180:-	ONLY_REF_SPLICE	YES	346	7	0.04	0.7	0.0575	0.1264	LOCAL_REARRANGEMENT:-:[71688],TRIM33->Oncogene{Bushman},chr1:114935399-115053781:-,tripartite_motif_containing_33,DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-	NCIH2170_LUNG	0.04	0.7	0.1839	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	IKZF3--WIPF2	3	13	IKZF3	3225	chr17:37985640:-	WIPF2	18570	chr17:38418777:+	ONLY_REF_SPLICE	YES	0	65	1	0.2	0.0345	0.1494	IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-,WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+	NCIH2170_LUNG	0.2	1	0.1839	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	CRIP2--SERINC2	6	0	CRIP2	2944	chr14:105941242:+	SERINC2	22462	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.069	0	CRIP2->Oncogene{Bushman},chr14:105939299-105946499:+,cysteine_rich_protein_2,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	NCIH2170_LUNG	1	1	0.069	TRUE	0	1	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	IKZF3--WIPF2	1	7	IKZF3	3225	chr17:37985640:-	WIPF2	19687	chr17:38420742:+	ONLY_REF_SPLICE	YES	0	110	1	0.07	0.0115	0.0804	IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-,WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+	NCIH2170_LUNG	0.07	1	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	IKZF3--WIPF2	2	0	IKZF3	3225	chr17:37985640:-	WIPF2	21521	chr17:38430042:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-,WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+	NCIH2170_LUNG	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	OLA1--SP3	2	0	OLA1	2984	chr2:175111443:-	SP3	23997	chr2:174820960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-,SP3->Sp3_transcription_factor,chr2:174771187-174830430:-	NCIH2170_LUNG	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	PROSC--GNAS	2	0	PROSC	2996	chr8:37623873:+	GNAS	28232	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2170_LUNG	1	1	0.023	TRUE	0	3	1	3	0	TRUE	ACH-000481
NCIH2170_LUNG	RAB27B--TXNL1	2	0	RAB27B	2784	chr18:52495931:+	TXNL1	22318	chr18:54293688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	RAB27B->RAB27B,_member_RAS_oncogene_family,chr18:52385091-52562747:+,TXNL1->chr18:54264439-54318831:-,thioredoxin_like_1	NCIH2170_LUNG	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	ZDHHC20--ELF1	2	0	ZDHHC20	1317	chr13:22033193:-	ELF1	31459	chr13:41508164:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	ZDHHC20->chr13:21950263-22033509:-,zinc_finger_DHHC-type_containing_20,ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-	NCIH2170_LUNG	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000481
CORL23_LUNG	EFCAB4B--C12orf5	976	899	EFCAB4B	2441	chr12:3862181:-	C12orf5	39713	chr12:4440446:+	ONLY_REF_SPLICE	YES	50	63	0.97	0.97	10.8883	10.0293	EFCAB4B->chr12:3715799-3873985:-,C12orf5->chr12:4430371-4462338:+	CORL23_LUNG	0.97	0.97	20.9176	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	PVT1--CASC11	234	258	PVT1	18060	chr8:129022690:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	37	0	0.93	1	2.6105	2.8783	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CORL23_LUNG	0.93	1	5.4888	TRUE	0	1	0	2	1	TRUE	ACH-000662
CORL23_LUNG	EFCAB4B--C12orf5	36	821	EFCAB4B	2441	chr12:3862181:-	C12orf5	41871	chr12:4446205:+	ONLY_REF_SPLICE	YES	50	569	0.94	0.6	0.4016	9.1591	EFCAB4B->chr12:3715799-3873985:-,C12orf5->chr12:4430371-4462338:+	CORL23_LUNG	0.6	0.94	9.5607	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	PVT1--CASC11	149	113	PVT1	13955	chr8:129001537:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	162	0	0.62	1	1.6622	1.2606	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CORL23_LUNG	0.62	1	2.9228	TRUE	0	1	0	1	1	TRUE	ACH-000662
CORL23_LUNG	EFCAB4B--C12orf5	2	370	EFCAB4B	2441	chr12:3862181:-	C12orf5	42993	chr12:4458985:+	ONLY_REF_SPLICE	YES	50	1303	0.88	0.22	0.0223	4.1277	EFCAB4B->chr12:3715799-3873985:-,C12orf5->chr12:4430371-4462338:+	CORL23_LUNG	0.22	0.88	4.15	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	PVT1--CASC11	4	260	PVT1	19222	chr8:129060855:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	38	0	0.87	1	0.0446	2.9006	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CORL23_LUNG	0.87	1	2.9452	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	EFCAB4B--C12orf5	1	220	EFCAB4B	2441	chr12:3862181:-	C12orf5	44071	chr12:4460433:+	ONLY_REF_SPLICE	YES	50	1173	0.82	0.16	0.0112	2.4543	EFCAB4B->chr12:3715799-3873985:-,C12orf5->chr12:4430371-4462338:+	CORL23_LUNG	0.16	0.82	2.4655	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	CDKN2A--PTPRD	35	43	CDKN2A	2163	chr9:21994138:-	PTPRD	14707	chr9:10341017:-	ONLY_REF_SPLICE	YES	1362	0	0.05	1	0.3905	0.4797	CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	CORL23_LUNG	0.05	1	0.8702	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	CTC-338M12.9--KMT2C	17	32	CTC-338M12.9	2428	chr5:180710532:+	KMT2C	13003	chr7:151970952:-	INCL_NON_REF_SPLICE	YES	1	7	0.98	0.88	0.1897	0.357	CTC-338M12.9->chr5:180708376-180710653:+,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	CORL23_LUNG	0.88	0.98	0.5467	TRUE	0	0	0	3	0	TRUE	ACH-000662
CORL23_LUNG	PPARD--SCUBE3	15	24	PPARD	2208	chr6:35314927:+	SCUBE3	16167	chr6:35195357:+	ONLY_REF_SPLICE	YES	173	0	0.18	1	0.1673	0.2677	LOCAL_REARRANGEMENT:+:[89479],PPARD->Oncogene{Bushman},chr6:35310335-35395968:+,peroxisome_proliferator_activated_receptor_delta,SCUBE3->chr6:35182190-35220856:+,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_3	CORL23_LUNG	0.18	1	0.435	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	RCC1--SNX5	7	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0781	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	CORL23_LUNG	1	1	0.0781	TRUE	0	5	0	11	0	TRUE	ACH-000662
CORL23_LUNG	PEX14--NCL	5	0	PEX14	13241	chr1:10689909:+	NCL	22031	chr2:232326380:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14,NCL->chr2:232318242-232348352:-,nucleolin	CORL23_LUNG	1	1	0.0558	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	SCAF8--RP11-103H7.2	3	1	SCAF8	19163	chr6:155143543:+	RP11-103H7.2	30141	chr8:127512122:+	ONLY_REF_SPLICE	YES	75	0	0.05	1	0.0335	0.0112	SCAF8->SR-related_CTD_associated_factor_8,chr6:155054459-155155192:+,RP11-103H7.2->chr8:127510394-127512548:+	CORL23_LUNG	0.05	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	EIF3B--MAD1L1	3	0	EIF3B	15726	chr7:2416710:+	MAD1L1	50054	chr7:2041756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	CORL23_LUNG	1	1	0.0335	TRUE	0	13	0	3	1	TRUE	ACH-000662
CORL23_LUNG	PCAT1--RP11-622O11.4	3	0	PCAT1	2153	chr8:127890035:+	RP11-622O11.4	11944	chr8:127011397:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-622O11.4->chr8:127011238-127013245:-	CORL23_LUNG	1	1	0.0335	TRUE	0	1	0	1	1	TRUE	ACH-000662
CORL23_LUNG	RASSF8--TULP3	3	0	RASSF8	9484	chr12:26208379:+	TULP3	24700	chr12:3018695:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,TULP3->chr12:2986389-3050306:+,tubby_like_protein_3	CORL23_LUNG	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	TMEM261--RPS19	3	0	TMEM261	4773	chr9:7798540:-	RPS19	10160	chr19:42364324:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	TMEM261->chr9:7796490-7888380:-,transmembrane_protein_261,RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19	CORL23_LUNG	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	CASC1--FGF23	1	7	CASC1	11198	chr12:25299935:-	FGF23	25164	chr12:4481863:-	ONLY_REF_SPLICE	YES	1	2	0.89	0.8	0.0112	0.0781	CASC1->cancer_susceptibility_candidate_1,chr12:25261354-25348096:-,FGF23->ArcherDX_panel,FoundationOne_panel,chr12:4477393-4488894:-,fibroblast_growth_factor_23	CORL23_LUNG	0.8	0.89	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	C11orf57--THOC2	2	0	C11orf57	4850	chr11:111951282:+	THOC2	45411	chrX:122745367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	C11orf57->chr11:111944810-111955874:+,chromosome_11_open_reading_frame_57,THOC2->THO_complex_2,chrX:122734412-122866906:-	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	DNMBP--PHF21A	2	0	DNMBP	3360	chr10:101728872:-	PHF21A	52368	chr11:45959863:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein,PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	IMMP2L--CHCHD3	2	0	IMMP2L	4976	chr7:111127294:-	CHCHD3	19985	chr7:132754989:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	ITSN1--TXNL4A	2	0	ITSN1	25806	chr21:35172233:+	TXNL4A	75616	chr18:77737701:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	ITSN1->chr21:35014706-35272165:+,intersectin_1,TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	POMT2--ALKBH1	2	0	POMT2	1451	chr14:77786777:-	ALKBH1	34182	chr14:78146313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	POMT2->chr14:77741299-77787227:-,protein_O-mannosyltransferase_2,ALKBH1->alkB_homolog_1,_histone_H2A_dioxygenase,chr14:78138747-78174363:-	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	18	0	TRUE	ACH-000662
CORL23_LUNG	TSPAN9--TEAD4	2	0	TSPAN9	1099	chr12:3186619:+	TEAD4	29959	chr12:3147134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_REARRANGEMENT:+:[36682],TSPAN9->chr12:3186521-3395730:+,tetraspanin_9,TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	RP11-307P5.1--SASH1	1	1	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	NO	9	17	0.18	0.11	0.0112	0.0112	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	CORL23_LUNG	0.11	0.18	0.0224	TRUE	0	0	0	16	0	TRUE	ACH-000662
JHOM1_OVARY	RNF10--RAB35	54	46	RNF10	2489	chr12:120972771:+	RAB35	28023	chr12:120541753:-	ONLY_REF_SPLICE	YES	159	44	0.39	0.69	0.5639	0.4803	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,RAB35->RAB35,_member_RAS_oncogene_family,chr12:120532899-120555306:-	JHOM1_OVARY	0.39	0.69	1.0442	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	PRPF39--UHRF1BP1L	51	22	PRPF39	1151	chr14:45553452:+	UHRF1BP1L	36220	chr12:100451524:-	ONLY_REF_SPLICE	YES	74	10	0.5	0.88	0.5325	0.2297	PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39,UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-	JHOM1_OVARY	0.5	0.88	0.7622	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	MTAP--RP11-399D6.2	20	10	MTAP	1239	chr9:21802780:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2088	0.1044	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	JHOM1_OVARY	1	1	0.3132	TRUE	0	2	0	1	2	TRUE	ACH-000237
JHOM1_OVARY	SLCO2B1--RAB30	19	7	SLCO2B1	16498	chr11:74907724:+	RAB30	30742	chr11:82745824:-	ONLY_REF_SPLICE	YES	274	57	0.09	0.31	0.1984	0.0731	SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1,RAB30->RAB30,_member_RAS_oncogene_family,chr11:82684175-82782965:-	JHOM1_OVARY	0.09	0.31	0.2715	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	COQ5--TMEM132B	14	4	COQ5	6560	chr12:120960017:-	TMEM132B	19649	chr12:125900077:+	ONLY_REF_SPLICE	YES	51	0	0.26	1	0.1462	0.0418	COQ5->chr12:120941077-120972237:-,coenzyme_Q5,_methyltransferase,TMEM132B->chr12:125671382-126146917:+,transmembrane_protein_132B	JHOM1_OVARY	0.26	1	0.188	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	AGPS--HOXD10	13	6	AGPS	15086	chr2:178364458:+	HOXD10	30347	chr2:176973635:+	INCL_NON_REF_SPLICE	YES	82	0	0.19	1	0.1357	0.0627	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,HOXD10->chr2:176973518-176984670:+,homeobox_D10	JHOM1_OVARY	0.19	1	0.1984	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	HK3--UIMC1	10	3	HK3	7737	chr5:176314003:-	UIMC1	30920	chr5:176338390:-	ONLY_REF_SPLICE	YES	0	72	1	0.15	0.1044	0.0313	LOCAL_REARRANGEMENT:-:[5673],HK3->chr5:176307870-176326333:-,hexokinase_3,UIMC1->chr5:176332006-176449634:-,ubiquitin_interaction_motif_containing_1	JHOM1_OVARY	0.15	1	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	XXbac-BPG252P9.9--IFI27	8	7	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	3813	6	0	0.71	0.0835	0.0731	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	JHOM1_OVARY	0	0.71	0.1566	TRUE	0	2	0	13	2	TRUE	ACH-000237
JHOM1_OVARY	AGPS--HOXD8	8	5	AGPS	15086	chr2:178364458:+	HOXD8	31853	chr2:176996045:+	ONLY_REF_SPLICE	YES	82	0	0.14	1	0.0835	0.0522	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,HOXD8->chr2:176994422-176997423:+,homeobox_D8	JHOM1_OVARY	0.14	1	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	RNF10--RAB35	3	19	RNF10	2489	chr12:120972771:+	RAB35	29455	chr12:120536958:-	ONLY_REF_SPLICE	YES	159	73	0.12	0.23	0.0313	0.1984	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,RAB35->RAB35,_member_RAS_oncogene_family,chr12:120532899-120555306:-	JHOM1_OVARY	0.12	0.23	0.2297	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	FCHSD2--SHANK2	6	3	FCHSD2	4185	chr11:72794740:-	SHANK2	31894	chr11:70935842:-	ONLY_REF_SPLICE	YES	10	5	0.47	0.64	0.0627	0.0313	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	JHOM1_OVARY	0.47	0.64	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	PRPF39--UHRF1BP1L	4	5	PRPF39	1151	chr14:45553452:+	UHRF1BP1L	38049	chr12:100444999:-	ONLY_REF_SPLICE	YES	74	31	0.11	0.23	0.0418	0.0522	PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39,UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-	JHOM1_OVARY	0.11	0.23	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	MTAP--RP11-399D6.2	2	11	MTAP	1408	chr9:21802949:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0.1149	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	JHOM1_OVARY	1	1	0.1358	TRUE	0	2	0	1	2	TRUE	ACH-000237
JHOM1_OVARY	AC016629.8--COL4A3	3	4	AC016629.8	1281	chr19:59070776:+	COL4A3	32442	chr2:228137665:+	ONLY_REF_SPLICE	YES	12	80	0.37	0.08	0.0313	0.0418	AC016629.8->chr19:59070496-59086164:+,COL4A3->Oncogene{Bushman},chr2:228029281-228179508:+,collagen_type_IV_alpha_3	JHOM1_OVARY	0.08	0.37	0.0731	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	MTAP--RP11-399D6.2	1	11	MTAP	3033	chr9:21808999:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0104	0.1149	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	JHOM1_OVARY	1	1	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	AGPS--HOXD8	2	5	AGPS	15086	chr2:178364458:+	HOXD8	31856	chr2:176996048:+	ONLY_REF_SPLICE	YES	82	0	0.08	1	0.0209	0.0522	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,HOXD8->chr2:176994422-176997423:+,homeobox_D8	JHOM1_OVARY	0.08	1	0.0731	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	LAMP1--PKM	3	0	LAMP1	10141	chr13:113976769:+	PKM	15012	chr15:72523512:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	JHOM1_OVARY	1	1	0.0313	TRUE	0	0	0	3	0	TRUE	ACH-000237
JHOM1_OVARY	PUF60--SPP1	3	0	PUF60	7610	chr8:144904055:-	SPP1	16018	chr4:88896880:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	PUF60->chr8:144898514-144912029:-,poly(U)_binding_splicing_factor_60KDa,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	JHOM1_OVARY	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	COQ5--TMEM132B	2	2	COQ5	2370	chr12:120966743:-	TMEM132B	19649	chr12:125900077:+	ONLY_REF_SPLICE	YES	57	0	0.07	1	0.0209	0.0209	COQ5->chr12:120941077-120972237:-,coenzyme_Q5,_methyltransferase,TMEM132B->chr12:125671382-126146917:+,transmembrane_protein_132B	JHOM1_OVARY	0.07	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	HK3--UIMC1	2	1	HK3	7288	chr5:176314452:-	UIMC1	30920	chr5:176338390:-	ONLY_REF_SPLICE	YES	9	72	0.25	0.04	0.0209	0.0104	LOCAL_REARRANGEMENT:-:[5673],HK3->chr5:176307870-176326333:-,hexokinase_3,UIMC1->chr5:176332006-176449634:-,ubiquitin_interaction_motif_containing_1	JHOM1_OVARY	0.04	0.25	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	ARHGAP44--TPM1	2	0	ARHGAP44	1353	chr17:12693208:+	TPM1	39235	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	JHOM1_OVARY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	KIF26B--SMYD3	2	0	KIF26B	2699	chr1:245319985:+	SMYD3	58974	chr1:246027188:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	JHOM1_OVARY	1	1	0.0209	TRUE	0	2	0	1	2	TRUE	ACH-000237
JHOM1_OVARY	RBMS3--GNB1	2	0	RBMS3	1775	chr3:29323247:+	GNB1	48181	chr1:1718876:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	JHOM1_OVARY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	SQSTM1--CARS	2	0	SQSTM1	11218	chr5:179250053:+	CARS	27374	chr11:3060522:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	SQSTM1->chr5:179233388-179265078:+,sequestosome_1,CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase	JHOM1_OVARY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	STX7--HERC4	2	0	STX7	2335	chr6:132824585:-	HERC4	44704	chr10:69773943:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	STX7->chr6:132767006-132834337:-,syntaxin_7,HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-	JHOM1_OVARY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	TUBA1B--GNAS	2	0	TUBA1B	1100	chr12:49525081:-	GNAS	23453	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	JHOM1_OVARY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	UBL3--SLC7A1	2	0	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	JHOM1_OVARY	1	1	0.0209	TRUE	1	5	0	8	1	TRUE	ACH-000237
JHOM1_OVARY	FCHSD2--SHANK2	1	3	FCHSD2	4185	chr11:72794740:-	SHANK2	30789	chr11:70937715:-	ONLY_REF_SPLICE	YES	10	5	0.29	0.44	0.0104	0.0313	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	JHOM1_OVARY	0.29	0.44	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	FBXW8--CRADD	1	1	FBXW8	1202	chr12:117348962:+	CRADD	21087	chr12:94072545:+	ONLY_REF_SPLICE	YES	55	0	0.04	1	0.0104	0.0104	FBXW8->F-box_and_WD_repeat_domain_containing_8,chr12:117348761-117468953:+,CRADD->CASP2_and_RIPK1_domain_containing_adaptor_with_death_domain,chr12:94071151-94288616:+	JHOM1_OVARY	0.04	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000237
HT1080_SOFT_TISSUE	ANP32B--SEPT7	11	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1126	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	HT1080_SOFT_TISSUE	1	1	0.1126	TRUE	1	1	0	18	1	TRUE	ACH-000054
HT1080_SOFT_TISSUE	ANPEP--EEF1D	2	0	ANPEP	1630	chr15:90358004:-	EEF1D	30446	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HT1080_SOFT_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000054
HT1080_SOFT_TISSUE	ATR--U2SURP	2	0	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	HT1080_SOFT_TISSUE	1	1	0.0205	TRUE	0	10	0	10	7	TRUE	ACH-000054
HT1080_SOFT_TISSUE	PVT1--FAM49B	2	0	PVT1	1202	chr8:128806980:+	FAM49B	36309	chr8:130915596:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	HT1080_SOFT_TISSUE	1	1	0.0205	TRUE	0	1	0	1	0	TRUE	ACH-000054
HT1080_SOFT_TISSUE	RHBDL2--TCP1	2	0	RHBDL2	1118	chr1:39407354:-	TCP1	23025	chr6:160201119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	RHBDL2->chr1:39351479-39407471:-,rhomboid,_veinlet-like_2_(Drosophila),TCP1->chr6:160199530-160210781:-,t-complex_1	HT1080_SOFT_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000054
HT1080_SOFT_TISSUE	RP11-307P5.1--SASH1	1	2	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	NO	12	7	0.2	0.3	0.0102	0.0205	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HT1080_SOFT_TISSUE	0.2	0.3	0.0307	TRUE	0	0	0	16	0	TRUE	ACH-000054
5637_URINARY_TRACT	TAOK1--CCL13	103	69	TAOK1	14861	chr17:27829741:+	CCL13	41110	chr17:32685045:+	ONLY_REF_SPLICE	YES	63	0	0.73	1	1.1408	0.7642	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,CCL13->C-C_motif_chemokine_ligand_13,chr17:32683471-32685629:+	5637_URINARY_TRACT	0.73	1	1.905	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	CTC-210G5.1--CTD-2354A18.1	74	18	CTC-210G5.1	2805	chr5:121812483:-	CTD-2354A18.1	16158	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	78	1	0.54	0.8196	0.1994	CTC-210G5.1->chr5:121772192-121814782:-,CTD-2354A18.1->chr18:70992176-71017113:+	5637_URINARY_TRACT	0.54	1	1.019	TRUE	0	1	0	1	1	TRUE	ACH-000905
5637_URINARY_TRACT	TIAM1--ATP5O	51	41	TIAM1	23372	chr21:32537279:-	ATP5O	47704	chr21:35276325:-	ONLY_REF_SPLICE	YES	22	1310	0.81	0.07	0.5648	0.4541	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,ATP5O->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_O_subunit,chr21:35275757-35288284:-	5637_URINARY_TRACT	0.07	0.81	1.0189	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	CASC15--PPARG	41	31	CASC15	10325	chr6:21909834:+	PPARG	42654	chr3:12421203:+	ONLY_REF_SPLICE	YES	45	382	0.62	0.16	0.4541	0.3433	CASC15->cancer_susceptibility_candidate_15_(non-protein_coding),chr6:21665003-22214734:+,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	5637_URINARY_TRACT	0.16	0.62	0.7974	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	CTC-210G5.1--CTD-2354A18.1	48	0	CTC-210G5.1	1384	chr5:121814399:-	CTD-2354A18.1	13401	chr18:70992311:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5316	0	CTC-210G5.1->chr5:121772192-121814782:-,CTD-2354A18.1->chr18:70992176-71017113:+	5637_URINARY_TRACT	1	1	0.5316	TRUE	0	1	0	1	1	TRUE	ACH-000905
5637_URINARY_TRACT	PSMD8--SIPA1L3	37	26	PSMD8	5186	chr19:38871639:+	SIPA1L3	36379	chr19:38673159:+	ONLY_REF_SPLICE	YES	732	198	0.08	0.24	0.4098	0.288	PSMD8->chr19:38865176-38874464:+,proteasome_26S_subunit,_non-ATPase_8,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	5637_URINARY_TRACT	0.08	0.24	0.6978	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	CBWD2--IL1RN	22	20	CBWD2	1332	chr2:114195599:+	IL1RN	33408	chr2:113885266:+	ONLY_REF_SPLICE	YES	323	129	0.12	0.25	0.2437	0.2215	CBWD2->COBW_domain_containing_2,chr2:114195268-114253766:+,IL1RN->chr2:113864791-113891593:+,interleukin_1_receptor_antagonist	5637_URINARY_TRACT	0.12	0.25	0.4652	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	ZMYND11--SLIT3	20	12	ZMYND11	3234	chr10:226068:+	SLIT3	25722	chr5:168678463:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2215	0.1329	ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11,SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3	5637_URINARY_TRACT	1	1	0.3544	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	CTC-210G5.1--CTD-2354A18.1	10	18	CTC-210G5.1	2805	chr5:121812483:-	CTD-2354A18.1	16160	chr18:70999700:+	ONLY_REF_SPLICE	YES	0	78	1	0.26	0.1108	0.1994	CTC-210G5.1->chr5:121772192-121814782:-,CTD-2354A18.1->chr18:70992176-71017113:+	5637_URINARY_TRACT	0.26	1	0.3102	TRUE	0	1	0	1	1	TRUE	ACH-000905
5637_URINARY_TRACT	PUM2--C2orf43	9	12	PUM2	19239	chr2:20462954:-	C2orf43	32966	chr2:21001225:-	ONLY_REF_SPLICE	YES	130	0	0.14	1	0.0997	0.1329	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,C2orf43->chr2:20883788-21022882:-	5637_URINARY_TRACT	0.14	1	0.2326	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	COL6A2--SPATC1L	9	0	COL6A2	1077	chr21:47518087:+	SPATC1L	26324	chr21:47588572:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0997	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},LOCAL_INVERSION:+:-:[28299],COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,SPATC1L->chr21:47581062-47604390:-,spermatogenesis_and_centriole_associated_1-like	5637_URINARY_TRACT	1	1	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	BBX--TRAT1	7	5	BBX	33455	chr3:107510146:+	TRAT1	47033	chr3:108549517:+	ONLY_REF_SPLICE	YES	51	0	0.19	1	0.0775	0.0554	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,TRAT1->T_cell_receptor_associated_transmembrane_adaptor_1,chr3:108541545-108573852:+	5637_URINARY_TRACT	0.19	1	0.1329	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	CTC-210G5.1--CTD-2354A18.1	3	19	CTC-210G5.1	2805	chr5:121812483:-	CTD-2354A18.1	16139	chr18:70999679:+	INCL_NON_REF_SPLICE	YES	0	96	1	0.19	0.0332	0.2104	CTC-210G5.1->chr5:121772192-121814782:-,CTD-2354A18.1->chr18:70992176-71017113:+	5637_URINARY_TRACT	0.19	1	0.2436	TRUE	0	1	0	1	1	TRUE	ACH-000905
5637_URINARY_TRACT	PUM2--C2orf43	4	3	PUM2	17971	chr2:20478344:-	C2orf43	32966	chr2:21001225:-	ONLY_REF_SPLICE	YES	115	0	0.06	1	0.0443	0.0332	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,C2orf43->chr2:20883788-21022882:-	5637_URINARY_TRACT	0.06	1	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	CTC-210G5.1--CTD-2354A18.1	4	0	CTC-210G5.1	1287	chr5:121814496:-	CTD-2354A18.1	13304	chr18:70992214:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	CTC-210G5.1->chr5:121772192-121814782:-,CTD-2354A18.1->chr18:70992176-71017113:+	5637_URINARY_TRACT	1	1	0.0443	TRUE	0	1	0	1	1	TRUE	ACH-000905
5637_URINARY_TRACT	SLIT3--ZMYND11	3	1	SLIT3	1617	chr5:168727517:-	ZMYND11	58052	chr10:255829:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0.0111	SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	5637_URINARY_TRACT	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	RP1-298M8.1--ZNF718	3	0	RP1-298M8.1	1211	chr20:17168989:+	ZNF718	7806	chr4:154702:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	NUCLCLUST,RP1-298M8.1->chr20:17168779-17168989:+,ZNF718->chr4:124386-157779:+,zinc_finger_protein_718	5637_URINARY_TRACT	1	1	0.0332	TRUE	1	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	ABCA5--ZNF395	2	0	ABCA5	1193	chr17:67323193:-	ZNF395	53245	chr8:28232899:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,ZNF395->chr8:28203102-28260218:-,zinc_finger_protein_395	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	ADAP1--GET4	2	0	ADAP1	9672	chr7:959605:-	GET4	25015	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=5;pct=0.06%;dist=Small_Intestine_-_Terminal_Ileum=1,Nerve_-_Tibial=1,Whole_Blood=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[1467],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	5637_URINARY_TRACT	1	1	0.0222	TRUE	1	1	0	4	0	TRUE	ACH-000905
5637_URINARY_TRACT	ANO7--ATG4B	2	0	ANO7	20467	chr2:242157796:+	ATG4B	28821	chr2:242590425:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	ANO7->anoctamin_7,chr2:242127924-242164792:+,ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	ARHGAP18--NMRAL1	2	0	ARHGAP18	1202	chr6:130031169:-	NMRAL1	31600	chr16:4519466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	ARHGAP18->Rho_GTPase_activating_protein_18,chr6:129897277-130031370:-,NMRAL1->NmrA-like_family_domain_containing_1,chr16:4511681-4545764:-	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	ATL3--STIP1	2	0	ATL3	1632	chr11:63438762:-	STIP1	24534	chr11:63960550:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx&tcga_normals:1/3694=0.03%,ATL3->atlastin_GTPase_3,chr11:63391559-63439393:-,STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	BCL9L--MYBL2	2	0	BCL9L	2450	chr11:118789535:-	MYBL2	21772	chr20:42302446:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	BCL9L->B-cell_CLL/lymphoma_9-like,chr11:118764584-118796317:-,MYBL2->MYB_proto-oncogene_like_2,Oncogene{Bushman},chr20:42295754-42345136:+	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	CHST15--CASP7	2	0	CHST15	1222	chr10:125852985:-	CASP7	23499	chr10:115480791:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	CHST15->carbohydrate_(N-acetylgalactosamine_4-sulfate_6-O)_sulfotransferase_15,chr10:125767184-125853206:-,CASP7->caspase_7,chr10:115438942-115490662:+	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	COG3--PICALM	2	0	COG3	13315	chr13:46067621:+	PICALM	47041	chr11:85695016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	COG3->chr13:46039060-46110765:+,component_of_oligomeric_golgi_complex_3,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	DAPP1--RAP1GDS1	2	0	DAPP1	3439	chr4:100761579:+	RAP1GDS1	17452	chr4:99214556:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	DAPP1->chr4:100737990-100791311:+,dual_adaptor_of_phosphotyrosine_and_3-phosphoinositides,RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	DGKH--VWA8	2	0	DGKH	24125	chr13:42772731:+	VWA8	84136	chr13:42277547:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[78920],DGKH->chr13:42614176-42830714:+,diacylglycerol_kinase_eta,VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	DOCK2--NPM1	2	0	DOCK2	28183	chr5:169230210:+	NPM1	70012	chr5:170818309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	EYA3--HMGB1	2	0	EYA3	1173	chr1:28415035:-	HMGB1	34120	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	JARID2--DSP	2	0	JARID2	2342	chr6:15249195:+	DSP	29620	chr6:7555951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,DSP->chr6:7541808-7586950:+,desmoplakin	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	LY6K--FAM120A	2	0	LY6K	2603	chr8:143783131:+	FAM120A	28721	chr9:96323391:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	LY6K->chr8:143781529-143786545:+,lymphocyte_antigen_6_complex,_locus_K,FAM120A->chr9:96214004-96328397:+,family_with_sequence_similarity_120A	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	NDST1--TCOF1	2	0	NDST1	7661	chr5:149901329:+	TCOF1	47040	chr5:149767506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	LOCAL_REARRANGEMENT:+:[85510],NDST1->N-deacetylase/N-sulfotransferase_1,chr5:149865381-149937773:+,TCOF1->chr5:149737202-149779871:+,treacle_ribosome_biogenesis_factor_1	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	PAQR3--PARD3	2	0	PAQR3	1399	chr4:79860194:-	PARD3	52709	chr10:34573173:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	PAQR3->chr4:79808281-79860592:-,progestin_and_adipoQ_receptor_family_member_3,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	PCNP--MAP3K8	2	0	PCNP	1185	chr3:101293123:+	MAP3K8	16367	chr10:30736711:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	PCNP->PEST_proteolytic_signal_containing_nuclear_protein,chr3:101292939-101313281:+,MAP3K8->Oncogene{Bushman},chr10:30722866-30750762:+,mitogen-activated_protein_kinase_kinase_kinase_8	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	PROSC--TUG1	2	0	PROSC	2996	chr8:37623873:+	TUG1	14643	chr22:31368910:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),TUG1->chr22:31366663-31375381:+,taurine_up-regulated_1_(non-protein_coding)	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	RBM25--ACTN1	2	0	RBM25	1270	chr14:73525413:+	ACTN1	35012	chr14:69392389:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	RBM26--MYCBP2	2	0	RBM26	1774	chr13:79979839:-	MYCBP2	94762	chr13:77673148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-,MYCBP2->MYC_binding_protein_2,_E3_ubiquitin_protein_ligase,chr13:77618792-77901185:-	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	RP6-99M1.2--FOXN3	2	0	RP6-99M1.2	1489	chrX:45629189:-	FOXN3	15663	chr14:89817152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	RP6-99M1.2->chrX:45604639-45629677:-,FOXN3->chr14:89591215-90085493:-,forkhead_box_N3	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	RP6-99M1.2--NFYB	2	0	RP6-99M1.2	1489	chrX:45629189:-	NFYB	9700	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	RP6-99M1.2->chrX:45604639-45629677:-,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	TMF1--UBA3	2	0	TMF1	1389	chr3:69101096:-	UBA3	31392	chr3:69112654:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	LOCAL_REARRANGEMENT:-:[2397],TMF1->TATA_element_modulatory_factor_1,chr3:69068978-69101484:-,UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	USP53--RP11-111G23.1	2	0	USP53	13898	chr4:120177678:+	RP11-111G23.1	43692	chr9:40337309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	USP53->chr4:120133742-120216672:+,ubiquitin_specific_peptidase_53,RP11-111G23.1->chr9:40293025-40339528:+	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	AFAP1--ABLIM2	1	2	AFAP1	1271	chr4:7941383:-	ABLIM2	59719	chr4:7986620:-	ONLY_REF_SPLICE	YES	70	1	0.04	0.75	0.0111	0.0222	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	5637_URINARY_TRACT	0.04	0.75	0.0333	TRUE	0	1	0	2	1	TRUE	ACH-000905
HELA_CERVIX	HNRNPUL2--C11orf49	344	96	HNRNPUL2	1731	chr11:62494091:-	C11orf49	17844	chr11:47008759:+	ONLY_REF_SPLICE	YES	301	35	0.59	0.93	3.8361	1.0705	{Klijn_CCL:Cervix=1},HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2,C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49	HELA_CERVIX	0.59	0.93	4.9066	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	B3GAT3--GANAB	234	148	B3GAT3	2679	chr11:62387969:-	GANAB	18845	chr11:62394825:-	ONLY_REF_SPLICE	YES	93	1554	0.8	0.2	2.6094	1.6504	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[2651],B3GAT3->beta-1,3-glucuronyltransferase_3,chr11:62382768-62389647:-,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	HELA_CERVIX	0.2	0.8	4.2598	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	HNRNPUL2--C11orf49	109	45	HNRNPUL2	1731	chr11:62494091:-	C11orf49	27547	chr11:47159196:+	ONLY_REF_SPLICE	YES	301	226	0.34	0.41	1.2155	0.5018	{Klijn_CCL:Cervix=1},HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2,C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49	HELA_CERVIX	0.34	0.41	1.7173	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	HNRNPUL2--C11orf49	24	67	HNRNPUL2	1731	chr11:62494091:-	C11orf49	23228	chr11:47073939:+	ONLY_REF_SPLICE	YES	301	157	0.23	0.37	0.2676	0.7471	{Klijn_CCL:Cervix=1},HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2,C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49	HELA_CERVIX	0.23	0.37	1.0147	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	29	15	SREBF2	1254	chr22:42229362:+	MEI1	47488	chr22:42154369:+	ONLY_REF_SPLICE	YES	114	7	0.28	0.86	0.3234	0.1673	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.28	0.86	0.4907	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	B3GAT3--GANAB	2	106	B3GAT3	2679	chr11:62387969:-	GANAB	19074	chr11:62394596:-	ONLY_REF_SPLICE	YES	93	1366	0.54	0.07	0.0223	1.182	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[2651],B3GAT3->beta-1,3-glucuronyltransferase_3,chr11:62382768-62389647:-,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	HELA_CERVIX	0.07	0.54	1.2043	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	HNRNPUL2--C11orf49	2	96	HNRNPUL2	1731	chr11:62494091:-	C11orf49	16705	chr11:46969577:+	ONLY_REF_SPLICE	YES	301	33	0.25	0.75	0.0223	1.0705	{Klijn_CCL:Cervix=1},HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2,C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49	HELA_CERVIX	0.25	0.75	1.0928	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	CCAT1--CASC8	19	15	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	55	7	0.38	0.83	0.2119	0.1673	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HELA_CERVIX	0.38	0.83	0.3792	TRUE	0	26	0	18	24	TRUE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	7	16	SREBF2	1254	chr22:42229362:+	MEI1	45032	chr22:42148595:+	ONLY_REF_SPLICE	YES	114	2	0.17	0.92	0.0781	0.1784	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.17	0.92	0.2565	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	3	15	SREBF2	1254	chr22:42229362:+	MEI1	46390	chr22:42149953:+	ONLY_REF_SPLICE	YES	114	8	0.14	0.69	0.0335	0.1673	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.14	0.69	0.2008	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	2	17	SREBF2	1254	chr22:42229362:+	MEI1	42647	chr22:42141889:+	ONLY_REF_SPLICE	YES	114	0	0.14	1	0.0223	0.1896	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.14	1	0.2119	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	2	17	SREBF2	1254	chr22:42229362:+	MEI1	43789	chr22:42144111:+	ONLY_REF_SPLICE	NO	114	0	0.14	1	0.0223	0.1896	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.14	1	0.2119	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	CRYBG3--TSHZ2	5	4	CRYBG3	1316	chr3:97541199:+	TSHZ2	38126	chr20:51870038:+	ONLY_REF_SPLICE	YES	4	9	0.69	0.5	0.0558	0.0446	CRYBG3->chr3:97540884-97594132:+,chr3:97595819-97663810:+,crystallin_beta-gamma_domain_containing_3,TSHZ2->chr20:51588946-52111869:+,teashirt_zinc_finger_homeobox_2	HELA_CERVIX	0.5	0.69	0.1004	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	IGFBP7--KRT17	6	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0669	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	HELA_CERVIX	1	1	0.0669	TRUE	0	0	0	9	0	TRUE	ACH-001086
HELA_CERVIX	AP003900.6--AC008132.1	4	7	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	4	0	0.73	1	0.0446	0.0781	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HELA_CERVIX	0.73	1	0.1227	TRUE	0	0	0	12	0	TRUE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	1	17	SREBF2	1254	chr22:42229362:+	MEI1	40620	chr22:42139084:+	ONLY_REF_SPLICE	YES	114	0	0.14	1	0.0112	0.1896	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.14	1	0.2008	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	1	17	SREBF2	1254	chr22:42229362:+	MEI1	41735	chr22:42140977:+	ONLY_REF_SPLICE	NO	114	0	0.14	1	0.0112	0.1896	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.14	1	0.2008	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	SLC39A10--SESTD1	3	4	SLC39A10	9336	chr2:196548630:+	SESTD1	25338	chr2:180056593:-	ONLY_REF_SPLICE	YES	75	15	0.09	0.32	0.0335	0.0446	SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10,SESTD1->SEC14_and_spectrin_domain_containing_1,chr2:179966419-180129517:-	HELA_CERVIX	0.09	0.32	0.0781	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	TMEM132A--TMEM109	4	0	TMEM132A	6648	chr11:60698131:+	TMEM109	17526	chr11:60687158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	LOCAL_REARRANGEMENT:+:[1020],TMEM132A->chr11:60691935-60704631:+,transmembrane_protein_132A,TMEM109->chr11:60681346-60690915:+,transmembrane_protein_109	HELA_CERVIX	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	INCENP--RP11-672A2.1	1	7	INCENP	8616	chr11:61908516:+	RP11-672A2.1	21204	chr11:76424230:-	ONLY_REF_SPLICE	YES	142	0	0.05	1	0.0112	0.0781	INCENP->chr11:61891445-61920635:+,inner_centromere_protein,RP11-672A2.1->chr11:76423440-76430652:-	HELA_CERVIX	0.05	1	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	INCENP--RP11-672A2.1	1	7	INCENP	9083	chr11:61908983:+	RP11-672A2.1	21204	chr11:76424230:-	ONLY_REF_SPLICE	YES	142	0	0.05	1	0.0112	0.0781	INCENP->chr11:61891445-61920635:+,inner_centromere_protein,RP11-672A2.1->chr11:76423440-76430652:-	HELA_CERVIX	0.05	1	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	RP11-20I20.2--CTBP1	2	1	RP11-20I20.2	1114	chr4:1107540:+	CTBP1	8481	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	32	1	0.09	0.0223	0.0112	LOCAL_INVERSION:+:-:[78471],RP11-20I20.2->chr4:1107427-1126765:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HELA_CERVIX	0.09	1	0.0335	TRUE	0	1	1	6	1	TRUE	ACH-001086
HELA_CERVIX	C4orf32--PPA2	2	0	C4orf32	1337	chr4:113066889:+	PPA2	23161	chr4:106345479:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	C4orf32->chr4:113066553-113116412:+,chromosome_4_open_reading_frame_32,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	FAT1--SEC23A	2	0	FAT1	9221	chr4:187560876:-	SEC23A	56913	chr14:39543734:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-,SEC23A->Sec23_homolog_A,_coat_complex_II_component,chr14:39501123-39578850:-	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	FER--ZNF131	2	0	FER	5687	chr5:108134090:+	ZNF131	51757	chr5:43122141:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	FER->FER_tyrosine_kinase,chr5:108083523-108532542:+,ZNF131->chr5:43065278-43192123:+,zinc_finger_protein_131	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	GALNT2--PSMB1	2	0	GALNT2	6181	chr1:230339036:+	PSMB1	28501	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	GTF2H5--PSMB1	2	0	GTF2H5	2113	chr6:158591570:+	PSMB1	16022	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	HN1L--RAB40C	2	0	HN1L	1101	chr16:1728357:+	RAB40C	18540	chr16:667208:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like,RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	HNRNPH1--PSMD4	2	0	HNRNPH1	4526	chr5:179050038:-	PSMD4	20404	chr1:151236390:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),PSMD4->chr1:151227179-151239955:+,proteasome_26S_subunit,_non-ATPase_4	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	KANSL1--CBS	2	0	KANSL1	4754	chr17:44270189:-	CBS	34816	chr21:44493451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,CBS->chr21:44473301-44497053:-,cystathionine-beta-synthase	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	LRRC41--ARIH1	2	0	LRRC41	5703	chr1:46763235:-	ARIH1	26941	chr15:72855735:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LRRC41->chr1:46726868-46769280:-,leucine_rich_repeat_containing_41,ARIH1->ariadne_RBR_E3_ubiquitin_protein_ligase_1,chr15:72766667-72879692:+	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	PTGFRN--ODF2L	2	0	PTGFRN	1196	chr1:117452874:+	ODF2L	36244	chr1:86820542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,ODF2L->chr1:86814344-86862023:-,outer_dense_fiber_of_sperm_tails_2_like	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	TM2D1--ATL3	2	0	TM2D1	1522	chr1:62190574:-	ATL3	20718	chr11:63426724:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	TM2D1->TM2_domain_containing_1,chr1:62146718-62191095:-,ATL3->atlastin_GTPase_3,chr11:63391559-63439393:-	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	TNFAIP8--CDKL3	2	0	TNFAIP8	1216	chr5:118604602:+	CDKL3	36581	chr5:133541822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	ACBD4--RP11-1149O23.3	1	1	ACBD4	6422	chr17:43216527:+	RP11-1149O23.3	14675	chr8:23085579:+	ONLY_REF_SPLICE	YES	12	24	0.14	0.08	0.0112	0.0112	ACBD4->acyl-CoA_binding_domain_containing_4,chr17:43209967-43221548:+,RP11-1149O23.3->chr8:23081984-23088439:+	HELA_CERVIX	0.08	0.14	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	CHSY3--CTD-2410N18.5	1	1	CHSY3	3444	chr5:129244053:+	CTD-2410N18.5	12251	chr5:133509713:-	ONLY_REF_SPLICE	YES	26	6	0.07	0.25	0.0112	0.0112	CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,CTD-2410N18.5->chr5:133502861-133561762:-	HELA_CERVIX	0.07	0.25	0.0224	TRUE	1	0	0	2	0	TRUE	ACH-001086
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRA2A--TACC2	167	41	TRA2A	1253	chr7:23571408:-	TACC2	39474	chr10:123954555:+	ONLY_REF_SPLICE	YES	267	1	0.44	1	2.067	0.5075	TRA2A->chr7:23544399-23571660:-,transformer_2_alpha_homolog,TACC2->chr10:123748689-124014060:+,transforming_acidic_coiled-coil_containing_protein_2	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	2.5745	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	114	47	IKZF2	5217	chr2:214012432:-	AC072062.1	32529	chr2:215826534:+	ONLY_REF_SPLICE	YES	56	6	0.74	0.96	1.411	0.5817	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.96	1.9927	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC009120.4--RP11-293B20.2	68	21	AC009120.4	4979	chr16:74239804:-	RP11-293B20.2	20192	chr16:33424754:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.8417	0.2599	AC009120.4->chr16:74088050-74330660:-,RP11-293B20.2->chr16:33390406-33425011:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1016	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	24	78	IKZF2	5454	chr2:214012195:-	AC072062.1	32529	chr2:215826534:+	INCL_NON_REF_SPLICE	YES	106	6	0.49	0.94	0.2971	0.9654	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.94	1.2625	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	26	58	IKZF2	5217	chr2:214012432:-	AC072062.1	30207	chr2:215812549:+	ONLY_REF_SPLICE	YES	56	1	0.6	0.99	0.3218	0.7179	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.99	1.0397	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	5	92	IKZF2	5454	chr2:214012195:-	AC072062.1	30207	chr2:215812549:+	INCL_NON_REF_SPLICE	YES	106	1	0.48	0.99	0.0619	1.1387	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.99	1.2006	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	5	82	IKZF2	5454	chr2:214012195:-	AC072062.1	31331	chr2:215825117:+	INCL_NON_REF_SPLICE	YES	106	1	0.45	0.99	0.0619	1.015	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.99	1.0769	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	13	50	IKZF2	5217	chr2:214012432:-	AC072062.1	31331	chr2:215825117:+	INCL_NON_REF_SPLICE	YES	56	1	0.53	0.98	0.1609	0.6189	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.98	0.7798	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	1	92	IKZF2	6637	chr2:213962601:-	AC072062.1	30207	chr2:215812549:+	ONLY_REF_SPLICE	NO	109	1	0.46	0.99	0.0124	1.1387	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.99	1.1511	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRR4--FER1L6	18	11	PRR4	1192	chr12:11324021:-	FER1L6	29030	chr8:124982275:+	ONLY_REF_SPLICE	YES	6	0	0.83	1	0.2228	0.1362	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.359	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRS4L2--RGS6	14	6	DHRS4L2	1394	chr14:24439541:+	RGS6	46486	chr14:73029125:+	ONLY_REF_SPLICE	YES	5	1	0.8	0.95	0.1733	0.0743	DHRS4L2->chr14:24439148-24475617:+,dehydrogenase/reductase_(SDR_family)_member_4_like_2,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.95	0.2476	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC16A--ATP8A2	10	9	CLEC16A	13117	chr16:11114182:+	ATP8A2	44539	chr13:26104137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1238	0.1114	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2352	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4D--RP11-479O16.1	10	7	PDE4D	45091	chr5:58285582:-	RP11-479O16.1	58465	chr5:58112961:-	INCL_NON_REF_SPLICE	YES	100	0	0.15	1	0.1238	0.0866	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.2104	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP3-514A23.2--DHRS4-AS1	7	2	RP3-514A23.2	1799	chr14:73061035:-	DHRS4-AS1	9322	chr14:24410367:-	ONLY_REF_SPLICE	YES	1	49	0.9	0.16	0.0866	0.0248	RP3-514A23.2->chr14:73019288-73061833:-,DHRS4-AS1->DHRS4_antisense_RNA_1,chr14:24407940-24409196:+,chr14:24407940-24458048:-	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.9	0.1114	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT1--AC009120.4	6	4	CNOT1	37789	chr16:58568051:-	AC009120.4	55306	chr16:74240064:-	ONLY_REF_SPLICE	YES	135	6	0.07	0.62	0.0743	0.0495	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,AC009120.4->chr16:74088050-74330660:-	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.62	0.1238	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SP100--APOLD1	5	1	SP100	9390	chr2:231314970:+	APOLD1	45671	chr12:12939843:+	ONLY_REF_SPLICE	YES	58	3	0.09	0.67	0.0619	0.0124	SP100->SP100_nuclear_antigen,chr2:231280657-231408805:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.67	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HECTD1--PRAMEF20	5	0	HECTD1	39396	chr14:31575852:-	PRAMEF20	48309	chr1:13742802:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,PRAMEF20->PRAME_family_member_20,chr1:13736907-13747803:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0619	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SP100--APOLD1	4	4	SP100	9390	chr2:231314970:+	APOLD1	43506	chr12:12879231:+	ONLY_REF_SPLICE	YES	58	7	0.12	0.53	0.0495	0.0495	SP100->SP100_nuclear_antigen,chr2:231280657-231408805:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.53	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--RPLP2	3	0	C17orf76-AS1	1593	chr17:16342728:+	RPLP2	16091	chr11:812535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	C17orf76-AS1->chr17:16342136-16381992:+,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC16A--ATP8A2	3	0	CLEC16A	11936	chr16:11097114:+	ATP8A2	44539	chr13:26104137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-55O6.12--DDX39A	2	0	CTB-55O6.12	1045	chr19:14248035:+	DDX39A	12887	chr19:14524036:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	CTB-55O6.12->chr19:14247991-14282079:+,DDX39A->DEAD-box_helicase_39A,chr19:14519631-14530192:-	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCUN1D2--TFDP1	2	0	DCUN1D2	1286	chr13:114144982:-	TFDP1	18891	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[93746],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	1	0	6	1	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GEN1--FUS	2	0	GEN1	1488	chr2:17935612:+	FUS	28848	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GEN1->GEN1,_Holliday_junction_5'_flap_endonuclease,Oncogene{Bushman},chr2:17935125-17966632:+,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBXN7--NRROS	2	0	UBXN7	1148	chr3:196159198:-	NRROS	30319	chr3:196386623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	UBXN7->UBX_domain_protein_7,chr3:196074533-196159345:-,NRROS->chr3:196366557-196388875:+,negative_regulator_of_reactive_oxygen_species	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBN2--TTC26	1	1	UBN2	3674	chr7:138921843:+	TTC26	44236	chr7:138845694:+	ONLY_REF_SPLICE	NO	2	34	0.5	0.06	0.0124	0.0124	LOCAL_REARRANGEMENT:+:[38370],UBN2->chr7:138915102-138992982:+,ubinuclein_2,TTC26->chr7:138818490-138876732:+,tetratricopeptide_repeat_domain_26	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.5	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000509
SKLU1_LUNG	RN7SL3--RN7SL2	5	614	RN7SL3	1297	chr14:50320336:-	RN7SL2	4414	chr14:50329451:-	INCL_NON_REF_SPLICE	YES	0	425	1	0.59	0.0372	4.5688	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.59	1	4.606	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	4	582	RN7SL3	1246	chr14:50320387:-	RN7SL2	4319	chr14:50329546:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	4.3307	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	4.3605	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	37	441	RN7SL3	1231	chr14:50320402:-	RN7SL2	4348	chr14:50329517:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2753	3.2815	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	3.5568	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	16	493	RN7SL3	1237	chr14:50320396:-	RN7SL2	4354	chr14:50329511:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1191	3.6685	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	3.7876	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	508	RN7SL3	1295	chr14:50320338:-	RN7SL2	4459	chr14:50329406:-	INCL_NON_REF_SPLICE	YES	0	1129	1	0.31	0.0223	3.7801	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.31	1	3.8024	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	4	460	RN7SL3	1231	chr14:50320402:-	RN7SL2	4321	chr14:50329544:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	3.4229	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	3.4527	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	372	RN7SL3	1238	chr14:50320395:-	RN7SL2	4390	chr14:50329475:-	INCL_NON_REF_SPLICE	YES	0	4	1	0.99	0.0223	2.7681	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.99	1	2.7904	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	47	182	RN7SL3	1236	chr14:50320397:-	RN7SL2	4451	chr14:50329414:-	INCL_NON_REF_SPLICE	YES	0	1093	1	0.17	0.3497	1.3543	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.17	1	1.704	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	39	113	RN7SL3	1216	chr14:50320417:-	RN7SL2	4438	chr14:50329427:-	INCL_NON_REF_SPLICE	YES	0	1025	1	0.13	0.2902	0.8408	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.13	1	1.131	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	21	181	RN7SL3	1173	chr14:50320460:-	RN7SL2	4338	chr14:50329527:-	INCL_NON_REF_SPLICE	NO	64	0	0.76	1	0.1563	1.3468	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.76	1	1.5031	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	237	RN7SL3	1193	chr14:50320440:-	RN7SL2	4348	chr14:50329517:-	INCL_NON_REF_SPLICE	YES	40	0	0.86	1	0.0223	1.7635	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.86	1	1.7858	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	4	230	RN7SL3	1246	chr14:50320387:-	RN7SL2	4459	chr14:50329406:-	INCL_NON_REF_SPLICE	YES	0	1129	1	0.17	0.0298	1.7114	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.17	1	1.7412	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	17	168	RN7SL3	1234	chr14:50320399:-	RN7SL2	4449	chr14:50329416:-	INCL_NON_REF_SPLICE	YES	0	1077	1	0.15	0.1265	1.2501	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.15	1	1.3766	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	8	203	RN7SL3	1180	chr14:50320453:-	RN7SL2	4344	chr14:50329521:-	INCL_NON_REF_SPLICE	YES	75	0	0.74	1	0.0595	1.5105	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.74	1	1.57	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	34	90	RN7SL3	1164	chr14:50320469:-	RN7SL2	4371	chr14:50329494:-	INCL_NON_REF_SPLICE	NO	57	1	0.69	0.99	0.253	0.6697	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.69	0.99	0.9227	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	202	RN7SL3	1193	chr14:50320440:-	RN7SL2	4371	chr14:50329494:-	INCL_NON_REF_SPLICE	YES	40	1	0.84	1	0.0223	1.5031	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.84	1	1.5254	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	201	RN7SL3	1179	chr14:50320454:-	RN7SL2	4348	chr14:50329517:-	INCL_NON_REF_SPLICE	YES	69	0	0.75	1	0.0223	1.4957	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.75	1	1.518	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	5	189	RN7SL3	1176	chr14:50320457:-	RN7SL2	4350	chr14:50329515:-	INCL_NON_REF_SPLICE	YES	66	0	0.75	1	0.0372	1.4064	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.75	1	1.4436	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	193	RN7SL3	1236	chr14:50320397:-	RN7SL2	4443	chr14:50329422:-	INCL_NON_REF_SPLICE	YES	0	1040	1	0.16	0.0223	1.4361	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.16	1	1.4584	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	8	169	RN7SL3	1208	chr14:50320425:-	RN7SL2	4403	chr14:50329462:-	INCL_NON_REF_SPLICE	NO	0	16	1	0.92	0.0595	1.2575	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.92	1	1.317	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	6	166	RN7SL3	1206	chr14:50320427:-	RN7SL2	4402	chr14:50329463:-	INCL_NON_REF_SPLICE	YES	0	16	1	0.91	0.0446	1.2352	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.91	1	1.2798	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	AHCY--ASIP	42	2	AHCY	2446	chr20:32891049:-	ASIP	19638	chr20:32856797:+	ONLY_REF_SPLICE	YES	37	0	0.54	1	0.3125	0.0149	LOCAL_INVERSION:-:+:[10924],AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	SKLU1_LUNG	0.54	1	0.3274	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	42	0	RN7SK	1281	chr6:52860698:+	RN7SKP185	4553	chr20:36603662:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3125	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.3125	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	40	0	RN7SL3	1216	chr14:50320417:-	RN7SL2	4515	chr14:50329350:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2976	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.2976	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	4	141	RN7SL3	1180	chr14:50320453:-	RN7SL2	4378	chr14:50329487:-	INCL_NON_REF_SPLICE	YES	75	1	0.66	0.99	0.0298	1.0492	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.66	0.99	1.079	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	37	0	RN7SL3	1215	chr14:50320418:-	RN7SL2	4510	chr14:50329355:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2753	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.2753	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	COQ2--LINC00616	32	12	COQ2	5943	chr4:84193240:-	LINC00616	22819	chr4:139012193:-	ONLY_REF_SPLICE	YES	46	0	0.49	1	0.2381	0.0893	COQ2->chr4:84182689-84206067:-,coenzyme_Q2,_polyprenyltransferase,LINC00616->chr4:138948576-139051863:-,long_intergenic_non-protein_coding_RNA_616	SKLU1_LUNG	0.49	1	0.3274	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	33	0	RN7SK	1302	chr6:52860719:+	RN7SKP185	4564	chr20:36603651:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2456	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.2456	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	FASTKD3--LINC01019	29	9	FASTKD3	5614	chr5:7862936:-	LINC01019	12954	chr5:3531992:-	ONLY_REF_SPLICE	YES	26	0	0.59	1	0.2158	0.067	FASTKD3->FAST_kinase_domains_3,chr5:7859272-7869150:-,LINC01019->chr5:3417266-3536208:-,long_intergenic_non-protein_coding_RNA_1019	SKLU1_LUNG	0.59	1	0.2828	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	6	88	RN7SL3	1194	chr14:50320439:-	RN7SL2	4400	chr14:50329465:-	INCL_NON_REF_SPLICE	YES	25	17	0.79	0.85	0.0446	0.6548	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.79	0.85	0.6994	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	26	0	RN7SL3	1214	chr14:50320419:-	RN7SL2	4510	chr14:50329355:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1935	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.1935	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	19	21	RN7SL3	1179	chr14:50320454:-	RN7SL2	4475	chr14:50329390:-	INCL_NON_REF_SPLICE	YES	69	826	0.37	0.05	0.1414	0.1563	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.05	0.37	0.2977	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	19	0	RN7SK	1274	chr6:52860691:+	RN7SKP185	4540	chr20:36603675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1414	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.1414	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	15	8	RN7SL3	1195	chr14:50320438:-	RN7SL2	4496	chr14:50329369:-	INCL_NON_REF_SPLICE	YES	10	25	0.7	0.48	0.1116	0.0595	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.48	0.7	0.1711	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	54	RN7SL3	1193	chr14:50320440:-	RN7SL2	4418	chr14:50329447:-	INCL_NON_REF_SPLICE	YES	40	598	0.59	0.09	0.0223	0.4018	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.09	0.59	0.4241	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	4	39	RN7SL3	1179	chr14:50320454:-	RN7SL2	4448	chr14:50329417:-	INCL_NON_REF_SPLICE	YES	69	1060	0.38	0.04	0.0298	0.2902	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.04	0.38	0.32	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	HAUS6--DOCK8	11	0	HAUS6	12070	chr9:19076600:-	DOCK8	29453	chr9:271627:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0819	0	HAUS6->HAUS_augmin_like_complex_subunit_6,chr9:19053141-19103117:-,DOCK8->chr9:214854-465259:+,dedicator_of_cytokinesis_8	SKLU1_LUNG	1	1	0.0819	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	6	20	RN7SL3	1209	chr14:50320424:-	RN7SL2	4491	chr14:50329374:-	INCL_NON_REF_SPLICE	NO	0	167	1	0.13	0.0446	0.1488	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.13	1	0.1934	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	11	0	RN7SL3	1195	chr14:50320438:-	RN7SL2	4504	chr14:50329361:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0819	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0819	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	10	0	RN7SL3	1234	chr14:50320399:-	RN7SL2	4533	chr14:50329332:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0744	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0744	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	9	0	RN7SK	1268	chr6:52860685:+	RN7SKP185	4560	chr20:36603655:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.067	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	9	0	RN7SL3	1193	chr14:50320440:-	RN7SL2	4507	chr14:50329358:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.067	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	8	0	RN7SK	1267	chr6:52860684:+	RN7SKP185	4567	chr20:36603648:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0595	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.0595	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	8	0	RN7SL3	1216	chr14:50320417:-	RN7SL2	4510	chr14:50329355:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0595	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0595	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	7	0	RN7SK	1281	chr6:52860698:+	RN7SKP185	4561	chr20:36603654:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.0521	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	7	0	RN7SL3	1216	chr14:50320417:-	RN7SL2	4509	chr14:50329356:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0521	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	COQ2--LINC00616	6	2	COQ2	3735	chr4:84200101:-	LINC00616	22819	chr4:139012193:-	ONLY_REF_SPLICE	YES	31	0	0.21	1	0.0446	0.0149	COQ2->chr4:84182689-84206067:-,coenzyme_Q2,_polyprenyltransferase,LINC00616->chr4:138948576-139051863:-,long_intergenic_non-protein_coding_RNA_616	SKLU1_LUNG	0.21	1	0.0595	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	6	0	RN7SK	1263	chr6:52860680:+	RN7SKP185	4594	chr20:36603621:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.0446	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	6	0	RN7SL3	1284	chr14:50320349:-	RN7SL2	4509	chr14:50329356:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0446	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	5	0	RN7SK	1265	chr6:52860682:+	RN7SKP185	4557	chr20:36603658:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.0372	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	5	0	RN7SL3	1197	chr14:50320436:-	RN7SL2	4503	chr14:50329362:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0372	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	4	0	RN7SL3	1187	chr14:50320446:-	RN7SL2	4503	chr14:50329362:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0298	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	3	RN7SL3	1053	chr14:50320580:-	RN7SL2	4351	chr14:50329514:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0223	0.0223	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0446	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	CCND3--MOCS1	3	1	CCND3	2857	chr6:42016239:-	MOCS1	19003	chr6:39893589:-	ONLY_REF_SPLICE	YES	6	5	0.4	0.44	0.0223	0.0074	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,MOCS1->chr6:39867354-39902290:-,molybdenum_cofactor_synthesis_1	SKLU1_LUNG	0.4	0.44	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	AKR1C1--AKR1E2	3	0	AKR1C1	3369	chr10:4951798:+	AKR1E2	28363	chr10:4872867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	DGD_PARALOGS,GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Brain=[count:3=pct:0.5],Blood=[count:1=pct:0.6]},HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[44542],AKR1C1->aldo-keto_reductase_family_1,_member_C1,chr10:4934796-5025475:+,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	SKLU1_LUNG	1	1	0.0223	TRUE	0	25	0	1	25	TRUE	ACH-000309
SKLU1_LUNG	CTSH--DDX11L1	3	0	CTSH	13931	chr15:79217676:-	DDX11L1	20134	chr1:12010:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	CTSH->Oncogene{Bushman},cathepsin_H,chr15:79213400-79241916:-,DDX11L1->DEAD/H-box_helicase_11_like_1,chr1:11869-14412:+	SKLU1_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	3	0	RN7SK	1208	chr6:52860625:+	RN7SKP185	4552	chr20:36603663:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0223	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.0223	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	3	0	RN7SK	1227	chr6:52860644:+	RN7SKP185	4557	chr20:36603658:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0223	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.0223	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	0	RN7SL3	1290	chr14:50320343:-	RN7SL2	4516	chr14:50329349:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0223	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	CCND3--MOCS1	2	1	CCND3	2857	chr6:42016239:-	MOCS1	17731	chr6:39895194:-	ONLY_REF_SPLICE	YES	6	13	0.33	0.19	0.0149	0.0074	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,MOCS1->chr6:39867354-39902290:-,molybdenum_cofactor_synthesis_1	SKLU1_LUNG	0.19	0.33	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	FASTKD3--LINC01019	2	1	FASTKD3	4140	chr5:7866011:-	LINC01019	12954	chr5:3531992:-	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0149	0.0074	FASTKD3->FAST_kinase_domains_3,chr5:7859272-7869150:-,LINC01019->chr5:3417266-3536208:-,long_intergenic_non-protein_coding_RNA_1019	SKLU1_LUNG	0.27	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	AKR1C1--AKR1E2	2	0	AKR1C1	2295	chr10:4950612:+	AKR1E2	28363	chr10:4872867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0	DGD_PARALOGS,GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Brain=[count:3=pct:0.5],Blood=[count:1=pct:0.6]},HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[44542],AKR1C1->aldo-keto_reductase_family_1,_member_C1,chr10:4934796-5025475:+,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	SKLU1_LUNG	1	1	0.0149	TRUE	0	18	0	1	18	TRUE	ACH-000309
SKLU1_LUNG	FAM208B--GPATCH8	2	0	FAM208B	1338	chr10:5727138:+	GPATCH8	47493	chr17:42483419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0	FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-	SKLU1_LUNG	1	1	0.0149	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	NRD1--TXNDC12	2	0	NRD1	31317	chr1:52257250:-	TXNDC12	38877	chr1:52507269:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0	NRD1->chr1:52254863-52344477:-,TXNDC12->chr1:52485803-52521843:-,thioredoxin_domain_containing_12	SKLU1_LUNG	1	1	0.0149	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	PCGF2--FBXO47	2	0	PCGF2	2622	chr17:36904449:-	FBXO47	20078	chr17:37101389:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0	PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,FBXO47->F-box_protein_47,chr17:37092685-37123655:-	SKLU1_LUNG	1	1	0.0149	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	PIK3R1--PLK2	2	0	PIK3R1	13465	chr5:67588189:+	PLK2	27024	chr5:57754919:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0	PIK3R1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:67511548-67597649:+,phosphoinositide-3-kinase_regulatory_subunit_1,PLK2->chr5:57749809-57756087:-,polo_like_kinase_2	SKLU1_LUNG	1	1	0.0149	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	SNHG6--MTCH2	2	0	SNHG6	1962	chr8:67837672:-	MTCH2	16111	chr11:47647293:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0	SNHG6->chr8:67833919-67838633:-,small_nucleolar_RNA_host_gene_6,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	SKLU1_LUNG	1	1	0.0149	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	NKTR--CNOT8	1	1	NKTR	15451	chr3:42674315:+	CNOT8	34665	chr5:154242767:+	ONLY_REF_SPLICE	NO	17	14	0.11	0.12	0.0074	0.0074	NKTR->chr3:42642106-42690227:+,natural_killer_cell_triggering_receptor,CNOT8->CCR4-NOT_transcription_complex_subunit_8,chr5:154237113-154256353:+	SKLU1_LUNG	0.11	0.12	0.0148	TRUE	0	0	0	1	0	TRUE	ACH-000309
CALU3_LUNG	CDC6--KRT223P	72	49	CDC6	4518	chr17:38447920:+	KRT223P	15582	chr17:38877329:-	ONLY_REF_SPLICE	YES	647	0	0.16	1	0.723	0.492	CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,KRT223P->chr17:38873487-38878184:-,keratin_223_pseudogene	CALU3_LUNG	0.16	1	1.215	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	CDC6--KRT223P	69	37	CDC6	4518	chr17:38447920:+	KRT223P	16883	chr17:38876028:-	ONLY_REF_SPLICE	YES	647	25	0.14	0.81	0.6929	0.3715	CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,KRT223P->chr17:38873487-38878184:-,keratin_223_pseudogene	CALU3_LUNG	0.14	0.81	1.0644	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	SRPK2--RP13-444H2.1	21	4	SRPK2	9685	chr7:104844075:-	RP13-444H2.1	31996	chr13:52915028:+	ONLY_REF_SPLICE	YES	8	0	0.76	1	0.2109	0.0402	SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,RP13-444H2.1->chr13:52908430-52916031:+	CALU3_LUNG	0.76	1	0.2511	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	PPARD--HCG20	15	3	PPARD	4535	chr6:35378994:+	HCG20	17372	chr6:30756468:+	ONLY_REF_SPLICE	YES	14	0	0.56	1	0.1506	0.0301	PPARD->Oncogene{Bushman},chr6:35310335-35395968:+,peroxisome_proliferator_activated_receptor_delta,HCG20->HLA_complex_group_20_(non-protein_coding),chr6:30734602-30760027:+	CALU3_LUNG	0.56	1	0.1807	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	MAP3K13--MSL2	10	1	MAP3K13	6236	chr3:185046750:+	MSL2	37433	chr3:135871580:-	ONLY_REF_SPLICE	YES	2	56	0.85	0.16	0.1004	0.01	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	CALU3_LUNG	0.16	0.85	0.1104	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	ZBTB11-AS1--RP11-221J22.1	6	5	ZBTB11-AS1	1843	chr3:101396116:+	RP11-221J22.1	9057	chr3:101713405:+	INCL_NON_REF_SPLICE	YES	16	0	0.41	1	0.0602	0.0502	ZBTB11-AS1->ZBTB11_antisense_RNA_1,chr3:101395274-101398061:+,RP11-221J22.1->chr3:101659703-101716770:+	CALU3_LUNG	0.41	1	0.1104	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	TATDN1--RP11-103H7.1	5	8	TATDN1	9771	chr8:125520715:-	RP11-103H7.1	19682	chr8:127499792:+	ONLY_REF_SPLICE	YES	108	0	0.11	1	0.0502	0.0803	TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,RP11-103H7.1->chr8:127486434-127504841:+	CALU3_LUNG	0.11	1	0.1305	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	MAP3K13--MSL2	3	4	MAP3K13	7786	chr3:185081156:+	MSL2	37433	chr3:135871580:-	ONLY_REF_SPLICE	YES	2	56	0.78	0.11	0.0301	0.0402	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	CALU3_LUNG	0.11	0.78	0.0703	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	ERBB2--MYL6	3	0	ERBB2	16192	chr17:37872192:+	MYL6	33396	chr12:56555171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	CALU3_LUNG	1	1	0.0301	TRUE	0	3	0	1	1	TRUE	ACH-000392
CALU3_LUNG	ERBB2--STARD3	3	0	ERBB2	16192	chr17:37872192:+	STARD3	39973	chr17:37818504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	LOCAL_REARRANGEMENT:+:[24430],ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+	CALU3_LUNG	1	1	0.0301	TRUE	0	1	0	1	0	TRUE	ACH-000392
CALU3_LUNG	CD2AP--AQP9	2	0	CD2AP	4876	chr6:47512442:+	AQP9	29797	chr15:58458872:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CD2AP->CD2-associated_protein,chr6:47445525-47594999:+,AQP9->aquaporin_9,chr15:58430368-58478110:+	CALU3_LUNG	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	BCL7A--E2F8	1	1	BCL7A	7109	chr12:122481959:+	E2F8	25329	chr11:19247411:-	ONLY_REF_SPLICE	YES	11	25	0.15	0.07	0.01	0.01	BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+,E2F8->E2F_transcription_factor_8,chr11:19245610-19263167:-	CALU3_LUNG	0.07	0.15	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	PSD3--SH2D4A	1	1	PSD3	5897	chr8:18793544:-	SH2D4A	48235	chr8:19190466:+	ONLY_REF_SPLICE	YES	1	34	0.67	0.06	0.01	0.01	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,SH2D4A->SH2_domain_containing_4A,chr8:19171128-19253729:+	CALU3_LUNG	0.06	0.67	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000392
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ3	257	29	TRAV6	1563	chr14:22237291:+	TRAJ3	4600	chr14:23012129:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.7213	0.3071	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	3.0284	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV8-4--TRAJ3	224	34	TRAV8-4	1602	chr14:22363214:+	TRAJ3	4608	chr14:23012131:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.3719	0.36	HGNC_GENEFAM,TRAV8-4->T_cell_receptor_alpha_variable_8-4,chr14:22362613-22363210:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.7319	TRUE	0	1	0	1	1	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544L4.1--TBC1D7	71	14	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5177	chr6:13328750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7518	0.1482	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9	TRUE	0	0	0	5	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544L4.1--TBC1D7	60	14	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5183	chr6:13328744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6353	0.1482	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7835	TRUE	0	0	0	5	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544L4.1--TBC1D7	60	13	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5189	chr6:13328738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6353	0.1377	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.773	TRUE	0	0	0	5	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBS1L--RP11-707M1.1	11	6	HBS1L	5766	chr6:135360711:-	RP11-707M1.1	37218	chr11:49805375:+	ONLY_REF_SPLICE	YES	83	0	0.17	1	0.1165	0.0635	HBS1L->HBS1_like_translational_GTPase,chr6:135281516-135424194:-,RP11-707M1.1->chr11:49580098-49831971:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.18	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--UBB	7	0	RPS3	2292	chr11:75111821:+	UBB	14087	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0741	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UBB->chr17:16284112-16286059:+,ubiquitin_B	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0741	TRUE	0	0	0	6	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF519--ANKRD20A5P	3	0	ZNF519	1216	chr18:14132274:-	ANKRD20A5P	46156	chr18:14234686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_INVERSION:-:+:[46607],ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,ANKRD20A5P->ankyrin_repeat_domain_20_family_member_A5,_pseudogene,chr18:14179096-14249455:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC009403.2--CROT	2	0	AC009403.2	2738	chr7:155436162:-	CROT	21250	chr7:87020905:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	AC009403.2->chr7:155403925-155437899:-,CROT->carnitine_O-octanoyltransferase,chr7:86974997-87029111:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000320.7--RUNX1	2	0	AP000320.7	1154	chr21:35446045:+	RUNX1	34483	chr21:36259393:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	AP000320.7->chr21:35445892-35732332:+,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--FAM120AOS	2	0	CHD2	6529	chr15:93444529:+	FAM120AOS	62843	chr9:96212881:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx&tcga_normals:1/3694=0.03%,CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,FAM120AOS->chr9:96208776-96215874:-,family_with_sequence_similarity_120A_opposite_strand	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	2	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPA2B1--IVNS1ABP	2	0	HNRNPA2B1	1958	chr7:26240192:-	IVNS1ABP	21060	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	4	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLEKHB2--TXNL4A	2	0	PLEKHB2	1552	chr2:131862971:+	TXNL4A	28943	chr18:77737701:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	PLEKHB2->chr2:131862420-132111282:+,pleckstrin_homology_domain_containing_B2,TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--STAT5B	2	0	RCC1	2920	chr1:28835417:+	STAT5B	27276	chr17:40369482:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCCD1--SON	2	0	RCCD1	6879	chr15:91505004:+	SON	23594	chr21:34931536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RCCD1->RCC1_domain_containing_1,chr15:91498100-91506349:+,SON->SON_DNA_binding_protein,chr21:34914924-34949812:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-941N14.1--HNRNPH3	2	0	RP13-941N14.1	1472	chr12:122019168:+	HNRNPH3	11357	chr10:70100931:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RP13-941N14.1->chr12:122018697-122031409:+,HNRNPH3->chr10:70090931-70102948:+,heterogeneous_nuclear_ribonucleoprotein_H3	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--KIAA1033	2	0	UPF3A	5319	chr13:115057267:+	KIAA1033	26293	chr12:105534072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,KIAA1033->KIAA1033,chr12:105501102-105562912:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--MICU2	2	0	ZNF738	7035	chr19:21558766:+	MICU2	27459	chr13:22069457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,MICU2->chr13:22066836-22178353:-,mitochondrial_calcium_uptake_2	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	2	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF85--SRSF7	2	0	ZNF85	3219	chr19:21117853:+	SRSF7	18172	chr2:38975795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ZNF85->chr19:21106028-21133503:+,zinc_finger_protein_85,SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYL6--HOXD13	2	0	MYL6	2462	chr12:56553406:+	HOXD13	10926	chr2:176959208:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,HOXD13->Oncogene{Bushman},chr2:176957619-176960666:+,homeobox_D13	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NASP--PSMD3	2	0	NASP	15837	chr1:46078920:+	PSMD3	33907	chr17:38152436:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NASP->chr1:46049518-46084566:+,nuclear_autoantigenic_sperm_protein,PSMD3->chr17:38137050-38154213:+,proteasome_26S_subunit,_non-ATPase_3	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-125I3.2--H2AFV	2	0	RP1-125I3.2	1263	chr1:26186366:+	H2AFV	10253	chr7:44874161:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RP1-125I3.2->chr1:26186104-26189911:+,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RSRC1--MFSD1	2	0	RSRC1	9720	chr3:157921034:+	MFSD1	36592	chr3:158537438:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MFSD1->chr3:158449987-158547508:+,major_facilitator_superfamily_domain_containing_1	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000112
HDQP1_BREAST	FASN--ARL16	517	189	FASN	6655	chr17:80049338:-	ARL16	23551	chr17:79650183:-	INCL_NON_REF_SPLICE	YES	13	68	0.98	0.91	5.6215	2.0551	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,ARL16->ADP_ribosylation_factor_like_GTPase_16,chr17:79648204-79650954:-	HDQP1_BREAST	0.91	0.98	7.6766	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	FASN--ARL16	109	85	FASN	5662	chr17:80050331:-	ARL16	23578	chr17:79650156:-	ONLY_REF_SPLICE	YES	135	68	0.59	0.74	1.1852	0.9242	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,ARL16->ADP_ribosylation_factor_like_GTPase_16,chr17:79648204-79650954:-	HDQP1_BREAST	0.59	0.74	2.1094	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	IFIT3--LIPJ	118	27	IFIT3	1185	chr10:91087835:+	LIPJ	9154	chr10:90347023:+	ONLY_REF_SPLICE	YES	24	3	0.86	0.98	1.2831	0.2936	IFIT3->chr10:91087651-91100728:+,interferon_induced_protein_with_tetratricopeptide_repeats_3,LIPJ->chr10:90346510-90366733:+,lipase_family_member_J	HDQP1_BREAST	0.86	0.98	1.5767	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	DHX36--KCNAB1	109	5	DHX36	1324	chr3:154041963:-	KCNAB1	57083	chr3:156249198:+	ONLY_REF_SPLICE	YES	5	0	0.96	1	1.1852	0.0544	DHX36->DEAH-box_helicase_36,chr3:153990335-154042286:-,KCNAB1->chr3:155755490-156256545:+,potassium_voltage-gated_channel_subfamily_A_member_regulatory_beta_subunit_1	HDQP1_BREAST	0.96	1	1.2396	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	BRPF1--CPNE9	80	77	BRPF1	1410	chr3:9773822:+	CPNE9	25367	chr3:9760159:+	ONLY_REF_SPLICE	YES	10	0	0.94	1	0.8699	0.8372	LOCAL_REARRANGEMENT:+:[1821],BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+,CPNE9->chr3:9745491-9771592:+,copine_family_member_9	HDQP1_BREAST	0.94	1	1.7071	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	FASN--ARL16	54	62	FASN	5662	chr17:80050331:-	ARL16	24029	chr17:79649705:-	ONLY_REF_SPLICE	YES	135	78	0.46	0.6	0.5872	0.6741	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,ARL16->ADP_ribosylation_factor_like_GTPase_16,chr17:79648204-79650954:-	HDQP1_BREAST	0.46	0.6	1.2613	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	BRPF1--CPNE9	44	46	BRPF1	1410	chr3:9773822:+	CPNE9	26495	chr3:9767633:+	ONLY_REF_SPLICE	YES	10	20	0.9	0.82	0.4784	0.5002	LOCAL_REARRANGEMENT:+:[1821],BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+,CPNE9->chr3:9745491-9771592:+,copine_family_member_9	HDQP1_BREAST	0.82	0.9	0.9786	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	NBEAL1--RUFY4	45	15	NBEAL1	40684	chr2:204031020:+	RUFY4	76283	chr2:218937097:+	ONLY_REF_SPLICE	YES	3	0	0.95	1	0.4893	0.1631	NBEAL1->chr2:203879602-204091101:+,neurobeachin_like_1,RUFY4->RUN_and_FYVE_domain_containing_4,chr2:218899683-218955304:+	HDQP1_BREAST	0.95	1	0.6524	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MSI2--SCPEP1	43	6	MSI2	5660	chr17:55339553:+	SCPEP1	60433	chr17:55078216:+	ONLY_REF_SPLICE	YES	59	238	0.45	0.17	0.4676	0.0652	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,SCPEP1->chr17:55055466-55084129:+,serine_carboxypeptidase_1	HDQP1_BREAST	0.17	0.45	0.5328	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	PARD3--AL109761.5	26	16	PARD3	3733	chr10:34805907:-	AL109761.5	39324	chr21:19182812:+	ONLY_REF_SPLICE	YES	74	0	0.36	1	0.2827	0.174	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,AL109761.5->chr21:19165805-19183162:+	HDQP1_BREAST	0.36	1	0.4567	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	EVPL--SRP68	25	10	EVPL	1352	chr17:74023182:-	SRP68	30198	chr17:74046607:-	ONLY_REF_SPLICE	YES	45	108	0.44	0.24	0.2718	0.1087	LOCAL_REARRANGEMENT:-:[11651],EVPL->chr17:74000583-74023533:-,envoplakin,SRP68->chr17:74035184-74068734:-,signal_recognition_particle_68	HDQP1_BREAST	0.24	0.44	0.3805	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	BRPF1--CPNE9	7	79	BRPF1	1410	chr3:9773822:+	CPNE9	25342	chr3:9760134:+	INCL_NON_REF_SPLICE	YES	10	0	0.9	1	0.0761	0.859	LOCAL_REARRANGEMENT:+:[1821],BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+,CPNE9->chr3:9745491-9771592:+,copine_family_member_9	HDQP1_BREAST	0.9	1	0.9351	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	BRPF1--CPNE9	3	78	BRPF1	1959	chr3:9774371:+	CPNE9	25367	chr3:9760159:+	ONLY_REF_SPLICE	YES	11	0	0.88	1	0.0326	0.8481	LOCAL_REARRANGEMENT:+:[1821],BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+,CPNE9->chr3:9745491-9771592:+,copine_family_member_9	HDQP1_BREAST	0.88	1	0.8807	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	IQGAP3--RP11-284F21.7	20	3	IQGAP3	8478	chr1:156530726:-	RP11-284F21.7	34894	chr1:156616946:-	ONLY_REF_SPLICE	YES	55	21	0.29	0.52	0.2175	0.0326	LOCAL_REARRANGEMENT:-:[73903],IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-,RP11-284F21.7->chr1:156616299-156631216:-	HDQP1_BREAST	0.29	0.52	0.2501	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	TBCB--WDR62	16	5	TBCB	7575	chr19:36612620:+	WDR62	37456	chr19:36590301:+	ONLY_REF_SPLICE	YES	132	15	0.14	0.58	0.174	0.0544	LOCAL_REARRANGEMENT:+:[9183],TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B,WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+	HDQP1_BREAST	0.14	0.58	0.2284	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	AXIN1--DNAJC15	17	0	AXIN1	1305	chr16:402369:-	DNAJC15	20515	chr13:43639822:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1848	0	AXIN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},axin_1,chr16:337440-402673:-,DNAJC15->DnaJ_heat_shock_protein_family_(Hsp40)_member_C15,chr13:43597339-43683045:+	HDQP1_BREAST	1	1	0.1848	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	CTD-2314B22.3--RP11-536C10.19	11	0	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1196	0	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	HDQP1_BREAST	1	1	0.1196	TRUE	0	2	0	9	2	TRUE	ACH-000643
HDQP1_BREAST	GAN--BCMO1	10	2	GAN	1329	chr16:81348885:+	BCMO1	34879	chr16:81301513:+	ONLY_REF_SPLICE	YES	0	7	1	0.63	0.1087	0.0217	LOCAL_REARRANGEMENT:+:[23810],GAN->chr16:81348557-81424489:+,gigaxonin,BCMO1->chr16:81272053-81324747:+	HDQP1_BREAST	0.63	1	0.1304	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	IFIT3--LIPJ	10	1	IFIT3	1185	chr10:91087835:+	LIPJ	17130	chr10:90362333:+	ONLY_REF_SPLICE	YES	24	31	0.31	0.26	0.1087	0.0109	IFIT3->chr10:91087651-91100728:+,interferon_induced_protein_with_tetratricopeptide_repeats_3,LIPJ->chr10:90346510-90366733:+,lipase_family_member_J	HDQP1_BREAST	0.26	0.31	0.1196	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	PIGU--NCOA6	9	4	PIGU	2216	chr20:33244984:-	NCOA6	47656	chr20:33285050:-	ONLY_REF_SPLICE	YES	101	0	0.11	1	0.0979	0.0435	LOCAL_REARRANGEMENT:-:[19812],PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	HDQP1_BREAST	0.11	1	0.1414	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	PIGU--NCOA6	8	4	PIGU	2216	chr20:33244984:-	NCOA6	47659	chr20:33285047:-	ONLY_REF_SPLICE	YES	101	0	0.11	1	0.087	0.0435	LOCAL_REARRANGEMENT:-:[19812],PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	HDQP1_BREAST	0.11	1	0.1305	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	GAN--BCMO1	8	3	GAN	1329	chr16:81348885:+	BCMO1	33731	chr16:81298245:+	ONLY_REF_SPLICE	YES	0	3	1	0.79	0.087	0.0326	LOCAL_REARRANGEMENT:+:[23810],GAN->chr16:81348557-81424489:+,gigaxonin,BCMO1->chr16:81272053-81324747:+	HDQP1_BREAST	0.79	1	0.1196	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	IGHMBP2--SPTBN2	7	4	IGHMBP2	7513	chr11:68685351:+	SPTBN2	24719	chr11:66488733:-	ONLY_REF_SPLICE	YES	30	7	0.27	0.61	0.0761	0.0435	IGHMBP2->chr11:68671310-68708070:+,immunoglobulin_mu_binding_protein_2,SPTBN2->chr11:66452719-66496697:-,spectrin_beta,_non-erythrocytic_2	HDQP1_BREAST	0.27	0.61	0.1196	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	EML4--PKDCC	7	3	EML4	1287	chr2:42396776:+	PKDCC	37933	chr2:42282426:+	ONLY_REF_SPLICE	YES	38	0	0.21	1	0.0761	0.0326	EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,PKDCC->chr2:42275160-42285668:+,protein_kinase_domain_containing,_cytoplasmic	HDQP1_BREAST	0.21	1	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	ZNF407--DMD	6	4	ZNF407	7927	chr18:72353078:+	DMD	42831	chrX:32717410:-	ONLY_REF_SPLICE	YES	6	0	0.62	1	0.0652	0.0435	ZNF407->chr18:72265106-72777627:+,zinc_finger_protein_407,DMD->chrX:31115794-33357558:-,dystrophin	HDQP1_BREAST	0.62	1	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	BRPF1--CPNE9	2	19	BRPF1	1410	chr3:9773822:+	CPNE9	27211	chr3:9768349:+	ONLY_REF_SPLICE	YES	10	51	0.68	0.29	0.0217	0.2066	LOCAL_REARRANGEMENT:+:[1821],BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+,CPNE9->chr3:9745491-9771592:+,copine_family_member_9	HDQP1_BREAST	0.29	0.68	0.2283	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	CTD-2015H6.3--DHFR	6	2	CTD-2015H6.3	2387	chr5:79781285:-	DHFR	10792	chr5:79933828:-	ONLY_REF_SPLICE	YES	44	75	0.15	0.1	0.0652	0.0217	CTD-2015H6.3->chr5:79778112-79783882:-,DHFR->chr5:79922047-79950802:-,dihydrofolate_reductase	HDQP1_BREAST	0.1	0.15	0.0869	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	BRPF1--CPNE9	4	8	BRPF1	1410	chr3:9773822:+	CPNE9	28997	chr3:9771191:+	ONLY_REF_SPLICE	YES	10	37	0.55	0.24	0.0435	0.087	LOCAL_REARRANGEMENT:+:[1821],BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+,CPNE9->chr3:9745491-9771592:+,copine_family_member_9	HDQP1_BREAST	0.24	0.55	0.1305	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	LINC01036--CHODL-AS1	6	0	LINC01036	1105	chr1:187062078:+	CHODL-AS1	9006	chr21:19212970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0652	0	HGNC_GENEFAM,LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,CHODL-AS1->CHODL_antisense_RNA_1,chr21:19207333-19257925:-	HDQP1_BREAST	1	1	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	TBCB--WDR62	4	6	TBCB	8030	chr19:36613075:+	WDR62	37456	chr19:36590301:+	ONLY_REF_SPLICE	YES	141	15	0.07	0.4	0.0435	0.0652	LOCAL_REARRANGEMENT:+:[9183],TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B,WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+	HDQP1_BREAST	0.07	0.4	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	DMD--SIPA1L2	4	2	DMD	18991	chrX:32662249:-	SIPA1L2	107644	chr1:232651354:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0435	0.0217	DMD->chrX:31115794-33357558:-,dystrophin,SIPA1L2->chr1:232533711-232697304:-,signal_induced_proliferation_associated_1_like_2	HDQP1_BREAST	1	1	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	NBEAL1--RUFY4	3	6	NBEAL1	40684	chr2:204031020:+	RUFY4	77152	chr2:218937966:+	ONLY_REF_SPLICE	YES	3	10	0.75	0.47	0.0326	0.0652	NBEAL1->chr2:203879602-204091101:+,neurobeachin_like_1,RUFY4->RUN_and_FYVE_domain_containing_4,chr2:218899683-218955304:+	HDQP1_BREAST	0.47	0.75	0.0978	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	RCC1--CTD-2354A18.1	4	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0435	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	HDQP1_BREAST	1	1	0.0435	TRUE	0	1	0	7	0	TRUE	ACH-000643
HDQP1_BREAST	LINC01036--CHODL-AS1	3	0	LINC01036	1105	chr1:187062078:+	CHODL-AS1	9019	chr21:19212957:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	HGNC_GENEFAM,LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,CHODL-AS1->CHODL_antisense_RNA_1,chr21:19207333-19257925:-	HDQP1_BREAST	1	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	DHX36--KCNAB1	2	2	DHX36	1324	chr3:154041963:-	KCNAB1	58172	chr3:156254447:+	ONLY_REF_SPLICE	YES	5	4	0.44	0.5	0.0217	0.0217	DHX36->DEAH-box_helicase_36,chr3:153990335-154042286:-,KCNAB1->chr3:155755490-156256545:+,potassium_voltage-gated_channel_subfamily_A_member_regulatory_beta_subunit_1	HDQP1_BREAST	0.44	0.5	0.0434	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	C9orf147--PTBP3	2	1	C9orf147	1815	chr9:115248670:-	PTBP3	21885	chr9:114990752:-	ONLY_REF_SPLICE	YES	0	13	1	0.19	0.0217	0.0109	C9orf147->chr9:115196096-115249484:-,chromosome_9_open_reading_frame_147,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	HDQP1_BREAST	0.19	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	NUPL2--SRSF1	2	0	NUPL2	3987	chr7:23226765:+	SRSF1	16836	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx_v2:{count=2;pct=0.02%;dist=Colon_-_Sigmoid=1,Colon_-_Transverse=1},NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	HDQP1_BREAST	1	1	0.0217	TRUE	1	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	RP11-296O14.3--TNFSF4	2	0	RP11-296O14.3	1985	chr1:173429517:-	TNFSF4	11987	chr1:173157708:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	RP11-296O14.3->chr1:173386932-173430501:-,TNFSF4->chr1:173152873-173176452:-,tumor_necrosis_factor_superfamily_member_4	HDQP1_BREAST	1	1	0.0217	TRUE	0	3	0	3	3	TRUE	ACH-000643
HDQP1_BREAST	SNHG1--XPNPEP1	2	0	SNHG1	1491	chr11:62622896:-	XPNPEP1	25343	chr10:111635357:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	SNHG1->chr11:62619460-62623386:-,small_nucleolar_RNA_host_gene_1,XPNPEP1->X-prolyl_aminopeptidase_(aminopeptidase_P)_1,_soluble,chr10:111624524-111683311:-	HDQP1_BREAST	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	PARD3--CHODL-AS1	1	2	PARD3	3733	chr10:34805907:-	CHODL-AS1	38368	chr21:19212970:-	ONLY_REF_SPLICE	YES	74	0	0.04	1	0.0109	0.0217	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,CHODL-AS1->CHODL_antisense_RNA_1,chr21:19207333-19257925:-	HDQP1_BREAST	0.04	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	C9orf147--PTBP3	1	1	C9orf147	1815	chr9:115248670:-	PTBP3	20851	chr9:114993693:-	ONLY_REF_SPLICE	YES	0	8	1	0.2	0.0109	0.0109	C9orf147->chr9:115196096-115249484:-,chromosome_9_open_reading_frame_147,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	HDQP1_BREAST	0.2	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000643
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAG6--SLC44A4	313	232	BAG6	2050	chr6:31619433:-	SLC44A4	25651	chr6:31833561:-	ONLY_REF_SPLICE	YES	440	5	0.55	0.99	3.6234	2.6857	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},BAG6->BCL2_associated_athanogene_6,chr6:31606805-31620482:-,SLC44A4->Oncogene{Bushman},chr6:31830969-31846823:-,solute_carrier_family_44_member_4	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.99	6.3091	TRUE	0	0	0	2	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	238	154	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	46	31	0.89	0.93	2.7552	1.7828	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.93	4.538	TRUE	0	2	1	16	2	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--XKR3	191	90	NUP214	35067	chr9:134074402:+	XKR3	49819	chr22:17288973:-	ONLY_REF_SPLICE	YES	295	0	0.49	1	2.2111	1.0419	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Liver=1,Adipose_-_Subcutaneous=1,Brain_-_Cerebellum=1},Mitelman{Heart=2},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,XKR3->XK_related_3,chr22:17264302-17302589:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	1	3.253	TRUE	1	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	56	65	UPF3A	8900	chr13:115070388:+	CDC16	30412	chr13:115037659:+	INCL_NON_REF_SPLICE	YES	182	166	0.4	0.42	0.6483	0.7525	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.42	1.4008	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	1	154	BCR	21553	chr22:23632600:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	46	30	0.77	0.84	0.0116	1.7828	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.84	1.7944	TRUE	0	2	1	16	2	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAG6--SLC44A4	8	110	BAG6	2050	chr6:31619433:-	SLC44A4	25834	chr6:31833378:-	ONLY_REF_SPLICE	YES	440	40	0.21	0.75	0.0926	1.2734	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},BAG6->BCL2_associated_athanogene_6,chr6:31606805-31620482:-,SLC44A4->Oncogene{Bushman},chr6:31830969-31846823:-,solute_carrier_family_44_member_4	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.75	1.366	TRUE	0	0	0	2	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--XKR3	7	90	NUP214	35067	chr9:134074402:+	XKR3	49816	chr22:17288976:-	INCL_NON_REF_SPLICE	YES	295	0	0.25	1	0.081	1.0419	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Liver=1,Adipose_-_Subcutaneous=1,Brain_-_Cerebellum=1},Mitelman{Heart=2},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,XKR3->XK_related_3,chr22:17264302-17302589:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	1.1229	TRUE	1	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C16orf87--ORC6	15	13	C16orf87	2874	chr16:46858298:-	ORC6	18877	chr16:46727005:+	ONLY_REF_SPLICE	YES	66	173	0.3	0.14	0.1736	0.1505	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:-:+:[98213],C16orf87->chr16:46830519-46865323:-,chromosome_16_open_reading_frame_87,ORC6->chr16:46723555-46732306:+,origin_recognition_complex_subunit_6	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.3	0.3241	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	11	28	UPF3A	8900	chr13:115070388:+	CDC16	30506	chr13:115037753:+	INCL_NON_REF_SPLICE	YES	182	105	0.18	0.27	0.1273	0.3241	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.27	0.4514	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IMMP2L--DOCK4	15	7	IMMP2L	4976	chr7:111127294:-	DOCK4	58674	chr7:111409733:-	ONLY_REF_SPLICE	YES	135	1	0.14	0.96	0.1736	0.081	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.96	0.2546	TRUE	0	0	0	2	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	5	44	UPF3A	8863	chr13:115070351:+	CDC16	30412	chr13:115037659:+	INCL_NON_REF_SPLICE	YES	182	166	0.21	0.23	0.0579	0.5094	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.23	0.5673	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	4	CCDC26	6922	chr8:130365050:-	LINC00977	12110	chr8:130235615:-	INCL_NON_REF_SPLICE	YES	127	0	0.06	1	0.0463	0.0463	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0926	TRUE	0	0	0	4	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	3	2	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0347	0.0232	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.0579	TRUE	0	0	0	16	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1958--HSDL2	3	1	KIAA1958	6984	chr9:115408102:+	HSDL2	22364	chr9:115166275:+	ONLY_REF_SPLICE	YES	3	6	0.57	0.4	0.0347	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[14437],KIAA1958->KIAA1958,chr9:115249127-115431677:+,HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.57	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAG6--SLC44A4	3	0	BAG6	2050	chr6:31619433:-	SLC44A4	27687	chr6:31831525:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},BAG6->BCL2_associated_athanogene_6,chr6:31606805-31620482:-,SLC44A4->Oncogene{Bushman},chr6:31830969-31846823:-,solute_carrier_family_44_member_4	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-3116E22.6--ZNF274	3	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0347	TRUE	0	0	0	13	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC27A4--RP11-27I1.4	2	2	SLC27A4	1193	chr9:131103117:+	RP11-27I1.4	16643	chr9:123560853:+	ONLY_REF_SPLICE	NO	23	17	0.15	0.19	0.0232	0.0232	SLC27A4->chr9:131102925-131123749:+,solute_carrier_family_27_member_4,RP11-27I1.4->chr9:123555829-123561848:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.19	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP70--FAIM	2	1	CEP70	6110	chr3:138289876:-	FAIM	28101	chr3:138340249:+	ONLY_REF_SPLICE	YES	81	7	0.04	0.3	0.0232	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:-:+:[14068],CEP70->centrosomal_protein_70,chr3:138213186-138313380:-,FAIM->Fas_apoptotic_inhibitory_molecule,Oncogene{Bushman},chr3:138327448-138352218:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.3	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPED1--JMJD1C	2	0	CPED1	11568	chr7:120716702:+	JMJD1C	52259	chr10:64960437:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CPED1->cadherin_like_and_PC-esterase_domain_containing_1,chr7:120628731-120937498:+,JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TOPBP1--PTBP2	2	0	TOPBP1	25989	chr3:133327379:-	PTBP2	42886	chr1:97270356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TOPBP1->chr3:133317019-133380737:-,topoisomerase_(DNA)_II_binding_protein_1,PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZMYM4--SFT2D1	2	0	ZMYM4	3227	chr1:35791006:+	SFT2D1	36526	chr6:166743735:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,SFT2D1->SFT2_domain_containing_1,chr6:166733216-166756079:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	1	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	91	0	0.02	1	0.0116	0.0116	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0232	TRUE	0	3	0	7	3	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-964N17.1--LRCH2	1	1	RP5-964N17.1	1026	chrX:113181481:-	LRCH2	14547	chrX:114398346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0116	RP5-964N17.1->chrX:112859587-113181506:-,LRCH2->chrX:114345185-114468635:-,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_2	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000551
TE1_OESOPHAGUS	ITGA2--ITGA1	512	128	ITGA2	30849	chr5:52388438:+	ITGA1	79883	chr5:52252152:+	INCL_NON_REF_SPLICE	YES	284	1	0.69	1	4.8075	1.2019	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[30116],ITGA2->chr5:52285156-52390609:+,integrin_subunit_alpha_2,ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1	TE1_OESOPHAGUS	0.69	1	6.0094	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	VMP1--CLTC	156	61	VMP1	7938	chr17:57816308:+	CLTC	24482	chr17:57721637:+	ONLY_REF_SPLICE	YES	115	407	0.65	0.35	1.4648	0.5728	{Klijn_CCL:Lung=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[10882],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	TE1_OESOPHAGUS	0.35	0.65	2.0376	TRUE	0	1	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	DIDO1--FRG1	115	14	DIDO1	1157	chr20:61569148:-	FRG1	31269	chr4:190864357:+	ONLY_REF_SPLICE	YES	8	49	0.94	0.72	1.0798	0.1315	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,FRG1->FSHD_region_gene_1,chr4:190861943-190884359:+	TE1_OESOPHAGUS	0.72	0.94	1.2113	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	CCDC91--RP11-993B23.3	31	7	CCDC91	12544	chr12:28412375:+	RP11-993B23.3	34818	chr12:28111452:+	INCL_NON_REF_SPLICE	YES	26	0	0.59	1	0.2911	0.0657	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RP11-993B23.3->chr12:28111450-28122746:+	TE1_OESOPHAGUS	0.59	1	0.3568	TRUE	0	2	0	1	2	TRUE	ACH-000647
TE1_OESOPHAGUS	SIRT1--MYPN	25	12	SIRT1	12301	chr10:69676366:+	MYPN	20217	chr10:69881195:+	INCL_NON_REF_SPLICE	YES	32	10	0.54	0.79	0.2347	0.1127	SIRT1->Oncogene{Bushman},chr10:69644427-69678147:+,sirtuin_1,MYPN->chr10:69865912-69971774:+,myopalladin	TE1_OESOPHAGUS	0.54	0.79	0.3474	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	PIK3C2A--USH1C	17	6	PIK3C2A	25443	chr11:17131979:-	USH1C	54453	chr11:17537837:-	ONLY_REF_SPLICE	YES	36	3	0.39	0.88	0.1596	0.0563	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,USH1C->USH1_protein_network_component_harmonin,chr11:17515442-17565963:-	TE1_OESOPHAGUS	0.39	0.88	0.2159	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	SLC16A3--ZBED5	17	0	SLC16A3	1133	chr17:80186405:+	ZBED5	19134	chr11:10877804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1596	0	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,ZBED5->chr11:10833621-10880343:-,zinc_finger_BED-type_containing_5	TE1_OESOPHAGUS	1	1	0.1596	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	JMJD1C--RP11-445N18.7	15	3	JMJD1C	2633	chr10:65140078:-	RP11-445N18.7	41376	chr10:45652226:+	ONLY_REF_SPLICE	YES	8	1	0.69	0.95	0.1408	0.0282	JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,RP11-445N18.7->chr10:45642842-45666837:+	TE1_OESOPHAGUS	0.69	0.95	0.169	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	TTI1--KIAA1755	13	0	TTI1	1065	chr20:36661806:-	KIAA1755	32562	chr20:36842145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1221	0	TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-,KIAA1755->KIAA1755,chr20:36838890-36889174:-	TE1_OESOPHAGUS	1	1	0.1221	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	DIDO1--FRG1	11	7	DIDO1	1157	chr20:61569148:-	FRG1	32340	chr4:190873317:+	ONLY_REF_SPLICE	YES	8	46	0.69	0.28	0.1033	0.0657	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,FRG1->FSHD_region_gene_1,chr4:190861943-190884359:+	TE1_OESOPHAGUS	0.28	0.69	0.169	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	FAM129B--ENG	11	2	FAM129B	1068	chr9:130341201:-	ENG	23528	chr9:130588951:-	ONLY_REF_SPLICE	YES	1	42	0.93	0.24	0.1033	0.0188	FAM129B->chr9:130267618-130341268:-,family_with_sequence_similarity_129_member_B,ENG->chr9:130577291-130617035:-,endoglin	TE1_OESOPHAGUS	0.24	0.93	0.1221	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	AFMID--TNRC6C	6	1	AFMID	6295	chr17:76198832:+	TNRC6C	34525	chr17:76087521:+	ONLY_REF_SPLICE	YES	25	7	0.22	0.5	0.0563	0.0094	LOCAL_REARRANGEMENT:+:[78482],AFMID->arylformamidase,chr17:76183398-76203782:+,TNRC6C->chr17:76000249-76104916:+,trinucleotide_repeat_containing_6C	TE1_OESOPHAGUS	0.22	0.5	0.0657	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	JMJD1C--RP11-445N18.7	5	4	JMJD1C	2633	chr10:65140078:-	RP11-445N18.7	37961	chr10:45645793:+	INCL_NON_REF_SPLICE	YES	8	0	0.53	1	0.0469	0.0376	JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,RP11-445N18.7->chr10:45642842-45666837:+	TE1_OESOPHAGUS	0.53	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	KCTD14--NDUFC2	4	4	KCTD14	3361	chr11:77734206:-	NDUFC2	9351	chr11:77790832:-	INCL_NON_REF_SPLICE	YES	2	3	0.8	0.73	0.0376	0.0376	LOCAL_REARRANGEMENT:-:[22113],KCTD14->chr11:77726761-77757237:-,potassium_channel_tetramerization_domain_containing_14,NDUFC2->NADH:ubiquinone_oxidoreductase_subunit_C2,chr11:77779350-77791265:-	TE1_OESOPHAGUS	0.73	0.8	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	SLC16A3--ZBED5	5	0	SLC16A3	1149	chr17:80186421:+	ZBED5	19134	chr11:10877804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,ZBED5->chr11:10833621-10880343:-,zinc_finger_BED-type_containing_5	TE1_OESOPHAGUS	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	CEP128--KIF26B	4	1	CEP128	28669	chr14:81209419:-	KIF26B	59588	chr1:245809423:+	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0376	0.0094	CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B	TE1_OESOPHAGUS	0.29	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	CCDC91--RP11-993B23.3	3	4	CCDC91	5569	chr12:28343574:+	RP11-993B23.3	34818	chr12:28111452:+	INCL_NON_REF_SPLICE	YES	19	0	0.27	1	0.0282	0.0376	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RP11-993B23.3->chr12:28111450-28122746:+	TE1_OESOPHAGUS	0.27	1	0.0658	TRUE	0	0	0	2	0	TRUE	ACH-000647
TE1_OESOPHAGUS	PIK3C2A--USH1C	3	4	PIK3C2A	25443	chr11:17131979:-	USH1C	56689	chr11:17533601:-	ONLY_REF_SPLICE	YES	36	2	0.16	0.78	0.0282	0.0376	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,USH1C->USH1_protein_network_component_harmonin,chr11:17515442-17565963:-	TE1_OESOPHAGUS	0.16	0.78	0.0658	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	ASAP1--PVT1	3	0	ASAP1	3357	chr8:131414131:-	PVT1	69169	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	TE1_OESOPHAGUS	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	JMJD1C--RP11-445N18.7	2	3	JMJD1C	2633	chr10:65140078:-	RP11-445N18.7	40311	chr10:45648286:+	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.0188	0.0282	JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,RP11-445N18.7->chr10:45642842-45666837:+	TE1_OESOPHAGUS	0.38	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	ABCC3--ACOX1	2	0	ABCC3	4429	chr17:48733369:+	ACOX1	43605	chr17:73945978:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+,ACOX1->acyl-CoA_oxidase_1,_palmitoyl,chr17:73937588-73975515:-	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	ANKRD52--ATP5B	2	0	ANKRD52	7347	chr12:56645799:-	ATP5B	22177	chr12:57039137:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ANKRD52->ankyrin_repeat_domain_52,chr12:56631591-56652175:-,ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	AP3D1--SPAG7	2	0	AP3D1	12179	chr19:2123357:-	SPAG7	31950	chr17:4869614:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,SPAG7->chr17:4862521-4871167:-,sperm_associated_antigen_7	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	ARHGAP29--PYGL	2	0	ARHGAP29	6167	chr1:94674388:-	PYGL	47041	chr14:51382689:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-,PYGL->chr14:51324609-51411454:-,phosphorylase,_glycogen,_liver	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	BANP--CNDP2	2	0	BANP	21949	chr16:88052273:+	CNDP2	52926	chr18:72186184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,CNDP2->CNDP_dipeptidase_2_(metallopeptidase_M20_family),chr18:72163051-72188366:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	BRD2--PIP4K2B	2	0	BRD2	3138	chr6:32938574:+	PIP4K2B	19533	chr17:36943173:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	BRD2->Oncogene{Bushman},bromodomain_containing_2,chr6:32936437-32949282:+,PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	CDCA8--DVL3	2	0	CDCA8	1367	chr1:38158456:+	DVL3	18726	chr3:183882901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	CDCA8->cell_division_cycle_associated_8,chr1:38158090-38175391:+,DVL3->chr3:183873176-183891398:+,dishevelled_segment_polarity_protein_3	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	EBAG9--YWHAZ	2	0	EBAG9	1751	chr8:110552690:+	YWHAZ	23448	chr8:101937267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	EBAG9->Oncogene{Bushman},chr8:110551940-110578225:+,estrogen_receptor_binding_site_associated,_antigen,_9,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	EIF2AK2--TPX2	2	0	EIF2AK2	3694	chr2:37374831:-	TPX2	45390	chr20:30382205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	EIF2AK2->Oncogene{Bushman},chr2:37326353-37384208:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_2,TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	EIF4A2--ACTN1	2	0	EIF4A2	2273	chr3:186502266:+	ACTN1	24963	chr14:69360464:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	ENTPD4--AKAP2	2	0	ENTPD4	18819	chr8:23261467:-	AKAP2	36773	chr9:112898407:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4,AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	HAT1--NDUFS1	2	0	HAT1	6391	chr2:172809519:+	NDUFS1	35065	chr2:206989000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1,NDUFS1->NADH:ubiquinone_oxidoreductase_core_subunit_S1,chr2:206979541-207024327:-	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	HDGFRP2--MYBL2	2	0	HDGFRP2	2828	chr19:4475580:+	MYBL2	25574	chr20:42331130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	HDGFRP2->chr19:4472284-4502223:+,MYBL2->MYB_proto-oncogene_like_2,Oncogene{Bushman},chr20:42295754-42345136:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	KIAA1671--GNAS	2	0	KIAA1671	1043	chr22:25348739:+	GNAS	48655	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	GTEx&tcga_normals:1/3694=0.03%,KIAA1671->KIAA1671,chr22:25348697-25593415:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	MICALL2--NFYB	2	0	MICALL2	1319	chr7:1498820:-	NFYB	22421	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	MICALL2->MICAL_like_2,chr7:1468101-1499138:-,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	MRPS6--RUNX1	2	0	MRPS6	1045	chr21:35445568:+	RUNX1	38237	chr21:36253010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	MTBP--TAF15	2	0	MTBP	12659	chr8:121483177:+	TAF15	46759	chr17:34169371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	MTBP->MDM2_binding_protein,chr8:121457640-121554373:+,TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	NUFIP2--MID2	2	0	NUFIP2	4061	chr17:27613010:-	MID2	25728	chrX:107160736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2,MID2->chrX:107068985-107170423:+,midline_2	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	OVOL2--DZANK1	2	0	OVOL2	3520	chr20:18037301:-	DZANK1	16639	chr20:18436005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2,DZANK1->chr20:18364011-18447925:-,double_zinc_ribbon_and_ankyrin_repeat_domains_1	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	RARS2--ORC3	2	0	RARS2	11354	chr6:88239260:-	ORC3	39790	chr6:88362834:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[118],RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-,ORC3->chr6:88299839-88377169:+,origin_recognition_complex_subunit_3	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	RP11-138I17.1--G3BP1	2	0	RP11-138I17.1	4196	chr4:137837329:-	G3BP1	14591	chr5:151166164:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	RP11-138I17.1->chr4:137717877-138133953:-,G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	RP11-16B13.1--PTPRA	2	0	RP11-16B13.1	1081	chr14:60558421:-	PTPRA	15260	chr20:2944918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	RP11-16B13.1->chr14:60435834-60558501:-,PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	RP11-849H4.2--MTG2	2	0	RP11-849H4.2	8261	chr11:71627120:-	MTG2	19006	chr20:60770858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	RP11-849H4.2->chr11:71576555-71639700:-,MTG2->chr20:60758085-60778624:+,mitochondrial_ribosome_associated_GTPase_2	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	SLC1A3--SPEF2	2	0	SLC1A3	6825	chr5:36629689:+	SPEF2	22042	chr5:35628562:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	SLC1A3->chr5:36606457-36688436:+,solute_carrier_family_1_member_3,SPEF2->chr5:35617946-35814713:+,sperm_flagellar_2	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	SRRM2--SUN1	2	0	SRRM2	1518	chr16:2802847:+	SUN1	32874	chr7:888055:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	SRRM2->chr16:2802330-2822539:+,serine/arginine_repetitive_matrix_2,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	STT3A--EI24	2	0	STT3A	21928	chr11:125491414:+	EI24	38866	chr11:125453416:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	LOCAL_REARRANGEMENT:+:[7032],STT3A->STT3A,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr11:125461607-125495110:+,EI24->EI24,_autophagy_associated_transmembrane_protein,chr11:125439112-125454575:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	TAF9--DOCK1	2	0	TAF9	1357	chr5:68665484:-	DOCK1	13985	chr10:128768966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	U2SURP--EAF2	2	0	U2SURP	4885	chr3:142720515:+	EAF2	45288	chr3:121573534:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+,EAF2->ELL_associated_factor_2,chr3:121554030-121605373:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	UBR2--GGA2	2	0	UBR2	10992	chr6:42583828:+	GGA2	64931	chr16:23494325:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	UBR2->chr6:42531800-42661242:+,ubiquitin_protein_ligase_E3_component_n-recognin_2,GGA2->chr16:23474863-23533316:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_2	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	ZC3H14--HEATR5A	2	0	ZC3H14	7851	chr14:89041197:+	HEATR5A	34868	chr14:31856581:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14,HEATR5A->HEAT_repeat_containing_5A,chr14:31760994-31889788:-	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	JMJD1C--RP11-445N18.7	1	3	JMJD1C	2633	chr10:65140078:-	RP11-445N18.7	39200	chr10:45647032:+	ONLY_REF_SPLICE	YES	8	2	0.33	0.67	0.0094	0.0282	JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,RP11-445N18.7->chr10:45642842-45666837:+	TE1_OESOPHAGUS	0.33	0.67	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	PIK3C2A--USH1C	1	2	PIK3C2A	25443	chr11:17131979:-	USH1C	62248	chr11:17523527:-	ONLY_REF_SPLICE	YES	36	9	0.08	0.25	0.0094	0.0188	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,USH1C->USH1_protein_network_component_harmonin,chr11:17515442-17565963:-	TE1_OESOPHAGUS	0.08	0.25	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	TBC1D19--CLNK	1	2	TBC1D19	8996	chr4:26640456:+	CLNK	33045	chr4:10637525:-	ONLY_REF_SPLICE	NO	4	0	0.43	1	0.0094	0.0188	TBC1D19->TBC1_domain_family_member_19,chr4:26578059-26756973:+,CLNK->chr4:10488019-10686489:-,cytokine_dependent_hematopoietic_cell_linker	TE1_OESOPHAGUS	0.43	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	OVOL2--DZANK1	1	1	OVOL2	3520	chr20:18037301:-	DZANK1	12862	chr20:18447925:-	ONLY_REF_SPLICE	YES	32	0	0.06	1	0.0094	0.0094	OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2,DZANK1->chr20:18364011-18447925:-,double_zinc_ribbon_and_ankyrin_repeat_domains_1	TE1_OESOPHAGUS	0.06	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
NCIH1836_LUNG	SOX5--PTPN22	101	33	SOX5	23645	chr12:23696145:-	PTPN22	49019	chr1:114372651:-	ONLY_REF_SPLICE	YES	5	0	0.96	1	1.6585	0.5419	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,PTPN22->chr1:114356433-114414381:-,protein_tyrosine_phosphatase,_non-receptor_type_22	NCIH1836_LUNG	0.96	1	2.2004	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	PKN2--SOX5	38	27	PKN2	1407	chr1:89150311:+	SOX5	49133	chr12:23696318:-	ONLY_REF_SPLICE	YES	18	6	0.78	0.92	0.624	0.4434	PKN2->chr1:89149905-89301938:+,protein_kinase_N2,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1836_LUNG	0.78	0.92	1.0674	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	ITPR2--SLC30A7	39	15	ITPR2	2580	chr12:26943090:-	SLC30A7	69563	chr1:101372408:+	ONLY_REF_SPLICE	YES	31	18	0.64	0.75	0.6404	0.2463	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7	NCIH1836_LUNG	0.64	0.75	0.8867	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	LEPR--KIF3C	35	6	LEPR	2252	chr1:65891061:+	KIF3C	46811	chr2:26152932:-	ONLY_REF_SPLICE	YES	1	39	0.98	0.51	0.5747	0.0985	LEPR->chr1:65886248-66107242:+,leptin_receptor,KIF3C->chr2:26149471-26205618:-,kinesin_family_member_3C	NCIH1836_LUNG	0.51	0.98	0.6732	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	CT49--RP11-582E3.2	32	14	CT49	1196	chr5:12575164:+	RP11-582E3.2	13379	chr12:27258191:-	ONLY_REF_SPLICE	YES	35	0	0.57	1	0.5255	0.2299	CT49->chr5:12574969-12804475:+,RP11-582E3.2->chr12:27258084-27314326:-	NCIH1836_LUNG	0.57	1	0.7554	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	SOX5--PTPN22	21	20	SOX5	23645	chr12:23696145:-	PTPN22	49341	chr1:114372329:-	ONLY_REF_SPLICE	YES	5	1	0.89	0.98	0.3448	0.3284	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,PTPN22->chr1:114356433-114414381:-,protein_tyrosine_phosphatase,_non-receptor_type_22	NCIH1836_LUNG	0.89	0.98	0.6732	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	DTD1--RALGAPA2	21	6	DTD1	2314	chr20:18574465:+	RALGAPA2	56788	chr20:20392792:-	ONLY_REF_SPLICE	YES	158	47	0.15	0.36	0.3448	0.0985	DTD1->D-tyrosyl-tRNA_deacylase_1,chr20:18568537-18744561:+,RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-	NCIH1836_LUNG	0.15	0.36	0.4433	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MARCH6--FILIP1L	19	10	MARCH6	21956	chr5:10414614:+	FILIP1L	43162	chr3:99649874:-	ONLY_REF_SPLICE	YES	224	0	0.11	1	0.312	0.1642	MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,FILIP1L->chr3:99548985-99833357:-,filamin_A_interacting_protein_1-like	NCIH1836_LUNG	0.11	1	0.4762	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	LTBP1--NEGR1	15	19	LTBP1	6941	chr2:33360027:+	NEGR1	48705	chr1:72241980:-	ONLY_REF_SPLICE	YES	0	64	1	0.35	0.2463	0.312	LTBP1->chr2:33172039-33624576:+,latent_transforming_growth_factor_beta_binding_protein_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	NCIH1836_LUNG	0.35	1	0.5583	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	FAR2--RP4-665J23.1	16	10	FAR2	1305	chr12:29302340:+	RP4-665J23.1	33448	chr1:91248980:-	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.2627	0.1642	FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2,RP4-665J23.1->chr1:91248543-91317207:-	NCIH1836_LUNG	0.96	0.96	0.4269	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	NFATC3--CDH1	15	6	NFATC3	16832	chr16:68225678:+	CDH1	33793	chr16:68835573:+	ONLY_REF_SPLICE	YES	33	83	0.39	0.2	0.2463	0.0985	NFATC3->Oncogene{Bushman},chr16:68118654-68263162:+,nuclear_factor_of_activated_T-cells_3,CDH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cadherin_1,chr16:68771128-68869451:+	NCIH1836_LUNG	0.2	0.39	0.3448	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	ZFP69B--BEND5	10	5	ZFP69B	1074	chr1:40915847:+	BEND5	15270	chr1:49202124:-	ONLY_REF_SPLICE	YES	0	17	1	0.47	0.1642	0.0821	ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	NCIH1836_LUNG	0.47	1	0.2463	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	CT49--C12orf71	9	5	CT49	1196	chr5:12575164:+	C12orf71	11919	chr12:27234400:-	ONLY_REF_SPLICE	YES	35	8	0.29	0.64	0.1478	0.0821	CT49->chr5:12574969-12804475:+,C12orf71->chr12:27233991-27235447:-,chromosome_12_open_reading_frame_71	NCIH1836_LUNG	0.29	0.64	0.2299	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	AC027612.3--AP000345.1	9	1	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.1478	0.0164	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH1836_LUNG	0.83	1	0.1642	TRUE	0	0	0	11	0	TRUE	ACH-000559
NCIH1836_LUNG	FAM134C--NLE1	8	3	FAM134C	2538	chr17:40761104:-	NLE1	18212	chr17:33469141:-	ONLY_REF_SPLICE	YES	34	10	0.24	0.52	0.1314	0.0493	FAM134C->chr17:40731531-40762641:-,family_with_sequence_similarity_134_member_C,NLE1->Oncogene{Bushman},chr17:33455772-33469334:-,notchless_homolog_1_(Drosophila)	NCIH1836_LUNG	0.24	0.52	0.1807	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	DIP2B--CTD-2341M24.1	7	0	DIP2B	1256	chr12:50899023:+	CTD-2341M24.1	55665	chr14:86594294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1149	0	DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B,CTD-2341M24.1->chr14:86401054-86596117:+	NCIH1836_LUNG	1	1	0.1149	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	DTD1--RALGAPA2	6	4	DTD1	2314	chr20:18574465:+	RALGAPA2	58950	chr20:20373897:-	ONLY_REF_SPLICE	YES	158	64	0.06	0.14	0.0985	0.0657	DTD1->D-tyrosyl-tRNA_deacylase_1,chr20:18568537-18744561:+,RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-	NCIH1836_LUNG	0.06	0.14	0.1642	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	LTBP1--NEGR1	6	4	LTBP1	5386	chr2:33335818:+	NEGR1	48705	chr1:72241980:-	ONLY_REF_SPLICE	YES	4	64	0.71	0.14	0.0985	0.0657	LTBP1->chr2:33172039-33624576:+,latent_transforming_growth_factor_beta_binding_protein_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	NCIH1836_LUNG	0.14	0.71	0.1642	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	BEND5--ZFP69B	6	2	BEND5	4254	chr1:49224572:-	ZFP69B	14212	chr1:40922617:+	ONLY_REF_SPLICE	YES	20	23	0.29	0.26	0.0985	0.0328	BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	NCIH1836_LUNG	0.26	0.29	0.1313	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	NAA40--MARK2	5	6	NAA40	3740	chr11:63714475:+	MARK2	26689	chr11:63670076:+	ONLY_REF_SPLICE	YES	86	65	0.11	0.14	0.0821	0.0985	LOCAL_REARRANGEMENT:+:[27940],NAA40->N(alpha)-acetyltransferase_40,_NatD_catalytic_subunit,chr11:63706431-63724800:+,MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2	NCIH1836_LUNG	0.11	0.14	0.1806	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	NFATC3--CDH1	3	11	NFATC3	22068	chr16:68260462:+	CDH1	33793	chr16:68835573:+	INCL_NON_REF_SPLICE	YES	34	83	0.29	0.14	0.0493	0.1806	NFATC3->Oncogene{Bushman},chr16:68118654-68263162:+,nuclear_factor_of_activated_T-cells_3,CDH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cadherin_1,chr16:68771128-68869451:+	NCIH1836_LUNG	0.14	0.29	0.2299	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	SCFD2--ZCCHC4	4	5	SCFD2	8976	chr4:53773624:-	ZCCHC4	16329	chr4:25315668:+	ONLY_REF_SPLICE	YES	27	38	0.25	0.19	0.0657	0.0821	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,ZCCHC4->chr4:25314407-25372005:+,zinc_finger_CCHC-type_containing_4	NCIH1836_LUNG	0.19	0.25	0.1478	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	STK40--SLC35F6	5	0	STK40	1174	chr1:36851324:-	SLC35F6	21427	chr2:26997119:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0821	0	STK40->chr1:36805225-36851497:-,serine/threonine_kinase_40,SLC35F6->chr2:26987152-27004099:+,solute_carrier_family_35_member_F6	NCIH1836_LUNG	1	1	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	NCOA1--AC073479.1	4	3	NCOA1	19858	chr2:24933980:+	AC073479.1	37954	chr2:6108718:+	ONLY_REF_SPLICE	YES	72	1	0.09	0.88	0.0657	0.0493	NCOA1->Oncogene{Bushman},chr2:24714783-24993571:+,nuclear_receptor_coactivator_1,AC073479.1->chr2:6072819-6141407:+	NCIH1836_LUNG	0.09	0.88	0.115	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	ALPL--C20orf26	4	1	ALPL	1153	chr1:21836010:+	C20orf26	33350	chr20:20147041:+	ONLY_REF_SPLICE	YES	0	3	1	0.62	0.0657	0.0164	ALPL->alkaline_phosphatase,_liver/bone/kidney,chr1:21835858-21904905:+,C20orf26->chr20:20033158-20341346:+	NCIH1836_LUNG	0.62	1	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	AP000525.9--LA16c-60G3.6	4	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH1836_LUNG	1	1	0.0657	TRUE	0	5	0	18	5	TRUE	ACH-000559
NCIH1836_LUNG	SMAP2--BEND5	3	3	SMAP2	13615	chr1:40882768:+	BEND5	24370	chr1:49202124:-	ONLY_REF_SPLICE	YES	40	17	0.13	0.26	0.0493	0.0493	SMAP2->chr1:40810522-40888998:+,small_ArfGAP2,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	NCIH1836_LUNG	0.13	0.26	0.0986	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	LEPR--KIF3C	2	6	LEPR	2252	chr1:65891061:+	KIF3C	46814	chr2:26152929:-	ONLY_REF_SPLICE	YES	1	35	0.89	0.19	0.0328	0.0985	LEPR->chr1:65886248-66107242:+,leptin_receptor,KIF3C->chr2:26149471-26205618:-,kinesin_family_member_3C	NCIH1836_LUNG	0.19	0.89	0.1313	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	ALPL--C20orf26	3	1	ALPL	1153	chr1:21836010:+	C20orf26	38161	chr20:20168574:+	ONLY_REF_SPLICE	YES	0	3	1	0.57	0.0493	0.0164	ALPL->alkaline_phosphatase,_liver/bone/kidney,chr1:21835858-21904905:+,C20orf26->chr20:20033158-20341346:+	NCIH1836_LUNG	0.57	1	0.0657	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	ATP8A2--CDK8	3	0	ATP8A2	2365	chr13:26043259:+	CDK8	55098	chr13:26911704:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+,CDK8->ArcherDX_panel,FoundationOne_panel,chr13:26828276-26979375:+,cyclin-dependent_kinase_8	NCIH1836_LUNG	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	LRRC40--AC019048.1	3	0	LRRC40	1231	chr1:70671073:-	AC019048.1	23208	chr2:7203045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	LRRC40->chr1:70610488-70671303:-,leucine_rich_repeat_containing_40,AC019048.1->chr2:7202858-7218011:-	NCIH1836_LUNG	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	ALPL--C20orf26	2	2	ALPL	1153	chr1:21836010:+	C20orf26	32171	chr20:20144694:+	ONLY_REF_SPLICE	YES	0	6	1	0.4	0.0328	0.0328	ALPL->alkaline_phosphatase,_liver/bone/kidney,chr1:21835858-21904905:+,C20orf26->chr20:20033158-20341346:+	NCIH1836_LUNG	0.4	1	0.0656	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	SCFD2--ZCCHC4	2	2	SCFD2	8976	chr4:53773624:-	ZCCHC4	17448	chr4:25316940:+	ONLY_REF_SPLICE	YES	27	39	0.13	0.09	0.0328	0.0328	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,ZCCHC4->chr4:25314407-25372005:+,zinc_finger_CCHC-type_containing_4	NCIH1836_LUNG	0.09	0.13	0.0656	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	LRRC40--AC019048.1	2	0	LRRC40	2413	chr1:70654775:-	AC019048.1	23208	chr2:7203045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0328	0	LRRC40->chr1:70610488-70671303:-,leucine_rich_repeat_containing_40,AC019048.1->chr2:7202858-7218011:-	NCIH1836_LUNG	1	1	0.0328	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	RP11-412P11.1--GBA3	2	0	RP11-412P11.1	3285	chr4:23004866:+	GBA3	14744	chr4:22737604:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0328	0	RP11-412P11.1->chr4:22999174-23058485:+,GBA3->chr4:22694537-22821198:+,glucosylceramidase_beta_3_(gene/pseudogene)	NCIH1836_LUNG	1	1	0.0328	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	RP11-463M16.4--FAM192A	2	0	RP11-463M16.4	2476	chr17:46969609:-	FAM192A	13889	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0328	0	RP11-463M16.4->chr17:46952222-46986345:-,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	NCIH1836_LUNG	1	1	0.0328	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	ITPR2--SLC30A7	1	3	ITPR2	2580	chr12:26943090:-	SLC30A7	71726	chr1:101377668:+	ONLY_REF_SPLICE	YES	31	14	0.11	0.22	0.0164	0.0493	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7	NCIH1836_LUNG	0.11	0.22	0.0657	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	BEND5--ZFP69B	1	2	BEND5	5403	chr1:49208295:-	ZFP69B	14212	chr1:40922617:+	ONLY_REF_SPLICE	YES	18	23	0.14	0.12	0.0164	0.0328	BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	NCIH1836_LUNG	0.12	0.14	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000559
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	331	138	MLLT10	2720	chr10:21827841:+	PICALM	59377	chr11:85685855:-	ONLY_REF_SPLICE	YES	38	99	0.93	0.83	3.292	1.3725	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.93	4.6645	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNS3--H2AFV	217	51	TNS3	9815	chr7:47520701:-	H2AFV	49743	chr7:44882953:-	ONLY_REF_SPLICE	YES	6	53	0.98	0.83	2.1582	0.5072	TNS3->chr7:47314752-47622156:-,tensin_3,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.98	2.6654	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	153	181	MLLT10	2720	chr10:21827841:+	PICALM	58317	chr11:85687725:-	ONLY_REF_SPLICE	YES	38	98	0.9	0.77	1.5217	1.8001	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.9	3.3218	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--MLLT10	68	13	PICALM	19502	chr11:85692172:-	MLLT10	38328	chr10:21875223:+	ONLY_REF_SPLICE	YES	94	24	0.46	0.77	0.6763	0.1293	Mitelman{ALL=2},YOSHIHARA_TCGA_num_samples[LAML:2],{Klijn_CCL:Lymphoid=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.77	0.8056	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCTD7--DYNC1I1	63	12	KCTD7	14247	chr7:66240380:+	DYNC1I1	38048	chr7:95606824:+	ONLY_REF_SPLICE	YES	40	0	0.65	1	0.6266	0.1193	KCTD7->chr7:66093868-66276446:+,potassium_channel_tetramerization_domain_containing_7,DYNC1I1->chr7:95401866-95739634:+,dynein_cytoplasmic_1_intermediate_chain_1	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.7459	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	4	182	MLLT10	4977	chr10:21840850:+	PICALM	58317	chr11:85687725:-	ONLY_REF_SPLICE	YES	38	98	0.83	0.65	0.0398	1.8101	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.83	1.8499	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	32	51	MLLT10	2720	chr10:21827841:+	PICALM	61585	chr11:85670103:-	ONLY_REF_SPLICE	YES	38	144	0.69	0.37	0.3183	0.5072	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.69	0.8255	TRUE	0	0	0	2	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MKLN1-AS1--STEAP4	32	5	MKLN1-AS1	13605	chr7:130630479:-	STEAP4	21462	chr7:87913586:-	ONLY_REF_SPLICE	YES	39	0	0.49	1	0.3183	0.0497	MKLN1-AS1->chr7:130626519-130794935:-,STEAP4->STEAP4_metalloreductase,chr7:87905744-87936206:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	1	0.368	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKCZ--CAMTA1	27	8	PRKCZ	32550	chr1:2116137:+	CAMTA1	38606	chr1:6880241:+	ONLY_REF_SPLICE	YES	9	57	0.8	0.38	0.2685	0.0796	PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta,CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.8	0.3481	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF2IRD2--RP5-945F2.2	27	5	GTF2IRD2	4710	chr7:74239462:-	RP5-945F2.2	25763	chr7:67583542:+	ONLY_REF_SPLICE	YES	44	0	0.42	1	0.2685	0.0497	GTF2IRD2->GTF2I_repeat_domain_containing_2,chr7:74210483-74267847:-,RP5-945F2.2->chr7:67556210-67584196:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.3182	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF2IRD2--RP5-945F2.2	20	10	GTF2IRD2	5894	chr7:74237152:-	RP5-945F2.2	25763	chr7:67583542:+	ONLY_REF_SPLICE	YES	36	0	0.45	1	0.1989	0.0995	GTF2IRD2->GTF2I_repeat_domain_containing_2,chr7:74210483-74267847:-,RP5-945F2.2->chr7:67556210-67584196:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	1	0.2984	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNAI2--RBM6	20	2	GNAI2	1902	chr3:50264625:+	RBM6	31078	chr3:50085678:+	ONLY_REF_SPLICE	YES	2	77	0.92	0.22	0.1989	0.0199	GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+,RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.92	0.2188	TRUE	0	1	0	1	1	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNS3--H2AFV	7	37	TNS3	8632	chr7:47546505:-	H2AFV	49743	chr7:44882953:-	ONLY_REF_SPLICE	YES	7	53	0.86	0.45	0.0696	0.368	TNS3->chr7:47314752-47622156:-,tensin_3,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.86	0.4376	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCTD7--DYNC1I1	11	19	KCTD7	15414	chr7:66248828:+	DYNC1I1	38048	chr7:95606824:+	ONLY_REF_SPLICE	YES	19	0	0.61	1	0.1094	0.189	KCTD7->chr7:66093868-66276446:+,potassium_channel_tetramerization_domain_containing_7,DYNC1I1->chr7:95401866-95739634:+,dynein_cytoplasmic_1_intermediate_chain_1	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	0.2984	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	3	51	MLLT10	1640	chr10:21823733:+	PICALM	59377	chr11:85685855:-	ONLY_REF_SPLICE	YES	33	99	0.62	0.35	0.0298	0.5072	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.62	0.537	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNAI2--RBM6	11	9	GNAI2	4836	chr3:50268430:+	RBM6	31078	chr3:50085678:+	ONLY_REF_SPLICE	YES	19	77	0.51	0.21	0.1094	0.0895	GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+,RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.51	0.1989	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNS3--H2AFV	8	21	TNS3	9815	chr7:47520701:-	H2AFV	50821	chr7:44880611:-	ONLY_REF_SPLICE	YES	6	525	0.83	0.05	0.0796	0.2089	TNS3->chr7:47314752-47622156:-,tensin_3,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.83	0.2885	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCTD7--DYNC1I1	6	19	KCTD7	15414	chr7:66248828:+	DYNC1I1	38050	chr7:95606826:+	INCL_NON_REF_SPLICE	YES	19	0	0.57	1	0.0597	0.189	KCTD7->chr7:66093868-66276446:+,potassium_channel_tetramerization_domain_containing_7,DYNC1I1->chr7:95401866-95739634:+,dynein_cytoplasmic_1_intermediate_chain_1	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.2487	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--MLLT10	4	13	PICALM	19502	chr11:85692172:-	MLLT10	37276	chr10:21860904:+	ONLY_REF_SPLICE	YES	94	27	0.15	0.39	0.0398	0.1293	Mitelman{ALL=2},YOSHIHARA_TCGA_num_samples[LAML:2],{Klijn_CCL:Lymphoid=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.39	0.1691	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--MLLT10	3	13	PICALM	19502	chr11:85692172:-	MLLT10	35094	chr10:21845572:+	ONLY_REF_SPLICE	YES	94	38	0.15	0.3	0.0298	0.1293	Mitelman{ALL=2},YOSHIHARA_TCGA_num_samples[LAML:2],{Klijn_CCL:Lymphoid=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.3	0.1591	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--MLLT10	2	7	PICALM	19502	chr11:85692172:-	MLLT10	39383	chr10:21884260:+	ONLY_REF_SPLICE	YES	94	28	0.09	0.24	0.0199	0.0696	Mitelman{ALL=2},YOSHIHARA_TCGA_num_samples[LAML:2],{Klijn_CCL:Lymphoid=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.24	0.0895	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF2IRD2--RP5-945F2.2	1	10	GTF2IRD2	6091	chr7:74236955:-	RP5-945F2.2	25763	chr7:67583542:+	ONLY_REF_SPLICE	NO	30	0	0.27	1	0.0099	0.0995	GTF2IRD2->GTF2I_repeat_domain_containing_2,chr7:74210483-74267847:-,RP5-945F2.2->chr7:67556210-67584196:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.1094	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MKLN1-AS1--STEAP4	2	5	MKLN1-AS1	13605	chr7:130630479:-	STEAP4	20363	chr7:87920329:-	ONLY_REF_SPLICE	YES	39	0	0.15	1	0.0199	0.0497	MKLN1-AS1->chr7:130626519-130794935:-,STEAP4->STEAP4_metalloreductase,chr7:87905744-87936206:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-112J1.2--DAAM1	3	0	RP11-112J1.2	6942	chr14:59415059:+	DAAM1	13257	chr14:59730159:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	RP11-112J1.2->chr14:59294952-59484046:+,DAAM1->chr14:59655364-59838123:+,dishevelled_associated_activator_of_morphogenesis_1	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0298	TRUE	0	0	0	2	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNAI2--RBM6	2	2	GNAI2	1902	chr3:50264625:+	RBM6	28868	chr3:50036873:+	ONLY_REF_SPLICE	YES	2	63	0.67	0.06	0.0199	0.0199	GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+,RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.67	0.0398	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC14--AHSA2	2	0	CCDC14	4735	chr3:123675587:-	AHSA2	31000	chr2:61413581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC12A--LUC7L2	2	0	CLEC12A	6135	chr12:10134728:+	LUC7L2	25103	chr7:139106909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	CLEC12A->C-type_lectin_domain_family_12_member_A,chr12:10103915-10148293:+,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4EBP1--CHMP7	2	0	EIF4EBP1	1378	chr8:37888236:+	CHMP7	9282	chr8:23103769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	EIF4EBP1->Oncogene{Bushman},chr8:37887859-37917883:+,eukaryotic_translation_initiation_factor_4E_binding_protein_1,CHMP7->charged_multivesicular_body_protein_7,chr8:23101150-23119512:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEPSECS--CHEK1	2	0	SEPSECS	1327	chr4:25161878:-	CHEK1	31675	chr11:125525120:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SEPSECS->Sep_(O-phosphoserine)_tRNA:Sec_(selenocysteine)_tRNA_synthase,chr4:25121627-25162204:-,CHEK1->ArcherDX_panel,FoundationOne_panel,checkpoint_kinase_1,chr11:125495036-125546150:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TP53BP2--LZIC	2	0	TP53BP2	20078	chr1:223976710:-	LZIC	35452	chr1:9982416:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2,LZIC->chr1:9982173-10003465:-,leucine_zipper_and_CTNNBIP1_domain_containing	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XIAP--NCAPD2	2	0	XIAP	1570	chrX:122994143:+	NCAPD2	26209	chr12:6625994:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	XIAP->X-linked_inhibitor_of_apoptosis,chrX:122993574-123047829:+,NCAPD2->Oncogene{Bushman},chr12:6602522-6641121:+,non-SMC_condensin_I_complex_subunit_D2	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF2IRD2--RP5-945F2.2	1	2	GTF2IRD2	3428	chr7:74247928:-	RP5-945F2.2	25763	chr7:67583542:+	ONLY_REF_SPLICE	YES	67	0	0.04	1	0.0099	0.0199	GTF2IRD2->GTF2I_repeat_domain_containing_2,chr7:74210483-74267847:-,RP5-945F2.2->chr7:67556210-67584196:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0298	TRUE	0	0	0	1	0	TRUE	ACH-000770
SW1417_LARGE_INTESTINE	QKI--WDR27	86	31	QKI	9463	chr6:163899928:+	WDR27	64695	chr6:169857729:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.3774	0.4965	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,WDR27->WD_repeat_domain_27,chr6:169857307-170102159:-	SW1417_LARGE_INTESTINE	0.99	1	1.8739	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	HDDC2--SRPK1	37	22	HDDC2	3774	chr6:125619860:-	SRPK1	34405	chr6:35810381:-	ONLY_REF_SPLICE	YES	84	63	0.41	0.48	0.5926	0.3524	{Klijn_CCL:Colo-Rectal=1},HDDC2->HD_domain_containing_2,chr6:125541108-125623282:-,SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	SW1417_LARGE_INTESTINE	0.41	0.48	0.945	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	POMK--CA3	34	23	POMK	4467	chr8:42958973:+	CA3	12996	chr8:86351941:+	ONLY_REF_SPLICE	YES	5	0	0.92	1	0.5446	0.3684	POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,CA3->carbonic_anhydrase_3,chr8:86285665-86361269:+	SW1417_LARGE_INTESTINE	0.92	1	0.913	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	HDDC2--SRPK1	17	15	HDDC2	2410	chr6:125621684:-	SRPK1	34405	chr6:35810381:-	ONLY_REF_SPLICE	YES	75	63	0.3	0.34	0.2723	0.2402	{Klijn_CCL:Colo-Rectal=1},HDDC2->HD_domain_containing_2,chr6:125541108-125623282:-,SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	SW1417_LARGE_INTESTINE	0.3	0.34	0.5125	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	CCAT1--CASC8	13	8	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	30	0	0.41	1	0.2082	0.1281	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SW1417_LARGE_INTESTINE	0.41	1	0.3363	TRUE	0	26	0	18	24	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	WDR27--QKI	12	4	WDR27	30070	chr6:169982932:-	QKI	47709	chr6:163956014:+	ONLY_REF_SPLICE	YES	5	1	0.76	0.94	0.1922	0.0641	{Klijn_CCL:Colo-Rectal=1},WDR27->WD_repeat_domain_27,chr6:169857307-170102159:-,QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+	SW1417_LARGE_INTESTINE	0.76	0.94	0.2563	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	CCAT1--CASC8	9	14	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	30	0	0.43	1	0.1441	0.2242	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SW1417_LARGE_INTESTINE	0.43	1	0.3683	TRUE	0	7	0	14	6	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	POMK--CA3	5	24	POMK	4467	chr8:42958973:+	CA3	10829	chr8:86295183:+	ONLY_REF_SPLICE	YES	5	0	0.85	1	0.0801	0.3844	POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,CA3->carbonic_anhydrase_3,chr8:86285665-86361269:+	SW1417_LARGE_INTESTINE	0.85	1	0.4645	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	POMK--CA3	1	6	POMK	4467	chr8:42958973:+	CA3	14194	chr8:86354302:+	ONLY_REF_SPLICE	YES	5	11	0.58	0.39	0.016	0.0961	POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,CA3->carbonic_anhydrase_3,chr8:86285665-86361269:+	SW1417_LARGE_INTESTINE	0.39	0.58	0.1121	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	ATP11C--CXorf66	1	1	ATP11C	3132	chrX:139014175:-	CXorf66	42658	chrX:139040376:-	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.016	0.016	LOCAL_REARRANGEMENT:-:[10449],ATP11C->ATPase_phospholipid_transporting_11C,chrX:138808505-139027435:-,CXorf66->chrX:139037884-139047679:-,chromosome_X_open_reading_frame_66	SW1417_LARGE_INTESTINE	0.11	1	0.032	TRUE	0	1	0	1	1	TRUE	ACH-000236
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	296	58	IGH@	93981	chr14:106330797:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1262	0	0.22	1	2.6446	0.5182	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	3.1628	TRUE	0	0	0	3	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	216	92	IGH@	95370	chr14:106329408:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1220	0	0.2	1	1.9298	0.822	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	2.7518	TRUE	0	0	0	3	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	210	26	IGH@	93369	chr14:106331409:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1398	0	0.14	1	1.8762	0.2323	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	2.1085	TRUE	0	0	0	3	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--RP3-436N22.3	168	43	RABGAP1L	14961	chr1:174274265:+	RP3-436N22.3	55637	chr1:173571911:+	ONLY_REF_SPLICE	YES	125	0	0.63	1	1.501	0.3842	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,RP3-436N22.3->chr1:173524390-173581911:+	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	1	1.8852	TRUE	0	0	0	1	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	90	20	IGH@	93161	chr14:106331617:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1398	0	0.07	1	0.8041	0.1787	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.9828	TRUE	0	0	0	3	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	74	62	IGH@	94353	chr14:106330425:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1238	0	0.1	1	0.6611	0.5539	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	1.215	TRUE	0	0	0	3	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	60	63	IGH@	94754	chr14:106330024:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1204	0	0.09	1	0.5361	0.5629	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	1.099	TRUE	0	0	0	3	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SECISBP2L--HMGB2	19	0	SECISBP2L	20495	chr15:49284746:-	HMGB2	30528	chr4:174253317:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1698	0	SECISBP2L->SECIS_binding_protein_2_like,chr15:49280673-49338760:-,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1698	TRUE	0	0	0	2	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--RP3-436N22.3	1	43	RABGAP1L	18286	chr1:174363283:+	RP3-436N22.3	55637	chr1:173571911:+	ONLY_REF_SPLICE	NO	153	0	0.22	1	0.0089	0.3842	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,RP3-436N22.3->chr1:173524390-173581911:+	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.3931	TRUE	0	0	0	1	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	8	0	IGH@	97640	chr14:106321054:-	TMSB4X	131816	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0715	TRUE	0	0	0	6	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--RP3-436N22.3	2	13	RABGAP1L	13819	chr1:174247917:+	RP3-436N22.3	55637	chr1:173571911:+	ONLY_REF_SPLICE	YES	192	0	0.07	1	0.0179	0.1161	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,RP3-436N22.3->chr1:173524390-173581911:+	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.134	TRUE	0	0	0	1	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SECISBP2L--HMGB2	5	0	SECISBP2L	20486	chr15:49284755:-	HMGB2	30518	chr4:174253327:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	SECISBP2L->SECIS_binding_protein_2_like,chr15:49280673-49338760:-,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0447	TRUE	0	0	0	2	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2C--SFPQ	3	0	PRRC2C	1224	chr1:171454874:+	SFPQ	59743	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	TRUE	0	1	1	1	1	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SECISBP2L--HMGB2	3	0	SECISBP2L	20492	chr15:49284749:-	HMGB2	30498	chr4:174253347:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	SECISBP2L->SECIS_binding_protein_2_like,chr15:49280673-49338760:-,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	TRUE	0	0	0	2	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C4orf32--TIFA	2	0	C4orf32	1337	chr4:113066889:+	TIFA	16259	chr4:113199590:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	LOCAL_INVERSION:+:-:[79286],C4orf32->chr4:113066553-113116412:+,chromosome_4_open_reading_frame_32,TIFA->TRAF_interacting_protein_with_forkhead_associated_domain,chr4:113195698-113207059:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2207O23.3--IGL@	2	0	CTD-2207O23.3	2443	chr19:7448089:+	IGL@	82664	chr22:23237555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	CTD-2207O23.3->chr19:7445850-7535131:+,IGL@->Oncogene{Bushman}	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--MYBL1	2	0	IGLL5	1480	chr22:23230439:+	MYBL1	10439	chr8:67514758:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,MYBL1->MYB_proto-oncogene_like_1,Oncogene{Bushman},chr8:67474410-67526482:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHL26--EXOC3	2	0	KLHL26	1173	chr19:18747947:+	EXOC3	21830	chr5:462075:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	KLHL26->chr19:18747775-18781309:+,kelch_like_family_member_26,EXOC3->chr5:443273-472052:+,exocyst_complex_component_3	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000654
SNU1197_LARGE_INTESTINE	CCAT1--CASC8	299	109	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	12	3	0.97	0.99	2.8623	1.0435	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1197_LARGE_INTESTINE	0.97	0.99	3.9058	TRUE	0	7	0	7	7	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	WBP4--SLC25A15	167	45	WBP4	3715	chr13:41639423:+	SLC25A15	22860	chr13:41383679:+	ONLY_REF_SPLICE	YES	96	21	0.69	0.91	1.5987	0.4308	WBP4->WW_domain_binding_protein_4,chr13:41635410-41658137:+,SLC25A15->chr13:41363548-41384247:+,solute_carrier_family_25_member_15	SNU1197_LARGE_INTESTINE	0.69	0.91	2.0295	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	RORC--THEM4	38	23	RORC	2975	chr1:151801905:-	THEM4	23401	chr1:151849601:-	ONLY_REF_SPLICE	YES	2	35	0.97	0.64	0.3638	0.2202	LOCAL_REARRANGEMENT:-:[41712],RORC->Oncogene{Bushman},RAR_related_orphan_receptor_C,chr1:151778547-151804348:-,THEM4->chr1:151846060-151882284:-,thioesterase_superfamily_member_4	SNU1197_LARGE_INTESTINE	0.64	0.97	0.584	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	CCAT1--CASC8	10	86	CCAT1	1274	chr8:128231060:-	CASC8	12971	chr8:128433208:-	INCL_NON_REF_SPLICE	YES	8	3	0.92	0.97	0.0957	0.8233	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1197_LARGE_INTESTINE	0.92	0.97	0.919	TRUE	0	7	0	7	7	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	CCAT1--CASC8	3	109	CCAT1	1279	chr8:128231055:-	CASC8	11189	chr8:128455965:-	ONLY_REF_SPLICE	YES	12	0	0.9	1	0.0287	1.0435	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1197_LARGE_INTESTINE	0.9	1	1.0722	TRUE	0	0	0	2	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	CCAT1--CASC8	7	34	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	12	45	0.77	0.48	0.067	0.3255	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1197_LARGE_INTESTINE	0.48	0.77	0.3925	TRUE	0	7	0	14	6	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	CCAT1--CASC8	9	19	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	12	60	0.7	0.32	0.0862	0.1819	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1197_LARGE_INTESTINE	0.32	0.7	0.2681	TRUE	0	26	0	18	24	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	HMGCS1--CDC37	3	0	HMGCS1	1157	chr5:43313458:-	CDC37	22321	chr19:10504117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	HMGCS1->3-hydroxy-3-methylglutaryl-CoA_synthase_1,chr5:43289497-43313614:-,CDC37->cell_division_cycle_37,chr19:10501810-10530797:-	SNU1197_LARGE_INTESTINE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	TXNRD1--CHST11	3	0	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	SNU1197_LARGE_INTESTINE	1	1	0.0287	TRUE	0	2	1	13	2	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	CWC27--MAL2	2	0	CWC27	8669	chr5:64084847:+	MAL2	29012	chr8:120252405:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+,MAL2->chr8:120177273-120257913:+,mal,_T-cell_differentiation_protein_2_(gene/pseudogene)	SNU1197_LARGE_INTESTINE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	INPP5D--TMBIM1	2	0	INPP5D	1646	chr2:233925322:+	TMBIM1	45287	chr2:219144849:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	INPP5D->chr2:233924677-234116549:+,inositol_polyphosphate-5-phosphatase_D,TMBIM1->chr2:219138915-219157309:-,transmembrane_BAX_inhibitor_motif_containing_1	SNU1197_LARGE_INTESTINE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	PCYT2--STRA13	2	0	PCYT2	3599	chr17:79866444:-	STRA13	16526	chr17:79977785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	PCYT2->chr17:79858841-79869340:-,phosphate_cytidylyltransferase_2,_ethanolamine,STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13	SNU1197_LARGE_INTESTINE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	PLXNB3--CDK5RAP3	2	0	PLXNB3	2219	chrX:153031035:+	CDK5RAP3	20934	chr17:46048728:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	PLXNB3->chrX:153029651-153044801:+,plexin_B3,CDK5RAP3->CDK5_regulatory_subunit_associated_protein_3,chr17:46045176-46059140:+	SNU1197_LARGE_INTESTINE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	TRIP10--TCP1	2	0	TRIP10	10652	chr19:6750644:+	TCP1	16152	chr6:160209175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	TRIP10->chr19:6737936-6751537:+,thyroid_hormone_receptor_interactor_10,TCP1->chr6:160199530-160210781:-,t-complex_1	SNU1197_LARGE_INTESTINE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	RP11-281P23.1--RP11-281P23.2	1	2	RP11-281P23.1	1582	chr4:11471455:+	RP11-281P23.2	13426	chr4:11771933:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0096	0.0191	RP11-281P23.1->chr4:11470874-11479820:+,RP11-281P23.2->chr4:11627338-11815582:+	SNU1197_LARGE_INTESTINE	0.75	1	0.0287	TRUE	0	1	1	4	1	TRUE	ACH-000412
CFPAC1_PANCREAS	CBWD6--IFLTD1	22	9	CBWD6	25293	chr9:69218510:-	IFLTD1	44079	chr12:25673009:-	ONLY_REF_SPLICE	YES	161	0	0.16	1	0.2448	0.1002	CBWD6->COBW_domain_containing_6,chr9:69204538-69269662:-,IFLTD1->chr12:25562241-25801513:-	CFPAC1_PANCREAS	0.16	1	0.345	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	CCND1--PTMA	22	0	CCND1	5984	chr11:69466002:+	PTMA	16661	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2448	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CFPAC1_PANCREAS	1	1	0.2448	TRUE	0	0	0	2	0	TRUE	ACH-000138
CFPAC1_PANCREAS	CCND1--PTMA	14	0	CCND1	5984	chr11:69466002:+	PTMA	17242	chr2:232576651:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1558	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CFPAC1_PANCREAS	1	1	0.1558	TRUE	0	0	0	2	0	TRUE	ACH-000138
CFPAC1_PANCREAS	CTTNBP2NL--RP11-20E24.1	9	7	CTTNBP2NL	5077	chr1:112958886:+	RP11-20E24.1	20697	chr12:77009083:+	ONLY_REF_SPLICE	YES	24	0	0.4	1	0.1002	0.0779	CTTNBP2NL->CTTNBP2_N-terminal_like,chr1:112938803-113006078:+,RP11-20E24.1->chr12:76956074-77009211:+	CFPAC1_PANCREAS	0.4	1	0.1781	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	MRPL45--GPR179	10	1	MRPL45	6883	chr17:36474634:+	GPR179	27604	chr17:36481450:-	INCL_NON_REF_SPLICE	YES	298	0	0.04	1	0.1113	0.0111	LOCAL_INVERSION:+:-:[2312],MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45,GPR179->G_protein-coupled_receptor_179,chr17:36481413-36499730:-	CFPAC1_PANCREAS	0.04	1	0.1224	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	AGPAT3--RRP1B	7	2	AGPAT3	19617	chr21:45387996:+	RRP1B	43794	chr21:45106685:+	ONLY_REF_SPLICE	YES	96	40	0.09	0.18	0.0779	0.0223	AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,RRP1B->chr21:45079429-45115958:+,ribosomal_RNA_processing_1B	CFPAC1_PANCREAS	0.09	0.18	0.1002	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	NCOA2--SNTG1	3	2	NCOA2	28633	chr8:71033537:-	SNTG1	56746	chr8:51569469:+	ONLY_REF_SPLICE	YES	7	0	0.42	1	0.0334	0.0223	{Klijn_CCL:Pancreas=1},NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,SNTG1->chr8:50822349-51706678:+,syntrophin_gamma_1	CFPAC1_PANCREAS	0.42	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	RRP7B--ANXA2	3	0	RRP7B	1110	chr22:42977935:-	ANXA2	31956	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	RRP7B->chr22:42951229-42978044:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	CFPAC1_PANCREAS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	CTTNBP2NL--ZDHHC17	2	3	CTTNBP2NL	5077	chr1:112958886:+	ZDHHC17	22989	chr12:77191214:+	ONLY_REF_SPLICE	YES	24	5	0.17	0.5	0.0223	0.0334	CTTNBP2NL->CTTNBP2_N-terminal_like,chr1:112938803-113006078:+,ZDHHC17->chr12:77157368-77247476:+,zinc_finger_DHHC-type_containing_17	CFPAC1_PANCREAS	0.17	0.5	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	AC009133.12--ALDOA	2	0	AC009133.12	2437	chr16:29830861:-	ALDOA	14780	chr16:30078555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	AC009133.12->chr16:29829301-29832573:-,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	AFAP1--ANKRD54	2	0	AFAP1	1271	chr4:7941383:-	ANKRD54	37280	chr22:38236241:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ANKRD54->ankyrin_repeat_domain_54,chr22:38226862-38245334:-	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	AFF1--LARS	2	0	AFF1	3385	chr4:87869723:+	LARS	38934	chr5:145552337:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	APOOL--SMEK1	2	0	APOOL	1102	chrX:84258933:+	SMEK1	14491	chr14:91957146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	APOOL->apolipoprotein_O_like,chrX:84258832-84343069:+,SMEK1->chr14:91923955-91976898:-	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	BRAT1--NPEPPS	2	0	BRAT1	3540	chr7:2586958:-	NPEPPS	43298	chr17:45697103:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	BRAT1->BRCA1_associated_ATM_activator_1,Oncogene{Bushman},chr7:2577511-2595361:-,NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	BTBD3--LEPRE1	2	0	BTBD3	1232	chr20:11871602:+	LEPRE1	16458	chr1:43228146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	BTBD3->BTB_domain_containing_3,chr20:11871371-11907257:+,LEPRE1->chr1:43212006-43232755:-	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	FBXL8--SLC44A4	2	0	FBXL8	2944	chr16:67195840:+	SLC44A4	15820	chr6:31837414:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	FBXL8->F-box_and_leucine-rich_repeat_protein_8,chr16:67193834-67198473:+,SLC44A4->Oncogene{Bushman},chr6:31830969-31846823:-,solute_carrier_family_44_member_4	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	5	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	HNRNPA2B1--SUPT6H	2	0	HNRNPA2B1	1958	chr7:26240192:-	SUPT6H	17777	chr17:27000389:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx&tcga_normals:1/3694=0.03%,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	LMAN1--PSMB1	2	0	LMAN1	11584	chr18:57005789:-	PSMB1	23543	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	MEIS1--RTN4	2	0	MEIS1	22370	chr2:66795888:+	RTN4	44279	chr2:55214834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	MEIS1->Meis_homeobox_1,Oncogene{Bushman},chr2:66660584-66801001:+,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	NRP1--EPC1	2	0	NRP1	4012	chr10:33619636:-	EPC1	41336	chr10:32594859:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NRP1->chr10:33466420-33625190:-,neuropilin_1,EPC1->chr10:32556679-32667726:-,enhancer_of_polycomb_homolog_1	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	STAG2--LRRC20	2	0	STAG2	2645	chrX:123095706:+	LRRC20	50823	chr10:72083786:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,LRRC20->chr10:72058729-72142382:-,leucine_rich_repeat_containing_20	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	WASH5P--GS1-251I9.4	2	0	WASH5P	3129	chr19:66346:-	GS1-251I9.4	15650	chr8:92075974:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	WASH5P->WAS_protein_family_homolog_5_pseudogene,chr19:60105-71626:-,GS1-251I9.4->chr8:92072137-92082417:-	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
HS675T_FIBROBLAST	RP11-334E6.12--MT2A	5	12	RP11-334E6.12	2039	chr11:119289699:+	MT2A	5557	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	347	0	0.05	1	0.0506	0.1215	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS675T_FIBROBLAST	0.05	1	0.1721	TRUE	0	0	0	7	0	TRUE	ACH-000214
HS675T_FIBROBLAST	RP11-334E6.12--MT2A	5	10	RP11-334E6.12	2052	chr11:119289712:+	MT2A	5570	chr16:56642516:+	INCL_NON_REF_SPLICE	YES	243	1	0.06	0.94	0.0506	0.1012	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS675T_FIBROBLAST	0.06	0.94	0.1518	TRUE	0	0	0	7	0	TRUE	ACH-000214
HS675T_FIBROBLAST	CTGF--TNFRSF11B	6	0	CTGF	1150	chr6:132272364:-	TNFRSF11B	7529	chr8:119964109:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,TNFRSF11B->Oncogene{Bushman},chr8:119935796-119964439:-,tumor_necrosis_factor_receptor_superfamily_member_11b	HS675T_FIBROBLAST	1	1	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000214
HS675T_FIBROBLAST	RP11-334E6.12--MT2A	3	5	RP11-334E6.12	2086	chr11:119289746:+	MT2A	5593	chr16:56642539:+	INCL_NON_REF_SPLICE	YES	2	2	0.8	0.8	0.0304	0.0506	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS675T_FIBROBLAST	0.8	0.8	0.081	TRUE	0	0	0	7	0	TRUE	ACH-000214
HS675T_FIBROBLAST	VIM--FTH1	4	0	VIM	2083	chr10:17271340:+	FTH1	12349	chr11:61734988:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	HS675T_FIBROBLAST	1	1	0.0405	TRUE	0	0	0	6	0	TRUE	ACH-000214
HS675T_FIBROBLAST	MXRA8--GAPDH	3	0	MXRA8	5511	chr1:1290198:-	GAPDH	14002	chr12:6646478:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	MXRA8->chr1:1288069-1297157:-,matrix-remodelling_associated_8,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	HS675T_FIBROBLAST	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000214
HS675T_FIBROBLAST	COL6A2--COL1A2	2	0	COL6A2	7243	chr21:47536317:+	COL1A2	31190	chr7:94035562:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS675T_FIBROBLAST	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000214
HS675T_FIBROBLAST	DIP2B--CLIC4	2	0	DIP2B	1256	chr12:50899023:+	CLIC4	51032	chr1:25124233:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B,CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+	HS675T_FIBROBLAST	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000214
HS675T_FIBROBLAST	RP3-510D11.1--GNAS	2	0	RP3-510D11.1	3450	chr1:9242066:-	GNAS	22287	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RP3-510D11.1->chr1:9242066-9262678:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HS675T_FIBROBLAST	1	1	0.0202	TRUE	0	0	0	2	0	TRUE	ACH-000214
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRMT10C--POU2F3	202	77	TRMT10C	1142	chr3:101280847:+	POU2F3	12402	chr11:120170333:+	ONLY_REF_SPLICE	YES	65	0	0.81	1	1.8057	0.6883	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	2.494	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6--IGH@	139	0	GAS6	15800	chr13:114525073:-	IGH@	118693	chr14:106312014:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2425	0	GTEx_FI:{Colon=[count:1=pct:0.5],Salivary_Gland=[count:1=pct:2.6]},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,IGH@->Oncogene{Bushman}	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2425	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLIP1--RILPL2	72	28	CLIP1	9296	chr12:122845506:-	RILPL2	44521	chr12:123915206:-	ONLY_REF_SPLICE	YES	31	44	0.76	0.69	0.6436	0.2503	{Klijn_CCL:Lymphoid=1},CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.76	0.8939	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2C--CTBP2P1	38	5	KMT2C	8616	chr7:151970790:-	CTBP2P1	74892	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	38	0	0.53	1	0.3397	0.0447	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	1	0.3844	TRUE	0	1	0	4	1	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOCAD--RP11-399D6.2	27	8	FOCAD	23993	chr9:20867011:+	RP11-399D6.2	67540	chr9:22723308:+	ONLY_REF_SPLICE	YES	57	1	0.38	0.97	0.2414	0.0715	FOCAD->chr9:20658308-20995954:+,focadhesin,RP11-399D6.2->chr9:22646199-22824212:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.97	0.3129	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYEOV--KIAA0125	21	11	MYEOV	1439	chr11:69062043:+	KIAA0125	15473	chr14:106386922:+	ONLY_REF_SPLICE	YES	326	0	0.09	1	0.1877	0.0983	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,KIAA0125->KIAA0125,chr14:106383838-106391825:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.286	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTF1--ASRGL1	16	11	RTF1	16305	chr15:41770823:+	ASRGL1	26120	chr11:62123797:+	ONLY_REF_SPLICE	YES	111	49	0.2	0.36	0.143	0.0983	RTF1->RTF1_homolog,_Paf1/RNA_polymerase_II_complex_component,chr15:41700606-41775761:+,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.36	0.2413	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRMT10C--POU2F3	1	32	TRMT10C	1142	chr3:101280847:+	POU2F3	14888	chr11:120172995:+	ONLY_REF_SPLICE	YES	65	10	0.34	0.77	0.0089	0.286	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.77	0.2949	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYEOV--KIAA0125	4	12	MYEOV	5305	chr11:69066895:+	KIAA0125	15473	chr14:106386922:+	ONLY_REF_SPLICE	YES	27	0	0.37	1	0.0358	0.1073	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,KIAA0125->KIAA0125,chr14:106383838-106391825:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	1	0.1431	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLIP1--RILPL2	4	11	CLIP1	9296	chr12:122845506:-	RILPL2	45673	chr12:123907704:-	ONLY_REF_SPLICE	YES	31	58	0.33	0.21	0.0358	0.0983	{Klijn_CCL:Lymphoid=1},CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.33	0.1341	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--RHOA	6	0	RCC1	2175	chr1:28834672:+	RHOA	22152	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	1	0	6	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGJ--SRP9	5	0	IGJ	5243	chr4:71527894:-	SRP9	11186	chr1:225965637:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	IGJ->chr4:71521258-71547534:-,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--NPM1	4	0	TXNDC5	2343	chr6:7910752:-	NPM1	18924	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0358	TRUE	0	0	0	5	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--RPLP1	3	0	IGL@	36403	chr22:23040632:+	RPLP1	74791	chr15:69745174:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	IGL@->Oncogene{Bushman},RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LILRB1--RPL39	3	0	LILRB1	7726	chr19:55146161:+	RPL39	13559	chrX:118925592:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	LILRB1->chr19:55085346-55148979:+,leukocyte_immunoglobulin_like_receptor_B1,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM2--IVD	3	0	TRIM2	9750	chr4:154197282:+	IVD	36890	chr15:40707600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2,IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM2--BAHD1	2	3	TRIM2	9750	chr4:154197282:+	BAHD1	31427	chr15:40750650:+	ONLY_REF_SPLICE	YES	16	29	0.24	0.15	0.0179	0.0268	TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2,BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.24	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001601.2--AP001605.4	2	0	AP001601.2	2234	chr21:28282349:+	AP001605.4	11109	chr21:28767900:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	AP001601.2->chr21:28261695-28312061:+,AP001605.4->chr21:28733483-28768106:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARFGEF2--MTA1	2	0	ARFGEF2	14953	chr20:47592736:+	MTA1	51922	chr14:105924607:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP6V1G1--ATRX	2	0	ATP6V1G1	1175	chr9:117350200:+	ATRX	31315	chrX:76876000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	ATP6V1G1->ATPase_H+_transporting_V1_subunit_G1,chr9:117350026-117360653:+,ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BFAR--PARN	2	0	BFAR	1204	chr16:14726875:+	PARN	39511	chr16:14649566:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:+:-:[87],BFAR->bifunctional_apoptosis_regulator,chr16:14726672-14763093:+,PARN->chr16:14529558-14726585:-,poly(A)-specific_ribonuclease	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C21orf91--AL109763.2	2	0	C21orf91	2195	chr21:19190509:-	AL109763.2	18650	chr21:20110343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	C21orf91->chr21:19161284-19191703:-,chromosome_21_open_reading_frame_91,AL109763.2->chr21:19933583-20132321:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--UBE2D2	2	0	RCC1	2175	chr1:28834672:+	UBE2D2	22302	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	20	0	3	11	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-114H21.2--CTB-1I21.1	1	4	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0089	0.0358	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0447	TRUE	0	2	0	12	2	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1L12.3--SLC5A12	2	0	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	14042	chr11:26737901:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	4	0	4	3	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SGCE--TRAP1	2	0	SGCE	12189	chr7:94228087:-	TRAP1	31974	chr16:3724495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon,TRAP1->Oncogene{Bushman},TNF_receptor_associated_protein_1,chr16:3701640-3767598:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG5--CEP128	2	0	SNHG5	1780	chr6:86387672:-	CEP128	36683	chr14:81209611:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM2--IVD	2	0	TRIM2	9750	chr4:154197282:+	IVD	36378	chr15:40707088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2,IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOCAD--RP11-399D6.2	1	2	FOCAD	21068	chr9:20862711:+	RP11-399D6.2	67540	chr9:22723308:+	ONLY_REF_SPLICE	YES	51	1	0.06	0.75	0.0089	0.0179	FOCAD->chr9:20658308-20995954:+,focadhesin,RP11-399D6.2->chr9:22646199-22824212:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.75	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOCAD--RP11-399D6.2	1	2	FOCAD	23993	chr9:20867011:+	RP11-399D6.2	68662	chr9:22820737:+	ONLY_REF_SPLICE	YES	57	3	0.05	0.5	0.0089	0.0179	FOCAD->chr9:20658308-20995954:+,focadhesin,RP11-399D6.2->chr9:22646199-22824212:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.5	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000745
TTC549_SOFT_TISSUE	ESRRA--RP11-783K16.10	82	62	ESRRA	2933	chr11:64074976:+	RP11-783K16.10	17255	chr11:64070954:+	ONLY_REF_SPLICE	YES	31	1	0.82	0.99	1.4737	1.1143	LOCAL_REARRANGEMENT:+:[803],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,RP11-783K16.10->chr11:64059194-64072241:+	TTC549_SOFT_TISSUE	0.82	0.99	2.588	TRUE	0	1	0	1	1	TRUE	ACH-001211
TTC549_SOFT_TISSUE	VPS35--MYLK3	28	1	VPS35	1388	chr16:46723043:-	MYLK3	39319	chr16:46746688:-	ONLY_REF_SPLICE	YES	6	1	0.83	0.97	0.5032	0.018	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[17461],VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-,MYLK3->chr16:46740891-46824319:-,myosin_light_chain_kinase_3	TTC549_SOFT_TISSUE	0.83	0.97	0.5212	TRUE	0	0	0	1	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	ESRRA--RP11-783K16.10	19	36	ESRRA	2933	chr11:64074976:+	RP11-783K16.10	17546	chr11:64071245:+	ONLY_REF_SPLICE	YES	31	1	0.64	0.98	0.3415	0.647	LOCAL_REARRANGEMENT:+:[803],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,RP11-783K16.10->chr11:64059194-64072241:+	TTC549_SOFT_TISSUE	0.64	0.98	0.9885	TRUE	0	1	0	1	1	TRUE	ACH-001211
TTC549_SOFT_TISSUE	ESRRA--RP11-783K16.10	3	61	ESRRA	2933	chr11:64074976:+	RP11-783K16.10	17260	chr11:64070959:+	INCL_NON_REF_SPLICE	YES	31	0	0.67	1	0.0539	1.0963	LOCAL_REARRANGEMENT:+:[803],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,RP11-783K16.10->chr11:64059194-64072241:+	TTC549_SOFT_TISSUE	0.67	1	1.1502	TRUE	0	1	0	1	1	TRUE	ACH-001211
TTC549_SOFT_TISSUE	RERE--VMP1	12	9	RERE	6711	chr1:8716032:-	VMP1	44154	chr17:57808782:+	ONLY_REF_SPLICE	YES	231	72	0.08	0.23	0.2157	0.1618	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TTC549_SOFT_TISSUE	0.08	0.23	0.3775	TRUE	0	0	0	1	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	SPTAN1--GLE1	10	5	SPTAN1	2990	chr9:131329256:+	GLE1	57746	chr9:131296040:+	ONLY_REF_SPLICE	YES	112	54	0.12	0.22	0.1797	0.0899	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[10299],SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	TTC549_SOFT_TISSUE	0.12	0.22	0.2696	TRUE	0	0	0	2	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	ANKS1A--UHRF1BP1	5	2	ANKS1A	9720	chr6:34962199:+	UHRF1BP1	31297	chr6:34789430:+	ONLY_REF_SPLICE	YES	28	21	0.2	0.25	0.0899	0.0359	LOCAL_REARRANGEMENT:+:[6127],ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,UHRF1BP1->UHRF1_binding_protein_1,chr6:34759857-34850915:+	TTC549_SOFT_TISSUE	0.2	0.25	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	NUP188--RP1-102D24.5	4	0	NUP188	21705	chr9:131752505:+	RP1-102D24.5	38569	chr22:45831915:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0719	0	NUP188->chr9:131709978-131769375:+,nucleoporin_188kDa,RP1-102D24.5->chr22:45831744-45844624:-	TTC549_SOFT_TISSUE	1	1	0.0719	TRUE	0	0	0	1	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	CKAP5--CELF1	2	0	CKAP5	3263	chr11:46842726:-	CELF1	56241	chr11:47510576:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5,CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-	TTC549_SOFT_TISSUE	1	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	YPEL2--VMP1	2	0	YPEL2	1136	chr17:57409185:+	VMP1	20364	chr17:57808782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	YPEL2->chr17:57409050-57479090:+,yippee_like_2,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TTC549_SOFT_TISSUE	1	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	ESRRA--RP11-783K16.10	1	1	ESRRA	1877	chr11:64073920:+	RP11-783K16.10	17255	chr11:64070954:+	ONLY_REF_SPLICE	YES	22	1	0.08	0.67	0.018	0.018	LOCAL_REARRANGEMENT:+:[803],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,RP11-783K16.10->chr11:64059194-64072241:+	TTC549_SOFT_TISSUE	0.08	0.67	0.036	TRUE	0	1	0	1	1	TRUE	ACH-001211
NUGC4_STOMACH	KPNA2--DHX40	1160	191	KPNA2	1322	chr17:66031956:+	DHX40	26577	chr17:57679883:+	ONLY_REF_SPLICE	YES	59	201	0.96	0.87	16.6361	2.7392	KPNA2->chr17:66031635-66042958:+,karyopherin_subunit_alpha_2,DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+	NUGC4_STOMACH	0.87	0.96	19.3753	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ARHGAP27--JMJD6	221	15	ARHGAP27	6815	chr17:43502930:-	JMJD6	27913	chr17:74718015:-	ONLY_REF_SPLICE	YES	10	96	0.96	0.71	3.1695	0.2151	ARHGAP27->Rho_GTPase_activating_protein_27,chr17:43471275-43511787:-,JMJD6->arginine_demethylase_and_lysine_hydroxylase,chr17:74708919-74722866:-	NUGC4_STOMACH	0.71	0.96	3.3846	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	EME1--KCNJ2	71	66	EME1	3067	chr17:48453554:+	KCNJ2	11986	chr17:68170965:+	ONLY_REF_SPLICE	YES	23	6	0.86	0.96	1.0182	0.9465	EME1->chr17:48450581-48458844:+,essential_meiotic_structure-specific_endonuclease_1,KCNJ2->chr17:68164814-68176189:+,potassium_voltage-gated_channel_subfamily_J_member_2	NUGC4_STOMACH	0.86	0.96	1.9647	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	UNK--FAM104A	66	85	UNK	1385	chr17:73781065:+	FAM104A	25342	chr17:71223403:-	ONLY_REF_SPLICE	YES	143	286	0.51	0.35	0.9465	1.219	{Klijn_CCL:Stomach=1},UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A	NUGC4_STOMACH	0.35	0.51	2.1655	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	WSB1--HDAC5	68	66	WSB1	1360	chr17:25621461:+	HDAC5	18563	chr17:42195072:-	ONLY_REF_SPLICE	YES	245	12	0.35	0.92	0.9752	0.9465	{Klijn_CCL:Stomach=1},WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	NUGC4_STOMACH	0.35	0.92	1.9217	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	SLC9A3R1--TMEM105	45	94	SLC9A3R1	2807	chr17:72758312:+	TMEM105	15595	chr17:79287719:-	ONLY_REF_SPLICE	YES	652	9	0.18	0.94	0.6454	1.3481	SLC9A3R1->Oncogene{Bushman},SLC9A3_regulator_1,chr17:72744791-72765492:+,TMEM105->chr17:79285074-79304474:-,transmembrane_protein_105	NUGC4_STOMACH	0.18	0.94	1.9935	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	KPNA2--DHX40	13	208	KPNA2	1539	chr17:66032173:+	DHX40	26568	chr17:57679874:+	INCL_NON_REF_SPLICE	YES	190	212	0.54	0.51	0.1864	2.983	KPNA2->chr17:66031635-66042958:+,karyopherin_subunit_alpha_2,DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+	NUGC4_STOMACH	0.51	0.54	3.1694	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	CACTIN--ZFR2	38	25	CACTIN	10198	chr19:3613342:-	ZFR2	39888	chr19:3805049:-	INCL_NON_REF_SPLICE	YES	14	0	0.82	1	0.545	0.3585	CACTIN->cactin,_spliceosome_C_complex_subunit,chr19:3610639-3626813:-,ZFR2->chr19:3804022-3869030:-,zinc_finger_RNA_binding_protein_2	NUGC4_STOMACH	0.82	1	0.9035	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	SLC9A3R1--TMEM105	19	99	SLC9A3R1	2807	chr17:72758312:+	TMEM105	15529	chr17:79287785:-	ONLY_REF_SPLICE	YES	652	0	0.15	1	0.2725	1.4198	SLC9A3R1->Oncogene{Bushman},SLC9A3_regulator_1,chr17:72744791-72765492:+,TMEM105->chr17:79285074-79304474:-,transmembrane_protein_105	NUGC4_STOMACH	0.15	1	1.6923	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ACACA--ERC1	37	23	ACACA	13908	chr17:35687113:-	ERC1	112117	chr12:1553728:+	ONLY_REF_SPLICE	YES	156	28	0.28	0.68	0.5306	0.3299	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	NUGC4_STOMACH	0.28	0.68	0.8605	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	NSF--PLEKHM1	28	12	NSF	15332	chr17:44782220:+	PLEKHM1	39623	chr17:43535805:-	ONLY_REF_SPLICE	YES	152	49	0.21	0.45	0.4016	0.1721	NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,PLEKHM1->chr17:43513266-43568115:-,pleckstrin_homology_and_RUN_domain_containing_M1	NUGC4_STOMACH	0.21	0.45	0.5737	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	UNK--FAM104A	3	91	UNK	3104	chr17:73788559:+	FAM104A	25342	chr17:71223403:-	ONLY_REF_SPLICE	YES	131	286	0.42	0.25	0.043	1.3051	{Klijn_CCL:Stomach=1},UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A	NUGC4_STOMACH	0.25	0.42	1.3481	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	SLC25A26--C3orf83	23	8	SLC25A26	2761	chr3:66271553:+	C3orf83	32956	chr3:12556515:-	ONLY_REF_SPLICE	YES	28	0	0.53	1	0.3299	0.1147	SLC25A26->chr3:66119285-66438540:+,solute_carrier_family_25_member_26,C3orf83->chr3:12556433-12602558:-	NUGC4_STOMACH	0.53	1	0.4446	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	UNK--FAM104A	1	88	UNK	2645	chr17:73788100:+	FAM104A	25342	chr17:71223403:-	ONLY_REF_SPLICE	YES	149	286	0.37	0.24	0.0143	1.262	{Klijn_CCL:Stomach=1},UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A	NUGC4_STOMACH	0.24	0.37	1.2763	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	MTUS1--FGL1	17	18	MTUS1	16444	chr8:17570723:-	FGL1	44552	chr8:17749316:-	ONLY_REF_SPLICE	YES	317	115	0.1	0.23	0.2438	0.2581	YOSHIHARA_TCGA_num_samples[LUAD:2],LOCAL_REARRANGEMENT:-:[63463],MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,FGL1->chr8:17721889-17767874:-,fibrinogen_like_1	NUGC4_STOMACH	0.1	0.23	0.5019	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ARHGDIA--EME1	21	0	ARHGDIA	1109	chr17:79829174:-	EME1	8745	chr17:48452546:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3012	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,EME1->chr17:48450581-48458844:+,essential_meiotic_structure-specific_endonuclease_1	NUGC4_STOMACH	1	1	0.3012	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	UNK--FAM104A	9	48	UNK	1385	chr17:73781065:+	FAM104A	27505	chr17:71205907:-	ONLY_REF_SPLICE	YES	143	264	0.28	0.18	0.1291	0.6884	{Klijn_CCL:Stomach=1},UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A	NUGC4_STOMACH	0.18	0.28	0.8175	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	HGS--CCDC57	15	18	HGS	11777	chr17:79662253:+	CCDC57	24120	chr17:80159828:-	ONLY_REF_SPLICE	YES	185	22	0.15	0.6	0.2151	0.2581	HGS->chr17:79650356-79670168:+,hepatocyte_growth_factor-regulated_tyrosine_kinase_substrate,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	NUGC4_STOMACH	0.15	0.6	0.4732	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	METTL23--SPHK1	13	21	METTL23	2633	chr17:74725876:+	SPHK1	8024	chr17:74372774:+	INCL_NON_REF_SPLICE	YES	197	0	0.15	1	0.1864	0.3012	METTL23->chr17:74722912-74730018:+,methyltransferase_like_23,SPHK1->chr17:74372665-74383941:+,sphingosine_kinase_1	NUGC4_STOMACH	0.15	1	0.4876	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	HGS--CCDC57	10	29	HGS	11777	chr17:79662253:+	CCDC57	22634	chr17:80165924:-	ONLY_REF_SPLICE	YES	185	0	0.17	1	0.1434	0.4159	HGS->chr17:79650356-79670168:+,hepatocyte_growth_factor-regulated_tyrosine_kinase_substrate,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	NUGC4_STOMACH	0.17	1	0.5593	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	KIAA1522--LRRN2	16	5	KIAA1522	1305	chr1:33207790:+	LRRN2	20478	chr1:204589346:-	ONLY_REF_SPLICE	YES	37	2	0.36	0.91	0.2295	0.0717	KIAA1522->KIAA1522,chr1:33207486-33240571:+,LRRN2->chr1:204586298-204654861:-,leucine_rich_repeat_neuronal_2	NUGC4_STOMACH	0.36	0.91	0.3012	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	WSB1--HDAC5	11	25	WSB1	1360	chr17:25621461:+	HDAC5	20312	chr17:42188171:-	ONLY_REF_SPLICE	YES	245	40	0.13	0.47	0.1578	0.3585	{Klijn_CCL:Stomach=1},WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	NUGC4_STOMACH	0.13	0.47	0.5163	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ADAMTS9--TSEN2	12	8	ADAMTS9	27325	chr3:64579934:-	TSEN2	60403	chr3:12580660:+	ONLY_REF_SPLICE	YES	12	17	0.62	0.54	0.1721	0.1147	ADAMTS9->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_9,chr3:64501333-64673676:-,TSEN2->chr3:12525931-12581122:+,tRNA_splicing_endonuclease_subunit_2	NUGC4_STOMACH	0.54	0.62	0.2868	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	PLEKHA6--KIAA1522	12	7	PLEKHA6	2160	chr1:204340658:-	KIAA1522	36864	chr1:33233388:+	ONLY_REF_SPLICE	YES	34	142	0.36	0.12	0.1721	0.1004	PLEKHA6->chr1:204187979-204346793:-,pleckstrin_homology_domain_containing_A6,KIAA1522->KIAA1522,chr1:33207486-33240571:+	NUGC4_STOMACH	0.12	0.36	0.2725	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ARHGDIA--EME1	9	0	ARHGDIA	1109	chr17:79829174:-	EME1	9626	chr17:48453427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1291	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,EME1->chr17:48450581-48458844:+,essential_meiotic_structure-specific_endonuclease_1	NUGC4_STOMACH	1	1	0.1291	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	SLC25A26--BAP1	6	3	SLC25A26	2761	chr3:66271553:+	BAP1	31888	chr3:52437314:-	ONLY_REF_SPLICE	YES	28	1	0.24	0.9	0.086	0.043	SLC25A26->chr3:66119285-66438540:+,solute_carrier_family_25_member_26,BAP1->ArcherDX_panel,BRCA1_associated_protein_1,FoundationOne_panel,Oncogene{Bushman},chr3:52435029-52444366:-	NUGC4_STOMACH	0.24	0.9	0.129	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ARHGAP27--JMJD6	5	5	ARHGAP27	5476	chr17:43506989:-	JMJD6	27913	chr17:74718015:-	ONLY_REF_SPLICE	YES	3	96	0.77	0.09	0.0717	0.0717	ARHGAP27->Rho_GTPase_activating_protein_27,chr17:43471275-43511787:-,JMJD6->arginine_demethylase_and_lysine_hydroxylase,chr17:74708919-74722866:-	NUGC4_STOMACH	0.09	0.77	0.1434	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	MDM2--LYZ	6	0	MDM2	14358	chr12:69234186:+	LYZ	26387	chr12:69747397:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.086	0	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,LYZ->chr12:69742121-69748014:+,lysozyme	NUGC4_STOMACH	1	1	0.086	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	WSB1--HDAC5	4	8	WSB1	1360	chr17:25621461:+	HDAC5	21387	chr17:42171202:-	ONLY_REF_SPLICE	YES	245	45	0.05	0.21	0.0574	0.1147	{Klijn_CCL:Stomach=1},WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	NUGC4_STOMACH	0.05	0.21	0.1721	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	BAIAP2--RP11-1055B8.3	3	9	BAIAP2	17834	chr17:79073880:+	RP11-1055B8.3	36886	chr17:79349973:-	ONLY_REF_SPLICE	YES	200	0	0.06	1	0.043	0.1291	BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,RP11-1055B8.3->chr17:79349801-79359160:-	NUGC4_STOMACH	0.06	1	0.1721	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	HAAO--THADA	4	5	HAAO	3859	chr2:43010924:-	THADA	66004	chr2:43460021:-	ONLY_REF_SPLICE	YES	9	66	0.5	0.12	0.0574	0.0717	HAAO->3-hydroxyanthranilate_3,4-dioxygenase,chr2:42994229-43019733:-,THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-	NUGC4_STOMACH	0.12	0.5	0.1291	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ARHGDIA--EME1	5	0	ARHGDIA	1109	chr17:79829174:-	EME1	7617	chr17:48450511:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0717	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,EME1->chr17:48450581-48458844:+,essential_meiotic_structure-specific_endonuclease_1	NUGC4_STOMACH	1	1	0.0717	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ASPSCR1--ACBD4	4	4	ASPSCR1	18554	chr17:79970159:+	ACBD4	28280	chr17:43212708:+	ONLY_REF_SPLICE	YES	78	2	0.09	0.8	0.0574	0.0574	ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+,ACBD4->acyl-CoA_binding_domain_containing_4,chr17:43209967-43221548:+	NUGC4_STOMACH	0.09	0.8	0.1148	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	HAAO--THADA	3	5	HAAO	2775	chr2:43015669:-	THADA	66004	chr2:43460021:-	ONLY_REF_SPLICE	YES	11	66	0.42	0.11	0.043	0.0717	HAAO->3-hydroxyanthranilate_3,4-dioxygenase,chr2:42994229-43019733:-,THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-	NUGC4_STOMACH	0.11	0.42	0.1147	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	METTL23--SPHK1	3	5	METTL23	2633	chr17:74725876:+	SPHK1	9736	chr17:74375468:+	ONLY_REF_SPLICE	YES	197	9	0.04	0.47	0.043	0.0717	METTL23->chr17:74722912-74730018:+,methyltransferase_like_23,SPHK1->chr17:74372665-74383941:+,sphingosine_kinase_1	NUGC4_STOMACH	0.04	0.47	0.1147	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ARHGDIA--EME1	4	0	ARHGDIA	1109	chr17:79829174:-	EME1	7689	chr17:48450583:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,EME1->chr17:48450581-48458844:+,essential_meiotic_structure-specific_endonuclease_1	NUGC4_STOMACH	1	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ARHGDIA--KCNJ2	2	4	ARHGDIA	1109	chr17:79829174:-	KCNJ2	9716	chr17:68170965:+	ONLY_REF_SPLICE	YES	1	6	0.86	0.5	0.0287	0.0574	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,KCNJ2->chr17:68164814-68176189:+,potassium_voltage-gated_channel_subfamily_J_member_2	NUGC4_STOMACH	0.5	0.86	0.0861	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	FHIT--UQCRC1	2	4	FHIT	7819	chr3:60807613:-	UQCRC1	25533	chr3:48647438:-	ONLY_REF_SPLICE	YES	4	2	0.6	0.75	0.0287	0.0574	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,UQCRC1->chr3:48636435-48648409:-,ubiquinol-cytochrome_c_reductase_core_protein_I	NUGC4_STOMACH	0.6	0.75	0.0861	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	C14orf37--RTN4	2	0	C14orf37	2258	chr14:58758353:-	RTN4	35515	chr2:55214834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ETV6--PDIA5	2	0	ETV6	1307	chr12:11803094:+	PDIA5	23339	chr3:122808015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,PDIA5->chr3:122785909-122944074:+,protein_disulfide_isomerase_family_A_member_5	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	F11R--APOA2	2	0	F11R	3639	chr1:160990800:-	APOA2	15966	chr1:161192312:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	F11R->F11_receptor,chr1:160965001-160991138:-,chr1:160967747-161008752:-,APOA2->apolipoprotein_A2,chr1:161192082-161193421:-	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	FUBP1--IVNS1ABP	2	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NUGC4_STOMACH	1	1	0.0287	TRUE	1	4	0	16	0	TRUE	ACH-000674
NUGC4_STOMACH	NDUFA4--FAM129B	2	0	NDUFA4	1241	chr7:10979643:-	FAM129B	16137	chr9:130286125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,FAM129B->chr9:130267618-130341268:-,family_with_sequence_similarity_129_member_B	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	PTPRK--CBX3	2	0	PTPRK	17404	chr6:128505577:-	CBX3	55017	chr7:26242591:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,CBX3->chr7:26240782-26252976:+,chromobox_3	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	SLC25A45--ECI1	2	0	SLC25A45	2827	chr11:65149346:-	ECI1	18762	chr16:2290146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	SLC25A45->chr11:65142663-65151172:-,solute_carrier_family_25_member_45,ECI1->chr16:2289396-2302301:-,enoyl-CoA_delta_isomerase_1	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	SLC35E2B--REV1	2	0	SLC35E2B	6203	chr1:1602948:-	REV1	37436	chr2:100027329:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	SLC35E2B->chr1:1592939-1624167:-,solute_carrier_family_35_member_E2B,REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	208	60	IGKV2-30	1681	chr2:89544399:-	AC096579.7	9026	chr2:89130914:-	INCL_NON_REF_SPLICE	YES	36	0	0.88	1	1.5915	0.4591	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	2.0506	TRUE	0	0	0	4	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	36	28	IGKV2-30	1587	chr2:89544493:-	AC096579.7	9026	chr2:89130914:-	INCL_NON_REF_SPLICE	YES	60	0	0.52	1	0.2754	0.2142	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	1	0.4896	TRUE	0	0	0	4	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	6	23	IGKV2-30	1587	chr2:89544493:-	AC096579.7	9033	chr2:89130907:-	INCL_NON_REF_SPLICE	YES	60	2	0.33	0.94	0.0459	0.176	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.94	0.2219	TRUE	0	0	0	4	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	3	21	IGKV2-30	1681	chr2:89544399:-	AC096579.7	9070	chr2:89130870:-	INCL_NON_REF_SPLICE	YES	36	13	0.4	0.65	0.023	0.1607	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.65	0.1837	TRUE	0	0	0	4	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL136376.1--RPS28	5	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0383	TRUE	0	0	0	12	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXO1--RP11-172E9.2	4	2	FOXO1	2015	chr13:41239720:-	RP11-172E9.2	12287	chr13:40924439:-	INCL_NON_REF_SPLICE	YES	61	0	0.09	1	0.0306	0.0153	FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,RP11-172E9.2->chr13:40918094-40924440:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0459	TRUE	0	0	0	3	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL136376.1--RPS28	3	0	AL136376.1	2362	chr1:116915870:-	RPS28	5709	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.023	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	12	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4A2--LRMP	2	0	EIF4A2	5678	chr3:186505671:+	LRMP	40188	chr12:25259877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0153	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0153	TRUE	0	0	0	1	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM6--RHOA	2	0	RBM6	3185	chr3:50000118:+	RHOA	37115	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0153	0	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Pituitary=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0153	TRUE	0	4	1	6	1	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SAMD12--EIF3H	2	0	SAMD12	2373	chr8:119592954:-	EIF3H	26651	chr8:117738411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0153	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hypothalamus=1},SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0153	TRUE	0	0	0	2	0	TRUE	ACH-000786
DANG_PANCREAS	MELK--ZCCHC7	107	211	MELK	2433	chr9:36581736:+	ZCCHC7	33515	chr9:37302185:+	ONLY_REF_SPLICE	YES	274	35	0.54	0.9	1.061	2.0922	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.54	0.9	3.1532	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	35	217	MELK	3519	chr9:36583709:+	ZCCHC7	33515	chr9:37302185:+	ONLY_REF_SPLICE	YES	237	35	0.52	0.88	0.3471	2.1517	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.52	0.88	2.4988	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	ITGAV--ZC3H15	48	15	ITGAV	1459	chr2:187455250:+	ZC3H15	37906	chr2:187359960:+	ONLY_REF_SPLICE	YES	66	640	0.49	0.09	0.476	0.1487	LOCAL_REARRANGEMENT:+:[80702],ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V,ZC3H15->chr2:187350883-187374090:+,zinc_finger_CCCH-type_containing_15	DANG_PANCREAS	0.09	0.49	0.6247	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	20	117	MELK	1146	chr9:36573004:+	ZCCHC7	33515	chr9:37302185:+	ONLY_REF_SPLICE	YES	130	35	0.51	0.8	0.1983	1.1601	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.51	0.8	1.3584	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	8	158	MELK	2433	chr9:36581736:+	ZCCHC7	34559	chr9:37304185:+	ONLY_REF_SPLICE	YES	274	44	0.38	0.79	0.0793	1.5667	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.38	0.79	1.646	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	1	139	MELK	1337	chr9:36573195:+	ZCCHC7	33515	chr9:37302185:+	ONLY_REF_SPLICE	YES	281	35	0.33	0.8	0.0099	1.3783	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.33	0.8	1.3882	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	22	25	PUM2	14055	chr2:20494137:-	RBKS	33722	chr2:28093757:-	ONLY_REF_SPLICE	YES	172	7	0.21	0.87	0.2181	0.2479	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.21	0.87	0.466	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	23	21	PUM2	15194	chr2:20490413:-	RBKS	36975	chr2:28081438:-	ONLY_REF_SPLICE	YES	152	7	0.22	0.86	0.2281	0.2082	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.22	0.86	0.4363	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	2	92	MELK	1146	chr9:36573004:+	ZCCHC7	34559	chr9:37304185:+	ONLY_REF_SPLICE	YES	130	44	0.42	0.68	0.0198	0.9123	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.42	0.68	0.9321	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	3	78	MELK	2433	chr9:36581736:+	ZCCHC7	35685	chr9:37305541:+	ONLY_REF_SPLICE	YES	274	156	0.23	0.34	0.0297	0.7734	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.23	0.34	0.8031	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	14	34	PUM2	15194	chr2:20490413:-	RBKS	33722	chr2:28093757:-	ONLY_REF_SPLICE	YES	152	7	0.24	0.87	0.1388	0.3371	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.24	0.87	0.4759	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	1	81	MELK	3519	chr9:36583709:+	ZCCHC7	35685	chr9:37305541:+	ONLY_REF_SPLICE	YES	237	156	0.26	0.34	0.0099	0.8032	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.26	0.34	0.8131	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	13	15	PUM2	14055	chr2:20494137:-	RBKS	36975	chr2:28081438:-	ONLY_REF_SPLICE	YES	172	7	0.14	0.8	0.1289	0.1487	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.14	0.8	0.2776	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	3	45	MELK	1146	chr9:36573004:+	ZCCHC7	35685	chr9:37305541:+	ONLY_REF_SPLICE	YES	130	156	0.27	0.24	0.0297	0.4462	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.24	0.27	0.4759	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	1	50	MELK	1337	chr9:36573195:+	ZCCHC7	35685	chr9:37305541:+	ONLY_REF_SPLICE	YES	281	156	0.15	0.25	0.0099	0.4958	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.15	0.25	0.5057	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MACROD1--MEN1	11	6	MACROD1	3565	chr11:63918711:-	MEN1	14271	chr11:64578377:-	ONLY_REF_SPLICE	YES	179	0	0.09	1	0.1091	0.0595	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,MEN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:64570982-64578766:-,menin_1	DANG_PANCREAS	0.09	1	0.1686	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	KAT6B--DDX50	11	5	KAT6B	5638	chr10:76603236:+	DDX50	33697	chr10:70666467:+	ONLY_REF_SPLICE	YES	8	292	0.67	0.05	0.1091	0.0496	{Klijn_CCL:Pancreas=1},KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B,DDX50->DEAD-box_helicase_50,chr10:70661034-70706603:+	DANG_PANCREAS	0.05	0.67	0.1587	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	4	22	PUM2	15194	chr2:20490413:-	RBKS	35841	chr2:28084413:-	ONLY_REF_SPLICE	YES	152	7	0.15	0.79	0.0397	0.2181	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.15	0.79	0.2578	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	3	16	PUM2	14055	chr2:20494137:-	RBKS	35841	chr2:28084413:-	ONLY_REF_SPLICE	YES	172	7	0.1	0.73	0.0297	0.1587	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.1	0.73	0.1884	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	SCRN3--HYDIN	6	3	SCRN3	8341	chr2:175274953:+	HYDIN	51889	chr16:71026113:-	ONLY_REF_SPLICE	YES	61	0	0.13	1	0.0595	0.0297	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	DANG_PANCREAS	0.13	1	0.0892	TRUE	0	0	0	3	0	TRUE	ACH-000243
DANG_PANCREAS	RBKS--AC009411.1	6	1	RBKS	1842	chr2:28113124:-	AC009411.1	20343	chr2:21861410:-	ONLY_REF_SPLICE	YES	7	0	0.5	1	0.0595	0.0099	RBKS->chr2:28004231-28113965:-,ribokinase,AC009411.1->chr2:21861303-21872435:-	DANG_PANCREAS	0.5	1	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	RP11-475J5.5--KRT6A	6	0	RP11-475J5.5	1398	chr5:99390352:-	KRT6A	5361	chr12:52887041:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0595	0	RP11-475J5.5->chr5:99389390-99390749:-,KRT6A->chr12:52880958-52887041:-,keratin_6A	DANG_PANCREAS	1	1	0.0595	TRUE	0	0	0	2	0	TRUE	ACH-000243
DANG_PANCREAS	NUAK2--LINC00880	4	0	NUAK2	5167	chr1:205275316:-	LINC00880	15706	chr3:156801064:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	NUAK2->NUAK_family_kinase_2,chr1:205271187-205290883:-,LINC00880->chr3:156799456-156840793:-,long_intergenic_non-protein_coding_RNA_880	DANG_PANCREAS	1	1	0.0397	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	SCRN3--HYDIN	4	0	SCRN3	8341	chr2:175274953:+	HYDIN	52703	chr16:71025299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	DANG_PANCREAS	1	1	0.0397	TRUE	0	0	0	3	0	TRUE	ACH-000243
DANG_PANCREAS	TACC1--CTD-2024D23.1	3	4	TACC1	9302	chr8:38646337:+	CTD-2024D23.1	36038	chr8:39430763:+	ONLY_REF_SPLICE	YES	34	2	0.17	0.78	0.0297	0.0397	TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1,CTD-2024D23.1->chr8:39424224-39437653:+	DANG_PANCREAS	0.17	0.78	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	1	10	PUM2	14055	chr2:20494137:-	RBKS	38108	chr2:28070964:-	ONLY_REF_SPLICE	NO	172	15	0.06	0.42	0.0099	0.0992	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.06	0.42	0.1091	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	TANC2--KRT20	3	2	TANC2	3326	chr17:61176718:+	KRT20	52068	chr17:39038906:-	ONLY_REF_SPLICE	YES	40	4	0.11	0.56	0.0297	0.0198	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,KRT20->chr17:39032193-39041479:-,keratin_20	DANG_PANCREAS	0.11	0.56	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	DOCK4--ZNF277	3	0	DOCK4	1310	chr7:111846157:-	ZNF277	64080	chr7:111926928:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[177],DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,ZNF277->chr7:111846643-111983151:+,zinc_finger_protein_277	DANG_PANCREAS	1	1	0.0297	TRUE	0	3	0	1	2	TRUE	ACH-000243
DANG_PANCREAS	DOCK4--ZNF277	3	0	DOCK4	1310	chr7:111846157:-	ZNF277	69722	chr7:111967772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[177],DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,ZNF277->chr7:111846643-111983151:+,zinc_finger_protein_277	DANG_PANCREAS	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	G6PD--GAB3	3	0	G6PD	2537	chrX:153774251:-	GAB3	12956	chrX:153944604:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	G6PD->chrX:153759606-153775787:-,glucose-6-phosphate_dehydrogenase,GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-	DANG_PANCREAS	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	SCRN3--HYDIN	3	0	SCRN3	8341	chr2:175274953:+	HYDIN	53782	chr16:71022415:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	DANG_PANCREAS	1	1	0.0297	TRUE	0	0	0	3	0	TRUE	ACH-000243
DANG_PANCREAS	TANC2--KRT20	2	2	TANC2	3215	chr17:61176607:+	KRT20	52068	chr17:39038906:-	ONLY_REF_SPLICE	YES	34	4	0.11	0.5	0.0198	0.0198	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,KRT20->chr17:39032193-39041479:-,keratin_20	DANG_PANCREAS	0.11	0.5	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MACROD1--MEN1	2	1	MACROD1	2512	chr11:63919764:-	MEN1	14271	chr11:64578377:-	ONLY_REF_SPLICE	YES	72	0	0.04	1	0.0198	0.0099	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,MEN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:64570982-64578766:-,menin_1	DANG_PANCREAS	0.04	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	AC074389.9--C7orf50	2	0	AC074389.9	1083	chr7:1781845:-	C7orf50	7938	chr7:1167022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	AC074389.9->chr7:1778266-1781927:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	DANG_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	CIB1--PSMB1	2	0	CIB1	1379	chr15:90776901:-	PSMB1	10273	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CIB1->calcium_and_integrin_binding_1,chr15:90773207-90777279:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	DANG_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	HNRNPA2B1--TICAM2	2	0	HNRNPA2B1	9018	chr7:26232115:-	TICAM2	20532	chr5:114917012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,TICAM2->chr5:114914339-114961876:-,toll_like_receptor_adaptor_molecule_2	DANG_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	2	0	PUM2	2307	chr2:20550358:-	RBKS	36975	chr2:28081438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	RCC1--SKI	2	0	RCC1	2175	chr1:28834672:+	SKI	23186	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	DANG_PANCREAS	1	1	0.0198	TRUE	0	1	0	1	1	TRUE	ACH-000243
DANG_PANCREAS	TANGO6--CHTF8	2	0	TANGO6	21496	chr16:69008071:+	CHTF8	32064	chr16:69155396:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	LOCAL_INVERSION:+:-,chr16:[32830],TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,CHTF8->chr16:69151913-69166487:-,chr16:69152757-69154331:-,chromosome_transmission_fidelity_factor_8	DANG_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	UBA6-AS1--BMP2K	2	0	UBA6-AS1	1205	chr4:68567202:+	BMP2K	40696	chr4:79831764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	UBA6-AS1->UBA6_antisense_RNA_1_(head_to_head),chr4:68566998-68946670:+,BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+	DANG_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000243
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CYFIP2--PLCG2	18	4	CYFIP2	40402	chr5:156816435:+	PLCG2	60611	chr16:81902819:+	ONLY_REF_SPLICE	YES	35	9	0.39	0.71	0.223	0.0495	{Klijn_CCL:Lymphoid=1},CYFIP2->chr5:156693089-156822606:+,cytoplasmic_FMR1_interacting_protein_2,PLCG2->ArcherDX_panel,FoundationOne_panel,chr16:81772702-81991899:+,phospholipase_C_gamma_2	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.71	0.2725	TRUE	0	0	0	2	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AQR--SIRT1	2	0	AQR	6990	chr15:35236489:-	SIRT1	55257	chr10:69672231:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	AQR->aquarius_intron-binding_spliceosomal_factor,chr15:35147732-35262040:-,SIRT1->Oncogene{Bushman},chr10:69644427-69678147:+,sirtuin_1	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL8B--HMGB1	2	0	ARL8B	3548	chr3:5212241:+	HMGB1	17914	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	ARL8B->ADP_ribosylation_factor_like_GTPase_8B,chr3:5163905-5222596:+,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNTRL--HNRNPDL	2	0	CNTRL	33697	chr9:123919878:+	HNRNPDL	57066	chr4:83346036:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	CNTRL->Oncogene{Bushman},centriolin,chr9:123837141-123939888:+,HNRNPDL->chr4:83343717-83351294:-,heterogeneous_nuclear_ribonucleoprotein_D_like	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--ZNF331	2	0	FAM208B	1338	chr10:5727138:+	ZNF331	41120	chr19:54042470:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FYB--METTL14	2	0	FYB	2386	chr5:39270671:-	METTL14	40243	chr4:119618337:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	FYB->FYN_binding_protein,chr5:39105338-39274630:-,METTL14->chr4:119606523-119636588:+,methyltransferase_like_14	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INPP5D--RUVBL1	2	0	INPP5D	29465	chr2:234107022:+	RUVBL1	47869	chr3:127806651:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	INPP5D->chr2:233924677-234116549:+,inositol_polyphosphate-5-phosphatase_D,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGST1--RPL41	2	0	MGST1	5873	chr12:16507204:+	RPL41	24688	chr12:56510559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RPL41->chr12:56510370-56511727:+,ribosomal_protein_L41	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSTPIP2--PHF14	2	0	PSTPIP2	2458	chr18:43619913:-	PHF14	45431	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	PSTPIP2->chr18:43563502-43652238:-,proline-serine-threonine_phosphatase_interacting_protein_2,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV12-2--TRAJ22	1303	18	TRAV12-2	1641	chr14:22356677:+	TRAJ22	4645	chr14:22991014:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	15.8315	0.2187	HGNC_GENEFAM,TRAV12-2->T_cell_receptor_alpha_variable_12-2,chr14:22356037-22356682:+,TRAJ22->T_cell_receptor_alpha_joining_22,chr14:22991016-22991078:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	16.0502	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV12-2--TRAJ3	402	34	TRAV12-2	1650	chr14:22356686:+	TRAJ3	4656	chr14:23012131:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	4.8843	0.4131	HGNC_GENEFAM,TRAV12-2->T_cell_receptor_alpha_variable_12-2,chr14:22356037-22356682:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	5.2974	TRUE	1	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM9B--HCLS1	43	0	TMEM9B	1652	chr11:8985907:-	HCLS1	26041	chr3:121351323:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5225	0	TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5225	TRUE	1	0	0	2	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV12-2--TRAJ22	23	18	TRAV12-2	1641	chr14:22356677:+	TRAJ22	4644	chr14:22991013:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2795	0.2187	HGNC_GENEFAM,TRAV12-2->T_cell_receptor_alpha_variable_12-2,chr14:22356037-22356682:+,TRAJ22->T_cell_receptor_alpha_joining_22,chr14:22991016-22991078:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4982	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV12-2--TRAJ22	20	18	TRAV12-2	1639	chr14:22356675:+	TRAJ22	4644	chr14:22991013:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.243	0.2187	HGNC_GENEFAM,TRAV12-2->T_cell_receptor_alpha_variable_12-2,chr14:22356037-22356682:+,TRAJ22->T_cell_receptor_alpha_joining_22,chr14:22991016-22991078:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4617	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM9B--HCLS1	15	0	TMEM9B	1656	chr11:8985903:-	HCLS1	26033	chr3:121351331:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1823	0	TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1823	TRUE	1	0	0	2	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCLS1--TMEM9B	11	0	HCLS1	15346	chr3:121351299:-	TMEM9B	20017	chr11:8985941:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1337	0	HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1,TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1337	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCLS1--TMEM9B	3	0	HCLS1	15349	chr3:121351296:-	TMEM9B	20008	chr11:8985950:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1,TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AMMECR1--ACSL4	2	0	AMMECR1	6630	chrX:109507717:-	ACSL4	36899	chrX:108887415:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	AMMECR1->Alport_syndrome,_mental_retardation,_midface_hypoplasia_and_elliptocytosis_chromosomal_region_gene_1,chrX:109437414-109683461:-,ACSL4->acyl-CoA_synthetase_long-chain_family_member_4,chrX:108867473-108976632:-	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STRN4--MAPK14	2	0	STRN4	13332	chr19:47230709:-	MAPK14	29385	chr6:36041826:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	STRN4->chr19:47222764-47250251:-,striatin_4,MAPK14->Oncogene{Bushman},chr6:35995488-36079013:+,mitogen-activated_protein_kinase_14	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf53--RP11-265N7.2	1	1	C15orf53	1142	chr15:38988940:+	RP11-265N7.2	10113	chr15:39465180:+	ONLY_REF_SPLICE	YES	9	0	0.18	1	0.0122	0.0122	C15orf53->chr15:38988799-38992239:+,chromosome_15_open_reading_frame_53,RP11-265N7.2->chr15:39459940-39472231:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.0244	TRUE	1	0	0	1	0	TRUE	ACH-000612
SNUC4_LARGE_INTESTINE	TTC6--MIPOL1	13	7	TTC6	2242	chr14:38075947:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	3	4	0.87	0.83	0.1477	0.0795	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	SNUC4_LARGE_INTESTINE	0.83	0.87	0.2272	TRUE	0	13	0	3	11	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	LINC00511--SLC39A11	10	3	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	25	15	0.34	0.46	0.1136	0.0341	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	SNUC4_LARGE_INTESTINE	0.34	0.46	0.1477	TRUE	0	5	0	7	4	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	MECOM--LRRC31	6	2	MECOM	1283	chr3:169381124:-	LRRC31	35633	chr3:169587660:-	INCL_NON_REF_SPLICE	YES	14	0	0.36	1	0.0682	0.0227	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,LRRC31->chr3:169556967-169587718:-,leucine_rich_repeat_containing_31	SNUC4_LARGE_INTESTINE	0.36	1	0.0909	TRUE	0	4	0	2	4	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	IMPACT--CABYR	5	5	IMPACT	4369	chr18:22010348:+	CABYR	24492	chr18:21735665:+	ONLY_REF_SPLICE	YES	21	0	0.32	1	0.0568	0.0568	IMPACT->chr18:22006580-22033499:+,impact_RWD_domain_protein,CABYR->calcium_binding_tyrosine_phosphorylation_regulated,chr18:21718942-21741567:+	SNUC4_LARGE_INTESTINE	0.32	1	0.1136	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	LBR--HNRNPA1	5	0	LBR	10539	chr1:225600156:-	HNRNPA1	22768	chr12:54675579:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0568	0	LBR->chr1:225589204-225616627:-,lamin_B_receptor,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	SNUC4_LARGE_INTESTINE	1	1	0.0568	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	TTC6--MIPOL1	3	5	TTC6	1162	chr14:38065213:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	3	4	0.73	0.67	0.0341	0.0568	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	SNUC4_LARGE_INTESTINE	0.67	0.73	0.0909	TRUE	0	9	0	5	8	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	DLD--SLC26A4	4	0	DLD	2723	chr7:107533723:+	SLC26A4	41602	chr7:107355868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0	DLD->chr7:107531415-107572175:+,dihydrolipoamide_dehydrogenase,SLC26A4->chr7:107301080-107358254:+,solute_carrier_family_26_member_4	SNUC4_LARGE_INTESTINE	1	1	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	DCUN1D1--SAMD4B	3	0	DCUN1D1	4385	chr3:182683467:-	SAMD4B	23623	chr19:39842457:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	DCUN1D1->chr3:182655862-182703741:-,defective_in_cullin_neddylation_1_domain_containing_1,SAMD4B->chr19:39833036-39876350:+,sterile_alpha_motif_domain_containing_4B	SNUC4_LARGE_INTESTINE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	LUC7L2--HMGN2	3	0	LUC7L2	6712	chr7:139090512:+	HMGN2	18325	chr1:26801604:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+,HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2	SNUC4_LARGE_INTESTINE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	METRNL--GNAS	3	0	METRNL	3790	chr17:81043199:+	GNAS	26274	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	METRNL->chr17:81037567-81052864:+,meteorin,_glial_cell_differentiation_regulator-like,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNUC4_LARGE_INTESTINE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	REV3L--SEC62	3	0	REV3L	13487	chr6:111702528:-	SEC62	57678	chr3:169703593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,SEC62->SEC62_homolog,_preprotein_translocation_factor,chr3:169684423-169716161:+	SNUC4_LARGE_INTESTINE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	SYF2--DSTN	3	0	SYF2	5127	chr1:25554682:-	DSTN	14366	chr20:17581539:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	SYF2->SYF2_pre-mRNA_splicing_factor,chr1:25549170-25558993:-,DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor	SNUC4_LARGE_INTESTINE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	ABCD3--ARPC2	2	0	ABCD3	6938	chr1:94933563:+	ARPC2	40922	chr2:219104114:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+,ARPC2->actin_related_protein_2/3_complex_subunit_2,chr2:219081817-219119079:+	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	ABI2--CWC22	2	0	ABI2	1413	chr2:204193354:+	CWC22	45859	chr2:180858181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ABI2->abl-interactor_2,chr2:204192942-204312446:+,CWC22->CWC22_homolog,_spliceosome-associated_protein,chr2:180809603-180871840:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	ANKRD11--CHMP1A	2	0	ANKRD11	30739	chr16:89345480:-	CHMP1A	40529	chr16:89718054:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	BCLAF1--ATP5B	2	0	BCLAF1	16304	chr6:136582168:-	ATP5B	24531	chr12:57038739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-,ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	BSG--MGA	2	0	BSG	2405	chr19:572701:+	MGA	15946	chr15:41961026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	BSG--MIER3	2	0	BSG	2405	chr19:572701:+	MIER3	16754	chr5:56246479:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,MIER3->MIER_family_member_3,chr5:56215429-56267502:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	C11orf82--FDPS	2	0	C11orf82	2547	chr11:82612864:+	FDPS	22767	chr1:155287732:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	C11orf82->chr11:82611017-82669319:+,FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	C17orf76-AS1--RPL22	2	0	C17orf76-AS1	1593	chr17:16342728:+	RPL22	19126	chr1:6257816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	C17orf76-AS1->chr17:16342136-16381992:+,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	C2CD3--CTNND1	2	0	C2CD3	9194	chr11:73843889:-	CTNND1	77215	chr11:57583769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	C2CD3->C2_calcium-dependent_domain_containing_3,chr11:73723763-73882255:-,CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	CLCN3--FAT1	2	0	CLCN3	6612	chr4:170581599:+	FAT1	31838	chr4:187630999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CLCN3->chloride_voltage-gated_channel_3,chr4:170533784-170644824:+,FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	CYB5B--DHODH	2	0	CYB5B	1333	chr16:69458760:+	DHODH	24749	chr16:72057064:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B,DHODH->chr16:72042487-72058954:+,dihydroorotate_dehydrogenase_(quinone)	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	DNAJC11--SNRNP40	2	0	DNAJC11	3659	chr1:6738454:-	SNRNP40	28225	chr1:31754343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	DNAJC11->DnaJ_heat_shock_protein_family_(Hsp40)_member_C11,chr1:6694228-6761984:-,SNRNP40->chr1:31732417-31769662:-,small_nuclear_ribonucleoprotein_U5_subunit_40	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	ERBB2IP--NLN	2	0	ERBB2IP	1332	chr5:65222634:+	NLN	48091	chr5:65083945:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:+:[54750],ERBB2IP->chr5:65222303-65378377:+,NLN->chr5:65018023-65167553:+,neurolysin	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	GPHN--LRRK1	2	0	GPHN	2185	chr14:66975309:+	LRRK1	41735	chr15:101514009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,LRRK1->chr15:101459420-101610317:+,leucine-rich_repeat_kinase_1	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	IP6K2--PRKAR2A	2	0	IP6K2	6196	chr3:48754590:-	PRKAR2A	30492	chr3:48793877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:-:[4244],IP6K2->chr3:48725436-48777786:-,inositol_hexakisphosphate_kinase_2,PRKAR2A->chr3:48782030-48885279:-,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_alpha	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	1	0	1	1	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	IVNS1ABP--SATB2	2	0	IVNS1ABP	1377	chr1:185286085:-	SATB2	19494	chr2:200325255:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein,SATB2->SATB_homeobox_2,chr2:200134223-200335989:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	KIF26A--MTA1	2	0	KIF26A	5391	chr14:104633385:+	MTA1	19806	chr14:105905009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	KIF26A->chr14:104605060-104647231:+,kinesin_family_member_26A,MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	LIMCH1--APBB2	2	0	LIMCH1	2330	chr4:41362953:+	APBB2	70303	chr4:40895428:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=2,Breast_-_Mammary_Tissue=1},LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	NAA60--TSTD2	2	0	NAA60	5221	chr16:3493827:+	TSTD2	31094	chr9:100373981:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NAA60->N(alpha)-acetyltransferase_60,_NatF_catalytic_subunit,chr16:3415099-3536960:+,chr16:3493611-3536963:+,TSTD2->chr9:100362362-100395962:-,thiosulfate_sulfurtransferase_like_domain_containing_2	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	NARS--GPI	2	0	NARS	5050	chr18:55280834:-	GPI	20902	chr19:34859554:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NARS->asparaginyl-tRNA_synthetase,chr18:55267888-55289445:-,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	NOP56--MAP4	2	0	NOP56	2249	chr20:2634039:+	MAP4	33729	chr3:47919013:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NOP56->NOP56_ribonucleoprotein,chr20:2632791-2639039:+,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	PDZD8--KIAA1598	2	0	PDZD8	2112	chr10:119133867:-	KIAA1598	19791	chr10:118738819:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PDZD8->PDZ_domain_containing_8,chr10:119040000-119134978:-,KIAA1598->chr10:118643742-118886097:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	PYGB--REV1	2	0	PYGB	1353	chr20:25229057:+	REV1	27297	chr2:100081447:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PYGB->chr20:25228705-25278650:+,phosphorylase,_glycogen;_brain,REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	RP11-260M19.2--BCAR1	2	0	RP11-260M19.2	1233	chr14:104690153:+	BCAR1	20522	chr16:75276988:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RP11-260M19.2->chr14:104689921-104754406:+,BCAR1->BCAR1,_Cas_family_scaffolding_protein,chr16:75262928-75301951:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	RPL36A--FUT8	2	0	RPL36A	1999	chrX:100646810:+	FUT8	19595	chr14:66028055:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RPL36A->chrX:100645812-100651105:+,ribosomal_protein_L36a,FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	SEPT9--ITPKA	2	0	SEPT9	6917	chr17:75303279:+	ITPKA	48288	chr15:41793661:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,ITPKA->chr15:41785591-41795747:+,inositol-trisphosphate_3-kinase_A	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	SF3B1--NCKAP1	2	0	SF3B1	1120	chr2:198299696:-	NCKAP1	30136	chr2:183888644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	SHFM1--AASS	2	0	SHFM1	1204	chr7:96339000:-	AASS	37648	chr7:121733212:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,AASS->aminoadipate-semialdehyde_synthase,chr7:121715701-121784334:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	TRA2B--MARK3	2	0	TRA2B	5984	chr3:185649365:-	MARK3	48782	chr14:103969219:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	TRMT11--ECHDC1	2	0	TRMT11	12113	chr6:126334247:+	ECHDC1	30997	chr6:127611422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TRMT11->chr6:126307576-126360422:+,tRNA_methyltransferase_11_homolog,ECHDC1->chr6:127609855-127664754:-,ethylmalonyl-CoA_decarboxylase_1	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	UBA2--FBXL18	2	0	UBA2	6735	chr19:34925873:+	FBXL18	28081	chr7:5531080:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2,FBXL18->F-box_and_leucine-rich_repeat_protein_18,chr7:5470966-5553429:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	ZBTB7A--MAP2K2	2	0	ZBTB7A	4793	chr19:4053969:-	MAP2K2	18580	chr19:4102451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:-:[23376],ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A,MAP2K2->ArcherDX_panel,FoundationOne_panel,chr19:4090319-4124126:-,mitogen-activated_protein_kinase_kinase_2	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	IMPACT--CABYR	1	2	IMPACT	2432	chr18:22008011:+	CABYR	24495	chr18:21735668:+	ONLY_REF_SPLICE	YES	21	0	0.12	1	0.0114	0.0227	IMPACT->chr18:22006580-22033499:+,impact_RWD_domain_protein,CABYR->calcium_binding_tyrosine_phosphorylation_regulated,chr18:21718942-21741567:+	SNUC4_LARGE_INTESTINE	0.12	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	DNM2--MNT	1	1	DNM2	1325	chr19:10829079:+	MNT	44056	chr17:2298748:-	ONLY_REF_SPLICE	YES	34	3	0.06	0.4	0.0114	0.0114	DNM2->chr19:10828755-10944164:+,dynamin_2,MNT->MAX_network_transcriptional_repressor,chr17:2287354-2304412:-	SNUC4_LARGE_INTESTINE	0.06	0.4	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	TBC1D4--RP11-173B14.5	1	1	TBC1D4	11640	chr13:75900333:-	RP11-173B14.5	34473	chr13:76179081:-	ONLY_REF_SPLICE	YES	28	0	0.07	1	0.0114	0.0114	TBC1D4->TBC1_domain_family_member_4,chr13:75858808-76056250:-,RP11-173B14.5->chr13:76178836-76210130:-	SNUC4_LARGE_INTESTINE	0.07	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000959
HCC38_BREAST	PRMT1--BCL2L12	474	144	PRMT1	6651	chr19:50185516:+	BCL2L12	22148	chr19:50176955:+	ONLY_REF_SPLICE	YES	697	101	0.47	0.86	4.9043	1.4899	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[1870],PRMT1->chr19:50179043-50192286:+,protein_arginine_methyltransferase_1,BCL2L12->BCL2_like_12,Oncogene{Bushman},chr19:50168823-50177173:+	HCC38_BREAST	0.47	0.86	6.3942	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	TMEM123--MMP20	190	83	TMEM123	5695	chr11:102319543:-	MMP20	18036	chr11:102480761:-	ONLY_REF_SPLICE	YES	682	20	0.29	0.93	1.9659	0.8588	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Breast=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,MMP20->chr11:102447566-102496063:-,matrix_metallopeptidase_20	HCC38_BREAST	0.29	0.93	2.8247	TRUE	0	1	0	1	1	TRUE	ACH-000276
HCC38_BREAST	MTAP--PCDH7	155	61	MTAP	9899	chr9:21854869:+	PCDH7	30562	chr4:30921775:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.6037	0.6311	{Klijn_CCL:Breast=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,PCDH7->chr4:30722037-31148422:+,protocadherin_7	HCC38_BREAST	1	1	2.2348	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	SPRED1--BUB1B	103	45	SPRED1	4131	chr15:38591748:+	BUB1B	21494	chr15:40457254:+	ONLY_REF_SPLICE	YES	20	169	0.88	0.47	1.0657	0.4656	SPRED1->chr15:38544527-38649450:+,sprouty_related_EVH1_domain_containing_1,BUB1B->BUB1_mitotic_checkpoint_serine/threonine_kinase_B,Oncogene{Bushman},chr15:40453224-40513337:+	HCC38_BREAST	0.47	0.88	1.5313	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ATAD2--CTD-2207P18.1	82	32	ATAD2	3815	chr8:124408427:-	CTD-2207P18.1	36016	chr14:75026467:+	ONLY_REF_SPLICE	YES	314	0	0.27	1	0.8484	0.3311	ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,CTD-2207P18.1->chr14:75018884-75026751:+	HCC38_BREAST	0.27	1	1.1795	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	TMEM123--MMP20	54	100	TMEM123	5695	chr11:102319543:-	MMP20	16887	chr11:102482634:-	ONLY_REF_SPLICE	YES	682	0	0.18	1	0.5587	1.0347	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Breast=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,MMP20->chr11:102447566-102496063:-,matrix_metallopeptidase_20	HCC38_BREAST	0.18	1	1.5934	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	XRCC6--UQCC2	66	31	XRCC6	9366	chr22:42049694:+	UQCC2	18565	chr6:33669197:-	ONLY_REF_SPLICE	YES	1138	189	0.08	0.34	0.6829	0.3207	XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,UQCC2->chr6:33662070-33679504:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_2	HCC38_BREAST	0.08	0.34	1.0036	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MBOAT2--PRKCE	64	38	MBOAT2	8249	chr2:9022641:-	PRKCE	56074	chr2:46372232:+	ONLY_REF_SPLICE	YES	1	3	0.99	0.97	0.6622	0.3932	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},MBOAT2->chr2:8992820-9143942:-,membrane_bound_O-acyltransferase_domain_containing_2,PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon	HCC38_BREAST	0.97	0.99	1.0554	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	UBE2E1--COL24A1	61	24	UBE2E1	8346	chr3:23929190:+	COL24A1	53186	chr1:86315089:-	ONLY_REF_SPLICE	YES	509	2	0.14	0.98	0.6311	0.2483	{Klijn_CCL:Breast=1},UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1	HCC38_BREAST	0.14	0.98	0.8794	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	VPS37A--PIGN	55	30	VPS37A	5756	chr8:17126464:+	PIGN	37811	chr18:59805532:-	INCL_NON_REF_SPLICE	YES	23	48	0.79	0.64	0.5691	0.3104	VPS37A->VPS37A,_ESCRT-I_subunit,chr8:17104080-17159936:+,PIGN->chr18:59710800-59854351:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_N	HCC38_BREAST	0.64	0.79	0.8795	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	RNF111--TCF12	49	35	RNF111	2542	chr15:59280267:+	TCF12	40444	chr15:57484356:+	ONLY_REF_SPLICE	YES	32	95	0.72	0.47	0.507	0.3621	RNF111->chr15:59157374-59389618:+,ring_finger_protein_111,TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12	HCC38_BREAST	0.47	0.72	0.8691	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PRMT1--BCL2L12	17	106	PRMT1	6457	chr19:50185322:+	BCL2L12	22148	chr19:50176955:+	ONLY_REF_SPLICE	YES	802	101	0.13	0.55	0.1759	1.0968	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[1870],PRMT1->chr19:50179043-50192286:+,protein_arginine_methyltransferase_1,BCL2L12->BCL2_like_12,Oncogene{Bushman},chr19:50168823-50177173:+	HCC38_BREAST	0.13	0.55	1.2727	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ARHGAP35--IGSF23	38	11	ARHGAP35	4681	chr19:47425613:+	IGSF23	22240	chr19:45127000:+	ONLY_REF_SPLICE	YES	132	0	0.27	1	0.3932	0.1138	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGSF23->chr19:45116940-45140081:+,immunoglobulin_superfamily_member_23	HCC38_BREAST	0.27	1	0.507	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PRMT1--BCL2L12	3	145	PRMT1	6651	chr19:50185516:+	BCL2L12	21053	chr19:50175364:+	INCL_NON_REF_SPLICE	YES	697	119	0.18	0.55	0.031	1.5003	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[1870],PRMT1->chr19:50179043-50192286:+,protein_arginine_methyltransferase_1,BCL2L12->BCL2_like_12,Oncogene{Bushman},chr19:50168823-50177173:+	HCC38_BREAST	0.18	0.55	1.5313	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	TPD52--PAG1	37	2	TPD52	6214	chr8:81083660:-	PAG1	30869	chr8:81982405:-	ONLY_REF_SPLICE	YES	195	1	0.17	0.97	0.3828	0.0207	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,PAG1->chr8:81880045-82024303:-,phosphoprotein_membrane_anchor_with_glycosphingolipid_microdomains_1	HCC38_BREAST	0.17	0.97	0.4035	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PDZRN3--RP11-20B7.1	33	16	PDZRN3	4033	chr3:73651505:-	RP11-20B7.1	27159	chr3:73918927:+	ONLY_REF_SPLICE	YES	5	0	0.91	1	0.3414	0.1655	PDZRN3->PDZ_domain_containing_ring_finger_3,chr3:73431584-73674091:-,RP11-20B7.1->chr3:73857752-73952017:+	HCC38_BREAST	0.91	1	0.5069	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MED1--GSDMB	29	16	MED1	6915	chr17:37595418:-	GSDMB	28841	chr17:38073574:-	ONLY_REF_SPLICE	YES	107	23	0.3	0.66	0.3001	0.1655	MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,GSDMB->chr17:38060848-38076107:-,gasdermin_B	HCC38_BREAST	0.3	0.66	0.4656	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	27	15	COL24A1	47057	chr1:86282471:-	GSTM1	65034	chr1:110231295:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.2794	0.1552	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.98	1	0.4346	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	KMT2A--ATP5L	27	15	KMT2A	16644	chr11:118353210:+	ATP5L	59807	chr11:118301739:+	ONLY_REF_SPLICE	YES	59	0	0.42	1	0.2794	0.1552	LOCAL_REARRANGEMENT:+:[4994],KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,ATP5L->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_G,chr11:118271869-118302211:+	HCC38_BREAST	0.42	1	0.4346	TRUE	0	1	0	1	1	TRUE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	26	18	COL24A1	47057	chr1:86282471:-	GSTM1	64531	chr1:110230792:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.269	0.1862	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.98	1	0.4552	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MEF2A--RP11-183E24.1	28	9	MEF2A	12520	chr15:100215663:+	RP11-183E24.1	25427	chr15:98661401:+	INCL_NON_REF_SPLICE	YES	150	0	0.2	1	0.2897	0.0931	MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,RP11-183E24.1->chr15:98661400-98661549:+	HCC38_BREAST	0.2	1	0.3828	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	LCORL--RAB2A	26	13	LCORL	7877	chr4:17910717:-	RAB2A	32563	chr8:61531139:+	ONLY_REF_SPLICE	YES	0	198	1	0.16	0.269	0.1345	LCORL->chr4:17842822-18023499:-,ligand_dependent_nuclear_receptor_corepressor_like,RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+	HCC38_BREAST	0.16	1	0.4035	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	WDR70--NIPBL	26	6	WDR70	2427	chr5:37381787:+	NIPBL	27877	chr5:36953720:+	ONLY_REF_SPLICE	YES	100	28	0.24	0.53	0.269	0.0621	WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+,NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+	HCC38_BREAST	0.24	0.53	0.3311	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	STAT3--PTRF	23	12	STAT3	1290	chr17:40540297:-	PTRF	28979	chr17:40557406:-	ONLY_REF_SPLICE	YES	403	844	0.08	0.04	0.238	0.1242	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:-:[13884],STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3,PTRF->chr17:40554470-40575535:-,polymerase_I_and_transcript_release_factor	HCC38_BREAST	0.04	0.08	0.3622	TRUE	0	6	1	3	4	TRUE	ACH-000276
HCC38_BREAST	TMEM123--MMP20	1	100	TMEM123	6271	chr11:102318967:-	MMP20	16887	chr11:102482634:-	ONLY_REF_SPLICE	NO	711	0	0.12	1	0.0103	1.0347	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Breast=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,MMP20->chr11:102447566-102496063:-,matrix_metallopeptidase_20	HCC38_BREAST	0.12	1	1.045	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	SLC26A6--PRKAR2A	21	8	SLC26A6	8505	chr3:48665379:-	PRKAR2A	17330	chr3:48828060:-	ONLY_REF_SPLICE	YES	27	58	0.52	0.33	0.2173	0.0828	Cosmic{samples=2,mutations=2,papers=1},Mitelman{CA_ad=1},{Klijn_CCL:Breast=1},SLC26A6->chr3:48663156-48672926:-,solute_carrier_family_26_member_6,PRKAR2A->chr3:48782030-48885279:-,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_alpha	HCC38_BREAST	0.33	0.52	0.3001	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PRKCE--MBOAT2	19	13	PRKCE	30038	chr2:46313501:+	MBOAT2	48366	chr2:9028203:-	ONLY_REF_SPLICE	YES	4	5	0.89	0.86	0.1966	0.1345	{Klijn_CCL:Breast=1},PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,MBOAT2->chr2:8992820-9143942:-,membrane_bound_O-acyltransferase_domain_containing_2	HCC38_BREAST	0.86	0.89	0.3311	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	HMGXB3--PPARGC1B	16	24	HMGXB3	10733	chr5:149406680:+	PPARGC1B	35409	chr5:149210330:+	ONLY_REF_SPLICE	YES	38	0	0.51	1	0.1655	0.2483	HMGXB3->HMG-box_containing_3,chr5:149379884-149432386:+,PPARGC1B->PPARG_coactivator_1_beta,chr5:149109861-149234585:+	HCC38_BREAST	0.51	1	0.4138	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ARHGAP35--IGSF23	21	3	ARHGAP35	4681	chr19:47425613:+	IGSF23	24664	chr19:45138701:+	ONLY_REF_SPLICE	YES	132	38	0.15	0.39	0.2173	0.031	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGSF23->chr19:45116940-45140081:+,immunoglobulin_superfamily_member_23	HCC38_BREAST	0.15	0.39	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	RP11-820L6.1--ZNF202	20	4	RP11-820L6.1	11286	chr11:122026259:-	ZNF202	21179	chr11:123598970:-	ONLY_REF_SPLICE	YES	0	11	1	0.69	0.2069	0.0414	RP11-820L6.1->chr11:122026130-122293579:-,ZNF202->chr11:123594885-123612383:-,zinc_finger_protein_202	HCC38_BREAST	0.69	1	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	AC092295.4--LSR	18	6	AC092295.4	2296	chr19:37025894:+	LSR	8870	chr19:35749848:+	ONLY_REF_SPLICE	YES	0	303	1	0.07	0.1862	0.0621	AC092295.4->chr19:37019220-37026137:+,LSR->chr19:35739233-35758867:+,lipolysis_stimulated_lipoprotein_receptor	HCC38_BREAST	0.07	1	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MED1--GSDMB	15	17	MED1	6915	chr17:37595418:-	GSDMB	28832	chr17:38073583:-	ONLY_REF_SPLICE	YES	107	22	0.23	0.59	0.1552	0.1759	MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,GSDMB->chr17:38060848-38076107:-,gasdermin_B	HCC38_BREAST	0.23	0.59	0.3311	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ARHGAP35--IGSF23	15	11	ARHGAP35	4681	chr19:47425613:+	IGSF23	22244	chr19:45127004:+	ONLY_REF_SPLICE	YES	132	0	0.16	1	0.1552	0.1138	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGSF23->chr19:45116940-45140081:+,immunoglobulin_superfamily_member_23	HCC38_BREAST	0.16	1	0.269	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	HMGXB3--PPARGC1B	13	19	HMGXB3	10733	chr5:149406680:+	PPARGC1B	36526	chr5:149212219:+	ONLY_REF_SPLICE	YES	38	4	0.46	0.89	0.1345	0.1966	HMGXB3->HMG-box_containing_3,chr5:149379884-149432386:+,PPARGC1B->PPARG_coactivator_1_beta,chr5:149109861-149234585:+	HCC38_BREAST	0.46	0.89	0.3311	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	UBE2E1--COL24A1	15	6	UBE2E1	6001	chr3:23853001:+	COL24A1	53186	chr1:86315089:-	ONLY_REF_SPLICE	YES	421	2	0.05	0.91	0.1552	0.0621	{Klijn_CCL:Breast=1},UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1	HCC38_BREAST	0.05	0.91	0.2173	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	NOS1AP--IFI16	15	5	NOS1AP	1509	chr1:162040072:+	IFI16	28048	chr1:158979793:+	ONLY_REF_SPLICE	YES	2	4	0.91	0.83	0.1552	0.0517	NOS1AP->chr1:162039564-162353321:+,nitric_oxide_synthase_1_adaptor_protein,IFI16->chr1:158969758-159024945:+,interferon_gamma_inducible_protein_16	HCC38_BREAST	0.83	0.91	0.2069	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	RNF111--TCF12	7	37	RNF111	4052	chr15:59296373:+	TCF12	40444	chr15:57484356:+	ONLY_REF_SPLICE	YES	29	95	0.6	0.32	0.0724	0.3828	RNF111->chr15:59157374-59389618:+,ring_finger_protein_111,TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12	HCC38_BREAST	0.32	0.6	0.4552	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	C7orf50--AC060834.3	15	3	C7orf50	3078	chr7:1166893:-	AC060834.3	21299	chr7:9808862:+	ONLY_REF_SPLICE	YES	318	0	0.05	1	0.1552	0.031	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,AC060834.3->chr7:9776951-9809142:+	HCC38_BREAST	0.05	1	0.1862	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ADAM9--RANGRF	14	6	ADAM9	13215	chr8:38884329:+	RANGRF	31120	chr17:8192097:+	INCL_NON_REF_SPLICE	YES	543	20	0.04	0.5	0.1449	0.0621	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,RANGRF->RAN_guanine_nucleotide_release_factor,chr17:8191815-8193410:+	HCC38_BREAST	0.04	0.5	0.207	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ADAM9--DDHD2	11	17	ADAM9	1292	chr8:38854679:+	DDHD2	54200	chr8:38130888:+	ONLY_REF_SPLICE	YES	594	4	0.05	0.88	0.1138	0.1759	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	HCC38_BREAST	0.05	0.88	0.2897	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	KCNS3--WRNIP1	12	10	KCNS3	1960	chr2:18060073:+	WRNIP1	16359	chr6:2768925:+	ONLY_REF_SPLICE	YES	5	126	0.81	0.15	0.1242	0.1035	KCNS3->chr2:18059114-18542882:+,potassium_voltage-gated_channel_modifier_subfamily_S_member_3,WRNIP1->Werner_helicase_interacting_protein_1,chr6:2765648-2787186:+	HCC38_BREAST	0.15	0.81	0.2277	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	11	4	COL24A1	47057	chr1:86282471:-	GSTM1	69466	chr1:110251103:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1138	0.0414	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.94	1	0.1552	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MIR100--ZNF202	11	2	MIR100	1064	chr11:122022953:-	ZNF202	10844	chr11:123598970:-	INCL_NON_REF_SPLICE	YES	0	11	1	0.54	0.1138	0.0207	MIR100->chr11:122022937-122023016:-,microRNA_100,ZNF202->chr11:123594885-123612383:-,zinc_finger_protein_202	HCC38_BREAST	0.54	1	0.1345	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ARHGAP35--PVR	10	3	ARHGAP35	4681	chr19:47425613:+	PVR	19923	chr19:45147260:+	INCL_NON_REF_SPLICE	YES	132	9	0.09	0.59	0.1035	0.031	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,PVR->chr19:45147098-45166850:+,poliovirus_receptor	HCC38_BREAST	0.09	0.59	0.1345	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ADAM9--DDHD2	5	17	ADAM9	1292	chr8:38854679:+	DDHD2	54203	chr8:38130891:+	INCL_NON_REF_SPLICE	YES	594	4	0.04	0.85	0.0517	0.1759	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	HCC38_BREAST	0.04	0.85	0.2276	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MED1--GSDMB	4	21	MED1	6915	chr17:37595418:-	GSDMB	27920	chr17:38074495:-	INCL_NON_REF_SPLICE	YES	107	9	0.19	0.74	0.0414	0.2173	MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,GSDMB->chr17:38060848-38076107:-,gasdermin_B	HCC38_BREAST	0.19	0.74	0.2587	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	KCNS3--WRNIP1	8	4	KCNS3	1960	chr2:18060073:+	WRNIP1	18793	chr6:2779497:+	ONLY_REF_SPLICE	YES	5	266	0.71	0.04	0.0828	0.0414	KCNS3->chr2:18059114-18542882:+,potassium_voltage-gated_channel_modifier_subfamily_S_member_3,WRNIP1->Werner_helicase_interacting_protein_1,chr6:2765648-2787186:+	HCC38_BREAST	0.04	0.71	0.1242	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PHTF1--LRIF1	8	2	PHTF1	2791	chr1:114300321:-	LRIF1	29726	chr1:111492745:-	ONLY_REF_SPLICE	YES	55	120	0.15	0.08	0.0828	0.0207	PHTF1->chr1:114239453-114302111:-,putative_homeodomain_transcription_factor_1,LRIF1->chr1:111489807-111506701:-,ligand_dependent_nuclear_receptor_interacting_factor_1	HCC38_BREAST	0.08	0.15	0.1035	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MED1--GSDMB	3	21	MED1	6915	chr17:37595418:-	GSDMB	27537	chr17:38074878:-	INCL_NON_REF_SPLICE	YES	107	8	0.18	0.75	0.031	0.2173	MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,GSDMB->chr17:38060848-38076107:-,gasdermin_B	HCC38_BREAST	0.18	0.75	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	WRNIP1--KCNS3	7	1	WRNIP1	2031	chr6:2766678:+	KCNS3	15858	chr2:18098947:+	ONLY_REF_SPLICE	YES	132	5	0.06	0.62	0.0724	0.0103	WRNIP1->Werner_helicase_interacting_protein_1,chr6:2765648-2787186:+,KCNS3->chr2:18059114-18542882:+,potassium_voltage-gated_channel_modifier_subfamily_S_member_3	HCC38_BREAST	0.06	0.62	0.0827	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	CTGF--RPS28	7	0	CTGF	1152	chr6:132272362:-	RPS28	7541	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0724	0	GTEx&tcga_normals:1/3694=0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC38_BREAST	1	1	0.0724	TRUE	0	0	0	5	0	TRUE	ACH-000276
HCC38_BREAST	FBXL17--PJA2	7	0	FBXL17	2400	chr5:107716400:-	PJA2	23130	chr5:108719221:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0724	0	FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-,PJA2->chr5:108670410-108745695:-,praja_ring_finger_ubiquitin_ligase_2	HCC38_BREAST	1	1	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	SCAPER--TM6SF1	7	0	SCAPER	10139	chr15:77092589:-	TM6SF1	53502	chr15:83781549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0724	0	{Klijn_CCL:Breast=1},SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-,TM6SF1->chr15:83776159-83813606:+,transmembrane_6_superfamily_member_1	HCC38_BREAST	1	1	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ATP6AP1L--MSH3	6	3	ATP6AP1L	2469	chr5:81576830:+	MSH3	43424	chr5:80074539:+	ONLY_REF_SPLICE	YES	2	18	0.82	0.33	0.0621	0.031	ATP6AP1L->ATPase_H+_transporting_accessory_protein_1_like,chr5:81575281-81682796:+,MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3	HCC38_BREAST	0.33	0.82	0.0931	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	RP11-739L10.1--ADCY8	6	0	RP11-739L10.1	4480	chr18:20279534:-	ADCY8	13097	chr8:131964244:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	RP11-739L10.1->chr18:20279444-20513727:-,ADCY8->adenylate_cyclase_8_(brain),chr8:131792547-132054672:-	HCC38_BREAST	1	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	WRNIP1--KCNS3	5	0	WRNIP1	2031	chr6:2766678:+	KCNS3	18278	chr2:18112217:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	WRNIP1->Werner_helicase_interacting_protein_1,chr6:2765648-2787186:+,KCNS3->chr2:18059114-18542882:+,potassium_voltage-gated_channel_modifier_subfamily_S_member_3	HCC38_BREAST	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	L3MBTL4--AC002472.11	4	3	L3MBTL4	22012	chr18:6093354:-	AC002472.11	37062	chr22:21396992:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0414	0.031	L3MBTL4->chr18:5954705-6415236:-,l(3)mbt-like_4_(Drosophila),AC002472.11->chr22:21385646-21398258:+	HCC38_BREAST	0.78	1	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MTAP--PCDH7	1	15	MTAP	8659	chr9:21838009:+	PCDH7	30562	chr4:30921775:+	ONLY_REF_SPLICE	NO	56	0	0.22	1	0.0103	0.1552	{Klijn_CCL:Breast=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,PCDH7->chr4:30722037-31148422:+,protocadherin_7	HCC38_BREAST	0.22	1	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	2	10	COL24A1	47057	chr1:86282471:-	GSTM1	65409	chr1:110231670:+	ONLY_REF_SPLICE	YES	1	8	0.92	0.6	0.0207	0.1035	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.6	0.92	0.1242	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PHTF1--LRIF1	3	6	PHTF1	2791	chr1:114300321:-	LRIF1	27198	chr1:111495437:-	ONLY_REF_SPLICE	YES	55	110	0.14	0.08	0.031	0.0621	PHTF1->chr1:114239453-114302111:-,putative_homeodomain_transcription_factor_1,LRIF1->chr1:111489807-111506701:-,ligand_dependent_nuclear_receptor_interacting_factor_1	HCC38_BREAST	0.08	0.14	0.0931	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ARHGAP35--IGSF23	1	11	ARHGAP35	4681	chr19:47425613:+	IGSF23	21123	chr19:45121387:+	ONLY_REF_SPLICE	NO	132	0	0.08	1	0.0103	0.1138	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGSF23->chr19:45116940-45140081:+,immunoglobulin_superfamily_member_23	HCC38_BREAST	0.08	1	0.1241	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	2	6	COL24A1	47057	chr1:86282471:-	GSTM1	66632	chr1:110232893:+	ONLY_REF_SPLICE	YES	1	7	0.89	0.53	0.0207	0.0621	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.53	0.89	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	1	9	COL24A1	47057	chr1:86282471:-	GSTM1	65586	chr1:110231847:+	ONLY_REF_SPLICE	YES	1	10	0.91	0.5	0.0103	0.0931	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.5	0.91	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MTAP--PCDH7	2	5	MTAP	9899	chr9:21854869:+	PCDH7	31779	chr4:30951742:+	ONLY_REF_SPLICE	YES	0	34	1	0.17	0.0207	0.0517	{Klijn_CCL:Breast=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,PCDH7->chr4:30722037-31148422:+,protocadherin_7	HCC38_BREAST	0.17	1	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MTAP--PCDH7	2	5	MTAP	9899	chr9:21854869:+	PCDH7	34105	chr4:31144095:+	ONLY_REF_SPLICE	YES	0	31	1	0.18	0.0207	0.0517	{Klijn_CCL:Breast=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,PCDH7->chr4:30722037-31148422:+,protocadherin_7	HCC38_BREAST	0.18	1	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	SPRED1--BUB1B	1	9	SPRED1	4131	chr15:38591748:+	BUB1B	23762	chr15:40462263:+	ONLY_REF_SPLICE	YES	20	139	0.33	0.07	0.0103	0.0931	SPRED1->chr15:38544527-38649450:+,sprouty_related_EVH1_domain_containing_1,BUB1B->BUB1_mitotic_checkpoint_serine/threonine_kinase_B,Oncogene{Bushman},chr15:40453224-40513337:+	HCC38_BREAST	0.07	0.33	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ARHGAP35--IGSF23	2	4	ARHGAP35	4681	chr19:47425613:+	IGSF23	23510	chr19:45130717:+	ONLY_REF_SPLICE	YES	132	9	0.04	0.4	0.0207	0.0414	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGSF23->chr19:45116940-45140081:+,immunoglobulin_superfamily_member_23	HCC38_BREAST	0.04	0.4	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	IMMP2L--AC003088.1	3	0	IMMP2L	12890	chr7:110526649:-	AC003088.1	22075	chr7:110072963:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	HCC38_BREAST	1	1	0.031	TRUE	0	1	0	2	1	TRUE	ACH-000276
HCC38_BREAST	KRT7--MPHOSPH8	3	0	KRT7	5580	chr12:52632559:+	MPHOSPH8	31619	chr13:20245346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	KRT7->chr12:52626304-52645970:+,keratin_7,MPHOSPH8->M-phase_phosphoprotein_8,chr13:20207788-20247599:+	HCC38_BREAST	1	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	L3MBTL4--AC002472.11	2	4	L3MBTL4	24110	chr18:6046727:-	AC002472.11	37062	chr22:21396992:+	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0207	0.0414	L3MBTL4->chr18:5954705-6415236:-,l(3)mbt-like_4_(Drosophila),AC002472.11->chr22:21385646-21398258:+	HCC38_BREAST	0.67	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ATP6AP1L--MSH3	2	3	ATP6AP1L	2469	chr5:81576830:+	MSH3	44541	chr5:80083384:+	ONLY_REF_SPLICE	YES	2	23	0.71	0.18	0.0207	0.031	ATP6AP1L->ATPase_H+_transporting_accessory_protein_1_like,chr5:81575281-81682796:+,MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3	HCC38_BREAST	0.18	0.71	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MTAP--PCDH7	1	7	MTAP	7556	chr9:21818201:+	PCDH7	30562	chr4:30921775:+	ONLY_REF_SPLICE	YES	62	0	0.11	1	0.0103	0.0724	{Klijn_CCL:Breast=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,PCDH7->chr4:30722037-31148422:+,protocadherin_7	HCC38_BREAST	0.11	1	0.0827	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	1	4	COL24A1	47057	chr1:86282471:-	GSTM1	67926	chr1:110235828:+	ONLY_REF_SPLICE	NO	1	18	0.83	0.22	0.0103	0.0414	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.22	0.83	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	CTDSPL2--RP11-387D10.2	2	0	CTDSPL2	9442	chr15:44789336:+	RP11-387D10.2	29290	chr15:91256530:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,RP11-387D10.2->chr15:91163239-91260372:-	HCC38_BREAST	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	GPR126--VTA1	2	0	GPR126	5956	chr6:142691930:+	VTA1	42986	chr6:142525122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	HCC38_BREAST	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	L3MBTL4--AC002472.11	1	4	L3MBTL4	23083	chr18:6080880:-	AC002472.11	37062	chr22:21396992:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0103	0.0414	L3MBTL4->chr18:5954705-6415236:-,l(3)mbt-like_4_(Drosophila),AC002472.11->chr22:21385646-21398258:+	HCC38_BREAST	0.62	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PTPN12--AP1G1	2	0	PTPN12	1371	chr7:77166962:+	AP1G1	33534	chr16:71808495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-	HCC38_BREAST	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	L3MBTL4--TUBA3GP	1	2	L3MBTL4	24110	chr18:6046727:-	TUBA3GP	37138	chr22:21421240:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0103	0.0207	L3MBTL4->chr18:5954705-6415236:-,l(3)mbt-like_4_(Drosophila),TUBA3GP->chr22:21419749-21424386:+,tubulin_alpha_3g_pseudogene	HCC38_BREAST	0.5	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	L3MBTL4--TUBA3GP	1	2	L3MBTL4	23083	chr18:6080880:-	TUBA3GP	37138	chr22:21421240:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0103	0.0207	L3MBTL4->chr18:5954705-6415236:-,l(3)mbt-like_4_(Drosophila),TUBA3GP->chr22:21419749-21424386:+,tubulin_alpha_3g_pseudogene	HCC38_BREAST	0.5	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	RP11-820L6.1--ZNF202	1	2	RP11-820L6.1	10204	chr11:122051044:-	ZNF202	21179	chr11:123598970:-	ONLY_REF_SPLICE	YES	0	11	1	0.21	0.0103	0.0207	RP11-820L6.1->chr11:122026130-122293579:-,ZNF202->chr11:123594885-123612383:-,zinc_finger_protein_202	HCC38_BREAST	0.21	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	CTC-432M15.3--AC034228.7	1	1	CTC-432M15.3	1154	chr5:131132523:-	AC034228.7	50074	chr5:131154556:-	ONLY_REF_SPLICE	YES	19	0	0.1	1	0.0103	0.0103	LOCAL_REARRANGEMENT:-:[10140],CTC-432M15.3->chr5:130761584-131132676:-,AC034228.7->chr5:131142816-131281391:-	HCC38_BREAST	0.1	1	0.0206	TRUE	0	0	0	2	0	TRUE	ACH-000276
HCC38_BREAST	L3MBTL4--TUBA3GP	1	1	L3MBTL4	22012	chr18:6093354:-	TUBA3GP	37138	chr22:21421240:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0103	0.0103	L3MBTL4->chr18:5954705-6415236:-,l(3)mbt-like_4_(Drosophila),TUBA3GP->chr22:21419749-21424386:+,tubulin_alpha_3g_pseudogene	HCC38_BREAST	0.5	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	LDHC--SERGEF	1	1	LDHC	1537	chr11:18434390:+	SERGEF	35821	chr11:17809960:-	ONLY_REF_SPLICE	YES	0	9	1	0.18	0.0103	0.0103	LDHC->chr11:18433854-18473605:+,lactate_dehydrogenase_C,SERGEF->chr11:17809595-18034709:-,secretion_regulating_guanine_nucleotide_exchange_factor	HCC38_BREAST	0.18	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	LDHC--SERGEF	1	1	LDHC	2655	chr11:18436848:+	SERGEF	35821	chr11:17809960:-	ONLY_REF_SPLICE	YES	0	9	1	0.18	0.0103	0.0103	LDHC->chr11:18433854-18473605:+,lactate_dehydrogenase_C,SERGEF->chr11:17809595-18034709:-,secretion_regulating_guanine_nucleotide_exchange_factor	HCC38_BREAST	0.18	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	RP11-277A4.4--CSMD2	1	1	RP11-277A4.4	2182	chr1:32520072:-	CSMD2	13290	chr1:34312597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0103	0.0103	RP11-277A4.4->chr1:32517892-32539075:-,CSMD2->CUB_and_Sushi_multiple_domains_2,chr1:33979609-34631443:-	HCC38_BREAST	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000276
GOS3_CENTRAL_NERVOUS_SYSTEM	CLPX--PARP16	201	49	CLPX	4248	chr15:65471272:-	PARP16	33927	chr15:65527161:-	ONLY_REF_SPLICE	YES	54	1	0.82	1	1.6998	0.4144	LOCAL_REARRANGEMENT:-:[49118],CLPX->caseinolytic_mitochondrial_matrix_peptidase_chaperone_subunit,chr15:65440557-65477680:-,PARP16->chr15:65526798-65592956:-,poly(ADP-ribose)_polymerase_family_member_16	GOS3_CENTRAL_NERVOUS_SYSTEM	0.82	1	2.1142	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MAZ--RP5-968D22.3	181	7	MAZ	5122	chr16:29821548:+	RP5-968D22.3	12360	chr1:168454969:-	ONLY_REF_SPLICE	YES	145	0	0.56	1	1.5307	0.0592	MAZ->MYC_associated_zinc_finger_protein,chr16:29817427-29823649:+,RP5-968D22.3->chr1:168433452-168464882:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.56	1	1.5899	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	TNS3--TBRG4	75	29	TNS3	8632	chr7:47546505:-	TBRG4	50931	chr7:45148886:-	ONLY_REF_SPLICE	YES	184	6	0.36	0.95	0.6343	0.2452	TNS3->chr7:47314752-47622156:-,tensin_3,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	GOS3_CENTRAL_NERVOUS_SYSTEM	0.36	0.95	0.8795	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	SRM--ERRFI1	69	7	SRM	2225	chr1:11118857:-	ERRFI1	14615	chr1:8064618:-	ONLY_REF_SPLICE	YES	96	0	0.44	1	0.5835	0.0592	SRM->chr1:11114641-11120081:-,spermidine_synthase,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.6427	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	VWC2--TNS3	46	8	VWC2	4382	chr7:49842436:+	TNS3	27076	chr7:47520739:-	ONLY_REF_SPLICE	YES	0	180	1	0.23	0.389	0.0677	VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2,TNS3->chr7:47314752-47622156:-,tensin_3	GOS3_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.4567	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	GTF3C1--DCTPP1	34	16	GTF3C1	5124	chr16:27544612:-	DCTPP1	43460	chr16:30441414:-	INCL_NON_REF_SPLICE	YES	28	0	0.64	1	0.2875	0.1353	GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1,DCTPP1->chr16:30434940-30441396:-,dCTP_pyrophosphatase_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.64	1	0.4228	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	VPS37A--PCM1	32	13	VPS37A	1799	chr8:17104878:+	PCM1	29544	chr8:17793098:+	ONLY_REF_SPLICE	YES	35	37	0.56	0.55	0.2706	0.1099	VPS37A->VPS37A,_ESCRT-I_subunit,chr8:17104080-17159936:+,PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.55	0.56	0.3805	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	VPS37A--PCM1	23	16	VPS37A	1799	chr8:17104878:+	PCM1	24420	chr8:17782222:+	ONLY_REF_SPLICE	YES	35	43	0.53	0.48	0.1945	0.1353	VPS37A->VPS37A,_ESCRT-I_subunit,chr8:17104080-17159936:+,PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.48	0.53	0.3298	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	XPO6--GTF3C1	19	4	XPO6	16330	chr16:28157415:-	GTF3C1	42256	chr16:27540042:-	ONLY_REF_SPLICE	YES	39	34	0.37	0.4	0.1607	0.0338	XPO6->chr16:28109300-28223241:-,exportin_6,GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.37	0.4	0.1945	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	SRM--ERRFI1	16	7	SRM	2225	chr1:11118857:-	ERRFI1	14620	chr1:8064613:-	INCL_NON_REF_SPLICE	YES	96	0	0.19	1	0.1353	0.0592	SRM->chr1:11114641-11120081:-,spermidine_synthase,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.1945	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	GTF3C1--DCTPP1	14	12	GTF3C1	5124	chr16:27544612:-	DCTPP1	44386	chr16:30440488:-	ONLY_REF_SPLICE	YES	28	72	0.48	0.27	0.1184	0.1015	GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1,DCTPP1->chr16:30434940-30441396:-,dCTP_pyrophosphatase_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.27	0.48	0.2199	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RP11-65J3.1--DNAJC6	13	3	RP11-65J3.1	6011	chr9:132104322:+	DNAJC6	25876	chr1:65854019:+	ONLY_REF_SPLICE	YES	13	6	0.55	0.73	0.1099	0.0254	RP11-65J3.1->chr9:132094579-132121817:+,DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.55	0.73	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	NOL6--GTF3C1	11	6	NOL6	12458	chr9:33462038:-	GTF3C1	24575	chr16:27518477:-	INCL_NON_REF_SPLICE	YES	16	44	0.52	0.28	0.093	0.0507	NOL6->chr9:33461439-33473928:-,nucleolar_protein_6,GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.28	0.52	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	NR6A1--AQP3	9	6	NR6A1	1291	chr9:127533299:-	AQP3	22314	chr9:33443890:-	ONLY_REF_SPLICE	YES	1	2	0.94	0.88	0.0761	0.0507	NR6A1->chr9:127279554-127533589:-,nuclear_receptor_subfamily_6_group_A_member_1,AQP3->aquaporin_3_(Gill_blood_group),chr9:33441152-33447609:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.88	0.94	0.1268	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	TRIM62--PRAMEF17	9	1	TRIM62	6647	chr1:33623854:-	PRAMEF17	12975	chr1:13716093:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0761	0.0085	TRIM62->Oncogene{Bushman},chr1:33611003-33647660:-,tripartite_motif_containing_62,PRAMEF17->PRAME_family_member_17,chr1:13716092-13719089:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	ARHGAP42--CNTN5	6	1	ARHGAP42	1180	chr11:100558563:+	CNTN5	61994	chr11:100168357:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0507	0.0085	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,CNTN5->chr11:98891683-100229616:+,contactin_5	GOS3_CENTRAL_NERVOUS_SYSTEM	0.64	1	0.0592	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	ANGPTL2--MVB12B	5	2	ANGPTL2	1569	chr9:129884594:-	MVB12B	15049	chr9:129102787:+	ONLY_REF_SPLICE	YES	0	8	1	0.47	0.0423	0.0169	ANGPTL2->angiopoietin_like_2,chr9:129849611-129885162:-,MVB12B->chr9:129089128-129269320:+,multivesicular_body_subunit_12B	GOS3_CENTRAL_NERVOUS_SYSTEM	0.47	1	0.0592	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RP11-123K19.1--CCDC101	5	2	RP11-123K19.1	1252	chr9:129375728:-	CCDC101	10491	chr16:28592376:+	ONLY_REF_SPLICE	YES	0	11	1	0.39	0.0423	0.0169	RP11-123K19.1->chr9:129351873-129375979:-,CCDC101->chr16:28565236-28603111:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.0592	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	VWC2--TNS3	4	6	VWC2	4382	chr7:49842436:+	TNS3	29414	chr7:47481653:-	ONLY_REF_SPLICE	YES	0	213	1	0.04	0.0338	0.0507	VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2,TNS3->chr7:47314752-47622156:-,tensin_3	GOS3_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0845	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	ARHGAP42--CNTN5	3	6	ARHGAP42	1180	chr11:100558563:+	CNTN5	52095	chr11:99941156:+	ONLY_REF_SPLICE	YES	4	0	0.69	1	0.0254	0.0507	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,CNTN5->chr11:98891683-100229616:+,contactin_5	GOS3_CENTRAL_NERVOUS_SYSTEM	0.69	1	0.0761	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MTAP--TEK	4	2	MTAP	12211	chr9:21859424:+	TEK	38168	chr9:27204909:+	ONLY_REF_SPLICE	YES	49	18	0.11	0.25	0.0338	0.0169	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.11	0.25	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	LMX1B--MAPKAP1	4	1	LMX1B	2127	chr9:129377848:+	MAPKAP1	40282	chr9:128206877:-	ONLY_REF_SPLICE	YES	0	78	1	0.06	0.0338	0.0085	LMX1B->LIM_homeobox_transcription_factor_1_beta,chr9:129376722-129463311:+,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MTAP--TEK	3	2	MTAP	9899	chr9:21854869:+	TEK	38168	chr9:27204909:+	ONLY_REF_SPLICE	YES	34	18	0.13	0.22	0.0254	0.0169	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.13	0.22	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	SRM--ERRFI1	1	8	SRM	2315	chr1:11118767:-	ERRFI1	14615	chr1:8064618:-	ONLY_REF_SPLICE	NO	121	0	0.07	1	0.0085	0.0677	SRM->chr1:11114641-11120081:-,spermidine_synthase,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0762	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	TNS3--TBRG4	3	0	TNS3	8632	chr7:47546505:-	TBRG4	54406	chr7:45145363:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	TNS3->chr7:47314752-47622156:-,tensin_3,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0254	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	AC009961.3--WDSUB1	2	1	AC009961.3	7019	chr2:160527219:-	WDSUB1	11460	chr2:160139604:-	ONLY_REF_SPLICE	YES	0	35	1	0.08	0.0169	0.0085	AC009961.3->chr2:160527219-160568946:-,WDSUB1->WD_repeat,_sterile_alpha_motif_and_U-box_domain_containing_1,chr2:160092304-160143310:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	CANX--RP11-1379J22.5	2	0	CANX	11365	chr5:179137066:+	RP11-1379J22.5	27899	chr5:179091324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	LOCAL_REARRANGEMENT:+:[14196],CANX->calnexin,chr5:179105629-179157926:+,RP11-1379J22.5->chr5:179084763-179091433:+	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	TPD52L2--HSPA5	2	0	TPD52L2	1142	chr20:62496737:+	HSPA5	15130	chr9:128003609:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	TPD52L2->chr20:62496596-62522898:+,tumor_protein_D52_like_2,HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	BBS9--C7orf69	1	1	BBS9	29146	chr7:33573788:+	C7orf69	35698	chr7:47853024:+	ONLY_REF_SPLICE	YES	15	1	0.12	0.67	0.0085	0.0085	BBS9->Bardet-Biedl_syndrome_9,chr7:33168856-33645680:+,C7orf69->chr7:47834889-47859445:+,chromosome_7_open_reading_frame_69	GOS3_CENTRAL_NERVOUS_SYSTEM	0.12	0.67	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000027
HOS_BONE	PAFAH1B2--FOXR1	1480	716	PAFAH1B2	2240	chr11:117023244:+	FOXR1	18967	chr11:118849492:+	ONLY_REF_SPLICE	YES	411	35	0.84	0.98	17.1157	8.2803	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	HOS_BONE	0.84	0.98	25.396	TRUE	0	0	0	2	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--FOXR1	132	371	PAFAH1B2	1152	chr11:117015134:+	FOXR1	18967	chr11:118849492:+	ONLY_REF_SPLICE	YES	223	35	0.69	0.93	1.5265	4.2905	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	HOS_BONE	0.69	0.93	5.817	TRUE	0	0	0	3	0	TRUE	ACH-000613
HOS_BONE	SIK3--COLCA1	128	24	SIK3	1295	chr11:116968859:-	COLCA1	38462	chr11:111169391:-	ONLY_REF_SPLICE	YES	14	1	0.92	0.99	1.4803	0.2776	SIK3->Oncogene{Bushman},SIK_family_kinase_3,chr11:116714118-116969153:-,COLCA1->chr11:111164114-111175770:-,colorectal_cancer_associated_1	HOS_BONE	0.92	0.99	1.7579	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--FOXR1	3	372	PAFAH1B2	2240	chr11:117023244:+	FOXR1	19142	chr11:118849667:+	ONLY_REF_SPLICE	YES	411	54	0.48	0.87	0.0347	4.302	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	HOS_BONE	0.48	0.87	4.3367	TRUE	0	0	0	2	0	TRUE	ACH-000613
HOS_BONE	TTC3--EPHA5	65	23	TTC3	7596	chr21:38459701:+	EPHA5	68163	chr4:66509145:-	ONLY_REF_SPLICE	YES	22	4	0.8	0.96	0.7517	0.266	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,EPHA5->ArcherDX_panel,EPH_receptor_A5,FoundationOne_panel,chr4:66185281-66536213:-	HOS_BONE	0.8	0.96	1.0177	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	DPYSL3--FMNL2	48	36	DPYSL3	1579	chr5:146889041:-	FMNL2	38926	chr2:153471365:+	ONLY_REF_SPLICE	YES	141	40	0.37	0.68	0.5551	0.4163	DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3,FMNL2->chr2:153191751-153506348:+,formin_like_2	HOS_BONE	0.37	0.68	0.9714	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--FOXR1	5	195	PAFAH1B2	1152	chr11:117015134:+	FOXR1	19142	chr11:118849667:+	ONLY_REF_SPLICE	YES	223	54	0.47	0.79	0.0578	2.2551	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	HOS_BONE	0.47	0.79	2.3129	TRUE	0	0	0	3	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--FOXR1	3	195	PAFAH1B2	2240	chr11:117023244:+	FOXR1	19200	chr11:118849725:+	INCL_NON_REF_SPLICE	YES	411	216	0.33	0.48	0.0347	2.2551	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	HOS_BONE	0.33	0.48	2.2898	TRUE	0	0	0	2	0	TRUE	ACH-000613
HOS_BONE	EXOC2--MET	50	6	EXOC2	1099	chr6:693019:-	MET	44972	chr7:116395409:+	ONLY_REF_SPLICE	YES	18	50	0.76	0.53	0.5782	0.0694	EXOC2->chr6:485133-693117:-,exocyst_complex_component_2,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HOS_BONE	0.53	0.76	0.6476	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--CCDC84	23	40	PAFAH1B2	2240	chr11:117023244:+	CCDC84	17966	chr11:118869140:+	ONLY_REF_SPLICE	YES	411	203	0.13	0.24	0.266	0.4626	{Klijn_CCL:Sarcomatoid=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,CCDC84->chr11:118868852-118886501:+,coiled-coil_domain_containing_84	HOS_BONE	0.13	0.24	0.7286	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--CCDC84	22	18	PAFAH1B2	2240	chr11:117023244:+	CCDC84	18547	chr11:118869721:+	ONLY_REF_SPLICE	YES	411	116	0.09	0.26	0.2544	0.2082	{Klijn_CCL:Sarcomatoid=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,CCDC84->chr11:118868852-118886501:+,coiled-coil_domain_containing_84	HOS_BONE	0.09	0.26	0.4626	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	UBASH3B--IL10RA	21	12	UBASH3B	1536	chr11:122526918:+	IL10RA	30431	chr11:117859097:+	ONLY_REF_SPLICE	YES	37	35	0.47	0.49	0.2429	0.1388	UBASH3B->chr11:122526383-122685181:+,ubiquitin_associated_and_SH3_domain_containing_B,IL10RA->chr11:117857063-117872196:+,interleukin_10_receptor_subunit_alpha	HOS_BONE	0.47	0.49	0.3817	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--CCDC84	14	29	PAFAH1B2	1152	chr11:117015134:+	CCDC84	17966	chr11:118869140:+	ONLY_REF_SPLICE	YES	223	203	0.16	0.17	0.1619	0.3354	{Klijn_CCL:Sarcomatoid=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,CCDC84->chr11:118868852-118886501:+,coiled-coil_domain_containing_84	HOS_BONE	0.16	0.17	0.4973	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--CCDC84	17	11	PAFAH1B2	1152	chr11:117015134:+	CCDC84	18547	chr11:118869721:+	ONLY_REF_SPLICE	YES	223	116	0.11	0.19	0.1966	0.1272	{Klijn_CCL:Sarcomatoid=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,CCDC84->chr11:118868852-118886501:+,coiled-coil_domain_containing_84	HOS_BONE	0.11	0.19	0.3238	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--FOXR1	3	63	PAFAH1B2	1155	chr11:117015137:+	FOXR1	19263	chr11:118849788:+	INCL_NON_REF_SPLICE	YES	272	266	0.2	0.2	0.0347	0.7286	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	HOS_BONE	0.2	0.2	0.7633	TRUE	0	0	0	3	0	TRUE	ACH-000613
HOS_BONE	UBASH3B--IL10RA	15	12	UBASH3B	1536	chr11:122526918:+	IL10RA	28733	chr11:117857399:+	ONLY_REF_SPLICE	YES	37	19	0.42	0.59	0.1735	0.1388	UBASH3B->chr11:122526383-122685181:+,ubiquitin_associated_and_SH3_domain_containing_B,IL10RA->chr11:117857063-117872196:+,interleukin_10_receptor_subunit_alpha	HOS_BONE	0.42	0.59	0.3123	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	CHCHD3--RP1-309H15.2	11	12	CHCHD3	2325	chr7:132754902:-	RP1-309H15.2	20719	chr6:22594062:-	ONLY_REF_SPLICE	YES	289	0	0.07	1	0.1272	0.1388	CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,RP1-309H15.2->chr6:22589366-22594062:-	HOS_BONE	0.07	1	0.266	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	TTC7A--FSHR	12	6	TTC7A	11117	chr2:47206046:+	FSHR	36088	chr2:49295429:-	ONLY_REF_SPLICE	YES	18	0	0.5	1	0.1388	0.0694	{Klijn_CCL:Sarcomatoid=1},TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A,FSHR->chr2:49189296-49381676:-,follicle_stimulating_hormone_receptor	HOS_BONE	0.5	1	0.2082	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	MTMR3--CABP7	9	10	MTMR3	1205	chr22:30279348:+	CABP7	34083	chr22:30123651:+	ONLY_REF_SPLICE	YES	18	1	0.51	0.95	0.1041	0.1156	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,CABP7->calcium_binding_protein_7,chr22:30116073-30127828:+	HOS_BONE	0.51	0.95	0.2197	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	TANC1--LINC00161	11	0	TANC1	4533	chr2:159954346:+	LINC00161	40366	chr21:29912375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1272	0	TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,LINC00161->chr21:29911640-29912677:+,long_intergenic_non-protein_coding_RNA_161	HOS_BONE	1	1	0.1272	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	CADM1--SYT12	7	2	CADM1	12738	chr11:115088612:-	SYT12	36503	chr11:66789340:+	ONLY_REF_SPLICE	YES	51	0	0.15	1	0.081	0.0231	CADM1->cell_adhesion_molecule_1,chr11:115039938-115375675:-,SYT12->chr11:66774249-66818334:+,synaptotagmin_12	HOS_BONE	0.15	1	0.1041	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	INPP5A--C10orf91	7	1	INPP5A	1352	chr10:134351675:+	C10orf91	23260	chr10:134259200:+	ONLY_REF_SPLICE	YES	2	2	0.8	0.8	0.081	0.0116	LOCAL_REARRANGEMENT:+:[88412],INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A,C10orf91->chr10:134257831-134262912:+,chromosome_10_open_reading_frame_91	HOS_BONE	0.8	0.8	0.0926	TRUE	0	1	0	1	1	TRUE	ACH-000613
HOS_BONE	PKNOX2--CNTN5	7	0	PKNOX2	1090	chr11:125034672:+	CNTN5	36334	chr11:99872766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.081	0	PKNOX2->PBX/knotted_1_homeobox_2,chr11:125034583-125303285:+,CNTN5->chr11:98891683-100229616:+,contactin_5	HOS_BONE	1	1	0.081	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	EXOC2--MET	5	7	EXOC2	3321	chr6:679367:-	MET	44972	chr7:116395409:+	INCL_NON_REF_SPLICE	YES	39	50	0.24	0.19	0.0578	0.081	EXOC2->chr6:485133-693117:-,exocyst_complex_component_2,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HOS_BONE	0.19	0.24	0.1388	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	RCC1--FAM192A	6	0	RCC1	2175	chr1:28834672:+	FAM192A	24869	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0694	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	HOS_BONE	1	1	0.0694	TRUE	0	3	0	3	0	TRUE	ACH-000613
HOS_BONE	ERG--LINC00240	5	1	ERG	4447	chr21:39947586:-	LINC00240	37014	chr6:26991033:+	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0578	0.0116	ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog,LINC00240->chr6:26924771-26991703:+,long_intergenic_non-protein_coding_RNA_240	HOS_BONE	0.75	0.86	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	CASK--RP11-173M1.4	4	2	CASK	2647	chrX:41712368:-	RP11-173M1.4	44854	chr17:25673954:+	ONLY_REF_SPLICE	YES	61	0	0.09	1	0.0463	0.0231	CASK->calcium/calmodulin-dependent_serine_protein_kinase_(MAGUK_family),chrX:41374187-41782716:-,RP11-173M1.4->chr17:25660282-25675517:+	HOS_BONE	0.09	1	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	TTC3--EPHA5	4	1	TTC3	1139	chr21:38445664:+	EPHA5	68163	chr4:66509145:-	ONLY_REF_SPLICE	YES	5	4	0.5	0.56	0.0463	0.0116	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,EPHA5->ArcherDX_panel,EPH_receptor_A5,FoundationOne_panel,chr4:66185281-66536213:-	HOS_BONE	0.5	0.56	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	TMEM25--TECTA	3	1	TMEM25	4315	chr11:118405070:+	TECTA	23513	chr11:121008130:+	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.0347	0.0116	{Klijn_CCL:Sarcomatoid=1},TMEM25->chr11:118401756-118417995:+,transmembrane_protein_25,TECTA->Oncogene{Bushman},chr11:120971882-121062202:+,tectorin_alpha	HOS_BONE	0.33	1	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	TTC7A--FSHR	2	3	TTC7A	11117	chr2:47206046:+	FSHR	37160	chr2:49247299:-	ONLY_REF_SPLICE	YES	18	0	0.22	1	0.0231	0.0347	{Klijn_CCL:Sarcomatoid=1},TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A,FSHR->chr2:49189296-49381676:-,follicle_stimulating_hormone_receptor	HOS_BONE	0.22	1	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	EXOC2--MET	1	6	EXOC2	2173	chr6:689139:-	MET	44972	chr7:116395409:+	ONLY_REF_SPLICE	YES	42	50	0.14	0.12	0.0116	0.0694	EXOC2->chr6:485133-693117:-,exocyst_complex_component_2,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HOS_BONE	0.12	0.14	0.081	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	RP11-58A17.4--ANKS1B	2	1	RP11-58A17.4	1659	chr12:58482333:+	ANKS1B	36047	chr12:99350182:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0.0116	RP11-58A17.4->chr12:58481675-58487145:+,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	HOS_BONE	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	EXD3--EHMT1	2	0	EXD3	1149	chr9:140317566:-	EHMT1	37413	chr9:140611078:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1},EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	HOS_BONE	1	1	0.0231	TRUE	0	0	0	3	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--GNAS	2	0	PAFAH1B2	1152	chr11:117015134:+	GNAS	33514	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	PLGRKT--AIMP1	2	0	PLGRKT	3397	chr9:5431897:-	AIMP1	14134	chr4:107246142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PLGRKT->chr9:5357973-5437878:-,plasminogen_receptor_with_a_C-terminal_lysine,AIMP1->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_1,chr4:107236701-107270383:+	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	PPP3CB--PLA2G12B	2	0	PPP3CB	8909	chr10:75227311:-	PLA2G12B	24741	chr10:74701092:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PPP3CB->chr10:75196186-75255782:-,protein_phosphatase_3_catalytic_subunit_beta,PLA2G12B->chr10:74694928-74714536:-,phospholipase_A2_group_XIIB	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	RCC1--CBX3	2	0	RCC1	2175	chr1:28834672:+	CBX3	20687	chr7:26242591:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CBX3->chr7:26240782-26252976:+,chromobox_3	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	RNF114--ZFAS1	2	0	RNF114	1142	chr20:48553089:+	ZFAS1	15453	chr20:47905582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RNF114->chr20:48552948-48570429:+,ring_finger_protein_114,ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	TFRC--NCBP2	2	0	TFRC	16761	chr3:195785155:-	NCBP2	29797	chr3:196666303:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	ZFAS1--LAMTOR5-AS1	2	0	ZFAS1	2031	chr20:47895745:+	LAMTOR5-AS1	12556	chr1:110954795:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	HGNC_GENEFAM,ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,LAMTOR5-AS1->LAMTOR5_antisense_RNA_1,chr1:110925441-110974982:+	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	HIPK2--STARD4-AS1	1	3	HIPK2	9273	chr7:139305147:-	STARD4-AS1	34783	chr5:111005116:+	ONLY_REF_SPLICE	YES	21	1	0.16	0.8	0.0116	0.0347	HIPK2->Oncogene{Bushman},chr7:139246316-139477577:-,homeodomain_interacting_protein_kinase_2,STARD4-AS1->STARD4_antisense_RNA_1,chr5:110847924-111075423:+	HOS_BONE	0.16	0.8	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	RP11-58A17.4--ANKS1B	1	1	RP11-58A17.4	1659	chr12:58482333:+	ANKS1B	39867	chr12:99225914:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0116	RP11-58A17.4->chr12:58481675-58487145:+,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	HOS_BONE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000613
HUTU80_SMALL_INTESTINE	RP11-206L10.9--LINC00152	115	57	RP11-206L10.9	1323	chr1:714472:+	LINC00152	28292	chr2:87820726:+	ONLY_REF_SPLICE	YES	2	158	0.99	0.52	1.2979	0.6433	RP11-206L10.9->chr1:714150-745440:+,LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152	HUTU80_SMALL_INTESTINE	0.52	0.99	1.9412	TRUE	0	0	0	1	0	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	ANXA1--ALDH1A1	2	0	ANXA1	1168	chr9:75766840:+	ALDH1A1	21839	chr9:75555168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_INVERSION:+:-:[71315],ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	HUTU80_SMALL_INTESTINE	1	1	0.0226	TRUE	0	0	0	4	0	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	PARD3--CUL2	2	0	PARD3	1450	chr10:35103804:-	CUL2	56110	chr10:35305322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,CUL2->chr10:35297479-35379570:-,cullin_2	HUTU80_SMALL_INTESTINE	1	1	0.0226	TRUE	0	1	0	2	1	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	RP11-184D12.1--IGSF9B	2	0	RP11-184D12.1	3199	chr15:36325394:-	IGSF9B	34966	chr11:133781902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RP11-184D12.1->chr15:36231368-36544458:-,IGSF9B->chr11:133778459-133826880:-,immunoglobulin_superfamily_member_9B	HUTU80_SMALL_INTESTINE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	RP5-977B1.7--TGIF2	2	0	RP5-977B1.7	2583	chr20:35199844:-	TGIF2	17191	chr20:35207144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_INVERSION:-:+:[97],RP5-977B1.7->chr20:35136563-35201794:-,TGIF2->TGFB_induced_factor_homeobox_2,chr20:35201891-35222353:+	HUTU80_SMALL_INTESTINE	1	1	0.0226	TRUE	0	3	0	3	3	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	TTI1--SEPT11	2	0	TTI1	1065	chr20:36661806:-	SEPT11	24590	chr4:77926754:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-,SEPT11->chr4:77870856-77961537:+,septin_11	HUTU80_SMALL_INTESTINE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	RAB28--BOD1L1	1	3	RAB28	3476	chr4:13475942:-	BOD1L1	21302	chr4:13621691:-	ONLY_REF_SPLICE	NO	57	1	0.07	0.8	0.0113	0.0339	LOCAL_REARRANGEMENT:-:[84373],RAB28->RAB28,_member_RAS_oncogene_family,chr4:13362978-13485989:-,BOD1L1->biorientation_of_chromosomes_in_cell_division_1_like_1,chr4:13570362-13629347:-	HUTU80_SMALL_INTESTINE	0.07	0.8	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	XKR9--LACTB2	1	1	XKR9	1174	chr8:71581773:+	LACTB2	20001	chr8:71556478:-	ONLY_REF_SPLICE	YES	0	86	1	0.02	0.0113	0.0113	LOCAL_INVERSION:+:-:[191],XKR9->XK_related_9,chr8:71581600-71702606:+,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	HUTU80_SMALL_INTESTINE	0.02	1	0.0226	TRUE	0	11	0	8	7	TRUE	ACH-000538
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	220	115	UPF3A	4015	chr13:115052104:+	CDC16	26255	chr13:115027362:+	ONLY_REF_SPLICE	YES	93	224	0.78	0.6	3.1092	1.6253	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.78	4.7345	TRUE	0	2	0	3	2	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	84	54	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.1872	0.7632	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.9504	TRUE	0	2	1	16	2	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	73	94	UPF3A	4015	chr13:115052104:+	CDC16	27247	chr13:115028354:+	ONLY_REF_SPLICE	YES	93	225	0.64	0.43	1.0317	1.3285	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.64	2.3602	TRUE	0	2	0	3	2	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	83	43	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	1.173	0.6077	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.7807	TRUE	0	2	0	9	2	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	2	53	BCR	21553	chr22:23632600:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.0283	0.749	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.7773	TRUE	0	2	1	16	2	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	8	19	ABL1	1510	chr9:133589842:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	0	5	1	0.84	0.1131	0.2685	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	0.3816	TRUE	0	0	0	6	0	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	7	11	ABL1	1510	chr9:133589842:+	BCR	48463	chr22:23651611:+	ONLY_REF_SPLICE	YES	0	30	1	0.38	0.0989	0.1555	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.2544	TRUE	0	1	0	5	1	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	6	12	UPF3A	4015	chr13:115052104:+	CDC16	30506	chr13:115037753:+	INCL_NON_REF_SPLICE	YES	93	235	0.16	0.07	0.0848	0.1696	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.16	0.2544	TRUE	0	0	0	1	0	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	3	12	UPF3A	4015	chr13:115052104:+	CDC16	30503	chr13:115037750:+	INCL_NON_REF_SPLICE	YES	93	245	0.14	0.06	0.0424	0.1696	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.14	0.212	TRUE	0	0	0	1	0	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf105--STYX	2	0	C14orf105	8353	chr14:57942300:-	STYX	18416	chr14:53213144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},C14orf105->chr14:57936019-57960585:-,chromosome_14_open_reading_frame_105,STYX->chr14:53196898-53241716:+,serine/threonine/tyrosine_interacting_protein	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	2	0	2	2	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCUN1D1--MKI67	2	0	DCUN1D1	4385	chr3:182683467:-	MKI67	22422	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	DCUN1D1->chr3:182655862-182703741:-,defective_in_cullin_neddylation_1_domain_containing_1,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	2	0	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRRT--POLR3H	2	0	SRRT	1601	chr7:100473333:+	POLR3H	15650	chr22:41936799:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	SRRT->chr7:100472733-100486285:+,serrate,_RNA_effector_molecule,POLR3H->chr22:41921808-41940610:-,polymerase_(RNA)_III_subunit_H	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000074
HEC50B_ENDOMETRIUM	PPP2R4--IFIH1	159	59	PPP2R4	4593	chr9:131882889:+	IFIH1	24893	chr2:163167443:-	ONLY_REF_SPLICE	YES	277	2	0.44	0.99	1.6319	0.6055	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	HEC50B_ENDOMETRIUM	0.44	0.99	2.2374	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	ARID1B--RPS20	55	40	ARID1B	8327	chr6:157256710:+	RPS20	40672	chr8:56986718:-	ONLY_REF_SPLICE	YES	27	2338	0.78	0.04	0.5645	0.4105	ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,RPS20->chr8:56979854-56987069:-,ribosomal_protein_S20	HEC50B_ENDOMETRIUM	0.04	0.78	0.975	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	IPO8--ASPSCR1	52	46	IPO8	3091	chr12:30843430:-	ASPSCR1	49561	chr17:79966913:+	ONLY_REF_SPLICE	YES	100	83	0.49	0.54	0.5337	0.4721	IPO8->chr12:30781922-30848920:-,importin_8,ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+	HEC50B_ENDOMETRIUM	0.49	0.54	1.0058	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	IPO8--ASPSCR1	41	41	IPO8	1423	chr12:30848498:-	ASPSCR1	49561	chr17:79966913:+	ONLY_REF_SPLICE	YES	102	83	0.45	0.5	0.4208	0.4208	IPO8->chr12:30781922-30848920:-,importin_8,ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+	HEC50B_ENDOMETRIUM	0.45	0.5	0.8416	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	CAPN15--RAB11FIP3	50	4	CAPN15	2366	chr16:583998:+	RAB11FIP3	21750	chr16:521295:+	ONLY_REF_SPLICE	YES	32	73	0.63	0.43	0.5132	0.0411	LOCAL_REARRANGEMENT:+:[4706],CAPN15->calpain_15,chr16:577717-604636:+,RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+	HEC50B_ENDOMETRIUM	0.43	0.63	0.5543	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	SYNJ2--TMEM181	33	29	SYNJ2	9655	chr6:158480385:+	TMEM181	45868	chr6:159026299:+	ONLY_REF_SPLICE	YES	37	50	0.63	0.55	0.3387	0.2976	SYNJ2->chr6:158402888-158520208:+,synaptojanin_2,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	HEC50B_ENDOMETRIUM	0.55	0.63	0.6363	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	SYNJ2--TMEM181	25	26	SYNJ2	8558	chr6:158476060:+	TMEM181	45868	chr6:159026299:+	ONLY_REF_SPLICE	YES	46	50	0.53	0.5	0.2566	0.2668	SYNJ2->chr6:158402888-158520208:+,synaptojanin_2,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	HEC50B_ENDOMETRIUM	0.5	0.53	0.5234	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	ANKHD1--RICTOR	18	9	ANKHD1	1460	chr5:139781858:+	RICTOR	50874	chr5:38982138:-	ONLY_REF_SPLICE	YES	51	6	0.35	0.82	0.1847	0.0924	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-	HEC50B_ENDOMETRIUM	0.35	0.82	0.2771	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	IPO8--ASPSCR1	8	35	IPO8	1423	chr12:30848498:-	ASPSCR1	49576	chr17:79966928:+	INCL_NON_REF_SPLICE	NO	102	80	0.3	0.35	0.0821	0.3592	IPO8->chr12:30781922-30848920:-,importin_8,ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+	HEC50B_ENDOMETRIUM	0.3	0.35	0.4413	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	PPP2R4--IFIH1	2	59	PPP2R4	4611	chr9:131882907:+	IFIH1	24893	chr2:163167443:-	ONLY_REF_SPLICE	YES	286	2	0.18	0.97	0.0205	0.6055	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	HEC50B_ENDOMETRIUM	0.18	0.97	0.626	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	SYNRG--AC091199.1	11	8	SYNRG	6868	chr17:35944756:-	AC091199.1	39327	chr17:36162301:-	INCL_NON_REF_SPLICE	YES	41	0	0.32	1	0.1129	0.0821	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,AC091199.1->chr17:36158869-36162759:-	HEC50B_ENDOMETRIUM	0.32	1	0.195	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	CAPN15--RAB11FIP3	12	0	CAPN15	1313	chr16:578029:+	RAB11FIP3	21750	chr16:521295:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1232	0	LOCAL_REARRANGEMENT:+:[4706],CAPN15->calpain_15,chr16:577717-604636:+,RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+	HEC50B_ENDOMETRIUM	1	1	0.1232	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	PPP2R4--IFIH1	5	22	PPP2R4	1682	chr9:131873910:+	IFIH1	24893	chr2:163167443:-	ONLY_REF_SPLICE	YES	155	2	0.15	0.93	0.0513	0.2258	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	HEC50B_ENDOMETRIUM	0.15	0.93	0.2771	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	LSM12--RP11-546M21.6	8	0	LSM12	3290	chr17:42141169:-	RP11-546M21.6	12469	chr17:42197351:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0821	0	LOCAL_INVERSION:-:+:[48293],LSM12->LSM12_homolog,chr17:42112003-42144987:-,RP11-546M21.6->chr17:42193280-42197963:+	HEC50B_ENDOMETRIUM	1	1	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	PPP2R4--IFIH1	1	22	PPP2R4	1842	chr9:131874070:+	IFIH1	24893	chr2:163167443:-	ONLY_REF_SPLICE	NO	179	2	0.11	0.92	0.0103	0.2258	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	HEC50B_ENDOMETRIUM	0.11	0.92	0.2361	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	C11orf68--DRAP1	6	0	C11orf68	1087	chr11:65686502:-	DRAP1	6880	chr11:65687297:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	HEC50B_ENDOMETRIUM	1	1	0.0616	TRUE	0	1	0	6	1	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	SYNRG--AC091199.1	3	8	SYNRG	6868	chr17:35944756:-	AC091199.1	39330	chr17:36162298:-	ONLY_REF_SPLICE	YES	41	0	0.21	1	0.0308	0.0821	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,AC091199.1->chr17:36158869-36162759:-	HEC50B_ENDOMETRIUM	0.21	1	0.1129	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	IPO8--ASPSCR1	1	13	IPO8	1423	chr12:30848498:-	ASPSCR1	50010	chr17:79967362:+	ONLY_REF_SPLICE	YES	102	77	0.12	0.15	0.0103	0.1334	IPO8->chr12:30781922-30848920:-,importin_8,ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+	HEC50B_ENDOMETRIUM	0.12	0.15	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	C11orf68--DRAP1	4	0	C11orf68	1078	chr11:65686511:-	DRAP1	6544	chr11:65686961:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	HEC50B_ENDOMETRIUM	1	1	0.0411	TRUE	0	1	0	6	1	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	PLXNB1--PFKFB4	4	0	PLXNB1	1178	chr3:48471417:-	PFKFB4	31220	chr3:48587667:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0411	0	LOCAL_REARRANGEMENT:-:[83523],PLXNB1->Oncogene{Bushman},chr3:48445261-48471594:-,plexin_B1,PFKFB4->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_4,chr3:48555117-48599448:-	HEC50B_ENDOMETRIUM	1	1	0.0411	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	ANKHD1--RICTOR	3	3	ANKHD1	1460	chr5:139781858:+	RICTOR	53031	chr5:38978752:-	ONLY_REF_SPLICE	YES	51	16	0.11	0.27	0.0308	0.0308	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-	HEC50B_ENDOMETRIUM	0.11	0.27	0.0616	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	RP11-419K12.1--GSDMC	3	3	RP11-419K12.1	3497	chr8:130692174:-	GSDMC	11577	chr8:130778039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0.0308	LOCAL_REARRANGEMENT:-:[64517],RP11-419K12.1->chr8:130691381-130695925:-,GSDMC->chr8:130760442-130799134:-,gasdermin_C	HEC50B_ENDOMETRIUM	1	1	0.0616	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	FAM228B--MFSD2B	3	0	FAM228B	16165	chr2:24369956:+	MFSD2B	26379	chr2:24236155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	LOCAL_REARRANGEMENT:+:[13205],FAM228B->chr2:24299396-24392509:+,family_with_sequence_similarity_228_member_B,MFSD2B->chr2:24232951-24286191:+,major_facilitator_superfamily_domain_containing_2B	HEC50B_ENDOMETRIUM	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	SYNJ2--TMEM181	1	8	SYNJ2	7496	chr6:158464431:+	TMEM181	46949	chr6:159028276:+	ONLY_REF_SPLICE	YES	45	54	0.17	0.14	0.0103	0.0821	SYNJ2->chr6:158402888-158520208:+,synaptojanin_2,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	HEC50B_ENDOMETRIUM	0.14	0.17	0.0924	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	PLXNB1--PFKFB4	2	2	PLXNB1	1933	chr3:48470662:-	PFKFB4	31220	chr3:48587667:-	ONLY_REF_SPLICE	YES	3	31	0.57	0.11	0.0205	0.0205	LOCAL_REARRANGEMENT:-:[83523],PLXNB1->Oncogene{Bushman},chr3:48445261-48471594:-,plexin_B1,PFKFB4->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_4,chr3:48555117-48599448:-	HEC50B_ENDOMETRIUM	0.11	0.57	0.041	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	ANKHD1--RICTOR	2	1	ANKHD1	1460	chr5:139781858:+	RICTOR	55169	chr5:38972061:-	ONLY_REF_SPLICE	YES	51	14	0.06	0.18	0.0205	0.0103	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-	HEC50B_ENDOMETRIUM	0.06	0.18	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	AC002116.7--EIF4A1	2	0	AC002116.7	3379	chr19:36510286:+	EIF4A1	10057	chr17:7478437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	AC002116.7->chr19:36505410-36536874:+,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	HEC50B_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	ANXA2--NARG2	2	0	ANXA2	11842	chr15:60678227:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	HEC50B_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	2	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	CBFB--MYLPF	2	0	CBFB	1698	chr16:67063716:+	MYLPF	16324	chr16:30386143:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	HEC50B_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	2	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	HM13--PRMT8	2	0	HM13	1307	chr20:30102537:+	PRMT8	26206	chr12:3649772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13,PRMT8->chr12:3490515-3703139:+,protein_arginine_methyltransferase_8	HEC50B_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	POLR3K--SEC24C	2	0	POLR3K	1153	chr16:103476:-	SEC24C	20486	chr10:75528568:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,SEC24C->SEC24_homolog_C,_COPII_coat_complex_component,chr10:75504120-75531919:+	HEC50B_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	ANKHD1--RICTOR	1	2	ANKHD1	1460	chr5:139781858:+	RICTOR	54099	chr5:38975706:-	ONLY_REF_SPLICE	YES	51	18	0.06	0.14	0.0103	0.0205	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-	HEC50B_ENDOMETRIUM	0.06	0.14	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	PLXNB1--PFKFB4	1	2	PLXNB1	2986	chr3:48466690:-	PFKFB4	31220	chr3:48587667:-	ONLY_REF_SPLICE	NO	2	31	0.6	0.09	0.0103	0.0205	LOCAL_REARRANGEMENT:-:[83523],PLXNB1->Oncogene{Bushman},chr3:48445261-48471594:-,plexin_B1,PFKFB4->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_4,chr3:48555117-48599448:-	HEC50B_ENDOMETRIUM	0.09	0.6	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	CSNK1E--PHF20	1	1	CSNK1E	3868	chr22:38757404:-	PHF20	27593	chr20:34389413:+	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0103	0.0103	CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	HEC50B_ENDOMETRIUM	0.5	0.67	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	OSBPL11--PHF20	1	1	OSBPL11	1454	chr3:125313481:-	PHF20	23485	chr20:34389413:+	ONLY_REF_SPLICE	YES	23	2	0.08	0.5	0.0103	0.0103	OSBPL11->chr3:125247702-125313934:-,oxysterol_binding_protein_like_11,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	HEC50B_ENDOMETRIUM	0.08	0.5	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000831
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--PRDM7	64	39	RUNX1	21108	chr21:36421139:-	PRDM7	54621	chr16:90127927:-	ONLY_REF_SPLICE	YES	66	19	0.61	0.84	0.8469	0.5161	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,PRDM7->PR_domain_7,chr16:90122974-90158480:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.84	1.363	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ETV6--RUNX1	48	17	ETV6	11057	chr12:12022903:+	RUNX1	42872	chr21:36265260:-	ONLY_REF_SPLICE	YES	0	65	1	0.5	0.6352	0.225	Mitelman{ALL=2},chimerdb_omim:{acutelymphoblasticleukemia},chimerdb_omim:{pediatricAcuteLymphocyticLeukemia},chimerdb_pubmed{Bcell lineage ALL, CML,Blineage acute lymphoblastic leukaemias (ALL),early Blineage leukemia,CML, ALL,childhood acute lymphoblastic leukemia,childhood acute lymphoblastic leukaemia (ALL), acute myeloid leukaemia (AML),severalleukaemia,acute lymphoblastic leukaemia ,leukemia,childhood acute lymphoblastic leukaemia(ALL),pediatric Bcell precursor acute lymphoblastic leukemia,Leukemia,childhood Blineage acute lymphoblastic leukemia (BALL),acute lymphoblastic leukemia (ALL),paediatric acute lymphoblastic leukaemia (ALL),Bcell precursor acute lymphoblastic leukaemia in children, good prognosis,acute myeloid leukemia (AML),childhood Bcell acute lymphoblastic leukemia(ALL),B cell acute lymphoblastic leukemia (ALL),Bprecursor acute lymphoblastic leukaemia(Bprecursor ALL),Bprecursor acute lymphoblastic leukaemia,childhood acute lymphoblastic leukemia (ALL),human leukemia,Acute lymphoblastic leukemia,acute leukemia, acute lymphoblastic leukemia,acute lymphoblastic leukaemia (ALL),acute lymphoblastic leukemia(ALL),preBcell acute lymphoblastic leukemia(PBCALL),childhood precursorB cell acute lymphoblastic leukemia,Acute lymphoblastic leukaemia(ALL),acute lymphoblastic leukemia,childhood Blineage acute lymphoblastic leukemia,childhood acute lymphoblastic leukaemia,TEL/AML2positive leukemia, acute lymphoblastic leukemia (ALL),acute lymphoblastic leukemias in children,Acute leukemia,Blineage childhood acute lymphoblastic leukemia,childhood Bprecursor acute lymphoblastic leukemia (ALL),acute lymphoblastic leukaemia,Bcell precursor acute lymphoblastic leukemia,acute lymphocytic leukemia (ALL),childhood Bcell precursor (BCP) acute lymphoblastic leukemia (ALL)},ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.8602	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--PRDM7	32	49	RUNX1	21108	chr21:36421139:-	PRDM7	51431	chr16:90133318:-	ONLY_REF_SPLICE	YES	66	0	0.55	1	0.4234	0.6484	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,PRDM7->PR_domain_7,chr16:90122974-90158480:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	1.0718	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--PRDM7	22	46	RUNX1	21108	chr21:36421139:-	PRDM7	53948	chr16:90128600:-	ONLY_REF_SPLICE	YES	66	7	0.51	0.91	0.2911	0.6087	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,PRDM7->PR_domain_7,chr16:90122974-90158480:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.91	0.8998	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--PRDM7	5	47	RUNX1	21108	chr21:36421139:-	PRDM7	53638	chr16:90128910:-	ONLY_REF_SPLICE	YES	66	0	0.44	1	0.0662	0.6219	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,PRDM7->PR_domain_7,chr16:90122974-90158480:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.6881	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ETV6--RUNX1	6	10	ETV6	11057	chr12:12022903:+	RUNX1	46605	chr21:36259393:-	ONLY_REF_SPLICE	YES	0	128	1	0.11	0.0794	0.1323	Mitelman{ALL=2},chimerdb_omim:{acutelymphoblasticleukemia},chimerdb_omim:{pediatricAcuteLymphocyticLeukemia},chimerdb_pubmed{Bcell lineage ALL, CML,Blineage acute lymphoblastic leukaemias (ALL),early Blineage leukemia,CML, ALL,childhood acute lymphoblastic leukemia,childhood acute lymphoblastic leukaemia (ALL), acute myeloid leukaemia (AML),severalleukaemia,acute lymphoblastic leukaemia ,leukemia,childhood acute lymphoblastic leukaemia(ALL),pediatric Bcell precursor acute lymphoblastic leukemia,Leukemia,childhood Blineage acute lymphoblastic leukemia (BALL),acute lymphoblastic leukemia (ALL),paediatric acute lymphoblastic leukaemia (ALL),Bcell precursor acute lymphoblastic leukaemia in children, good prognosis,acute myeloid leukemia (AML),childhood Bcell acute lymphoblastic leukemia(ALL),B cell acute lymphoblastic leukemia (ALL),Bprecursor acute lymphoblastic leukaemia(Bprecursor ALL),Bprecursor acute lymphoblastic leukaemia,childhood acute lymphoblastic leukemia (ALL),human leukemia,Acute lymphoblastic leukemia,acute leukemia, acute lymphoblastic leukemia,acute lymphoblastic leukaemia (ALL),acute lymphoblastic leukemia(ALL),preBcell acute lymphoblastic leukemia(PBCALL),childhood precursorB cell acute lymphoblastic leukemia,Acute lymphoblastic leukaemia(ALL),acute lymphoblastic leukemia,childhood Blineage acute lymphoblastic leukemia,childhood acute lymphoblastic leukaemia,TEL/AML2positive leukemia, acute lymphoblastic leukemia (ALL),acute lymphoblastic leukemias in children,Acute leukemia,Blineage childhood acute lymphoblastic leukemia,childhood Bprecursor acute lymphoblastic leukemia (ALL),acute lymphoblastic leukaemia,Bcell precursor acute lymphoblastic leukemia,acute lymphocytic leukemia (ALL),childhood Bcell precursor (BCP) acute lymphoblastic leukemia (ALL)},ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.2117	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--PRDM7	1	22	RUNX1	21108	chr21:36421139:-	PRDM7	56800	chr16:90124942:-	ONLY_REF_SPLICE	YES	66	24	0.26	0.49	0.0132	0.2911	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,PRDM7->PR_domain_7,chr16:90122974-90158480:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.49	0.3043	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SETD8--CDK2AP1	4	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0529	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0529	TRUE	0	0	0	18	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--DERA	3	0	FAM60A	2035	chr12:31478958:-	DERA	23155	chr12:16109870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TBCA	3	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	TRUE	0	3	0	7	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--GNB1	2	0	DANCR	1530	chr4:53579126:+	GNB1	9431	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	8	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF126--BSG	2	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	2	0	12	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--URAHP	1	2	RUNX1	21108	chr21:36421139:-	URAHP	45344	chr16:90113504:-	ONLY_REF_SPLICE	NO	66	0	0.04	1	0.0132	0.0265	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,URAHP->chr16:90106169-90114181:-,urate_(hydroxyiso-)_hydrolase,_pseudogene	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0397	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP1--MGAM	1	1	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0132	0.0132	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0264	TRUE	0	1	0	7	1	TRUE	ACH-000960
COLO792_SKIN	C5orf45--PSAP	75	0	C5orf45	15316	chr5:179263770:-	PSAP	32390	chr10:73576781:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6557	0	C5orf45->chr5:179261436-179289173:-,chromosome_5_open_reading_frame_45,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin	COLO792_SKIN	1	1	0.6557	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	IL17RC--TTLL3	19	10	IL17RC	2536	chr3:9960293:+	TTLL3	23348	chr3:9862230:+	ONLY_REF_SPLICE	YES	169	8	0.15	0.78	0.1661	0.0874	LOCAL_REARRANGEMENT:+:[61936],IL17RC->chr3:9958758-9975314:+,interleukin_17_receptor_C,TTLL3->Oncogene{Bushman},chr3:9849770-9896822:+,tubulin_tyrosine_ligase_like_3	COLO792_SKIN	0.15	0.78	0.2535	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	CTSD--PSAP	21	0	CTSD	7580	chr11:1776199:-	PSAP	24714	chr10:73576604:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1836	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.05%,CTSD->cathepsin_D,chr11:1773982-1785222:-,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin	COLO792_SKIN	1	1	0.1836	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	UNK--ITGB4	8	0	UNK	1385	chr17:73781065:+	ITGB4	26812	chr17:73725346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0699	0	LOCAL_REARRANGEMENT:+:[26782],UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	COLO792_SKIN	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	RIC8B--RFX4	6	6	RIC8B	8866	chr12:107219598:+	RFX4	37585	chr12:107075771:+	ONLY_REF_SPLICE	YES	20	0	0.38	1	0.0525	0.0525	LOCAL_REARRANGEMENT:+:[11792],RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+,RFX4->chr12:106976685-107156581:+,regulatory_factor_X4	COLO792_SKIN	0.38	1	0.105	TRUE	0	1	0	1	1	TRUE	ACH-000968
COLO792_SKIN	FRMD6--SLC5A10	6	2	FRMD6	18545	chr14:52174951:+	SLC5A10	44701	chr17:18916723:+	ONLY_REF_SPLICE	YES	33	0	0.2	1	0.0525	0.0175	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,SLC5A10->chr17:18853658-18925908:+,solute_carrier_family_5_member_10	COLO792_SKIN	0.2	1	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	CTD-2547E10.2--IGSF6	5	3	CTD-2547E10.2	1617	chr16:21531149:-	IGSF6	33704	chr16:21658813:-	ONLY_REF_SPLICE	YES	29	0	0.22	1	0.0437	0.0262	CTD-2547E10.2->chr16:21458004-21531765:-,IGSF6->chr16:21652609-21663981:-,immunoglobulin_superfamily_member_6	COLO792_SKIN	0.22	1	0.0699	TRUE	0	1	0	1	1	TRUE	ACH-000968
COLO792_SKIN	IL17RC--TTLL3	3	10	IL17RC	2525	chr3:9960282:+	TTLL3	23348	chr3:9862230:+	ONLY_REF_SPLICE	YES	150	8	0.08	0.62	0.0262	0.0874	LOCAL_REARRANGEMENT:+:[61936],IL17RC->chr3:9958758-9975314:+,interleukin_17_receptor_C,TTLL3->Oncogene{Bushman},chr3:9849770-9896822:+,tubulin_tyrosine_ligase_like_3	COLO792_SKIN	0.08	0.62	0.1136	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	MFSD12--TUBA1B	5	0	MFSD12	5904	chr19:3557280:-	TUBA1B	21966	chr12:49522647:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0	MFSD12->chr19:3538259-3574288:-,major_facilitator_superfamily_domain_containing_12,TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b	COLO792_SKIN	1	1	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	PDSS2--ANXA13	4	2	PDSS2	2710	chr6:107655402:-	ANXA13	27808	chr8:124705538:-	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.035	0.0175	PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2,ANXA13->annexin_A13,chr8:124693034-124749647:-	COLO792_SKIN	0.43	1	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	VIM--FTH1	4	0	VIM	2124	chr10:17271381:+	FTH1	12402	chr11:61734935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	COLO792_SKIN	1	1	0.035	TRUE	0	0	0	6	0	TRUE	ACH-000968
COLO792_SKIN	KMT2E--LHFPL3	3	3	KMT2E	2431	chr7:104678646:+	LHFPL3	39671	chr7:104546634:+	ONLY_REF_SPLICE	YES	23	0	0.21	1	0.0262	0.0262	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LHFPL3->chr7:103969104-104549001:+,lipoma_HMGIC_fusion_partner-like_3	COLO792_SKIN	0.21	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	FRMD6--SLC5A10	3	2	FRMD6	18545	chr14:52174951:+	SLC5A10	44653	chr17:18916675:+	ONLY_REF_SPLICE	YES	33	0	0.13	1	0.0262	0.0175	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,SLC5A10->chr17:18853658-18925908:+,solute_carrier_family_5_member_10	COLO792_SKIN	0.13	1	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	KMT2E--LHFPL3	3	2	KMT2E	1357	chr7:104654982:+	LHFPL3	39671	chr7:104546634:+	ONLY_REF_SPLICE	YES	17	0	0.23	1	0.0262	0.0175	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LHFPL3->chr7:103969104-104549001:+,lipoma_HMGIC_fusion_partner-like_3	COLO792_SKIN	0.23	1	0.0437	TRUE	0	3	0	1	3	TRUE	ACH-000968
COLO792_SKIN	ANXA13--PDSS2	2	2	ANXA13	14172	chr8:124696850:-	PDSS2	21449	chr6:107595431:-	ONLY_REF_SPLICE	YES	2	6	0.67	0.4	0.0175	0.0175	ANXA13->annexin_A13,chr8:124693034-124749647:-,PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2	COLO792_SKIN	0.4	0.67	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	LAPTM5--SDC3	2	0	LAPTM5	1162	chr1:31230506:-	SDC3	18023	chr1:31351587:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	LAPTM5->Oncogene{Bushman},chr1:31205316-31230667:-,lysosomal_protein_transmembrane_5,SDC3->Oncogene{Bushman},chr1:31342314-31381608:-,syndecan_3	COLO792_SKIN	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	PSMG4--PXDC1	2	0	PSMG4	6934	chr6:3259430:+	PXDC1	26183	chr6:3738382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	PSMG4->chr6:3231637-3303607:+,proteasome_assembly_chaperone_4,PXDC1->PX_domain_containing_1,chr6:3722848-3752260:-	COLO792_SKIN	1	1	0.0175	TRUE	0	1	0	1	0	TRUE	ACH-000968
COLO792_SKIN	STXBP1--PCOLCE	2	0	STXBP1	1176	chr9:130374719:+	PCOLCE	30457	chr7:100201053:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	STXBP1->chr9:130374544-130457460:+,syntaxin_binding_protein_1,PCOLCE->chr7:100199800-100205798:+,procollagen_C-endopeptidase_enhancer	COLO792_SKIN	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	KMT2E--LHFPL3	1	3	KMT2E	2757	chr7:104678972:+	LHFPL3	39671	chr7:104546634:+	ONLY_REF_SPLICE	YES	24	0	0.14	1	0.0087	0.0262	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LHFPL3->chr7:103969104-104549001:+,lipoma_HMGIC_fusion_partner-like_3	COLO792_SKIN	0.14	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	RIC8B--RFX4	1	2	RIC8B	5581	chr12:107209082:+	RFX4	37585	chr12:107075771:+	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0087	0.0175	LOCAL_REARRANGEMENT:+:[11792],RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+,RFX4->chr12:106976685-107156581:+,regulatory_factor_X4	COLO792_SKIN	0.14	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000968
BHT101_THYROID	COL14A1--RNU4-25P	273	46	COL14A1	18972	chr8:121224792:+	RNU4-25P	61026	chr8:129022690:-	INCL_NON_REF_SPLICE	YES	51	0	0.86	1	2.1812	0.3675	COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1,RNU4-25P->RNA,_U4_small_nuclear_25,_pseudogene,chr8:129022628-129022857:-	BHT101_THYROID	0.86	1	2.5487	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	PCMTD1--KB-1047C11.2	54	32	PCMTD1	1246	chr8:52811490:-	KB-1047C11.2	24291	chr8:96444854:+	ONLY_REF_SPLICE	YES	302	0	0.22	1	0.4314	0.2557	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,KB-1047C11.2->chr8:96216684-96822364:+	BHT101_THYROID	0.22	1	0.6871	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	GTF2IRD1--DTX2P1	36	6	GTF2IRD1	14981	chr7:73950605:+	DTX2P1	40241	chr7:76631480:+	ONLY_REF_SPLICE	YES	22	1	0.66	0.98	0.2876	0.0479	GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	BHT101_THYROID	0.66	0.98	0.3355	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	UBR5--ENPP2	35	3	UBR5	36021	chr8:103291054:-	ENPP2	58641	chr8:120650767:-	ONLY_REF_SPLICE	YES	52	0	0.42	1	0.2796	0.024	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,ENPP2->Oncogene{Bushman},chr8:120569326-120685693:-,ectonucleotide_pyrophosphatase/phosphodiesterase_2	BHT101_THYROID	0.42	1	0.3036	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	SPIDR--PQLC2	30	8	SPIDR	16312	chr8:48353104:+	PQLC2	42678	chr1:19651127:+	ONLY_REF_SPLICE	YES	262	38	0.13	0.5	0.2397	0.0639	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,PQLC2->PQ_loop_repeat_containing_2,chr1:19638820-19655794:+	BHT101_THYROID	0.13	0.5	0.3036	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	FAM160B2--XPO7	25	18	FAM160B2	1140	chr8:21946809:+	XPO7	20285	chr8:21824368:+	ONLY_REF_SPLICE	YES	23	3	0.65	0.93	0.1997	0.1438	LOCAL_REARRANGEMENT:+:[82574],FAM160B2->chr8:21946670-21962409:+,family_with_sequence_similarity_160_member_B2,XPO7->chr8:21777180-21864096:+,exportin_7	BHT101_THYROID	0.65	0.93	0.3435	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	COL14A1--RNU4-25P	24	11	COL14A1	14405	chr8:121216076:+	RNU4-25P	61026	chr8:129022690:-	INCL_NON_REF_SPLICE	YES	114	0	0.23	1	0.1918	0.0879	COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1,RNU4-25P->RNA,_U4_small_nuclear_25,_pseudogene,chr8:129022628-129022857:-	BHT101_THYROID	0.23	1	0.2797	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	PCMTD1--KB-1047C11.2	21	11	PCMTD1	1246	chr8:52811490:-	KB-1047C11.2	25446	chr8:96622892:+	ONLY_REF_SPLICE	YES	302	4	0.1	0.89	0.1678	0.0879	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,KB-1047C11.2->chr8:96216684-96822364:+	BHT101_THYROID	0.1	0.89	0.2557	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	ENPP2--RP11-556I14.2	18	1	ENPP2	2617	chr8:120650665:-	RP11-556I14.2	41137	chr4:105575078:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1438	0.008	ENPP2->Oncogene{Bushman},chr8:120569326-120685693:-,ectonucleotide_pyrophosphatase/phosphodiesterase_2,RP11-556I14.2->chr4:105575031-105887950:-	BHT101_THYROID	0.95	1	0.1518	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	TRPS1--KCNQ3	14	3	TRPS1	13825	chr8:116599228:-	KCNQ3	30535	chr8:133198428:-	ONLY_REF_SPLICE	YES	10	0	0.63	1	0.1119	0.024	TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,KCNQ3->chr8:133133108-133493200:-,potassium_voltage-gated_channel_subfamily_Q_member_3	BHT101_THYROID	0.63	1	0.1359	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	CDC42SE2--CTC-349C3.2	13	3	CDC42SE2	5200	chr5:130599859:+	CTC-349C3.2	20500	chr5:134583502:-	ONLY_REF_SPLICE	YES	17	0	0.48	1	0.1039	0.024	CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,CTC-349C3.2->chr5:134571924-134583869:-	BHT101_THYROID	0.48	1	0.1279	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	SPIDR--MRPL13	12	3	SPIDR	16312	chr8:48353104:+	MRPL13	50668	chr8:121393413:-	ONLY_REF_SPLICE	YES	262	0	0.05	1	0.0959	0.024	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	BHT101_THYROID	0.05	1	0.1199	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	ATF7--FAM120B	12	2	ATF7	1137	chr12:54020063:-	FAM120B	34169	chr6:170667314:+	ONLY_REF_SPLICE	YES	3	28	0.82	0.33	0.0959	0.016	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	BHT101_THYROID	0.33	0.82	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	RNF139-AS1--DEPTOR	12	2	RNF139-AS1	1492	chr8:125486326:-	DEPTOR	17731	chr8:121013764:+	ONLY_REF_SPLICE	YES	54	0	0.21	1	0.0959	0.016	RNF139-AS1->RNF139_antisense_RNA_1_(head_to_head),chr8:125474726-125486817:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	BHT101_THYROID	0.21	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	IPO11--NPSR1-AS1	9	1	IPO11	32813	chr5:61857084:+	NPSR1-AS1	50378	chr7:34768428:-	ONLY_REF_SPLICE	YES	14	0	0.42	1	0.0719	0.008	IPO11->chr5:61699799-61924409:+,importin_11,NPSR1-AS1->NPSR1_antisense_RNA_1,chr7:34386124-34911194:-	BHT101_THYROID	0.42	1	0.0799	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	FAM160B2--XPO7	4	18	FAM160B2	1140	chr8:21946809:+	XPO7	18489	chr8:21821660:+	ONLY_REF_SPLICE	YES	23	4	0.49	0.85	0.032	0.1438	LOCAL_REARRANGEMENT:+:[82574],FAM160B2->chr8:21946670-21962409:+,family_with_sequence_similarity_160_member_B2,XPO7->chr8:21777180-21864096:+,exportin_7	BHT101_THYROID	0.49	0.85	0.1758	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	ENPP2--RP11-556I14.2	7	1	ENPP2	2617	chr8:120650665:-	RP11-556I14.2	40017	chr4:105588173:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0559	0.008	ENPP2->Oncogene{Bushman},chr8:120569326-120685693:-,ectonucleotide_pyrophosphatase/phosphodiesterase_2,RP11-556I14.2->chr4:105575031-105887950:-	BHT101_THYROID	0.89	1	0.0639	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	AP003900.6--AC091969.1	7	0	AP003900.6	1122	chr21:11169841:+	AC091969.1	19017	chr5:152064345:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0559	0	AP003900.6->chr21:11169720-11184046:+,AC091969.1->chr5:151998525-152603103:-	BHT101_THYROID	1	1	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	ATF7--FAM120B	6	2	ATF7	1465	chr12:54019735:-	FAM120B	34169	chr6:170667314:+	ONLY_REF_SPLICE	YES	14	28	0.36	0.22	0.0479	0.016	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	BHT101_THYROID	0.22	0.36	0.0639	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	IPO11--NPSR1-AS1	6	2	IPO11	32813	chr5:61857084:+	NPSR1-AS1	48099	chr7:34800803:-	ONLY_REF_SPLICE	YES	14	0	0.36	1	0.0479	0.016	IPO11->chr5:61699799-61924409:+,importin_11,NPSR1-AS1->NPSR1_antisense_RNA_1,chr7:34386124-34911194:-	BHT101_THYROID	0.36	1	0.0639	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	IFI35--AARSD1	4	2	IFI35	2461	chr17:41164294:+	AARSD1	7902	chr17:41116254:-	ONLY_REF_SPLICE	YES	79	0	0.07	1	0.032	0.016	LOCAL_INVERSION:+:-:[42227],IFI35->chr17:41158742-41166473:+,interferon_induced_protein_35,AARSD1->alanyl-tRNA_synthetase_domain_containing_1,chr17:41102543-41116515:-	BHT101_THYROID	0.07	1	0.048	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	BHT101_THYROID	1	1	0.024	TRUE	0	5	0	18	5	TRUE	ACH-000191
BHT101_THYROID	RP11-307P5.1--SASH1	2	4	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	22	1	0.21	0.86	0.016	0.032	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	BHT101_THYROID	0.21	0.86	0.048	TRUE	0	0	0	16	0	TRUE	ACH-000191
BHT101_THYROID	RP11-307P5.1--SASH1	1	6	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	NO	81	1	0.08	0.88	0.008	0.0479	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	BHT101_THYROID	0.08	0.88	0.0559	TRUE	0	0	0	11	0	TRUE	ACH-000191
BHT101_THYROID	ATF7--FAM120B	2	1	ATF7	1137	chr12:54020063:-	FAM120B	35262	chr6:170697375:+	ONLY_REF_SPLICE	YES	3	27	0.5	0.1	0.016	0.008	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	BHT101_THYROID	0.1	0.5	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	MTAP--DMRTA1	2	0	MTAP	8659	chr9:21838009:+	DMRTA1	25056	chr9:22451063:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	BHT101_THYROID	1	1	0.016	TRUE	0	1	0	1	1	TRUE	ACH-000191
BHT101_THYROID	AC104389.28--HBE1	1	2	AC104389.28	2337	chr11:5368106:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	NO	23	0	0.12	1	0.008	0.016	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BHT101_THYROID	0.12	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000191
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFF1--KMT2A	2	1	AFF1	8490	chr4:87968746:+	KMT2A	52489	chr11:118355577:+	ONLY_REF_SPLICE	YES	7	2	0.3	0.6	0.0258	0.0129	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.6	0.0387	TRUE	0	0	0	2	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACN9--SHFM1	2	0	ACN9	2308	chr7:96747209:+	SHFM1	15230	chr7:96324203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ACN9->chr7:96745902-96811075:+,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	3	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASB1--NDUFA10	2	0	ASB1	1378	chr2:239335760:+	NDUFA10	25359	chr2:240946787:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ASB1->ankyrin_repeat_and_SOCS_box_containing_1,chr2:239335383-239360891:+,NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-260F20.3--APEX1	2	0	CTC-260F20.3	1106	chr19:19627141:+	APEX1	12451	chr14:20923737:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CTC-260F20.3->chr19:19627036-19646885:+,APEX1->apurinic/apyrimidinic_endodeoxyribonuclease_1,chr14:20923350-20925927:+	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JARID2--DTNBP1	2	0	JARID2	5780	chr6:15410596:+	DTNBP1	34515	chr6:15615630:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=7;pct=0.08%;dist=Lung=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:+:-:[780],JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAD1L1--EIF3B	2	0	MAD1L1	35008	chr7:1937836:-	EIF3B	59817	chr7:2418769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	2	0	3	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAF4--TIAM1	2	0	SCAF4	1413	chr21:33103976:-	TIAM1	27419	chr21:32711737:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF608--LMNB1	2	0	ZNF608	4819	chr5:124079777:-	LMNB1	28458	chr5:126154614:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,LMNB1->chr5:126112315-126172712:+,lamin_B1	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	1	1	KMT2A	17776	chr11:118355029:+	AFF1	62546	chr4:88005275:+	ONLY_REF_SPLICE	YES	2	5	0.5	0.29	0.0129	0.0129	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.5	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	1	1	KMT2A	17776	chr11:118355029:+	AFF1	62543	chr4:88005272:+	ONLY_REF_SPLICE	NO	2	5	0.5	0.29	0.0129	0.0129	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.5	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
JHUEM2_ENDOMETRIUM	USP34--PTMS	3	0	USP34	53013	chr2:61454298:-	PTMS	79535	chr12:6879137:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,PTMS->chr12:6874682-6880116:+,parathymosin	JHUEM2_ENDOMETRIUM	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000909
JHUEM2_ENDOMETRIUM	DECR2--ABCC1	2	0	DECR2	3660	chr16:456397:+	ABCC1	12936	chr16:16101673:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	DECR2->2,4-dienoyl-CoA_reductase_2,_peroxisomal,chr16:451826-462487:+,ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+	JHUEM2_ENDOMETRIUM	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000909
JHUEM2_ENDOMETRIUM	LINC00578--GNAS	2	0	LINC00578	1190	chr3:177159898:+	GNAS	26071	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	JHUEM2_ENDOMETRIUM	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000909
JHUEM2_ENDOMETRIUM	POLE4--ZNF362	2	0	POLE4	2655	chr2:75187273:+	ZNF362	9844	chr1:33736088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,ZNF362->chr1:33722146-33766320:+,zinc_finger_protein_362	JHUEM2_ENDOMETRIUM	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000909
JHUEM2_ENDOMETRIUM	SEC23A--DIABLO	2	0	SEC23A	21302	chr14:39517856:-	DIABLO	37460	chr12:122703322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	GTEx_v2:{count=3;pct=0.03%;dist=Breast_-_Mammary_Tissue=1,Prostate=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SEC23A->Sec23_homolog_A,_coat_complex_II_component,chr14:39501123-39578850:-,DIABLO->chr12:122692210-122712081:-,diablo_IAP-binding_mitochondrial_protein	JHUEM2_ENDOMETRIUM	1	1	0.0286	TRUE	1	0	0	1	0	TRUE	ACH-000909
HCC2157_BREAST	DNMT1--KEAP1	390	71	DNMT1	17195	chr19:10273343:-	KEAP1	49935	chr19:10597494:-	ONLY_REF_SPLICE	YES	257	137	0.64	0.77	4.2159	0.7675	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,KEAP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:10596796-10614417:-,kelch_like_ECH_associated_protein_1	HCC2157_BREAST	0.64	0.77	4.9834	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PSMD3--PPP1R1B	253	71	PSMD3	6238	chr17:38146450:+	PPP1R1B	15768	chr17:37783559:+	ONLY_REF_SPLICE	YES	236	28	0.58	0.92	2.735	0.7675	PSMD3->chr17:38137050-38154213:+,proteasome_26S_subunit,_non-ATPase_3,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	HCC2157_BREAST	0.58	0.92	3.5025	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RANBP1--TANGO2	228	101	RANBP1	4212	chr22:20106672:+	TANGO2	26962	chr22:20050861:+	ONLY_REF_SPLICE	YES	340	45	0.49	0.88	2.4647	1.0918	LOCAL_REARRANGEMENT:+:[50012],RANBP1->RAN_binding_protein_1,chr22:20103461-20114878:+,TANGO2->chr22:20004537-20053449:+,transport_and_golgi_organization_2_homolog	HCC2157_BREAST	0.49	0.88	3.5565	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	CDCA4--JAG2	192	32	CDCA4	1150	chr14:105487336:-	JAG2	14802	chr14:105615657:-	ONLY_REF_SPLICE	YES	7	137	0.97	0.62	2.0755	0.3459	CDCA4->cell_division_cycle_associated_4,chr14:105475910-105487485:-,JAG2->Oncogene{Bushman},chr14:105607318-105635161:-,jagged_2	HCC2157_BREAST	0.62	0.97	2.4214	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	SMYD3--ZNF670	147	43	SMYD3	1259	chr1:246670356:-	ZNF670	46503	chr1:247109129:-	ONLY_REF_SPLICE	YES	57	15	0.77	0.93	1.5891	0.4648	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670	HCC2157_BREAST	0.77	0.93	2.0539	TRUE	0	2	0	1	2	TRUE	ACH-000691
HCC2157_BREAST	RP11-730G20.2--CTC-471F3.4	110	30	RP11-730G20.2	1920	chr8:75515560:-	CTC-471F3.4	5028	chr19:40449608:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1891	0.3243	RP11-730G20.2->chr8:75515479-75516479:-,CTC-471F3.4->chr19:40448563-40449634:-	HCC2157_BREAST	1	1	1.5134	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RBM14--PACS1	82	29	RBM14	8780	chr11:66394135:+	PACS1	20347	chr11:65983590:+	INCL_NON_REF_SPLICE	YES	16	95	0.87	0.54	0.8864	0.3135	Cosmic{samples=2,mutations=2,papers=1},RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	HCC2157_BREAST	0.54	0.87	1.1999	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PRRC2B--PPAPDC3	70	66	PRRC2B	9243	chr9:134323191:+	PPAPDC3	44222	chr9:134183310:+	ONLY_REF_SPLICE	YES	205	0	0.4	1	0.7567	0.7135	LOCAL_REARRANGEMENT:+:[84831],PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,PPAPDC3->chr9:134165081-134184649:+	HCC2157_BREAST	0.4	1	1.4702	TRUE	0	0	0	2	0	TRUE	ACH-000691
HCC2157_BREAST	ASCC1--MICU1	77	37	ASCC1	7701	chr10:73963185:-	MICU1	44374	chr10:74135630:-	ONLY_REF_SPLICE	YES	327	167	0.26	0.41	0.8324	0.4	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	HCC2157_BREAST	0.26	0.41	1.2324	TRUE	0	0	0	2	0	TRUE	ACH-000691
HCC2157_BREAST	PSPC1--FAM179A	56	12	PSPC1	7403	chr13:20304379:-	FAM179A	21110	chr2:29217591:+	ONLY_REF_SPLICE	YES	121	0	0.36	1	0.6054	0.1297	PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,FAM179A->chr2:29179477-29284239:+,family_with_sequence_similarity_179_member_A	HCC2157_BREAST	0.36	1	0.7351	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	NAP1L4--GPBP1	49	16	NAP1L4	21555	chr11:2972489:-	GPBP1	33597	chr5:56526673:+	ONLY_REF_SPLICE	YES	197	272	0.25	0.19	0.5297	0.173	NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4,GPBP1->GC-rich_promoter_binding_protein_1,chr5:56469775-56560506:+	HCC2157_BREAST	0.19	0.25	0.7027	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RAB11FIP3--TUBB3	47	13	RAB11FIP3	4291	chr16:521389:+	TUBB3	30030	chr16:89998979:+	ONLY_REF_SPLICE	YES	83	280	0.42	0.18	0.5081	0.1405	RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,TUBB3->chr16:89985573-90002500:+,chr16:89987800-90005169:+,tubulin_beta_3_class_III	HCC2157_BREAST	0.18	0.42	0.6486	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PRMT7--SLC7A6	44	11	PRMT7	7513	chr16:68358735:+	SLC7A6	32266	chr16:68308594:+	ONLY_REF_SPLICE	YES	45	39	0.55	0.59	0.4756	0.1189	LOCAL_REARRANGEMENT:+:[9155],PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7,SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6	HCC2157_BREAST	0.55	0.59	0.5945	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	NUDT3--BRPF3	33	8	NUDT3	1411	chr6:34360041:-	BRPF3	19788	chr6:36168074:+	ONLY_REF_SPLICE	YES	214	8	0.16	0.84	0.3567	0.0865	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,BRPF3->bromodomain_and_PHD_finger_containing_3,chr6:36164521-36200567:+	HCC2157_BREAST	0.16	0.84	0.4432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RASA2--ACPL2	31	15	RASA2	20422	chr3:141305594:+	ACPL2	43559	chr3:140997184:+	ONLY_REF_SPLICE	YES	19	20	0.71	0.7	0.3351	0.1622	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,ACPL2->chr3:140947568-141013748:+	HCC2157_BREAST	0.7	0.71	0.4973	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MEGF6--RP5-1092A11.2	29	11	MEGF6	10304	chr1:3431114:-	RP5-1092A11.2	33955	chr1:3629002:-	ONLY_REF_SPLICE	YES	187	0	0.18	1	0.3135	0.1189	MEGF6->chr1:3406484-3528059:-,multiple_EGF_like_domains_6,RP5-1092A11.2->chr1:3628764-3630862:-	HCC2157_BREAST	0.18	1	0.4324	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RRBP1--OVOL2	26	21	RRBP1	1268	chr20:17662673:-	OVOL2	34096	chr20:18005596:-	ONLY_REF_SPLICE	YES	345	19	0.12	0.71	0.2811	0.227	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},RRBP1->chr20:17594323-17662940:-,ribosome_binding_protein_1,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	HCC2157_BREAST	0.12	0.71	0.5081	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	LHFPL2--ARSB	26	15	LHFPL2	7033	chr5:77928087:-	ARSB	36082	chr5:78077797:-	ONLY_REF_SPLICE	YES	19	6	0.68	0.87	0.2811	0.1622	LOCAL_REARRANGEMENT:-:[7188],LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,ARSB->arylsulfatase_B,chr5:78073032-78281910:-	HCC2157_BREAST	0.68	0.87	0.4433	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	AXIN1--LMF1	25	17	AXIN1	6640	chr16:354304:-	LMF1	41695	chr16:904706:-	ONLY_REF_SPLICE	YES	84	38	0.33	0.53	0.2703	0.1838	AXIN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},axin_1,chr16:337440-402673:-,LMF1->Oncogene{Bushman},chr16:903634-1031318:-,lipase_maturation_factor_1	HCC2157_BREAST	0.33	0.53	0.4541	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	THRAP3--AGO3	26	11	THRAP3	12719	chr1:36762371:+	AGO3	24115	chr1:36437625:+	ONLY_REF_SPLICE	YES	269	13	0.12	0.74	0.2811	0.1189	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+	HCC2157_BREAST	0.12	0.74	0.4	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	FRYL--OCIAD2	24	3	FRYL	1245	chr4:48782095:-	OCIAD2	84248	chr4:48906628:-	ONLY_REF_SPLICE	YES	4	147	0.87	0.16	0.2594	0.0324	YOSHIHARA_TCGA_num_samples[LUAD:1|PRAD:1],{Klijn_CCL:Kidney=1},FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,OCIAD2->OCIA_domain_containing_2,chr4:48887036-48908954:-	HCC2157_BREAST	0.16	0.87	0.2918	TRUE	0	2	0	1	1	TRUE	ACH-000691
HCC2157_BREAST	RRBP1--OVOL2	19	23	RRBP1	2345	chr20:17660644:-	OVOL2	34096	chr20:18005596:-	ONLY_REF_SPLICE	YES	344	19	0.11	0.69	0.2054	0.2486	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},RRBP1->chr20:17594323-17662940:-,ribosome_binding_protein_1,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	HCC2157_BREAST	0.11	0.69	0.454	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	GRHL2--NCALD	21	8	GRHL2	9035	chr8:102589747:+	NCALD	48590	chr8:102705124:-	ONLY_REF_SPLICE	YES	58	8	0.33	0.78	0.227	0.0865	LOCAL_INVERSION:+:-:[16817],GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2,NCALD->chr8:102698771-103137135:-,neurocalcin_delta	HCC2157_BREAST	0.33	0.78	0.3135	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	CORO7--VPS13D	17	17	CORO7	7741	chr16:4462357:-	VPS13D	106135	chr1:12516054:+	ONLY_REF_SPLICE	YES	38	54	0.47	0.39	0.1838	0.1838	CORO7->chr16:4404543-4475706:-,coronin_7,VPS13D->chr1:12290124-12572099:+,vacuolar_protein_sorting_13_homolog_D	HCC2157_BREAST	0.39	0.47	0.3676	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	CORO7--VPS13D	16	10	CORO7	3926	chr16:4466460:-	VPS13D	106135	chr1:12516054:+	ONLY_REF_SPLICE	YES	43	54	0.38	0.33	0.173	0.1081	CORO7->chr16:4404543-4475706:-,coronin_7,VPS13D->chr1:12290124-12572099:+,vacuolar_protein_sorting_13_homolog_D	HCC2157_BREAST	0.33	0.38	0.2811	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	GNAI2--RBM6	15	4	GNAI2	14880	chr3:50295146:+	RBM6	31078	chr3:50085678:+	ONLY_REF_SPLICE	YES	161	73	0.11	0.21	0.1622	0.0432	GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+,RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+	HCC2157_BREAST	0.11	0.21	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RGS3--SLC31A2	14	4	RGS3	32481	chr9:116344522:+	SLC31A2	50006	chr9:115925029:+	ONLY_REF_SPLICE	YES	35	9	0.34	0.67	0.1513	0.0432	RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3,SLC31A2->chr9:115913222-115926417:+,solute_carrier_family_31_member_2	HCC2157_BREAST	0.34	0.67	0.1945	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	TTC39A--NRD1	13	2	TTC39A	25542	chr1:51754511:-	NRD1	38402	chr1:52293541:-	ONLY_REF_SPLICE	YES	104	143	0.13	0.09	0.1405	0.0216	TTC39A->chr1:51752930-51810788:-,tetratricopeptide_repeat_domain_39A,NRD1->chr1:52254863-52344477:-	HCC2157_BREAST	0.09	0.13	0.1621	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RRBP1--OVOL2	7	23	RRBP1	2349	chr20:17660640:-	OVOL2	34096	chr20:18005596:-	INCL_NON_REF_SPLICE	YES	353	19	0.08	0.61	0.0757	0.2486	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},RRBP1->chr20:17594323-17662940:-,ribosome_binding_protein_1,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	HCC2157_BREAST	0.08	0.61	0.3243	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	ASCC1--MICU1	3	37	ASCC1	7701	chr10:73963185:-	MICU1	43254	chr10:74139341:-	ONLY_REF_SPLICE	YES	327	185	0.11	0.18	0.0324	0.4	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	HCC2157_BREAST	0.11	0.18	0.4324	TRUE	0	0	0	2	0	TRUE	ACH-000691
HCC2157_BREAST	INTS4--GAB2	12	1	INTS4	2281	chr11:77702154:-	GAB2	38278	chr11:77991947:-	ONLY_REF_SPLICE	YES	39	5	0.25	0.72	0.1297	0.0108	Cosmic{samples=2,mutations=2,papers=1},Mitelman{CA_ad=1},INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	HCC2157_BREAST	0.25	0.72	0.1405	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	GMDS--PDE8B	11	4	GMDS	1372	chr6:2245555:-	PDE8B	26404	chr5:76607819:+	ONLY_REF_SPLICE	YES	19	0	0.44	1	0.1189	0.0432	Cosmic{samples=2,mutations=2,papers=1},GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,PDE8B->chr5:76506274-76725632:+,phosphodiesterase_8B	HCC2157_BREAST	0.44	1	0.1621	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	EZH2--PSD3	11	3	EZH2	10164	chr7:148523561:-	PSD3	38833	chr8:18662408:-	ONLY_REF_SPLICE	YES	109	10	0.11	0.58	0.1189	0.0324	EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit,PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3	HCC2157_BREAST	0.11	0.58	0.1513	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PRMT7--SLC7A6	8	14	PRMT7	7513	chr16:68358735:+	SLC7A6	31393	chr16:68307721:+	ONLY_REF_SPLICE	YES	45	37	0.33	0.37	0.0865	0.1513	LOCAL_REARRANGEMENT:+:[9155],PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7,SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6	HCC2157_BREAST	0.33	0.37	0.2378	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	IL6R--ATP8B2	10	5	IL6R	8582	chr1:154420647:+	ATP8B2	22871	chr1:154302872:+	ONLY_REF_SPLICE	YES	20	0	0.43	1	0.1081	0.0541	Cosmic{samples=2,mutations=2,papers=1},LOCAL_REARRANGEMENT:+:[53886],IL6R->chr1:154377669-154441926:+,interleukin_6_receptor,ATP8B2->ATPase_phospholipid_transporting_8B2,chr1:154298029-154323783:+	HCC2157_BREAST	0.43	1	0.1622	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RASA2--ACPL2	7	15	RASA2	20425	chr3:141305597:+	ACPL2	43559	chr3:140997184:+	ONLY_REF_SPLICE	YES	21	20	0.51	0.52	0.0757	0.1622	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,ACPL2->chr3:140947568-141013748:+	HCC2157_BREAST	0.51	0.52	0.2379	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	ODF2--DNM1	9	1	ODF2	7230	chr9:131231632:+	DNM1	48109	chr9:131015380:+	ONLY_REF_SPLICE	YES	122	10	0.08	0.5	0.0973	0.0108	ODF2->chr9:131217465-131263571:+,outer_dense_fiber_of_sperm_tails_2,DNM1->chr9:130965658-131017527:+,dynamin_1	HCC2157_BREAST	0.08	0.5	0.1081	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RAB11FIP3--TUBB3	6	13	RAB11FIP3	5540	chr16:525098:+	TUBB3	30030	chr16:89998979:+	ONLY_REF_SPLICE	YES	96	280	0.17	0.06	0.0649	0.1405	RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,TUBB3->chr16:89985573-90002500:+,chr16:89987800-90005169:+,tubulin_beta_3_class_III	HCC2157_BREAST	0.06	0.17	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RP11-730G20.2--CTC-471F3.4	3	25	RP11-730G20.2	1926	chr8:75515554:-	CTC-471F3.4	5038	chr19:40449598:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.2703	RP11-730G20.2->chr8:75515479-75516479:-,CTC-471F3.4->chr19:40448563-40449634:-	HCC2157_BREAST	1	1	0.3027	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	SNX30--KIAA1958	9	0	SNX30	3623	chr9:115580095:+	KIAA1958	31722	chr9:115380151:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0973	0	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Blood_Vessel=[count:1=pct:0.3],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Lung=1,Adipose_-_Subcutaneous=1,Testis=1},YOSHIHARA_TCGA_num_samples[BLCA:1|PRAD:1],LOCAL_REARRANGEMENT:+:[81441],SNX30->chr9:115513118-115643951:+,sorting_nexin_family_member_30,KIAA1958->KIAA1958,chr9:115249127-115431677:+	HCC2157_BREAST	1	1	0.0973	TRUE	1	8	0	1	8	TRUE	ACH-000691
HCC2157_BREAST	SETD7--NDUFC1	8	3	SETD7	13585	chr4:140468074:-	NDUFC1	35729	chr4:140217114:-	ONLY_REF_SPLICE	YES	17	10	0.39	0.52	0.0865	0.0324	SETD7->SET_domain_containing_lysine_methyltransferase_7,chr4:140417095-140527853:-,NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-	HCC2157_BREAST	0.39	0.52	0.1189	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	NAA40--C11orf84	7	6	NAA40	6510	chr11:63721521:+	C11orf84	14216	chr11:63585277:+	ONLY_REF_SPLICE	YES	48	60	0.21	0.18	0.0757	0.0649	NAA40->N(alpha)-acetyltransferase_40,_NatD_catalytic_subunit,chr11:63706431-63724800:+,C11orf84->chr11:63580860-63595190:+,chromosome_11_open_reading_frame_84	HCC2157_BREAST	0.18	0.21	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	STYXL1--AC005077.12	7	5	STYXL1	1193	chr7:75677130:-	AC005077.12	15046	chr7:75738080:-	INCL_NON_REF_SPLICE	YES	17	0	0.41	1	0.0757	0.0541	LOCAL_REARRANGEMENT:-:[42427],STYXL1->chr7:75625656-75677322:-,serine/threonine/tyrosine_interacting-like_1,AC005077.12->chr7:75719749-75738097:-	HCC2157_BREAST	0.41	1	0.1298	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	LHFPL2--ARSB	4	15	LHFPL2	7033	chr5:77928087:-	ARSB	34901	chr5:78079320:-	INCL_NON_REF_SPLICE	YES	19	5	0.5	0.79	0.0432	0.1622	LOCAL_REARRANGEMENT:-:[7188],LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,ARSB->arylsulfatase_B,chr5:78073032-78281910:-	HCC2157_BREAST	0.5	0.79	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RP5-1043L13.1--CDH26	7	3	RP5-1043L13.1	10254	chr20:58713700:+	CDH26	46694	chr20:58581768:+	ONLY_REF_SPLICE	YES	5	1	0.67	0.91	0.0757	0.0324	LOCAL_REARRANGEMENT:+:[53829],RP5-1043L13.1->chr20:58662895-59102516:+,CDH26->cadherin_26,chr20:58533471-58609066:+	HCC2157_BREAST	0.67	0.91	0.1081	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	C11orf80--CCS	5	6	C11orf80	7297	chr11:66555740:+	CCS	25037	chr11:66361113:+	ONLY_REF_SPLICE	YES	44	91	0.2	0.11	0.0541	0.0649	C11orf80->chr11:66511922-66610987:+,chromosome_11_open_reading_frame_80,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC2157_BREAST	0.11	0.2	0.119	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	LHFPL2--ARSB	5	6	LHFPL2	4775	chr5:77944322:-	ARSB	36082	chr5:78077797:-	ONLY_REF_SPLICE	YES	12	6	0.48	0.65	0.0541	0.0649	LOCAL_REARRANGEMENT:-:[7188],LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,ARSB->arylsulfatase_B,chr5:78073032-78281910:-	HCC2157_BREAST	0.48	0.65	0.119	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	CENPI--TMEM35	5	5	CENPI	13569	chrX:100387445:+	TMEM35	27481	chrX:100349562:+	ONLY_REF_SPLICE	YES	32	0	0.24	1	0.0541	0.0541	LOCAL_REARRANGEMENT:+:[1825],CENPI->centromere_protein_I,chrX:100353178-100418670:+,TMEM35->chrX:100333709-100351353:+,transmembrane_protein_35	HCC2157_BREAST	0.24	1	0.1082	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PSPC1--FAM179A	2	14	PSPC1	9631	chr13:20279802:-	FAM179A	21110	chr2:29217591:+	ONLY_REF_SPLICE	YES	175	0	0.08	1	0.0216	0.1513	PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,FAM179A->chr2:29179477-29284239:+,family_with_sequence_similarity_179_member_A	HCC2157_BREAST	0.08	1	0.1729	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	NAA40--C11orf84	3	9	NAA40	7622	chr11:63722633:+	C11orf84	14216	chr11:63585277:+	INCL_NON_REF_SPLICE	YES	64	60	0.16	0.17	0.0324	0.0973	NAA40->N(alpha)-acetyltransferase_40,_NatD_catalytic_subunit,chr11:63706431-63724800:+,C11orf84->chr11:63580860-63595190:+,chromosome_11_open_reading_frame_84	HCC2157_BREAST	0.16	0.17	0.1297	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	GMDS--PDE8B	4	3	GMDS	1372	chr6:2245555:-	PDE8B	26407	chr5:76607822:+	INCL_NON_REF_SPLICE	YES	19	0	0.27	1	0.0432	0.0324	Cosmic{samples=2,mutations=2,papers=1},GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,PDE8B->chr5:76506274-76725632:+,phosphodiesterase_8B	HCC2157_BREAST	0.27	1	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PPP6R2--MOV10L1	4	3	PPP6R2	16436	chr22:50873510:+	MOV10L1	32611	chr22:50546565:+	ONLY_REF_SPLICE	YES	12	0	0.37	1	0.0432	0.0324	PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2,MOV10L1->Mov10_RISC_complex_RNA_helicase_like_1,chr22:50528308-50600119:+	HCC2157_BREAST	0.37	1	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MTMR3--NF2	4	2	MTMR3	22609	chr22:30418686:+	NF2	34190	chr22:30032740:+	ONLY_REF_SPLICE	YES	14	44	0.3	0.12	0.0432	0.0216	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin)	HCC2157_BREAST	0.12	0.3	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PRMT7--SLC7A6	1	14	PRMT7	7513	chr16:68358735:+	SLC7A6	31370	chr16:68307698:+	ONLY_REF_SPLICE	NO	45	38	0.25	0.28	0.0108	0.1513	LOCAL_REARRANGEMENT:+:[9155],PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7,SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6	HCC2157_BREAST	0.25	0.28	0.1621	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PDZRN3--DCSTAMP	3	5	PDZRN3	12814	chr3:73453299:-	DCSTAMP	26637	chr8:105351861:+	INCL_NON_REF_SPLICE	YES	25	0	0.24	1	0.0324	0.0541	PDZRN3->PDZ_domain_containing_ring_finger_3,chr3:73431584-73674091:-,DCSTAMP->chr8:105351315-105368917:+,dendrocyte_expressed_seven_transmembrane_protein	HCC2157_BREAST	0.24	1	0.0865	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	CORO7--VPS13D	1	12	CORO7	6789	chr16:4463309:-	VPS13D	106135	chr1:12516054:+	ONLY_REF_SPLICE	YES	44	54	0.23	0.19	0.0108	0.1297	CORO7->chr16:4404543-4475706:-,coronin_7,VPS13D->chr1:12290124-12572099:+,vacuolar_protein_sorting_13_homolog_D	HCC2157_BREAST	0.19	0.23	0.1405	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PDZRN3--DCSTAMP	3	4	PDZRN3	12814	chr3:73453299:-	DCSTAMP	28445	chr8:105360769:+	ONLY_REF_SPLICE	YES	25	1	0.22	0.88	0.0324	0.0432	PDZRN3->PDZ_domain_containing_ring_finger_3,chr3:73431584-73674091:-,DCSTAMP->chr8:105351315-105368917:+,dendrocyte_expressed_seven_transmembrane_protein	HCC2157_BREAST	0.22	0.88	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	TMED4--MYO1G	4	0	TMED4	2195	chr7:44620692:-	MYO1G	14473	chr7:45011824:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	TMED4->chr7:44617493-44621886:-,transmembrane_p24_trafficking_protein_4,MYO1G->chr7:45002261-45018697:-,myosin_IG	HCC2157_BREAST	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	EZH2--PSD3	3	3	EZH2	9469	chr7:148524256:-	PSD3	38833	chr8:18662408:-	ONLY_REF_SPLICE	YES	95	10	0.06	0.38	0.0324	0.0324	EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit,PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3	HCC2157_BREAST	0.06	0.38	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	CDCA4--JAG2	3	2	CDCA4	1145	chr14:105487341:-	JAG2	14802	chr14:105615657:-	INCL_NON_REF_SPLICE	YES	1	137	0.83	0.04	0.0324	0.0216	CDCA4->cell_division_cycle_associated_4,chr14:105475910-105487485:-,JAG2->Oncogene{Bushman},chr14:105607318-105635161:-,jagged_2	HCC2157_BREAST	0.04	0.83	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	SKIV2L2--RP11-506H20.1	3	2	SKIV2L2	17595	chr5:54654526:+	RP11-506H20.1	39450	chr5:54590668:+	ONLY_REF_SPLICE	YES	86	0	0.05	1	0.0324	0.0216	LOCAL_REARRANGEMENT:+:[12559],SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+,RP11-506H20.1->chr5:54529762-54591029:+	HCC2157_BREAST	0.05	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	NOTCH1--SAPCD2	3	1	NOTCH1	2216	chr9:139438476:-	SAPCD2	33490	chr9:139960826:-	ONLY_REF_SPLICE	YES	17	14	0.19	0.22	0.0324	0.0108	NOTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:139388896-139440314:-,notch_1,SAPCD2->chr9:139956581-139965040:-,suppressor_APC_domain_containing_2	HCC2157_BREAST	0.19	0.22	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	SETD7--NDUFC1	3	1	SETD7	13585	chr4:140468074:-	NDUFC1	36543	chr4:140216300:-	ONLY_REF_SPLICE	YES	17	57	0.19	0.07	0.0324	0.0108	SETD7->SET_domain_containing_lysine_methyltransferase_7,chr4:140417095-140527853:-,NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-	HCC2157_BREAST	0.07	0.19	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RP11-66B24.5--ASB7	3	0	RP11-66B24.5	2271	chr15:101359766:+	ASB7	12826	chr15:101188528:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:+:[64544],RP11-66B24.5->chr15:101256454-101368702:+,ASB7->ankyrin_repeat_and_SOCS_box_containing_7,chr15:101142739-101191910:+	HCC2157_BREAST	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	ST3GAL2--COG4	3	0	ST3GAL2	1289	chr16:70472852:-	COG4	27893	chr16:70534994:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:-:[41331],ST3GAL2->ST3_beta-galactoside_alpha-2,3-sialyltransferase_2,chr16:70413338-70473140:-,COG4->chr16:70514471-70557468:-,component_of_oligomeric_golgi_complex_4	HCC2157_BREAST	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	TYMS--SET	3	0	TYMS	4286	chr18:662320:+	SET	17850	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2157_BREAST	1	1	0.0324	TRUE	0	0	0	3	0	TRUE	ACH-000691
HCC2157_BREAST	ZNF620--PBRM1	3	0	ZNF620	6381	chr3:40558181:+	PBRM1	26098	chr3:52668831:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	ZNF620->chr3:40547483-40560227:+,zinc_finger_protein_620,PBRM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:52579368-52719933:-,polybromo_1	HCC2157_BREAST	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MTMR3--NF2	2	2	MTMR3	23395	chr22:30419472:+	NF2	34190	chr22:30032740:+	ONLY_REF_SPLICE	YES	17	44	0.19	0.08	0.0216	0.0216	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin)	HCC2157_BREAST	0.08	0.19	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MEGF6--RP5-1092A11.2	1	5	MEGF6	9452	chr1:3431966:-	RP5-1092A11.2	33955	chr1:3629002:-	ONLY_REF_SPLICE	YES	149	0	0.04	1	0.0108	0.0541	MEGF6->chr1:3406484-3528059:-,multiple_EGF_like_domains_6,RP5-1092A11.2->chr1:3628764-3630862:-	HCC2157_BREAST	0.04	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PDZRN3--DCSTAMP	1	5	PDZRN3	12814	chr3:73453299:-	DCSTAMP	26810	chr8:105352034:+	ONLY_REF_SPLICE	NO	25	1	0.19	0.86	0.0108	0.0541	PDZRN3->PDZ_domain_containing_ring_finger_3,chr3:73431584-73674091:-,DCSTAMP->chr8:105351315-105368917:+,dendrocyte_expressed_seven_transmembrane_protein	HCC2157_BREAST	0.19	0.86	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	AC002116.7--UBTF	2	0	AC002116.7	3379	chr19:36510286:+	UBTF	10974	chr17:42295664:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	AC002116.7->chr19:36505410-36536874:+,UBTF->chr17:42282401-42298994:-,upstream_binding_transcription_factor,_RNA_polymerase_I	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	AHNAK--C11orf48	2	0	AHNAK	5883	chr11:62302475:-	C11orf48	32882	chr11:62437275:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,C11orf48->chr11:62430287-62439727:-	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	ANXA7--SYNPO2L	2	0	ANXA7	12208	chr10:75138669:-	SYNPO2L	20807	chr10:75414038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ANXA7->annexin_A7,chr10:75134859-75173834:-,SYNPO2L->chr10:75404639-75423561:-,synaptopodin_2_like	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	ATP6V1C1--RNF19A	2	0	ATP6V1C1	1163	chr8:104033453:+	RNF19A	28475	chr8:101300495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+,RNF19A->chr8:101269288-101348446:-,ring_finger_protein_19A,_RBR_E3_ubiquitin_protein_ligase	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	EPB41L1--RP4-550H1.4	2	0	EPB41L1	5683	chr20:34700402:+	RP4-550H1.4	41494	chr20:34662229:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_REARRANGEMENT:+:[6244],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP4-550H1.4->chr20:34660363-34673182:+	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	2	0	TRUE	ACH-000691
HCC2157_BREAST	PPP1R16A--BAI1	1	4	PPP1R16A	1554	chr8:145703905:+	BAI1	29266	chr8:143592293:+	ONLY_REF_SPLICE	YES	128	13	0.04	0.28	0.0108	0.0432	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,BAI1->chr8:143530791-143626370:+	HCC2157_BREAST	0.04	0.28	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PTPRF--MPL	2	0	PTPRF	7148	chr1:44019612:+	MPL	38469	chr1:43803770:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	HGNC_GENEFAM,PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F,MPL->ArcherDX_panel,FoundationOne_panel,MPL_proto-oncogene,_thrombopoietin_receptor,Oncogene{Bushman},chr1:43803478-43818443:+	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PVT1--LINC00536	2	0	PVT1	1202	chr8:128806980:+	LINC00536	33100	chr8:117142505:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PPP1R16A--BAI1	1	3	PPP1R16A	1159	chr8:145703510:+	BAI1	29266	chr8:143592293:+	ONLY_REF_SPLICE	YES	52	13	0.07	0.24	0.0108	0.0324	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,BAI1->chr8:143530791-143626370:+	HCC2157_BREAST	0.07	0.24	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PPP6R2--MOV10L1	1	3	PPP6R2	15320	chr22:50870758:+	MOV10L1	32611	chr22:50546565:+	ONLY_REF_SPLICE	NO	15	0	0.21	1	0.0108	0.0324	PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2,MOV10L1->Mov10_RISC_complex_RNA_helicase_like_1,chr22:50528308-50600119:+	HCC2157_BREAST	0.21	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MYLK--ROPN1	1	2	MYLK	4376	chr3:123550395:-	ROPN1	60698	chr3:123700271:-	ONLY_REF_SPLICE	YES	3	3	0.5	0.5	0.0108	0.0216	LOCAL_REARRANGEMENT:-:[84190],MYLK->chr3:123328896-123603178:-,myosin_light_chain_kinase,ROPN1->chr3:123687368-123711025:-,rhophilin_associated_tail_protein_1	HCC2157_BREAST	0.5	0.5	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	INTS4--GAB2	1	1	INTS4	3451	chr11:77698575:-	GAB2	38278	chr11:77991947:-	ONLY_REF_SPLICE	NO	43	5	0.04	0.29	0.0108	0.0108	Cosmic{samples=2,mutations=2,papers=1},Mitelman{CA_ad=1},INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	HCC2157_BREAST	0.04	0.29	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	INTS4--GAB2	1	1	INTS4	2281	chr11:77702154:-	GAB2	37201	chr11:78029265:-	ONLY_REF_SPLICE	NO	39	7	0.05	0.22	0.0108	0.0108	Cosmic{samples=2,mutations=2,papers=1},Mitelman{CA_ad=1},INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	HCC2157_BREAST	0.05	0.22	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	SETD7--NDUFC1	1	1	SETD7	11385	chr4:140477252:-	NDUFC1	35729	chr4:140217114:-	ONLY_REF_SPLICE	YES	17	10	0.11	0.17	0.0108	0.0108	SETD7->SET_domain_containing_lysine_methyltransferase_7,chr4:140417095-140527853:-,NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-	HCC2157_BREAST	0.11	0.17	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
UACC257_SKIN	TMTC2--RP11-328J6.1	14	4	TMTC2	1790	chr12:83081448:+	RP11-328J6.1	25780	chr12:103475315:-	ONLY_REF_SPLICE	YES	15	0	0.55	1	0.1981	0.0566	TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2,RP11-328J6.1->chr12:103474728-103572453:-	UACC257_SKIN	0.55	1	0.2547	TRUE	0	0	0	1	0	TRUE	ACH-000579
UACC257_SKIN	PMEL--NDUFB1	5	0	PMEL	4690	chr12:56359720:-	NDUFB1	18708	chr14:92583986:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0708	0	PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,NDUFB1->NADH:ubiquinone_oxidoreductase_subunit_B1,chr14:92582466-92588261:-	UACC257_SKIN	1	1	0.0708	TRUE	0	1	0	1	0	TRUE	ACH-000579
UACC257_SKIN	RBMS1--PSMD14	2	0	RBMS1	1506	chr2:161349800:-	PSMD14	35581	chr2:162223989:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	UACC257_SKIN	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000579
OVKATE_OVARY	B4GALT5--RP11-435B5.7	103	62	B4GALT5	3552	chr20:48263502:-	RP11-435B5.7	16222	chr1:143533272:-	ONLY_REF_SPLICE	YES	159	0	0.51	1	1.3308	0.8011	B4GALT5->Oncogene{Bushman},beta-1,4-galactosyltransferase_5,chr20:48249482-48330415:-,RP11-435B5.7->chr1:143527555-143533272:-	OVKATE_OVARY	0.51	1	2.1319	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	TXNIP--OTUD7B	107	30	TXNIP	3057	chr1:145440525:+	OTUD7B	9397	chr1:149949511:-	ONLY_REF_SPLICE	YES	842	62	0.14	0.69	1.3825	0.3876	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,OTUD7B->OTU_deubiquitinase_7B,chr1:149909705-149982625:-	OVKATE_OVARY	0.14	0.69	1.7701	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	AFAP1--ABLIM2	79	18	AFAP1	1271	chr4:7941383:-	ABLIM2	34469	chr4:8108364:-	ONLY_REF_SPLICE	YES	81	10	0.54	0.91	1.0207	0.2326	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	OVKATE_OVARY	0.54	0.91	1.2533	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	HADHA--ZNF385B	63	25	HADHA	7852	chr2:26453060:-	ZNF385B	47240	chr2:180311497:-	ONLY_REF_SPLICE	YES	66	4	0.57	0.96	0.814	0.323	{Klijn_CCL:Ovary=1},HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit,ZNF385B->chr2:180306709-180726232:-,zinc_finger_protein_385B	OVKATE_OVARY	0.57	0.96	1.137	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	ABI1--NEURL	57	19	ABI1	1341	chr10:27149676:-	NEURL	23788	chr10:105330629:+	ONLY_REF_SPLICE	YES	40	0	0.66	1	0.7365	0.2455	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,NEURL->chr10:105253736-105352309:+	OVKATE_OVARY	0.66	1	0.982	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	ZNF341--RP11-582E3.2	49	0	ZNF341	1396	chr20:32319858:+	RP11-582E3.2	23003	chr12:27314324:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6331	0	ZNF341->chr20:32319463-32380075:+,zinc_finger_protein_341,RP11-582E3.2->chr12:27258084-27314326:-	OVKATE_OVARY	1	1	0.6331	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	B4GALT5--RP11-435B5.7	35	32	B4GALT5	3552	chr20:48263502:-	RP11-435B5.7	17426	chr1:143529235:-	ONLY_REF_SPLICE	YES	159	1	0.3	0.99	0.4522	0.4135	B4GALT5->Oncogene{Bushman},beta-1,4-galactosyltransferase_5,chr20:48249482-48330415:-,RP11-435B5.7->chr1:143527555-143533272:-	OVKATE_OVARY	0.3	0.99	0.8657	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	B4GALT5--RP11-435B5.7	31	26	B4GALT5	3552	chr20:48263502:-	RP11-435B5.7	18464	chr1:143528126:-	ONLY_REF_SPLICE	YES	159	0	0.26	1	0.4005	0.3359	B4GALT5->Oncogene{Bushman},beta-1,4-galactosyltransferase_5,chr20:48249482-48330415:-,RP11-435B5.7->chr1:143527555-143533272:-	OVKATE_OVARY	0.26	1	0.7364	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	MCCC1--MCF2L2	25	8	MCCC1	11709	chr3:182775099:-	MCF2L2	41047	chr3:183059418:-	ONLY_REF_SPLICE	YES	90	1	0.27	0.97	0.323	0.1034	LOCAL_REARRANGEMENT:-:[61968],MCCC1->chr3:182733006-182833863:-,methylcrotonoyl-CoA_carboxylase_1,MCF2L2->MCF.2_cell_line_derived_transforming_sequence-like_2,chr3:182895831-183146566:-	OVKATE_OVARY	0.27	0.97	0.4264	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	RP11-274B21.1--RP11-155G14.6	21	1	RP11-274B21.1	2189	chr7:128173784:+	RP11-155G14.6	23326	chr7:128106617:+	ONLY_REF_SPLICE	YES	4	0	0.85	1	0.2713	0.0129	LOCAL_REARRANGEMENT:+:[62501],RP11-274B21.1->chr7:128171752-128269512:+,RP11-155G14.6->chr7:128095991-128109251:+	OVKATE_OVARY	0.85	1	0.2842	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	B4GALT5--RP11-435B5.7	3	62	B4GALT5	3552	chr20:48263502:-	RP11-435B5.7	16190	chr1:143533304:-	INCL_NON_REF_SPLICE	YES	159	0	0.29	1	0.0388	0.8011	B4GALT5->Oncogene{Bushman},beta-1,4-galactosyltransferase_5,chr20:48249482-48330415:-,RP11-435B5.7->chr1:143527555-143533272:-	OVKATE_OVARY	0.29	1	0.8399	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	HELQ--FAM175A	14	5	HELQ	5683	chr4:84367988:-	FAM175A	36848	chr4:84384761:-	ONLY_REF_SPLICE	YES	6	11	0.76	0.63	0.1809	0.0646	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[5083],HELQ->chr4:84328496-84377009:-,helicase,_POLQ-like,FAM175A->chr4:84382092-84444501:-,family_with_sequence_similarity_175_member_A	OVKATE_OVARY	0.63	0.76	0.2455	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	SLC45A3--SLC41A1	15	1	SLC45A3	1066	chr1:205649522:-	SLC41A1	15301	chr1:205770188:-	ONLY_REF_SPLICE	YES	0	22	1	0.42	0.1938	0.0129	HGNC_GENEFAM,SLC45A3->Oncogene{Bushman},chr1:205626979-205649587:-,solute_carrier_family_45_member_3,SLC41A1->chr1:205758221-205782876:-,solute_carrier_family_41_member_1	OVKATE_OVARY	0.42	1	0.2067	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	RP11-274B21.1--RP11-155G14.6	12	2	RP11-274B21.1	2189	chr7:128173784:+	RP11-155G14.6	22227	chr7:128097255:+	ONLY_REF_SPLICE	YES	4	0	0.78	1	0.1551	0.0258	LOCAL_REARRANGEMENT:+:[62501],RP11-274B21.1->chr7:128171752-128269512:+,RP11-155G14.6->chr7:128095991-128109251:+	OVKATE_OVARY	0.78	1	0.1809	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	WDR19--SLC8A1-AS1	8	4	WDR19	6519	chr4:39201213:+	SLC8A1-AS1	52818	chr2:40332049:+	ONLY_REF_SPLICE	YES	10	0	0.55	1	0.1034	0.0517	WDR19->WD_repeat_domain_19,chr4:39184024-39287430:+,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	OVKATE_OVARY	0.55	1	0.1551	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	CC2D1A--CEP112	6	3	CC2D1A	10090	chr19:14034624:+	CEP112	53316	chr17:63685336:-	ONLY_REF_SPLICE	YES	26	8	0.26	0.53	0.0775	0.0388	CC2D1A->chr19:14017014-14041692:+,coiled-coil_and_C2_domain_containing_1A,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	OVKATE_OVARY	0.26	0.53	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	HADHA--ZNF385B	5	3	HADHA	7852	chr2:26453060:-	ZNF385B	48282	chr2:180310455:-	ONLY_REF_SPLICE	YES	66	24	0.11	0.25	0.0646	0.0388	{Klijn_CCL:Ovary=1},HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit,ZNF385B->chr2:180306709-180726232:-,zinc_finger_protein_385B	OVKATE_OVARY	0.11	0.25	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	BCR--GNAZ	5	0	BCR	24501	chr22:23637342:+	GNAZ	42389	chr22:23437434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[54667],BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,GNAZ->G_protein_subunit_alpha_z,chr22:23412540-23467224:+	OVKATE_OVARY	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	CEP112--CC2D1A	4	4	CEP112	35052	chr17:63739186:-	CC2D1A	54964	chr19:14037330:+	ONLY_REF_SPLICE	YES	9	28	0.47	0.22	0.0517	0.0517	CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,CC2D1A->chr19:14017014-14041692:+,coiled-coil_and_C2_domain_containing_1A	OVKATE_OVARY	0.22	0.47	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	CC2D1A--CEP112	3	2	CC2D1A	9885	chr19:14034419:+	CEP112	53316	chr17:63685336:-	ONLY_REF_SPLICE	YES	50	8	0.09	0.38	0.0388	0.0258	CC2D1A->chr19:14017014-14041692:+,coiled-coil_and_C2_domain_containing_1A,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	OVKATE_OVARY	0.09	0.38	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	EXT1--SAMD12	3	2	EXT1	2769	chr8:119122324:-	SAMD12	31808	chr8:119209971:-	ONLY_REF_SPLICE	YES	38	7	0.12	0.42	0.0388	0.0258	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	OVKATE_OVARY	0.12	0.42	0.0646	TRUE	0	6	0	5	5	TRUE	ACH-000443
OVKATE_OVARY	WDR19--SLC8A1-AS1	3	1	WDR19	6519	chr4:39201213:+	SLC8A1-AS1	65978	chr2:40478824:+	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0388	0.0129	WDR19->WD_repeat_domain_19,chr4:39184024-39287430:+,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	OVKATE_OVARY	0.29	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	CEP112--CC2D1A	2	4	CEP112	35052	chr17:63739186:-	CC2D1A	55114	chr19:14037480:+	ONLY_REF_SPLICE	YES	9	32	0.4	0.16	0.0258	0.0517	CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,CC2D1A->chr19:14017014-14041692:+,coiled-coil_and_C2_domain_containing_1A	OVKATE_OVARY	0.16	0.4	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	DSTYK--SLC41A1	2	1	DSTYK	1329	chr1:205180399:-	SLC41A1	26250	chr1:205770188:-	ONLY_REF_SPLICE	YES	13	22	0.19	0.12	0.0258	0.0129	DSTYK->chr1:205111632-205180727:-,dual_serine/threonine_and_tyrosine_protein_kinase,SLC41A1->chr1:205758221-205782876:-,solute_carrier_family_41_member_1	OVKATE_OVARY	0.12	0.19	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	HDAC5--RECK	2	1	HDAC5	4273	chr17:42188097:-	RECK	42775	chr9:36107973:+	ONLY_REF_SPLICE	YES	25	0	0.11	1	0.0258	0.0129	HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5,RECK->chr9:36036430-36124448:+,reversion_inducing_cysteine_rich_protein_with_kazal_motifs	OVKATE_OVARY	0.11	1	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	KBTBD2--RP9P	2	1	KBTBD2	6728	chr7:32914604:-	RP9P	18459	chr7:32961042:-	ONLY_REF_SPLICE	YES	68	11	0.04	0.21	0.0258	0.0129	LOCAL_REARRANGEMENT:-:[22684],KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2,RP9P->chr7:32956427-32982788:-,retinitis_pigmentosa_9_pseudogene	OVKATE_OVARY	0.04	0.21	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	AGRN--NOC4L	2	0	AGRN	4732	chr1:970704:+	NOC4L	29706	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],{Klijn_CCL:Breast=1,Lung=1},AGRN->agrin,chr1:955503-991496:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	OVKATE_OVARY	1	1	0.0258	TRUE	0	12	0	2	3	TRUE	ACH-000443
OVKATE_OVARY	SPEN--BIRC5	2	0	SPEN	2608	chr1:16199631:+	BIRC5	31547	chr17:76212745:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,BIRC5->baculoviral_IAP_repeat_containing_5,chr17:76210267-76221717:+	OVKATE_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	TMBIM4--OVOL2	2	0	TMBIM4	1218	chr12:66563635:-	OVOL2	26880	chr20:17937681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	OVKATE_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	WDR19--SLC8A1-AS1	1	2	WDR19	6519	chr4:39201213:+	SLC8A1-AS1	53070	chr2:40332301:+	ONLY_REF_SPLICE	NO	10	1	0.23	0.75	0.0129	0.0258	WDR19->WD_repeat_domain_19,chr4:39184024-39287430:+,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	OVKATE_OVARY	0.23	0.75	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	RP11-274B21.1--METTL2B	1	1	RP11-274B21.1	2189	chr7:128173784:+	METTL2B	23404	chr7:128119212:+	ONLY_REF_SPLICE	YES	4	42	0.33	0.05	0.0129	0.0129	LOCAL_REARRANGEMENT:+:[25096],RP11-274B21.1->chr7:128171752-128269512:+,METTL2B->chr7:128116783-128146656:+,methyltransferase_like_2B	OVKATE_OVARY	0.05	0.33	0.0258	TRUE	0	1	0	1	1	TRUE	ACH-000443
OVKATE_OVARY	WDR19--SLC8A1-AS1	1	1	WDR19	6519	chr4:39201213:+	SLC8A1-AS1	54332	chr2:40341142:+	ONLY_REF_SPLICE	NO	10	0	0.17	1	0.0129	0.0129	WDR19->WD_repeat_domain_19,chr4:39184024-39287430:+,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	OVKATE_OVARY	0.17	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000443
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	1514	498	TCF3	13408	chr19:1619110:-	PBX1	46216	chr1:164761731:+	ONLY_REF_SPLICE	YES	763	1	0.73	1	12.1412	3.9936	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	16.1348	TRUE	0	0	0	4	0	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHF21A--GLIS2	8	0	PHF21A	22701	chr11:45967391:-	GLIS2	42029	chr16:4386726:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0642	0	PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-,GLIS2->GLIS_family_zinc_finger_2,chr16:4364762-4389598:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0642	TRUE	0	1	0	1	1	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	6	3	CCDC26	6922	chr8:130365050:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0481	0.0241	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.0722	TRUE	0	0	0	6	0	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--SEPT7	4	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0321	TRUE	1	1	0	18	1	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	0	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0321	TRUE	0	2	0	11	2	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--ZFC3H1	2	0	CPSF6	11046	chr12:69656342:+	ZFC3H1	37555	chr12:72024734:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,ZFC3H1->chr12:72003252-72061505:-,zinc_finger_C3H1-type_containing	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHACTR3--RBM38	2	0	PHACTR3	9518	chr20:58322890:+	RBM38	30529	chr20:55982599:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	PHACTR3->chr20:58152564-58422766:+,phosphatase_and_actin_regulator_3,RBM38->RNA_binding_motif_protein_38,chr20:55966463-55984389:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNB1	2	0	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	10	0	7	3	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1149M10.2--CTC-326K19.6	2	0	RP11-1149M10.2	1128	chr8:82066641:+	CTC-326K19.6	10106	chr19:50413141:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	RP11-1149M10.2->chr8:82066514-82076834:+,CTC-326K19.6->chr19:50412758-50461648:-	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG5--PHF14	2	0	SNHG5	1780	chr6:86387672:-	PHF14	33722	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000922
IGR39_SKIN	TBL1X--WWC3	80	20	TBL1X	9851	chrX:9622362:+	WWC3	35204	chrX:10058811:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.9048	0.2262	TBL1X->chrX:9431335-9687780:+,transducin_(beta)-like_1X-linked,WWC3->WWC_family_member_3,chrX:9983602-10112518:+	IGR39_SKIN	1	1	1.131	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	SSH2--STK11	45	12	SSH2	1339	chr17:28256956:-	STK11	40377	chr19:1218416:+	ONLY_REF_SPLICE	YES	53	54	0.52	0.51	0.509	0.1357	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR39_SKIN	0.51	0.52	0.6447	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	SSH2--STK11	35	21	SSH2	5062	chr17:28175867:-	STK11	40377	chr19:1218416:+	ONLY_REF_SPLICE	YES	6	54	0.9	0.51	0.3959	0.2375	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR39_SKIN	0.51	0.9	0.6334	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	FAM101A--RP11-114H23.2	22	10	FAM101A	6449	chr12:124780182:+	RP11-114H23.2	14613	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	0	0.91	1	0.2488	0.1131	FAM101A->chr12:124457788-124800570:+,family_with_sequence_similarity_101_member_A,RP11-114H23.2->chr12:76087790-76092596:-	IGR39_SKIN	0.91	1	0.3619	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	SSH2--STK11	3	26	SSH2	5062	chr17:28175867:-	STK11	39246	chr19:1216267:+	ONLY_REF_SPLICE	YES	6	65	0.83	0.31	0.0339	0.2941	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR39_SKIN	0.31	0.83	0.328	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	AP000350.4--PKM	6	1	AP000350.4	3774	chr22:24236611:-	PKM	7428	chr15:72523509:-	INCL_NON_REF_SPLICE	YES	0	5	1	0.58	0.0679	0.0113	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	IGR39_SKIN	0.58	1	0.0792	TRUE	0	0	0	14	0	TRUE	ACH-000550
IGR39_SKIN	SSH2--STK11	2	14	SSH2	1339	chr17:28256956:-	STK11	39246	chr19:1216267:+	ONLY_REF_SPLICE	YES	53	65	0.23	0.2	0.0226	0.1583	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR39_SKIN	0.2	0.23	0.1809	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	CTB-113P19.1--FTL	3	3	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0339	0.0339	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	IGR39_SKIN	0.86	1	0.0678	TRUE	0	2	0	13	2	TRUE	ACH-000550
IGR39_SKIN	AP000350.4--PKM	3	1	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	5	1	0.44	0.0339	0.0113	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	IGR39_SKIN	0.44	1	0.0452	TRUE	0	0	0	14	0	TRUE	ACH-000550
IGR39_SKIN	ALDOA--EEF2	3	0	ALDOA	7433	chr16:30077205:+	EEF2	15013	chr19:3985461:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.05%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	IGR39_SKIN	1	1	0.0339	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	ALDOA--RPS28	3	0	ALDOA	7439	chr16:30077211:+	RPS28	15370	chr19:8386405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	IGR39_SKIN	1	1	0.0339	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	ALDOA--RPS28	3	0	ALDOA	7412	chr16:30077184:+	RPS28	15347	chr19:8386382:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	IGR39_SKIN	1	1	0.0339	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	VIM--LDHA	3	0	VIM	2134	chr10:17271391:+	LDHA	12434	chr11:18416164:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx&tcga_normals:1/3694=0.03%,VIM->chr10:17270258-17279592:+,vimentin,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	IGR39_SKIN	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000550
IGR39_SKIN	VIM--RPS28	3	0	VIM	2106	chr10:17271363:+	RPS28	12544	chr19:8386381:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	IGR39_SKIN	1	1	0.0339	TRUE	0	0	0	4	0	TRUE	ACH-000550
IGR39_SKIN	EPB41L2--PTPRK	2	0	EPB41L2	1168	chr6:131384295:-	PTPRK	58624	chr6:128411137:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	EPB41L2->chr6:131160487-131384462:-,erythrocyte_membrane_protein_band_4.1_like_2,PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K	IGR39_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000550
IGR39_SKIN	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	IGR39_SKIN	1	1	0.0226	TRUE	0	0	0	11	0	TRUE	ACH-000550
IGR39_SKIN	MRPS35--SPECC1	2	0	MRPS35	1183	chr12:27863888:+	SPECC1	32930	chr17:20140173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35,SPECC1->Oncogene{Bushman},chr17:19912657-20222339:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1	IGR39_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000550
IGR39_SKIN	SLC16A7--ZNF567	2	0	SLC16A7	1170	chr12:59990017:+	ZNF567	31650	chr19:37203288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7,ZNF567->chr19:37178514-37218603:+,zinc_finger_protein_567	IGR39_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000550
IGR39_SKIN	TBL1X--WWC3	2	0	TBL1X	3678	chrX:9469889:+	WWC3	35204	chrX:10058811:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	TBL1X->chrX:9431335-9687780:+,transducin_(beta)-like_1X-linked,WWC3->WWC_family_member_3,chrX:9983602-10112518:+	IGR39_SKIN	1	1	0.0226	TRUE	0	1	0	1	1	TRUE	ACH-000550
IGR39_SKIN	USPL1--SLC7A1	2	0	USPL1	1364	chr13:31192193:+	SLC7A1	17770	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	USPL1->chr13:31191830-31233686:+,ubiquitin_specific_peptidase_like_1,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	IGR39_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000550
IGR39_SKIN	FAM101A--RP11-114H23.1	1	1	FAM101A	6449	chr12:124780182:+	RP11-114H23.1	19448	chr12:76025094:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0113	0.0113	FAM101A->chr12:124457788-124800570:+,family_with_sequence_similarity_101_member_A,RP11-114H23.1->chr12:75956982-76377795:-	IGR39_SKIN	0.4	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000550
RERFLCKJ_LUNG	PTOV1--CPT1C	90	41	PTOV1	5860	chr19:50359560:+	CPT1C	28268	chr19:50216814:+	INCL_NON_REF_SPLICE	YES	229	0	0.36	1	0.7794	0.355	PTOV1->chr19:50353992-50364001:+,prostate_tumor_overexpressed_1,CPT1C->carnitine_palmitoyltransferase_1C,chr19:50194155-50216988:+	RERFLCKJ_LUNG	0.36	1	1.1344	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	RP11-479O16.1--MSMO1	24	0	RP11-479O16.1	5346	chr5:58037747:-	MSMO1	15454	chr4:166263475:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2078	0	RP11-479O16.1->chr5:58037408-58112926:-,MSMO1->chr4:166248775-166264312:+,methylsterol_monooxygenase_1	RERFLCKJ_LUNG	1	1	0.2078	TRUE	0	0	0	5	0	TRUE	ACH-000482
RERFLCKJ_LUNG	ZRANB2-AS2--DPYD	20	9	ZRANB2-AS2	11729	chr1:71702878:+	DPYD	55600	chr1:97915779:-	ONLY_REF_SPLICE	YES	11	16	0.72	0.64	0.1732	0.0779	ZRANB2-AS2->ZRANB2_antisense_RNA_2_(head_to_head),chr1:71547007-71955652:+,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	RERFLCKJ_LUNG	0.64	0.72	0.2511	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	PTOV1--CPT1C	21	4	PTOV1	4634	chr19:50358334:+	CPT1C	28330	chr19:50216876:+	INCL_NON_REF_SPLICE	YES	266	0	0.09	1	0.1818	0.0346	PTOV1->chr19:50353992-50364001:+,prostate_tumor_overexpressed_1,CPT1C->carnitine_palmitoyltransferase_1C,chr19:50194155-50216988:+	RERFLCKJ_LUNG	0.09	1	0.2164	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	PTOV1--CPT1C	12	4	PTOV1	4634	chr19:50358334:+	CPT1C	28327	chr19:50216873:+	ONLY_REF_SPLICE	YES	266	0	0.06	1	0.1039	0.0346	PTOV1->chr19:50353992-50364001:+,prostate_tumor_overexpressed_1,CPT1C->carnitine_palmitoyltransferase_1C,chr19:50194155-50216988:+	RERFLCKJ_LUNG	0.06	1	0.1385	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	LY6E--S100A6	5	0	LY6E	4687	chr8:144103227:+	S100A6	9963	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	RERFLCKJ_LUNG	1	1	0.0433	TRUE	0	0	0	7	0	TRUE	ACH-000482
RERFLCKJ_LUNG	ZRANB2-AS2--DPYD	3	8	ZRANB2-AS2	10663	chr1:71688797:+	DPYD	55600	chr1:97915779:-	ONLY_REF_SPLICE	YES	8	16	0.58	0.41	0.026	0.0693	ZRANB2-AS2->ZRANB2_antisense_RNA_2_(head_to_head),chr1:71547007-71955652:+,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	RERFLCKJ_LUNG	0.41	0.58	0.0953	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	BRD9--RP11-43F13.4	4	3	BRD9	10325	chr5:881986:-	RP11-43F13.4	27565	chr5:1005737:+	INCL_NON_REF_SPLICE	YES	161	4	0.04	0.64	0.0346	0.026	BRD9->bromodomain_containing_9,chr5:850406-892939:-,RP11-43F13.4->chr5:1005154-1006738:+	RERFLCKJ_LUNG	0.04	0.64	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	BCAS3--APPBP2	2	2	BCAS3	7454	chr17:58786686:+	APPBP2	60955	chr17:58577848:-	ONLY_REF_SPLICE	YES	13	54	0.24	0.07	0.0173	0.0173	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-	RERFLCKJ_LUNG	0.07	0.24	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	NMT1--MRPS15	2	0	NMT1	2262	chr17:43138828:+	MRPS15	27608	chr1:36923582:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+,MRPS15->chr1:36921319-36930038:-,mitochondrial_ribosomal_protein_S15	RERFLCKJ_LUNG	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	ZRANB2-AS2--DPYD	1	2	ZRANB2-AS2	2131	chr1:71557387:+	DPYD	55600	chr1:97915779:-	ONLY_REF_SPLICE	NO	0	16	1	0.16	0.0087	0.0173	ZRANB2-AS2->ZRANB2_antisense_RNA_2_(head_to_head),chr1:71547007-71955652:+,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	RERFLCKJ_LUNG	0.16	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000482
COV434_OVARY	RAP1B--AC068535.4	13	0	RAP1B	15072	chr12:69053773:+	AC068535.4	19991	chr2:105121504:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1367	0	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,AC068535.4->chr2:105104916-105126967:-	COV434_OVARY	1	1	0.1367	TRUE	0	0	0	4	0	TRUE	ACH-000123
COV434_OVARY	PTMS--CRYAB	5	0	PTMS	4869	chr12:6879852:+	CRYAB	11266	chr11:111782461:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	PTMS->chr12:6874682-6880116:+,parathymosin,CRYAB->Oncogene{Bushman},chr11:111779289-111794446:-,crystallin_alpha_B	COV434_OVARY	1	1	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	AC018816.3--BHLHE40-AS1	4	0	AC018816.3	4695	chr3:4872631:-	BHLHE40-AS1	16348	chr3:4942382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:-:[9516],AC018816.3->chr3:4855978-4928977:-,BHLHE40-AS1->BHLHE40_antisense_RNA_1,chr3:4938493-5021646:-	COV434_OVARY	1	1	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	CASC10--DNM3OS	3	0	CASC10	1513	chr10:21785679:-	DNM3OS	8963	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	CASC10->cancer_susceptibility_candidate_10,chr10:21781587-21786191:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	COV434_OVARY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	LDB1--TPM2	3	0	LDB1	7405	chr10:103867798:-	TPM2	12084	chr9:35689820:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LDB1->LIM_domain_binding_1,Oncogene{Bushman},chr10:103867317-103880210:-,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	COV434_OVARY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	RP11-275N1.1--NEBL	1	8	RP11-275N1.1	3264	chr10:21657426:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	9	84	0.5	0.1	0.0105	0.0841	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	COV434_OVARY	0.1	0.5	0.0946	TRUE	0	0	0	3	0	TRUE	ACH-000123
COV434_OVARY	AC018816.3--BHLHE40-AS1	2	0	AC018816.3	3251	chr3:4898320:-	BHLHE40-AS1	16348	chr3:4942382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	LOCAL_REARRANGEMENT:-:[9516],AC018816.3->chr3:4855978-4928977:-,BHLHE40-AS1->BHLHE40_antisense_RNA_1,chr3:4938493-5021646:-	COV434_OVARY	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	C8orf59--BLMH	2	0	C8orf59	4036	chr8:86129615:-	BLMH	17424	chr17:28599917:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	C8orf59->chr8:86126311-86132650:-,chromosome_8_open_reading_frame_59,BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-	COV434_OVARY	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	CXXC5--HAS3	2	0	CXXC5	2711	chr5:139028594:+	HAS3	18242	chr16:69143299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	CXXC5->CXXC_finger_protein_5,chr5:139026884-139063467:+,HAS3->chr16:69139467-69152622:+,hyaluronan_synthase_3	COV434_OVARY	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	ERC1--WNK1	2	0	ERC1	3448	chr12:1107648:+	WNK1	62275	chr12:987381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},LOCAL_REARRANGEMENT:+:[79057],ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+	COV434_OVARY	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	TBL1XR1--ARHGEF26	2	0	TBL1XR1	1353	chr3:176914909:-	ARHGEF26	38497	chr3:153867178:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,ARHGEF26->Rho_guanine_nucleotide_exchange_factor_26,chr3:153838792-153975616:+	COV434_OVARY	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000123
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNIP1--RP11-876N24.4	109	30	TNIP1	9514	chr5:150441688:-	RP11-876N24.4	29633	chr16:11035043:+	ONLY_REF_SPLICE	YES	217	6	0.39	0.96	1.1561	0.3182	TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-,RP11-876N24.4->chr16:11034576-11036878:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.96	1.4743	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARID4B--BCL6	47	22	ARID4B	2306	chr1:235490229:-	BCL6	59056	chr3:187440389:-	ONLY_REF_SPLICE	YES	0	327	1	0.17	0.4985	0.2333	{Klijn_CCL:Lymphoid=1},ARID4B->AT-rich_interaction_domain_4B,chr1:235294949-235491534:-,BCL6->B-cell_CLL/lymphoma_6,Oncogene{Bushman},chr3:187439165-187463515:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.7318	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--EBF1	25	4	CIITA	19822	chr16:11017182:+	EBF1	38727	chr5:158267118:-	ONLY_REF_SPLICE	YES	17	24	0.63	0.55	0.2652	0.0424	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.63	0.3076	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RERE--GNB1	4	5	RERE	2669	chr1:8852463:-	GNB1	43064	chr1:1770677:-	ONLY_REF_SPLICE	YES	4	4	0.69	0.69	0.0424	0.053	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.69	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RERE--GNB1	3	5	RERE	1484	chr1:8877219:-	GNB1	43064	chr1:1770677:-	ONLY_REF_SPLICE	YES	3	4	0.73	0.67	0.0318	0.053	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.73	0.0848	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP79--CTC-523E23.11	4	0	RPL23AP79	2311	chr19:59086955:+	CTC-523E23.11	17629	chr19:35340453:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0424	0	RPL23AP79->chr19:59084870-59111168:+,ribosomal_protein_L23a_pseudogene_79,CTC-523E23.11->chr19:35340182-35351480:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASH1L--ARHGEF18	3	0	ASH1L	3174	chr1:155490891:-	ARHGEF18	41355	chr19:7505230:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,ARHGEF18->Rho/Rac_guanine_nucleotide_exchange_factor_18,chr19:7459999-7537363:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCKDHB--RP11-321N4.5	3	0	BCKDHB	13350	chr6:80982938:+	RP11-321N4.5	26885	chr6:86267778:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	BCKDHB->branched_chain_keto_acid_dehydrogenase_E1,_beta_polypeptide,chr6:80816364-81055987:+,RP11-321N4.5->chr6:86267696-86324952:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CREB1--TLK1	3	0	CREB1	1398	chr2:208394858:+	TLK1	37976	chr2:171917666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	CREB1->Oncogene{Bushman},cAMP_responsive_element_binding_protein_1,chr2:208394461-208468155:+,TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO3--CLK2	3	0	FBXO3	1122	chr11:33795968:-	CLK2	32075	chr1:155238226:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	FBXO3->F-box_protein_3,chr11:33762485-33796089:-,CLK2->CDC_like_kinase_2,chr1:155232659-155248282:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GYPC--EEF1A1	3	0	GYPC	7407	chr2:127447866:+	EEF1A1	17719	chr6:74228493:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	GYPC->chr2:127413509-127454246:+,glycophorin_C_(Gerbich_blood_group),EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	3	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RERE--GNB1	1	8	RERE	5242	chr1:8763114:-	GNB1	43064	chr1:1770677:-	ONLY_REF_SPLICE	NO	4	4	0.69	0.69	0.0106	0.0848	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.69	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC15A3--FAM167A	3	0	SLC15A3	11398	chr11:60705389:-	FAM167A	24433	chr8:11280022:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	SLC15A3->chr11:60704556-60720002:-,solute_carrier_family_15_member_3,FAM167A->chr8:11278972-11332224:-,family_with_sequence_similarity_167_member_A	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	APBB1IP--PIP4K2A	2	0	APBB1IP	1651	chr10:26727782:+	PIP4K2A	31339	chr10:22862386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	APBB1IP->amyloid_beta_precursor_protein_binding_family_B_member_1_interacting_protein,chr10:26727132-26856732:+,PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CXCR4--VPS35	2	0	CXCR4	1120	chr2:136875616:-	VPS35	9739	chr16:46717518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	CXCR4->C-X-C_motif_chemokine_receptor_4,chr2:136871919-136875735:-,VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--ABR	2	0	DANCR	1530	chr4:53579126:+	ABR	38176	chr17:916404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDDC2--EYA3	2	0	HDDC2	6312	chr6:125613987:-	EYA3	30248	chr1:28330930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	HDDC2->HD_domain_containing_2,chr6:125541108-125623282:-,EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIF1A--EIF3H	2	0	HIF1A	1327	chr14:62162557:+	EIF3H	36985	chr8:117658842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPH1--NADK2	2	0	HSPH1	4993	chr13:31728770:-	NADK2	34293	chr5:36200382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	HSPH1->Oncogene{Bushman},chr13:31710762-31736525:-,heat_shock_protein_family_H_(Hsp110)_member_1,NADK2->NAD_kinase_2,_mitochondrial,chr5:36192694-36242381:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IFNGR2--ATP5C1	2	0	IFNGR2	5800	chr21:34793992:+	ATP5C1	22548	chr10:7848937:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1),ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHDC4--ZCCHC14	2	0	KLHDC4	14017	chr16:87764158:-	ZCCHC14	43247	chr16:87446801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	KLHDC4->chr16:87730091-87799598:-,kelch_domain_containing_4,ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBNL1--SMYD3	2	0	MBNL1	3666	chr3:151986881:+	SMYD3	33034	chr1:246498776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NACC1--ELAVL1	2	0	NACC1	1352	chr19:13229268:+	ELAVL1	14800	chr19:8046070:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NACC1->chr19:13228917-13251955:+,nucleus_accumbens_associated_1,ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NEMF--PTCD3	2	0	NEMF	27383	chr14:50262509:-	PTCD3	49829	chr2:86354284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NHP2L1--RANBP1	2	0	NHP2L1	2186	chr22:42084798:-	RANBP1	16496	chr22:20109787:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NHP2L1->chr22:42069934-42086508:-,RANBP1->RAN_binding_protein_1,chr22:20103461-20114878:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIP4K2A--OPA1	2	0	PIP4K2A	8276	chr10:22898549:-	OPA1	36050	chr3:193354984:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,OPA1->OPA1,_mitochondrial_dynamin_like_GTPase,chr3:193310933-193415612:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXNB2--FDFT1	2	0	PLXNB2	3251	chr22:50733148:-	FDFT1	27755	chr8:11666303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	PLXNB2->chr22:50713408-50746056:-,plexin_B2,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--RC3H1	2	0	RABGAP1L	34158	chr1:174843644:+	RC3H1	55771	chr1:173962273:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,RC3H1->chr1:173900352-173991435:-,ring_finger_and_CCCH-type_domains_1	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGGTB--PHF15	2	0	RABGGTB	2411	chr1:76253289:+	PHF15	26056	chr5:133901806:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RABGGTB->Oncogene{Bushman},Rab_geranylgeranyltransferase_beta_subunit,chr1:76251879-76260764:+,PHF15->chr5:133860003-133918918:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF34--RPL17	2	0	RNF34	1178	chr12:121838021:+	RPL17	17770	chr18:47017954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RNF34->chr12:121837844-121868389:+,ring_finger_protein_34,RPL17->chr18:47014851-47018906:-,ribosomal_protein_L17	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP79--CTC-523E23.11	2	0	RPL23AP79	2311	chr19:59086955:+	CTC-523E23.11	16462	chr19:35341698:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RPL23AP79->chr19:59084870-59111168:+,ribosomal_protein_L23a_pseudogene_79,CTC-523E23.11->chr19:35340182-35351480:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX10--POLR2J2	2	0	SNX10	1166	chr7:26331706:+	POLR2J2	19570	chr7:102306610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	SNX10->chr7:26331541-26413949:+,sorting_nexin_10,POLR2J2->chr7:102277474-102312076:-,chr7:102277496-102312088:-,polymerase_(RNA)_II_subunit_J2	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP2--BDP1	2	0	SSBP2	5324	chr5:80932376:-	BDP1	42065	chr5:70779669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,BDP1->B_double_prime_1,_subunit_of_RNA_polymerase_III_transcription_initiation_factor_IIIB,chr5:70751442-70863649:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUZ12--SUPT16H	2	0	SUZ12	2704	chr17:30267505:+	SUPT16H	35928	chr14:21829372:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	SUZ12->Oncogene{Bushman},SUZ12_polycomb_repressive_complex_2_subunit,chr17:30264037-30328064:+,SUPT16H->SPT16_homolog,_facilitates_chromatin_remodeling_subunit,chr14:21819631-21852425:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THOP1--PPAP2C	2	0	THOP1	6952	chr19:2799789:+	PPAP2C	21652	chr19:288171:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	THOP1->chr19:2785458-2813599:+,thimet_oligopeptidase_1,PPAP2C->chr19:281040-291393:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR91--MXD1	2	0	WDR91	5911	chr7:134890680:-	MXD1	23355	chr2:70130313:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	WDR91->WD_repeat_domain_91,chr7:134868590-134896316:-,MXD1->MAX_dimerization_protein_1,Oncogene{Bushman},chr2:70124820-70170077:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDYHV1--PVT1	2	0	WDYHV1	1132	chr8:124429096:+	PVT1	33672	chr8:129082406:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	WDYHV1->WDYHV_motif_containing_1,chr8:124428965-124479470:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAS1--CCM2	2	0	ZFAS1	3511	chr20:47897501:+	CCM2	13320	chr7:45077852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,CCM2->CCM2_scaffolding_protein,chr7:45039074-45116068:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--SRSF5	2	0	ZNF738	7035	chr19:21558766:+	SRSF5	19019	chr14:70237184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX29--PKD1	1	1	SNX29	12818	chr16:12146079:+	PKD1	42689	chr16:2169379:-	ONLY_REF_SPLICE	YES	26	2	0.07	0.5	0.0106	0.0106	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,PKD1->chr16:2138711-2185899:-,polycystin_1,_transient_receptor_potential_channel_interacting	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.5	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
HS863T_FIBROBLAST	TMSB10--TMSB4X	6	0	TMSB10	1438	chr2:85133186:+	TMSB4X	6247	chrX:12994426:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0745	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS863T_FIBROBLAST	1	1	0.0745	TRUE	0	1	0	17	1	TRUE	ACH-000119
HS863T_FIBROBLAST	PIGX--TG	4	0	PIGX	3799	chr3:196439805:+	TG	18778	chr8:133879271:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	PIGX->chr3:196366646-196462878:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_X,TG->chr8:133879203-134147147:+,thyroglobulin	HS863T_FIBROBLAST	1	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000119
HS863T_FIBROBLAST	ASCC3--SLC30A9	2	0	ASCC3	42277	chr6:100988039:-	SLC30A9	64081	chr4:42067327:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	ASCC3->activating_signal_cointegrator_1_complex_subunit_3,chr6:100956070-101329248:-,SLC30A9->chr4:41992489-42092474:+,solute_carrier_family_30_member_9	HS863T_FIBROBLAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000119
HS863T_FIBROBLAST	DNAJC17--SUMF2	2	0	DNAJC17	1109	chr15:41099567:-	SUMF2	15848	chr7:56140690:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	DNAJC17->DnaJ_heat_shock_protein_family_(Hsp40)_member_C17,chr15:41060067-41099675:-,SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2	HS863T_FIBROBLAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000119
HS863T_FIBROBLAST	PLS3--OXCT1	2	0	PLS3	6438	chrX:114856721:+	OXCT1	29412	chr5:41850281:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	PLS3->chrX:114795501-114885181:+,plastin_3,OXCT1->3-oxoacid_CoA-transferase_1,chr5:41730167-41870621:-	HS863T_FIBROBLAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000119
HS863T_FIBROBLAST	RP11-449H11.1--FAM195B	2	0	RP11-449H11.1	1160	chr16:25122717:-	FAM195B	11902	chr17:79782430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	RP11-449H11.1->chr16:25096913-25122876:-,FAM195B->chr17:79780287-79791178:-	HS863T_FIBROBLAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000119
HS863T_FIBROBLAST	SEMA3C--GNAI1	2	0	SEMA3C	4287	chr7:80545995:-	GNAI1	39138	chr7:79818267:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},SEMA3C->chr7:80371854-80551675:-,semaphorin_3C,GNAI1->G_protein_subunit_alpha_i1,chr7:79763271-79848718:+	HS863T_FIBROBLAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000119
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A1--MTUS2	40	11	SLC7A1	1273	chr13:30169553:-	MTUS2	42343	chr13:30075234:+	ONLY_REF_SPLICE	YES	3	0	0.94	1	0.4714	0.1296	LOCAL_INVERSION:-:+:[5655],SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1,MTUS2->chr13:29598748-30077892:+,microtubule_associated_tumor_suppressor_candidate_2	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.601	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP11A--CTD-2213F21.2	34	2	ATP11A	1127	chr13:113344769:+	CTD-2213F21.2	50716	chr14:31914850:+	ONLY_REF_SPLICE	YES	6	0	0.86	1	0.4007	0.0236	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,CTD-2213F21.2->chr14:31889492-31922089:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.4243	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UCK2--RP11-284J1.1	17	4	UCK2	1402	chr1:165797169:+	RP11-284J1.1	22947	chr6:775630:-	INCL_NON_REF_SPLICE	YES	40	69	0.34	0.23	0.2003	0.0471	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,RP11-284J1.1->chr6:774747-780214:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.34	0.2474	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUDT3--NLGN1	15	10	NUDT3	1411	chr6:34360041:-	NLGN1	32712	chr3:173993105:+	ONLY_REF_SPLICE	YES	66	0	0.27	1	0.1768	0.1178	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,NLGN1->chr3:173114074-174004434:+,neuroligin_1	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.2946	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP11A--NUBPL	14	5	ATP11A	1127	chr13:113344769:+	NUBPL	47903	chr14:31995258:+	ONLY_REF_SPLICE	YES	6	0	0.76	1	0.165	0.0589	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.2239	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIB1--RP11-739N10.1	10	15	MIB1	13123	chr18:19383975:+	RP11-739N10.1	41740	chr18:24972831:-	ONLY_REF_SPLICE	YES	123	0	0.17	1	0.1178	0.1768	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,RP11-739N10.1->chr18:24916343-25175128:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.2946	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	4	35	AP003900.6	1122	chr21:11169841:+	AC011718.2	10100	chr22:20656924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0.4124	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4595	TRUE	0	0	0	11	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIB1--RP11-739N10.1	10	7	MIB1	13123	chr18:19383975:+	RP11-739N10.1	47656	chr18:24917151:-	ONLY_REF_SPLICE	YES	123	7	0.12	0.71	0.1178	0.0825	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,RP11-739N10.1->chr18:24916343-25175128:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.71	0.2003	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UCK2--RP11-284J1.1	5	25	UCK2	1402	chr1:165797169:+	RP11-284J1.1	21608	chr6:776969:-	ONLY_REF_SPLICE	YES	40	3	0.43	0.91	0.0589	0.2946	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,RP11-284J1.1->chr6:774747-780214:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.91	0.3535	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIB1--RP11-739N10.1	2	10	MIB1	13123	chr18:19383975:+	RP11-739N10.1	46560	chr18:24918666:-	ONLY_REF_SPLICE	YES	123	3	0.09	0.8	0.0236	0.1178	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,RP11-739N10.1->chr18:24916343-25175128:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.8	0.1414	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIB1--RP11-739N10.1	1	11	MIB1	13123	chr18:19383975:+	RP11-739N10.1	42824	chr18:24954211:-	ONLY_REF_SPLICE	YES	123	0	0.09	1	0.0118	0.1296	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,RP11-739N10.1->chr18:24916343-25175128:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.1414	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBL1X--C5orf30	3	0	TBL1X	1168	chrX:9431502:+	C5orf30	30673	chr5:102601609:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	TBL1X->chrX:9431335-9687780:+,transducin_(beta)-like_1X-linked,C5orf30->chr5:102594403-102614361:+,chromosome_5_open_reading_frame_30	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B3GNT4--AMY2B	2	0	B3GNT4	1259	chr12:122688348:+	AMY2B	17831	chr1:104114179:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	B3GNT4->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_4,chr12:122688090-122693499:+,AMY2B->amylase,_alpha_2B_(pancreatic),chr1:104096437-104122156:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COG3--VWA8	2	0	COG3	8758	chr13:46057490:+	VWA8	40007	chr13:42442613:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	COG3->chr13:46039060-46110765:+,component_of_oligomeric_golgi_complex_3,VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYNC1I2--HAT1	2	0	DYNC1I2	4477	chr2:172549404:+	HAT1	25382	chr2:172803228:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DYNC1I2->chr2:172543919-172604930:+,dynein_cytoplasmic_1_intermediate_chain_2,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNDC3A--ITM2B	2	0	FNDC3A	2006	chr13:49551053:+	ITM2B	36852	chr13:48827944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Pancreas=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Whole_Blood=1},FNDC3A->chr13:49550048-49783915:+,fibronectin_type_III_domain_containing_3A,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRBP1--ARSG	2	0	NRBP1	1942	chr2:27651598:+	ARSG	19497	chr17:66303084:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NRBP1->chr2:27650657-27665126:+,nuclear_receptor_binding_protein_1,ARSG->arylsulfatase_G,chr17:66255323-66418872:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCNP--NBEAP1	2	0	PCNP	1185	chr3:101293123:+	NBEAP1	13973	chr15:20876597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	PCNP->PEST_proteolytic_signal_containing_nuclear_protein,chr3:101292939-101313281:+,NBEAP1->Oncogene{Bushman},chr15:20862967-20893737:-,neurobeachin_pseudogene_1	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTC3--ARL6IP6	2	0	TTC3	1139	chr21:38445664:+	ARL6IP6	68869	chr2:153577047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,ARL6IP6->ADP_ribosylation_factor_like_GTPase_6_interacting_protein_6,chr2:153574407-153617767:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF398--WHSC1L1	2	0	ZNF398	1240	chr7:148823747:+	WHSC1L1	25041	chr8:38196125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF398->chr7:148823508-148880116:+,zinc_finger_protein_398,WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC005932.1--CSNK1G2	1	1	AC005932.1	1303	chr19:19051433:+	CSNK1G2	12783	chr19:1969507:+	ONLY_REF_SPLICE	NO	48	4	0.04	0.33	0.0118	0.0118	AC005932.1->chr19:19051131-19057640:+,CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.33	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
HT1376_URINARY_TRACT	TCF12--ZNF826P	24	11	TCF12	3439	chr15:57213296:+	ZNF826P	59946	chr19:20451910:-	ONLY_REF_SPLICE	YES	46	0	0.43	1	0.2687	0.1231	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,ZNF826P->chr19:20451078-20607775:-,zinc_finger_protein_826,_pseudogene	HT1376_URINARY_TRACT	0.43	1	0.3918	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	USP7--MBOAT1	22	4	USP7	8404	chr16:9024150:-	MBOAT1	37975	chr6:20153000:-	ONLY_REF_SPLICE	YES	103	171	0.2	0.13	0.2463	0.0448	USP7->Oncogene{Bushman},chr16:8985951-9058371:-,ubiquitin_specific_peptidase_7_(herpes_virus-associated),MBOAT1->chr6:20100935-20212670:-,membrane_bound_O-acyltransferase_domain_containing_1	HT1376_URINARY_TRACT	0.13	0.2	0.2911	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	ARID2--MACC1	19	12	ARID2	2571	chr12:46125097:+	MACC1	36360	chr7:20210401:-	ONLY_REF_SPLICE	YES	14	2	0.69	0.94	0.2127	0.1343	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,MACC1->chr7:20174278-20257027:-,metastasis_associated_in_colon_cancer_1	HT1376_URINARY_TRACT	0.69	0.94	0.347	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	AC003665.1--CDK5RAP3	18	0	AC003665.1	1075	chr17:46018702:-	CDK5RAP3	11193	chr17:46048728:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2015	0	LOCAL_INVERSION:-:+:[26400],AC003665.1->chr17:45974696-46018776:-,CDK5RAP3->CDK5_regulatory_subunit_associated_protein_3,chr17:46045176-46059140:+	HT1376_URINARY_TRACT	1	1	0.2015	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	SCYL1--FRMD8	15	12	SCYL1	8867	chr11:65303805:+	FRMD8	17069	chr11:65161044:+	ONLY_REF_SPLICE	YES	142	104	0.16	0.21	0.1679	0.1343	SCYL1->Oncogene{Bushman},SCY1_like_pseudokinase_1,chr11:65292548-65306175:+,FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	HT1376_URINARY_TRACT	0.16	0.21	0.3022	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	ARID2--MACC1	8	14	ARID2	2571	chr12:46125097:+	MACC1	34121	chr7:20238293:-	ONLY_REF_SPLICE	YES	14	0	0.61	1	0.0896	0.1567	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,MACC1->chr7:20174278-20257027:-,metastasis_associated_in_colon_cancer_1	HT1376_URINARY_TRACT	0.61	1	0.2463	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	ARID2--MACC1	8	9	ARID2	2571	chr12:46125097:+	MACC1	39055	chr7:20201493:-	ONLY_REF_SPLICE	YES	14	10	0.55	0.63	0.0896	0.1007	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,MACC1->chr7:20174278-20257027:-,metastasis_associated_in_colon_cancer_1	HT1376_URINARY_TRACT	0.55	0.63	0.1903	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	AC003665.1--CDK5RAP3	10	0	AC003665.1	1064	chr17:46018713:-	CDK5RAP3	11193	chr17:46048728:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1119	0	LOCAL_INVERSION:-:+:[26400],AC003665.1->chr17:45974696-46018776:-,CDK5RAP3->CDK5_regulatory_subunit_associated_protein_3,chr17:46045176-46059140:+	HT1376_URINARY_TRACT	1	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	ACOXL--ACVRL1	6	4	ACOXL	11562	chr2:111598982:+	ACVRL1	34146	chr12:52306254:+	ONLY_REF_SPLICE	YES	21	0	0.32	1	0.0672	0.0448	ACOXL->acyl-CoA_oxidase-like,chr2:111490150-111875799:+,ACVRL1->activin_A_receptor_like_type_1,chr12:52300692-52317145:+	HT1376_URINARY_TRACT	0.32	1	0.112	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	PCCA--SNX13	6	2	PCCA	16218	chr13:100925600:+	SNX13	60028	chr7:17874488:-	ONLY_REF_SPLICE	YES	16	59	0.33	0.12	0.0672	0.0224	PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit,SNX13->chr7:17830385-17980124:-,sorting_nexin_13	HT1376_URINARY_TRACT	0.12	0.33	0.0896	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	SUFU--RP11-18I14.10	6	2	SUFU	3620	chr10:104309863:+	RP11-18I14.10	27974	chr10:104215094:+	ONLY_REF_SPLICE	YES	6	35	0.57	0.19	0.0672	0.0224	LOCAL_REARRANGEMENT:+:[42881],SUFU->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SUFU_negative_regulator_of_hedgehog_signaling,chr10:104263744-104393292:+,RP11-18I14.10->chr10:104209574-104220863:+	HT1376_URINARY_TRACT	0.19	0.57	0.0896	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	AP003900.6--AC011718.2	2	4	AP003900.6	2187	chr21:11172043:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0224	0.0448	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	HT1376_URINARY_TRACT	0.86	1	0.0672	TRUE	0	0	0	5	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	ATP7B--RP11-141M1.3	2	2	ATP7B	11407	chr13:52531652:-	RP11-141M1.3	35371	chr13:34013861:-	ONLY_REF_SPLICE	YES	16	1	0.2	0.8	0.0224	0.0224	ATP7B->ATPase_copper_transporting_beta,chr13:52506809-52585630:-,RP11-141M1.3->chr13:33929343-34250905:-	HT1376_URINARY_TRACT	0.2	0.8	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	DTNBP1--HIVEP1	2	0	DTNBP1	7539	chr6:15615498:-	HIVEP1	22004	chr6:12015759:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1,HIVEP1->Oncogene{Bushman},chr6:12008995-12165232:+,human_immunodeficiency_virus_type_I_enhancer_binding_protein_1	HT1376_URINARY_TRACT	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	RNF40--ZNF883	2	0	RNF40	5814	chr16:30777879:+	ZNF883	20551	chr9:115761418:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	RNF40->chr16:30773066-30787628:+,ring_finger_protein_40,ZNF883->chr9:115759495-115774507:-,zinc_finger_protein_883	HT1376_URINARY_TRACT	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	RPL22--RILPL1	2	0	RPL22	8153	chr1:6252990:-	RILPL1	19939	chr12:123984083:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,RILPL1->Rab_interacting_lysosomal_protein-like_1,chr12:123955925-124018265:-	HT1376_URINARY_TRACT	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	TES--CAV1	2	0	TES	1242	chr7:115850788:+	CAV1	15491	chr7:116166579:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	{Klijn_CCL:Lung=1,Head-Neck=1},TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HT1376_URINARY_TRACT	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	ISPD--AC004540.5	1	1	ISPD	3684	chr7:16415717:-	AC004540.5	22490	chr7:26533415:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0112	0.0112	ISPD->chr7:16130817-16460947:-,isoprenoid_synthase_domain_containing,AC004540.5->chr7:26438213-26538594:+	HT1376_URINARY_TRACT	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	THSD4--SENP8	1	1	THSD4	7149	chr15:71549054:+	SENP8	41840	chr15:72431918:+	ONLY_REF_SPLICE	YES	35	2	0.05	0.5	0.0112	0.0112	THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,SENP8->SUMO/sentrin_peptidase_family_member,_NEDD8_specific,chr15:72406599-72433311:+	HT1376_URINARY_TRACT	0.05	0.5	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000724
JHH5_LIVER	EML1--SETD3	21	4	EML1	5093	chr14:100259880:+	SETD3	47955	chr14:99880271:-	ONLY_REF_SPLICE	YES	2	35	0.93	0.42	0.2881	0.0549	EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1,SETD3->SET_domain_containing_3,chr14:99864083-99947216:-	JHH5_LIVER	0.42	0.93	0.343	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	EML1--SETD3	9	0	EML1	5093	chr14:100259880:+	SETD3	53023	chr14:99872927:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1235	0	EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1,SETD3->SET_domain_containing_3,chr14:99864083-99947216:-	JHH5_LIVER	1	1	0.1235	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	NDUFS2--SPOP	7	0	NDUFS2	12356	chr1:161184063:+	SPOP	15646	chr17:47755429:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.096	0	NDUFS2->NADH:ubiquinone_oxidoreductase_core_subunit_S2,chr1:161166894-161184185:+,SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein	JHH5_LIVER	1	1	0.096	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	REPS1--ELMO1	5	1	REPS1	1732	chr6:139308667:-	ELMO1	57126	chr7:37136332:-	ONLY_REF_SPLICE	YES	9	3	0.4	0.67	0.0686	0.0137	{Klijn_CCL:Liver=1},REPS1->RALBP1_associated_Eps_domain_containing_1,chr6:139224630-139309398:-,ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1	JHH5_LIVER	0.4	0.67	0.0823	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	WHSC1L1--RP11-417J8.6	4	2	WHSC1L1	18969	chr8:38172165:-	RP11-417J8.6	58915	chr1:142623105:-	ONLY_REF_SPLICE	YES	11	1	0.35	0.86	0.0549	0.0274	WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-,RP11-417J8.6->chr1:142620645-142729967:-	JHH5_LIVER	0.35	0.86	0.0823	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	SETD3--EML1	4	1	SETD3	9427	chr14:99879288:-	EML1	30334	chr14:100317190:+	ONLY_REF_SPLICE	YES	30	3	0.14	0.62	0.0549	0.0137	SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1	JHH5_LIVER	0.14	0.62	0.0686	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	UTRN--HECW1	4	1	UTRN	55556	chr6:144898424:+	HECW1	100535	chr7:43400485:+	ONLY_REF_SPLICE	YES	39	6	0.11	0.45	0.0549	0.0137	UTRN->chr6:144606837-145174170:+,utrophin,HECW1->HECT,_C2_and_WW_domain_containing_E3_ubiquitin_protein_ligase_1,chr7:43152198-43605600:+	JHH5_LIVER	0.11	0.45	0.0686	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	GUSB--CCDC129	3	3	GUSB	9080	chr7:65432718:-	CCDC129	28830	chr7:31682296:+	ONLY_REF_SPLICE	YES	116	0	0.05	1	0.0412	0.0412	{Klijn_CCL:Liver=1},GUSB->chr7:65425671-65447301:-,glucuronidase_beta,CCDC129->chr7:31553704-31698334:+,coiled-coil_domain_containing_129	JHH5_LIVER	0.05	1	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	SETD3--EML1	3	2	SETD3	9427	chr14:99879288:-	EML1	29605	chr14:100316461:+	ONLY_REF_SPLICE	YES	30	3	0.14	0.62	0.0412	0.0274	SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1	JHH5_LIVER	0.14	0.62	0.0686	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	SETD3--EML1	3	0	SETD3	1152	chr14:99947065:-	EML1	30334	chr14:100317190:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0412	0	SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1	JHH5_LIVER	1	1	0.0412	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	ACBD6--AKIRIN1	2	0	ACBD6	4072	chr1:180461404:-	AKIRIN1	18562	chr1:39463843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,AKIRIN1->akirin_1,chr1:39456895-39471731:+	JHH5_LIVER	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	C17orf76-AS1--PTCD3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	JHH5_LIVER	1	1	0.0274	TRUE	0	3	0	8	0	TRUE	ACH-000734
JHH5_LIVER	DKC1--C20orf24	2	0	DKC1	1226	chrX:153991256:+	C20orf24	17299	chr20:35236118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	DKC1->Oncogene{Bushman},chrX:153991031-154005964:+,dyskerin_pseudouridine_synthase_1,C20orf24->chr20:35234137-35240960:+,chromosome_20_open_reading_frame_24	JHH5_LIVER	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	TNFRSF1A--KLHDC4	2	0	TNFRSF1A	1339	chr12:6450942:-	KLHDC4	26980	chr16:87748179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	TNFRSF1A->Oncogene{Bushman},chr12:6437923-6451280:-,tumor_necrosis_factor_receptor_superfamily_member_1A,KLHDC4->chr16:87730091-87799598:-,kelch_domain_containing_4	JHH5_LIVER	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000734
HCC2935_LUNG	SREBF2--RP5-1121H13.4	103	17	SREBF2	1254	chr22:42229362:+	RP5-1121H13.4	29390	chr20:40619786:+	INCL_NON_REF_SPLICE	YES	158	0	0.43	1	1.128	0.1862	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,RP5-1121H13.4->chr20:40619780-40692609:+	HCC2935_LUNG	0.43	1	1.3142	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	PTPRT--RP5-821D11.7	26	17	PTPRT	39987	chr20:40707892:-	RP5-821D11.7	50795	chr22:42229362:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.2847	0.1862	PTPRT->Oncogene{Bushman},chr20:40701392-41818610:-,protein_tyrosine_phosphatase,_receptor_type_T,RP5-821D11.7->chr22:42227219-42230669:-	HCC2935_LUNG	0.98	1	0.4709	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	PTPRT--RP5-821D11.7	19	20	PTPRT	39990	chr20:40707889:-	RP5-821D11.7	50795	chr22:42229362:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2081	0.219	PTPRT->Oncogene{Bushman},chr20:40701392-41818610:-,protein_tyrosine_phosphatase,_receptor_type_T,RP5-821D11.7->chr22:42227219-42230669:-	HCC2935_LUNG	0.97	1	0.4271	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	LARGE--XPNPEP3	15	2	LARGE	15553	chr22:33960834:-	XPNPEP3	42974	chr22:41265003:+	ONLY_REF_SPLICE	YES	18	53	0.49	0.24	0.1643	0.0219	{Klijn_CCL:Lung=1},LARGE->chr22:33558212-34318829:-,like-glycosyltransferase,XPNPEP3->X-prolyl_aminopeptidase_3,_mitochondrial,chr22:41253081-41363838:+	HCC2935_LUNG	0.24	0.49	0.1862	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	GGT1--RBFOX2	4	0	GGT1	13891	chr22:25019883:+	RBFOX2	27854	chr22:36177793:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0438	0	GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1,RBFOX2->RNA_binding_protein,_fox-1_homolog_2,chr22:36134783-36424473:-	HCC2935_LUNG	1	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	PTPRT--RP5-821D11.7	3	2	PTPRT	30578	chr20:40735441:-	RP5-821D11.7	50795	chr22:42229362:-	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0329	0.0219	PTPRT->Oncogene{Bushman},chr20:40701392-41818610:-,protein_tyrosine_phosphatase,_receptor_type_T,RP5-821D11.7->chr22:42227219-42230669:-	HCC2935_LUNG	0.45	1	0.0548	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	CLDN12--ANKIB1	2	0	CLDN12	4834	chr7:90034922:+	ANKIB1	26635	chr7:91924203:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	CLDN12->chr7:90013035-90142716:+,claudin_12,ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	GGT1--RBFOX2	2	0	GGT1	13891	chr22:25019883:+	RBFOX2	27857	chr22:36177790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1,RBFOX2->RNA_binding_protein,_fox-1_homolog_2,chr22:36134783-36424473:-	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	MED6--SIPA1L1	2	0	MED6	8751	chr14:71051534:-	SIPA1L1	18524	chr14:71880665:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	MED6->chr14:71047974-71067384:-,mediator_complex_subunit_6,SIPA1L1->chr14:71787166-72207946:+,signal_induced_proliferation_associated_1_like_1	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	OSBPL1A--DPF2	2	0	OSBPL1A	5132	chr18:21946856:-	DPF2	46206	chr11:65111216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A,DPF2->chr11:65101225-65120720:+,double_PHD_fingers_2	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	PLA2G4A--C1orf27	2	0	PLA2G4A	2185	chr1:186823519:+	C1orf27	34249	chr1:186375215:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	PLA2G4A->Oncogene{Bushman},chr1:186798085-186958113:+,phospholipase_A2_group_IVA,C1orf27->chr1:186344890-186390510:+,chromosome_1_open_reading_frame_27	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	PRODH--PLXNB2	2	0	PRODH	3815	chr22:18918503:-	PLXNB2	22619	chr22:50733207:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	PRODH->chr22:18900294-18924066:-,proline_dehydrogenase_1,PLXNB2->chr22:50713408-50746056:-,plexin_B2	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	R3HDM1--DHRS9	2	0	R3HDM1	1179	chr2:136289203:+	DHRS9	48341	chr2:169948300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,DHRS9->chr2:169921299-169952677:+,dehydrogenase/reductase_(SDR_family)_member_9	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	TUBB6--DYNC1I2	2	0	TUBB6	3238	chr18:12311052:+	DYNC1I2	23446	chr2:172582128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	TUBB6->chr18:12307668-12344319:+,tubulin_beta_6_class_V,DYNC1I2->chr2:172543919-172604930:+,dynein_cytoplasmic_1_intermediate_chain_2	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	ZNF790--SMG9	2	0	ZNF790	1786	chr19:37340904:-	SMG9	14390	chr19:44254899:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	ZNF790->chr19:37308330-37341689:-,zinc_finger_protein_790,SMG9->SMG9_nonsense_mediated_mRNA_decay_factor,chr19:44235301-44259142:-	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC461_LUNG	PRKCA--RP11-38L15.8	124	69	PRKCA	4995	chr17:64492401:+	RP11-38L15.8	36837	chr10:46914251:-	ONLY_REF_SPLICE	YES	66	22	0.75	0.9	1.3251	0.7373	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,RP11-38L15.8->chr10:46914145-46917230:-	HCC461_LUNG	0.75	0.9	2.0624	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	HIF1A--PKP2	97	129	HIF1A	1327	chr14:62162557:+	PKP2	28791	chr12:33003907:-	ONLY_REF_SPLICE	YES	1402	135	0.14	0.63	1.0366	1.3785	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PKP2->chr12:32943679-33049774:-,plakophilin_2	HCC461_LUNG	0.14	0.63	2.4151	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	STX5--WDR74	73	11	STX5	1135	chr11:62599426:-	WDR74	13566	chr11:62607131:-	ONLY_REF_SPLICE	YES	24	63	0.78	0.57	0.7801	0.1175	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	HCC461_LUNG	0.57	0.78	0.8976	TRUE	0	4	0	2	4	TRUE	ACH-000339
HCC461_LUNG	RPS3--EPSTI1	28	13	RPS3	6383	chr11:75115912:+	EPSTI1	23903	chr13:43474519:-	ONLY_REF_SPLICE	YES	62	17	0.4	0.71	0.2992	0.1389	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,EPSTI1->chr13:43460524-43566407:-,epithelial_stromal_interaction_1_(breast)	HCC461_LUNG	0.4	0.71	0.4381	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	PRKCA--RP11-38L15.8	11	74	PRKCA	4995	chr17:64492401:+	RP11-38L15.8	36280	chr10:46914808:-	ONLY_REF_SPLICE	YES	66	0	0.56	1	0.1175	0.7908	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,RP11-38L15.8->chr10:46914145-46917230:-	HCC461_LUNG	0.56	1	0.9083	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	STX5--WDR74	19	13	STX5	1135	chr11:62599426:-	WDR74	13358	chr11:62607339:-	ONLY_REF_SPLICE	YES	24	12	0.57	0.73	0.203	0.1389	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	HCC461_LUNG	0.57	0.73	0.3419	TRUE	0	4	0	2	4	TRUE	ACH-000339
HCC461_LUNG	USP32--RP11-344E13.3	14	5	USP32	3790	chr17:58469243:-	RP11-344E13.3	48519	chr17:20795543:+	ONLY_REF_SPLICE	YES	21	0	0.47	1	0.1496	0.0534	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,RP11-344E13.3->chr17:20771746-20905589:+	HCC461_LUNG	0.47	1	0.203	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	PRKCA--RP11-38L15.8	3	34	PRKCA	2421	chr17:64302245:+	RP11-38L15.8	36837	chr10:46914251:-	ONLY_REF_SPLICE	NO	54	22	0.41	0.63	0.0321	0.3633	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,RP11-38L15.8->chr10:46914145-46917230:-	HCC461_LUNG	0.41	0.63	0.3954	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	PRKCA--RP11-38L15.8	1	39	PRKCA	2421	chr17:64302245:+	RP11-38L15.8	36280	chr10:46914808:-	ONLY_REF_SPLICE	NO	54	0	0.43	1	0.0107	0.4168	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,RP11-38L15.8->chr10:46914145-46917230:-	HCC461_LUNG	0.43	1	0.4275	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	STX5--WDR74	4	11	STX5	1135	chr11:62599426:-	WDR74	13519	chr11:62607178:-	ONLY_REF_SPLICE	YES	24	26	0.38	0.37	0.0427	0.1175	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	HCC461_LUNG	0.37	0.38	0.1602	TRUE	0	4	0	2	4	TRUE	ACH-000339
HCC461_LUNG	RPS3--EPSTI1	3	14	RPS3	7208	chr11:75116737:+	EPSTI1	23903	chr13:43474519:-	INCL_NON_REF_SPLICE	YES	44	17	0.28	0.5	0.0321	0.1496	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,EPSTI1->chr13:43460524-43566407:-,epithelial_stromal_interaction_1_(breast)	HCC461_LUNG	0.28	0.5	0.1817	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	STX5--WDR74	3	13	STX5	2070	chr11:62598491:-	WDR74	13566	chr11:62607131:-	ONLY_REF_SPLICE	YES	81	63	0.16	0.2	0.0321	0.1389	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	HCC461_LUNG	0.16	0.2	0.171	TRUE	0	4	0	2	4	TRUE	ACH-000339
HCC461_LUNG	KDM3B--CTNNA1	6	0	KDM3B	1392	chr5:137688676:+	CTNNA1	56407	chr5:138221901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0	KDM3B->chr5:137688285-137772717:+,lysine_demethylase_3B,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	HCC461_LUNG	1	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	STX5--WDR74	1	16	STX5	2070	chr11:62598491:-	WDR74	13358	chr11:62607339:-	ONLY_REF_SPLICE	YES	81	12	0.17	0.59	0.0107	0.171	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	HCC461_LUNG	0.17	0.59	0.1817	TRUE	0	4	0	2	4	TRUE	ACH-000339
HCC461_LUNG	XRRA1--UVRAG	4	2	XRRA1	13732	chr11:74617284:-	UVRAG	33501	chr11:75562928:+	ONLY_REF_SPLICE	YES	15	5	0.29	0.55	0.0427	0.0214	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+	HCC461_LUNG	0.29	0.55	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	USP32--RP11-344E13.3	1	6	USP32	3790	chr17:58469243:-	RP11-344E13.3	47261	chr17:20790905:+	ONLY_REF_SPLICE	YES	21	0	0.25	1	0.0107	0.0641	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,RP11-344E13.3->chr17:20771746-20905589:+	HCC461_LUNG	0.25	1	0.0748	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	AGK--NDUFB2	2	0	AGK	2361	chr7:141255367:+	NDUFB2	34277	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_FI:{Esophagus=[count:1=pct:0.2],Thyroid=[count:1=pct:0.6]},{Klijn_CCL:Lung=1,Ovary=1},AGK->acylglycerol_kinase,chr7:141250989-141355044:+,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	HCC461_LUNG	1	1	0.0214	TRUE	1	5	0	3	1	TRUE	ACH-000339
HCC461_LUNG	CHST11--EFTUD2	2	0	CHST11	4052	chr12:104982721:+	EFTUD2	21399	chr17:42962702:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2	HCC461_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	DDX39A--SEPHS1	2	0	DDX39A	1111	chr19:14530082:-	SEPHS1	14560	chr10:13387028:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	DDX39A->DEAD-box_helicase_39A,chr19:14519631-14530192:-,SEPHS1->chr10:13359424-13390297:-,selenophosphate_synthetase_1	HCC461_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	KBTBD2--DPY19L1P1	2	0	KBTBD2	5562	chr7:32919047:-	DPY19L1P1	25907	chr7:32678977:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2,DPY19L1P1->DPY19L1_pseudogene_1,chr7:32620561-32801399:-	HCC461_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	MCF2L--CARS2	2	0	MCF2L	35052	chr13:113720484:+	CARS2	88227	chr13:111294868:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,CARS2->chr13:111293759-111365950:-,cysteinyl-tRNA_synthetase_2,_mitochondrial_(putative)	HCC461_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	RCC1--KAT6B	2	0	RCC1	2175	chr1:28834672:+	KAT6B	21567	chr10:76598441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B	HCC461_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	RPL30--LAPTM4B	2	0	RPL30	2527	chr8:99057171:-	LAPTM4B	17876	chr8:98863625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	HCC461_LUNG	1	1	0.0214	TRUE	0	1	0	5	0	TRUE	ACH-000339
HCC461_LUNG	SREK1--FUS	2	0	SREK1	4141	chr5:65449424:+	FUS	37137	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	HGNC_GENEFAM,SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	HCC461_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000339
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--ATP8A2	148	68	RUNX1	21108	chr21:36421139:-	ATP8A2	75364	chr13:26343184:+	ONLY_REF_SPLICE	YES	47	0	0.82	1	1.5161	0.6966	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	2.2127	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	117	42	KMT2A	18437	chr11:118355690:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	18	5	0.9	0.97	1.1986	0.4303	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.97	1.6289	TRUE	0	0	0	4	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	23	26	KMT2A	17776	chr11:118355029:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	21	5	0.7	0.91	0.2356	0.2663	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.91	0.5019	TRUE	0	0	0	4	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--HMGB1	15	0	RCC1	2175	chr1:28834672:+	HMGB1	23625	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1537	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1537	TRUE	0	6	0	3	4	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT3--KMT2A	2	3	MLLT3	6822	chr9:20413719:-	KMT2A	46023	chr11:118360507:+	ONLY_REF_SPLICE	YES	5	20	0.5	0.2	0.0205	0.0307	MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.5	0.0512	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTR3--TPRKB	2	0	ACTR3	4000	chr2:114674585:+	TPRKB	28149	chr2:73959412:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	ACTR3->ARP3_actin-related_protein_3_homolog_(yeast),chr2:114647537-114720173:+,TPRKB->TP53RK_binding_protein,chr2:73956231-73964527:-	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf142--WDR91	2	0	C14orf142	1265	chr14:93673175:-	WDR91	12098	chr7:134889185:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	C14orf142->chr14:93669239-93673439:-,chromosome_14_open_reading_frame_142,WDR91->WD_repeat_domain_91,chr7:134868590-134896316:-	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CARD8--CLASP2	2	0	CARD8	10756	chr19:48734034:-	CLASP2	63720	chr3:33633988:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-,CLASP2->chr3:33537737-33759848:-,cytoplasmic_linker_associated_protein_2	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBX5--TSPAN4	2	0	CBX5	1095	chr12:54673792:-	TSPAN4	24538	chr11:847201:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CBX5->chr12:54624724-54673886:-,chromobox_5,TSPAN4->chr11:842808-867116:+,tetraspanin_4	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--PVT1	2	0	CCDC26	1312	chr8:130692174:-	PVT1	30258	chr8:129082406:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF2H2C--HP1BP3	2	0	GTF2H2C	3602	chr5:68861015:+	HP1BP3	29499	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTF2H2C->GTF2H2_family_member_C,chr5:68856035-68890550:+,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUPL2--KLHL7	2	0	NUPL2	3987	chr7:23226765:+	KLHL7	23347	chr7:23191686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	LOCAL_REARRANGEMENT:+:[3913],NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,KLHL7->chr7:23145353-23217533:+,kelch_like_family_member_7	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--HMGB1	2	0	RCC1	1142	chr1:28832596:+	HMGB1	23625	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-387D10.2--CWC22	2	0	RP11-387D10.2	3420	chr15:91256398:-	CWC22	26710	chr2:180810442:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	RP11-387D10.2->chr15:91163239-91260372:-,CWC22->CWC22_homolog,_spliceosome-associated_protein,chr2:180809603-180871840:-	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WRN--UNC5D	1	1	WRN	18715	chr8:30958471:+	UNC5D	62396	chr8:35647877:+	ONLY_REF_SPLICE	YES	25	0	0.07	1	0.0102	0.0102	WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+,UNC5D->chr8:35092975-35654068:+,unc-5_netrin_receptor_D	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000006
BT20_BREAST	VOPP1--TYW1	231	105	VOPP1	17158	chr7:55559975:-	TYW1	36207	chr7:66532272:+	ONLY_REF_SPLICE	YES	552	117	0.38	0.74	1.9225	0.8739	VOPP1->chr7:55503749-55640681:-,vesicular,_overexpressed_in_cancer,_prosurvival_protein_1,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	BT20_BREAST	0.38	0.74	2.7964	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	PLEKHB2--ARHGEF4	193	57	PLEKHB2	5988	chr2:131878551:+	ARHGEF4	31017	chr2:131785518:+	ONLY_REF_SPLICE	YES	122	1	0.67	1	1.6063	0.4744	GTEx_v2:{count=1;pct=0.01%;dist=Pituitary=1},HGNC_GENEFAM,{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[57584],PLEKHB2->chr2:131862420-132111282:+,pleckstrin_homology_domain_containing_B2,ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+	BT20_BREAST	0.67	1	2.0807	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	CIZ1--LCN2	117	43	CIZ1	10518	chr9:130939845:-	LCN2	20804	chr9:130912517:+	ONLY_REF_SPLICE	YES	474	1009	0.25	0.14	0.9737	0.3579	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[12609],CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-,LCN2->chr9:130911350-130915734:+,lipocalin_2	BT20_BREAST	0.14	0.25	1.3316	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	PVT1--RP11-382A18.2	98	46	PVT1	1200	chr8:128806978:+	RP11-382A18.2	28456	chr8:128351523:+	INCL_NON_REF_SPLICE	YES	69	0	0.68	1	0.8156	0.3828	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-382A18.2->chr8:128351519-128404876:+	BT20_BREAST	0.68	1	1.1984	TRUE	0	5	0	1	5	TRUE	ACH-000536
BT20_BREAST	GOLGB1--ILDR1	82	52	GOLGB1	5721	chr3:121445760:-	ILDR1	39420	chr3:121713160:-	ONLY_REF_SPLICE	YES	49	0	0.73	1	0.6825	0.4328	GOLGB1->chr3:121382046-121468602:-,golgin_B1,ILDR1->chr3:121706170-121741051:-,immunoglobulin_like_domain_containing_receptor_1	BT20_BREAST	0.73	1	1.1153	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	RASSF3--TBK1	81	3	RASSF3	1231	chr12:65004523:+	TBK1	19891	chr12:64873792:+	ONLY_REF_SPLICE	YES	14	57	0.86	0.6	0.6741	0.025	RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+,TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+	BT20_BREAST	0.6	0.86	0.6991	TRUE	0	1	0	1	1	TRUE	ACH-000536
BT20_BREAST	GOLGB1--ILDR1	48	32	GOLGB1	5721	chr3:121445760:-	ILDR1	39763	chr3:121712817:-	ONLY_REF_SPLICE	YES	49	10	0.62	0.89	0.3995	0.2663	GOLGB1->chr3:121382046-121468602:-,golgin_B1,ILDR1->chr3:121706170-121741051:-,immunoglobulin_like_domain_containing_receptor_1	BT20_BREAST	0.62	0.89	0.6658	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	CIZ1--LCN2	21	67	CIZ1	10518	chr9:130939845:-	LCN2	20049	chr9:130911762:+	ONLY_REF_SPLICE	YES	474	13	0.16	0.87	0.1748	0.5576	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[12609],CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-,LCN2->chr9:130911350-130915734:+,lipocalin_2	BT20_BREAST	0.16	0.87	0.7324	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MORC3--DOPEY2	33	8	MORC3	18015	chr21:37742174:+	DOPEY2	66822	chr21:37660312:+	ONLY_REF_SPLICE	YES	43	29	0.49	0.59	0.2746	0.0666	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Heart_-_Atrial_Appendage=1},LOCAL_REARRANGEMENT:+:[25915],MORC3->MORC_family_CW-type_zinc_finger_3,chr21:37692487-37758446:+,DOPEY2->Oncogene{Bushman},chr21:37529080-37666572:+,dopey_family_member_2	BT20_BREAST	0.49	0.59	0.3412	TRUE	0	1	0	1	0	TRUE	ACH-000536
BT20_BREAST	LIMA1--USP22	22	12	LIMA1	7343	chr12:50615804:-	USP22	26857	chr17:20931987:-	ONLY_REF_SPLICE	YES	183	178	0.16	0.16	0.1831	0.0999	{Klijn_CCL:Breast=1},LIMA1->LIM_domain_and_actin_binding_1,chr12:50569571-50677329:-,USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22	BT20_BREAST	0.16	0.16	0.283	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	FHDC1--GOPC	23	3	FHDC1	1058	chr4:153857561:+	GOPC	21006	chr6:117900227:-	ONLY_REF_SPLICE	YES	0	82	1	0.24	0.1914	0.025	FHDC1->FH2_domain_containing_1,chr4:153857504-153900848:+,GOPC->Oncogene{Bushman},chr6:117639374-117923691:-,golgi-associated_PDZ_and_coiled-coil_motif_containing	BT20_BREAST	0.24	1	0.2164	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	TNRC18--RNF216	18	23	TNRC18	2230	chr7:5463072:-	RNF216	47495	chr7:5800769:-	ONLY_REF_SPLICE	YES	9	53	0.82	0.44	0.1498	0.1914	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216	BT20_BREAST	0.44	0.82	0.3412	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	CORO7--NMRAL1	21	9	CORO7	7741	chr16:4462357:-	NMRAL1	30789	chr16:4531880:-	ONLY_REF_SPLICE	YES	18	0	0.62	1	0.1748	0.0749	LOCAL_REARRANGEMENT:-:[35975],CORO7->chr16:4404543-4475706:-,coronin_7,NMRAL1->NmrA-like_family_domain_containing_1,chr16:4511681-4545764:-	BT20_BREAST	0.62	1	0.2497	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	PCM1--RP11-806O11.1	18	13	PCM1	39801	chr8:17868177:+	RP11-806O11.1	51717	chr8:17677867:+	ONLY_REF_SPLICE	YES	67	0	0.32	1	0.1498	0.1082	PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1,RP11-806O11.1->chr8:17666450-17678377:+	BT20_BREAST	0.32	1	0.258	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	PVT1--RP11-382A18.2	10	38	PVT1	2457	chr8:128808254:+	RP11-382A18.2	28458	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	77	0	0.38	1	0.0832	0.3163	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-382A18.2->chr8:128351519-128404876:+	BT20_BREAST	0.38	1	0.3995	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	TNRC18--RNF216	11	25	TNRC18	3660	chr7:5460691:-	RNF216	47495	chr7:5800769:-	ONLY_REF_SPLICE	YES	39	53	0.48	0.4	0.0915	0.2081	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216	BT20_BREAST	0.4	0.48	0.2996	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	EGFR--RP11-420L9.5	14	11	EGFR	42042	chr7:55324085:+	RP11-420L9.5	45436	chr6:3751510:+	INCL_NON_REF_SPLICE	YES	22	2	0.53	0.93	0.1165	0.0915	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,RP11-420L9.5->chr6:3751345-3754105:+	BT20_BREAST	0.53	0.93	0.208	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	VOPP1--TYW1	6	34	VOPP1	17158	chr7:55559975:-	TYW1	37326	chr7:66548417:+	ONLY_REF_SPLICE	YES	552	108	0.07	0.27	0.0499	0.283	VOPP1->chr7:55503749-55640681:-,vesicular,_overexpressed_in_cancer,_prosurvival_protein_1,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	BT20_BREAST	0.07	0.27	0.3329	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	PLEKHB2--ARHGEF4	9	17	PLEKHB2	5988	chr2:131878551:+	ARHGEF4	33871	chr2:131796426:+	ONLY_REF_SPLICE	YES	122	9	0.18	0.74	0.0749	0.1415	GTEx_v2:{count=1;pct=0.01%;dist=Pituitary=1},HGNC_GENEFAM,{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[57584],PLEKHB2->chr2:131862420-132111282:+,pleckstrin_homology_domain_containing_B2,ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+	BT20_BREAST	0.18	0.74	0.2164	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	RP4-735C1.4--FNDC7	12	5	RP4-735C1.4	1249	chr1:110268690:+	FNDC7	9682	chr1:109260399:+	ONLY_REF_SPLICE	YES	20	8	0.46	0.68	0.0999	0.0416	RP4-735C1.4->chr1:110268442-110317874:+,FNDC7->chr1:109255279-109285365:+,fibronectin_type_III_domain_containing_7	BT20_BREAST	0.46	0.68	0.1415	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	PVT1--RP11-382A18.2	3	40	PVT1	2520	chr8:128808317:+	RP11-382A18.2	28458	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	78	0	0.36	1	0.025	0.3329	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-382A18.2->chr8:128351519-128404876:+	BT20_BREAST	0.36	1	0.3579	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	TNRC18--RNF216	5	26	TNRC18	4905	chr7:5446781:-	RNF216	47495	chr7:5800769:-	ONLY_REF_SPLICE	YES	41	53	0.43	0.37	0.0416	0.2164	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216	BT20_BREAST	0.37	0.43	0.258	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	RP4-735C1.4--FNDC7	8	11	RP4-735C1.4	1249	chr1:110268690:+	FNDC7	7884	chr1:109255354:+	INCL_NON_REF_SPLICE	YES	20	0	0.49	1	0.0666	0.0915	RP4-735C1.4->chr1:110268442-110317874:+,FNDC7->chr1:109255279-109285365:+,fibronectin_type_III_domain_containing_7	BT20_BREAST	0.49	1	0.1581	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	RP11-673C5.1--RP11-112H10.6	10	0	RP11-673C5.1	1629	chr15:71457126:-	RP11-112H10.6	5396	chr17:56553562:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0832	0	RP11-673C5.1->chr15:71457109-71457754:-,RP11-112H10.6->chr17:56553499-56554311:-	BT20_BREAST	1	1	0.0832	TRUE	0	0	0	2	0	TRUE	ACH-000536
BT20_BREAST	FIGN--MLTK	8	6	FIGN	2110	chr2:164591413:-	MLTK	18655	chr2:173955726:+	ONLY_REF_SPLICE	YES	6	22	0.7	0.39	0.0666	0.0499	FIGN->chr2:164449906-164592522:-,fidgetin,MLTK->chr2:173940163-174132738:+	BT20_BREAST	0.39	0.7	0.1165	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	NOTCH1--GABBR2	8	4	NOTCH1	22118	chr9:139396200:-	GABBR2	48390	chr9:101073487:-	ONLY_REF_SPLICE	YES	21	12	0.36	0.5	0.0666	0.0333	Cosmic{samples=153,mutations=1,papers=1},NOTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:139388896-139440314:-,notch_1,GABBR2->chr9:101050391-101471479:-,gamma-aminobutyric_acid_type_B_receptor_subunit_2	BT20_BREAST	0.36	0.5	0.0999	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	FIGN--MLTK	7	2	FIGN	1175	chr2:164592348:-	MLTK	18655	chr2:173955726:+	ONLY_REF_SPLICE	YES	1	22	0.9	0.29	0.0583	0.0166	FIGN->chr2:164449906-164592522:-,fidgetin,MLTK->chr2:173940163-174132738:+	BT20_BREAST	0.29	0.9	0.0749	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	CTCF--LRRC36	1	22	CTCF	1318	chr16:67596627:+	LRRC36	19947	chr16:67375860:+	ONLY_REF_SPLICE	YES	11	0	0.68	1	0.0083	0.1831	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,LRRC36->chr16:67360701-67419106:+,leucine_rich_repeat_containing_36	BT20_BREAST	0.68	1	0.1914	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	CTCF--LRRC36	1	14	CTCF	1318	chr16:67596627:+	LRRC36	24422	chr16:67384105:+	ONLY_REF_SPLICE	YES	11	24	0.58	0.38	0.0083	0.1165	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,LRRC36->chr16:67360701-67419106:+,leucine_rich_repeat_containing_36	BT20_BREAST	0.38	0.58	0.1248	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	CTCF--LRRC36	1	13	CTCF	1318	chr16:67596627:+	LRRC36	26633	chr16:67397493:+	ONLY_REF_SPLICE	YES	11	34	0.56	0.29	0.0083	0.1082	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,LRRC36->chr16:67360701-67419106:+,leucine_rich_repeat_containing_36	BT20_BREAST	0.29	0.56	0.1165	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MORC3--DOPEY2	3	5	MORC3	18015	chr21:37742174:+	DOPEY2	66892	chr21:37660382:+	INCL_NON_REF_SPLICE	YES	43	42	0.16	0.16	0.025	0.0416	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Heart_-_Atrial_Appendage=1},LOCAL_REARRANGEMENT:+:[25915],MORC3->MORC_family_CW-type_zinc_finger_3,chr21:37692487-37758446:+,DOPEY2->Oncogene{Bushman},chr21:37529080-37666572:+,dopey_family_member_2	BT20_BREAST	0.16	0.16	0.0666	TRUE	0	1	0	1	0	TRUE	ACH-000536
BT20_BREAST	CTCF--LRRC36	2	6	CTCF	1318	chr16:67596627:+	LRRC36	32571	chr16:67409150:+	ONLY_REF_SPLICE	YES	11	36	0.42	0.18	0.0166	0.0499	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,LRRC36->chr16:67360701-67419106:+,leucine_rich_repeat_containing_36	BT20_BREAST	0.18	0.42	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	TNRC18--RNF216	3	2	TNRC18	1124	chr7:5464922:-	RNF216	47495	chr7:5800769:-	ONLY_REF_SPLICE	YES	2	53	0.71	0.09	0.025	0.0166	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216	BT20_BREAST	0.09	0.71	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	NTN4--RP11-536G4.2	3	0	NTN4	3897	chr12:96180717:-	RP11-536G4.2	21094	chr12:96226862:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:-:[4193],NTN4->chr12:96051583-96184930:-,netrin_4,RP11-536G4.2->chr12:96189123-96252617:-	BT20_BREAST	1	1	0.025	TRUE	0	1	0	1	1	TRUE	ACH-000536
BT20_BREAST	CTCF--LRRC36	1	6	CTCF	1318	chr16:67596627:+	LRRC36	32582	chr16:67409161:+	ONLY_REF_SPLICE	YES	11	34	0.39	0.17	0.0083	0.0499	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,LRRC36->chr16:67360701-67419106:+,leucine_rich_repeat_containing_36	BT20_BREAST	0.17	0.39	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	RP4-735C1.4--FNDC7	1	6	RP4-735C1.4	1249	chr1:110268690:+	FNDC7	8663	chr1:109256133:+	ONLY_REF_SPLICE	NO	20	7	0.26	0.5	0.0083	0.0499	RP4-735C1.4->chr1:110268442-110317874:+,FNDC7->chr1:109255279-109285365:+,fibronectin_type_III_domain_containing_7	BT20_BREAST	0.26	0.5	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	CORO7--NMRAL1	2	1	CORO7	7741	chr16:4462357:-	NMRAL1	34176	chr16:4524793:-	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0166	0.0083	LOCAL_REARRANGEMENT:-:[35975],CORO7->chr16:4404543-4475706:-,coronin_7,NMRAL1->NmrA-like_family_domain_containing_1,chr16:4511681-4545764:-	BT20_BREAST	0.14	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	ACTB--KRT7	2	0	ACTB	4493	chr7:5570155:-	KRT7	11623	chr12:52627060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,KRT7->chr12:52626304-52645970:+,keratin_7	BT20_BREAST	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	METTL15--RBM26	2	0	METTL15	3728	chr11:28135151:+	RBM26	45503	chr13:79889128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	METTL15->chr11:28129795-28355054:+,methyltransferase_like_15,RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-	BT20_BREAST	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	NCOA3--NFYB	2	0	NCOA3	1163	chr20:46130763:+	NFYB	31446	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	BT20_BREAST	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	PXDC1--EGFR-AS1	2	0	PXDC1	1751	chr6:3751510:-	EGFR-AS1	12148	chr7:55250170:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	PXDC1->PX_domain_containing_1,chr6:3722848-3752260:-,EGFR-AS1->EGFR_antisense_RNA_1,chr7:55247443-55256627:-	BT20_BREAST	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	ST14--APLP2	2	0	ST14	1499	chr11:130029955:+	APLP2	22856	chr11:129979324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	LOCAL_REARRANGEMENT:+:[14758],ST14->chr11:130029457-130080271:+,suppression_of_tumorigenicity_14,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	BT20_BREAST	1	1	0.0166	TRUE	0	2	0	3	1	TRUE	ACH-000536
BT20_BREAST	TMEM9B--ZCCHC14	2	0	TMEM9B	1122	chr11:8986437:-	ZCCHC14	25362	chr16:87443941:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14	BT20_BREAST	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	LRRC28--IL27	1	3	LRRC28	4123	chr15:99816821:+	IL27	34172	chr16:28515371:-	ONLY_REF_SPLICE	YES	12	0	0.25	1	0.0083	0.025	LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28,IL27->chr16:28510683-28523372:-,interleukin_27	BT20_BREAST	0.25	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	FIGN--MLTK	1	2	FIGN	2110	chr2:164591413:-	MLTK	21246	chr2:174034533:+	ONLY_REF_SPLICE	YES	6	80	0.33	0.04	0.0083	0.0166	FIGN->chr2:164449906-164592522:-,fidgetin,MLTK->chr2:173940163-174132738:+	BT20_BREAST	0.04	0.33	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	SIL1--CTNNA1	1	2	SIL1	15184	chr5:138456724:-	CTNNA1	38160	chr5:138117612:+	ONLY_REF_SPLICE	YES	68	14	0.04	0.18	0.0083	0.0166	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=6;pct=0.07%;dist=Cells_-_Transformed_fibroblasts=2,Artery_-_Aorta=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1},{Klijn_CCL:Skin=1},LOCAL_INVERSION:-:+:[11686],SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	BT20_BREAST	0.04	0.18	0.0249	TRUE	0	1	0	2	0	TRUE	ACH-000536
BT20_BREAST	PLEKHB2--ARHGEF4	1	1	PLEKHB2	1552	chr2:131862971:+	ARHGEF4	33871	chr2:131796426:+	ONLY_REF_SPLICE	NO	4	9	0.33	0.18	0.0083	0.0083	GTEx_v2:{count=1;pct=0.01%;dist=Pituitary=1},HGNC_GENEFAM,{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[57584],PLEKHB2->chr2:131862420-132111282:+,pleckstrin_homology_domain_containing_B2,ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+	BT20_BREAST	0.18	0.33	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	PLEKHB2--ARHGEF4	1	1	PLEKHB2	1552	chr2:131862971:+	ARHGEF4	31017	chr2:131785518:+	ONLY_REF_SPLICE	NO	4	1	0.33	0.67	0.0083	0.0083	GTEx_v2:{count=1;pct=0.01%;dist=Pituitary=1},HGNC_GENEFAM,{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[57584],PLEKHB2->chr2:131862420-132111282:+,pleckstrin_homology_domain_containing_B2,ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+	BT20_BREAST	0.33	0.67	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
SW1710_URINARY_TRACT	ST5--FABP1	37	3	ST5	13406	chr11:8832794:-	FABP1	56004	chr2:88422623:-	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.5036	0.0408	ST5->Oncogene{Bushman},chr11:8714898-8932498:-,suppression_of_tumorigenicity_5,FABP1->chr2:88422510-88427635:-,fatty_acid_binding_protein_1	SW1710_URINARY_TRACT	0.93	1	0.5444	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	ST5--FABP1	23	5	ST5	14136	chr11:8832064:-	FABP1	56004	chr2:88422623:-	ONLY_REF_SPLICE	YES	14	0	0.67	1	0.3131	0.0681	ST5->Oncogene{Bushman},chr11:8714898-8932498:-,suppression_of_tumorigenicity_5,FABP1->chr2:88422510-88427635:-,fatty_acid_binding_protein_1	SW1710_URINARY_TRACT	0.67	1	0.3812	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	EIF1--DEGS1	14	0	EIF1	1112	chr17:39845248:+	DEGS1	9080	chr1:224370976:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1906	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1	SW1710_URINARY_TRACT	1	1	0.1906	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	DBNL--RASA4B	3	0	DBNL	1181	chr7:44084419:+	RASA4B	28214	chr7:102141674:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	DBNL->chr7:44084239-44109055:+,drebrin_like,RASA4B->RAS_p21_protein_activator_4B,chr7:102122892-102158228:-	SW1710_URINARY_TRACT	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	APCDD1L-AS1--MRPL45	2	0	APCDD1L-AS1	5901	chr20:57098862:+	MRPL45	23822	chr17:36478009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	ARHGAP26--PFDN1	2	0	ARHGAP26	18023	chr5:142311690:+	PFDN1	54264	chr5:139625642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,PFDN1->chr5:139624624-139682706:-,prefoldin_subunit_1	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	ATP5C1--PSMB1	2	0	ATP5C1	1135	chr10:7830226:+	PSMB1	15041	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	DCBLD2--LINC00973	2	0	DCBLD2	5444	chr3:98600384:-	LINC00973	31158	chr3:98701308:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	LOCAL_INVERSION:-:+:[79369],DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,LINC00973->chr3:98699902-98701940:+,long_intergenic_non-protein_coding_RNA_973	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	2	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	EPB41L4A--NREP	2	0	EPB41L4A	23542	chr5:111530265:-	NREP	46998	chr5:111071204:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	EPB41L4A->chr5:111478138-111755013:-,erythrocyte_membrane_protein_band_4.1_like_4A,NREP->chr5:110998318-111333161:-,neuronal_regeneration_related_protein	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	FBXO3--CDH2	2	0	FBXO3	17162	chr11:33768676:-	CDH2	28987	chr18:25727748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	FBXO3->F-box_protein_3,chr11:33762485-33796089:-,CDH2->cadherin_2,chr18:25530930-25757410:-	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	GALNT14--GNAS	2	0	GALNT14	15661	chr2:31215704:-	GNAS	48858	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GALNT14->chr2:31133333-31378068:-,polypeptide_N-acetylgalactosaminyltransferase_14,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	HGSNAT--PRIM2	2	0	HGSNAT	1202	chr8:42995757:+	PRIM2	35720	chr6:57244699:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	HGSNAT->chr8:42995556-43057998:+,heparan-alpha-glucosaminide_N-acetyltransferase,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	NCOA4--IFNGR2	2	0	NCOA4	1189	chr10:51565296:+	IFNGR2	25633	chr21:34804484:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NCOA4->Oncogene{Bushman},chr10:51565108-51590734:+,nuclear_receptor_coactivator_4,IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1)	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	RCC1--PFKM	2	0	RCC1	2920	chr1:28835417:+	PFKM	38914	chr12:48536565:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PFKM->chr12:48498922-48540187:+,phosphofructokinase,_muscle	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	RPRD1A--KIAA1468	2	0	RPRD1A	1323	chr18:33647217:-	KIAA1468	24232	chr18:59878386:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,KIAA1468->KIAA1468,chr18:59854491-59974355:+	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	WDSUB1--GLS	2	0	WDSUB1	4047	chr2:160136272:-	GLS	19277	chr2:191765290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	WDSUB1->WD_repeat,_sterile_alpha_motif_and_U-box_domain_containing_1,chr2:160092304-160143310:-,GLS->chr2:191745553-191830278:+,glutaminase	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	YTHDF1--ARFGEF2	2	0	YTHDF1	2738	chr20:61845216:-	ARFGEF2	12843	chr20:47557736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	YTHDF1->YTH_N6-methyladenosine_RNA_binding_protein_1,chr20:61826781-61847586:-,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	YWHAQ--C10orf11	2	0	YWHAQ	1856	chr2:9770288:-	C10orf11	17874	chr10:77795766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta,C10orf11->chr10:77360998-78319925:+,chromosome_10_open_reading_frame_11	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	ZBTB38--RPS6KC1	2	0	ZBTB38	1244	chr3:141043298:+	RPS6KC1	47428	chr1:213415912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38,RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	DBF4B--UBTF	1	1	DBF4B	2902	chr17:42800390:+	UBTF	23874	chr17:42295664:-	ONLY_REF_SPLICE	NO	11	29	0.15	0.06	0.0136	0.0136	DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+,UBTF->chr17:42282401-42298994:-,upstream_binding_transcription_factor,_RNA_polymerase_I	SW1710_URINARY_TRACT	0.06	0.15	0.0272	TRUE	0	0	0	2	0	TRUE	ACH-000566
BEN_LUNG	ITPR2--RP11-625L16.1	421	70	ITPR2	12394	chr12:26839414:-	RP11-625L16.1	69159	chr12:24913064:+	ONLY_REF_SPLICE	YES	240	0	0.67	1	3.3093	0.5502	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,RP11-625L16.1->chr12:24857499-24927147:+	BEN_LUNG	0.67	1	3.8595	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FGFR1OP2--ITPR2	288	129	FGFR1OP2	3073	chr12:27107226:+	ITPR2	68350	chr12:26581021:-	ONLY_REF_SPLICE	YES	746	322	0.36	0.56	2.2639	1.014	{Klijn_CCL:Lung=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	BEN_LUNG	0.36	0.56	3.2779	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	PTMA--PTMS	279	0	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.1931	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	BEN_LUNG	1	1	2.1931	TRUE	0	0	0	16	0	TRUE	ACH-000603
BEN_LUNG	PRSS3P1--KRT8	133	0	PRSS3P1	3295	chr7:142470637:+	KRT8	17295	chr12:53293794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0455	0	PRSS3P1->chr7:142468264-142471794:+,protease,_serine_3_pseudogene_1,KRT8->chr12:53290977-53343738:-,keratin_8	BEN_LUNG	1	1	1.0455	TRUE	1	0	0	3	0	TRUE	ACH-000603
BEN_LUNG	ITPR2--LRMP	115	53	ITPR2	39110	chr12:26709166:-	LRMP	77866	chr12:25205169:+	ONLY_REF_SPLICE	YES	353	0	0.32	1	0.904	0.4166	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	BEN_LUNG	0.32	1	1.3206	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	HNRNPH1--C5orf60	89	9	HNRNPH1	6671	chr5:179047893:-	C5orf60	19554	chr5:179068879:-	ONLY_REF_SPLICE	YES	332	0	0.23	1	0.6996	0.0707	LOCAL_REARRANGEMENT:-:[6760],HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),C5orf60->chr5:179068545-179072047:-,chromosome_5_open_reading_frame_60	BEN_LUNG	0.23	1	0.7703	TRUE	0	0	0	2	0	TRUE	ACH-000603
BEN_LUNG	CCDC91--FAM72D	84	18	CCDC91	20039	chr12:28515448:+	FAM72D	39019	chr1:143897641:-	ONLY_REF_SPLICE	YES	349	22	0.23	0.82	0.6603	0.1415	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,FAM72D->chr1:143896452-143913143:-,family_with_sequence_similarity_72_member_D	BEN_LUNG	0.23	0.82	0.8018	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	ARNTL2--RP11-283G6.4	65	11	ARNTL2	6799	chr12:27533337:+	RP11-283G6.4	25180	chr12:26479409:-	ONLY_REF_SPLICE	YES	103	0	0.42	1	0.5109	0.0865	ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+,RP11-283G6.4->chr12:26364097-26488789:-	BEN_LUNG	0.42	1	0.5974	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	RHOA--QRICH1	45	11	RHOA	6656	chr3:49405861:-	QRICH1	17997	chr3:49114471:-	ONLY_REF_SPLICE	YES	150	12	0.27	0.82	0.3537	0.0865	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	BEN_LUNG	0.27	0.82	0.4402	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	KIF3B--RP4-553F4.6	45	1	KIF3B	1102	chr20:30865568:+	RP4-553F4.6	17049	chr20:32385801:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.3537	0.0079	KIF3B->chr20:30865467-30922814:+,kinesin_family_member_3B,RP4-553F4.6->chr20:32375179-32398903:-	BEN_LUNG	0.98	1	0.3616	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	ITPR2--LRMP	33	17	ITPR2	39110	chr12:26709166:-	LRMP	79588	chr12:25214526:+	ONLY_REF_SPLICE	YES	353	34	0.12	0.6	0.2594	0.1336	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	BEN_LUNG	0.12	0.6	0.393	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	ITPR2--LRMP	21	27	ITPR2	39110	chr12:26709166:-	LRMP	78425	chr12:25205728:+	ONLY_REF_SPLICE	YES	353	16	0.12	0.75	0.1651	0.2122	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	BEN_LUNG	0.12	0.75	0.3773	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	CCDC91--RASSF8-AS1	16	10	CCDC91	24767	chr12:28605587:+	RASSF8-AS1	37817	chr12:26109697:-	ONLY_REF_SPLICE	YES	433	14	0.06	0.65	0.1258	0.0786	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RASSF8-AS1->RASSF8_atnisense_RNA_1,chr12:26092262-26112698:-	BEN_LUNG	0.06	0.65	0.2044	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	CXCL16--CYB561A3	18	0	CXCL16	5838	chr17:4637353:-	CYB561A3	13404	chr11:61125738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1415	0	GTEx&tcga_normals:19/3694=0.51%,GTEx:0.05%,CXCL16->C-X-C_motif_chemokine_ligand_16,chr17:4636821-4643217:-,CYB561A3->chr11:61116217-61129771:-,cytochrome_b561_family_member_A3	BEN_LUNG	1	1	0.1415	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	ITPR2--LRMP	12	12	ITPR2	39110	chr12:26709166:-	LRMP	80650	chr12:25215754:+	ONLY_REF_SPLICE	YES	353	37	0.06	0.39	0.0943	0.0943	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	BEN_LUNG	0.06	0.39	0.1886	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	SLC38A11--KCNH7	13	6	SLC38A11	8093	chr2:165793860:-	KCNH7	21057	chr2:163693277:-	ONLY_REF_SPLICE	YES	36	16	0.35	0.54	0.1022	0.0472	SLC38A11->chr2:165752696-165812035:-,solute_carrier_family_38_member_11,KCNH7->chr2:163227917-163695240:-,potassium_voltage-gated_channel_subfamily_H_member_7	BEN_LUNG	0.35	0.54	0.1494	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	PTMA--PTMS	13	0	PTMA	6054	chr2:232576687:+	PTMS	13753	chr12:6879118:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1022	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	BEN_LUNG	1	1	0.1022	TRUE	0	0	0	16	0	TRUE	ACH-000603
BEN_LUNG	FRS2--TRHDE-AS1	11	5	FRS2	1182	chr12:69864310:+	TRHDE-AS1	27793	chr12:72658401:-	ONLY_REF_SPLICE	YES	49	0	0.25	1	0.0865	0.0393	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,TRHDE-AS1->TRHDE_antisense_RNA_1,chr12:72647288-72668687:-	BEN_LUNG	0.25	1	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	TAF4--ZNF341	10	4	TAF4	2360	chr20:60639507:-	ZNF341	38834	chr20:32357890:+	ONLY_REF_SPLICE	YES	18	7	0.44	0.67	0.0786	0.0314	TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,ZNF341->chr20:32319463-32380075:+,zinc_finger_protein_341	BEN_LUNG	0.44	0.67	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	HNRNPH1--C5orf60	7	10	HNRNPH1	6708	chr5:179047856:-	C5orf60	19308	chr5:179069125:-	INCL_NON_REF_SPLICE	YES	353	0	0.05	1	0.055	0.0786	LOCAL_REARRANGEMENT:-:[6760],HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),C5orf60->chr5:179068545-179072047:-,chromosome_5_open_reading_frame_60	BEN_LUNG	0.05	1	0.1336	TRUE	0	0	0	2	0	TRUE	ACH-000603
BEN_LUNG	RP11-268G12.1--NR0B1	8	3	RP11-268G12.1	1247	chrX:27416868:-	NR0B1	17355	chrX:30322940:-	ONLY_REF_SPLICE	YES	6	198	0.65	0.05	0.0629	0.0236	RP11-268G12.1->chrX:27193037-27417114:-,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	BEN_LUNG	0.05	0.65	0.0865	TRUE	0	1	0	3	1	TRUE	ACH-000603
BEN_LUNG	RAD18--AC091493.2	8	0	RAD18	10780	chr3:8953996:-	AC091493.2	25167	chr3:16733879:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0629	0	RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,AC091493.2->chr3:16729493-16738986:-	BEN_LUNG	1	1	0.0629	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	C22orf29--TXNRD2	7	3	C22orf29	1454	chr22:19841966:-	TXNRD2	16161	chr22:19907122:-	ONLY_REF_SPLICE	YES	16	10	0.38	0.5	0.055	0.0236	LOCAL_REARRANGEMENT:-:[20621],C22orf29->chr22:19833661-19842419:-,chromosome_22_open_reading_frame_29,TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2	BEN_LUNG	0.38	0.5	0.0786	TRUE	0	1	0	1	0	TRUE	ACH-000603
BEN_LUNG	SLC38A11--KCNH7	6	1	SLC38A11	8093	chr2:165793860:-	KCNH7	22288	chr2:163393590:-	ONLY_REF_SPLICE	YES	36	15	0.16	0.32	0.0472	0.0079	SLC38A11->chr2:165752696-165812035:-,solute_carrier_family_38_member_11,KCNH7->chr2:163227917-163695240:-,potassium_voltage-gated_channel_subfamily_H_member_7	BEN_LUNG	0.16	0.32	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FRS2--TRHDE-AS1	4	5	FRS2	3339	chr12:69880077:+	TRHDE-AS1	27793	chr12:72658401:-	ONLY_REF_SPLICE	YES	53	0	0.15	1	0.0314	0.0393	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,TRHDE-AS1->TRHDE_antisense_RNA_1,chr12:72647288-72668687:-	BEN_LUNG	0.15	1	0.0707	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	PGS1--RP11-806H10.4	5	1	PGS1	11842	chr17:76411108:+	RP11-806H10.4	26314	chr17:76369856:+	ONLY_REF_SPLICE	YES	79	0	0.07	1	0.0393	0.0079	LOCAL_REARRANGEMENT:+:[4729],PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1,RP11-806H10.4->chr17:76356534-76369992:+	BEN_LUNG	0.07	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	RHOA--QRICH1	3	7	RHOA	4432	chr3:49412867:-	QRICH1	17997	chr3:49114471:-	ONLY_REF_SPLICE	YES	178	12	0.05	0.45	0.0236	0.055	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	BEN_LUNG	0.05	0.45	0.0786	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FRS2--TRHDE-AS1	4	2	FRS2	1182	chr12:69864310:+	TRHDE-AS1	33334	chr12:72649554:-	ONLY_REF_SPLICE	YES	49	0	0.11	1	0.0314	0.0157	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,TRHDE-AS1->TRHDE_antisense_RNA_1,chr12:72647288-72668687:-	BEN_LUNG	0.11	1	0.0471	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	CASC9--RP11-300E4.2	4	1	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	15	0	0.25	1	0.0314	0.0079	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	BEN_LUNG	0.25	1	0.0393	TRUE	0	23	0	19	23	TRUE	ACH-000603
BEN_LUNG	RP4-553F4.6--TTLL9	4	1	RP4-553F4.6	3239	chr20:32383320:-	TTLL9	22034	chr20:30525199:+	ONLY_REF_SPLICE	YES	20	1	0.2	0.83	0.0314	0.0079	RP4-553F4.6->chr20:32375179-32398903:-,TTLL9->chr20:30458505-30532764:+,tubulin_tyrosine_ligase_like_9	BEN_LUNG	0.2	0.83	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	CKAP5--SHB	4	0	CKAP5	15635	chr11:46817144:-	SHB	53247	chr9:37920001:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5,SHB->SH2_domain_containing_adaptor_protein_B,chr9:37919131-38069210:-	BEN_LUNG	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FGFR1OP2--ITPR2	4	0	FGFR1OP2	1328	chr12:27091643:+	ITPR2	73087	chr12:26553191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	{Klijn_CCL:Lung=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	BEN_LUNG	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FTL--GPR56	4	0	FTL	1162	chr19:49468719:+	GPR56	32497	chr16:57695828:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,GPR56->chr16:57644564-57698944:+	BEN_LUNG	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	DPY19L3--C18orf25	3	2	DPY19L3	21714	chr19:32968560:+	C18orf25	35958	chr18:43833663:+	ONLY_REF_SPLICE	YES	18	65	0.22	0.07	0.0236	0.0157	DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans),C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25	BEN_LUNG	0.07	0.22	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	METTL15--RP11-115J23.1	3	2	METTL15	3728	chr11:28135151:+	RP11-115J23.1	23893	chr11:29059289:+	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0236	0.0157	METTL15->chr11:28129795-28355054:+,methyltransferase_like_15,RP11-115J23.1->chr11:28724162-29085368:+	BEN_LUNG	0.28	1	0.0393	TRUE	0	0	0	2	0	TRUE	ACH-000603
BEN_LUNG	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	5082	chr22:16186811:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	BEN_LUNG	1	1	0.0236	TRUE	0	3	0	6	3	TRUE	ACH-000603
BEN_LUNG	CXCL16--CYB561A3	3	0	CXCL16	5839	chr17:4637352:-	CYB561A3	13404	chr11:61125738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:19/3694=0.51%,GTEx:0.05%,CXCL16->C-X-C_motif_chemokine_ligand_16,chr17:4636821-4643217:-,CYB561A3->chr11:61116217-61129771:-,cytochrome_b561_family_member_A3	BEN_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FGF14--SYK	2	4	FGF14	1304	chr13:103053821:-	SYK	15794	chr9:93606140:+	ONLY_REF_SPLICE	YES	5	6	0.55	0.5	0.0157	0.0314	FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase	BEN_LUNG	0.5	0.55	0.0471	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	VWDE--PHF14	2	2	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	11	55	0.27	0.07	0.0157	0.0157	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	BEN_LUNG	0.07	0.27	0.0314	TRUE	0	6	0	17	2	TRUE	ACH-000603
BEN_LUNG	CBFA2T3--DBNDD1	2	1	CBFA2T3	6570	chr16:88967912:-	DBNDD1	25783	chr16:90075838:-	ONLY_REF_SPLICE	YES	13	14	0.19	0.18	0.0157	0.0079	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,DBNDD1->chr16:90071273-90086536:-,dysbindin_(dystrobrevin_binding_protein_1)_domain_containing_1	BEN_LUNG	0.18	0.19	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	RP4-553F4.6--TTLL9	2	1	RP4-553F4.6	3239	chr20:32383320:-	TTLL9	20837	chr20:30522495:+	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0157	0.0079	RP4-553F4.6->chr20:32375179-32398903:-,TTLL9->chr20:30458505-30532764:+,tubulin_tyrosine_ligase_like_9	BEN_LUNG	0.13	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	AP003900.6--TPTE	2	0	AP003900.6	1122	chr21:11169841:+	TPTE	19477	chr21:10987877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	AP003900.6->chr21:11169720-11184046:+,TPTE->chr21:10906201-11029719:-,transmembrane_phosphatase_with_tensin_homology	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	APP--LIPI	2	0	APP	5253	chr21:27484296:-	LIPI	43577	chr21:15481401:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,LIPI->chr21:15481134-15583166:-,lipase_I	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	CCDC91--FAM72D	2	0	CCDC91	12544	chr12:28412375:+	FAM72D	39019	chr1:143897641:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,FAM72D->chr1:143896452-143913143:-,family_with_sequence_similarity_72_member_D	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	CCDC91--MRPS35	2	0	CCDC91	5569	chr12:28343574:+	MRPS35	43680	chr12:27908114:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	CLEC16A--TM7SF3	2	0	CLEC16A	11984	chr16:11097162:+	TM7SF3	46152	chr12:27152581:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	{Klijn_CCL:Lung=1},CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	NSD1--UBE2D2	2	0	NSD1	4006	chr5:176563031:+	UBE2D2	48237	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	BEN_LUNG	1	1	0.0157	TRUE	0	1	0	1	1	TRUE	ACH-000603
BEN_LUNG	SYNE2--ENC1	2	0	SYNE2	4981	chr14:64375945:+	ENC1	147132	chr5:73925817:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	SYNE2->Oncogene{Bushman},chr14:64319683-64693165:+,spectrin_repeat_containing_nuclear_envelope_protein_2,ENC1->Oncogene{Bushman},chr5:73923234-73937249:-,ectodermal-neural_cortex_1	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	TMTC2--KRAS	2	0	TMTC2	1790	chr12:83081448:+	KRAS	28949	chr12:25380346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2,KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FRS2--TRHDE-AS1	1	2	FRS2	4453	chr12:69885431:+	TRHDE-AS1	33334	chr12:72649554:-	ONLY_REF_SPLICE	YES	52	0	0.05	1	0.0079	0.0157	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,TRHDE-AS1->TRHDE_antisense_RNA_1,chr12:72647288-72668687:-	BEN_LUNG	0.05	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FGF14--SYK	1	1	FGF14	1304	chr13:103053821:-	SYK	17252	chr9:93607716:+	ONLY_REF_SPLICE	YES	5	13	0.29	0.13	0.0079	0.0079	FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase	BEN_LUNG	0.13	0.29	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	SLC16A9--RP11-181F12.1	1	1	SLC16A9	5923	chr10:61432528:-	RP11-181F12.1	15870	chr10:86956689:-	ONLY_REF_SPLICE	YES	14	0	0.12	1	0.0079	0.0079	SLC16A9->chr10:61410523-61495760:-,solute_carrier_family_16_member_9,RP11-181F12.1->chr10:86953177-86957714:-	BEN_LUNG	0.12	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000603
PANC1005_PANCREAS	CDC6--AC004231.2	75	25	CDC6	1458	chr17:38444342:+	AC004231.2	17211	chr17:39131749:+	ONLY_REF_SPLICE	YES	295	0	0.25	1	0.8917	0.2972	CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,AC004231.2->chr17:39077682-39132178:+	PANC1005_PANCREAS	0.25	1	1.1889	TRUE	0	0	0	1	0	TRUE	ACH-000060
PANC1005_PANCREAS	SLC30A7--RP11-192P3.4	23	14	SLC30A7	1596	chr1:101362227:+	RP11-192P3.4	24102	chr10:31548911:+	ONLY_REF_SPLICE	YES	49	0	0.43	1	0.2734	0.1664	SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7,RP11-192P3.4->chr10:31476812-31550839:+	PANC1005_PANCREAS	0.43	1	0.4398	TRUE	0	0	0	1	0	TRUE	ACH-000060
PANC1005_PANCREAS	PPAP2B--FAM188B2	8	0	PPAP2B	3948	chr1:57044551:-	FAM188B2	23393	chr3:150591154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0951	0	PPAP2B->Oncogene{Bushman},chr1:56960419-57110974:-,FAM188B2->chr3:150588832-150612089:-,family_with_sequence_similarity_188_member_B2	PANC1005_PANCREAS	1	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000060
PANC1005_PANCREAS	ANP32B--SEPT7	3	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	PANC1005_PANCREAS	1	1	0.0357	TRUE	1	1	0	18	1	TRUE	ACH-000060
PANC1005_PANCREAS	EDF1--TPRN	3	0	EDF1	2690	chr9:139757740:-	TPRN	13208	chr9:140087143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	{Klijn_CCL:Colo-Rectal=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,TPRN->chr9:140086069-140098645:-,taperin	PANC1005_PANCREAS	1	1	0.0357	TRUE	0	4	0	4	0	TRUE	ACH-000060
PANC1005_PANCREAS	HMGA2--LUM	2	1	HMGA2	5315	chr12:66232349:+	LUM	30462	chr12:91498096:-	ONLY_REF_SPLICE	YES	54	1	0.05	0.75	0.0238	0.0119	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	PANC1005_PANCREAS	0.05	0.75	0.0357	TRUE	0	0	0	8	0	TRUE	ACH-000060
PANC1005_PANCREAS	DYNLT1--COPB1	2	0	DYNLT1	5295	chr6:159058160:-	COPB1	28172	chr11:14482877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1,COPB1->chr11:14464986-14521573:-,coatomer_protein_complex_subunit_beta_1	PANC1005_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000060
PANC1005_PANCREAS	ZNF787--EEF1D	2	0	ZNF787	1109	chr19:56632541:-	EEF1D	20801	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	PANC1005_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000060
PANC1005_PANCREAS	CLMN--RP4-683M8.2	1	1	CLMN	1196	chr14:95786048:-	RP4-683M8.2	34429	chr1:48519883:+	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0119	0.0119	CLMN->calmin_(calponin-like,_transmembrane),chr14:95648277-95786243:-,RP4-683M8.2->chr1:48519217-48532873:+	PANC1005_PANCREAS	0.29	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000060
PANC1005_PANCREAS	RP11-435B5.4--XKR6	1	1	RP11-435B5.4	2843	chr1:143465380:-	XKR6	21389	chr8:11052730:-	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.0119	0.0119	RP11-435B5.4->chr1:143354963-143467632:-,XKR6->XK_related_6,chr8:10753555-11058875:-	PANC1005_PANCREAS	0.33	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000060
CAL27_UPPER_AERODIGESTIVE_TRACT	C17orf76-AS1--RP1-68D18.3	5	1	C17orf76-AS1	1593	chr17:16342728:+	RP1-68D18.3	13205	chr11:35303362:+	INCL_NON_REF_SPLICE	YES	58	0	0.09	1	0.0612	0.0122	C17orf76-AS1->chr17:16342136-16381992:+,RP1-68D18.3->chr11:35303360-35307556:+	CAL27_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MPP5--GPHN	3	1	MPP5	1425	chr14:67708250:+	GPHN	46695	chr14:67555700:+	ONLY_REF_SPLICE	YES	17	33	0.19	0.11	0.0367	0.0122	YOSHIHARA_TCGA_num_samples[BLCA:2|BRCA:1|LUAD:2],{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[59306],MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	CAL27_UPPER_AERODIGESTIVE_TRACT	0.11	0.19	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	CD47--STX17	2	0	CD47	1163	chr3:107809710:-	STX17	25292	chr9:102677460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CD47->CD47_molecule,chr3:107762145-107809872:-,STX17->chr9:102668915-102732618:+,syntaxin_17	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	EPHB2--LPGAT1	2	0	EPHB2	8566	chr1:23191705:+	LPGAT1	32959	chr1:211952386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+,LPGAT1->chr1:211916799-212004114:-,lysophosphatidylglycerol_acyltransferase_1	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	HEATR5B--ODF2L	2	0	HEATR5B	4375	chr2:37304054:-	ODF2L	58252	chr1:86826219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	HEATR5B->HEAT_repeat_containing_5B,chr2:37195526-37311485:-,ODF2L->chr1:86814344-86862023:-,outer_dense_fiber_of_sperm_tails_2_like	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	PDS5B--N4BP2L2	2	0	PDS5B	1167	chr13:33160730:+	N4BP2L2	61684	chr13:33054774:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	LOCAL_INVERSION:+:-:[47594],PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	POLD2--PSMB1	2	0	POLD2	3525	chr7:44161433:-	PSMB1	13684	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	POLD2->chr7:44154286-44163957:-,polymerase_(DNA)_delta_2,_accessory_subunit,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	POLR2J4--CHD2	2	0	POLR2J4	4398	chr7:44053192:-	CHD2	50467	chr15:93510555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000832
HT144_SKIN	GPC6--GCHFR	27	18	GPC6	7767	chr13:94958377:+	GCHFR	20264	chr15:41058025:+	ONLY_REF_SPLICE	YES	79	7	0.36	0.87	0.3754	0.2503	{Klijn_CCL:Skin=1},GPC6->chr13:93879095-95059655:+,glypican_6,GCHFR->GTP_cyclohydrolase_I_feedback_regulator,chr15:41056218-41059906:+	HT144_SKIN	0.36	0.87	0.6257	TRUE	0	0	0	1	0	TRUE	ACH-000322
HT144_SKIN	BAGE2--CTBP2P1	27	9	BAGE2	5645	chr21:11058161:-	CTBP2P1	23085	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	21	0	0.63	1	0.3754	0.1251	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	HT144_SKIN	0.63	1	0.5005	TRUE	0	0	0	6	0	TRUE	ACH-000322
HT144_SKIN	CORO7--NMRAL1	17	4	CORO7	3926	chr16:4466460:-	NMRAL1	30789	chr16:4531880:-	ONLY_REF_SPLICE	YES	51	0	0.29	1	0.2364	0.0556	LOCAL_REARRANGEMENT:-:[35975],CORO7->chr16:4404543-4475706:-,coronin_7,NMRAL1->NmrA-like_family_domain_containing_1,chr16:4511681-4545764:-	HT144_SKIN	0.29	1	0.292	TRUE	0	0	0	1	0	TRUE	ACH-000322
HT144_SKIN	TRIM37--AC073094.4	10	2	TRIM37	25485	chr17:57094657:-	AC073094.4	36610	chr7:1308598:+	ONLY_REF_SPLICE	YES	54	0	0.18	1	0.139	0.0278	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,AC073094.4->chr7:1306989-1308903:+	HT144_SKIN	0.18	1	0.1668	TRUE	0	0	0	1	0	TRUE	ACH-000322
HT144_SKIN	PPP6R2--C19orf48	2	0	PPP6R2	2378	chr22:50810579:+	C19orf48	30816	chr19:51305514:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2,C19orf48->chr19:51300961-51308186:-,chromosome_19_open_reading_frame_48	HT144_SKIN	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000322
HT144_SKIN	UCN2--COL7A1	2	0	UCN2	1071	chr3:48601136:-	COL7A1	32167	chr3:48606288:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	LOCAL_REARRANGEMENT:-:[300],UCN2->chr3:48599160-48601206:-,urocortin_2,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	HT144_SKIN	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000322
HT144_SKIN	TRIM37--AC073094.4	1	1	TRIM37	24356	chr17:57105776:-	AC073094.4	36610	chr7:1308598:+	ONLY_REF_SPLICE	YES	50	0	0.04	1	0.0139	0.0139	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,AC073094.4->chr7:1306989-1308903:+	HT144_SKIN	0.04	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000322
HCC70_BREAST	C5orf22--PDCD6	42	27	C5orf22	2262	chr5:31534432:+	PDCD6	27851	chr5:311408:+	ONLY_REF_SPLICE	YES	125	909	0.36	0.07	0.4775	0.3069	C5orf22->chr5:31532373-31555165:+,chromosome_5_open_reading_frame_22,PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6	HCC70_BREAST	0.07	0.36	0.7844	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	C5orf22--PDCD6	9	33	C5orf22	2354	chr5:31534524:+	PDCD6	27851	chr5:311408:+	ONLY_REF_SPLICE	YES	160	909	0.21	0.04	0.1023	0.3752	C5orf22->chr5:31532373-31555165:+,chromosome_5_open_reading_frame_22,PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6	HCC70_BREAST	0.04	0.21	0.4775	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	NPR3--LMBRD2	5	2	NPR3	3494	chr5:32710889:+	LMBRD2	35185	chr5:36115222:-	ONLY_REF_SPLICE	YES	29	59	0.19	0.11	0.0568	0.0227	NPR3->chr5:32689176-32791819:+,natriuretic_peptide_receptor_3,LMBRD2->LMBR1_domain_containing_2,chr5:36098514-36152063:-	HCC70_BREAST	0.11	0.19	0.0795	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	RP11-1415C14.4--TERT	3	7	RP11-1415C14.4	1188	chr5:69503385:-	TERT	10256	chr5:1294781:-	ONLY_REF_SPLICE	YES	34	0	0.23	1	0.0341	0.0796	RP11-1415C14.4->chr5:69435402-69503572:-,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	HCC70_BREAST	0.23	1	0.1137	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	RP11-1415C14.4--TERT	2	6	RP11-1415C14.4	1188	chr5:69503385:-	TERT	12996	chr5:1282739:-	ONLY_REF_SPLICE	YES	34	0	0.19	1	0.0227	0.0682	RP11-1415C14.4->chr5:69435402-69503572:-,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	HCC70_BREAST	0.19	1	0.0909	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	CLTA--PTMA	3	0	CLTA	7873	chr9:36211754:+	PTMA	18088	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	CLTA->chr9:36190853-36304778:+,clathrin_light_chain_A,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC70_BREAST	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	IFT172--FAM120AOS	2	0	IFT172	1175	chr2:27712482:-	FAM120AOS	37430	chr9:96212881:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	IFT172->chr2:27667238-27712656:-,intraflagellar_transport_172,FAM120AOS->chr9:96208776-96215874:-,family_with_sequence_similarity_120A_opposite_strand	HCC70_BREAST	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	NEK7--ASPM	2	0	NEK7	15246	chr1:198262169:+	ASPM	53132	chr1:197056102:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NEK7->NIMA_related_kinase_7,chr1:198126093-198291550:+,ASPM->Oncogene{Bushman},abnormal_spindle_microtubule_assembly,chr1:197053258-197115824:-	HCC70_BREAST	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	SBF2-AS1--NEBL	2	0	SBF2-AS1	1212	chr11:9780050:+	NEBL	50484	chr10:21101869:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SBF2-AS1->SBF2_antisense_RNA_1,chr11:9779839-9832866:+,NEBL->chr10:21068902-21463116:-,nebulette	HCC70_BREAST	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000668
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--IGH@	3716	2060	RUNX1	21108	chr21:36421139:-	IGH@	143012	chr14:106312010:-	ONLY_REF_SPLICE	YES	48	2	0.99	1	51.8498	28.7434	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,IGH@->Oncogene{Bushman}	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	80.5932	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C22orf39--MTMR3	129	59	C22orf39	21765	chr22:19363154:-	MTMR3	55669	chr22:30421619:+	ONLY_REF_SPLICE	YES	75	27	0.71	0.87	1.8	0.8232	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.87	2.6232	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS18--HTATSF1P	102	55	RPS18	1717	chr6:33240503:+	HTATSF1P	7320	chr6:33205988:+	INCL_NON_REF_SPLICE	YES	3083	9	0.05	0.95	1.4232	0.7674	LOCAL_REARRANGEMENT:+:[32320],RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18,HTATSF1P->chr6:33205576-33207467:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.95	2.1906	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RUNX1	87	45	PVT1	1202	chr8:128806980:+	RUNX1	46700	chr21:36437369:-	ONLY_REF_SPLICE	YES	33	0	0.8	1	1.2139	0.6279	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	1.8418	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF25--ANKRD11	74	26	TCF25	19312	chr16:89973730:+	ANKRD11	59561	chr16:89334452:-	INCL_NON_REF_SPLICE	YES	103	31	0.49	0.76	1.0325	0.3628	TCF25->chr16:89940000-89977792:+,transcription_factor_25,ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.76	1.3953	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--IGH@	6	236	RUNX1	21108	chr21:36421139:-	IGH@	143236	chr14:106311786:-	INCL_NON_REF_SPLICE	YES	48	631	0.83	0.28	0.0837	3.2929	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,IGH@->Oncogene{Bushman}	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.83	3.3766	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP128--GTF2A1	48	20	CEP128	13431	chr14:81362062:-	GTF2A1	45608	chr14:81682858:-	ONLY_REF_SPLICE	YES	147	96	0.32	0.41	0.6697	0.2791	{Klijn_CCL:Lymphoid=1,Lung=1},CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,GTF2A1->Oncogene{Bushman},chr14:81641796-81687721:-,general_transcription_factor_IIA_subunit_1	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.41	0.9488	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--RAB6A	45	3	ANKRD11	1317	chr16:89556653:-	RAB6A	40335	chr11:73441868:-	ONLY_REF_SPLICE	YES	0	75	1	0.39	0.6279	0.0419	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.6698	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNAZ--BMS1P20	42	11	GNAZ	3574	chr22:23438605:+	BMS1P20	16287	chr22:22673254:+	ONLY_REF_SPLICE	YES	19	43	0.74	0.55	0.586	0.1535	GNAZ->G_protein_subunit_alpha_z,chr22:23412540-23467224:+,BMS1P20->BMS1,_ribosome_biogenesis_factor_pseudogene_20,chr22:22657589-22677203:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.74	0.7395	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTMR3--C22orf39	32	14	MTMR3	22609	chr22:30418686:+	C22orf39	54398	chr22:19349454:-	ONLY_REF_SPLICE	YES	20	83	0.7	0.36	0.4465	0.1953	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.7	0.6418	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RICTOR--LIFR	27	17	RICTOR	2396	chr5:39021141:-	LIFR	50581	chr5:38530768:-	ONLY_REF_SPLICE	YES	11	3	0.8	0.94	0.3767	0.2372	RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,LIFR->Oncogene{Bushman},chr5:38475065-38608456:-,leukemia_inhibitory_factor_receptor_alpha	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.94	0.6139	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS1A--SLC7A8	29	7	ANKS1A	14911	chr6:35028030:+	SLC7A8	31993	chr14:23635749:-	ONLY_REF_SPLICE	YES	25	0	0.59	1	0.4046	0.0977	{Klijn_CCL:Lymphoid=1},ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,SLC7A8->chr14:23594504-23652883:-,solute_carrier_family_7_member_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.5023	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RUNX1	8	46	PVT1	2457	chr8:128808254:+	RUNX1	46700	chr21:36437369:-	ONLY_REF_SPLICE	YES	22	0	0.71	1	0.1116	0.6418	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.7534	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	5	41	AP003900.6	3299	chr21:11174002:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	7	0	0.87	1	0.0698	0.5721	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.6419	TRUE	0	0	0	3	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPP6--AC004485.3	14	3	MPP6	1326	chr7:24613212:+	AC004485.3	28053	chr7:24236648:-	ONLY_REF_SPLICE	YES	58	0	0.23	1	0.1953	0.0419	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,AC004485.3->chr7:24236281-24295338:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.2372	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--TCF25	12	6	ANKRD11	34573	chr16:89334709:-	TCF25	59182	chr16:89976999:+	INCL_NON_REF_SPLICE	YES	38	101	0.32	0.15	0.1674	0.0837	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,TCF25->chr16:89940000-89977792:+,transcription_factor_25	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.32	0.2511	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RUNX1	2	46	PVT1	2520	chr8:128808317:+	RUNX1	46700	chr21:36437369:-	ONLY_REF_SPLICE	YES	22	0	0.69	1	0.0279	0.6418	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.6697	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	10	3	AP003900.6	1122	chr21:11169841:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	8	0	0.62	1	0.1395	0.0419	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.1814	TRUE	0	0	0	11	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TANC1--PKP4	10	1	TANC1	2259	chr2:159857701:+	PKP4	43354	chr2:159433783:+	ONLY_REF_SPLICE	YES	4	48	0.73	0.19	0.1395	0.014	YOSHIHARA_TCGA_num_samples[BRCA:1|OV:1],{Klijn_CCL:Lung=1},TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,PKP4->chr2:159313476-159539391:+,plakophilin_4	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.73	0.1535	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--TCF25	7	10	ANKRD11	34757	chr16:89334525:-	TCF25	59182	chr16:89976999:+	INCL_NON_REF_SPLICE	YES	21	101	0.45	0.14	0.0977	0.1395	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,TCF25->chr16:89940000-89977792:+,transcription_factor_25	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.45	0.2372	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLK--DNAH5	8	3	SLK	1695	chr10:105727653:+	DNAH5	107639	chr5:13701545:-	ONLY_REF_SPLICE	YES	9	0	0.55	1	0.1116	0.0419	{Klijn_CCL:Lymphoid=1},SLK->STE20_like_kinase,chr10:105726959-105788991:+,DNAH5->chr5:13690440-13944652:-,dynein_axonemal_heavy_chain_5	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.1535	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTMR3--C22orf39	4	14	MTMR3	23395	chr22:30419472:+	C22orf39	54398	chr22:19349454:-	ONLY_REF_SPLICE	YES	26	83	0.41	0.18	0.0558	0.1953	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.41	0.2511	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKRIP1--CUX1	6	3	PRKRIP1	4162	chr7:102016769:+	CUX1	62126	chr7:101916637:+	ONLY_REF_SPLICE	YES	40	68	0.18	0.12	0.0837	0.0419	LOCAL_REARRANGEMENT:+:[77070],PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.18	0.1256	TRUE	0	0	0	3	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--IGH@	5	6	RUNX1	19385	chr21:36437233:-	IGH@	143012	chr14:106312010:-	ONLY_REF_SPLICE	YES	1	2	0.92	0.85	0.0698	0.0837	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,IGH@->Oncogene{Bushman}	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.92	0.1535	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1S--PTPN6	3	5	C1S	1111	chr12:7096461:+	PTPN6	20671	chr12:7060772:+	ONLY_REF_SPLICE	YES	4	16	0.67	0.33	0.0419	0.0698	LOCAL_REARRANGEMENT:+:[25872],C1S->chr12:7096351-7178336:+,complement_component_1,_s_subcomponent,PTPN6->Oncogene{Bushman},chr12:7055631-7070479:+,protein_tyrosine_phosphatase,_non-receptor_type_6	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.67	0.1117	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS1A--SLC7A8	3	4	ANKS1A	12374	chr6:35021942:+	SLC7A8	31993	chr14:23635749:-	ONLY_REF_SPLICE	YES	23	0	0.23	1	0.0419	0.0558	{Klijn_CCL:Lymphoid=1},ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,SLC7A8->chr14:23594504-23652883:-,solute_carrier_family_7_member_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0977	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--BMI1	4	0	IGLL5	1480	chr22:23230439:+	BMI1	10070	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOA3--MARK2	4	0	NCOA3	1163	chr20:46130763:+	MARK2	43025	chr11:63669670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRMT11--NKAIN2	4	0	TRMT11	1193	chr6:126307768:+	NKAIN2	24283	chr6:124979332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0	TRMT11->chr6:126307576-126360422:+,tRNA_methyltransferase_11_homolog,NKAIN2->Na+/K+_transporting_ATPase_interacting_2,Oncogene{Bushman},chr6:124125286-125146803:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1S--PTPN6	2	1	C1S	1111	chr12:7096461:+	PTPN6	21045	chr12:7061146:+	ONLY_REF_SPLICE	YES	4	8	0.43	0.27	0.0279	0.014	LOCAL_REARRANGEMENT:+:[25872],C1S->chr12:7096351-7178336:+,complement_component_1,_s_subcomponent,PTPN6->Oncogene{Bushman},chr12:7055631-7070479:+,protein_tyrosine_phosphatase,_non-receptor_type_6	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.43	0.0419	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAH5--SORL1	2	0	DNAH5	83285	chr5:13701393:-	SORL1	93392	chr11:121358741:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	DNAH5->chr5:13690440-13944652:-,dynein_axonemal_heavy_chain_5,SORL1->Oncogene{Bushman},chr11:121322912-121504402:+,sortilin-related_receptor,_L(DLR_class)_A_repeats_containing	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	0	0	0	11	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GOLGB1--EAF2	2	0	GOLGB1	1124	chr3:121468479:-	EAF2	37811	chr3:121563300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_INVERSION:-:+:[85428],GOLGB1->chr3:121382046-121468602:-,golgin_B1,EAF2->ELL_associated_factor_2,chr3:121554030-121605373:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFV3--SLC30A7	2	0	NDUFV3	5809	chr21:44317157:+	SLC30A7	21232	chr1:101379219:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1S--PTPN6	1	1	C1S	1111	chr12:7096461:+	PTPN6	20974	chr12:7061075:+	ONLY_REF_SPLICE	NO	4	10	0.33	0.17	0.014	0.014	LOCAL_REARRANGEMENT:+:[25872],C1S->chr12:7096351-7178336:+,complement_component_1,_s_subcomponent,PTPN6->Oncogene{Bushman},chr12:7055631-7070479:+,protein_tyrosine_phosphatase,_non-receptor_type_6	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.33	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DUSP16--LOH12CR2	1	1	DUSP16	1267	chr12:12715051:-	LOH12CR2	17276	chr12:12509739:-	ONLY_REF_SPLICE	YES	33	0	0.06	1	0.014	0.014	DUSP16->chr12:12628829-12715317:-,dual_specificity_phosphatase_16,LOH12CR2->chr12:12508342-12510001:-,loss_of_heterozygosity,_12,_chromosomal_region_2_(non-protein_coding)	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000889
SKMEL5_SKIN	C1orf43--SCAMP3	401	558	C1orf43	1793	chr1:154192312:-	SCAMP3	16578	chr1:155226582:-	ONLY_REF_SPLICE	YES	1802	698	0.35	0.58	4.6602	6.4848	{Klijn_CCL:Skin=1},C1orf43->chr1:154179182-154193104:-,chromosome_1_open_reading_frame_43,SCAMP3->chr1:155225770-155232221:-,secretory_carrier_membrane_protein_3	SKMEL5_SKIN	0.35	0.58	11.145	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	S100A11--RP11-423O2.7	270	14	S100A11	2209	chr1:152009389:-	RP11-423O2.7	8708	chr1:142952672:-	ONLY_REF_SPLICE	YES	68	0	0.81	1	3.1378	0.1627	S100A11->S100_calcium_binding_protein_A11,chr1:152004982-152020383:-,RP11-423O2.7->chr1:142950985-142956716:-	SKMEL5_SKIN	0.81	1	3.3005	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	UBE2Q1--VPS72	109	91	UBE2Q1	6808	chr1:154523873:-	VPS72	14881	chr1:151158426:-	ONLY_REF_SPLICE	YES	471	286	0.3	0.41	1.2667	1.0576	{Klijn_CCL:Skin=1},UBE2Q1->chr1:154521053-154531504:-,ubiquitin_conjugating_enzyme_E2_Q1,VPS72->chr1:151142463-151167797:-,vacuolar_protein_sorting_72_homolog	SKMEL5_SKIN	0.3	0.41	2.3243	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	CTTN--TRIM37	91	32	CTTN	15994	chr11:70275305:+	TRIM37	46114	chr17:57109451:-	ONLY_REF_SPLICE	YES	2376	89	0.05	0.58	1.0576	0.3719	CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37	SKMEL5_SKIN	0.05	0.58	1.4295	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	PPFIA1--SHANK2-AS2	71	29	PPFIA1	26844	chr11:70202360:+	SHANK2-AS2	45790	chr11:70493446:+	ONLY_REF_SPLICE	YES	402	1	0.2	0.99	0.8251	0.337	PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,SHANK2-AS2->SHANK2_antisense_RNA_2,chr11:70492270-70493667:+	SKMEL5_SKIN	0.2	0.99	1.1621	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	C1orf43--SCAMP3	1	257	C1orf43	1287	chr1:154192818:-	SCAMP3	16578	chr1:155226582:-	ONLY_REF_SPLICE	YES	1859	698	0.12	0.27	0.0116	2.9867	{Klijn_CCL:Skin=1},C1orf43->chr1:154179182-154193104:-,chromosome_1_open_reading_frame_43,SCAMP3->chr1:155225770-155232221:-,secretory_carrier_membrane_protein_3	SKMEL5_SKIN	0.12	0.27	2.9983	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	C1orf43--SCAMP3	7	179	C1orf43	1793	chr1:154192312:-	SCAMP3	16950	chr1:155226210:-	ONLY_REF_SPLICE	YES	1802	600	0.09	0.24	0.0814	2.0802	{Klijn_CCL:Skin=1},C1orf43->chr1:154179182-154193104:-,chromosome_1_open_reading_frame_43,SCAMP3->chr1:155225770-155232221:-,secretory_carrier_membrane_protein_3	SKMEL5_SKIN	0.09	0.24	2.1616	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	POMK--RP11-353N4.4	42	25	POMK	4467	chr8:42958973:+	RP11-353N4.4	12242	chr1:149676746:+	ONLY_REF_SPLICE	YES	21	0	0.76	1	0.4881	0.2905	POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,RP11-353N4.4->chr1:149672997-149677289:+	SKMEL5_SKIN	0.76	1	0.7786	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	UBE2Q1--VPS72	14	56	UBE2Q1	6434	chr1:154524247:-	VPS72	14881	chr1:151158426:-	ONLY_REF_SPLICE	YES	451	286	0.13	0.2	0.1627	0.6508	{Klijn_CCL:Skin=1},UBE2Q1->chr1:154521053-154531504:-,ubiquitin_conjugating_enzyme_E2_Q1,VPS72->chr1:151142463-151167797:-,vacuolar_protein_sorting_72_homolog	SKMEL5_SKIN	0.13	0.2	0.8135	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	RCC1--MRPL21	22	0	RCC1	2175	chr1:28834672:+	MRPL21	23606	chr11:68660923:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2557	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL21->chr11:68658744-68671303:-,mitochondrial_ribosomal_protein_L21	SKMEL5_SKIN	1	1	0.2557	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	DIXDC1--AP002884.3	12	3	DIXDC1	3694	chr11:111808283:+	AP002884.3	33023	chr11:112064197:+	ONLY_REF_SPLICE	YES	20	0	0.43	1	0.1395	0.0349	DIXDC1->DIX_domain_containing_1,chr11:111797868-111893308:+,AP002884.3->chr11:112041253-112071394:+	SKMEL5_SKIN	0.43	1	0.1744	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	S100A11--RP11-423O2.7	5	12	S100A11	2209	chr1:152009389:-	RP11-423O2.7	9746	chr1:142951557:-	ONLY_REF_SPLICE	YES	68	0	0.2	1	0.0581	0.1395	S100A11->S100_calcium_binding_protein_A11,chr1:152004982-152020383:-,RP11-423O2.7->chr1:142950985-142956716:-	SKMEL5_SKIN	0.2	1	0.1976	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	TDRKH--AL591704.7	7	2	TDRKH	5328	chr1:151753957:-	AL591704.7	17841	chr1:153369243:-	INCL_NON_REF_SPLICE	YES	25	0	0.26	1	0.0814	0.0232	TDRKH->chr1:151742583-151763892:-,tudor_and_KH_domain_containing,AL591704.7->chr1:153369067-153369247:-	SKMEL5_SKIN	0.26	1	0.1046	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	TEX2--AC037445.1	5	1	TEX2	13523	chr17:62254685:-	AC037445.1	29335	chr17:61397852:-	ONLY_REF_SPLICE	YES	89	0	0.06	1	0.0581	0.0116	TEX2->chr17:62224587-62340661:-,testis_expressed_2,AC037445.1->chr17:61271291-61416414:-	SKMEL5_SKIN	0.06	1	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	TUFT1--EFNA3	4	2	TUFT1	7530	chr1:151542246:+	EFNA3	20364	chr1:155057567:+	ONLY_REF_SPLICE	YES	19	7	0.24	0.46	0.0465	0.0232	TUFT1->chr1:151512781-151556059:+,tuftelin_1,EFNA3->chr1:155036224-155059283:+,chr1:155036224-155060014:+,ephrin_A3	SKMEL5_SKIN	0.24	0.46	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	PPFIA1--NADSYN1	4	0	PPFIA1	2737	chr11:70118542:+	NADSYN1	79695	chr11:71232136:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0465	0	PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	SKMEL5_SKIN	1	1	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	SCAPER--WDR93	2	1	SCAPER	40395	chr15:76673719:-	WDR93	53083	chr15:90244938:+	ONLY_REF_SPLICE	YES	17	0	0.15	1	0.0232	0.0116	SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-,WDR93->WD_repeat_domain_93,chr15:90234028-90286869:+	SKMEL5_SKIN	0.15	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	CPSF6--TOMM7	2	0	CPSF6	11046	chr12:69656342:+	TOMM7	21879	chr7:22857667:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TOMM7->chr7:22852251-22862470:-,translocase_of_outer_mitochondrial_membrane_7	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	31057	chr13:114202618:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	SKMEL5_SKIN	1	1	0.0232	TRUE	0	2	0	1	2	TRUE	ACH-000730
SKMEL5_SKIN	DNAJC13--DCUN1D4	2	0	DNAJC13	1235	chr3:132136604:+	DCUN1D4	61625	chr4:52714371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	GTF3C5--SURF4	2	0	GTF3C5	1476	chr9:135906551:+	SURF4	16630	chr9:136234321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTF3C5->chr9:135906076-135933890:+,general_transcription_factor_IIIC_subunit_5,SURF4->chr9:136228325-136242970:-,surfeit_4	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	HNRNPC--GOLGA8B	2	0	HNRNPC	11906	chr14:21698478:-	GOLGA8B	37066	chr15:34825163:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2),GOLGA8B->chr15:34817408-34880704:-,golgin_A8_family_member_B	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	RCC2--SFT2D2	2	0	RCC2	7482	chr1:17747210:-	SFT2D2	24524	chr1:168208369:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RCC2->Oncogene{Bushman},chr1:17733256-17766220:-,regulator_of_chromosome_condensation_2,SFT2D2->SFT2_domain_containing_2,chr1:168195176-168222263:+	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	RPS3--UMPS	2	0	RPS3	2339	chr11:75111868:+	UMPS	16749	chr3:124456415:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UMPS->chr3:124449213-124464040:+,uridine_monophosphate_synthetase	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	VMP1--CLTC	2	0	VMP1	1557	chr17:57785109:+	CLTC	24482	chr17:57721637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	{Klijn_CCL:Lung=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[10882],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	3	0	TRUE	ACH-000730
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYL1--ETS2	821	302	LYL1	1631	chr19:13213345:-	ETS2	19438	chr21:40194598:+	ONLY_REF_SPLICE	YES	796	175	0.59	0.87	7.3744	2.7126	LYL1->Oncogene{Bushman},chr19:13209847-13213975:-,lymphoblastic_leukemia_associated_hematopoiesis_regulator_1,ETS2->ETS_proto-oncogene_2,_transcription_factor,Oncogene{Bushman},chr21:40177231-40196879:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.87	10.087	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELAVL1--TYK2	830	158	ELAVL1	3505	chr19:8056528:-	TYK2	32501	chr19:10465285:-	ONLY_REF_SPLICE	YES	262	367	0.79	0.73	7.4552	1.4192	{Klijn_CCL:Lymphoid=1},ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,TYK2->chr19:10461209-10491352:-,tyrosine_kinase_2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.79	8.8744	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC5--ANKRD24	194	20	TRAPPC5	2288	chr19:7747208:+	ANKRD24	13058	chr19:4207239:+	ONLY_REF_SPLICE	YES	221	5	0.49	0.98	1.7425	0.1796	TRAPPC5->chr19:7745729-7747744:+,trafficking_protein_particle_complex_5,ANKRD24->ankyrin_repeat_domain_24,chr19:4183351-4224811:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.98	1.9221	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	109	1	ZNF121	1073	chr19:9695137:-	RFX2	26209	chr19:6047515:-	ONLY_REF_SPLICE	YES	1	3	0.99	0.97	0.9791	0.009	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.99	0.9881	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNMT1--CRTC1	78	8	DNMT1	15501	chr19:10277274:-	CRTC1	48644	chr19:18860591:+	ONLY_REF_SPLICE	YES	1184	36	0.07	0.7	0.7006	0.0719	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.7	0.7725	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC5--ANKRD24	28	35	TRAPPC5	2825	chr19:7747745:+	ANKRD24	13058	chr19:4207239:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.93	0.2515	0.3144	TRAPPC5->chr19:7745729-7747744:+,trafficking_protein_particle_complex_5,ANKRD24->ankyrin_repeat_domain_24,chr19:4183351-4224811:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.5659	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	35	1	ZNF121	1073	chr19:9695137:-	RFX2	21613	chr19:6078345:-	ONLY_REF_SPLICE	YES	1	1	0.97	0.97	0.3144	0.009	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.97	0.3234	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--AC011526.1	32	11	CTC-459F4.3	1188	chr19:28284558:+	AC011526.1	17405	chr19:41985192:-	ONLY_REF_SPLICE	YES	89	0	0.33	1	0.2874	0.0988	CTC-459F4.3->chr19:28284371-28409771:+,AC011526.1->chr19:41960074-42006559:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.3862	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	21	11	ZNF121	1348	chr19:9694862:-	RFX2	26209	chr19:6047515:-	ONLY_REF_SPLICE	YES	34	3	0.48	0.91	0.1886	0.0988	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.91	0.2874	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	11	29	ZNF121	1348	chr19:9694862:-	RFX2	21613	chr19:6078345:-	ONLY_REF_SPLICE	YES	34	1	0.54	0.98	0.0988	0.2605	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.98	0.3593	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--AC011526.1	15	7	CTC-459F4.3	1147	chr19:28284517:+	AC011526.1	17405	chr19:41985192:-	ONLY_REF_SPLICE	YES	77	0	0.22	1	0.1347	0.0629	CTC-459F4.3->chr19:28284371-28409771:+,AC011526.1->chr19:41960074-42006559:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.1976	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NLGN1--NAALADL2	16	1	NLGN1	11485	chr3:173525622:+	NAALADL2	42973	chr3:174814580:+	ONLY_REF_SPLICE	YES	5	0	0.77	1	0.1437	0.009	NLGN1->chr3:173114074-174004434:+,neuroligin_1,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.1527	TRUE	0	0	0	2	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	16	0	ZNF121	1073	chr19:9695137:-	RFX2	27307	chr19:6044293:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1437	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	15	1	CDC37	1606	chr19:10530192:-	CLEC17A	13039	chr19:14694169:+	INCL_NON_REF_SPLICE	YES	69	0	0.19	1	0.1347	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	15	1	CDC37	1075	chr19:10530723:-	CLEC17A	13039	chr19:14694169:+	ONLY_REF_SPLICE	YES	25	0	0.39	1	0.1347	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	14	1	CDC37	1606	chr19:10530192:-	CLEC17A	14117	chr19:14698426:+	INCL_NON_REF_SPLICE	YES	69	0	0.18	1	0.1258	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.1348	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC5--ANKRD24	4	37	TRAPPC5	2825	chr19:7747745:+	ANKRD24	12924	chr19:4207105:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.3323	TRAPPC5->chr19:7745729-7747744:+,trafficking_protein_particle_complex_5,ANKRD24->ankyrin_repeat_domain_24,chr19:4183351-4224811:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3682	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC5--ANKRD24	7	21	TRAPPC5	2288	chr19:7747208:+	ANKRD24	12924	chr19:4207105:+	ONLY_REF_SPLICE	YES	221	0	0.11	1	0.0629	0.1886	TRAPPC5->chr19:7745729-7747744:+,trafficking_protein_particle_complex_5,ANKRD24->ankyrin_repeat_domain_24,chr19:4183351-4224811:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.2515	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC5--ANKRD24	3	35	TRAPPC5	2910	chr19:7747830:+	ANKRD24	13058	chr19:4207239:+	INCL_NON_REF_SPLICE	NO	0	5	1	0.88	0.0269	0.3144	TRAPPC5->chr19:7745729-7747744:+,trafficking_protein_particle_complex_5,ANKRD24->ankyrin_repeat_domain_24,chr19:4183351-4224811:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.3413	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	11	1	CDC37	1606	chr19:10530192:-	CLEC17A	15195	chr19:14703093:+	INCL_NON_REF_SPLICE	YES	69	0	0.15	1	0.0988	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	11	1	CDC37	1075	chr19:10530723:-	CLEC17A	14117	chr19:14698426:+	ONLY_REF_SPLICE	YES	25	0	0.32	1	0.0988	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--AC011526.1	8	12	CTC-459F4.3	5385	chr19:28289084:+	AC011526.1	17405	chr19:41985192:-	ONLY_REF_SPLICE	YES	65	0	0.24	1	0.0719	0.1078	CTC-459F4.3->chr19:28284371-28409771:+,AC011526.1->chr19:41960074-42006559:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.1797	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	9	1	CDC37	1075	chr19:10530723:-	CLEC17A	15195	chr19:14703093:+	ONLY_REF_SPLICE	YES	25	0	0.29	1	0.0808	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0898	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENPP3--ZNF7	9	1	ENPP3	16595	chr6:132007047:+	ZNF7	33574	chr8:146054428:+	ONLY_REF_SPLICE	YES	79	0	0.11	1	0.0808	0.009	ENPP3->chr6:131949582-132068553:+,ectonucleotide_pyrophosphatase/phosphodiesterase_3,ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0898	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF69--AP001058.3	9	1	ZNF69	1203	chr19:11998801:+	AP001058.3	10429	chr21:45626673:-	ONLY_REF_SPLICE	YES	69	0	0.13	1	0.0808	0.009	ZNF69->chr19:11998599-12025144:+,zinc_finger_protein_69,AP001058.3->chr21:45626408-45627282:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0898	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNB1	8	0	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0719	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0719	TRUE	0	10	0	7	3	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC5--ANKRD24	3	13	TRAPPC5	2288	chr19:7747208:+	ANKRD24	13105	chr19:4207286:+	INCL_NON_REF_SPLICE	YES	221	10	0.07	0.62	0.0269	0.1168	TRAPPC5->chr19:7745729-7747744:+,trafficking_protein_particle_complex_5,ANKRD24->ankyrin_repeat_domain_24,chr19:4183351-4224811:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.62	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	6	1	ZNF121	1073	chr19:9695137:-	RFX2	22847	chr19:6072158:-	ONLY_REF_SPLICE	NO	1	1	0.88	0.88	0.0539	0.009	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.88	0.0629	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HOOK2--CTB-133G6.1	4	1	HOOK2	4300	chr19:12903138:-	CTB-133G6.1	22619	chr19:7427667:+	ONLY_REF_SPLICE	YES	1	106	0.83	0.05	0.0359	0.009	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,CTB-133G6.1->chr19:7413848-7448271:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.83	0.0449	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--AC011526.1	1	11	CTC-459F4.3	1660	chr19:28285030:+	AC011526.1	17405	chr19:41985192:-	ONLY_REF_SPLICE	YES	91	0	0.12	1	0.009	0.0988	CTC-459F4.3->chr19:28284371-28409771:+,AC011526.1->chr19:41960074-42006559:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	1	11	ZNF121	1348	chr19:9694862:-	RFX2	22847	chr19:6072158:-	ONLY_REF_SPLICE	NO	34	1	0.26	0.92	0.009	0.0988	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.92	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LPHN1--AP001597.1	3	2	LPHN1	4692	chr19:14281494:-	AP001597.1	25259	chr21:27875901:+	ONLY_REF_SPLICE	YES	19	0	0.21	1	0.0269	0.018	LPHN1->chr19:14260750-14316999:-,AP001597.1->chr21:27765954-27941571:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0449	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	3	1	CDC37	1673	chr19:10530125:-	CLEC17A	13039	chr19:14694169:+	INCL_NON_REF_SPLICE	YES	104	0	0.04	1	0.0269	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	3	1	CDC37	1673	chr19:10530125:-	CLEC17A	15195	chr19:14703093:+	INCL_NON_REF_SPLICE	YES	104	0	0.04	1	0.0269	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	3	1	CDC37	1673	chr19:10530125:-	CLEC17A	14117	chr19:14698426:+	INCL_NON_REF_SPLICE	YES	104	0	0.04	1	0.0269	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--AC011526.1	3	1	CTC-459F4.3	1188	chr19:28284558:+	AC011526.1	20119	chr19:41962392:-	ONLY_REF_SPLICE	YES	89	5	0.04	0.44	0.0269	0.009	CTC-459F4.3->chr19:28284371-28409771:+,AC011526.1->chr19:41960074-42006559:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.44	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BACE2--CTD-2231E14.8	3	0	BACE2	1775	chr21:42540502:+	CTD-2231E14.8	28136	chr19:16237299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	BACE2->beta-site_APP-cleaving_enzyme_2,chr21:42539728-42654445:+,CTD-2231E14.8->chr19:16234471-16250702:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CYYR1--CTB-55O6.12	3	0	CYYR1	3687	chr21:27936978:-	CTB-55O6.12	15132	chr19:14279589:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	CYYR1->chr21:27838528-27945603:-,cysteine_and_tyrosine_rich_1,CTB-55O6.12->chr19:14247991-14282079:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UCKL1--NOC4L	3	0	UCKL1	1157	chr20:62587613:-	NOC4L	19142	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	UCKL1->chr20:62571186-62587769:-,uridine-cytidine_kinase_1_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0269	TRUE	0	1	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	3	0	ZNF121	1073	chr19:9695137:-	RFX2	31836	chr19:6026248:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	1	5	ZNF121	1348	chr19:9694862:-	RFX2	27307	chr19:6044293:-	ONLY_REF_SPLICE	YES	34	29	0.15	0.17	0.009	0.0449	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.17	0.0539	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTB--FKBP8	2	0	ACTB	4493	chr7:5570155:-	FKBP8	12949	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GTEx_v2:{count=3;pct=0.03%;dist=Esophagus_-_Muscularis=2,Whole_Blood=1},ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	1	0	2	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--PGBD2	2	0	CHD2	6529	chr15:93444529:+	PGBD2	63542	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	1	0	2	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNMT1--CRTC1	2	0	DNMT1	14413	chr19:10279006:-	CRTC1	48644	chr19:18860591:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC1--DAPK2	2	0	HERC1	20443	chr15:64019846:-	DAPK2	106107	chr15:64204396:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[73094],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHDC10--UBE2H	2	0	KLHDC10	1300	chr7:129710649:+	UBE2H	26174	chr7:129519482:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GTEx&tcga_normals:1/3694=0.03%,KLHDC10->chr7:129710350-129775560:+,kelch_domain_containing_10,UBE2H->chr7:129470572-129592789:-,ubiquitin_conjugating_enzyme_E2_H	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPP5--RNF14	2	0	MPP5	12732	chr14:67770316:+	RNF14	34522	chr5:141359688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5,RNF14->chr5:141337893-141369856:+,ring_finger_protein_14	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFATC2--VAPB	2	0	NFATC2	2622	chr20:50158909:-	VAPB	32677	chr20:57019133:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	NFATC2->Oncogene{Bushman},chr20:50003494-50179370:-,nuclear_factor_of_activated_T-cells_2,VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNB1	2	0	RCC1	2175	chr1:28834672:+	GNB1	20571	chr1:1771121:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	10	0	7	3	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--MRPL3	2	0	RCC1	2175	chr1:28834672:+	MRPL3	27527	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	6	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC3A2--BZW2	2	0	SLC3A2	3261	chr11:62639141:+	BZW2	27833	chr7:16729422:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBR4--RABEP1	2	0	UBR4	75129	chr1:19426091:-	RABEP1	103738	chr17:5241314:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4,RABEP1->Oncogene{Bushman},chr17:5185558-5289129:+,rabaptin,_RAB_GTPase_binding_effector_protein_1	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	2	0	ZNF121	1073	chr19:9695137:-	RFX2	34021	chr19:6016282:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	2	0	ZNF121	1073	chr19:9695137:-	RFX2	29477	chr19:6040252:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
SKMEL31_SKIN	OSBPL9--CCDC18	118	62	OSBPL9	14631	chr1:52214070:+	CCDC18	63153	chr1:93720028:+	ONLY_REF_SPLICE	YES	79	6	0.69	0.97	1.2752	0.67	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18	SKMEL31_SKIN	0.69	0.97	1.9452	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	KCTD20--PIP5K1P1	104	0	KCTD20	15921	chr6:36457998:+	PIP5K1P1	20879	chr6:7987765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1239	0	KCTD20->chr6:36410544-36458920:+,potassium_channel_tetramerization_domain_containing_20,PIP5K1P1->chr6:7986730-7988425:+,phosphatidylinositol-4-phosphate_5-kinase_type_1_pseudogene_1	SKMEL31_SKIN	1	1	1.1239	TRUE	0	6	0	1	6	TRUE	ACH-000640
SKMEL31_SKIN	CUX1--ACHE	23	42	CUX1	25795	chr7:101840585:+	ACHE	60508	chr7:100491873:-	ONLY_REF_SPLICE	YES	86	1	0.43	0.98	0.2486	0.4539	{Klijn_CCL:Skin=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,ACHE->acetylcholinesterase_(Cartwright_blood_group),chr7:100487615-100494594:-	SKMEL31_SKIN	0.43	0.98	0.7025	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	OSBPL9--CCDC18	12	51	OSBPL9	13601	chr1:52212429:+	CCDC18	63153	chr1:93720028:+	ONLY_REF_SPLICE	YES	110	6	0.36	0.91	0.1297	0.5511	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18	SKMEL31_SKIN	0.36	0.91	0.6808	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	CUX1--ACHE	12	44	CUX1	25795	chr7:101840585:+	ACHE	60505	chr7:100491876:-	ONLY_REF_SPLICE	YES	86	1	0.39	0.98	0.1297	0.4755	{Klijn_CCL:Skin=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,ACHE->acetylcholinesterase_(Cartwright_blood_group),chr7:100487615-100494594:-	SKMEL31_SKIN	0.39	0.98	0.6052	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	CUX1--ACHE	16	21	CUX1	24123	chr7:101838883:+	ACHE	60508	chr7:100491873:-	ONLY_REF_SPLICE	YES	104	1	0.26	0.97	0.1729	0.2269	{Klijn_CCL:Skin=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,ACHE->acetylcholinesterase_(Cartwright_blood_group),chr7:100487615-100494594:-	SKMEL31_SKIN	0.26	0.97	0.3998	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	CUX1--ACHE	13	21	CUX1	24123	chr7:101838883:+	ACHE	60505	chr7:100491876:-	ONLY_REF_SPLICE	YES	104	1	0.25	0.97	0.1405	0.2269	{Klijn_CCL:Skin=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,ACHE->acetylcholinesterase_(Cartwright_blood_group),chr7:100487615-100494594:-	SKMEL31_SKIN	0.25	0.97	0.3674	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	NR3C1--CTD-2201G3.1	11	6	NR3C1	10508	chr5:142779221:-	CTD-2201G3.1	28573	chr5:112764357:+	ONLY_REF_SPLICE	YES	22	0	0.44	1	0.1189	0.0648	NR3C1->chr5:142657496-142815077:-,nuclear_receptor_subfamily_3_group_C_member_1,CTD-2201G3.1->chr5:112658725-112772871:+	SKMEL31_SKIN	0.44	1	0.1837	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	OSBPL9--CCDC18	8	18	OSBPL9	14631	chr1:52214070:+	CCDC18	64297	chr1:93721892:+	ONLY_REF_SPLICE	YES	79	32	0.25	0.45	0.0865	0.1945	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18	SKMEL31_SKIN	0.25	0.45	0.281	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	PDIA4--GAPDH	11	0	PDIA4	6407	chr7:148709365:-	GAPDH	18610	chr12:6646518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1189	0	PDIA4->chr7:148700154-148725733:-,protein_disulfide_isomerase_family_A_member_4,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SKMEL31_SKIN	1	1	0.1189	TRUE	0	0	0	2	0	TRUE	ACH-000640
SKMEL31_SKIN	RBM22--CTD-2201G3.1	8	1	RBM22	7860	chr5:150073638:-	CTD-2201G3.1	16433	chr5:112764357:+	ONLY_REF_SPLICE	YES	30	0	0.23	1	0.0865	0.0108	RBM22->RNA_binding_motif_protein_22,chr5:150070356-150080669:-,CTD-2201G3.1->chr5:112658725-112772871:+	SKMEL31_SKIN	0.23	1	0.0973	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	SRPK2--PUS7	5	5	SRPK2	7398	chr7:104909253:-	PUS7	46953	chr7:105099706:-	ONLY_REF_SPLICE	YES	59	46	0.14	0.18	0.054	0.054	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	SKMEL31_SKIN	0.14	0.18	0.108	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	TIMP3--GAPDH	6	0	TIMP3	5583	chr22:33255354:+	GAPDH	16479	chr12:6647336:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0648	0	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SKMEL31_SKIN	1	1	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	OSBPL9--CCDC18	2	13	OSBPL9	13601	chr1:52212429:+	CCDC18	64297	chr1:93721892:+	ONLY_REF_SPLICE	YES	110	32	0.12	0.32	0.0216	0.1405	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18	SKMEL31_SKIN	0.12	0.32	0.1621	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	SRPK2--PUS7	4	5	SRPK2	2897	chr7:105029095:-	PUS7	46953	chr7:105099706:-	ONLY_REF_SPLICE	YES	52	46	0.15	0.16	0.0432	0.054	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	SKMEL31_SKIN	0.15	0.16	0.0972	TRUE	0	2	0	2	1	TRUE	ACH-000640
SKMEL31_SKIN	NR3C1--RBM22	3	0	NR3C1	10508	chr5:142779221:-	RBM22	32965	chr5:150073802:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	{Klijn_CCL:Skin=1},NR3C1->chr5:142657496-142815077:-,nuclear_receptor_subfamily_3_group_C_member_1,RBM22->RNA_binding_motif_protein_22,chr5:150070356-150080669:-	SKMEL31_SKIN	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	CHCHD2--MPRIP	2	0	CHCHD2	2463	chr7:56171919:-	MPRIP	16600	chr17:17039533:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	CHCHD2->chr7:56169262-56174269:-,coiled-coil-helix-coiled-coil-helix_domain_containing_2,MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein	SKMEL31_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	FN1--SERPINE2	2	0	FN1	27876	chr2:216256355:-	SERPINE2	65227	chr2:224849667:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2	SKMEL31_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	AC074363.1--B3GALT1	1	2	AC074363.1	1164	chr2:168149844:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0216	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	SKMEL31_SKIN	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000640
OSRC2_KIDNEY	TGFA--ADD2	260	78	TGFA	3064	chr2:70741991:-	ADD2	23393	chr2:70933574:-	ONLY_REF_SPLICE	YES	320	0	0.51	1	2.7368	0.821	LOCAL_REARRANGEMENT:-:[53425],TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha,ADD2->adducin_2,chr2:70834750-70995357:-	OSRC2_KIDNEY	0.51	1	3.5578	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	MTAP--SLC24A2	50	9	MTAP	7556	chr9:21818201:+	SLC24A2	25156	chr9:19622297:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.5263	0.0947	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2	OSRC2_KIDNEY	0.98	1	0.621	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	HPCAL1--C2orf48	25	1	HPCAL1	5356	chr2:10537046:+	C2orf48	19658	chr2:10350437:+	ONLY_REF_SPLICE	YES	61	0	0.3	1	0.2632	0.0105	LOCAL_REARRANGEMENT:+:[91164],HPCAL1->chr2:10443015-10567743:+,hippocalcin_like_1,C2orf48->chr2:10281509-10351851:+,chromosome_2_open_reading_frame_48	OSRC2_KIDNEY	0.3	1	0.2737	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	TGFA--ADD2	4	72	TGFA	3064	chr2:70741991:-	ADD2	23401	chr2:70933566:-	INCL_NON_REF_SPLICE	YES	320	0	0.19	1	0.0421	0.7579	LOCAL_REARRANGEMENT:-:[53425],TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha,ADD2->adducin_2,chr2:70834750-70995357:-	OSRC2_KIDNEY	0.19	1	0.8	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	SHISA9--CTD-2135D7.2	10	0	SHISA9	4767	chr16:13003719:+	CTD-2135D7.2	22825	chr16:14027076:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1053	0	SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,CTD-2135D7.2->chr16:14024534-14029492:-	OSRC2_KIDNEY	1	1	0.1053	TRUE	0	1	0	2	1	TRUE	ACH-000159
OSRC2_KIDNEY	SHISA9--CTD-2135D7.2	8	0	SHISA9	4771	chr16:13003723:+	CTD-2135D7.2	22809	chr16:14027092:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,CTD-2135D7.2->chr16:14024534-14029492:-	OSRC2_KIDNEY	1	1	0.0842	TRUE	0	1	0	2	1	TRUE	ACH-000159
OSRC2_KIDNEY	TGFA--ADD2	3	19	TGFA	1466	chr2:70780860:-	ADD2	23393	chr2:70933574:-	ONLY_REF_SPLICE	NO	65	0	0.25	1	0.0316	0.2	LOCAL_REARRANGEMENT:-:[53425],TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha,ADD2->adducin_2,chr2:70834750-70995357:-	OSRC2_KIDNEY	0.25	1	0.2316	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	FRMD4A--FAM107B	4	2	FRMD4A	4125	chr10:14372057:-	FAM107B	61917	chr10:14572514:-	ONLY_REF_SPLICE	YES	37	17	0.14	0.26	0.0421	0.0211	LOCAL_REARRANGEMENT:-:[56415],FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-,FAM107B->chr10:14560556-14816896:-,family_with_sequence_similarity_107_member_B	OSRC2_KIDNEY	0.14	0.26	0.0632	TRUE	0	1	0	3	1	TRUE	ACH-000159
OSRC2_KIDNEY	JUND--ELL	3	2	JUND	2167	chr19:18391266:-	ELL	16813	chr19:18557624:-	ONLY_REF_SPLICE	YES	6	12	0.45	0.29	0.0316	0.0211	JUND->JunD_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr19:18390563-18392432:-,ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II	OSRC2_KIDNEY	0.29	0.45	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	PKM--SERPINE1	3	0	PKM	11638	chr15:72501030:-	SERPINE1	31278	chr7:100780935:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	OSRC2_KIDNEY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	ANKRD11--TCF25	2	0	ANKRD11	4629	chr16:89484692:-	TCF25	41676	chr16:89949759:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,TCF25->chr16:89940000-89977792:+,transcription_factor_25	OSRC2_KIDNEY	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	RAD51--RP11-169D4.2	1	1	RAD51	7249	chr15:41001314:+	RP11-169D4.2	17196	chr11:72298845:+	ONLY_REF_SPLICE	YES	41	0	0.05	1	0.0105	0.0105	RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+,RP11-169D4.2->chr11:72295616-72299023:+	OSRC2_KIDNEY	0.05	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000159
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTR10--KIAA0586	30	25	ACTR10	2288	chr14:58669645:+	KIAA0586	58331	chr14:59006789:+	ONLY_REF_SPLICE	YES	74	20	0.43	0.73	0.4358	0.3631	ACTR10->actin-related_protein_10_homolog,chr14:58666798-58701750:+,KIAA0586->KIAA0586,chr14:58894103-59015216:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.73	0.7989	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTR10--KIAA0586	20	20	ACTR10	2288	chr14:58669645:+	KIAA0586	60482	chr14:59014499:+	ONLY_REF_SPLICE	YES	74	24	0.35	0.62	0.2905	0.2905	ACTR10->actin-related_protein_10_homolog,chr14:58666798-58701750:+,KIAA0586->KIAA0586,chr14:58894103-59015216:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.62	0.581	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAF4--TIAM1	17	9	SCAF4	16796	chr21:33057362:-	TIAM1	47725	chr21:32525452:-	ONLY_REF_SPLICE	YES	72	11	0.27	0.7	0.2469	0.1307	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.7	0.3776	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV8-4--TRAC	2	65	TRAV8-4	1174	chr14:22362786:+	TRAC	4599	chr14:23016447:+	ONLY_REF_SPLICE	YES	844	0	0.07	1	0.0291	0.9441	HGNC_GENEFAM,TRAV8-4->T_cell_receptor_alpha_variable_8-4,chr14:22362613-22363210:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.9732	TRUE	1	0	0	2	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBOAT7--FXYD5	17	4	MBOAT7	8425	chr19:54682482:-	FXYD5	19505	chr19:35651612:+	ONLY_REF_SPLICE	YES	77	212	0.21	0.09	0.2469	0.0581	MBOAT7->chr19:54677107-54693733:-,membrane_bound_O-acyltransferase_domain_containing_7,FXYD5->FXYD_domain_containing_ion_transport_regulator_5,Oncogene{Bushman},chr19:35645633-35660786:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.21	0.305	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	9	9	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	24	0	0.43	1	0.1307	0.1307	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.2614	TRUE	0	8	0	10	8	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL589743.1--RP11-536C10.17	9	8	AL589743.1	9393	chr14:19680685:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	196	0	0.08	1	0.1307	0.1162	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.2469	TRUE	0	8	0	6	8	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00977--CCDC26	10	0	LINC00977	1074	chr8:130253423:-	CCDC26	10659	chr8:130411930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1453	0	LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1453	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	6	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0872	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0872	TRUE	0	5	0	18	5	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL589743.1--RP11-536C10.17	4	7	AL589743.1	3600	chr14:19654004:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	220	0	0.05	1	0.0581	0.1017	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.1598	TRUE	0	1	0	2	1	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	4	7	AP000525.9	3590	chr22:16189032:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	172	0	0.06	1	0.0581	0.1017	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.1598	TRUE	0	0	0	3	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRCA2--PDS5B	4	2	BRCA2	18217	chr13:32921033:+	PDS5B	63959	chr13:33306238:+	ONLY_REF_SPLICE	YES	20	30	0.23	0.17	0.0581	0.0291	BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+,PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.23	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC146--PTPN12	4	2	CCDC146	4759	chr7:76871217:+	PTPN12	30577	chr7:77200395:+	ONLY_REF_SPLICE	YES	4	1	0.6	0.86	0.0581	0.0291	CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146,PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.86	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00977--CCDC26	3	0	LINC00977	2223	chr8:130235467:-	CCDC26	10659	chr8:130411930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SETD3--CCDC85C	3	0	SETD3	1152	chr14:99947065:-	CCDC85C	27600	chr14:100002425:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:-:[30387],SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--RP11-298J20.4	2	0	AC131097.3	5844	chr2:242908198:+	RP11-298J20.4	11631	chr10:126631026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	AC131097.3->chr2:242823514-243020873:+,RP11-298J20.4->chr10:126605712-126631450:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--SHARPIN	2	0	CHD2	6529	chr15:93444529:+	SHARPIN	63137	chr8:145158128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SHARPIN->SHANK_associated_RH_domain_interactor,chr8:145153536-145163027:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUX1--UBE2D3	2	0	CUX1	6304	chr7:101559505:+	UBE2D3	60905	chr4:103747793:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--IVNS1ABP	2	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	1	4	0	16	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD20A18P--ANKRD20A9P	1	2	ANKRD20A18P	1203	chr21:15436848:+	ANKRD20A9P	8947	chr13:19435684:-	ONLY_REF_SPLICE	NO	3	2	0.5	0.6	0.0145	0.0291	NUCLCLUST,ANKRD20A18P->ankyrin_repeat_domain_20_family_member_A18,_pseudogene,chr21:15436646-15441408:+,ANKRD20A9P->ankyrin_repeat_domain_20_family_member_A9,_pseudogene,chr13:19390858-19446107:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.6	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD20A18P--ANKRD20A9P	1	1	ANKRD20A18P	2654	chr21:15441408:+	ANKRD20A9P	9978	chr13:19433013:-	ONLY_REF_SPLICE	YES	0	3	1	0.4	0.0145	0.0145	NUCLCLUST,ANKRD20A18P->ankyrin_repeat_domain_20_family_member_A18,_pseudogene,chr21:15436646-15441408:+,ANKRD20A9P->ankyrin_repeat_domain_20_family_member_A9,_pseudogene,chr13:19390858-19446107:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.029	TRUE	0	1	0	1	1	TRUE	ACH-000995
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLSTN1--MRPL51	178	36	CLSTN1	3007	chr1:9833330:-	MRPL51	23512	chr12:6602138:-	ONLY_REF_SPLICE	YES	43	479	0.83	0.31	1.7607	0.3561	{Klijn_CCL:Lymphoid=1},CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,MRPL51->chr12:6601150-6603007:-,mitochondrial_ribosomal_protein_L51	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.83	2.1168	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLRA3--SPIDR	45	21	GLRA3	1574	chr4:175749892:-	SPIDR	47822	chr8:48586363:+	ONLY_REF_SPLICE	YES	14	51	0.82	0.56	0.4451	0.2077	GLRA3->chr4:175558065-175750465:-,glycine_receptor_alpha_3,SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	0.82	0.6528	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPIDR--FER1L6	14	11	SPIDR	18759	chr8:48511758:+	FER1L6	76480	chr8:125107137:+	ONLY_REF_SPLICE	YES	52	0	0.32	1	0.1385	0.1088	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.2473	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLSTN1--MRPL51	7	13	CLSTN1	3007	chr1:9833330:-	MRPL51	24017	chr12:6601633:-	ONLY_REF_SPLICE	YES	43	359	0.32	0.05	0.0692	0.1286	{Klijn_CCL:Lymphoid=1},CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,MRPL51->chr12:6601150-6603007:-,mitochondrial_ribosomal_protein_L51	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.32	0.1978	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPIDR--FER1L6	7	7	SPIDR	18759	chr8:48511758:+	FER1L6	77623	chr8:125109512:+	ONLY_REF_SPLICE	YES	52	4	0.21	0.78	0.0692	0.0692	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.78	0.1384	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--EEF1D	5	0	IGLL5	1480	chr22:23230439:+	EEF1D	18462	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0	{Klijn_CCL:Lymphoid=1},IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0495	TRUE	1	4	0	2	1	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SERPINB5	4	2	IGH@	95370	chr14:106329408:-	SERPINB5	133334	chr18:61151655:+	ONLY_REF_SPLICE	YES	165	0	0.04	1	0.0396	0.0198	IGH@->Oncogene{Bushman},SERPINB5->Oncogene{Bushman},chr18:61143994-61172318:+,serpin_family_B_member_5	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--UBC	4	0	EEF2	2323	chr19:3984145:-	UBC	16943	chr12:125397363:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	GTEx&tcga_normals:4/3694=0.11%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--UBC	4	0	EEF2	2323	chr19:3984145:-	UBC	17627	chr12:125396679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	GTEx&tcga_normals:4/3694=0.11%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--UBC	4	0	EEF2	2323	chr19:3984145:-	UBC	17399	chr12:125396907:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	GTEx&tcga_normals:4/3694=0.11%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--IGHV3-29	3	0	CPSF6	11046	chr12:69656342:+	IGHV3-29	20032	chr14:106787666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IGHV3-29->chr14:106787368-106787804:-,immunoglobulin_heavy_variable_3-29_(pseudogene)	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	TRUE	0	0	0	3	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL3--EEF2	3	0	RPL3	3820	chr22:39713575:-	EEF2	16810	chr19:3980016:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx&tcga_normals:6/3694=0.16%,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	TRUE	0	0	0	3	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MICAL3--PEX26	2	1	MICAL3	17825	chr22:18368644:-	PEX26	87699	chr22:18604246:+	ONLY_REF_SPLICE	YES	45	2	0.06	0.6	0.0198	0.0099	LOCAL_INVERSION:-:+:[53364],MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,PEX26->chr22:18560689-18613905:+,peroxisomal_biogenesis_factor_26	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.6	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX21--EXOSC1	2	0	DDX21	9484	chr10:70730106:+	EXOSC1	28903	chr10:99197507:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	DDX21->DEAD-box_helicase_21,chr10:70715884-70744829:+,EXOSC1->chr10:99195899-99205774:-,exosome_component_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK6--PUS1	2	0	DOCK6	30772	chr19:11319362:-	PUS1	45272	chr12:132423718:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	DOCK6->chr19:11309971-11373157:-,dedicator_of_cytokinesis_6,PUS1->chr12:132413745-132428406:+,pseudouridylate_synthase_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--NARF	2	0	FOXK2	3931	chr17:80521424:+	NARF	38758	chr17:80443373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	LOCAL_REARRANGEMENT:+:[29176],FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNL3--NEK4	2	0	GNL3	3816	chr3:52721631:+	NEK4	26428	chr3:52775515:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[16292],GNL3->G_protein_nucleolar_3,chr3:52715172-52728508:+,NEK4->NIMA_related_kinase_4,chr3:52744800-52804965:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	3	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MFSD8--NRIP1	2	0	MFSD8	1924	chr4:128886227:-	NRIP1	20302	chr21:16415895:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	MFSD8->chr4:128838960-128887150:-,major_facilitator_superfamily_domain_containing_8,NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NBR2--STAT5B	2	0	NBR2	1161	chr17:41277787:+	STAT5B	14978	chr17:40384155:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	NBR2->chr17:41277627-41305688:+,neighbor_of_BRCA1_gene_2_(non-protein_coding),STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	P4HA1--NIPBL	2	0	P4HA1	1209	chr10:74856524:-	NIPBL	34112	chr5:36984778:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1,NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIAL1--HSP90AB1	2	0	TIAL1	1596	chr10:121355946:-	HSP90AB1	23070	chr6:44220782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMSB10--VRK1	2	0	TMSB10	1094	chr2:85132842:+	VRK1	20468	chr14:97397668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2K--PRRC2C	2	0	UBE2K	5683	chr4:39776553:+	PRRC2C	52685	chr1:171557518:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPIDR--FER1L6	1	3	SPIDR	18759	chr8:48511758:+	FER1L6	78137	chr8:125110026:+	ONLY_REF_SPLICE	NO	52	16	0.07	0.2	0.0099	0.0297	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.2	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000124
NCIH1930_LUNG	TLK2--CA10	129	76	TLK2	12803	chr17:60601692:+	CA10	51331	chr17:49731097:-	ONLY_REF_SPLICE	YES	74	0	0.73	1	1.7462	1.0287	{Klijn_CCL:Lung=1},TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	NCIH1930_LUNG	0.73	1	2.7749	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	ANO6--RP11-463H12.2	53	34	ANO6	1405	chr12:45610174:+	RP11-463H12.2	37212	chr4:55820486:+	ONLY_REF_SPLICE	YES	169	0	0.34	1	0.7174	0.4602	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-463H12.2->chr4:55809796-55822985:+	NCIH1930_LUNG	0.34	1	1.1776	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	TLK2--CA10	30	42	TLK2	11707	chr17:60600538:+	CA10	51331	chr17:49731097:-	ONLY_REF_SPLICE	YES	78	0	0.48	1	0.4061	0.5685	{Klijn_CCL:Lung=1},TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	NCIH1930_LUNG	0.48	1	0.9746	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	PHRF1--IFITM2	35	10	PHRF1	2697	chr11:582081:+	IFITM2	21516	chr11:308231:+	ONLY_REF_SPLICE	YES	97	4	0.32	0.92	0.4738	0.1354	PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,IFITM2->chr11:307631-315272:+,interferon_induced_transmembrane_protein_2	NCIH1930_LUNG	0.32	0.92	0.6092	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	ANO6--RP11-463H12.2	18	40	ANO6	3574	chr12:45664307:+	RP11-463H12.2	37212	chr4:55820486:+	ONLY_REF_SPLICE	YES	173	0	0.25	1	0.2437	0.5414	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-463H12.2->chr4:55809796-55822985:+	NCIH1930_LUNG	0.25	1	0.7851	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	MTX2--KIAA1919	19	18	MTX2	1275	chr2:177134397:+	KIAA1919	16461	chr6:111583460:+	ONLY_REF_SPLICE	YES	389	13	0.09	0.74	0.2572	0.2437	MTX2->chr2:177134123-177202753:+,metaxin_2,KIAA1919->chr6:111580551-111592370:+	NCIH1930_LUNG	0.09	0.74	0.5009	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	TLK2--CA10	3	78	TLK2	12803	chr17:60601692:+	CA10	50077	chr17:49739206:-	ONLY_REF_SPLICE	YES	74	0	0.52	1	0.0406	1.0558	{Klijn_CCL:Lung=1},TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	NCIH1930_LUNG	0.52	1	1.0964	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	ANO6--RP11-463H12.2	19	9	ANO6	1405	chr12:45610174:+	RP11-463H12.2	38398	chr4:55822808:+	ONLY_REF_SPLICE	YES	169	24	0.14	0.54	0.2572	0.1218	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-463H12.2->chr4:55809796-55822985:+	NCIH1930_LUNG	0.14	0.54	0.379	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	ANO6--RP11-463H12.2	9	37	ANO6	2511	chr12:45622056:+	RP11-463H12.2	37212	chr4:55820486:+	ONLY_REF_SPLICE	YES	167	0	0.22	1	0.1218	0.5008	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-463H12.2->chr4:55809796-55822985:+	NCIH1930_LUNG	0.22	1	0.6226	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	FAM214A--CYP19A1	11	8	FAM214A	3459	chr15:52970203:-	CYP19A1	35603	chr15:51535147:-	ONLY_REF_SPLICE	YES	6	4	0.76	0.83	0.1489	0.1083	FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A,CYP19A1->Oncogene{Bushman},chr15:51500254-51630807:-,cytochrome_P450_family_19_subfamily_A_member_1	NCIH1930_LUNG	0.76	0.83	0.2572	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	TEN1--UNK	8	4	TEN1	3872	chr17:73982365:+	UNK	15113	chr17:73805841:+	ONLY_REF_SPLICE	YES	74	71	0.14	0.14	0.1083	0.0541	{Klijn_CCL:Lung=1},TEN1->TEN1_CST_complex_subunit,chr17:73975301-73996667:+,UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger	NCIH1930_LUNG	0.14	0.14	0.1624	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	MTX2--KIAA1919	3	19	MTX2	2025	chr2:177135147:+	KIAA1919	16461	chr6:111583460:+	ONLY_REF_SPLICE	YES	446	13	0.05	0.63	0.0406	0.2572	MTX2->chr2:177134123-177202753:+,metaxin_2,KIAA1919->chr6:111580551-111592370:+	NCIH1930_LUNG	0.05	0.63	0.2978	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	AC027612.3--AP000345.1	7	2	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	7	0	0.56	1	0.0948	0.0271	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH1930_LUNG	0.56	1	0.1219	TRUE	0	0	0	11	0	TRUE	ACH-000870
NCIH1930_LUNG	PHRF1--IFITM2	4	13	PHRF1	2697	chr11:582081:+	IFITM2	21029	chr11:307744:+	INCL_NON_REF_SPLICE	YES	97	0	0.15	1	0.0541	0.176	PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,IFITM2->chr11:307631-315272:+,interferon_induced_transmembrane_protein_2	NCIH1930_LUNG	0.15	1	0.2301	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	PHRF1--IFITM2	5	2	PHRF1	1107	chr11:576592:+	IFITM2	21516	chr11:308231:+	ONLY_REF_SPLICE	YES	19	4	0.27	0.64	0.0677	0.0271	PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,IFITM2->chr11:307631-315272:+,interferon_induced_transmembrane_protein_2	NCIH1930_LUNG	0.27	0.64	0.0948	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	PHRF1--IFITM2	2	7	PHRF1	2222	chr11:581606:+	IFITM2	21516	chr11:308231:+	ONLY_REF_SPLICE	YES	161	4	0.05	0.69	0.0271	0.0948	PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,IFITM2->chr11:307631-315272:+,interferon_induced_transmembrane_protein_2	NCIH1930_LUNG	0.05	0.69	0.1219	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	ACTB--FSCN1	3	0	ACTB	4493	chr7:5570155:-	FSCN1	14341	chr7:5642888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	LOCAL_INVERSION:-:+:[29024],ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1	NCIH1930_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	NLGN4X--RP11-733O18.1	3	0	NLGN4X	2998	chrX:6144907:-	RP11-733O18.1	24670	chrX:5587647:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	NLGN4X->chrX:5758678-6146904:-,neuroligin_4,_X-linked,RP11-733O18.1->chrX:5571462-5644346:-	NCIH1930_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	AC005307.3--AC005616.1	2	0	AC005307.3	5855	chr19:29212861:-	AC005616.1	22332	chr19:28983930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	AC005307.3->chr19:28926295-29218684:-,AC005616.1->chr19:28982771-29123635:-	NCIH1930_LUNG	1	1	0.0271	TRUE	0	2	0	3	2	TRUE	ACH-000870
NCIH1930_LUNG	CPSF6--VAC14	2	0	CPSF6	11046	chr12:69656342:+	VAC14	42831	chr16:70721993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,VAC14->Oncogene{Bushman},Vac14,_PIKFYVE_complex_component,chr16:70721342-70835064:-	NCIH1930_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	JARID2--RNF182	2	0	JARID2	1289	chr6:15246815:+	RNF182	31113	chr6:13974441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,RNF182->chr6:13924677-13980533:+,ring_finger_protein_182	NCIH1930_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	NOS1AP--FCRLB	2	0	NOS1AP	2581	chr1:162124266:+	FCRLB	27591	chr1:161695611:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NOS1AP->chr1:162039564-162353321:+,nitric_oxide_synthase_1_adaptor_protein,FCRLB->Fc_receptor_like_B,chr1:161691353-161697933:+	NCIH1930_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	RCBTB2--LINC00441	2	0	RCBTB2	5348	chr13:49089341:-	LINC00441	21444	chr13:48876628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	RCBTB2->RCC1_and_BTB_domain_containing_protein_2,chr13:49063095-49107369:-,LINC00441->chr13:48870649-48877797:-,long_intergenic_non-protein_coding_RNA_441	NCIH1930_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	RNF212--CTBP1	2	0	RNF212	6789	chr4:1090553:-	CTBP1	25519	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[97886],RNF212->chr4:1050038-1107350:-,ring_finger_protein_212,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1930_LUNG	1	1	0.0271	TRUE	1	6	0	5	1	TRUE	ACH-000870
NCIH1930_LUNG	SGSM2--GNAS	2	0	SGSM2	2324	chr17:2246914:+	GNAS	38459	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	SGSM2->chr17:2240792-2284352:+,small_G_protein_signaling_modulator_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1930_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	TCF4--RANBP9	2	0	TCF4	19714	chr18:53070685:-	RANBP9	59154	chr6:13697128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	TCF4->chr18:52889562-53332018:-,transcription_factor_4,RANBP9->RAN_binding_protein_9,chr6:13621730-13711796:-	NCIH1930_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	AC027612.3--AP000345.1	1	2	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	NO	2	0	0.6	1	0.0135	0.0271	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH1930_LUNG	0.6	1	0.0406	TRUE	0	0	0	11	0	TRUE	ACH-000870
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	1337	661	NPM1	4640	chr5:170818803:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	4701	0	0.3	1	17.8796	8.8395	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	26.7191	TRUE	0	0	0	6	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCMH1--NPM1	255	21	SCMH1	1096	chr1:41707731:-	NPM1	31152	chr5:170819714:+	ONLY_REF_SPLICE	YES	0	4504	1	0.06	3.4101	0.2808	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	3.6909	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YTHDF2--TAF12	128	74	YTHDF2	7260	chr1:29070498:+	TAF12	14624	chr1:28948677:-	ONLY_REF_SPLICE	YES	112	2	0.64	0.99	1.7117	0.9896	LOCAL_INVERSION:+:-:[93536],YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.99	2.7013	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFYVE27--C10orf76	54	29	ZFYVE27	4832	chr10:99504672:+	C10orf76	42220	chr10:103649247:-	ONLY_REF_SPLICE	YES	98	32	0.46	0.72	0.7221	0.3878	ZFYVE27->chr10:99496878-99520664:+,zinc_finger_FYVE-type_containing_27,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.72	1.1099	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EWSR1--EMID1	11	0	EWSR1	1341	chr22:29664338:+	EMID1	30309	chr22:29627009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1471	0	LOCAL_REARRANGEMENT:+:[8412],EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,EMID1->EMI_domain_containing_1,chr22:29601840-29655586:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1471	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFYVE27--C10orf76	7	10	ZFYVE27	2403	chr10:99498431:+	C10orf76	42220	chr10:103649247:-	ONLY_REF_SPLICE	YES	132	32	0.11	0.35	0.0936	0.1337	ZFYVE27->chr10:99496878-99520664:+,zinc_finger_FYVE-type_containing_27,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.35	0.2273	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EWSR1--EMID1	7	0	EWSR1	1341	chr22:29664338:+	EMID1	29245	chr22:29622479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0936	0	LOCAL_REARRANGEMENT:+:[8412],EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,EMID1->EMI_domain_containing_1,chr22:29601840-29655586:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0936	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--RHOA	3	0	C17orf76-AS1	1593	chr17:16342728:+	RHOA	16477	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0401	0	C17orf76-AS1->chr17:16342136-16381992:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0401	TRUE	0	0	0	4	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TDRD9--CTD-2134A5.3	3	0	TDRD9	4779	chr14:104422107:+	CTD-2134A5.3	42550	chr14:104343732:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0401	0	LOCAL_REARRANGEMENT:+:[50984],TDRD9->chr14:104394799-104519004:+,tudor_domain_containing_9,CTD-2134A5.3->chr14:104341392-104343815:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABHD14B--GNB1	2	0	ABHD14B	2875	chr3:52007981:-	GNB1	12396	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	ABHD14B->abhydrolase_domain_containing_14B,chr3:52002526-52017425:-,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--TMEM237	2	0	PROSC	2996	chr8:37623873:+	TMEM237	28917	chr2:202489045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),TMEM237->chr2:202484907-202508293:-,transmembrane_protein_237	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB3GAP1--R3HDM1	2	0	RAB3GAP1	1221	chr2:135810055:+	R3HDM1	38095	chr2:136360070:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	RAB3GAP1->RAB3_GTPase_activating_protein_catalytic_subunit_1,chr2:135809835-135933964:+,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000773
SW1088_CENTRAL_NERVOUS_SYSTEM	ITGA4--AC068196.1	8	3	ITGA4	16541	chr2:182363504:+	AC068196.1	36971	chr2:181941351:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.1567	0.0587	ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,AC068196.1->chr2:181940778-181970695:-	SW1088_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.2154	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	AKT3--GPM6A	5	0	AKT3	13142	chr1:243858893:-	GPM6A	53083	chr4:176622918:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0979	0	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,GPM6A->chr4:176554085-176923815:-,glycoprotein_M6A	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0979	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	NDFIP1--RAVER1	4	0	NDFIP1	11587	chr5:141531466:+	RAVER1	23386	chr19:10431872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0	NDFIP1->Nedd4_family_interacting_protein_1,chr5:141488070-141534005:+,RAVER1->chr19:10426888-10444316:-,ribonucleoprotein,_PTB_binding_1	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	PRRC2B--TNS3	4	0	PRRC2B	34814	chr9:134371929:+	TNS3	85895	chr7:47314953:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,TNS3->chr7:47314752-47622156:-,tensin_3	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	SMEK1--RECQL	4	0	SMEK1	17994	chr14:91924549:-	RECQL	30929	chr12:21628722:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0	SMEK1->chr14:91923955-91976898:-,RECQL->Oncogene{Bushman},RecQ_like_helicase,chr12:21621845-21654603:-	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	CAPRIN1--POGZ	3	0	CAPRIN1	1954	chr11:34074183:+	POGZ	29523	chr1:151414681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0587	0	CAPRIN1->cell_cycle_associated_protein_1,chr11:34073230-34122703:+,POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	CLTB--NCOR1	3	0	CLTB	6883	chr5:175824608:-	NCOR1	45298	chr17:15983327:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	CLTB->chr5:175819456-175843570:-,clathrin_light_chain_B,NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	CYB5A--RPL14	3	0	CYB5A	3257	chr18:71930585:-	RPL14	17644	chr3:40503106:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	CYB5A->chr18:71920530-71959251:-,cytochrome_b5_type_A,RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	HIP1--VASP	3	0	HIP1	15702	chr7:75190671:-	VASP	42936	chr19:46024583:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	HIP1->Oncogene{Bushman},chr7:75162621-75368280:-,huntingtin_interacting_protein_1,VASP->chr19:46009837-46030241:+,vasodilator-stimulated_phosphoprotein	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	HNRNPU--FAM207A	3	0	HNRNPU	11994	chr1:245016851:-	FAM207A	21986	chr21:46386978:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	HNRNPU->chr1:245014468-245027844:-,heterogeneous_nuclear_ribonucleoprotein_U_(scaffold_attachment_factor_A),FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	MPRIP--FOXRED2	3	0	MPRIP	46162	chr17:17104963:+	FOXRED2	60021	chr22:36885492:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,FOXRED2->FAD_dependent_oxidoreductase_domain_containing_2,chr22:36883237-36903148:-	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	S100A6--SP1	3	0	S100A6	2607	chr1:153507114:-	SP1	7130	chr12:53775443:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	SLC1A5--DYNC1LI2	3	0	SLC1A5	9676	chr19:47278326:-	DYNC1LI2	13091	chr16:66785473:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,DYNC1LI2->chr16:66754796-66785701:-,dynein_cytoplasmic_1_light_intermediate_chain_2	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	SPTBN1--MSN	3	0	SPTBN1	23096	chr2:54858238:+	MSN	68294	chrX:64957105:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,MSN->Oncogene{Bushman},chrX:64808257-64961791:+,moesin	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	C7orf10--PSMA2	2	0	C7orf10	20736	chr7:40789096:+	PSMA2	29643	chr7:42967058:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	C7orf10->chr7:40174575-40900362:+,PSMA2->chr7:42948872-42971773:-,chr7:42956460-42971822:-,proteasome_subunit_alpha_2	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	CDC42SE2--AFF4	2	0	CDC42SE2	5200	chr5:130599859:+	AFF4	27885	chr5:132240096:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,AFF4->AF4/FMR2_family_member_4,Oncogene{Bushman},chr5:132211071-132299326:-	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	CHCHD1--SLC12A2	2	0	CHCHD1	1395	chr10:75542199:+	SLC12A2	7552	chr5:127448506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	CHCHD1->chr10:75541805-75543410:+,coiled-coil-helix-coiled-coil-helix_domain_containing_1,SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	COA1--RPE	2	0	COA1	1289	chr7:43769028:-	RPE	28206	chr2:210874381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,RPE->chr2:210867289-210886300:+,ribulose-5-phosphate-3-epimerase	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	DECR1--YTHDF3	2	0	DECR1	8619	chr8:91033284:+	YTHDF3	28252	chr8:64122241:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	DECR1->2,4-dienoyl-CoA_reductase_1,_mitochondrial,chr8:91013633-91064320:+,YTHDF3->YTH_N6-methyladenosine_RNA_binding_protein_3,chr8:64081112-64125346:+	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	FKBP1A--PBX1	2	0	FKBP1A	1329	chr20:1373478:-	PBX1	56696	chr1:164853779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	LPIN1--KLHL24	2	0	LPIN1	11617	chr2:11907984:+	KLHL24	55432	chr3:183396874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LPIN1->chr2:11817721-11967535:+,lipin_1,KLHL24->chr3:183353356-183402265:+,kelch_like_family_member_24	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	LRRC59--EIF4A3	2	0	LRRC59	5125	chr17:48469759:-	EIF4A3	19368	chr17:78113939:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	LRRC59->chr17:48452420-48474914:-,leucine_rich_repeat_containing_59,EIF4A3->chr17:78109013-78120982:-,eukaryotic_translation_initiation_factor_4A3	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	NHP2L1--AP1B1	2	0	NHP2L1	2186	chr22:42084798:-	AP1B1	31176	chr22:29730399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	NHP2L1->chr22:42069934-42086508:-,AP1B1->adaptor_related_protein_complex_1_beta_1_subunit,chr22:29723669-29819168:-	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	PLXNA4--EXOC4	2	0	PLXNA4	7628	chr7:132174051:-	EXOC4	57107	chr7:132990631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	GTEx&tcga_normals:1/3694=0.03%,PLXNA4->chr7:131808091-132333447:-,plexin_A4,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	PTGR1--FRG1	2	0	PTGR1	4736	chr9:114355206:-	FRG1	24170	chr4:190876192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1,FRG1->FSHD_region_gene_1,chr4:190861943-190884359:+	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	RCC1--GNB2L1	2	0	RCC1	2175	chr1:28834672:+	GNB2L1	22715	chr5:180669345:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	1	0	1	1	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	SAR1B--PRIMPOL	2	0	SAR1B	7839	chr5:133956623:-	PRIMPOL	35267	chr4:185606566:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	SAR1B->chr5:133936834-133984961:-,secretion_associated_Ras_related_GTPase_1B,PRIMPOL->chr4:185570767-185616117:+,primase_and_DNA_directed_polymerase	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	STK39--FUS	2	0	STK39	16851	chr2:168869144:-	FUS	30867	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	TNRC6A--PSMB1	2	0	TNRC6A	1606	chr16:24741621:+	PSMB1	37773	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	TNRC6A->chr16:24741016-24838953:+,trinucleotide_repeat_containing_6A,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	UBE2K--ADD1	2	0	UBE2K	1347	chr4:39700010:+	ADD1	26109	chr4:2895740:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,ADD1->adducin_1,chr4:2845584-2931803:+	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	ZMYM6--PSMD1	2	0	ZMYM6	8510	chr1:35480298:-	PSMD1	36563	chr2:231941748:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	ZMYM6->chr1:35447134-35497342:-,chr1:35449523-35497569:-,zinc_finger_MYM-type_containing_6,PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
HSC4_UPPER_AERODIGESTIVE_TRACT	FBXO34--C14orf39	12	20	FBXO34	1235	chr14:55738255:+	C14orf39	30060	chr14:60908849:-	ONLY_REF_SPLICE	YES	65	0	0.33	1	0.1379	0.2298	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,C14orf39->chr14:60863187-60982261:-,chromosome_14_open_reading_frame_39	HSC4_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.3677	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	HDAC1--RP5-1180C18.1	10	7	HDAC1	3583	chr1:32782383:+	RP5-1180C18.1	16077	chr1:37741860:-	ONLY_REF_SPLICE	YES	164	0	0.09	1	0.1149	0.0804	HDAC1->chr1:32757687-32799236:+,histone_deacetylase_1,RP5-1180C18.1->chr1:37728340-37790701:-	HSC4_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.1953	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	FBXO34--C14orf39	9	8	FBXO34	1235	chr14:55738255:+	C14orf39	33210	chr14:60900131:-	ONLY_REF_SPLICE	YES	65	0	0.21	1	0.1034	0.0919	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,C14orf39->chr14:60863187-60982261:-,chromosome_14_open_reading_frame_39	HSC4_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.1953	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	AC092594.1--CNTN1	7	0	AC092594.1	2337	chr2:19505584:-	CNTN1	22580	chr12:41289752:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0804	0	AC092594.1->chr2:19167729-19546509:-,CNTN1->chr12:41086244-41466220:+,contactin_1	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0804	TRUE	0	1	0	1	1	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	FOXO1--RP11-172E9.2	4	1	FOXO1	2015	chr13:41239720:-	RP11-172E9.2	12287	chr13:40924439:-	INCL_NON_REF_SPLICE	YES	27	0	0.16	1	0.046	0.0115	FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,RP11-172E9.2->chr13:40918094-40924440:-	HSC4_UPPER_AERODIGESTIVE_TRACT	0.16	1	0.0575	TRUE	0	0	0	3	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	DHX35--PPP1R16B	3	2	DHX35	5539	chr20:37617560:+	PPP1R16B	30346	chr20:37464468:+	ONLY_REF_SPLICE	YES	50	0	0.09	1	0.0345	0.023	LOCAL_REARRANGEMENT:+:[39275],DHX35->DEAH-box_helicase_35,chr20:37590942-37668366:+,PPP1R16B->Oncogene{Bushman},chr20:37434348-37551667:+,protein_phosphatase_1_regulatory_subunit_16B	HSC4_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	HDAC1--RP5-1180C18.1	3	0	HDAC1	3583	chr1:32782383:+	RP5-1180C18.1	18346	chr1:37728555:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	HDAC1->chr1:32757687-32799236:+,histone_deacetylase_1,RP5-1180C18.1->chr1:37728340-37790701:-	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	NOTCH2NL--RHOA	2	0	NOTCH2NL	1318	chr1:145209436:+	RHOA	20430	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	STAG2--XIAP	2	0	STAG2	1655	chrX:123094716:+	XIAP	50132	chrX:123022469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	LOCAL_REARRANGEMENT:+:[46233],STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,XIAP->X-linked_inhibitor_of_apoptosis,chrX:122993574-123047829:+	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	ZNF131--CCDC152	2	0	ZNF131	15576	chr5:43139411:+	CCDC152	34461	chr5:42796931:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	ZNF131->chr5:43065278-43192123:+,zinc_finger_protein_131,CCDC152->chr5:42756903-42802462:+,coiled-coil_domain_containing_152	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	DPH5--SLC25A24P1	1	3	DPH5	4639	chr1:101487197:-	SLC25A24P1	26130	chr1:108918448:+	ONLY_REF_SPLICE	YES	51	0	0.07	1	0.0115	0.0345	DPH5->chr1:101455179-101491644:-,diphthamide_biosynthesis_5,SLC25A24P1->SLC25A24_pseudogene_1,chr1:108815565-108918572:+	HSC4_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.046	TRUE	0	0	0	1	0	TRUE	ACH-000546
MFE319_ENDOMETRIUM	C22orf39--UFD1L	338	219	C22orf39	1855	chr22:19434901:-	UFD1L	40186	chr22:19445662:-	ONLY_REF_SPLICE	YES	82	353	0.87	0.61	5.516	3.574	LOCAL_REARRANGEMENT:-:[1678],C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,UFD1L->chr22:19437433-19466738:-,ubiquitin_fusion_degradation_1_like_(yeast)	MFE319_ENDOMETRIUM	0.61	0.87	9.09	TRUE	0	1	0	2	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	MROH1--EXOSC4	182	53	MROH1	4066	chr8:145218751:+	EXOSC4	42866	chr8:145135145:+	ONLY_REF_SPLICE	YES	42	151	0.85	0.61	2.9702	0.8649	LOCAL_REARRANGEMENT:+:[67369],MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,EXOSC4->chr8:145133529-145135550:+,exosome_component_4	MFE319_ENDOMETRIUM	0.61	0.85	3.8351	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	KIAA1671--SGSM1	83	1	KIAA1671	1043	chr22:25348739:+	SGSM1	56346	chr22:25301072:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	1.3545	0.0163	LOCAL_REARRANGEMENT:+:[25152],KIAA1671->KIAA1671,chr22:25348697-25593415:+,SGSM1->chr22:25202236-25323545:+,small_G_protein_signaling_modulator_1	MFE319_ENDOMETRIUM	0.99	1	1.3708	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	C22orf39--UFD1L	3	222	C22orf39	3234	chr22:19431535:-	UFD1L	40186	chr22:19445662:-	INCL_NON_REF_SPLICE	YES	78	353	0.74	0.39	0.049	3.623	LOCAL_REARRANGEMENT:-:[1678],C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,UFD1L->chr22:19437433-19466738:-,ubiquitin_fusion_degradation_1_like_(yeast)	MFE319_ENDOMETRIUM	0.39	0.74	3.672	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	C22orf39--UFD1L	49	1	C22orf39	1568	chr22:19435188:-	UFD1L	40186	chr22:19445662:-	ONLY_REF_SPLICE	YES	0	353	1	0.12	0.7997	0.0163	LOCAL_REARRANGEMENT:-:[1678],C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,UFD1L->chr22:19437433-19466738:-,ubiquitin_fusion_degradation_1_like_(yeast)	MFE319_ENDOMETRIUM	0.12	1	0.816	TRUE	0	1	0	2	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	C22orf39--UFD1L	5	122	C22orf39	1855	chr22:19434901:-	UFD1L	41255	chr22:19444441:-	ONLY_REF_SPLICE	YES	82	243	0.61	0.34	0.0816	1.991	LOCAL_REARRANGEMENT:-:[1678],C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,UFD1L->chr22:19437433-19466738:-,ubiquitin_fusion_degradation_1_like_(yeast)	MFE319_ENDOMETRIUM	0.34	0.61	2.0726	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	UTRN--STX11	25	12	UTRN	2292	chr6:144613043:+	STX11	92330	chr6:144507760:+	ONLY_REF_SPLICE	YES	16	2	0.7	0.95	0.408	0.1958	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[97330],UTRN->chr6:144606837-145174170:+,utrophin,STX11->chr6:144471663-144509507:+,syntaxin_11	MFE319_ENDOMETRIUM	0.7	0.95	0.6038	TRUE	1	1	0	1	1	TRUE	ACH-000988
MFE319_ENDOMETRIUM	STK3--NIPAL2	22	15	STK3	14445	chr8:99761504:-	NIPAL2	40319	chr8:99266315:-	ONLY_REF_SPLICE	YES	13	3	0.74	0.93	0.359	0.2448	STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,NIPAL2->NIPA_like_domain_containing_2,chr8:99202061-99306621:-	MFE319_ENDOMETRIUM	0.74	0.93	0.6038	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	KIF26B--EFCAB2	8	5	KIF26B	2699	chr1:245319985:+	EFCAB2	40668	chr1:245222688:+	ONLY_REF_SPLICE	YES	13	14	0.5	0.48	0.1306	0.0816	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	MFE319_ENDOMETRIUM	0.48	0.5	0.2122	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	ERBB4--AC079610.1	6	0	ERBB4	1393	chr2:213403173:-	AC079610.1	50458	chr2:213446132:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0979	0	LOCAL_REARRANGEMENT:-:[42516],ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,AC079610.1->chr2:213446081-213886269:-	MFE319_ENDOMETRIUM	1	1	0.0979	TRUE	0	2	0	3	2	TRUE	ACH-000988
MFE319_ENDOMETRIUM	KIF26B--EFCAB2	4	1	KIF26B	1503	chr1:245318789:+	EFCAB2	40668	chr1:245222688:+	ONLY_REF_SPLICE	YES	20	14	0.2	0.26	0.0653	0.0163	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	MFE319_ENDOMETRIUM	0.2	0.26	0.0816	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	UTRN--STX11	2	5	UTRN	1121	chr6:144606957:+	STX11	92330	chr6:144507760:+	ONLY_REF_SPLICE	YES	8	2	0.47	0.78	0.0326	0.0816	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[97330],UTRN->chr6:144606837-145174170:+,utrophin,STX11->chr6:144471663-144509507:+,syntaxin_11	MFE319_ENDOMETRIUM	0.47	0.78	0.1142	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	KIF26B--EFCAB2	2	3	KIF26B	2699	chr1:245319985:+	EFCAB2	42779	chr1:245245385:+	ONLY_REF_SPLICE	YES	13	14	0.28	0.26	0.0326	0.049	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	MFE319_ENDOMETRIUM	0.26	0.28	0.0816	TRUE	0	1	0	1	1	TRUE	ACH-000988
MFE319_ENDOMETRIUM	ALCAM--CBLB	2	0	ALCAM	1573	chr3:105086325:+	CBLB	29981	chr3:105586435:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:+:-:[78561],ALCAM->activated_leukocyte_cell_adhesion_molecule,chr3:105085753-105295744:+,CBLB->Cbl_proto-oncogene_B,Oncogene{Bushman},chr3:105374305-105588396:-	MFE319_ENDOMETRIUM	1	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	ATP6V0E1--ERGIC1	2	0	ATP6V0E1	2256	chr5:172421825:+	ERGIC1	15393	chr5:172336670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[31072],ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+,ERGIC1->chr5:172261278-172379688:+,endoplasmic_reticulum-golgi_intermediate_compartment_1	MFE319_ENDOMETRIUM	1	1	0.0326	TRUE	0	0	0	2	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	KIAA1671--SGSM1	2	0	KIAA1671	1043	chr22:25348739:+	SGSM1	58539	chr22:25313625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[25152],KIAA1671->KIAA1671,chr22:25348697-25593415:+,SGSM1->chr22:25202236-25323545:+,small_G_protein_signaling_modulator_1	MFE319_ENDOMETRIUM	1	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	PRR14L--YWHAH	2	0	PRR14L	1148	chr22:32145979:-	YWHAH	28929	chr22:32352126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	PRR14L->chr22:32072242-32146126:-,proline_rich_14_like,YWHAH->chr22:32340447-32353590:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_eta	MFE319_ENDOMETRIUM	1	1	0.0326	TRUE	0	1	0	2	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	SHROOM3--CCNI	2	0	SHROOM3	6004	chr4:77507622:+	CCNI	34951	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx&tcga_normals:1/3694=0.03%,SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,CCNI->chr4:77968311-77997158:-,cyclin_I	MFE319_ENDOMETRIUM	1	1	0.0326	TRUE	0	1	0	3	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	CD97--ADAMTS10	1	2	CD97	2045	chr19:14492357:+	ADAMTS10	35591	chr19:8645886:-	ONLY_REF_SPLICE	NO	34	0	0.08	1	0.0163	0.0326	CD97->Oncogene{Bushman},chr19:14491313-14519537:+,ADAMTS10->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_10,chr19:8645126-8675620:-	MFE319_ENDOMETRIUM	0.08	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	USP30--RP11-181C3.1	1	2	USP30	8883	chr12:109494596:+	RP11-181C3.1	24904	chr12:98896390:-	ONLY_REF_SPLICE	YES	31	0	0.09	1	0.0163	0.0326	USP30->chr12:109460894-109525831:+,ubiquitin_specific_peptidase_30,RP11-181C3.1->chr12:98879322-98897633:-	MFE319_ENDOMETRIUM	0.09	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	USP30--RP11-181C3.1	1	2	USP30	8883	chr12:109494596:+	RP11-181C3.1	25934	chr12:98887262:-	ONLY_REF_SPLICE	YES	31	0	0.09	1	0.0163	0.0326	USP30->chr12:109460894-109525831:+,ubiquitin_specific_peptidase_30,RP11-181C3.1->chr12:98879322-98897633:-	MFE319_ENDOMETRIUM	0.09	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	KIAA1671--SGSM1	1	1	KIAA1671	1043	chr22:25348739:+	SGSM1	57429	chr22:25308610:+	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0163	0.0163	LOCAL_REARRANGEMENT:+:[25152],KIAA1671->KIAA1671,chr22:25348697-25593415:+,SGSM1->chr22:25202236-25323545:+,small_G_protein_signaling_modulator_1	MFE319_ENDOMETRIUM	0.5	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	USP30--RP11-181C3.1	1	1	USP30	5742	chr12:109490566:+	RP11-181C3.1	25934	chr12:98887262:-	ONLY_REF_SPLICE	YES	39	0	0.05	1	0.0163	0.0163	USP30->chr12:109460894-109525831:+,ubiquitin_specific_peptidase_30,RP11-181C3.1->chr12:98879322-98897633:-	MFE319_ENDOMETRIUM	0.05	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000988
PANC0203_PANCREAS	THRAP3--AGO3	199	49	THRAP3	3151	chr1:36725085:+	AGO3	40472	chr1:36520547:+	ONLY_REF_SPLICE	YES	102	18	0.71	0.93	1.6992	0.4184	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+	PANC0203_PANCREAS	0.71	0.93	2.1176	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	RP3-449O17.1--KIAA1671	73	29	RP3-449O17.1	5950	chr22:38776375:-	KIAA1671	34761	chr22:25566787:+	ONLY_REF_SPLICE	YES	16	29	0.86	0.78	0.6233	0.2476	RP3-449O17.1->chr22:38731767-38794934:-,KIAA1671->KIAA1671,chr22:25348697-25593415:+	PANC0203_PANCREAS	0.78	0.86	0.8709	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MAPK1--LL22NC03-63E9.3	63	27	MAPK1	15441	chr22:22112989:-	LL22NC03-63E9.3	23707	chr22:22905268:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.5379	0.2305	MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1,LL22NC03-63E9.3->chr22:22901750-22909007:+	PANC0203_PANCREAS	0.97	1	0.7684	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	CABIN1--CSNK1E	39	13	CABIN1	1537	chr22:24408178:+	CSNK1E	59738	chr22:38699253:-	ONLY_REF_SPLICE	YES	26	37	0.67	0.58	0.333	0.111	CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	PANC0203_PANCREAS	0.58	0.67	0.444	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	AKAP13--GOLGA6L3	27	3	AKAP13	20334	chr15:86129054:+	GOLGA6L3	65979	chr15:85785451:+	ONLY_REF_SPLICE	YES	21	0	0.59	1	0.2305	0.0256	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,GOLGA6L3->chr15:85783703-85790410:+,golgin_A6_family-like_3	PANC0203_PANCREAS	0.59	1	0.2561	TRUE	1	0	1	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	ADRBK2--AC011718.2	25	1	ADRBK2	8839	chr22:26070495:+	AC011718.2	36587	chr22:20654340:-	ONLY_REF_SPLICE	YES	69	0	0.27	1	0.2135	0.0085	ADRBK2->adrenergic,_beta,_receptor_kinase_2,chr22:25960816-26125261:+,AC011718.2->chr22:20632023-20661407:-	PANC0203_PANCREAS	0.27	1	0.222	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	CABIN1--CSNK1E	24	1	CABIN1	1176	chr22:24407817:+	CSNK1E	59738	chr22:38699253:-	ONLY_REF_SPLICE	YES	0	37	1	0.4	0.2049	0.0085	CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	PANC0203_PANCREAS	0.4	1	0.2134	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	THRAP3--TEKT2	20	5	THRAP3	3151	chr1:36725085:+	TEKT2	20888	chr1:36550471:+	ONLY_REF_SPLICE	YES	102	0	0.2	1	0.1708	0.0427	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,TEKT2->chr1:36549676-36553876:+,tektin_2	PANC0203_PANCREAS	0.2	1	0.2135	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	RP11-561C5.4--RP11-815J21.2	19	5	RP11-561C5.4	1317	chr15:85777710:-	RP11-815J21.2	11002	chr15:86123073:-	INCL_NON_REF_SPLICE	YES	17	5	0.59	0.83	0.1622	0.0427	RP11-561C5.4->chr15:85747141-85778026:-,RP11-815J21.2->chr15:86122277-86123409:-	PANC0203_PANCREAS	0.59	0.83	0.2049	TRUE	0	1	1	1	1	TRUE	ACH-000042
PANC0203_PANCREAS	THRAP3--AGO3	17	10	THRAP3	3151	chr1:36725085:+	AGO3	41163	chr1:36521238:+	ONLY_REF_SPLICE	YES	102	20	0.21	0.57	0.1452	0.0854	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+	PANC0203_PANCREAS	0.21	0.57	0.2306	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MAPK1--LL22NC03-63E9.3	7	23	MAPK1	15423	chr22:22113007:-	LL22NC03-63E9.3	23707	chr22:22905268:+	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.0598	0.1964	MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1,LL22NC03-63E9.3->chr22:22901750-22909007:+	PANC0203_PANCREAS	0.86	1	0.2562	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	RP3-449O17.1--KIAA1671	5	29	RP3-449O17.1	7229	chr22:38765991:-	KIAA1671	34761	chr22:25566787:+	ONLY_REF_SPLICE	YES	14	29	0.71	0.54	0.0427	0.2476	RP3-449O17.1->chr22:38731767-38794934:-,KIAA1671->KIAA1671,chr22:25348697-25593415:+	PANC0203_PANCREAS	0.54	0.71	0.2903	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	RP3-449O17.1--KIAA1671	7	4	RP3-449O17.1	1150	chr22:38794785:-	KIAA1671	34761	chr22:25566787:+	ONLY_REF_SPLICE	YES	4	29	0.73	0.28	0.0598	0.0342	RP3-449O17.1->chr22:38731767-38794934:-,KIAA1671->KIAA1671,chr22:25348697-25593415:+	PANC0203_PANCREAS	0.28	0.73	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MAPK1--LL22NC03-63E9.3	3	5	MAPK1	8745	chr22:22123484:-	LL22NC03-63E9.3	23707	chr22:22905268:+	ONLY_REF_SPLICE	YES	170	0	0.04	1	0.0256	0.0427	MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1,LL22NC03-63E9.3->chr22:22901750-22909007:+	PANC0203_PANCREAS	0.04	1	0.0683	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	THRAP3--AGO3	3	0	THRAP3	3151	chr1:36725085:+	AGO3	56149	chr1:36536224:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+	PANC0203_PANCREAS	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	ABCC3--CHMP6	2	0	ABCC3	22144	chr17:48755580:+	CHMP6	34803	chr17:78968381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+,CHMP6->charged_multivesicular_body_protein_6,chr17:78965398-78983317:+	PANC0203_PANCREAS	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	ADAP1--GET4	2	0	ADAP1	9672	chr7:959605:-	GET4	25015	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=5;pct=0.06%;dist=Small_Intestine_-_Terminal_Ileum=1,Nerve_-_Tibial=1,Whole_Blood=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[1467],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	PANC0203_PANCREAS	1	1	0.0171	TRUE	1	1	0	4	0	TRUE	ACH-000042
PANC0203_PANCREAS	GFOD2--RANBP10	2	0	GFOD2	1259	chr16:67753066:-	RANBP10	21140	chr16:67778358:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	LOCAL_REARRANGEMENT:-:[3681],GFOD2->chr16:67708434-67753324:-,glucose-fructose_oxidoreductase_domain_containing_2,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	PANC0203_PANCREAS	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	PPP3CA--HSPA9	2	0	PPP3CA	16896	chr4:101961639:-	HSPA9	34623	chr5:137895780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	PANC0203_PANCREAS	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	TYMS--SET	2	0	TYMS	4286	chr18:662320:+	SET	17850	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PANC0203_PANCREAS	1	1	0.0171	TRUE	0	0	0	3	0	TRUE	ACH-000042
PANC0203_PANCREAS	ZNF74--ADRBK2	2	0	ZNF74	1548	chr22:20748952:+	ADRBK2	13551	chr22:26000344:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	ZNF74->chr22:20748405-20762745:+,zinc_finger_protein_74,ADRBK2->adrenergic,_beta,_receptor_kinase_2,chr22:25960816-26125261:+	PANC0203_PANCREAS	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000042
SKCO1_LARGE_INTESTINE	LRBA--SH3D19	53	22	LRBA	12939	chr4:151826990:-	SH3D19	99683	chr4:152043359:-	ONLY_REF_SPLICE	YES	33	92	0.69	0.45	0.656	0.2723	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},YOSHIHARA_TCGA_num_samples[BLCA:1|HNSC:1|LUSC:1],{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[87024],LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,SH3D19->SH3_domain_containing_19,chr4:152023903-152246784:-	SKCO1_LARGE_INTESTINE	0.45	0.69	0.9283	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	GPR39--C2orf27A	47	9	GPR39	1378	chr2:133174524:+	C2orf27A	14050	chr2:132508206:+	INCL_NON_REF_SPLICE	YES	40	0	0.58	1	0.5817	0.1114	GPR39->G_protein-coupled_receptor_39,chr2:133174147-133404132:+,C2orf27A->chr2:132479948-132524973:+,chromosome_2_open_reading_frame_27A	SKCO1_LARGE_INTESTINE	0.58	1	0.6931	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	FOXP1--LINC00877	31	7	FOXP1	15873	chr3:71348971:-	LINC00877	51642	chr3:72149161:-	ONLY_REF_SPLICE	YES	15	0	0.72	1	0.3837	0.0866	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,LINC00877->chr3:72084451-72291716:-,long_intergenic_non-protein_coding_RNA_877	SKCO1_LARGE_INTESTINE	0.72	1	0.4703	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	BAIAP2L1--CBLN4	16	3	BAIAP2L1	1267	chr7:98030114:-	CBLN4	23577	chr20:54575903:-	ONLY_REF_SPLICE	YES	23	0	0.45	1	0.198	0.0371	{Klijn_CCL:Colo-Rectal=1},BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,CBLN4->cerebellin_4_precursor,chr20:54572496-54580528:-	SKCO1_LARGE_INTESTINE	0.45	1	0.2351	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	GPR39--C2orf27A	12	19	GPR39	2325	chr2:133175471:+	C2orf27A	14050	chr2:132508206:+	ONLY_REF_SPLICE	YES	48	0	0.39	1	0.1485	0.2352	GPR39->G_protein-coupled_receptor_39,chr2:133174147-133404132:+,C2orf27A->chr2:132479948-132524973:+,chromosome_2_open_reading_frame_27A	SKCO1_LARGE_INTESTINE	0.39	1	0.3837	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	GPR39--C2orf27A	5	10	GPR39	1685	chr2:133174831:+	C2orf27A	14050	chr2:132508206:+	INCL_NON_REF_SPLICE	YES	69	0	0.18	1	0.0619	0.1238	GPR39->G_protein-coupled_receptor_39,chr2:133174147-133404132:+,C2orf27A->chr2:132479948-132524973:+,chromosome_2_open_reading_frame_27A	SKCO1_LARGE_INTESTINE	0.18	1	0.1857	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	AP000350.4--PKM	5	4	AP000350.4	3774	chr22:24236611:-	PKM	7428	chr15:72523509:-	INCL_NON_REF_SPLICE	YES	0	25	1	0.26	0.0619	0.0495	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SKCO1_LARGE_INTESTINE	0.26	1	0.1114	TRUE	0	0	0	14	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	AP000350.4--PKM	4	5	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	23	1	0.28	0.0495	0.0619	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SKCO1_LARGE_INTESTINE	0.28	1	0.1114	TRUE	0	0	0	14	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	FOXP1--LINC00877	1	5	FOXP1	7464	chr3:71408301:-	LINC00877	51642	chr3:72149161:-	ONLY_REF_SPLICE	YES	9	0	0.4	1	0.0124	0.0619	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,LINC00877->chr3:72084451-72291716:-,long_intergenic_non-protein_coding_RNA_877	SKCO1_LARGE_INTESTINE	0.4	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	CFL1--SNRPB	2	0	CFL1	6251	chr11:65623406:-	SNRPB	21897	chr20:2442439:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	CFL1->chr11:65590493-65629497:-,cofilin_1,SNRPB->chr20:2442280-2451499:-,small_nuclear_ribonucleoprotein_polypeptides_B_and_B1	SKCO1_LARGE_INTESTINE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	FOXP1--LINC00877	1	4	FOXP1	15873	chr3:71348971:-	LINC00877	55971	chr3:72110245:-	ONLY_REF_SPLICE	YES	15	4	0.25	0.56	0.0124	0.0495	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,LINC00877->chr3:72084451-72291716:-,long_intergenic_non-protein_coding_RNA_877	SKCO1_LARGE_INTESTINE	0.25	0.56	0.0619	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	GRHL2--YWHAZ	2	0	GRHL2	1358	chr8:102505017:+	YWHAZ	32633	chr8:101937267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	SKCO1_LARGE_INTESTINE	1	1	0.0248	TRUE	0	0	0	2	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	NIPBL--CDH18	2	0	NIPBL	1420	chr5:36877280:+	CDH18	72425	chr5:19544114:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,CDH18->cadherin_18,chr5:19473060-20575982:-	SKCO1_LARGE_INTESTINE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	RPL30--LAPTM4B	2	0	RPL30	2527	chr8:99057171:-	LAPTM4B	17876	chr8:98863625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	SKCO1_LARGE_INTESTINE	1	1	0.0248	TRUE	0	1	0	5	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	TRNAU1AP--TAF12	1	1	TRNAU1AP	1653	chr1:28880249:+	TAF12	17350	chr1:28948677:-	ONLY_REF_SPLICE	NO	20	4	0.09	0.33	0.0124	0.0124	LOCAL_INVERSION:+:-:[10784],TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	SKCO1_LARGE_INTESTINE	0.09	0.33	0.0248	TRUE	0	0	0	2	0	TRUE	ACH-000400
HCC1806_BREAST	TAX1BP1--AHCY	579	53	TAX1BP1	1939	chr7:27779888:+	AHCY	34968	chr20:32883391:-	ONLY_REF_SPLICE	YES	56	227	0.92	0.74	4.3627	0.3993	TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+,AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-	HCC1806_BREAST	0.74	0.92	4.762	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MIR205HG--DNAJC27-AS1	543	0	MIR205HG	1269	chr1:209602433:+	DNAJC27-AS1	13925	chr2:25251418:+	ONLY_REF_SPLICE	YES	0	0	1	1	4.0914	0	HGNC_GENEFAM,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,DNAJC27-AS1->DNAJC27_antisense_RNA_1,chr2:25194259-25262563:+	HCC1806_BREAST	1	1	4.0914	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	RFT1--UQCRC2	403	126	RFT1	10737	chr3:53137969:-	UQCRC2	30713	chr16:21982846:+	ONLY_REF_SPLICE	YES	43	228	0.92	0.7	3.0365	0.9494	{Klijn_CCL:Breast=1},RFT1->RFT1_homolog,chr3:53122499-53164478:-,UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II	HCC1806_BREAST	0.7	0.92	3.9859	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	KRT5--HNRNPA1P48	400	2	KRT5	6489	chr12:52908983:-	HNRNPA1P48	11083	chr16:51680636:+	INCL_NON_REF_SPLICE	YES	1360	164	0.23	0.71	3.0139	0.0151	KRT5->chr12:52908359-52914471:-,keratin_5,HNRNPA1P48->chr16:51679667-51681043:+,heterogeneous_nuclear_ribonucleoprotein_A1_pseudogene_48	HCC1806_BREAST	0.23	0.71	3.029	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CDCA5--AY269186.1	255	103	CDCA5	1801	chr11:64850836:-	AY269186.1	11765	chr3:65642:+	ONLY_REF_SPLICE	YES	33	0	0.92	1	1.9214	0.7761	CDCA5->cell_division_cycle_associated_5,chr11:64833772-64851636:-,AY269186.1->chr3:65431-66175:+	HCC1806_BREAST	0.92	1	2.6975	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	SMURF2--CEP112	150	9	SMURF2	3361	chr17:62602720:-	CEP112	68147	chr17:63637183:-	ONLY_REF_SPLICE	YES	5	49	0.97	0.76	1.1302	0.0678	SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	HCC1806_BREAST	0.76	0.97	1.198	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	POLA2--CAPN1	88	32	POLA2	7760	chr11:65047097:+	CAPN1	35831	chr11:64975526:+	ONLY_REF_SPLICE	YES	48	819	0.71	0.13	0.6631	0.2411	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[49756],POLA2->chr11:65029233-65073060:+,polymerase_(DNA)_alpha_2,_accessory_subunit,CAPN1->calpain_1,chr11:64948037-64979477:+	HCC1806_BREAST	0.13	0.71	0.9042	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	LDLRAD3--TCP11L1	91	14	LDLRAD3	3412	chr11:36057799:+	TCP11L1	23499	chr11:33078661:+	ONLY_REF_SPLICE	YES	21	6	0.83	0.95	0.6857	0.1055	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,TCP11L1->chr11:33060963-33127489:+,t-complex_11_like_1	HCC1806_BREAST	0.83	0.95	0.7912	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	WNK1--CWC22	80	26	WNK1	2732	chr12:863490:+	CWC22	46384	chr2:180853371:-	ONLY_REF_SPLICE	YES	41	98	0.72	0.52	0.6028	0.1959	{Klijn_CCL:Breast=1},WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,CWC22->CWC22_homolog,_spliceosome-associated_protein,chr2:180809603-180871840:-	HCC1806_BREAST	0.52	0.72	0.7987	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	SMURF2--CEP112	72	15	SMURF2	3361	chr17:62602720:-	CEP112	51190	chr17:63923807:-	ONLY_REF_SPLICE	YES	5	1	0.95	0.99	0.5425	0.113	SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	HCC1806_BREAST	0.95	0.99	0.6555	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	PRRT3-AS1--ARPC4-TTLL3	55	25	PRRT3-AS1	2066	chr3:9990153:+	ARPC4-TTLL3	12882	chr3:9854627:+	ONLY_REF_SPLICE	YES	4	17	0.95	0.82	0.4144	0.1884	PRRT3-AS1->PRRT3_antisense_RNA_1,chr3:9989088-9996471:+,ARPC4-TTLL3->ARPC4-TTLL3_readthrough,chr3:9834766-9877085:+	HCC1806_BREAST	0.82	0.95	0.6028	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	PTPRJ--LPXN	47	0	PTPRJ	1448	chr11:48002560:+	LPXN	37103	chr11:58331674:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3541	0	{Klijn_CCL:Breast=1},PTPRJ->Oncogene{Bushman},chr11:48002113-48189670:+,protein_tyrosine_phosphatase,_receptor_type_J,LPXN->chr11:58294344-58345693:-,leupaxin	HCC1806_BREAST	1	1	0.3541	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CDCA5--AY269186.1	18	106	CDCA5	1801	chr11:64850836:-	AY269186.1	11558	chr3:65435:+	INCL_NON_REF_SPLICE	YES	33	0	0.79	1	0.1356	0.7987	CDCA5->cell_division_cycle_associated_5,chr11:64833772-64851636:-,AY269186.1->chr3:65431-66175:+	HCC1806_BREAST	0.79	1	0.9343	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	FAM222B--SEZ6	31	26	FAM222B	4726	chr17:27139227:-	SEZ6	21946	chr17:27296970:-	ONLY_REF_SPLICE	YES	10	0	0.85	1	0.2336	0.1959	LOCAL_REARRANGEMENT:-:[99669],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC1806_BREAST	0.85	1	0.4295	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CCDC57--CSNK1D	33	6	CCDC57	12407	chr17:80136903:-	CSNK1D	58830	chr17:80201588:-	INCL_NON_REF_SPLICE	YES	44	56	0.47	0.41	0.2486	0.0452	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[26193],CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	HCC1806_BREAST	0.41	0.47	0.2938	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	BRE--DPYSL5	31	9	BRE	10577	chr2:28352247:+	DPYSL5	24650	chr2:27121364:+	ONLY_REF_SPLICE	YES	44	0	0.48	1	0.2336	0.0678	BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,DPYSL5->chr2:27070615-27173219:+,dihydropyrimidinase_like_5	HCC1806_BREAST	0.48	1	0.3014	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	PPP1R13L--PVR	28	15	PPP1R13L	10242	chr19:45895138:-	PVR	20383	chr19:45153081:+	ONLY_REF_SPLICE	YES	100	20	0.3	0.68	0.211	0.113	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,PVR->chr19:45147098-45166850:+,poliovirus_receptor	HCC1806_BREAST	0.3	0.68	0.324	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	SMURF2--CEP112	30	4	SMURF2	1240	chr17:62657947:-	CEP112	51190	chr17:63923807:-	ONLY_REF_SPLICE	YES	1	1	0.97	0.97	0.226	0.0301	SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	HCC1806_BREAST	0.97	0.97	0.2561	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	C22orf39--ARVCF	28	6	C22orf39	24609	chr22:19346859:-	ARVCF	33494	chr22:19998031:-	ONLY_REF_SPLICE	YES	27	0	0.56	1	0.211	0.0452	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,ARVCF->armadillo_repeat_gene_deleted_in_velocardiofacial_syndrome,chr22:19957419-20004331:-	HCC1806_BREAST	0.56	1	0.2562	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	GALNT18--SBF2	26	6	GALNT18	6283	chr11:11454168:-	SBF2	35186	chr11:9990092:-	ONLY_REF_SPLICE	YES	4	5	0.89	0.86	0.1959	0.0452	GALNT18->chr11:11292423-11643552:-,polypeptide_N-acetylgalactosaminyltransferase_18,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	HCC1806_BREAST	0.86	0.89	0.2411	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CD151--DRD4	19	20	CD151	5001	chr11:836843:+	DRD4	13631	chr11:640401:+	ONLY_REF_SPLICE	YES	536	6	0.07	0.87	0.1432	0.1507	CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+,DRD4->chr11:637293-640706:+,dopamine_receptor_D4	HCC1806_BREAST	0.07	0.87	0.2939	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	FAM222B--SEZ6	17	26	FAM222B	5825	chr17:27117396:-	SEZ6	21946	chr17:27296970:-	ONLY_REF_SPLICE	YES	11	0	0.8	1	0.1281	0.1959	LOCAL_REARRANGEMENT:-:[99669],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC1806_BREAST	0.8	1	0.324	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	GPR39--NCKAP5	20	6	GPR39	2325	chr2:133175471:+	NCKAP5	39094	chr2:133430878:-	ONLY_REF_SPLICE	YES	21	0	0.55	1	0.1507	0.0452	LOCAL_INVERSION:+:-:[25242],GPR39->G_protein-coupled_receptor_39,chr2:133174147-133404132:+,NCKAP5->NCK_associated_protein_5,chr2:133429374-134326034:-	HCC1806_BREAST	0.55	1	0.1959	TRUE	0	0	0	2	0	TRUE	ACH-000624
HCC1806_BREAST	CDCA5--AY269186.1	2	75	CDCA5	1680	chr11:64850957:-	AY269186.1	11765	chr3:65642:+	ONLY_REF_SPLICE	YES	46	0	0.63	1	0.0151	0.5651	CDCA5->cell_division_cycle_associated_5,chr11:64833772-64851636:-,AY269186.1->chr3:65431-66175:+	HCC1806_BREAST	0.63	1	0.5802	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CD151--DRD4	12	30	CD151	5001	chr11:836843:+	DRD4	12663	chr11:639433:+	ONLY_REF_SPLICE	YES	536	2	0.07	0.95	0.0904	0.226	CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+,DRD4->chr11:637293-640706:+,dopamine_receptor_D4	HCC1806_BREAST	0.07	0.95	0.3164	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	HBEGF--CTC-329D1.3	17	7	HBEGF	3149	chr5:139722220:-	CTC-329D1.3	11848	chr5:139728125:-	ONLY_REF_SPLICE	YES	33	0	0.42	1	0.1281	0.0527	LOCAL_REARRANGEMENT:-:[1853],HBEGF->chr5:139712428-139726216:-,heparin_binding_EGF_like_growth_factor,CTC-329D1.3->chr5:139728069-139737379:-	HCC1806_BREAST	0.42	1	0.1808	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	FAM222B--SEZ6	16	9	FAM222B	3499	chr17:27161311:-	SEZ6	21946	chr17:27296970:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1206	0.0678	LOCAL_REARRANGEMENT:-:[99669],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC1806_BREAST	0.96	1	0.1884	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	FAM222B--SEZ6	17	4	FAM222B	2441	chr17:27169700:-	SEZ6	21946	chr17:27296970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1281	0.0301	LOCAL_REARRANGEMENT:-:[99669],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC1806_BREAST	1	1	0.1582	TRUE	0	1	0	1	1	TRUE	ACH-000624
HCC1806_BREAST	CD151--DRD4	15	11	CD151	4600	chr11:836442:+	DRD4	13631	chr11:640401:+	ONLY_REF_SPLICE	YES	571	6	0.04	0.81	0.113	0.0829	CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+,DRD4->chr11:637293-640706:+,dopamine_receptor_D4	HCC1806_BREAST	0.04	0.81	0.1959	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	RIF1--PKD1L1	17	1	RIF1	20869	chr2:152308219:+	PKD1L1	87188	chr7:47898483:-	ONLY_REF_SPLICE	YES	11	0	0.62	1	0.1281	0.0075	RIF1->chr2:152266397-152364527:+,replication_timing_regulatory_factor_1,PKD1L1->chr7:47814250-47988088:-,polycystin_1_like_1,_transient_receptor_potential_channel_interacting	HCC1806_BREAST	0.62	1	0.1356	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	ARHGEF10L--PADI6	14	9	ARHGEF10L	30160	chr1:17983203:+	PADI6	42857	chr1:17701922:+	ONLY_REF_SPLICE	YES	29	0	0.44	1	0.1055	0.0678	ARHGEF10L->Rho_guanine_nucleotide_exchange_factor_10_like,chr1:17866330-18024369:+,PADI6->chr1:17698691-17728195:+,peptidyl_arginine_deiminase_6	HCC1806_BREAST	0.44	1	0.1733	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	HS6ST2--GPC3	12	4	HS6ST2	4211	chrX:132090836:-	GPC3	21478	chrX:132834056:-	ONLY_REF_SPLICE	YES	18	0	0.47	1	0.0904	0.0301	{Klijn_CCL:Lung=1},HS6ST2->chrX:131760044-132095423:-,heparan_sulfate_6-O-sulfotransferase_2,GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3	HCC1806_BREAST	0.47	1	0.1205	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CD151--DRD4	8	18	CD151	4600	chr11:836442:+	DRD4	12663	chr11:639433:+	ONLY_REF_SPLICE	YES	571	2	0.04	0.93	0.0603	0.1356	CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+,DRD4->chr11:637293-640706:+,dopamine_receptor_D4	HCC1806_BREAST	0.04	0.93	0.1959	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	REEP5--MCC	11	4	REEP5	6053	chr5:112222712:-	MCC	42694	chr5:112379327:-	ONLY_REF_SPLICE	YES	181	42	0.08	0.26	0.0829	0.0301	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:-:[99560],REEP5->chr5:112212084-112258236:-,receptor_accessory_protein_5,MCC->Oncogene{Bushman},chr5:112357796-112824527:-,mutated_in_colorectal_cancers	HCC1806_BREAST	0.08	0.26	0.113	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	ASAP2--RP11-734K21.2	11	3	ASAP2	1466	chr2:9347359:+	RP11-734K21.2	35785	chr2:9244536:+	INCL_NON_REF_SPLICE	YES	3	0	0.82	1	0.0829	0.0226	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-734K21.2->chr2:9243569-9245243:+	HCC1806_BREAST	0.82	1	0.1055	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	LPP--RTP1	10	6	LPP	31337	chr3:188478070:+	RTP1	54064	chr3:186915378:+	INCL_NON_REF_SPLICE	YES	17	0	0.48	1	0.0753	0.0452	LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,RTP1->chr3:186915274-186919253:+,receptor_(chemosensory)_transporter_protein_1	HCC1806_BREAST	0.48	1	0.1205	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	SIRT3--AC016629.3	11	2	SIRT3	10641	chr11:218832:-	AC016629.3	17213	chr19:59109183:-	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0829	0.0151	SIRT3->chr11:215458-236931:-,sirtuin_3,AC016629.3->chr19:59105263-59110722:-	HCC1806_BREAST	0.81	1	0.098	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	PRRT3-AS1--ARPC4-TTLL3	6	18	PRRT3-AS1	2066	chr3:9990153:+	ARPC4-TTLL3	12885	chr3:9854630:+	INCL_NON_REF_SPLICE	YES	4	17	0.86	0.59	0.0452	0.1356	PRRT3-AS1->PRRT3_antisense_RNA_1,chr3:9989088-9996471:+,ARPC4-TTLL3->ARPC4-TTLL3_readthrough,chr3:9834766-9877085:+	HCC1806_BREAST	0.59	0.86	0.1808	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CD22--HPN	10	1	CD22	1172	chr19:35810335:+	HPN	23670	chr19:35550577:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0753	0.0075	CD22->CD22_molecule,chr19:35810164-35838258:+,HPN->chr19:35531410-35557475:+,hepsin	HCC1806_BREAST	1	1	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	ZNF224--SIGLEC16	10	1	ZNF224	5698	chr19:44605378:+	SIGLEC16	12905	chr19:50473069:+	ONLY_REF_SPLICE	YES	15	0	0.42	1	0.0753	0.0075	ZNF224->chr19:44598492-44612479:+,zinc_finger_protein_224,SIGLEC16->chr19:50472857-50479071:+,sialic_acid_binding_Ig_like_lectin_16_(gene/pseudogene)	HCC1806_BREAST	0.42	1	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	ZC3H7B--ERBB3	8	7	ZC3H7B	1251	chr22:41697776:+	ERBB3	32631	chr12:56477535:+	ONLY_REF_SPLICE	YES	43	44	0.26	0.25	0.0603	0.0527	ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,ERBB3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:56473641-56497289:+,erb-b2_receptor_tyrosine_kinase_3	HCC1806_BREAST	0.25	0.26	0.113	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MIR205HG--DNAJC27-AS1	9	0	MIR205HG	1351	chr1:209602515:+	DNAJC27-AS1	13914	chr2:25251407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0678	0	HGNC_GENEFAM,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,DNAJC27-AS1->DNAJC27_antisense_RNA_1,chr2:25194259-25262563:+	HCC1806_BREAST	1	1	0.0678	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	WNK1--USP31	9	0	WNK1	12527	chr12:971436:+	USP31	49960	chr16:23102125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0678	0	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,USP31->chr16:23072727-23160591:-,ubiquitin_specific_peptidase_31	HCC1806_BREAST	1	1	0.0678	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	FAM222B--SEZ6	2	27	FAM222B	6927	chr17:27104066:-	SEZ6	21946	chr17:27296970:-	ONLY_REF_SPLICE	YES	11	0	0.72	1	0.0151	0.2034	LOCAL_REARRANGEMENT:-:[99669],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC1806_BREAST	0.72	1	0.2185	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	SMURF2--CEP112	8	2	SMURF2	1240	chr17:62657947:-	CEP112	68147	chr17:63637183:-	ONLY_REF_SPLICE	YES	1	49	0.91	0.17	0.0603	0.0151	SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	HCC1806_BREAST	0.17	0.91	0.0754	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	ZNF649--SIPA1L3	8	2	ZNF649	5153	chr19:52399725:-	SIPA1L3	30445	chr19:38631824:+	ONLY_REF_SPLICE	YES	7	13	0.59	0.43	0.0603	0.0151	GTEx&tcga_normals:1/3694=0.03%,ZNF649->chr19:52392477-52408293:-,zinc_finger_protein_649,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	HCC1806_BREAST	0.43	0.59	0.0754	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	ASAP2--RP11-734K21.2	7	3	ASAP2	1466	chr2:9347359:+	RP11-734K21.2	35814	chr2:9244565:+	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0527	0.0226	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-734K21.2->chr2:9243569-9245243:+	HCC1806_BREAST	0.77	1	0.0753	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CCDC57--CSNK1D	7	3	CCDC57	12407	chr17:80136903:-	CSNK1D	59295	chr17:80201123:-	INCL_NON_REF_SPLICE	YES	44	94	0.19	0.1	0.0527	0.0226	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[26193],CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	HCC1806_BREAST	0.1	0.19	0.0753	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CTD-3116E22.6--ZNF274	7	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	HCC1806_BREAST	1	1	0.0527	TRUE	0	0	0	13	0	TRUE	ACH-000624
HCC1806_BREAST	GALNT18--SBF2	7	0	GALNT18	6283	chr11:11454168:-	SBF2	36391	chr11:9985429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	GALNT18->chr11:11292423-11643552:-,polypeptide_N-acetylgalactosaminyltransferase_18,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	HCC1806_BREAST	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CD151--DRD4	1	21	CD151	5001	chr11:836843:+	DRD4	12878	chr11:639648:+	ONLY_REF_SPLICE	NO	536	3	0.04	0.88	0.0075	0.1582	CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+,DRD4->chr11:637293-640706:+,dopamine_receptor_D4	HCC1806_BREAST	0.04	0.88	0.1657	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CDC42BPB--LINC00605	6	1	CDC42BPB	26920	chr14:103416102:-	LINC00605	41544	chr14:103654607:-	ONLY_REF_SPLICE	YES	55	1	0.11	0.88	0.0452	0.0075	CDC42BPB->CDC42_binding_protein_kinase_beta,chr14:103398716-103523799:-,LINC00605->chr14:103653558-103655365:-,long_intergenic_non-protein_coding_RNA_605	HCC1806_BREAST	0.11	0.88	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	C11orf49--CKAP5	6	0	C11orf49	1163	chr11:46958402:+	CKAP5	31718	chr11:46832728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_INVERSION:+:-:[90393],C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49,CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5	HCC1806_BREAST	1	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	SIRT3--AC016629.3	5	2	SIRT3	11744	chr11:216670:-	AC016629.3	17213	chr19:59109183:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.0151	SIRT3->chr11:215458-236931:-,sirtuin_3,AC016629.3->chr19:59105263-59110722:-	HCC1806_BREAST	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	LDLRAD3--TCP11L1	5	1	LDLRAD3	1164	chr11:35965694:+	TCP11L1	23499	chr11:33078661:+	ONLY_REF_SPLICE	YES	1	6	0.86	0.5	0.0377	0.0075	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,TCP11L1->chr11:33060963-33127489:+,t-complex_11_like_1	HCC1806_BREAST	0.5	0.86	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MAG--HPN	5	1	MAG	11194	chr19:35804332:+	HPN	20192	chr19:35550577:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.0075	MAG->chr19:35783028-35804707:+,myelin_associated_glycoprotein,HPN->chr19:35531410-35557475:+,hepsin	HCC1806_BREAST	1	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	ZNF606--DENND5A	4	4	ZNF606	11070	chr19:58490022:-	DENND5A	22036	chr11:9202631:-	INCL_NON_REF_SPLICE	YES	7	26	0.53	0.24	0.0301	0.0301	ZNF606->chr19:58488421-58514717:-,zinc_finger_protein_606,DENND5A->DENN_domain_containing_5A,chr11:9160372-9286937:-	HCC1806_BREAST	0.24	0.53	0.0602	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	VAMP8--DNAH6	4	0	VAMP8	1083	chr2:85788767:+	DNAH6	28938	chr2:84831463:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	VAMP8->Oncogene{Bushman},chr2:85788685-85809154:+,vesicle_associated_membrane_protein_8,DNAH6->chr2:84743579-85046713:+,dynein_axonemal_heavy_chain_6	HCC1806_BREAST	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	RIF1--PKD1L1	3	1	RIF1	19769	chr2:152303089:+	PKD1L1	87188	chr7:47898483:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0226	0.0075	RIF1->chr2:152266397-152364527:+,replication_timing_regulatory_factor_1,PKD1L1->chr7:47814250-47988088:-,polycystin_1_like_1,_transient_receptor_potential_channel_interacting	HCC1806_BREAST	0.44	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MAG--HPN	3	0	MAG	9782	chr19:35802920:+	HPN	20192	chr19:35550577:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MAG->chr19:35783028-35804707:+,myelin_associated_glycoprotein,HPN->chr19:35531410-35557475:+,hepsin	HCC1806_BREAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MTDH--KB-1043D8.6	3	0	MTDH	2811	chr8:98673401:+	KB-1043D8.6	22653	chr8:97250135:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MTDH->chr8:98656407-98740998:+,metadherin,KB-1043D8.6->chr8:97247655-97250262:+	HCC1806_BREAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	C22orf39--ARVCF	2	2	C22orf39	23460	chr22:19348760:-	ARVCF	33494	chr22:19998031:-	ONLY_REF_SPLICE	YES	32	0	0.11	1	0.0151	0.0151	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,ARVCF->armadillo_repeat_gene_deleted_in_velocardiofacial_syndrome,chr22:19957419-20004331:-	HCC1806_BREAST	0.11	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	LDLRAD3--TCP11L1	2	2	LDLRAD3	3412	chr11:36057799:+	TCP11L1	24303	chr11:33079465:+	ONLY_REF_SPLICE	YES	21	5	0.16	0.44	0.0151	0.0151	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,TCP11L1->chr11:33060963-33127489:+,t-complex_11_like_1	HCC1806_BREAST	0.16	0.44	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	HS6ST2--GPC3	2	1	HS6ST2	4211	chrX:132090836:-	GPC3	24859	chrX:132730627:-	ONLY_REF_SPLICE	YES	18	5	0.14	0.38	0.0151	0.0075	{Klijn_CCL:Lung=1},HS6ST2->chrX:131760044-132095423:-,heparan_sulfate_6-O-sulfotransferase_2,GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3	HCC1806_BREAST	0.14	0.38	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	HS6ST2--GPC3	2	1	HS6ST2	4211	chrX:132090836:-	GPC3	23738	chrX:132795878:-	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0151	0.0075	{Klijn_CCL:Lung=1},HS6ST2->chrX:131760044-132095423:-,heparan_sulfate_6-O-sulfotransferase_2,GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3	HCC1806_BREAST	0.14	1	0.0226	TRUE	0	1	0	2	0	TRUE	ACH-000624
HCC1806_BREAST	FRMD6--HNRNPC	2	0	FRMD6	11179	chr14:52118714:+	HNRNPC	47511	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	HCC1806_BREAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	ARHGEF10L--PADI6	1	1	ARHGEF10L	30160	chr1:17983203:+	PADI6	43930	chr1:17706415:+	ONLY_REF_SPLICE	YES	29	0	0.06	1	0.0075	0.0075	ARHGEF10L->Rho_guanine_nucleotide_exchange_factor_10_like,chr1:17866330-18024369:+,PADI6->chr1:17698691-17728195:+,peptidyl_arginine_deiminase_6	HCC1806_BREAST	0.06	1	0.015	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	SRD5A1--PER3	1	1	SRD5A1	1527	chr5:6633982:+	PER3	13226	chr1:7844714:+	ONLY_REF_SPLICE	YES	42	0	0.05	1	0.0075	0.0075	SRD5A1->chr5:6633456-6669675:+,steroid_5_alpha-reductase_1,PER3->chr1:7844380-7905237:+,period_circadian_clock_3	HCC1806_BREAST	0.05	1	0.015	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	UST--SASH1	1	1	UST	1350	chr6:149068813:+	SASH1	20269	chr6:148711270:+	ONLY_REF_SPLICE	YES	6	3	0.25	0.4	0.0075	0.0075	UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HCC1806_BREAST	0.25	0.4	0.015	TRUE	0	0	0	1	0	TRUE	ACH-000624
HS821T_FIBROBLAST	SMYD2--KCNH1	3	3	SMYD2	1326	chr1:214454770:+	KCNH1	18524	chr1:211280719:-	ONLY_REF_SPLICE	YES	57	12	0.1	0.33	0.0301	0.0301	SMYD2->SET_and_MYND_domain_containing_2,chr1:214454445-214510474:+,KCNH1->Oncogene{Bushman},chr1:210856555-211307457:-,potassium_voltage-gated_channel_subfamily_H_member_1	HS821T_FIBROBLAST	0.1	0.33	0.0602	TRUE	0	0	0	1	0	TRUE	ACH-000526
HS821T_FIBROBLAST	HNRNPR--TCEA3	3	0	HNRNPR	4150	chr1:23664247:-	TCEA3	32940	chr1:23710910:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	LOCAL_REARRANGEMENT:-:[36725],HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TCEA3->chr1:23707554-23751233:-,transcription_elongation_factor_A3	HS821T_FIBROBLAST	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000526
HS821T_FIBROBLAST	CCBE1--CPLX4	2	0	CCBE1	2839	chr18:57333308:-	CPLX4	21532	chr18:56980004:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CCBE1->chr18:57098172-57364612:-,collagen_and_calcium_binding_EGF_domains_1,CPLX4->chr18:56942388-56985881:-,complexin_4	HS821T_FIBROBLAST	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000526
HS821T_FIBROBLAST	ZZZ3--AK5	2	0	ZZZ3	1158	chr1:78148947:-	AK5	43939	chr1:78001532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:-:+:[2450],ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3,AK5->adenylate_kinase_5,chr1:77747736-78025651:+	HS821T_FIBROBLAST	1	1	0.0201	TRUE	0	1	0	1	0	TRUE	ACH-000526
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	370	125	IGH@	94754	chr14:106330024:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	2	86	1	0.85	4.6898	1.5844	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	6.2742	TRUE	0	0	0	3	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	219	125	IGH@	94353	chr14:106330425:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	5	86	0.99	0.8	2.7758	1.5844	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.99	4.3602	TRUE	0	0	0	3	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF268--RNF6	145	58	ZNF268	10743	chr12:133768589:+	RNF6	29208	chr13:26706589:-	ONLY_REF_SPLICE	YES	1	0	1	1	1.8379	0.7352	ZNF268->chr12:133707570-133783698:+,zinc_finger_protein_268,RNF6->chr13:26706253-26796791:-,ring_finger_protein_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.5731	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	99	134	IGH@	95370	chr14:106329408:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	2	86	0.99	0.73	1.2548	1.6985	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.99	2.9533	TRUE	0	0	0	3	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	58	125	IGH@	93161	chr14:106331617:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	5	86	0.97	0.68	0.7352	1.5844	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.97	2.3196	TRUE	0	0	0	2	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NBPF3--PRDX6	68	28	NBPF3	4182	chr1:21771712:+	PRDX6	33527	chr1:173454500:+	ONLY_REF_SPLICE	YES	2	300	0.98	0.24	0.8619	0.3549	NBPF3->chr1:21766621-21811498:+,neuroblastoma_breakpoint_family_member_3,PRDX6->chr1:173446405-173457946:+,peroxiredoxin_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.98	1.2168	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-114G22.1--ACBD6	39	25	RP11-114G22.1	13550	chr12:23125402:+	ACBD6	33088	chr1:180283857:-	ONLY_REF_SPLICE	YES	6	132	0.91	0.33	0.4943	0.3169	RP11-114G22.1->chr12:22852793-23327057:+,ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.91	0.8112	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAT1--RHBDD1	37	16	STAT1	2994	chr2:191878744:-	RHBDD1	39755	chr2:227771509:+	ONLY_REF_SPLICE	YES	23	32	0.7	0.62	0.469	0.2028	STAT1->chr2:191829084-191885686:-,signal_transducer_and_activator_of_transcription_1,RHBDD1->chr2:227700297-227863931:+,rhomboid_domain_containing_1	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.7	0.6718	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	125	IGH@	94754	chr14:106330024:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	2	74	0.98	0.63	0.0127	1.5844	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.98	1.5971	TRUE	0	0	0	6	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	125	IGH@	93161	chr14:106331617:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	5	74	0.96	0.63	0.0127	1.5844	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.96	1.5971	TRUE	0	0	0	5	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	125	IGH@	94353	chr14:106330425:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	5	74	0.96	0.63	0.0127	1.5844	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.96	1.5971	TRUE	0	0	0	5	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF268--RNF6	10	60	ZNF268	11849	chr12:133770119:+	RNF6	29208	chr13:26706589:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1268	0.7605	ZNF268->chr12:133707570-133783698:+,zinc_finger_protein_268,RNF6->chr13:26706253-26796791:-,ring_finger_protein_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8873	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ1A--RP11-1103G16.1	16	1	BAZ1A	24866	chr14:35240717:-	RP11-1103G16.1	48556	chr14:30907377:-	ONLY_REF_SPLICE	YES	53	0	0.24	1	0.2028	0.0127	BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,RP11-1103G16.1->chr14:30907198-31042835:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.2155	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf131--NBPF10	11	2	C1orf131	8422	chr1:231361110:-	NBPF10	13734	chr1:145290482:+	INCL_NON_REF_SPLICE	YES	25	0	0.34	1	0.1394	0.0254	C1orf131->chr1:231359509-231376933:-,chromosome_1_open_reading_frame_131,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	1	0.1648	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGEF12--HDAC9	7	7	ARHGEF12	11858	chr11:120295124:+	HDAC9	67650	chr7:18535885:+	ONLY_REF_SPLICE	YES	48	49	0.23	0.22	0.0887	0.0887	{Klijn_CCL:Lymphoid=1},ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+,HDAC9->chr7:18126572-19042039:+,histone_deacetylase_9	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.23	0.1774	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAT1--RHBDD1	4	18	STAT1	3487	chr2:191878251:-	RHBDD1	39755	chr2:227771509:+	ONLY_REF_SPLICE	YES	16	32	0.58	0.41	0.0507	0.2282	STAT1->chr2:191829084-191885686:-,signal_transducer_and_activator_of_transcription_1,RHBDD1->chr2:227700297-227863931:+,rhomboid_domain_containing_1	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.58	0.2789	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF268--RNF6	6	10	ZNF268	9113	chr12:133764658:+	RNF6	29208	chr13:26706589:-	ONLY_REF_SPLICE	YES	54	0	0.23	1	0.0761	0.1268	ZNF268->chr12:133707570-133783698:+,zinc_finger_protein_268,RNF6->chr13:26706253-26796791:-,ring_finger_protein_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.2029	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASAL2--RP11-375H19.2	7	3	RASAL2	1966	chr1:178063829:+	RP11-375H19.2	38908	chr1:166051842:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0887	0.038	RASAL2->Oncogene{Bushman},RAS_protein_activator_like_2,chr1:178062864-178448644:+,RP11-375H19.2->chr1:166050420-166056720:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1267	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LRRFIP1--DOCK10	6	1	LRRFIP1	36838	chr2:238683105:+	DOCK10	99840	chr2:225630554:-	ONLY_REF_SPLICE	YES	9	6	0.44	0.54	0.0761	0.0127	LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,DOCK10->chr2:225629807-225907162:-,dedicator_of_cytokinesis_10	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.54	0.0888	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUCO--RP11-323I1.1	6	0	SUCO	2149	chr1:172502637:+	RP11-323I1.1	31233	chr1:213904760:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0761	0	SUCO->SUN_domain_containing_ossification_factor,chr1:172501489-172580971:+,RP11-323I1.1->chr1:213904759-213967930:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0761	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSH1--LINC00441	4	0	SSH1	13914	chr12:109198832:-	LINC00441	30945	chr13:48876628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0507	0	SSH1->chr12:109176466-109251366:-,slingshot_protein_phosphatase_1,LINC00441->chr13:48870649-48877797:-,long_intergenic_non-protein_coding_RNA_441	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DARS2--RP11-280O1.2	3	2	DARS2	17557	chr1:173823043:+	RP11-280O1.2	26327	chr1:165543325:-	ONLY_REF_SPLICE	YES	87	0	0.05	1	0.038	0.0254	DARS2->aspartyl-tRNA_synthetase_2,_mitochondrial,chr1:173793641-173827684:+,RP11-280O1.2->chr1:165446078-165551392:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM173B--CTNND2	3	0	FAM173B	6252	chr5:10235323:-	CTNND2	37457	chr5:10992789:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.038	0	FAM173B->chr5:10226442-10250009:-,family_with_sequence_similarity_173_member_B,CTNND2->Oncogene{Bushman},catenin_delta_2,chr5:10971952-11904155:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DARS2--RP11-280O1.2	2	2	DARS2	17557	chr1:173823043:+	RP11-280O1.2	35518	chr1:165470864:-	ONLY_REF_SPLICE	YES	87	1	0.04	0.8	0.0254	0.0254	DARS2->aspartyl-tRNA_synthetase_2,_mitochondrial,chr1:173793641-173827684:+,RP11-280O1.2->chr1:165446078-165551392:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.8	0.0508	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf131--NBPF10	2	1	C1orf131	8315	chr1:231361217:-	NBPF10	15329	chr1:145293371:+	ONLY_REF_SPLICE	YES	25	8	0.11	0.27	0.0254	0.0127	C1orf131->chr1:231359509-231376933:-,chromosome_1_open_reading_frame_131,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.27	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAT1--RHBDD1	1	5	STAT1	2994	chr2:191878744:-	RHBDD1	42642	chr2:227778924:+	ONLY_REF_SPLICE	YES	23	28	0.21	0.18	0.0127	0.0634	STAT1->chr2:191829084-191885686:-,signal_transducer_and_activator_of_transcription_1,RHBDD1->chr2:227700297-227863931:+,rhomboid_domain_containing_1	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.21	0.0761	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF3C3--EXOSC1	2	0	GTF3C3	16901	chr2:197638393:-	EXOSC1	32319	chr10:99198460:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTF3C3->chr2:197627756-197664449:-,general_transcription_factor_IIIC_subunit_3,EXOSC1->chr10:99195899-99205774:-,exosome_component_1	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDIA6--TXNDC5	2	0	PDIA6	10335	chr2:10942625:-	TXNDC5	35187	chr6:7884721:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	HGNC_GENEFAM,PROTCLUST,PDIA6->chr2:10923517-10978103:-,protein_disulfide_isomerase_family_A_member_6,TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R37--B2M	2	0	PPP1R37	3132	chr19:45596785:+	B2M	20982	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	PPP1R37->chr19:45594654-45651335:+,protein_phosphatase_1_regulatory_subunit_37,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A44--BIRC2	2	0	SLC25A44	1159	chr1:156164038:+	BIRC2	19000	chr11:102233627:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM18--CTDP1	2	0	TMEM18	1151	chr2:677289:-	CTDP1	28532	chr18:77496355:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	TMEM18->chr2:667335-677439:-,transmembrane_protein_18,CTDP1->CTD_phosphatase_subunit_1,chr18:77439801-77514510:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF268--RNF6	1	4	ZNF268	6809	chr12:133758616:+	RNF6	29208	chr13:26706589:-	ONLY_REF_SPLICE	NO	81	0	0.06	1	0.0127	0.0507	ZNF268->chr12:133707570-133783698:+,zinc_finger_protein_268,RNF6->chr13:26706253-26796791:-,ring_finger_protein_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ1A--RP11-1103G16.1	1	1	BAZ1A	24866	chr14:35240717:-	RP11-1103G16.1	47223	chr14:30919898:-	ONLY_REF_SPLICE	YES	53	0	0.04	1	0.0127	0.0127	BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,RP11-1103G16.1->chr14:30907198-31042835:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELAVL4--FAF1	1	1	ELAVL4	9432	chr1:50642864:+	FAF1	25366	chr1:51267349:-	ONLY_REF_SPLICE	YES	0	20	1	0.09	0.0127	0.0127	{Klijn_CCL:Lymphoid=1},ELAVL4->ELAV_like_neuron-specific_RNA_binding_protein_4,chr1:50513686-50669458:+,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF292--GJB7	54	29	ZNF292	13472	chr6:87953329:+	GJB7	33309	chr6:87994657:-	ONLY_REF_SPLICE	YES	20	0	0.81	1	0.5477	0.2941	LOCAL_INVERSION:+:-:[18782],ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,GJB7->chr6:87992696-88038996:-,gap_junction_protein_beta_7	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.8418	TRUE	0	0	0	1	0	TRUE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTYMK--ATG4B	2	0	DTYMK	1338	chr2:242626069:-	ATG4B	21075	chr2:242606060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[1885],DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase,ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	5	0	TRUE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--IVNS1ABP	2	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	1	4	0	16	0	TRUE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCLS1--USP10	2	0	HCLS1	1108	chr3:121379667:-	USP10	34403	chr16:84801799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1,USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF292--GJB7	1	3	ZNF292	8965	chr6:87928449:+	GJB7	33309	chr6:87994657:-	ONLY_REF_SPLICE	YES	58	0	0.06	1	0.0101	0.0304	LOCAL_INVERSION:+:-:[18782],ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,GJB7->chr6:87992696-88038996:-,gap_junction_protein_beta_7	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	D2HGDH--ATG4B	1	1	D2HGDH	13178	chr2:242695429:+	ATG4B	20447	chr2:242590425:+	ONLY_REF_SPLICE	YES	39	2	0.05	0.5	0.0101	0.0101	LOCAL_REARRANGEMENT:+:[60722],D2HGDH->D-2-hydroxyglutarate_dehydrogenase,chr2:242673994-242708231:+,ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.5	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000707
SNU1079_BILIARY_TRACT	UVRAG--RP11-693N9.2	76	26	UVRAG	1358	chr11:75526569:+	RP11-693N9.2	37693	chr11:104776284:-	ONLY_REF_SPLICE	YES	19	19	0.84	0.84	0.7276	0.2489	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,RP11-693N9.2->chr11:104772276-104789800:-	SNU1079_BILIARY_TRACT	0.84	0.84	0.9765	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	ITPK1--MIPOL1	74	24	ITPK1	8860	chr14:93460225:-	MIPOL1	57691	chr14:38016110:+	ONLY_REF_SPLICE	YES	113	13	0.46	0.88	0.7084	0.2298	ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	SNU1079_BILIARY_TRACT	0.46	0.88	0.9382	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	GTF2A1--SERPINA12	58	25	GTF2A1	2991	chr14:81682757:-	SERPINA12	21440	chr14:94982491:-	ONLY_REF_SPLICE	YES	22	0	0.79	1	0.5553	0.2393	GTF2A1->Oncogene{Bushman},chr14:81641796-81687721:-,general_transcription_factor_IIA_subunit_1,SERPINA12->chr14:94953611-94984181:-,serpin_family_A_member_12	SNU1079_BILIARY_TRACT	0.79	1	0.7946	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	UVRAG--RP11-693N9.2	37	45	UVRAG	1358	chr11:75526569:+	RP11-693N9.2	34242	chr11:104779735:-	ONLY_REF_SPLICE	YES	19	2	0.81	0.98	0.3542	0.4308	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,RP11-693N9.2->chr11:104772276-104789800:-	SNU1079_BILIARY_TRACT	0.81	0.98	0.785	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	PCNX--SOS2	34	25	PCNX	34724	chr14:71524441:+	SOS2	80866	chr14:50600957:-	ONLY_REF_SPLICE	YES	15	10	0.8	0.86	0.3255	0.2393	PCNX->chr14:71374122-71582099:+,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	SNU1079_BILIARY_TRACT	0.8	0.86	0.5648	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-950C14.7--CTD-2184C24.2	33	23	RP11-950C14.7	1208	chr14:75594063:+	CTD-2184C24.2	7980	chr14:60709588:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3159	0.2202	RP11-950C14.7->chr14:75593856-75603633:+,CTD-2184C24.2->chr14:60706839-60715483:-	SNU1079_BILIARY_TRACT	1	1	0.5361	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-950C14.7--CTD-2184C24.2	23	15	RP11-950C14.7	1208	chr14:75594063:+	CTD-2184C24.2	10396	chr14:60707172:-	ONLY_REF_SPLICE	YES	0	11	1	0.78	0.2202	0.1436	RP11-950C14.7->chr14:75593856-75603633:+,CTD-2184C24.2->chr14:60706839-60715483:-	SNU1079_BILIARY_TRACT	0.78	1	0.3638	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	ITPK1--MIPOL1	16	31	ITPK1	8860	chr14:93460225:-	MIPOL1	46849	chr14:37969113:+	ONLY_REF_SPLICE	YES	113	16	0.29	0.75	0.1532	0.2968	ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	SNU1079_BILIARY_TRACT	0.29	0.75	0.45	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	AEBP2--SOX5	18	0	AEBP2	5542	chr12:19626289:+	SOX5	27367	chr12:23908658:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1723	0	AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU1079_BILIARY_TRACT	1	1	0.1723	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	ITPR2--RP11-788M5.3	17	4	ITPR2	2580	chr12:26943090:-	RP11-788M5.3	69050	chr11:101029890:+	ONLY_REF_SPLICE	YES	7	0	0.75	1	0.1627	0.0383	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,RP11-788M5.3->chr11:101018881-101080322:+	SNU1079_BILIARY_TRACT	0.75	1	0.201	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	GTF2A1--SERPINA12	6	26	GTF2A1	4058	chr14:81676214:-	SERPINA12	21440	chr14:94982491:-	ONLY_REF_SPLICE	YES	25	0	0.56	1	0.0574	0.2489	GTF2A1->Oncogene{Bushman},chr14:81641796-81687721:-,general_transcription_factor_IIA_subunit_1,SERPINA12->chr14:94953611-94984181:-,serpin_family_A_member_12	SNU1079_BILIARY_TRACT	0.56	1	0.3063	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	HEATR5A--SLC35F4	11	5	HEATR5A	27652	chr14:31795369:-	SLC35F4	60865	chr14:58048151:-	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.1053	0.0479	HEATR5A->HEAT_repeat_containing_5A,chr14:31760994-31889788:-,SLC35F4->chr14:58030640-58448912:-,solute_carrier_family_35_member_F4	SNU1079_BILIARY_TRACT	0.94	0.94	0.1532	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-950C14.7--CTD-2184C24.2	7	14	RP11-950C14.7	1110	chr14:75593965:+	CTD-2184C24.2	7980	chr14:60709588:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.067	0.134	RP11-950C14.7->chr14:75593856-75603633:+,CTD-2184C24.2->chr14:60706839-60715483:-	SNU1079_BILIARY_TRACT	0.81	1	0.201	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	ITPR2--RP11-788M5.3	8	4	ITPR2	2580	chr12:26943090:-	RP11-788M5.3	67960	chr11:101018874:+	INCL_NON_REF_SPLICE	YES	7	0	0.63	1	0.0766	0.0383	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,RP11-788M5.3->chr11:101018881-101080322:+	SNU1079_BILIARY_TRACT	0.63	1	0.1149	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	RALGPS2--FAM20B	7	3	RALGPS2	8945	chr1:178802685:+	FAM20B	31065	chr1:179012850:+	ONLY_REF_SPLICE	YES	25	2	0.29	0.83	0.067	0.0287	RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+,FAM20B->chr1:178994939-179045697:+,family_with_sequence_similarity_20_member_B	SNU1079_BILIARY_TRACT	0.29	0.83	0.0957	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	PCNX--SOS2	3	11	PCNX	34724	chr14:71524441:+	SOS2	81983	chr14:50597480:-	ONLY_REF_SPLICE	YES	15	13	0.48	0.52	0.0287	0.1053	PCNX->chr14:71374122-71582099:+,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	SNU1079_BILIARY_TRACT	0.48	0.52	0.134	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	AC012506.3--AC016768.1	4	1	AC012506.3	2367	chr2:23580553:-	AC016768.1	6782	chr2:23313719:-	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0383	0.0096	AC012506.3->chr2:23580387-23583247:-,AC016768.1->chr2:23240997-23421927:-	SNU1079_BILIARY_TRACT	0.71	1	0.0479	TRUE	0	7	2	1	7	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	ITPK1--MIPOL1	2	9	ITPK1	6705	chr14:93483021:-	MIPOL1	57691	chr14:38016110:+	ONLY_REF_SPLICE	YES	134	13	0.08	0.46	0.0191	0.0862	ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	SNU1079_BILIARY_TRACT	0.08	0.46	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	SPCS2--FGF19	4	1	SPCS2	5521	chr11:74680744:+	FGF19	14079	chr11:69514344:-	ONLY_REF_SPLICE	YES	75	20	0.06	0.2	0.0383	0.0096	SPCS2->chr11:74660292-74690076:+,signal_peptidase_complex_subunit_2,FGF19->ArcherDX_panel,FoundationOne_panel,chr11:69513000-69519410:-,fibroblast_growth_factor_19	SNU1079_BILIARY_TRACT	0.06	0.2	0.0479	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	ITPR2--RP11-977P2.1	2	1	ITPR2	2580	chr12:26943090:-	RP11-977P2.1	69101	chr12:28975206:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0191	0.0096	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,RP11-977P2.1->chr12:28974908-28978764:-	SNU1079_BILIARY_TRACT	0.3	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	AK7--RP11-966I7.1	2	0	AK7	6869	chr14:96887269:+	RP11-966I7.1	31966	chr14:29198762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	AK7->adenylate_kinase_7,chr14:96858448-96955764:+,RP11-966I7.1->chr14:29198289-29234483:-	SNU1079_BILIARY_TRACT	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	FANCM--RAD51B	2	0	FANCM	24754	chr14:45658565:+	RAD51B	48925	chr14:68758601:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	FANCM->Fanconi_anemia_complementation_group_M,chr14:45605143-45670093:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	SNU1079_BILIARY_TRACT	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	RLF--PSMB2	2	0	RLF	1264	chr1:40627308:+	PSMB2	20944	chr1:36075009:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,PSMB2->chr1:36067185-36107445:-,proteasome_subunit_beta_2	SNU1079_BILIARY_TRACT	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	RPS3--UBB	2	0	RPS3	2292	chr11:75111821:+	UBB	14087	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UBB->chr17:16284112-16286059:+,ubiquitin_B	SNU1079_BILIARY_TRACT	1	1	0.0191	TRUE	0	0	0	6	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	PCNX--SOS2	1	1	PCNX	25922	chr14:71502874:+	SOS2	80866	chr14:50600957:-	ONLY_REF_SPLICE	YES	32	10	0.06	0.17	0.0096	0.0096	PCNX->chr14:71374122-71582099:+,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	SNU1079_BILIARY_TRACT	0.06	0.17	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	TTLL5--RP11-84C10.2	1	1	TTLL5	26208	chr14:76203950:+	RP11-84C10.2	56147	chr14:21387795:+	ONLY_REF_SPLICE	YES	7	3	0.22	0.4	0.0096	0.0096	TTLL5->chr14:76099968-76421421:+,tubulin_tyrosine_ligase_like_5,RP11-84C10.2->chr14:21387500-21388458:+	SNU1079_BILIARY_TRACT	0.22	0.4	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000209
SLR21_KIDNEY	HCG4P5--SPP1	35	58	HCG4P5	1476	chr6:29910369:-	SPP1	5041	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	17	0	0.85	1	0.3894	0.6453	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0.85	1	1.0347	TRUE	0	1	0	4	1	TRUE	ACH-000016
SLR21_KIDNEY	HCG4P5--SPP1	8	58	HCG4P5	1479	chr6:29910366:-	SPP1	5044	chr4:88896869:+	INCL_NON_REF_SPLICE	YES	12	0	0.85	1	0.089	0.6453	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0.85	1	0.7343	TRUE	0	1	0	4	1	TRUE	ACH-000016
SLR21_KIDNEY	HCG4P5--SPP1	6	44	HCG4P5	1499	chr6:29910346:-	SPP1	5077	chr4:88896902:+	INCL_NON_REF_SPLICE	YES	7	0	0.88	1	0.0668	0.4895	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0.88	1	0.5563	TRUE	0	1	0	4	1	TRUE	ACH-000016
SLR21_KIDNEY	HCG4P5--SPP1	5	47	HCG4P5	1492	chr6:29910353:-	SPP1	5057	chr4:88896882:+	INCL_NON_REF_SPLICE	YES	9	0	0.85	1	0.0556	0.5229	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0.85	1	0.5785	TRUE	0	1	0	4	1	TRUE	ACH-000016
SLR21_KIDNEY	HCG4P5--SPP1	5	42	HCG4P5	1515	chr6:29910330:-	SPP1	5082	chr4:88896907:+	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.0556	0.4673	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0.89	1	0.5229	TRUE	0	1	0	4	1	TRUE	ACH-000016
SLR21_KIDNEY	HCG4P5--SPP1	3	46	HCG4P5	1515	chr6:29910330:-	SPP1	5071	chr4:88896896:+	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.0334	0.5118	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0.89	1	0.5452	TRUE	0	1	0	4	1	TRUE	ACH-000016
SLR21_KIDNEY	FER1L4--ARHGEF12	2	0	FER1L4	18104	chr20:34164303:-	ARHGEF12	29956	chr11:120207946:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	FER1L4->chr20:34146507-34195484:-,fer-1_like_family_member_4,_pseudogene,ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+	SLR21_KIDNEY	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000016
SLR21_KIDNEY	NKTR--ARF4	2	0	NKTR	1451	chr3:42642556:+	ARF4	33959	chr3:57570191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NKTR->chr3:42642106-42690227:+,natural_killer_cell_triggering_receptor,ARF4->ADP_ribosylation_factor_4,chr3:57557090-57583947:-	SLR21_KIDNEY	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000016
SLR21_KIDNEY	RP11-656D10.3--RP11-227G15.3	2	0	RP11-656D10.3	1073	chr1:40974261:-	RP11-227G15.3	8925	chr17:30685522:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP11-656D10.3->chr1:40958829-40974333:-,RP11-227G15.3->chr17:30651450-30687719:+	SLR21_KIDNEY	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000016
SLR21_KIDNEY	STON2--SEPT9	2	0	STON2	2681	chr14:81893446:-	SEPT9	51579	chr17:75478226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	STON2->chr14:81727000-81902809:-,stonin_2,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	SLR21_KIDNEY	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000016
SLR21_KIDNEY	ZCCHC17--ARID1A	2	0	ZCCHC17	4340	chr1:31792013:+	ARID1A	17709	chr1:27056142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	ZCCHC17->chr1:31769842-31837783:+,zinc_finger_CCHC-type_containing_17,ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+	SLR21_KIDNEY	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000016
SLR21_KIDNEY	RP11-467J12.4--CASC16	1	2	RP11-467J12.4	2192	chr16:53081117:-	CASC16	7619	chr16:52682024:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0111	0.0223	RP11-467J12.4->chr16:53069602-53086785:-,CASC16->cancer_susceptibility_candidate_16_(non-protein_coding),chr16:52586002-52686017:-	SLR21_KIDNEY	0.75	1	0.0334	TRUE	0	6	0	3	6	TRUE	ACH-000016
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	686	14	IGH@	94754	chr14:106330024:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	0	132	1	0.84	7.554	0.1542	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	7.7082	TRUE	0	0	0	6	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	478	10	IGH@	94353	chr14:106330425:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	132	1	0.79	5.2636	0.1101	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	5.3737	TRUE	0	0	0	5	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	179	24	IGH@	95370	chr14:106329408:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	0	132	1	0.61	1.9711	0.2643	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	2.2354	TRUE	0	0	0	6	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	174	10	IGH@	93161	chr14:106331617:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	132	0.99	0.58	1.916	0.1101	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.99	2.0261	TRUE	0	0	0	5	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAF13--SORT1	159	0	TAF13	1082	chr1:109618543:-	SORT1	24923	chr1:109878968:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.7508	0	TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-,SORT1->chr1:109852192-109940573:-,sortilin_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.7508	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITPK1--ISM2	78	52	ITPK1	12607	chr14:93418291:-	ISM2	24406	chr14:77951262:-	ONLY_REF_SPLICE	YES	146	0	0.47	1	0.8589	0.5726	{Klijn_CCL:Lymphoid=1},ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,ISM2->chr14:77940740-77965210:-,isthmin_2	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	1.4315	TRUE	0	0	0	2	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRF--B4GALT2	70	22	PTPRF	27948	chr1:44079386:+	B4GALT2	42159	chr1:44450537:+	ONLY_REF_SPLICE	YES	63	37	0.59	0.71	0.7708	0.2423	{Klijn_CCL:Lymphoid=1},PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F,B4GALT2->beta-1,4-galactosyltransferase_2,chr1:44444615-44456840:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.71	1.0131	TRUE	0	0	0	2	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	48	34	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	205	0	0.29	1	0.5286	0.3744	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.903	TRUE	1	0	0	4	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAF13--SORT1	32	19	TAF13	2016	chr1:109617609:-	SORT1	24923	chr1:109878968:-	ONLY_REF_SPLICE	YES	61	6	0.46	0.89	0.3524	0.2092	TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-,SORT1->chr1:109852192-109940573:-,sortilin_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.89	0.5616	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	21	4	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	54237	chr4:90640977:+	ONLY_REF_SPLICE	YES	14	0	0.64	1	0.2312	0.044	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.2752	TRUE	0	2	0	2	2	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	10	34	RP11-353N4.6	2221	chr1:149576702:+	RP11-403I13.7	14803	chr1:149284650:+	INCL_NON_REF_SPLICE	YES	210	0	0.17	1	0.1101	0.3744	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.4845	TRUE	1	0	0	4	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	5	34	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	210	0	0.16	1	0.0551	0.3744	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.4295	TRUE	1	0	0	4	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	3	33	RP11-353N4.6	3136	chr1:149577617:+	RP11-403I13.7	14811	chr1:149284658:+	INCL_NON_REF_SPLICE	NO	205	0	0.15	1	0.033	0.3634	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.3964	TRUE	1	0	0	4	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TM9SF3--DLEU7-AS1	7	13	TM9SF3	5040	chr10:98325061:-	DLEU7-AS1	24674	chr13:51381990:+	INCL_NON_REF_SPLICE	YES	338	0	0.06	1	0.0771	0.1432	TM9SF3->chr10:98277866-98347209:-,transmembrane_9_superfamily_member_3,DLEU7-AS1->DLEU7_antisense_RNA_1,chr13:51381992-51423190:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.2203	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITPK1--ISM2	2	30	ITPK1	11539	chr14:93424546:-	ISM2	24406	chr14:77951262:-	ONLY_REF_SPLICE	NO	137	0	0.19	1	0.022	0.3303	{Klijn_CCL:Lymphoid=1},ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,ISM2->chr14:77940740-77965210:-,isthmin_2	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.3523	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL4A3--AC073065.3	5	6	COL4A3	1249	chr2:228029529:+	AC073065.3	54315	chr2:228667871:+	INCL_NON_REF_SPLICE	YES	23	0	0.32	1	0.0551	0.0661	COL4A3->Oncogene{Bushman},chr2:228029281-228179508:+,collagen_type_IV_alpha_3,AC073065.3->chr2:228666556-228669421:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.1212	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	6	0	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	55584	chr4:90647535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0661	0	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	TRUE	0	0	0	2	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRMT10C--PCED1B	5	3	TRMT10C	1142	chr3:101280847:+	PCED1B	12139	chr12:47628790:+	ONLY_REF_SPLICE	YES	118	6	0.06	0.57	0.0551	0.033	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,PCED1B->PC-esterase_domain_containing_1B,chr12:47473386-47630443:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.57	0.0881	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--MMRN1	5	2	CCSER1	6160	chr4:91234198:+	MMRN1	52159	chr4:90872756:+	ONLY_REF_SPLICE	YES	11	2	0.39	0.78	0.0551	0.022	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.78	0.0771	TRUE	0	0	0	2	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	4	6	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	49506	chr4:90602748:+	INCL_NON_REF_SPLICE	YES	14	0	0.42	1	0.044	0.0661	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.1101	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--MMRN1	4	2	CCSER1	1297	chr4:91048982:+	MMRN1	41500	chr4:90815875:+	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.044	0.022	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.066	TRUE	0	3	0	5	3	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	2	10	IGH@	93369	chr14:106331409:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	1	132	0.92	0.08	0.022	0.1101	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.92	0.1321	TRUE	0	0	0	5	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	2	10	IGH@	93981	chr14:106330797:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	132	0.92	0.08	0.022	0.1101	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.92	0.1321	TRUE	0	0	0	5	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	3	5	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	50594	chr4:90612436:+	ONLY_REF_SPLICE	YES	14	0	0.36	1	0.033	0.0551	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.0881	TRUE	0	0	0	2	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL36	4	0	EIF1	1110	chr17:39845246:+	RPL36	11474	chr19:5690305:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL36->chr19:5674958-5691887:+,ribosomal_protein_L36	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP2B4--TRAF5	3	0	ATP2B4	1659	chr1:203596347:+	TRAF5	35269	chr1:211526581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,TRAF5->TNF_receptor_associated_factor_5,chr1:211499957-211548288:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALDOA--RP11-127H5.1	2	0	ALDOA	1410	chr16:30064820:+	RP11-127H5.1	22839	chr8:106258521:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,RP11-127H5.1->chr8:105602961-106431488:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	APOL2--SRGAP2C	2	0	APOL2	1514	chr22:36635487:-	SRGAP2C	15757	chr1:121124562:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	APOL2->apolipoprotein_L2,chr22:36622256-36636000:-,SRGAP2C->SLIT-ROBO_Rho_GTPase_activating_protein_2C,chr1:121107124-121129949:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP2B4--TRAF5	2	0	ATP2B4	1659	chr1:203596347:+	TRAF5	37498	chr1:211529709:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,TRAF5->TNF_receptor_associated_factor_5,chr1:211499957-211548288:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR1--CCDC11	2	0	PLSCR1	1398	chr3:146262254:-	CCDC11	21228	chr18:47778154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1,CCDC11->chr18:47753563-47792892:-	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2J3--NDUFA6	2	0	POLR2J3	5847	chr7:102207444:-	NDUFA6	20116	chr22:42483179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,NDUFA6->NADH:ubiquinone_oxidoreductase_subunit_A6,chr22:42481529-42486959:-	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP5C--SCAMP2	2	0	PPP5C	4437	chr19:46879831:+	SCAMP2	20009	chr15:75146990:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAD51B--SIPA1L1	2	0	RAD51B	11638	chr14:68353921:+	SIPA1L1	77452	chr14:72190364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+,SIPA1L1->chr14:71787166-72207946:+,signal_induced_proliferation_associated_1_like_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-435B5.4--AMY2B	2	0	RP11-435B5.4	2843	chr1:143465380:-	AMY2B	23635	chr1:104108057:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RP11-435B5.4->chr1:143354963-143467632:-,AMY2B->amylase,_alpha_2B_(pancreatic),chr1:104096437-104122156:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPA1--CENPN	2	0	RPA1	8958	chr17:1779087:+	CENPN	33887	chr16:81060131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RPA1->chr17:1732996-1803376:+,replication_protein_A1,CENPN->centromere_protein_N,chr16:81040103-81066719:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR75--CDON	2	0	WDR75	1146	chr2:190306304:+	CDON	26176	chr11:125893432:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	WDR75->WD_repeat_domain_75,chr2:190306159-190340291:+,CDON->cell_adhesion_associated,_oncogene_regulated,chr11:125825691-125933230:-	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZRANB3--PMS1	2	0	ZRANB3	2907	chr2:136261899:-	PMS1	41256	chr2:190656516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3,PMS1->Oncogene{Bushman},PMS1_homolog_1,_mismatch_repair_system_component,chr2:190649107-190742355:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
FADU_UPPER_AERODIGESTIVE_TRACT	TUBD1--VMP1	116	145	TUBD1	12167	chr17:57941025:-	VMP1	33780	chr17:57917129:+	ONLY_REF_SPLICE	YES	10	856	0.96	0.23	1.6166	2.0207	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[17235],TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.23	0.96	3.6373	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RFWD3--MLKL	92	5	RFWD3	1096	chr16:74700684:-	MLKL	28398	chr16:74719481:-	ONLY_REF_SPLICE	YES	9	90	0.92	0.52	1.2821	0.0697	LOCAL_REARRANGEMENT:-:[4974],RFWD3->chr16:74655292-74700779:-,ring_finger_and_WD_repeat_domain_3,MLKL->chr16:74705753-74734858:-,mixed_lineage_kinase_domain-like	FADU_UPPER_AERODIGESTIVE_TRACT	0.52	0.92	1.3518	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	HUWE1--ARHGAP6	40	93	HUWE1	2755	chrX:53710819:-	ARHGAP6	87055	chrX:11272827:-	ONLY_REF_SPLICE	YES	116	0	0.53	1	0.5574	1.2961	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.53	1	1.8535	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SELO--TUBGCP6	63	0	SELO	8142	chr22:50655511:+	TUBGCP6	27556	chr22:50656200:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.878	0	LOCAL_INVERSION:+:-:[73],SELO->chr22:50639408-50656045:+,TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.878	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MECP2--PDK3	34	74	MECP2	3066	chrX:153357642:-	PDK3	25632	chrX:24512859:+	ONLY_REF_SPLICE	YES	57	28	0.65	0.79	0.4738	1.0313	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,PDK3->chrX:24483338-24557954:+,pyruvate_dehydrogenase_kinase_3	FADU_UPPER_AERODIGESTIVE_TRACT	0.65	0.79	1.5051	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MECP2--PDK3	44	15	MECP2	1152	chrX:153363061:-	PDK3	25632	chrX:24512859:+	ONLY_REF_SPLICE	YES	9	28	0.87	0.68	0.6132	0.209	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,PDK3->chrX:24483338-24557954:+,pyruvate_dehydrogenase_kinase_3	FADU_UPPER_AERODIGESTIVE_TRACT	0.68	0.87	0.8222	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CSNK1G2--SCAMP4	29	14	CSNK1G2	8180	chr19:1969958:+	SCAMP4	21981	chr19:1914978:+	ONLY_REF_SPLICE	YES	123	1	0.26	0.98	0.4041	0.1951	{Klijn_CCL:Breast=1,Head-Neck=1},LOCAL_REARRANGEMENT:+:[15172],CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,SCAMP4->Oncogene{Bushman},chr19:1905213-1926016:+,secretory_carrier_membrane_protein_4	FADU_UPPER_AERODIGESTIVE_TRACT	0.26	0.98	0.5992	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	HUWE1--ARHGAP6	25	20	HUWE1	1459	chrX:53713215:-	ARHGAP6	87055	chrX:11272827:-	ONLY_REF_SPLICE	YES	27	0	0.62	1	0.3484	0.2787	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.6271	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	AC006486.1--GSK3A	28	1	AC006486.1	1621	chr19:42747547:+	GSK3A	9871	chr19:42741093:-	INCL_NON_REF_SPLICE	YES	0	106	1	0.21	0.3902	0.0139	LOCAL_INVERSION:+:-:[150],AC006486.1->chr19:42746927-42749125:+,GSK3A->chr19:42734338-42746777:-,glycogen_synthase_kinase_3_alpha	FADU_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.4041	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SUV420H1--CTD-2655K5.1	21	29	SUV420H1	1352	chr11:67980944:-	CTD-2655K5.1	23896	chr11:67897317:+	INCL_NON_REF_SPLICE	YES	172	1	0.23	0.98	0.2927	0.4041	LOCAL_INVERSION:-:+:[24345],SUV420H1->chr11:67922330-67981295:-,CTD-2655K5.1->chr11:67889520-67897985:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.23	0.98	0.6968	TRUE	0	1	0	1	1	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	C16orf72--RP11-473I1.6	25	10	C16orf72	2354	chr16:9186858:+	RP11-473I1.6	12562	chr16:9162369:+	INCL_NON_REF_SPLICE	YES	160	0	0.18	1	0.3484	0.1394	LOCAL_REARRANGEMENT:+:[19236],C16orf72->chr16:9185505-9215497:+,chromosome_16_open_reading_frame_72,RP11-473I1.6->chr16:9162411-9166269:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.18	1	0.4878	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	DIAPH3--KIAA1324L	20	28	DIAPH3	4716	chr13:60667762:-	KIAA1324L	38958	chr7:86594340:-	ONLY_REF_SPLICE	YES	53	5	0.48	0.91	0.2787	0.3902	{Klijn_CCL:Head-Neck=1},DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3,KIAA1324L->KIAA1324-like,chr7:86506222-86689015:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.48	0.91	0.6689	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	PPP6R3--PDE4DIP	20	15	PPP6R3	4527	chr11:68287119:+	PDE4DIP	43823	chr1:145021167:-	ONLY_REF_SPLICE	YES	428	0	0.08	1	0.2787	0.209	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	FADU_UPPER_AERODIGESTIVE_TRACT	0.08	1	0.4877	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	HINT3--NCOA7	20	10	HINT3	2516	chr6:126288150:+	NCOA7	34565	chr6:126249320:+	ONLY_REF_SPLICE	YES	87	75	0.26	0.29	0.2787	0.1394	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[25661],HINT3->chr6:126277927-126301387:+,histidine_triad_nucleotide_binding_protein_3,NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7	FADU_UPPER_AERODIGESTIVE_TRACT	0.26	0.29	0.4181	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	PHF8--PFKFB1	20	6	PHF8	4673	chrX:54069064:-	PFKFB1	37186	chrX:54989815:-	ONLY_REF_SPLICE	YES	86	0	0.23	1	0.2787	0.0836	PHF8->PHD_finger_protein_8,chrX:53963109-54075391:-,PFKFB1->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_1,chrX:54959394-55024967:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.23	1	0.3623	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	TUBD1--VMP1	7	43	TUBD1	10970	chr17:57943970:-	VMP1	33780	chr17:57917129:+	ONLY_REF_SPLICE	YES	81	856	0.38	0.06	0.0976	0.5993	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[17235],TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.06	0.38	0.6969	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	GSK3A--NUCB1	14	12	GSK3A	3671	chr19:42744107:-	NUCB1	17625	chr19:49414406:+	ONLY_REF_SPLICE	YES	105	489	0.2	0.05	0.1951	0.1672	GSK3A->chr19:42734338-42746777:-,glycogen_synthase_kinase_3_alpha,NUCB1->chr19:49403307-49426629:+,nucleobindin_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.05	0.2	0.3623	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	ALDOA--KRT17	13	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1812	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.1812	TRUE	0	0	0	10	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	AC006486.1--GSK3A	9	10	AC006486.1	1761	chr19:42747687:+	GSK3A	9871	chr19:42741093:-	INCL_NON_REF_SPLICE	YES	1	106	0.95	0.15	0.1254	0.1394	LOCAL_INVERSION:+:-:[150],AC006486.1->chr19:42746927-42749125:+,GSK3A->chr19:42734338-42746777:-,glycogen_synthase_kinase_3_alpha	FADU_UPPER_AERODIGESTIVE_TRACT	0.15	0.95	0.2648	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SUV420H1--CTD-2655K5.1	3	29	SUV420H1	1691	chr11:67980605:-	CTD-2655K5.1	23896	chr11:67897317:+	INCL_NON_REF_SPLICE	YES	278	1	0.1	0.97	0.0418	0.4041	LOCAL_INVERSION:-:+:[24345],SUV420H1->chr11:67922330-67981295:-,CTD-2655K5.1->chr11:67889520-67897985:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.1	0.97	0.4459	TRUE	0	1	0	1	1	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MRPS6--SLC37A1	7	12	MRPS6	1522	chr21:35446045:+	SLC37A1	22670	chr21:43954808:+	ONLY_REF_SPLICE	YES	498	32	0.04	0.37	0.0976	0.1672	MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,SLC37A1->chr21:43916118-44001550:+,solute_carrier_family_37_member_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.04	0.37	0.2648	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CHKA--PPM1L	8	4	CHKA	2767	chr11:67864486:-	PPM1L	25774	chr3:160679524:+	ONLY_REF_SPLICE	YES	65	10	0.16	0.55	0.1115	0.0557	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,PPM1L->chr3:160473390-160796695:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1L	FADU_UPPER_AERODIGESTIVE_TRACT	0.16	0.55	0.1672	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RRAGA--FAM154A	6	10	RRAGA	1313	chr9:19049684:+	FAM154A	7032	chr9:18950935:-	INCL_NON_REF_SPLICE	YES	158	0	0.09	1	0.0836	0.1394	LOCAL_INVERSION:+:-:[16121],RRAGA->Ras_related_GTP_binding_A,chr9:19049372-19051019:+,FAM154A->chr9:18927656-19033251:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.223	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	TDRD3--DMTF1	6	8	TDRD3	17365	chr13:61109367:+	DMTF1	35744	chr7:86810625:+	ONLY_REF_SPLICE	YES	21	54	0.4	0.21	0.0836	0.1115	GTEx&tcga_normals:1/3694=0.03%,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3,DMTF1->Oncogene{Bushman},chr7:86781677-86825653:+,cyclin_D_binding_myb_like_transcription_factor_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.21	0.4	0.1951	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	AC073343.13--USP42	7	2	AC073343.13	2135	chr7:6704739:+	USP42	30261	chr7:6199081:+	ONLY_REF_SPLICE	YES	0	34	1	0.21	0.0976	0.0279	AC073343.13->chr7:6703605-6748532:+,USP42->chr7:6144515-6201195:+,ubiquitin_specific_peptidase_42	FADU_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.1255	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MRPS6--SLC37A1	3	17	MRPS6	8835	chr21:35515028:+	SLC37A1	22670	chr21:43954808:+	INCL_NON_REF_SPLICE	YES	240	32	0.08	0.38	0.0418	0.2369	MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,SLC37A1->chr21:43916118-44001550:+,solute_carrier_family_37_member_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.08	0.38	0.2787	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	PPP6R3--PDE4DIP	3	15	PPP6R3	5723	chr11:68290157:+	PDE4DIP	43823	chr1:145021167:-	ONLY_REF_SPLICE	YES	433	0	0.04	1	0.0418	0.209	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	FADU_UPPER_AERODIGESTIVE_TRACT	0.04	1	0.2508	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MRPS6--SLC37A1	3	14	MRPS6	7514	chr21:35497780:+	SLC37A1	22670	chr21:43954808:+	ONLY_REF_SPLICE	YES	390	32	0.04	0.35	0.0418	0.1951	MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,SLC37A1->chr21:43916118-44001550:+,solute_carrier_family_37_member_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.04	0.35	0.2369	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--ARHGAP6	4	5	RP11-120D5.1	4510	chrX:11074056:-	ARHGAP6	22334	chrX:11272827:-	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0557	0.0697	LOCAL_REARRANGEMENT:-:[6978],RP11-120D5.1->chrX:10865996-11129261:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.82	1	0.1254	TRUE	0	1	0	1	1	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	C16orf72--RP11-473I1.6	4	4	C16orf72	2354	chr16:9186858:+	RP11-473I1.6	13704	chr16:9164710:+	ONLY_REF_SPLICE	YES	160	0	0.05	1	0.0557	0.0557	LOCAL_REARRANGEMENT:+:[19236],C16orf72->chr16:9185505-9215497:+,chromosome_16_open_reading_frame_72,RP11-473I1.6->chr16:9162411-9166269:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.1114	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MECP2--PDK3	2	7	MECP2	1152	chrX:153363061:-	PDK3	26774	chrX:24516946:+	ONLY_REF_SPLICE	YES	9	41	0.5	0.18	0.0279	0.0976	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,PDK3->chrX:24483338-24557954:+,pyruvate_dehydrogenase_kinase_3	FADU_UPPER_AERODIGESTIVE_TRACT	0.18	0.5	0.1255	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CSNK1G2--SCAMP4	1	10	CSNK1G2	8180	chr19:1969958:+	SCAMP4	23547	chr19:1917693:+	ONLY_REF_SPLICE	YES	123	41	0.08	0.21	0.0139	0.1394	{Klijn_CCL:Breast=1,Head-Neck=1},LOCAL_REARRANGEMENT:+:[15172],CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,SCAMP4->Oncogene{Bushman},chr19:1905213-1926016:+,secretory_carrier_membrane_protein_4	FADU_UPPER_AERODIGESTIVE_TRACT	0.08	0.21	0.1533	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	DIAPH3--KIAA1324L	1	10	DIAPH3	4716	chr13:60667762:-	KIAA1324L	40079	chr7:86577238:-	ONLY_REF_SPLICE	NO	53	12	0.17	0.48	0.0139	0.1394	{Klijn_CCL:Head-Neck=1},DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3,KIAA1324L->KIAA1324-like,chr7:86506222-86689015:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.17	0.48	0.1533	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	HUWE1--ARHGAP6	1	9	HUWE1	1141	chrX:53713533:-	ARHGAP6	87055	chrX:11272827:-	ONLY_REF_SPLICE	YES	30	0	0.25	1	0.0139	0.1254	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.25	1	0.1393	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	ALDOA--KRT17	3	0	ALDOA	7448	chr16:30077220:+	KRT17	15339	chr17:39780762:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	10	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SETD8--CDK2AP1	3	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	18	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--ARHGAP6	1	5	RP11-120D5.1	2349	chrX:11125021:-	ARHGAP6	22334	chrX:11272827:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0139	0.0697	LOCAL_REARRANGEMENT:-:[6978],RP11-120D5.1->chrX:10865996-11129261:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.0836	TRUE	0	1	0	1	1	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	C17orf76-AS1--EIF4G2	2	0	C17orf76-AS1	1593	chr17:16342728:+	EIF4G2	21226	chr11:10822634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	C17orf76-AS1->chr17:16342136-16381992:+,EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	2	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CHURC1--RAB15	2	0	CHURC1	2310	chr14:65390844:+	RAB15	17423	chr14:65419289:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_INVERSION:+:-:[1223],CHURC1->chr14:65381079-65411309:+,churchill_domain_containing_1,RAB15->RAB15,_member_RAS_oncogene_family,chr14:65412532-65439494:-	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CLSTN1--CTNNBIP1	2	0	CLSTN1	1884	chr1:9883701:-	CTNNBIP1	29326	chr1:9910834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[23750],CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,CTNNBIP1->catenin_beta_interacting_protein_1,chr1:9908334-9970394:-	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MECP2--PDK3	2	0	MECP2	1152	chrX:153363061:-	PDK3	30302	chrX:24537050:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,PDK3->chrX:24483338-24557954:+,pyruvate_dehydrogenase_kinase_3	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	PPM1D--CASC8	2	0	PPM1D	1704	chr17:58678247:+	CASC8	21457	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--ARHGAP6	2	0	RP11-120D5.1	4510	chrX:11074056:-	ARHGAP6	23494	chrX:11215116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:-:[6978],RP11-120D5.1->chrX:10865996-11129261:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SPIDR--EIF3E	2	0	SPIDR	7740	chr8:48206619:+	EIF3E	47723	chr8:109254142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	WIPF2--RAPGEFL1	2	0	WIPF2	1617	chr17:38376172:+	RAPGEFL1	29949	chr17:38349615:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	WWOX--VAT1L	2	0	WWOX	10605	chr16:78198186:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	6	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	ZNF76--PSMB1	2	0	ZNF76	1819	chr6:35227504:+	PSMB1	19676	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	ZNF76->chr6:35226686-35263762:+,zinc_finger_protein_76,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	PTPRS--DAGLA	1	2	PTPRS	1140	chr19:5340675:-	DAGLA	43369	chr11:61487584:+	ONLY_REF_SPLICE	YES	17	2	0.15	0.6	0.0139	0.0279	PTPRS->chr19:5158506-5340814:-,protein_tyrosine_phosphatase,_receptor_type_S,DAGLA->chr11:61447905-61514473:+,diacylglycerol_lipase_alpha	FADU_UPPER_AERODIGESTIVE_TRACT	0.15	0.6	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	PPP6R3--PDE4DIP	1	1	PPP6R3	1110	chr11:68228295:+	PDE4DIP	43823	chr1:145021167:-	ONLY_REF_SPLICE	NO	12	0	0.14	1	0.0139	0.0139	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	FADU_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000846
ACCMESO1_PLEURA	GPATCH8--LSM12	69	54	GPATCH8	2180	chr17:42552197:-	LSM12	27477	chr17:42117624:-	ONLY_REF_SPLICE	YES	21	191	0.85	0.39	0.9764	0.7641	GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-,LSM12->LSM12_homolog,chr17:42112003-42144987:-	ACCMESO1_PLEURA	0.39	0.85	1.7405	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	ASPH--RP11-32K4.1	23	22	ASPH	1328	chr8:62626828:-	RP11-32K4.1	54939	chr8:65046071:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.3255	0.3113	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,RP11-32K4.1->chr8:64599737-65281115:-	ACCMESO1_PLEURA	0.98	1	0.6368	TRUE	0	1	0	1	1	TRUE	ACH-000086
ACCMESO1_PLEURA	ASPH--RP11-32K4.1	9	31	ASPH	1328	chr8:62626828:-	RP11-32K4.1	51750	chr8:65143176:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.1274	0.4387	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,RP11-32K4.1->chr8:64599737-65281115:-	ACCMESO1_PLEURA	0.98	1	0.5661	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	MTAP--RP11-399D6.2	12	12	MTAP	12211	chr9:21859424:+	RP11-399D6.2	28909	chr9:22820737:+	ONLY_REF_SPLICE	YES	86	0	0.22	1	0.1698	0.1698	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	ACCMESO1_PLEURA	0.22	1	0.3396	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	ASPH--RP11-32K4.1	4	30	ASPH	1328	chr8:62626828:-	RP11-32K4.1	51753	chr8:65143173:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.0566	0.4245	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,RP11-32K4.1->chr8:64599737-65281115:-	ACCMESO1_PLEURA	0.97	1	0.4811	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	ASPH--RP11-32K4.1	4	25	ASPH	1328	chr8:62626828:-	RP11-32K4.1	53867	chr8:65063721:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.0566	0.3538	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,RP11-32K4.1->chr8:64599737-65281115:-	ACCMESO1_PLEURA	0.97	1	0.4104	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	GPATCH8--LSM12	2	29	GPATCH8	2180	chr17:42552197:-	LSM12	28587	chr17:42114906:-	ONLY_REF_SPLICE	YES	21	172	0.6	0.15	0.0283	0.4104	GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-,LSM12->LSM12_homolog,chr17:42112003-42144987:-	ACCMESO1_PLEURA	0.15	0.6	0.4387	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	GPATCH8--LSM12	1	11	GPATCH8	2180	chr17:42552197:-	LSM12	29825	chr17:42113668:-	ONLY_REF_SPLICE	NO	21	213	0.36	0.05	0.0142	0.1557	GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-,LSM12->LSM12_homolog,chr17:42112003-42144987:-	ACCMESO1_PLEURA	0.05	0.36	0.1699	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	MTAP--RP11-399D6.2	2	4	MTAP	9899	chr9:21854869:+	RP11-399D6.2	28909	chr9:22820737:+	ONLY_REF_SPLICE	YES	61	0	0.09	1	0.0283	0.0566	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	ACCMESO1_PLEURA	0.09	1	0.0849	TRUE	0	1	0	1	1	TRUE	ACH-000086
ACCMESO1_PLEURA	ARL13B--UBLCP1	2	0	ARL13B	1344	chr3:93699326:+	UBLCP1	25863	chr5:158705246:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	ARL13B->ADP_ribosylation_factor_like_GTPase_13B,chr3:93698983-93774512:+,UBLCP1->chr5:158690089-158713044:+,ubiquitin_like_domain_containing_CTD_phosphatase_1	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	EIF3G--AHSA1	2	0	EIF3G	2253	chr19:10229344:-	AHSA1	13861	chr14:77930941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	EIF3G->chr19:10225693-10230596:-,eukaryotic_translation_initiation_factor_3_subunit_G,AHSA1->activator_of_Hsp90_ATPase_activity_1,chr14:77924213-77935817:+	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	EPB41L2--QKI	2	0	EPB41L2	1181	chr6:131384282:-	QKI	47252	chr6:163876311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	EPB41L2->chr6:131160487-131384462:-,erythrocyte_membrane_protein_band_4.1_like_2,QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	RCC1--SPARC	2	0	RCC1	2175	chr1:28834672:+	SPARC	22570	chr5:151055762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	RP11-435B5.4--ATP6V1H	2	0	RP11-435B5.4	2843	chr1:143465380:-	ATP6V1H	37813	chr8:54656250:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	RP11-435B5.4->chr1:143354963-143467632:-,ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	UBALD1--SKI	2	0	UBALD1	1350	chr16:4664679:-	SKI	13018	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	UBALD1->UBA_like_domain_containing_1,chr16:4658884-4665028:-,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	ZBTB17--SZRD1	2	0	ZBTB17	2237	chr1:16299534:-	SZRD1	20278	chr1:16717870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	ZBTB17->chr1:16268364-16302627:-,zinc_finger_and_BTB_domain_containing_17,SZRD1->SUZ_RNA_binding_domain_containing_1,chr1:16679070-16724640:+	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
MHHES1_BONE	EWSR1--FLI1	263	57	EWSR1	11554	chr22:29683123:+	FLI1	35098	chr11:128651853:+	ONLY_REF_SPLICE	YES	229	1	0.58	1	2.5574	0.5543	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	MHHES1_BONE	0.58	1	3.1117	TRUE	0	0	0	5	0	TRUE	ACH-000391
MHHES1_BONE	ADAM9--ANKFY1	143	48	ADAM9	1292	chr8:38854679:+	ANKFY1	58266	chr17:4075975:-	ONLY_REF_SPLICE	YES	87	39	0.69	0.83	1.3905	0.4667	{Klijn_CCL:Sarcomatoid=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,ANKFY1->ankyrin_repeat_and_FYVE_domain_containing_1,chr17:4067201-4167274:-	MHHES1_BONE	0.69	0.83	1.8572	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	ADAM9--ANKFY1	28	19	ADAM9	1292	chr8:38854679:+	ANKFY1	59391	chr17:4074155:-	ONLY_REF_SPLICE	YES	87	38	0.35	0.55	0.2723	0.1848	{Klijn_CCL:Sarcomatoid=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,ANKFY1->ankyrin_repeat_and_FYVE_domain_containing_1,chr17:4067201-4167274:-	MHHES1_BONE	0.35	0.55	0.4571	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	RBM4--ADAM18	24	2	RBM4	3939	chr11:66407594:+	ADAM18	27347	chr8:39502857:+	ONLY_REF_SPLICE	YES	500	0	0.05	1	0.2334	0.0194	RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,ADAM18->ADAM_metallopeptidase_domain_18,chr8:39442008-39587583:+	MHHES1_BONE	0.05	1	0.2528	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	ADAM9--ANKFY1	4	20	ADAM9	1292	chr8:38854679:+	ANKFY1	58340	chr17:4075901:-	INCL_NON_REF_SPLICE	YES	87	25	0.22	0.49	0.0389	0.1945	{Klijn_CCL:Sarcomatoid=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,ANKFY1->ankyrin_repeat_and_FYVE_domain_containing_1,chr17:4067201-4167274:-	MHHES1_BONE	0.22	0.49	0.2334	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	HEXIM2--NMT1	6	2	HEXIM2	3160	chr17:43240226:+	NMT1	19914	chr17:43180319:+	ONLY_REF_SPLICE	YES	5	187	0.62	0.04	0.0583	0.0194	{Klijn_CCL:Sarcomatoid=1},LOCAL_REARRANGEMENT:+:[51683],HEXIM2->chr17:43238067-43247407:+,hexamethylene_bisacetamide_inducible_2,NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+	MHHES1_BONE	0.04	0.62	0.0777	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	AL136376.1--RPS28	6	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MHHES1_BONE	1	1	0.0583	TRUE	0	0	0	12	0	TRUE	ACH-000391
MHHES1_BONE	PVRL3--ANKRD20A14P	6	0	PVRL3	2694	chr3:110791024:+	ANKRD20A14P	23763	chr1:142803532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0583	0	PVRL3->chr3:110788918-110994410:+,ANKRD20A14P->ankyrin_repeat_domain_20_family_member_A14,_pseudogene,chr1:142803532-142827235:+	MHHES1_BONE	1	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	B4GALT1--ZNF730	2	0	B4GALT1	2835	chr9:33135187:-	ZNF730	17633	chr19:23316882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,ZNF730->chr19:23258012-23330021:+,zinc_finger_protein_730	MHHES1_BONE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	CA5B--TARS	2	0	CA5B	8332	chrX:15782898:+	TARS	42452	chr5:33466976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	CA5B->carbonic_anhydrase_5B,chrX:15706953-15805747:+,TARS->chr5:33440802-33469644:+,threonyl-tRNA_synthetase	MHHES1_BONE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	DLG2--ZNF131	2	0	DLG2	40013	chr11:83344254:-	ZNF131	74051	chr5:43122141:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	DLG2->chr11:83166055-85338966:-,discs_large_homolog_2,ZNF131->chr5:43065278-43192123:+,zinc_finger_protein_131	MHHES1_BONE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	IER2--ZADH2	2	0	IER2	1138	chr19:13261366:+	ZADH2	11382	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	IER2->Oncogene{Bushman},chr19:13261229-13265722:+,immediate_early_response_2,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	MHHES1_BONE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	NUMB--PARD3	2	0	NUMB	7519	chr14:73876645:-	PARD3	42737	chr10:34667034:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	MHHES1_BONE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	XRN2--DAPK1	2	0	XRN2	1170	chr20:21284111:+	DAPK1	52469	chr9:90311922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,DAPK1->Oncogene{Bushman},chr9:90112143-90323548:+,death_associated_protein_kinase_1	MHHES1_BONE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	AC002066.1--AC006159.3	1	2	AC002066.1	1112	chr7:116139408:-	AC006159.3	13900	chr7:116213798:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0097	0.0194	LOCAL_REARRANGEMENT:-:[71495],AC002066.1->chr7:115878314-116139519:-,AC006159.3->chr7:116211014-116254874:-	MHHES1_BONE	0.5	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000391
RERFLCAD1_LUNG	KPNA1--PARP9	77	18	KPNA1	1189	chr3:122233604:-	PARP9	27507	chr3:122278556:-	ONLY_REF_SPLICE	YES	145	12	0.4	0.89	0.6639	0.1552	LOCAL_REARRANGEMENT:-:[12979],KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1,PARP9->chr3:122246771-122283424:-,poly(ADP-ribose)_polymerase_family_member_9	RERFLCAD1_LUNG	0.4	0.89	0.8191	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	MICB--RP1-40E16.9	18	8	MICB	3991	chr6:31473648:+	RP1-40E16.9	12113	chr6:3191464:-	ONLY_REF_SPLICE	YES	50	0	0.34	1	0.1552	0.069	MICB->MHC_class_I_polypeptide-related_sequence_B,chr6:31462658-31478901:+,RP1-40E16.9->chr6:3182978-3195990:-	RERFLCAD1_LUNG	0.34	1	0.2242	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	MICB--RP1-40E16.9	16	4	MICB	3991	chr6:31473648:+	RP1-40E16.9	13517	chr6:3183960:-	ONLY_REF_SPLICE	YES	50	3	0.29	0.87	0.138	0.0345	MICB->MHC_class_I_polypeptide-related_sequence_B,chr6:31462658-31478901:+,RP1-40E16.9->chr6:3182978-3195990:-	RERFLCAD1_LUNG	0.29	0.87	0.1725	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	KPNA1--PARP9	15	0	KPNA1	1071	chr3:122233722:-	PARP9	27507	chr3:122278556:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1293	0	LOCAL_REARRANGEMENT:-:[12979],KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1,PARP9->chr3:122246771-122283424:-,poly(ADP-ribose)_polymerase_family_member_9	RERFLCAD1_LUNG	1	1	0.1293	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	MTRF1--ELF1	8	6	MTRF1	12608	chr13:41797392:-	ELF1	29712	chr13:41508164:-	ONLY_REF_SPLICE	YES	8	66	0.64	0.17	0.069	0.0517	MTRF1->chr13:41790505-41837742:-,mitochondrial_translational_release_factor_1,ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-	RERFLCAD1_LUNG	0.17	0.64	0.1207	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	RP11-386G11.10--P4HB	9	0	RP11-386G11.10	1422	chr12:49521986:+	P4HB	16899	chr17:79801485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0	RP11-386G11.10->chr12:49521565-49541652:+,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	RERFLCAD1_LUNG	1	1	0.0776	TRUE	0	1	0	2	1	TRUE	ACH-000791
RERFLCAD1_LUNG	KPNA1--PARP9	4	18	KPNA1	1189	chr3:122233604:-	PARP9	27510	chr3:122278553:-	INCL_NON_REF_SPLICE	YES	145	11	0.13	0.67	0.0345	0.1552	LOCAL_REARRANGEMENT:-:[12979],KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1,PARP9->chr3:122246771-122283424:-,poly(ADP-ribose)_polymerase_family_member_9	RERFLCAD1_LUNG	0.13	0.67	0.1897	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	TUBA1C--CTSD	7	0	TUBA1C	10785	chr12:49666442:+	CTSD	19559	chr11:1778652:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,CTSD->cathepsin_D,chr11:1773982-1785222:-	RERFLCAD1_LUNG	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	HIVEP1--HNRNPLP1	6	0	HIVEP1	4047	chr6:12015901:+	HNRNPLP1	26308	chr6:7482787:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	HIVEP1->Oncogene{Bushman},chr6:12008995-12165232:+,human_immunodeficiency_virus_type_I_enhancer_binding_protein_1,HNRNPLP1->chr6:7481327-7482827:-,heterogeneous_nuclear_ribonucleoprotein_L_pseudogene_1	RERFLCAD1_LUNG	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	GMDS--HFE	4	3	GMDS	1372	chr6:2245555:-	HFE	25917	chr6:26093347:+	ONLY_REF_SPLICE	YES	10	23	0.41	0.23	0.0345	0.0259	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,HFE->Oncogene{Bushman},chr6:26087509-26098571:+,hemochromatosis	RERFLCAD1_LUNG	0.23	0.41	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	GMDS--HFE	3	3	GMDS	1372	chr6:2245555:-	HFE	25483	chr6:26092913:+	ONLY_REF_SPLICE	YES	10	15	0.38	0.29	0.0259	0.0259	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,HFE->Oncogene{Bushman},chr6:26087509-26098571:+,hemochromatosis	RERFLCAD1_LUNG	0.29	0.38	0.0518	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	PDRG1--C20orf112	3	0	PDRG1	4450	chr20:30534299:-	C20orf112	26521	chr20:31044198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	PDRG1->chr20:30532758-30539895:-,p53_and_DNA_damage_regulated_1,C20orf112->chr20:31030862-31172876:-	RERFLCAD1_LUNG	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	GMDS--HFE	2	3	GMDS	1372	chr6:2245555:-	HFE	24131	chr6:26091542:+	ONLY_REF_SPLICE	YES	10	23	0.33	0.18	0.0172	0.0259	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,HFE->Oncogene{Bushman},chr6:26087509-26098571:+,hemochromatosis	RERFLCAD1_LUNG	0.18	0.33	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	FASTKD2--GLS	2	0	FASTKD2	1391	chr2:207630471:+	GLS	21438	chr2:191765290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	FASTKD2->FAST_kinase_domains_2,chr2:207630081-207657233:+,GLS->chr2:191745553-191830278:+,glutaminase	RERFLCAD1_LUNG	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	GMDS--HFE	2	0	GMDS	1372	chr6:2245555:-	HFE	27202	chr6:26094632:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,HFE->Oncogene{Bushman},chr6:26087509-26098571:+,hemochromatosis	RERFLCAD1_LUNG	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	IFI35--PRKCB	2	0	IFI35	2461	chr17:41164294:+	PRKCB	24358	chr16:24185839:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	IFI35->chr17:41158742-41166473:+,interferon_induced_protein_35,PRKCB->chr16:23847322-24231932:+,protein_kinase_C_beta	RERFLCAD1_LUNG	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	RP11-89K10.1--PCAT1	1	2	RP11-89K10.1	2156	chr8:127601535:+	PCAT1	14438	chr8:127889917:+	ONLY_REF_SPLICE	NO	6	0	0.33	1	0.0086	0.0172	RP11-89K10.1->chr8:127570120-127725660:+,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	RERFLCAD1_LUNG	0.33	1	0.0258	TRUE	0	4	0	4	4	TRUE	ACH-000791
L33_PANCREAS	WDR62--HCST	120	51	WDR62	14566	chr19:36572472:+	HCST	35378	chr19:36394253:+	ONLY_REF_SPLICE	YES	38	0	0.82	1	1.2706	0.54	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,HCST->chr19:36393382-36395279:+,hematopoietic_cell_signal_transducer	L33_PANCREAS	0.82	1	1.8106	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	RP11-152F13.7--CDKL4	51	57	RP11-152F13.7	1307	chr15:82945079:+	CDKL4	11492	chr2:39440613:-	ONLY_REF_SPLICE	YES	91	0	0.54	1	0.54	0.6036	RP11-152F13.7->chr15:82944773-82974312:+,CDKL4->chr2:39402787-39456729:-,cyclin_dependent_kinase_like_4	L33_PANCREAS	0.54	1	1.1436	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	SPA17--TYR	46	22	SPA17	2621	chr11:124545314:+	TYR	19494	chr11:89017941:+	ONLY_REF_SPLICE	YES	38	0	0.64	1	0.4871	0.2329	SPA17->Oncogene{Bushman},chr11:124543694-124567414:+,sperm_autoantigenic_protein_17,TYR->chr11:88910620-89028927:+,tyrosinase	L33_PANCREAS	0.64	1	0.72	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	RP11-152F13.7--CDKL4	11	36	RP11-152F13.7	1257	chr15:82945029:+	CDKL4	11492	chr2:39440613:-	ONLY_REF_SPLICE	YES	88	0	0.35	1	0.1165	0.3812	RP11-152F13.7->chr15:82944773-82974312:+,CDKL4->chr2:39402787-39456729:-,cyclin_dependent_kinase_like_4	L33_PANCREAS	0.35	1	0.4977	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	WDR62--HCST	4	52	WDR62	14566	chr19:36572472:+	HCST	34560	chr19:36393435:+	INCL_NON_REF_SPLICE	YES	38	0	0.6	1	0.0424	0.5506	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,HCST->chr19:36393382-36395279:+,hematopoietic_cell_signal_transducer	L33_PANCREAS	0.6	1	0.593	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	P2RX5--TBC1D28	16	2	P2RX5	6527	chr17:3591306:-	TBC1D28	25052	chr17:18539910:-	ONLY_REF_SPLICE	YES	42	0	0.3	1	0.1694	0.0212	P2RX5->chr17:3575493-3599698:-,purinergic_receptor_P2X_5,TBC1D28->TBC1_domain_family_member_28,chr17:18538319-18565263:-	L33_PANCREAS	0.3	1	0.1906	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	FUCA1--CNR2	13	0	FUCA1	5977	chr1:24180850:-	CNR2	15597	chr1:24202152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1377	0	LOCAL_REARRANGEMENT:-:[2232],FUCA1->chr1:24171567-24194784:-,fucosidase,_alpha-L-_1,_tissue,CNR2->Oncogene{Bushman},cannabinoid_receptor_2,chr1:24197016-24285549:-	L33_PANCREAS	1	1	0.1377	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	SLCO1B1--LINC00941	7	6	SLCO1B1	15160	chr12:21377773:+	LINC00941	21603	chr12:30951079:+	ONLY_REF_SPLICE	YES	9	24	0.59	0.35	0.0741	0.0635	SLCO1B1->chr12:21284136-21392180:+,solute_carrier_organic_anion_transporter_family_member_1B1,LINC00941->chr12:30947977-30955645:+,long_intergenic_non-protein_coding_RNA_941	L33_PANCREAS	0.35	0.59	0.1376	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	SLCO1B1--LINC00941	5	5	SLCO1B1	15160	chr12:21377773:+	LINC00941	22774	chr12:30952847:+	ONLY_REF_SPLICE	YES	9	28	0.53	0.26	0.0529	0.0529	SLCO1B1->chr12:21284136-21392180:+,solute_carrier_organic_anion_transporter_family_member_1B1,LINC00941->chr12:30947977-30955645:+,long_intergenic_non-protein_coding_RNA_941	L33_PANCREAS	0.26	0.53	0.1058	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	ARHGAP10--EDNRA	4	1	ARHGAP10	1393	chr4:148653606:+	EDNRA	41705	chr4:148457029:+	ONLY_REF_SPLICE	YES	3	1	0.62	0.83	0.0424	0.0106	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	L33_PANCREAS	0.62	0.83	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	SPA17--TYR	3	1	SPA17	2621	chr11:124545314:+	TYR	20676	chr11:89028311:+	ONLY_REF_SPLICE	YES	38	7	0.1	0.36	0.0318	0.0106	SPA17->Oncogene{Bushman},chr11:124543694-124567414:+,sperm_autoantigenic_protein_17,TYR->chr11:88910620-89028927:+,tyrosinase	L33_PANCREAS	0.1	0.36	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	SLC41A1--KRIT1	3	0	SLC41A1	3541	chr1:205779616:-	KRIT1	22293	chr7:91870430:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	SLC41A1->chr1:205758221-205782876:-,solute_carrier_family_41_member_1,KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-	L33_PANCREAS	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	YME1L1--CENPV	3	0	YME1L1	21038	chr10:27406505:-	CENPV	33154	chr17:16248025:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	YME1L1->YME1_like_1_ATPase,chr10:27399383-27444195:-,CENPV->centromere_protein_V,chr17:16245848-16256970:-	L33_PANCREAS	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	BCAT1--SLCO1A2	2	3	BCAT1	1533	chr12:25101861:-	SLCO1A2	33953	chr12:21487638:-	ONLY_REF_SPLICE	YES	61	10	0.08	0.33	0.0212	0.0318	BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,SLCO1A2->chr12:21417534-21572528:-,solute_carrier_organic_anion_transporter_family_member_1A2	L33_PANCREAS	0.08	0.33	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	ARHGAP10--EDNRA	2	2	ARHGAP10	1393	chr4:148653606:+	EDNRA	40506	chr4:148453658:+	ONLY_REF_SPLICE	YES	3	2	0.57	0.67	0.0212	0.0212	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	L33_PANCREAS	0.57	0.67	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	RERE--RP6-109B7.2	1	6	RERE	2669	chr1:8852463:-	RP6-109B7.2	42332	chr22:46452395:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0106	0.0635	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,RP6-109B7.2->chr22:46451620-46454040:-	L33_PANCREAS	0.64	1	0.0741	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	BCAT1--SLCO1A2	1	5	BCAT1	1533	chr12:25101861:-	SLCO1A2	32617	chr12:21527459:-	ONLY_REF_SPLICE	NO	61	10	0.09	0.38	0.0106	0.0529	BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,SLCO1A2->chr12:21417534-21572528:-,solute_carrier_organic_anion_transporter_family_member_1A2	L33_PANCREAS	0.09	0.38	0.0635	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	BCAT1--SLCO1A2	1	4	BCAT1	1533	chr12:25101861:-	SLCO1A2	33948	chr12:21487643:-	ONLY_REF_SPLICE	YES	61	10	0.08	0.33	0.0106	0.0424	BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,SLCO1A2->chr12:21417534-21572528:-,solute_carrier_organic_anion_transporter_family_member_1A2	L33_PANCREAS	0.08	0.33	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	C17orf76-AS1--WDR43	2	0	C17orf76-AS1	1593	chr17:16342728:+	WDR43	25416	chr2:29150435:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	C17orf76-AS1->chr17:16342136-16381992:+,WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	L33_PANCREAS	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	DIS3L--HSP90B1	2	0	DIS3L	12187	chr15:66615272:+	HSP90B1	24819	chr12:104326055:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	DIS3L->DIS3_like_exosome_3'-5'_exoribonuclease,chr15:66585555-66626236:+,HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1	L33_PANCREAS	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	IKZF2--CYBRD1	2	0	IKZF2	5217	chr2:214012432:-	CYBRD1	31713	chr2:172398095:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,CYBRD1->chr2:172378757-172414643:+,cytochrome_b_reductase_1	L33_PANCREAS	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	MED31--SNX27	2	0	MED31	2279	chr17:6553676:-	SNX27	9572	chr1:151611364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	MED31->chr17:6546635-6554954:-,mediator_complex_subunit_31,SNX27->chr1:151584541-151671567:+,sorting_nexin_family_member_27	L33_PANCREAS	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	SLCO3A1--ST8SIA1	1	4	SLCO3A1	13963	chr15:92671719:+	ST8SIA1	41568	chr12:22408323:-	ONLY_REF_SPLICE	YES	71	0	0.07	1	0.0106	0.0424	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,ST8SIA1->ST8_alpha-N-acetyl-neuraminide_alpha-2,8-sialyltransferase_1,chr12:22216707-22589975:-	L33_PANCREAS	0.07	1	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	WDR44--NOL11	2	0	WDR44	16188	chrX:117570787:+	NOL11	37569	chr17:65733624:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	WDR44->WD_repeat_domain_44,chrX:117480036-117583924:+,NOL11->chr17:65713949-65740647:+,nucleolar_protein_11	L33_PANCREAS	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	DOCK4--IMMP2L	1	1	DOCK4	13779	chr7:111575595:-	IMMP2L	65595	chr7:111161505:-	ONLY_REF_SPLICE	NO	0	3	1	0.4	0.0106	0.0106	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	L33_PANCREAS	0.4	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	RERE--RP6-109B7.2	1	1	RERE	1484	chr1:8877219:-	RP6-109B7.2	42332	chr22:46452395:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0106	0.0106	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,RP6-109B7.2->chr22:46451620-46454040:-	L33_PANCREAS	0.4	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPRD1A--DTNA	289	168	RPRD1A	1323	chr18:33647217:-	DTNA	35714	chr18:32335940:+	ONLY_REF_SPLICE	YES	247	24	0.65	0.95	3.3795	1.9645	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.95	5.344	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTGES3--MFSD5	191	258	PTGES3	1378	chr12:57081782:-	MFSD5	12912	chr12:53645489:+	ONLY_REF_SPLICE	YES	1115	18	0.29	0.96	2.2335	3.017	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,MFSD5->chr12:53645035-53648189:+,major_facilitator_superfamily_domain_containing_5	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.96	5.2505	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPS2--RP11-473E2.4	170	117	MRPS2	2990	chr9:138393819:+	RP11-473E2.4	9794	chr9:137436766:+	ONLY_REF_SPLICE	YES	245	0	0.54	1	1.9879	1.3682	MRPS2->chr9:138391830-138396519:+,mitochondrial_ribosomal_protein_S2,RP11-473E2.4->chr9:137419028-137437090:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	3.3561	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF41--LARP4	81	17	RNF41	3641	chr12:56607742:-	LARP4	35750	chr12:50867198:+	ONLY_REF_SPLICE	YES	186	61	0.35	0.62	0.9472	0.1988	{Klijn_CCL:Lymphoid=1},RNF41->chr12:56598285-56615717:-,ring_finger_protein_41,LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.62	1.146	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTGES3--MFSD5	1	261	PTGES3	2126	chr12:57081034:-	MFSD5	12912	chr12:53645489:+	ONLY_REF_SPLICE	YES	1149	18	0.19	0.94	0.0117	3.0521	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,MFSD5->chr12:53645035-53648189:+,major_facilitator_superfamily_domain_containing_5	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.94	3.0638	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED13L--SLC26A10	53	35	MED13L	29179	chr12:116412976:-	SLC26A10	44872	chr12:58015511:+	INCL_NON_REF_SPLICE	YES	152	3	0.37	0.97	0.6198	0.4093	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,SLC26A10->chr12:58013310-58019934:+,solute_carrier_family_26_member_10	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.97	1.0291	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FMN1--TFDP2	56	19	FMN1	30151	chr15:33149216:-	TFDP2	55919	chr3:141724386:-	ONLY_REF_SPLICE	YES	50	40	0.6	0.65	0.6548	0.2222	FMN1->chr15:33057747-33486897:-,formin_1,TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.65	0.877	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED13L--SLC26A10	29	16	MED13L	29179	chr12:116412976:-	SLC26A10	45703	chr12:58016342:+	ONLY_REF_SPLICE	YES	152	19	0.23	0.7	0.3391	0.1871	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,SLC26A10->chr12:58013310-58019934:+,solute_carrier_family_26_member_10	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.7	0.5262	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG248L24.12--SPP1	30	3	XXbac-BPG248L24.12	1474	chr6:31324897:+	SPP1	5039	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	52	0	0.39	1	0.3508	0.0351	XXbac-BPG248L24.12->chr6:31324424-31325414:+,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.3859	TRUE	0	0	0	5	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV2-14	19	24	AC096579.7	1523	chr2:89165131:-	IGKV2-14	8879	chr2:89377826:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.2222	0.2806	AC096579.7->chr2:89130700-89165653:-,IGKV2-14->chr2:89377506-89378280:-,immunoglobulin_kappa_variable_2-14_(pseudogene)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.5028	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPRD1A--DTNA	2	91	RPRD1A	1323	chr18:33647217:-	DTNA	37913	chr18:32345925:+	ONLY_REF_SPLICE	NO	247	24	0.27	0.79	0.0234	1.0641	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.79	1.0875	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UNC13C--TIPIN	21	7	UNC13C	25898	chr15:54786932:+	TIPIN	55343	chr15:66633694:-	ONLY_REF_SPLICE	YES	0	92	1	0.23	0.2456	0.0819	UNC13C->chr15:54305101-54920806:+,unc-13_homolog_C_(C._elegans),TIPIN->TIMELESS_interacting_protein,chr15:66628544-66679084:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.3275	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF2B1--RNF41	18	7	EIF2B1	7078	chr12:124109334:-	RNF41	19820	chr12:56602082:-	ONLY_REF_SPLICE	YES	242	137	0.09	0.15	0.2105	0.0819	EIF2B1->chr12:124104953-124118313:-,eukaryotic_translation_initiation_factor_2B_subunit_alpha,RNF41->chr12:56598285-56615717:-,ring_finger_protein_41	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.15	0.2924	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK4--IMMP2L	16	4	DOCK4	1310	chr7:111846157:-	IMMP2L	72389	chr7:110603621:-	ONLY_REF_SPLICE	YES	23	5	0.47	0.8	0.1871	0.0468	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.8	0.2339	TRUE	0	2	0	1	2	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPRD1A--DTNA	4	45	RPRD1A	1323	chr18:33647217:-	DTNA	38994	chr18:32374001:+	ONLY_REF_SPLICE	YES	247	81	0.17	0.38	0.0468	0.5262	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.38	0.573	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF41--LARP4	8	20	RNF41	4603	chr12:56606780:-	LARP4	35750	chr12:50867198:+	ONLY_REF_SPLICE	YES	195	61	0.13	0.31	0.0935	0.2339	{Klijn_CCL:Lymphoid=1},RNF41->chr12:56598285-56615717:-,ring_finger_protein_41,LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.31	0.3274	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	U2SURP--FAM194A	11	7	U2SURP	28777	chr3:142762118:+	FAM194A	44225	chr3:150404141:-	ONLY_REF_SPLICE	YES	169	1	0.1	0.95	0.1286	0.0819	U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+,FAM194A->chr3:150377672-150421758:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.95	0.2105	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	7	18	AP003900.6	1122	chr21:11169841:+	AC011718.2	10100	chr22:20656924:-	INCL_NON_REF_SPLICE	YES	8	0	0.76	1	0.0819	0.2105	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.2924	TRUE	0	0	0	11	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL17A--PIK3R4	7	4	ARL17A	4664	chr17:44634731:-	PIK3R4	32955	chr3:130409498:-	ONLY_REF_SPLICE	YES	39	47	0.22	0.19	0.0819	0.0468	ARL17A->ADP_ribosylation_factor_like_GTPase_17A,chr17:44594068-44657088:-,PIK3R4->chr3:130397779-130465673:-,phosphoinositide-3-kinase_regulatory_subunit_4	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.22	0.1287	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FMN1--TFDP2	3	19	FMN1	30151	chr15:33149216:-	TFDP2	53305	chr3:141772991:-	ONLY_REF_SPLICE	YES	50	39	0.31	0.36	0.0351	0.2222	FMN1->chr15:33057747-33486897:-,formin_1,TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.36	0.2573	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-43E15.3--CTB-43E15.2	5	8	CTB-43E15.3	3044	chr5:173145844:-	CTB-43E15.2	10911	chr5:173128532:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.0585	0.0935	LOCAL_INVERSION:-:+:[1765],CTB-43E15.3->chr5:173134617-173173214:-,CTB-43E15.2->chr5:173116462-173132852:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.152	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCC2--TIPIN	6	2	SMARCC2	4680	chr12:56578628:-	TIPIN	28441	chr15:66645293:-	ONLY_REF_SPLICE	YES	212	2	0.04	0.8	0.0702	0.0234	SMARCC2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_2,chr12:56556767-56583351:-,TIPIN->TIMELESS_interacting_protein,chr15:66628544-66679084:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.8	0.0936	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SYNRG--ACACA	4	6	SYNRG	23787	chr17:35900482:-	ACACA	55607	chr17:35646430:-	ONLY_REF_SPLICE	YES	32	32	0.24	0.24	0.0468	0.0702	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.24	0.117	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2V1--PABPC1L	3	9	UBE2V1	1475	chr20:48732022:-	PABPC1L	25184	chr20:43560474:+	INCL_NON_REF_SPLICE	YES	18	80	0.4	0.13	0.0351	0.1052	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.4	0.1403	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2V1--PABPC1L	3	8	UBE2V1	1475	chr20:48732022:-	PABPC1L	25305	chr20:43560595:+	INCL_NON_REF_SPLICE	YES	18	57	0.38	0.16	0.0351	0.0935	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.38	0.1286	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2V1--PABPC1L	3	8	UBE2V1	1475	chr20:48732022:-	PABPC1L	25693	chr20:43560983:+	ONLY_REF_SPLICE	YES	18	84	0.38	0.12	0.0351	0.0935	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.38	0.1286	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-43E15.3--CTB-43E15.2	4	2	CTB-43E15.3	1192	chr5:173173023:-	CTB-43E15.2	10911	chr5:173128532:+	ONLY_REF_SPLICE	YES	141	0	0.04	1	0.0468	0.0234	LOCAL_INVERSION:-:+:[1765],CTB-43E15.3->chr5:173134617-173173214:-,CTB-43E15.2->chr5:173116462-173132852:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF2A--POTEA	4	0	EIF2A	2225	chr3:150270212:+	POTEA	28606	chr8:43197022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0	EIF2A->chr3:150264465-150302029:+,eukaryotic_translation_initiation_factor_2A,POTEA->POTE_ankyrin_domain_family_member_A,chr8:43147626-43218661:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SYNRG--ACACA	3	3	SYNRG	23787	chr17:35900482:-	ACACA	56718	chr17:35641871:-	ONLY_REF_SPLICE	YES	32	32	0.16	0.16	0.0351	0.0351	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.16	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2V1--PABPC1L	3	2	UBE2V1	1475	chr20:48732022:-	PABPC1L	27537	chr20:43564032:+	ONLY_REF_SPLICE	YES	18	97	0.22	0.05	0.0351	0.0234	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.22	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2V1--PABPC1L	1	5	UBE2V1	1475	chr20:48732022:-	PABPC1L	26423	chr20:43561713:+	ONLY_REF_SPLICE	NO	18	92	0.25	0.06	0.0117	0.0585	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.25	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2V1--PABPC1L	1	5	UBE2V1	1261	chr20:48732236:-	PABPC1L	26408	chr20:43561698:+	ONLY_REF_SPLICE	YES	32	90	0.16	0.06	0.0117	0.0585	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.16	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BABAM1--ADAM28	2	0	BABAM1	1178	chr19:17378336:+	ADAM28	37920	chr8:24207377:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	BABAM1->BRISC_and_BRCA1_A_complex_member_1,chr19:17378159-17392058:+,ADAM28->ADAM_metallopeptidase_domain_28,chr8:24151553-24216531:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CYB5R3--SLBP	2	0	CYB5R3	1274	chr22:43045301:-	SLBP	20460	chr4:1701797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	CYB5R3->chr22:43013846-43045574:-,cytochrome_b5_reductase_3,SLBP->chr4:1694527-1714282:-,stem-loop_binding_protein	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--SURF4	2	0	DANCR	1530	chr4:53579126:+	SURF4	8570	chr9:136234321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SURF4->chr9:136228325-136242970:-,surfeit_4	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERN1--CHMP1A	2	0	ERN1	1844	chr17:62207336:-	CHMP1A	37604	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC11--RSL1D1	2	0	TXNDC11	1402	chr16:11836333:-	RSL1D1	23734	chr16:11941663:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	LOCAL_REARRANGEMENT:-:[92322],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,RSL1D1->chr16:11929056-11945442:-,ribosomal_L1_domain_containing_1	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-43E15.3--CTB-43E15.2	1	3	CTB-43E15.3	3044	chr5:173145844:-	CTB-43E15.2	12069	chr5:173132593:+	ONLY_REF_SPLICE	YES	4	1	0.5	0.8	0.0117	0.0351	LOCAL_INVERSION:-:+:[1765],CTB-43E15.3->chr5:173134617-173173214:-,CTB-43E15.2->chr5:173116462-173132852:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.8	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000821
KMBC2_URINARY_TRACT	GTF3C2--GPN1	248	26	GTF3C2	3234	chr2:27573181:-	GPN1	20431	chr2:27852726:+	ONLY_REF_SPLICE	YES	2	15	0.99	0.95	3.4814	0.365	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	KMBC2_URINARY_TRACT	0.95	0.99	3.8464	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	ZNF292--FGD5-AS1	113	124	ZNF292	2606	chr6:87865477:+	FGD5-AS1	31587	chr3:14987661:-	ONLY_REF_SPLICE	YES	1	155	1	0.6	1.5863	1.7407	ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,FGD5-AS1->FGD5_antisense_RNA_1,chr3:14961854-14989931:-	KMBC2_URINARY_TRACT	0.6	1	3.327	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	SLC25A3--KRT13	97	0	SLC25A3	3178	chr12:98989546:+	KRT13	12099	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3617	0	GTEx&tcga_normals:11/3694=0.30%,SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3,KRT13->chr17:39657233-39661957:-,keratin_13	KMBC2_URINARY_TRACT	1	1	1.3617	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	FKBP1A--BORA	53	28	FKBP1A	1329	chr20:1373478:-	BORA	12454	chr13:73303064:+	ONLY_REF_SPLICE	YES	300	0	0.21	1	0.744	0.3931	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,BORA->bora,_aurora_kinase_A_activator,chr13:73302061-73330336:+	KMBC2_URINARY_TRACT	0.21	1	1.1371	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	GPN1--GTF3C2	53	15	GPN1	1923	chr2:27852036:+	GTF3C2	21512	chr2:27566445:-	ONLY_REF_SPLICE	YES	12	3	0.85	0.96	0.744	0.2106	GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+,GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2	KMBC2_URINARY_TRACT	0.85	0.96	0.9546	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	GTF3C2--GPN1	44	9	GTF3C2	1263	chr2:27579606:-	GPN1	20431	chr2:27852726:+	ONLY_REF_SPLICE	YES	1	15	0.98	0.78	0.6177	0.1263	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	KMBC2_URINARY_TRACT	0.78	0.98	0.744	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	GTF3C2--GPN1	31	14	GTF3C2	1915	chr2:27578954:-	GPN1	20431	chr2:27852726:+	ONLY_REF_SPLICE	YES	2	15	0.96	0.75	0.4352	0.1965	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	KMBC2_URINARY_TRACT	0.75	0.96	0.6317	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	ZNF292--FGD5-AS1	29	22	ZNF292	2606	chr6:87865477:+	FGD5-AS1	35958	chr3:14965605:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.4071	0.3088	ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,FGD5-AS1->FGD5_antisense_RNA_1,chr3:14961854-14989931:-	KMBC2_URINARY_TRACT	0.98	1	0.7159	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	ZNF292--POPDC3	12	9	ZNF292	2606	chr6:87865477:+	POPDC3	31579	chr6:105610035:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1685	0.1263	ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,POPDC3->chr6:105606155-105627870:-,popeye_domain_containing_3	KMBC2_URINARY_TRACT	0.95	1	0.2948	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	EPB41L1--ATP5E	12	0	EPB41L1	21898	chr20:34782176:+	ATP5E	45620	chr20:57601117:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1685	0	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,ATP5E->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_epsilon_subunit,chr20:57600522-57607437:-	KMBC2_URINARY_TRACT	1	1	0.1685	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	FKBP1A--BORA	10	6	FKBP1A	1329	chr20:1373478:-	BORA	15775	chr13:73312100:+	ONLY_REF_SPLICE	YES	300	39	0.05	0.29	0.1404	0.0842	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,BORA->bora,_aurora_kinase_A_activator,chr13:73302061-73330336:+	KMBC2_URINARY_TRACT	0.05	0.29	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	FKBP1A--BORA	6	8	FKBP1A	1329	chr20:1373478:-	BORA	14729	chr13:73309098:+	ONLY_REF_SPLICE	YES	300	40	0.04	0.26	0.0842	0.1123	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,BORA->bora,_aurora_kinase_A_activator,chr13:73302061-73330336:+	KMBC2_URINARY_TRACT	0.04	0.26	0.1965	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	SDCBP2-AS1--SUPT20H	8	0	SDCBP2-AS1	8121	chr20:1355342:+	SUPT20H	29028	chr13:37603973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1123	0	SDCBP2-AS1->SDCBP2_antisense_RNA_1,chr20:1306049-1359378:+,SUPT20H->SPT20_homolog,_SAGA_complex_component,chr13:37583449-37633850:-	KMBC2_URINARY_TRACT	1	1	0.1123	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	LRP6--ATP8A2	5	4	LRP6	8939	chr12:12332744:-	ATP8A2	65735	chr13:26343184:+	ONLY_REF_SPLICE	YES	19	0	0.32	1	0.0702	0.0562	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	KMBC2_URINARY_TRACT	0.32	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	LRP6--ATP8A2	5	3	LRP6	7767	chr12:12333977:-	ATP8A2	65735	chr13:26343184:+	ONLY_REF_SPLICE	YES	13	0	0.38	1	0.0702	0.0421	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	KMBC2_URINARY_TRACT	0.38	1	0.1123	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	GTF3C2--GPN1	1	14	GTF3C2	3234	chr2:27573181:-	GPN1	21525	chr2:27853894:+	ONLY_REF_SPLICE	NO	2	52	0.88	0.22	0.014	0.1965	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	KMBC2_URINARY_TRACT	0.22	0.88	0.2105	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	CTD-3116E22.6--ZNF274	4	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	KMBC2_URINARY_TRACT	1	1	0.0562	TRUE	0	0	0	13	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	GTF3C2--GPN1	1	4	GTF3C2	1263	chr2:27579606:-	GPN1	23131	chr2:27855500:+	ONLY_REF_SPLICE	YES	1	74	0.83	0.06	0.014	0.0562	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	KMBC2_URINARY_TRACT	0.06	0.83	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	CDC42SE2--CTD-2410N18.5	1	1	CDC42SE2	5200	chr5:130599859:+	CTD-2410N18.5	21445	chr5:133509713:-	ONLY_REF_SPLICE	YES	15	1	0.12	0.67	0.014	0.014	CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,CTD-2410N18.5->chr5:133502861-133561762:-	KMBC2_URINARY_TRACT	0.12	0.67	0.028	TRUE	0	1	0	3	1	TRUE	ACH-000862
PK1_PANCREAS	SREBF1--TOM1L2	182	127	SREBF1	1285	chr17:17740041:-	TOM1L2	33791	chr17:17754266:-	ONLY_REF_SPLICE	YES	193	90	0.62	0.77	2.2152	1.5458	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[6503],SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1,TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein	PK1_PANCREAS	0.62	0.77	3.761	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	SREBF1--TOM1L2	6	95	SREBF1	1285	chr17:17740041:-	TOM1L2	34941	chr17:17752173:-	ONLY_REF_SPLICE	YES	193	80	0.34	0.56	0.073	1.1563	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[6503],SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1,TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein	PK1_PANCREAS	0.34	0.56	1.2293	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	SREBF1--TOM1L2	8	56	SREBF1	1285	chr17:17740041:-	TOM1L2	35978	chr17:17751097:-	ONLY_REF_SPLICE	YES	193	90	0.25	0.42	0.0974	0.6816	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[6503],SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1,TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein	PK1_PANCREAS	0.25	0.42	0.779	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	C2CD2--DSCAM	10	4	C2CD2	15385	chr21:43321731:-	DSCAM	29584	chr21:41741172:-	ONLY_REF_SPLICE	YES	7	0	0.67	1	0.1217	0.0487	C2CD2->C2_calcium-dependent_domain_containing_2,chr21:43305221-43373999:-,DSCAM->Down_syndrome_cell_adhesion_molecule,chr21:41382926-42219065:-	PK1_PANCREAS	0.67	1	0.1704	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	WWP2--NFAT5	8	0	WWP2	1086	chr16:69796294:+	NFAT5	54483	chr16:69724843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0974	0	LOCAL_REARRANGEMENT:+:[57640],WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+,NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive	PK1_PANCREAS	1	1	0.0974	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	ITGA3--TUBB	4	0	ITGA3	12301	chr17:48153818:+	TUBB	28691	chr6:30691270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3,TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	PK1_PANCREAS	1	1	0.0487	TRUE	0	0	0	5	0	TRUE	ACH-000307
PK1_PANCREAS	RP11-1023L17.1--CDH12	3	1	RP11-1023L17.1	4445	chr5:34218400:-	CDH12	31145	chr5:21975494:-	ONLY_REF_SPLICE	NO	7	0	0.36	1	0.0365	0.0122	RP11-1023L17.1->chr5:34164803-34244901:-,CDH12->cadherin_12,chr5:21750782-22853731:-	PK1_PANCREAS	0.36	1	0.0487	TRUE	0	1	0	1	1	TRUE	ACH-000307
PK1_PANCREAS	ERCC1--EHD2	3	0	ERCC1	16708	chr19:45911096:-	EHD2	30510	chr19:48245765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,EHD2->EH_domain_containing_2,chr19:48216600-48246391:+	PK1_PANCREAS	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	MYO15B--UBALD2	2	2	MYO15B	5783	chr17:73588921:+	UBALD2	37085	chr17:74266275:+	ONLY_REF_SPLICE	YES	0	30	1	0.12	0.0243	0.0243	MYO15B->chr17:73584139-73622929:+,myosin_XVB,UBALD2->UBA_like_domain_containing_2,chr17:74261283-74267375:+	PK1_PANCREAS	0.12	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	ALCAM--TFG	2	0	ALCAM	1573	chr3:105086325:+	TFG	34330	chr3:100451352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ALCAM->activated_leukocyte_cell_adhesion_molecule,chr3:105085753-105295744:+,TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	CALM2--TTC7A	2	0	CALM2	1161	chr2:47403580:-	TTC7A	28805	chr2:47233061:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_v2:{count=2;pct=0.02%;dist=Heart_-_Atrial_Appendage=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[83945],CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	2	0	TRUE	ACH-000307
PK1_PANCREAS	ERCC1--EHD2	2	0	ERCC1	10963	chr19:45920079:-	EHD2	22869	chr19:48221766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,EHD2->EH_domain_containing_2,chr19:48216600-48246391:+	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	FAM49B--GNAS	2	0	FAM49B	1760	chr8:131028616:-	GNAS	46049	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx&tcga_normals:1/3694=0.03%,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	HDLBP--THAP4	2	0	HDLBP	2464	chr2:242254985:-	THAP4	44071	chr2:242545888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein,THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-	PK1_PANCREAS	1	1	0.0243	TRUE	0	2	0	4	1	TRUE	ACH-000307
PK1_PANCREAS	ITGB1--NRP1	2	0	ITGB1	7027	chr10:33247073:-	NRP1	43211	chr10:33515217:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	HGNC_GENEFAM,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1,NRP1->chr10:33466420-33625190:-,neuropilin_1	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	JMJD1C--OBFC1	2	0	JMJD1C	1468	chr10:65225255:-	OBFC1	42592	chr10:105652010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,OBFC1->chr10:105642300-105677963:-,oligonucleotide/oligosaccharide_binding_fold_containing_1	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	LMAN2L--RMI2	2	0	LMAN2L	5311	chr2:97399256:-	RMI2	20200	chr16:11444499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LMAN2L->chr2:97371666-97405801:-,lectin,_mannose_binding_2_like,RMI2->Oncogene{Bushman},RecQ_mediated_genome_instability_2,chr16:11343476-11445619:+	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	MBTPS1--WARS	2	0	MBTPS1	1172	chr16:84150340:-	WARS	44758	chr14:100828258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	MBTPS1->chr16:84087368-84150511:-,membrane_bound_transcription_factor_peptidase,_site_1,WARS->chr14:100800125-100843142:-,tryptophanyl-tRNA_synthetase	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	PPP4R1--VAPA	2	0	PPP4R1	2015	chr18:9614224:-	VAPA	33688	chr18:9931807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	PK1_PANCREAS	1	1	0.0243	TRUE	0	1	0	3	0	TRUE	ACH-000307
PK1_PANCREAS	TNRC18--RNF216	2	0	TNRC18	13009	chr7:5415665:-	RNF216	49243	chr7:5792610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	MYO15B--UBALD2	1	1	MYO15B	5244	chr17:73588382:+	UBALD2	37085	chr17:74266275:+	ONLY_REF_SPLICE	YES	0	30	1	0.06	0.0122	0.0122	MYO15B->chr17:73584139-73622929:+,myosin_XVB,UBALD2->UBA_like_domain_containing_2,chr17:74261283-74267375:+	PK1_PANCREAS	0.06	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000307
PATU8902_PANCREAS	ACTN4--SIPA1L3	369	346	ACTN4	1259	chr19:39138547:+	SIPA1L3	51086	chr19:38673159:+	ONLY_REF_SPLICE	YES	2774	149	0.2	0.83	3.7992	3.5624	GTEx&tcga_normals:1/3694=0.03%,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	PATU8902_PANCREAS	0.2	0.83	7.3616	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	ATF1--POP5	257	146	ATF1	1598	chr12:51158090:+	POP5	14340	chr12:121019247:-	INCL_NON_REF_SPLICE	YES	120	0	0.77	1	2.646	1.5032	ATF1->Oncogene{Bushman},activating_transcription_factor_1,chr12:51157493-51214905:+,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PATU8902_PANCREAS	0.77	1	4.1492	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	CSTF3--EIF3M	92	99	CSTF3	15502	chr11:33120236:-	EIF3M	28830	chr11:32608558:+	ONLY_REF_SPLICE	YES	79	168	0.71	0.53	0.9472	1.0193	{Klijn_CCL:Pancreas=1},CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3,EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M	PATU8902_PANCREAS	0.53	0.71	1.9665	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	EIF3M--RP11-624D11.2	80	47	EIF3M	1132	chr11:32605475:+	RP11-624D11.2	18633	chr11:30066002:-	ONLY_REF_SPLICE	YES	65	0	0.66	1	0.8237	0.4839	EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M,RP11-624D11.2->chr11:30065605-30105890:-	PATU8902_PANCREAS	0.66	1	1.3076	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	TNPO2--RFX1	79	47	TNPO2	9353	chr19:12821435:-	RFX1	25026	chr19:14094407:-	ONLY_REF_SPLICE	YES	107	8	0.54	0.94	0.8134	0.4839	{Klijn_CCL:Pancreas=1},TNPO2->chr19:12810008-12834825:-,transportin_2,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	PATU8902_PANCREAS	0.54	0.94	1.2973	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	EPN2--SPACA3	66	18	EPN2	17086	chr17:19185390:+	SPACA3	35751	chr17:31302845:+	ONLY_REF_SPLICE	YES	133	0	0.39	1	0.6795	0.1853	EPN2->chr17:19118928-19240028:+,epsin_2,SPACA3->chr17:31297394-31324895:+,sperm_acrosome_associated_3	PATU8902_PANCREAS	0.39	1	0.8648	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	WWOX--VAT1L	15	4	WWOX	10605	chr16:78198186:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	60	0	0.24	1	0.1544	0.0412	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	PATU8902_PANCREAS	0.24	1	0.1956	TRUE	0	0	0	6	0	TRUE	ACH-000599
PATU8902_PANCREAS	EPN2--SPACA3	8	31	EPN2	18723	chr17:19187027:+	SPACA3	35751	chr17:31302845:+	ONLY_REF_SPLICE	YES	116	0	0.25	1	0.0824	0.3192	EPN2->chr17:19118928-19240028:+,epsin_2,SPACA3->chr17:31297394-31324895:+,sperm_acrosome_associated_3	PATU8902_PANCREAS	0.25	1	0.4016	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	IFT80--LCA5	11	19	IFT80	14478	chr3:160073801:-	LCA5	42008	chr6:80202364:-	ONLY_REF_SPLICE	YES	142	12	0.17	0.71	0.1133	0.1956	IFT80->chr3:159974774-160117668:-,intraflagellar_transport_80,LCA5->Leber_congenital_amaurosis_5,chr6:80194708-80247175:-	PATU8902_PANCREAS	0.17	0.71	0.3089	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	EPN2--SPACA3	5	26	EPN2	18494	chr17:19186798:+	SPACA3	35751	chr17:31302845:+	INCL_NON_REF_SPLICE	YES	148	0	0.17	1	0.0515	0.2677	EPN2->chr17:19118928-19240028:+,epsin_2,SPACA3->chr17:31297394-31324895:+,sperm_acrosome_associated_3	PATU8902_PANCREAS	0.17	1	0.3192	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	EPN2--SPACA3	6	20	EPN2	17086	chr17:19185390:+	SPACA3	35747	chr17:31302841:+	INCL_NON_REF_SPLICE	YES	133	0	0.16	1	0.0618	0.2059	EPN2->chr17:19118928-19240028:+,epsin_2,SPACA3->chr17:31297394-31324895:+,sperm_acrosome_associated_3	PATU8902_PANCREAS	0.16	1	0.2677	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	ATF1--POP5	1	33	ATF1	1598	chr12:51158090:+	POP5	15861	chr12:121017726:-	ONLY_REF_SPLICE	NO	120	405	0.22	0.08	0.0103	0.3398	ATF1->Oncogene{Bushman},activating_transcription_factor_1,chr12:51157493-51214905:+,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PATU8902_PANCREAS	0.08	0.22	0.3501	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	ATF1--POP5	8	0	ATF1	1032	chr12:51157524:+	POP5	14340	chr12:121019247:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0824	0	ATF1->Oncogene{Bushman},activating_transcription_factor_1,chr12:51157493-51214905:+,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PATU8902_PANCREAS	1	1	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	TUBB4B--FTH1	6	0	TUBB4B	1128	chr9:140135792:+	FTH1	6697	chr11:61734931:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0618	0	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	PATU8902_PANCREAS	1	1	0.0618	TRUE	0	0	0	6	0	TRUE	ACH-000599
PATU8902_PANCREAS	EPN2--SPACA3	2	13	EPN2	18723	chr17:19187027:+	SPACA3	39006	chr17:31322427:+	ONLY_REF_SPLICE	YES	116	8	0.11	0.65	0.0206	0.1338	EPN2->chr17:19118928-19240028:+,epsin_2,SPACA3->chr17:31297394-31324895:+,sperm_acrosome_associated_3	PATU8902_PANCREAS	0.11	0.65	0.1544	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	TMC7--SYT17	3	6	TMC7	5209	chr16:19033118:+	SYT17	36889	chr16:19236005:+	ONLY_REF_SPLICE	YES	30	18	0.23	0.33	0.0309	0.0618	TMC7->chr16:18995256-19075264:+,transmembrane_channel_like_7,SYT17->chr16:19179293-19279652:+,synaptotagmin_17	PATU8902_PANCREAS	0.23	0.33	0.0927	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	EPN2--SPACA3	2	6	EPN2	7037	chr17:19140844:+	SPACA3	35751	chr17:31302845:+	ONLY_REF_SPLICE	YES	70	0	0.1	1	0.0206	0.0618	EPN2->chr17:19118928-19240028:+,epsin_2,SPACA3->chr17:31297394-31324895:+,sperm_acrosome_associated_3	PATU8902_PANCREAS	0.1	1	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	TMC7--SYT17	2	6	TMC7	6292	chr16:19034517:+	SYT17	36889	chr16:19236005:+	ONLY_REF_SPLICE	YES	23	18	0.26	0.31	0.0206	0.0618	TMC7->chr16:18995256-19075264:+,transmembrane_channel_like_7,SYT17->chr16:19179293-19279652:+,synaptotagmin_17	PATU8902_PANCREAS	0.26	0.31	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	CAV1--CAV2	2	0	CAV1	2905	chr7:116166743:+	CAV2	32473	chr7:116146025:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx&tcga_normals:1/3694=0.03%,PROTCLUST,LOCAL_REARRANGEMENT:+:[16244],CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+,CAV2->caveolin_2,chr7:115927434-116148595:+	PATU8902_PANCREAS	1	1	0.0206	TRUE	0	0	0	3	0	TRUE	ACH-000599
PATU8902_PANCREAS	LINC00338--PIP5K1C	2	0	LINC00338	4678	chr17:75089429:+	PIP5K1C	20720	chr19:3647384:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	LINC00338->chr17:75082798-75091068:+,PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma	PATU8902_PANCREAS	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	NCOA4--RP11-475I24.1	2	0	NCOA4	1189	chr10:51565296:+	RP11-475I24.1	18684	chr9:44345689:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	NCOA4->Oncogene{Bushman},chr10:51565108-51590734:+,nuclear_receptor_coactivator_4,RP11-475I24.1->chr9:44343366-44345689:-	PATU8902_PANCREAS	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	SP3--PSMD14	2	0	SP3	2942	chr2:174828489:-	PSMD14	23930	chr2:162223989:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	SP3->Sp3_transcription_factor,chr2:174771187-174830430:-,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	PATU8902_PANCREAS	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	WWOX--VAT1L	1	4	WWOX	23541	chr16:78466649:+	VAT1L	34273	chr16:77850818:+	ONLY_REF_SPLICE	NO	52	0	0.09	1	0.0103	0.0412	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	PATU8902_PANCREAS	0.09	1	0.0515	TRUE	0	0	0	1	0	TRUE	ACH-000599
BT483_BREAST	SMARCB1--MARK3	97	13	SMARCB1	8973	chr22:24167602:+	MARK3	31434	chr14:103941330:+	ONLY_REF_SPLICE	YES	73	44	0.6	0.71	0.9771	0.131	SMARCB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_b,_member_1,chr22:24129150-24176703:+,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	BT483_BREAST	0.6	0.71	1.1081	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	WDR90--MYL6	91	0	WDR90	13191	chr16:711501:+	MYL6	24172	chr12:56554027:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.9167	0	WDR90->WD_repeat_domain_90,chr16:699311-717833:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	BT483_BREAST	1	1	0.9167	TRUE	0	1	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	85	19	APOPT1	3684	chr14:104040507:+	IGH@	61983	chr14:106691977:-	ONLY_REF_SPLICE	YES	50	11	0.68	0.9	0.8563	0.1914	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.68	0.9	1.0477	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	27	23	APOPT1	3684	chr14:104040507:+	IGH@	26826	chr14:107114045:-	ONLY_REF_SPLICE	YES	50	0	0.5	1	0.272	0.2317	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.5	1	0.5037	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	27	23	APOPT1	3684	chr14:104040507:+	IGH@	20741	chr14:107199242:-	ONLY_REF_SPLICE	YES	50	0	0.5	1	0.272	0.2317	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.5	1	0.5037	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	26	23	APOPT1	3684	chr14:104040507:+	IGH@	17667	chr14:107218980:-	ONLY_REF_SPLICE	YES	50	0	0.49	1	0.2619	0.2317	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.49	1	0.4936	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	26	22	APOPT1	3684	chr14:104040507:+	IGH@	39121	chr14:106994118:-	ONLY_REF_SPLICE	YES	50	1	0.49	0.98	0.2619	0.2216	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.49	0.98	0.4835	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	26	20	APOPT1	3684	chr14:104040507:+	IGH@	46932	chr14:106866707:-	ONLY_REF_SPLICE	YES	50	1	0.48	0.98	0.2619	0.2015	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.48	0.98	0.4634	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	26	20	APOPT1	3684	chr14:104040507:+	IGH@	48396	chr14:106845627:-	ONLY_REF_SPLICE	YES	50	3	0.48	0.94	0.2619	0.2015	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.48	0.94	0.4634	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	22	23	APOPT1	3684	chr14:104040507:+	IGH@	25295	chr14:107131334:-	ONLY_REF_SPLICE	YES	50	0	0.47	1	0.2216	0.2317	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.47	1	0.4533	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	22	22	APOPT1	3684	chr14:104040507:+	IGH@	34558	chr14:107048973:-	ONLY_REF_SPLICE	YES	50	0	0.47	1	0.2216	0.2216	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.47	1	0.4432	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	18	23	APOPT1	3684	chr14:104040507:+	IGH@	19201	chr14:107211242:-	ONLY_REF_SPLICE	YES	50	0	0.45	1	0.1813	0.2317	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.45	1	0.413	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	SEPT5--AC008132.14	20	3	SEPT5	1328	chr22:19702314:+	AC008132.14	12895	chr22:18782304:-	INCL_NON_REF_SPLICE	YES	9	0	0.72	1	0.2015	0.0302	SEPT5->Oncogene{Bushman},chr22:19701987-19712295:+,septin_5,AC008132.14->chr22:18781927-18782317:-	BT483_BREAST	0.72	1	0.2317	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	DBP--AKT2	11	3	DBP	2859	chr19:49138837:-	AKT2	35773	chr19:40739858:-	ONLY_REF_SPLICE	YES	2	112	0.88	0.11	0.1108	0.0302	DBP->D-box_binding_PAR_bZIP_transcription_factor,chr19:49133287-49140695:-,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	BT483_BREAST	0.11	0.88	0.141	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	KSR2--VSIG10	3	1	KSR2	1908	chr12:118405881:-	VSIG10	58008	chr12:118511797:-	ONLY_REF_SPLICE	YES	2	32	0.67	0.11	0.0302	0.0101	LOCAL_REARRANGEMENT:-:[94610],KSR2->chr12:117890817-118406788:-,kinase_suppressor_of_ras_2,VSIG10->V-set_and_immunoglobulin_domain_containing_10,chr12:118501398-118573831:-	BT483_BREAST	0.11	0.67	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	SLC43A2--RTN4RL1	3	1	SLC43A2	5709	chr17:1516489:-	RTN4RL1	29961	chr17:1841102:-	ONLY_REF_SPLICE	YES	16	12	0.2	0.25	0.0302	0.0101	SLC43A2->chr17:1472561-1532180:-,solute_carrier_family_43_member_2,RTN4RL1->chr17:1837971-1928639:-,reticulon_4_receptor_like_1	BT483_BREAST	0.2	0.25	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	SRPK2--PUS7	2	2	SRPK2	2897	chr7:105029095:-	PUS7	40562	chr7:105112640:-	ONLY_REF_SPLICE	YES	76	21	0.05	0.16	0.0201	0.0201	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	BT483_BREAST	0.05	0.16	0.0402	TRUE	0	1	0	1	1	TRUE	ACH-000818
BT483_BREAST	AC105760.2--BPTF	2	0	AC105760.2	2662	chr2:237992799:-	BPTF	45205	chr17:65962688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	AC105760.2->chr2:237968077-237994460:-,BPTF->bromodomain_PHD_finger_transcription_factor,chr17:65821640-65980494:+	BT483_BREAST	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	CPD--NSRP1	2	0	CPD	22483	chr17:28783544:+	NSRP1	46341	chr17:28499560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CPD->carboxypeptidase_D,chr17:28705923-28797007:+,NSRP1->chr17:28442539-28513493:+,nuclear_speckle_splicing_regulatory_protein_1	BT483_BREAST	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000818
SHP77_LUNG	CLEC16A--RP11-368J21.3	239	143	CLEC16A	10752	chr16:11076848:+	RP11-368J21.3	46851	chr16:22572325:+	ONLY_REF_SPLICE	YES	34	0	0.92	1	2.7635	1.6535	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,RP11-368J21.3->chr16:22557019-22588186:+	SHP77_LUNG	0.92	1	4.417	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	FAM73A--COL4A1	34	12	FAM73A	6125	chr1:78272786:+	COL4A1	67532	chr13:110801775:-	INCL_NON_REF_SPLICE	YES	13	4	0.78	0.92	0.3931	0.1388	FAM73A->chr1:78245309-78344106:+,family_with_sequence_similarity_73_member_A,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SHP77_LUNG	0.78	0.92	0.5319	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	PPP6R3--ME2	34	1	PPP6R3	1110	chr11:68228295:+	ME2	40635	chr18:48422179:+	ONLY_REF_SPLICE	YES	18	58	0.66	0.38	0.3931	0.0116	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,ME2->chr18:48405419-48474691:+,malic_enzyme_2	SHP77_LUNG	0.38	0.66	0.4047	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	TXNRD1--ASCL1	19	0	TXNRD1	10019	chr12:104680887:+	ASCL1	36277	chr12:103353140:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2197	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,ASCL1->Oncogene{Bushman},achaete-scute_family_bHLH_transcription_factor_1,chr12:103351464-103354294:+	SHP77_LUNG	1	1	0.2197	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	AUTS2--TNRC18	15	2	AUTS2	2044	chr7:69064948:+	TNRC18	42678	chr7:5434226:-	ONLY_REF_SPLICE	YES	3	7	0.85	0.71	0.1734	0.0231	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18	SHP77_LUNG	0.71	0.85	0.1965	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	CLEC16A--RP11-368J21.3	1	46	CLEC16A	8584	chr16:11071256:+	RP11-368J21.3	46851	chr16:22572325:+	ONLY_REF_SPLICE	YES	164	0	0.22	1	0.0116	0.5319	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,RP11-368J21.3->chr16:22557019-22588186:+	SHP77_LUNG	0.22	1	0.5435	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	CTC-499J9.1--ASH1L	12	2	CTC-499J9.1	1076	chr5:110638190:-	ASH1L	19023	chr1:155385714:-	INCL_NON_REF_SPLICE	YES	4	38	0.78	0.27	0.1388	0.0231	CTC-499J9.1->chr5:110613215-110638265:-,ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-	SHP77_LUNG	0.27	0.78	0.1619	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	SYTL3--TULP4	11	0	SYTL3	2155	chr6:159072874:+	TULP4	26499	chr6:158834097:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1272	0	SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3,TULP4->chr6:158733692-158932860:+,tubby_like_protein_4	SHP77_LUNG	1	1	0.1272	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	CLEC16A--RP11-368J21.3	1	33	CLEC16A	10752	chr16:11076848:+	RP11-368J21.3	48007	chr16:22579384:+	ONLY_REF_SPLICE	YES	34	36	0.5	0.49	0.0116	0.3816	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,RP11-368J21.3->chr16:22557019-22588186:+	SHP77_LUNG	0.49	0.5	0.3932	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	JAKMIP3--LRRC27	8	4	JAKMIP3	1273	chr10:133918447:+	LRRC27	37748	chr10:134158002:+	ONLY_REF_SPLICE	YES	0	13	1	0.48	0.0925	0.0463	JAKMIP3->Janus_kinase_and_microtubule_interacting_protein_3,chr10:133918175-133998313:+,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	SHP77_LUNG	0.48	1	0.1388	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	RAB4B--CYP2T2P	7	8	RAB4B	7028	chr19:41292883:+	CYP2T2P	13653	chr19:41316400:-	ONLY_REF_SPLICE	YES	114	2	0.12	0.88	0.0809	0.0925	LOCAL_INVERSION:+:-:[11583],RAB4B->RAB4B,_member_RAS_oncogene_family,chr19:41284121-41302847:+,CYP2T2P->chr19:41314430-41317295:-	SHP77_LUNG	0.12	0.88	0.1734	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	SNX29--CIITA	7	3	SNX29	17158	chr16:12172772:+	CIITA	43524	chr16:10989139:+	ONLY_REF_SPLICE	YES	17	0	0.37	1	0.0809	0.0347	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator	SHP77_LUNG	0.37	1	0.1156	TRUE	0	1	0	1	1	TRUE	ACH-000790
SHP77_LUNG	C16orf45--RP11-429K17.1	7	2	C16orf45	1465	chr16:15528616:+	RP11-429K17.1	21515	chr16:20401930:+	ONLY_REF_SPLICE	YES	33	0	0.21	1	0.0809	0.0231	C16orf45->chr16:15528152-15718885:+,chromosome_16_open_reading_frame_45,RP11-429K17.1->chr16:20397279-20402486:+	SHP77_LUNG	0.21	1	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	SLC39A11--ITGA2B	5	3	SLC39A11	12214	chr17:70845773:-	ITGA2B	36058	chr17:42455158:-	ONLY_REF_SPLICE	YES	19	3	0.3	0.73	0.0578	0.0347	SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,ITGA2B->chr17:42449548-42466873:-,integrin_subunit_alpha_2b	SHP77_LUNG	0.3	0.73	0.0925	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	RRP36--RPL7L1	4	6	RRP36	7501	chr6:43001251:+	RPL7L1	13481	chr6:42849692:+	INCL_NON_REF_SPLICE	YES	16	223	0.38	0.04	0.0463	0.0694	RRP36->chr6:42989383-43001894:+,ribosomal_RNA_processing_36,RPL7L1->chr6:42847356-42857663:+,ribosomal_protein_L7_like_1	SHP77_LUNG	0.04	0.38	0.1157	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	B3GALNT2--LYST	5	1	B3GALNT2	10579	chr1:235628953:-	LYST	24244	chr1:235996967:-	ONLY_REF_SPLICE	YES	24	1	0.2	0.86	0.0578	0.0116	B3GALNT2->beta-1,3-N-acetylgalactosaminyltransferase_2,chr1:235613238-235667781:-,LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator	SHP77_LUNG	0.2	0.86	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	SIPA1L3--RP11-744N12.3	5	1	SIPA1L3	26589	chr19:38673380:+	RP11-744N12.3	45433	chr11:128499668:-	ONLY_REF_SPLICE	YES	107	0	0.05	1	0.0578	0.0116	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,RP11-744N12.3->chr11:128499548-128556817:-	SHP77_LUNG	0.05	1	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	CALCA--RPS28	5	0	CALCA	1049	chr11:14993852:-	RPS28	9980	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	CALCA->Oncogene{Bushman},calcitonin_related_polypeptide_alpha,chr11:14988214-14993900:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SHP77_LUNG	1	1	0.0578	TRUE	0	0	0	2	0	TRUE	ACH-000790
SHP77_LUNG	VWDE--PHF14	4	2	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	25	78	0.19	0.07	0.0463	0.0231	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SHP77_LUNG	0.07	0.19	0.0694	TRUE	0	6	0	17	2	TRUE	ACH-000790
SHP77_LUNG	CLEC16A--RP11-368J21.3	1	12	CLEC16A	7409	chr16:11066918:+	RP11-368J21.3	46851	chr16:22572325:+	ONLY_REF_SPLICE	YES	185	0	0.07	1	0.0116	0.1388	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,RP11-368J21.3->chr16:22557019-22588186:+	SHP77_LUNG	0.07	1	0.1504	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	SNX8--BRAT1	4	0	SNX8	3400	chr7:2353963:-	BRAT1	31805	chr7:2579522:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0463	0	SNX8->chr7:2291405-2393953:-,sorting_nexin_8,BRAT1->BRCA1_associated_ATM_activator_1,Oncogene{Bushman},chr7:2577511-2595361:-	SHP77_LUNG	1	1	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	RP11-307P5.1--SASH1	2	1	RP11-307P5.1	3288	chr6:148013623:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	NO	8	6	0.27	0.33	0.0231	0.0116	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SHP77_LUNG	0.27	0.33	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	ADNP2--ZNF200	2	0	ADNP2	3112	chr18:77875533:+	ZNF200	15507	chr16:3285360:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	HGNC_GENEFAM,ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,ZNF200->chr16:3272325-3286221:-,zinc_finger_protein_200	SHP77_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	C17orf76-AS1--PSMG3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PSMG3	14848	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	C17orf76-AS1->chr17:16342136-16381992:+,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	SHP77_LUNG	1	1	0.0231	TRUE	0	0	0	2	0	TRUE	ACH-000790
SHP77_LUNG	FBXW10--TRIM16L	2	0	FBXW10	1737	chr17:18648062:+	TRIM16L	31721	chr17:18638190:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PROTCLUST,LOCAL_REARRANGEMENT:+:[7895],FBXW10->F-box_and_WD_repeat_domain_containing_10,chr17:18647326-18682662:+,TRIM16L->chr17:18601311-18639431:+,tripartite_motif_containing_16-like	SHP77_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	GIGYF2--DIS3L2	2	0	GIGYF2	1094	chr2:233562102:+	DIS3L2	81895	chr2:233194523:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,DIS3L2->DIS3_like_3'-5'_exoribonuclease_2,chr2:232825955-233209060:+	SHP77_LUNG	1	1	0.0231	TRUE	0	1	0	1	1	TRUE	ACH-000790
SHP77_LUNG	MVB12B--PBX3	2	0	MVB12B	12149	chr9:129184227:+	PBX3	32882	chr9:128691934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	MVB12B->chr9:129089128-129269320:+,multivesicular_body_subunit_12B,PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3	SHP77_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	RRP36--RPL7L1	2	0	RRP36	3297	chr6:42993879:+	RPL7L1	14978	chr6:42851189:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RRP36->chr6:42989383-43001894:+,ribosomal_RNA_processing_36,RPL7L1->chr6:42847356-42857663:+,ribosomal_protein_L7_like_1	SHP77_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	SAMD3--TMEM200A	2	0	SAMD3	1306	chr6:130686265:-	TMEM200A	32603	chr6:130761552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},LOCAL_INVERSION:-:+:[309],SAMD3->chr6:130465460-130686570:-,sterile_alpha_motif_domain_containing_3,TMEM200A->chr6:130686879-130764208:+,transmembrane_protein_200A	SHP77_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	SLC39A11--ITGA2B	1	3	SLC39A11	12214	chr17:70845773:-	ITGA2B	35339	chr17:42455877:-	ONLY_REF_SPLICE	YES	19	1	0.17	0.8	0.0116	0.0347	SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,ITGA2B->chr17:42449548-42466873:-,integrin_subunit_alpha_2b	SHP77_LUNG	0.17	0.8	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	NAV1--PKP1	1	1	NAV1	4638	chr1:201618553:+	PKP1	49346	chr1:201263070:+	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.0116	0.0116	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,PKP1->chr1:201252580-201302121:+,plakophilin_1	SHP77_LUNG	0.08	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000790
SHP77_LUNG	TRPC1--STAG1	1	1	TRPC1	1658	chr3:142443573:+	STAG1	47205	chr3:136096594:-	ONLY_REF_SPLICE	YES	9	36	0.18	0.05	0.0116	0.0116	TRPC1->chr3:142442916-142526730:+,transient_receptor_potential_cation_channel_subfamily_C_member_1,STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1	SHP77_LUNG	0.05	0.18	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000790
OVISE_OVARY	RASA2--HSP90AB1	562	338	RASA2	4487	chr3:141248644:+	HSP90AB1	33430	chr6:44216367:+	ONLY_REF_SPLICE	YES	27	172	0.97	0.84	5.2119	3.1346	{Klijn_CCL:Ovary=1},RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1	OVISE_OVARY	0.84	0.97	8.3465	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	JUP--NT5C3B	112	69	JUP	5265	chr17:39927899:-	NT5C3B	29691	chr17:39983878:-	ONLY_REF_SPLICE	YES	1360	338	0.12	0.35	1.0387	0.6399	LOCAL_REARRANGEMENT:-:[38152],JUP->chr17:39775692-39943183:-,junction_plakoglobin,NT5C3B->5'-nucleotidase,_cytosolic_IIIB,chr17:39981335-39992523:-	OVISE_OVARY	0.12	0.35	1.6786	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	BRE--NSD1	105	71	BRE	5581	chr2:28152775:+	NSD1	56080	chr5:176718955:+	ONLY_REF_SPLICE	YES	433	133	0.29	0.57	0.9738	0.6584	BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1	OVISE_OVARY	0.29	0.57	1.6322	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	CCDC12--IQSEC1	104	40	CCDC12	6415	chr3:46982488:-	IQSEC1	20548	chr3:12983365:-	ONLY_REF_SPLICE	YES	282	5	0.34	0.97	0.9645	0.371	{Klijn_CCL:Ovary=1},CCDC12->chr3:46963216-47023500:-,coiled-coil_domain_containing_12,IQSEC1->IQ_motif_and_Sec7_domain_1,chr3:12938719-13114617:-	OVISE_OVARY	0.34	0.97	1.3355	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	PRRG2--CCDC155	95	56	PRRG2	3582	chr19:50087209:+	CCDC155	15450	chr19:49897733:+	ONLY_REF_SPLICE	YES	24	13	0.86	0.92	0.881	0.5193	{Klijn_CCL:Ovary=1},PRRG2->chr19:50083903-50094272:+,proline_rich_and_Gla_domain_2,CCDC155->chr19:49891475-49921251:+,coiled-coil_domain_containing_155	OVISE_OVARY	0.86	0.92	1.4003	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	GCLM--ARHGAP29	74	48	GCLM	4154	chr1:94367141:-	ARHGAP29	46055	chr1:94620204:-	ONLY_REF_SPLICE	YES	98	1	0.55	0.99	0.6863	0.4451	GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	OVISE_OVARY	0.55	0.99	1.1314	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	PKN1--ASH1L	67	54	PKN1	12706	chr19:14574965:+	ASH1L	35463	chr1:155349907:-	ONLY_REF_SPLICE	YES	399	51	0.23	0.7	0.6214	0.5008	{Klijn_CCL:Ovary=1},PKN1->chr19:14543865-14582679:+,protein_kinase_N1,ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-	OVISE_OVARY	0.23	0.7	1.1222	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	ZC3H7B--L3MBTL2	55	54	ZC3H7B	20901	chr22:41745305:+	L3MBTL2	35086	chr22:41609897:+	ONLY_REF_SPLICE	YES	181	46	0.38	0.7	0.5101	0.5008	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:+:[70251],ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+	OVISE_OVARY	0.38	0.7	1.0109	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	CYB561--hsa-mir-6080	53	0	CYB561	1134	chr17:61523606:-	hsa-mir-6080	18144	chr17:62760666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4915	0	CYB561->chr17:61509665-61523739:-,cytochrome_b561,hsa-mir-6080->chr17:62745781-62778117:-	OVISE_OVARY	1	1	0.4915	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	RP3-510D11.1--PTBP1	36	9	RP3-510D11.1	3450	chr1:9242066:-	PTBP1	9820	chr19:803561:+	ONLY_REF_SPLICE	YES	0	219	1	0.17	0.3339	0.0835	RP3-510D11.1->chr1:9242066-9262678:-,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	OVISE_OVARY	0.17	1	0.4174	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	GCLM--ARHGAP29	23	26	GCLM	4154	chr1:94367141:-	ARHGAP29	47153	chr1:94616071:-	ONLY_REF_SPLICE	YES	98	4	0.33	0.92	0.2133	0.2411	GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	OVISE_OVARY	0.33	0.92	0.4544	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	NUMA1--RP11-807H22.7	22	21	NUMA1	17194	chr11:71740251:-	RP11-807H22.7	44213	chr11:71874423:-	ONLY_REF_SPLICE	YES	114	0	0.27	1	0.204	0.1948	LOCAL_REARRANGEMENT:-:[82627],NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,RP11-807H22.7->chr11:71874366-71920285:-	OVISE_OVARY	0.27	1	0.3988	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	SEMA5B--ZBTB38	18	33	SEMA5B	7191	chr3:122679987:-	ZBTB38	42564	chr3:141122769:+	ONLY_REF_SPLICE	YES	20	120	0.72	0.3	0.1669	0.306	SEMA5B->Oncogene{Bushman},chr3:122628041-122747452:-,semaphorin_5B,ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38	OVISE_OVARY	0.3	0.72	0.4729	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	PPFIA1--ANO1	21	10	PPFIA1	26844	chr11:70202360:+	ANO1	60251	chr11:69995816:+	ONLY_REF_SPLICE	YES	90	6	0.26	0.84	0.1948	0.0927	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	OVISE_OVARY	0.26	0.84	0.2875	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	ATG7--SLC9A9	18	19	ATG7	20857	chr3:11389509:+	SLC9A9	42288	chr3:143515745:-	ONLY_REF_SPLICE	YES	42	0	0.47	1	0.1669	0.1762	{Klijn_CCL:Ovary=1},ATG7->autophagy_related_7,chr3:11313995-11599139:+,SLC9A9->Oncogene{Bushman},chr3:142984064-143567373:-,solute_carrier_family_9_member_A9	OVISE_OVARY	0.47	1	0.3431	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	PARD3--KDM3A	20	7	PARD3	2552	chr10:34985246:-	KDM3A	38592	chr2:86669141:+	ONLY_REF_SPLICE	YES	112	19	0.19	0.59	0.1855	0.0649	{Klijn_CCL:Ovary=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,KDM3A->Oncogene{Bushman},chr2:86667770-86719839:+,lysine_demethylase_3A	OVISE_OVARY	0.19	0.59	0.2504	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	RFX3--GLIS3	15	12	RFX3	1258	chr9:3525747:-	GLIS3	55541	chr9:3937189:-	ONLY_REF_SPLICE	YES	4	59	0.87	0.31	0.1391	0.1113	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-	OVISE_OVARY	0.31	0.87	0.2504	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	PKN1--ASH1L	5	50	PKN1	12706	chr19:14574965:+	ASH1L	35468	chr1:155349902:-	INCL_NON_REF_SPLICE	YES	399	51	0.12	0.52	0.0464	0.4637	{Klijn_CCL:Ovary=1},PKN1->chr19:14543865-14582679:+,protein_kinase_N1,ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-	OVISE_OVARY	0.12	0.52	0.5101	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	DIAPH3--GPA33	12	9	DIAPH3	27660	chr13:60384922:-	GPA33	40220	chr1:167042776:-	ONLY_REF_SPLICE	YES	38	1	0.36	0.95	0.1113	0.0835	{Klijn_CCL:Ovary=1},DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3,GPA33->Oncogene{Bushman},chr1:167022073-167059868:-,glycoprotein_A33	OVISE_OVARY	0.36	0.95	0.1948	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	FBXO34--RALGAPA1	11	10	FBXO34	8932	chr14:55821940:+	RALGAPA1	69128	chr14:36008896:-	ONLY_REF_SPLICE	YES	0	39	1	0.35	0.102	0.0927	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,RALGAPA1->Ral_GTPase_activating_protein_catalytic_alpha_subunit_1,chr14:36007558-36278510:-	OVISE_OVARY	0.35	1	0.1947	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	RHOG--DLGAP3	12	0	RHOG	1090	chr11:3862124:-	DLGAP3	11090	chr1:35373038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1113	0	RHOG->Oncogene{Bushman},chr11:3848208-3862213:-,ras_homolog_family_member_G,DLGAP3->chr1:35331037-35395186:-,discs_large_homolog_associated_protein_3	OVISE_OVARY	1	1	0.1113	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	CYB561--hsa-mir-6080	9	3	CYB561	1481	chr17:61523259:-	hsa-mir-6080	18144	chr17:62760666:-	ONLY_REF_SPLICE	YES	70	1	0.15	0.92	0.0835	0.0278	CYB561->chr17:61509665-61523739:-,cytochrome_b561,hsa-mir-6080->chr17:62745781-62778117:-	OVISE_OVARY	0.15	0.92	0.1113	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	JAG2--BRF1	8	4	JAG2	12679	chr14:105611267:-	BRF1	56583	chr14:105678501:-	ONLY_REF_SPLICE	YES	16	83	0.43	0.13	0.0742	0.0371	LOCAL_REARRANGEMENT:-:[40462],JAG2->Oncogene{Bushman},chr14:105607318-105635161:-,jagged_2,BRF1->BRF1,_RNA_polymerase_III_transcription_initiation_factor_90_kDa_subunit,chr14:105675623-105781926:-	OVISE_OVARY	0.13	0.43	0.1113	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	ZC3H7B--YPEL2	5	15	ZC3H7B	1251	chr22:41697776:+	YPEL2	32943	chr17:57430576:+	ONLY_REF_SPLICE	YES	186	63	0.1	0.24	0.0464	0.1391	ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,YPEL2->chr17:57409050-57479090:+,yippee_like_2	OVISE_OVARY	0.1	0.24	0.1855	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	PPFIA1--ANO1	7	5	PPFIA1	26401	chr11:70201917:+	ANO1	60251	chr11:69995816:+	ONLY_REF_SPLICE	YES	64	6	0.16	0.67	0.0649	0.0464	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	OVISE_OVARY	0.16	0.67	0.1113	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	NUMA1--RP11-807H22.7	1	24	NUMA1	17194	chr11:71740251:-	RP11-807H22.7	42989	chr11:71909780:-	ONLY_REF_SPLICE	YES	114	0	0.18	1	0.0093	0.2226	LOCAL_REARRANGEMENT:-:[82627],NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,RP11-807H22.7->chr11:71874366-71920285:-	OVISE_OVARY	0.18	1	0.2319	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	CYB561--hsa-mir-6080	6	0	CYB561	1134	chr17:61523606:-	hsa-mir-6080	19242	chr17:62758828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0556	0	CYB561->chr17:61509665-61523739:-,cytochrome_b561,hsa-mir-6080->chr17:62745781-62778117:-	OVISE_OVARY	1	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	RCC1--CTD-2354A18.1	6	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0556	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	OVISE_OVARY	1	1	0.0556	TRUE	0	1	0	7	0	TRUE	ACH-000527
OVISE_OVARY	ZC3H7B--L3MBTL2	1	19	ZC3H7B	20901	chr22:41745305:+	L3MBTL2	36220	chr22:41612143:+	ONLY_REF_SPLICE	NO	181	63	0.1	0.24	0.0093	0.1762	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:+:[70251],ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+	OVISE_OVARY	0.1	0.24	0.1855	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	CYB561--hsa-mir-6080	4	2	CYB561	1481	chr17:61523259:-	hsa-mir-6080	19242	chr17:62758828:-	ONLY_REF_SPLICE	YES	70	36	0.08	0.14	0.0371	0.0185	CYB561->chr17:61509665-61523739:-,cytochrome_b561,hsa-mir-6080->chr17:62745781-62778117:-	OVISE_OVARY	0.08	0.14	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	GCLM--ARHGAP29	2	9	GCLM	2812	chr1:94370079:-	ARHGAP29	47153	chr1:94616071:-	ONLY_REF_SPLICE	YES	45	4	0.2	0.73	0.0185	0.0835	GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	OVISE_OVARY	0.2	0.73	0.102	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	LIPE-AS1--KDM2A	4	0	LIPE-AS1	1097	chr19:42901376:+	KDM2A	25250	chr11:66974981:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	LIPE-AS1->LIPE_antisense_RNA_1,chr19:42901280-43156507:+,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	OVISE_OVARY	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	PCDP1--STEAP3	4	0	PCDP1	33376	chr2:120409645:+	STEAP3	45800	chr2:120003065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	PCDP1->chr2:120302008-120419827:+,STEAP3->STEAP3_metalloreductase,chr2:119981384-120023228:+	OVISE_OVARY	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	RP3-510D11.1--PTBP1	4	0	RP3-510D11.1	3450	chr1:9242066:-	PTBP1	14619	chr19:808360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	RP3-510D11.1->chr1:9242066-9262678:-,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	OVISE_OVARY	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	CDK17--C12orf55	2	6	CDK17	1575	chr12:96793764:-	C12orf55	28219	chr12:96894612:+	ONLY_REF_SPLICE	YES	63	1	0.11	0.89	0.0185	0.0556	LOCAL_INVERSION:-:+:[89011],CDK17->chr12:96672039-96794338:-,cyclin-dependent_kinase_17,C12orf55->chr12:96883349-97269333:+	OVISE_OVARY	0.11	0.89	0.0741	TRUE	0	0	0	2	0	TRUE	ACH-000527
OVISE_OVARY	ANP32B--APP	3	0	ANP32B	8117	chr9:100773588:+	APP	24361	chr21:27394320:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	OVISE_OVARY	1	1	0.0278	TRUE	0	0	0	7	0	TRUE	ACH-000527
OVISE_OVARY	CYB561--hsa-mir-6080	3	0	CYB561	1125	chr17:61523615:-	hsa-mir-6080	18144	chr17:62760666:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	CYB561->chr17:61509665-61523739:-,cytochrome_b561,hsa-mir-6080->chr17:62745781-62778117:-	OVISE_OVARY	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	SOD2--RPL22	3	0	SOD2	15023	chr6:160103516:-	RPL22	37383	chr1:6257807:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	SOD2->chr6:160090089-160183561:-,superoxide_dismutase_2,_mitochondrial,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	OVISE_OVARY	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	ATG7--SLC9A9	1	6	ATG7	18658	chr3:11383753:+	SLC9A9	42288	chr3:143515745:-	ONLY_REF_SPLICE	NO	50	0	0.12	1	0.0093	0.0556	{Klijn_CCL:Ovary=1},ATG7->autophagy_related_7,chr3:11313995-11599139:+,SLC9A9->Oncogene{Bushman},chr3:142984064-143567373:-,solute_carrier_family_9_member_A9	OVISE_OVARY	0.12	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	PRRG2--CCDC155	1	5	PRRG2	1836	chr19:50084738:+	CCDC155	15450	chr19:49897733:+	ONLY_REF_SPLICE	NO	147	13	0.04	0.32	0.0093	0.0464	{Klijn_CCL:Ovary=1},PRRG2->chr19:50083903-50094272:+,proline_rich_and_Gla_domain_2,CCDC155->chr19:49891475-49921251:+,coiled-coil_domain_containing_155	OVISE_OVARY	0.04	0.32	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	CPSF6--TFG	2	0	CPSF6	1170	chr12:69633486:+	TFG	30723	chr3:100463677:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+	OVISE_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	FBXO34--RALGAPA1	1	4	FBXO34	8295	chr14:55821303:+	RALGAPA1	69128	chr14:36008896:-	ONLY_REF_SPLICE	YES	2	39	0.71	0.11	0.0093	0.0371	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,RALGAPA1->Ral_GTPase_activating_protein_catalytic_alpha_subunit_1,chr14:36007558-36278510:-	OVISE_OVARY	0.11	0.71	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	FUT8--HIF1A	2	0	FUT8	12030	chr14:66028484:+	HIF1A	32603	chr14:62187100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	OVISE_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	LHFPL2--ARHGEF28	2	0	LHFPL2	7033	chr5:77928087:-	ARHGEF28	33056	chr5:73090227:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+	OVISE_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MTFR1--ARMC1	2	0	MTFR1	1051	chr8:66557019:+	ARMC1	26375	chr8:66525668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	LOCAL_INVERSION:+:-:[10527],MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,ARMC1->armadillo_repeat_containing_1,chr8:66514694-66546442:-	OVISE_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000527
HCC1419_BREAST	PLEC--NDUFAF6	590	510	PLEC	19135	chr8:145007365:-	NDUFAF6	61242	chr8:96059222:+	ONLY_REF_SPLICE	YES	249	1384	0.82	0.44	6.7779	5.8589	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.44	0.82	12.6368	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CCNE2--RMDN1	355	367	CCNE2	5802	chr8:95902643:-	RMDN1	30267	chr8:87487182:-	ONLY_REF_SPLICE	YES	292	188	0.71	0.79	4.0782	4.2161	CCNE2->chr8:95891998-95908906:-,cyclin_E2,RMDN1->chr8:87480486-87526586:-,regulator_of_microtubule_dynamics_1	HCC1419_BREAST	0.71	0.79	8.2943	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	STARD3--TAC4	324	35	STARD3	1167	chr17:37793484:+	TAC4	16479	chr17:47921519:-	ONLY_REF_SPLICE	YES	426	0	0.46	1	3.7221	0.4021	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,TAC4->chr17:47915671-47925379:-,tachykinin_4_(hemokinin)	HCC1419_BREAST	0.46	1	4.1242	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	VPS18--ZFYVE19	234	250	VPS18	3913	chr15:41191196:+	ZFYVE19	16279	chr15:41104897:+	ONLY_REF_SPLICE	YES	44	99	0.92	0.83	2.6882	2.872	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[79861],VPS18->VPS18,_CORVET/HOPS_core_subunit,chr15:41186628-41196173:+,ZFYVE19->chr15:41099284-41106767:+,zinc_finger_FYVE-type_containing_19	HCC1419_BREAST	0.83	0.92	5.5602	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	PLEC--NDUFAF6	87	534	PLEC	19167	chr8:145007333:-	NDUFAF6	61242	chr8:96059222:+	INCL_NON_REF_SPLICE	YES	295	1384	0.68	0.31	0.9995	6.1346	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.31	0.68	7.1341	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	PLEC--NDUFAF6	3	510	PLEC	19135	chr8:145007365:-	NDUFAF6	61217	chr8:96059197:+	INCL_NON_REF_SPLICE	YES	249	1475	0.67	0.26	0.0345	5.8589	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.26	0.67	5.8934	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	VPS18--ZFYVE19	94	115	VPS18	3913	chr15:41191196:+	ZFYVE19	16918	chr15:41105536:+	ONLY_REF_SPLICE	YES	44	193	0.83	0.52	1.0799	1.3211	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[79861],VPS18->VPS18,_CORVET/HOPS_core_subunit,chr15:41186628-41196173:+,ZFYVE19->chr15:41099284-41106767:+,zinc_finger_FYVE-type_containing_19	HCC1419_BREAST	0.52	0.83	2.401	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	PLEC--NDUFAF6	4	464	PLEC	19131	chr8:145007369:-	NDUFAF6	61242	chr8:96059222:+	INCL_NON_REF_SPLICE	YES	240	1384	0.66	0.25	0.046	5.3304	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.25	0.66	5.3764	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SYT7--CYB5R2	103	8	SYT7	1359	chr11:61348262:-	CYB5R2	21954	chr11:7695724:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.1833	0.0919	SYT7->chr11:61282785-61348620:-,synaptotagmin_7,CYB5R2->chr11:7686331-7698453:-,cytochrome_b5_reductase_2	HCC1419_BREAST	1	1	1.2752	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	RNFT1--SARM1	79	50	RNFT1	4321	chr17:58037327:-	SARM1	27366	chr17:26726589:+	INCL_NON_REF_SPLICE	YES	69	7	0.65	0.95	0.9076	0.5744	RNFT1->chr17:58029601-58042122:-,ring_finger_protein,_transmembrane_1,SARM1->chr17:26691378-26728065:+,sterile_alpha_and_TIR_motif_containing_1	HCC1419_BREAST	0.65	0.95	1.482	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ZNF251--TSHZ2	75	50	ZNF251	3735	chr8:145979068:-	TSHZ2	17828	chr20:52103683:+	ONLY_REF_SPLICE	YES	396	0	0.24	1	0.8616	0.5744	HGNC_GENEFAM,ZNF251->chr8:145946298-145981802:-,zinc_finger_protein_251,TSHZ2->chr20:51588946-52111869:+,teashirt_zinc_finger_homeobox_2	HCC1419_BREAST	0.24	1	1.436	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CCNE2--RMDN1	26	238	CCNE2	5802	chr8:95902643:-	RMDN1	30306	chr8:87487143:-	ONLY_REF_SPLICE	YES	292	176	0.47	0.6	0.2987	2.7341	CCNE2->chr8:95891998-95908906:-,cyclin_E2,RMDN1->chr8:87480486-87526586:-,regulator_of_microtubule_dynamics_1	HCC1419_BREAST	0.47	0.6	3.0328	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	VAV2--TRUB2	62	75	VAV2	2729	chr9:136804225:-	TRUB2	44111	chr9:131076168:-	ONLY_REF_SPLICE	YES	149	201	0.48	0.41	0.7123	0.8616	{Klijn_CCL:Breast=1},VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,TRUB2->TruB_pseudouridine_synthase_family_member_2,chr9:131071382-131085021:-	HCC1419_BREAST	0.41	0.48	1.5739	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	PLEC--NDUFAF6	36	157	PLEC	19135	chr8:145007365:-	NDUFAF6	62376	chr8:96060685:+	ONLY_REF_SPLICE	YES	249	1141	0.44	0.14	0.4136	1.8036	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.14	0.44	2.2172	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SLCO4A1--TCEA2	60	28	SLCO4A1	4092	chr20:61290119:+	TCEA2	20634	chr20:62693783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6893	0.3217	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2	HCC1419_BREAST	1	1	1.011	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	PLEC--NDUFAF6	6	166	PLEC	18334	chr8:145008166:-	NDUFAF6	61242	chr8:96059222:+	ONLY_REF_SPLICE	YES	581	1384	0.23	0.11	0.0689	1.907	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.11	0.23	1.9759	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	STMN3--OSBPL2	46	4	STMN3	1101	chr20:62284680:-	OSBPL2	23698	chr20:60864263:+	ONLY_REF_SPLICE	YES	1	237	0.98	0.17	0.5284	0.046	STMN3->chr20:62271061-62284780:-,stathmin_3,OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2	HCC1419_BREAST	0.17	0.98	0.5744	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	PLEC--NDUFAF6	3	164	PLEC	19167	chr8:145007333:-	NDUFAF6	62376	chr8:96060685:+	INCL_NON_REF_SPLICE	YES	295	1141	0.36	0.13	0.0345	1.884	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.13	0.36	1.9185	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	LRCH1--NADSYN1	32	16	LRCH1	1536	chr13:47127838:+	NADSYN1	32492	chr11:71166156:+	ONLY_REF_SPLICE	YES	6	150	0.89	0.24	0.3676	0.1838	{Klijn_CCL:Breast=1},LRCH1->chr13:47127303-47327175:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_1,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	HCC1419_BREAST	0.24	0.89	0.5514	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ZFAND1--PVT1	30	18	ZFAND1	1705	chr8:82644434:-	PVT1	27090	chr8:129001408:+	ONLY_REF_SPLICE	YES	307	27	0.14	0.64	0.3446	0.2068	ZFAND1->chr8:82613569-82645138:-,zinc_finger_AN1-type_containing_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HCC1419_BREAST	0.14	0.64	0.5514	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	NDUFAF6--NCOR1	28	17	NDUFAF6	27487	chr8:96087980:+	NCOR1	70058	chr17:15979016:-	ONLY_REF_SPLICE	YES	21	102	0.68	0.31	0.3217	0.1953	NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+,NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1	HCC1419_BREAST	0.31	0.68	0.517	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CCNE2--RMDN1	1	122	CCNE2	4666	chr8:95905046:-	RMDN1	30306	chr8:87487143:-	ONLY_REF_SPLICE	NO	583	176	0.17	0.41	0.0115	1.4015	CCNE2->chr8:95891998-95908906:-,cyclin_E2,RMDN1->chr8:87480486-87526586:-,regulator_of_microtubule_dynamics_1	HCC1419_BREAST	0.17	0.41	1.413	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ZNF79--RALGPS1	22	22	ZNF79	2791	chr9:130191199:+	RALGPS1	18228	chr9:129796710:+	ONLY_REF_SPLICE	YES	19	9	0.7	0.83	0.2527	0.2527	{Klijn_CCL:Breast=1},ZNF79->chr9:130186661-130207651:+,zinc_finger_protein_79,RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+	HCC1419_BREAST	0.7	0.83	0.5054	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	RAE1--AC084125.4	23	16	RAE1	5954	chr20:55940498:+	AC084125.4	19730	chr8:145662134:+	ONLY_REF_SPLICE	YES	1003	4	0.04	0.91	0.2642	0.1838	RAE1->chr20:55926066-55954267:+,ribonucleic_acid_export_1,AC084125.4->chr8:145660602-145665354:+	HCC1419_BREAST	0.04	0.91	0.448	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	LDLRAD3--SYT9	25	1	LDLRAD3	1164	chr11:35965694:+	SYT9	20097	chr11:7324270:+	ONLY_REF_SPLICE	YES	1	6	0.96	0.81	0.2872	0.0115	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,SYT9->chr11:7260009-7490273:+,synaptotagmin_9	HCC1419_BREAST	0.81	0.96	0.2987	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CHD6--CA3	21	12	CHD6	14246	chr20:40120338:-	CA3	53150	chr8:86295183:+	ONLY_REF_SPLICE	YES	88	0	0.27	1	0.2412	0.1379	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,CA3->carbonic_anhydrase_3,chr8:86285665-86361269:+	HCC1419_BREAST	0.27	1	0.3791	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CHD6--SKAP1	20	16	CHD6	32824	chr20:40065914:-	SKAP1	53318	chr17:46474147:-	ONLY_REF_SPLICE	YES	133	0	0.21	1	0.2298	0.1838	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,SKAP1->chr17:46210802-46507637:-,src_kinase_associated_phosphoprotein_1	HCC1419_BREAST	0.21	1	0.4136	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CCNE2--RMDN1	4	78	CCNE2	5802	chr8:95902643:-	RMDN1	30862	chr8:87486587:-	ONLY_REF_SPLICE	YES	292	204	0.22	0.29	0.046	0.8961	CCNE2->chr8:95891998-95908906:-,cyclin_E2,RMDN1->chr8:87480486-87526586:-,regulator_of_microtubule_dynamics_1	HCC1419_BREAST	0.22	0.29	0.9421	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	VAV2--TRUB2	1	77	VAV2	2729	chr9:136804225:-	TRUB2	43049	chr9:131077907:-	ONLY_REF_SPLICE	YES	149	204	0.34	0.28	0.0115	0.8846	{Klijn_CCL:Breast=1},VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,TRUB2->TruB_pseudouridine_synthase_family_member_2,chr9:131071382-131085021:-	HCC1419_BREAST	0.28	0.34	0.8961	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	HMGXB4--CTA-714B7.7	15	16	HMGXB4	6887	chr22:35661596:+	CTA-714B7.7	18197	chr22:35518654:+	ONLY_REF_SPLICE	YES	74	0	0.3	1	0.1723	0.1838	HMGXB4->HMG-box_containing_4,chr22:35653445-35691800:+,CTA-714B7.7->chr22:35518654-35523412:+	HCC1419_BREAST	0.3	1	0.3561	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	RP11-512M8.5--CLIP1	17	8	RP11-512M8.5	2745	chr12:122748119:-	CLIP1	55882	chr12:122758709:-	ONLY_REF_SPLICE	YES	70	199	0.26	0.11	0.1953	0.0919	GTEx_FI:{Brain=[count:3=pct:0.5],Esophagus=[count:2=pct:0.5],Nerve=[count:1=pct:0.6]},LOCAL_REARRANGEMENT:-:[5009],RP11-512M8.5->chr12:122692326-122750970:-,CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-	HCC1419_BREAST	0.11	0.26	0.2872	TRUE	1	10	0	1	7	TRUE	ACH-000277
HCC1419_BREAST	BIRC6--REXO1L1	14	17	BIRC6	65151	chr2:32756618:+	REXO1L1	88770	chr8:86573041:-	INCL_NON_REF_SPLICE	YES	164	5	0.16	0.86	0.1608	0.1953	BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,REXO1L1->chr8:86568695-86575726:-	HCC1419_BREAST	0.16	0.86	0.3561	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ZNF79--RALGPS1	11	24	ZNF79	2791	chr9:130191199:+	RALGPS1	16926	chr9:129778939:+	ONLY_REF_SPLICE	YES	19	9	0.65	0.8	0.1264	0.2757	{Klijn_CCL:Breast=1},ZNF79->chr9:130186661-130207651:+,zinc_finger_protein_79,RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+	HCC1419_BREAST	0.65	0.8	0.4021	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ZHX1--RP11-398G24.2	15	5	ZHX1	3911	chr8:124279513:-	RP11-398G24.2	15604	chr8:123139385:-	INCL_NON_REF_SPLICE	YES	504	0	0.04	1	0.1723	0.0574	ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,RP11-398G24.2->chr8:122966879-123139423:-	HCC1419_BREAST	0.04	1	0.2297	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	TONSL--STMN3	12	13	TONSL	1563	chr8:145669265:-	STMN3	22217	chr20:62273652:-	ONLY_REF_SPLICE	YES	237	20	0.1	0.56	0.1379	0.1493	{Klijn_CCL:Breast=1},TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein,STMN3->chr20:62271061-62284780:-,stathmin_3	HCC1419_BREAST	0.1	0.56	0.2872	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ZFAND1--PVT1	9	24	ZFAND1	1705	chr8:82644434:-	PVT1	25789	chr8:128996150:+	ONLY_REF_SPLICE	YES	307	32	0.1	0.51	0.1034	0.2757	ZFAND1->chr8:82613569-82645138:-,zinc_finger_AN1-type_containing_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HCC1419_BREAST	0.1	0.51	0.3791	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SLCO4A1--RP13-152O15.5	13	4	SLCO4A1	4092	chr20:61290119:+	RP13-152O15.5	18227	chr20:62688325:+	ONLY_REF_SPLICE	YES	0	2	1	0.89	0.1493	0.046	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,RP13-152O15.5->chr20:62688156-62688437:+	HCC1419_BREAST	0.89	1	0.1953	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CEP170B--ABHD12B	11	9	CEP170B	2366	chr14:105334892:+	ABHD12B	22622	chr14:51344670:+	ONLY_REF_SPLICE	YES	57	0	0.26	1	0.1264	0.1034	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,ABHD12B->abhydrolase_domain_containing_12B,chr14:51338878-51371688:+	HCC1419_BREAST	0.26	1	0.2298	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	EXT1--UGT8	11	3	EXT1	2769	chr8:119122324:-	UGT8	26461	chr4:115544035:+	ONLY_REF_SPLICE	YES	55	0	0.2	1	0.1264	0.0345	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,UGT8->UDP_glycosyltransferase_8,chr4:115519611-115599380:+	HCC1419_BREAST	0.2	1	0.1609	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	RP11-660L16.2--LRCH1	9	8	RP11-660L16.2	1212	chr11:71159931:+	LRCH1	7217	chr13:47224336:+	ONLY_REF_SPLICE	YES	17	6	0.5	0.74	0.1034	0.0919	RP11-660L16.2->chr11:71159720-71163203:+,LRCH1->chr13:47127303-47327175:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_1	HCC1419_BREAST	0.5	0.74	0.1953	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CHD6--CA3	6	5	CHD6	14246	chr20:40120338:-	CA3	55317	chr8:86351941:+	ONLY_REF_SPLICE	YES	88	5	0.11	0.69	0.0689	0.0574	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,CA3->carbonic_anhydrase_3,chr8:86285665-86361269:+	HCC1419_BREAST	0.11	0.69	0.1263	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SYS1--HOXB9	6	5	SYS1	4225	chr20:43994326:+	HOXB9	15979	chr17:46700497:-	ONLY_REF_SPLICE	YES	283	0	0.04	1	0.0689	0.0574	SYS1->Sys1_golgi_trafficking_protein,chr20:43990577-44005438:+,HOXB9->chr17:46698518-46703839:-,homeobox_B9	HCC1419_BREAST	0.04	1	0.1263	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	TONSL--STMN3	4	11	TONSL	1265	chr8:145669563:-	STMN3	22217	chr20:62273652:-	ONLY_REF_SPLICE	YES	374	20	0.04	0.43	0.046	0.1264	{Klijn_CCL:Breast=1},TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein,STMN3->chr20:62271061-62284780:-,stathmin_3	HCC1419_BREAST	0.04	0.43	0.1724	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	C2orf82--EIF4E2	6	2	C2orf82	5607	chr2:233741157:+	EIF4E2	14069	chr2:233421126:+	INCL_NON_REF_SPLICE	YES	0	18	1	0.31	0.0689	0.023	C2orf82->chr2:233721980-233743418:+,chromosome_2_open_reading_frame_82,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	HCC1419_BREAST	0.31	1	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CEP170B--ABHD12B	6	1	CEP170B	1234	chr14:105331850:+	ABHD12B	22622	chr14:51344670:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0689	0.0115	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,ABHD12B->abhydrolase_domain_containing_12B,chr14:51338878-51371688:+	HCC1419_BREAST	0.78	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SYT7--CYB5R2	6	1	SYT7	1359	chr11:61348262:-	CYB5R2	22105	chr11:7695573:-	INCL_NON_REF_SPLICE	YES	0	15	1	0.32	0.0689	0.0115	SYT7->chr11:61282785-61348620:-,synaptotagmin_7,CYB5R2->chr11:7686331-7698453:-,cytochrome_b5_reductase_2	HCC1419_BREAST	0.32	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CEP170B--ABHD12B	5	1	CEP170B	1234	chr14:105331850:+	ABHD12B	24518	chr14:51347170:+	ONLY_REF_SPLICE	YES	2	10	0.75	0.38	0.0574	0.0115	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,ABHD12B->abhydrolase_domain_containing_12B,chr14:51338878-51371688:+	HCC1419_BREAST	0.38	0.75	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	HMGXB4--CTA-714B7.7	3	9	HMGXB4	6887	chr22:35661596:+	CTA-714B7.7	19283	chr22:35523135:+	ONLY_REF_SPLICE	YES	74	0	0.14	1	0.0345	0.1034	HMGXB4->HMG-box_containing_4,chr22:35653445-35691800:+,CTA-714B7.7->chr22:35518654-35523412:+	HCC1419_BREAST	0.14	1	0.1379	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	TRAF3--ZNF839	5	1	TRAF3	1200	chr14:103244012:+	ZNF839	30942	chr14:102797959:+	ONLY_REF_SPLICE	YES	0	39	1	0.13	0.0574	0.0115	TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+,ZNF839->chr14:102783714-102809044:+,zinc_finger_protein_839	HCC1419_BREAST	0.13	1	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ZFAND1--PVT1	4	5	ZFAND1	1151	chr8:82644988:-	PVT1	25789	chr8:128996150:+	ONLY_REF_SPLICE	YES	63	32	0.12	0.22	0.046	0.0574	ZFAND1->chr8:82613569-82645138:-,zinc_finger_AN1-type_containing_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HCC1419_BREAST	0.12	0.22	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	IFT43--SERPINA4	3	8	IFT43	3738	chr14:76455320:+	SERPINA4	17662	chr14:95029803:+	ONLY_REF_SPLICE	YES	168	0	0.06	1	0.0345	0.0919	IFT43->chr14:76368479-76550928:+,intraflagellar_transport_43,SERPINA4->chr14:95027428-95036250:+,serpin_family_A_member_4	HCC1419_BREAST	0.06	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	EXT1--COL14A1	3	6	EXT1	4971	chr8:118847683:-	COL14A1	28824	chr8:121160045:+	ONLY_REF_SPLICE	YES	51	0	0.15	1	0.0345	0.0689	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	HCC1419_BREAST	0.15	1	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	TTC6--MIPOL1	4	2	TTC6	1162	chr14:38065213:+	MIPOL1	61096	chr14:37716308:+	ONLY_REF_SPLICE	YES	5	26	0.55	0.19	0.046	0.023	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	HCC1419_BREAST	0.19	0.55	0.069	TRUE	0	0	0	2	0	TRUE	ACH-000277
HCC1419_BREAST	RIMS2--LINC00534	4	0	RIMS2	26367	chr8:105001649:+	LINC00534	54670	chr8:91466637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.046	0	RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2,LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534	HCC1419_BREAST	1	1	0.046	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SLCO4A1--TCEA2	3	3	SLCO4A1	4092	chr20:61290119:+	TCEA2	24483	chr20:62697829:+	ONLY_REF_SPLICE	YES	0	71	1	0.08	0.0345	0.0345	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2	HCC1419_BREAST	0.08	1	0.069	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CEP170B--ABHD12B	2	5	CEP170B	2366	chr14:105334892:+	ABHD12B	24518	chr14:51347170:+	ONLY_REF_SPLICE	YES	57	10	0.11	0.41	0.023	0.0574	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,ABHD12B->abhydrolase_domain_containing_12B,chr14:51338878-51371688:+	HCC1419_BREAST	0.11	0.41	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CEP170B--ABHD12B	2	5	CEP170B	2366	chr14:105334892:+	ABHD12B	23415	chr14:51345463:+	ONLY_REF_SPLICE	YES	57	4	0.11	0.64	0.023	0.0574	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,ABHD12B->abhydrolase_domain_containing_12B,chr14:51338878-51371688:+	HCC1419_BREAST	0.11	0.64	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	AC003665.1--TMEM67	3	0	AC003665.1	2195	chr17:45995818:-	TMEM67	10179	chr8:94768006:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	AC003665.1->chr17:45974696-46018776:-,TMEM67->chr8:94767072-94831462:+,transmembrane_protein_67	HCC1419_BREAST	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ANP32B--APP	3	0	ANP32B	8117	chr9:100773588:+	APP	24379	chr21:27394302:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	HCC1419_BREAST	1	1	0.0345	TRUE	0	0	0	7	0	TRUE	ACH-000277
HCC1419_BREAST	DYNLL1--ATF4	3	0	DYNLL1	5842	chr12:120934013:+	ATF4	12067	chr22:39916641:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	DYNLL1->chr12:120907653-120936296:+,dynein_light_chain_LC8-type_1,ATF4->Oncogene{Bushman},activating_transcription_factor_4,chr22:39915700-39918691:+	HCC1419_BREAST	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	LDLRAD3--SYT9	3	0	LDLRAD3	1164	chr11:35965694:+	SYT9	21449	chr11:7334626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,SYT9->chr11:7260009-7490273:+,synaptotagmin_9	HCC1419_BREAST	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	NDUFAF6--CDH17	2	4	NDUFAF6	27487	chr8:96087980:+	CDH17	40523	chr8:95201513:-	ONLY_REF_SPLICE	YES	21	0	0.22	1	0.023	0.046	NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+,CDH17->cadherin_17,chr8:95139399-95229531:-	HCC1419_BREAST	0.22	1	0.069	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SLCO4A1--TCEA2	3	0	SLCO4A1	1109	chr20:61273905:+	TCEA2	20634	chr20:62693783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2	HCC1419_BREAST	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ZFAND1--PVT1	2	4	ZFAND1	1151	chr8:82644988:-	PVT1	27090	chr8:129001408:+	ONLY_REF_SPLICE	YES	63	27	0.09	0.18	0.023	0.046	ZFAND1->chr8:82613569-82645138:-,zinc_finger_AN1-type_containing_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HCC1419_BREAST	0.09	0.18	0.069	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	NDUFAF6--CDH17	1	7	NDUFAF6	32420	chr8:96127965:+	CDH17	40523	chr8:95201513:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0115	0.0804	NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+,CDH17->cadherin_17,chr8:95139399-95229531:-	HCC1419_BREAST	0.89	1	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	RP11-512M8.5--CLIP1	1	7	RP11-512M8.5	2745	chr12:122748119:-	CLIP1	55901	chr12:122758690:-	ONLY_REF_SPLICE	YES	70	180	0.1	0.04	0.0115	0.0804	GTEx_FI:{Brain=[count:3=pct:0.5],Esophagus=[count:2=pct:0.5],Nerve=[count:1=pct:0.6]},LOCAL_REARRANGEMENT:-:[5009],RP11-512M8.5->chr12:122692326-122750970:-,CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-	HCC1419_BREAST	0.04	0.1	0.0919	TRUE	1	10	0	1	7	TRUE	ACH-000277
HCC1419_BREAST	C2orf82--EIF4E2	2	1	C2orf82	5282	chr2:233740832:+	EIF4E2	14069	chr2:233421126:+	ONLY_REF_SPLICE	YES	0	18	1	0.14	0.023	0.0115	C2orf82->chr2:233721980-233743418:+,chromosome_2_open_reading_frame_82,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	HCC1419_BREAST	0.14	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CEP170B--ABHD12B	2	1	CEP170B	1234	chr14:105331850:+	ABHD12B	23415	chr14:51345463:+	ONLY_REF_SPLICE	YES	2	4	0.6	0.43	0.023	0.0115	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,ABHD12B->abhydrolase_domain_containing_12B,chr14:51338878-51371688:+	HCC1419_BREAST	0.43	0.6	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	RIMS2--LINC00534	2	1	RIMS2	26367	chr8:105001649:+	LINC00534	51965	chr8:91363769:+	ONLY_REF_SPLICE	YES	38	0	0.07	1	0.023	0.0115	RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2,LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534	HCC1419_BREAST	0.07	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	AC139100.2--TXNL4A	2	0	AC139100.2	1331	chr18:77906137:+	TXNL4A	21236	chr18:77737701:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	AC139100.2->chr18:77905807-77936315:+,TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CCDC77--LDLR	2	0	CCDC77	14934	chr12:547720:+	LDLR	27491	chr19:11215896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77,LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	EIF3A--PCMTD2	2	0	EIF3A	15164	chr10:120809313:-	PCMTD2	29115	chr20:62891295:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A,PCMTD2->chr20:62887094-62926855:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_2	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ERBB4--FUS	2	0	ERBB4	1393	chr2:213403173:-	FUS	53122	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	{Klijn_CCL:Lung=1},ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	FRYL--DCUN1D4	2	0	FRYL	1245	chr4:48782095:-	DCUN1D4	88332	chr4:52729603:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	RNF19A--YWHAZ	2	0	RNF19A	4601	chr8:101322095:-	YWHAZ	30941	chr8:101937267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	RNF19A->chr8:101269288-101348446:-,ring_finger_protein_19A,_RBR_E3_ubiquitin_protein_ligase,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SLCO4A1--TCEA2	2	0	SLCO4A1	1109	chr20:61273905:+	TCEA2	24483	chr20:62697829:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SNW1--GLRX5	2	0	SNW1	1094	chr14:78227457:-	GLRX5	21258	chr14:96010284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	SNW1->SNW_domain_containing_1,chr14:78183942-78227550:-,GLRX5->chr14:95999840-96011061:+,glutaredoxin_5	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	TMTC2--GRB7	2	0	TMTC2	1790	chr12:83081448:+	GRB7	27488	chr17:37898505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
LMSU_STOMACH	SMYD3--RP11-439E19.8	272	76	SMYD3	3707	chr1:246580598:-	RP11-439E19.8	36724	chr1:246973335:-	ONLY_REF_SPLICE	YES	128	0	0.73	1	3.8109	1.0648	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,RP11-439E19.8->chr1:246935139-246993361:-	LMSU_STOMACH	0.73	1	4.8757	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	VMP1--MRC2	112	69	VMP1	10238	chr17:57851246:+	MRC2	24686	chr17:60741909:+	ONLY_REF_SPLICE	YES	100	65	0.64	0.74	1.5692	0.9667	VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2	LMSU_STOMACH	0.64	0.74	2.5359	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	ADAMTS2--RP11-798K23.4	40	24	ADAMTS2	2636	chr5:178770768:-	RP11-798K23.4	32863	chr5:178930741:-	ONLY_REF_SPLICE	YES	10	0	0.86	1	0.5604	0.3363	GTEx_FI:{Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},ADAMTS2->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_2,chr5:178537852-178772431:-,RP11-798K23.4->chr5:178930323-178942580:-	LMSU_STOMACH	0.86	1	0.8967	TRUE	1	3	0	2	3	TRUE	ACH-000255
LMSU_STOMACH	TEAD4--B4GALNT3	32	12	TEAD4	1711	chr12:3069206:+	B4GALNT3	17702	chr12:644332:+	ONLY_REF_SPLICE	YES	40	0	0.52	1	0.4483	0.1681	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,B4GALNT3->beta-1,4-N-acetyl-galactosaminyltransferase_3,chr12:569530-672675:+	LMSU_STOMACH	0.52	1	0.6164	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	MPDZ--SLC25A51	31	7	MPDZ	3431	chr9:13247634:-	SLC25A51	58359	chr9:37899947:-	ONLY_REF_SPLICE	YES	9	13	0.81	0.75	0.4343	0.0981	MPDZ->chr9:13105703-13279589:-,multiple_PDZ_domain_crumbs_cell_polarity_complex_component,SLC25A51->chr9:37879400-37904350:-,solute_carrier_family_25_member_51	LMSU_STOMACH	0.75	0.81	0.5324	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	CD99--ATP11C	26	7	CD99	1249	chrX:2609468:+	ATP11C	44007	chrX:138840026:-	ONLY_REF_SPLICE	YES	135	34	0.2	0.49	0.3643	0.0981	CD99->CD99_molecule,chrX:2609220-2659350:+,chrY:2559220-2609350:+,ATP11C->ATPase_phospholipid_transporting_11C,chrX:138808505-139027435:-	LMSU_STOMACH	0.2	0.49	0.4624	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	DYNC2H1--CERS3	26	7	DYNC2H1	91652	chr11:103339433:+	CERS3	112992	chr15:100943070:-	ONLY_REF_SPLICE	YES	384	0	0.08	1	0.3643	0.0981	DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,CERS3->ceramide_synthase_3,chr15:100940600-101085200:-	LMSU_STOMACH	0.08	1	0.4624	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	ARAP1--CPHL1P	19	10	ARAP1	23094	chr11:72407594:-	CPHL1P	37823	chr3:148994688:-	ONLY_REF_SPLICE	YES	55	0	0.35	1	0.2662	0.1401	ARAP1->ArfGAP_with_RhoGAP_domain,_ankyrin_repeat_and_PH_domain_1,chr11:72396114-72504644:-,CPHL1P->ceruloplasmin_and_hephaestin-like_1_pseudogene,chr3:148947143-149009587:-	LMSU_STOMACH	0.35	1	0.4063	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	PEX2--RP11-757G1.6	20	5	PEX2	2055	chr8:77912226:-	RP11-757G1.6	13685	chr11:68639011:+	ONLY_REF_SPLICE	YES	41	0	0.38	1	0.2802	0.0701	PEX2->chr8:77892494-77913280:-,peroxisomal_biogenesis_factor_2,RP11-757G1.6->chr11:68638132-68642010:+	LMSU_STOMACH	0.38	1	0.3503	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	SMYD3--RP11-439E19.8	1	76	SMYD3	3707	chr1:246580598:-	RP11-439E19.8	35688	chr1:246978584:-	ONLY_REF_SPLICE	YES	128	0	0.38	1	0.014	1.0648	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,RP11-439E19.8->chr1:246935139-246993361:-	LMSU_STOMACH	0.38	1	1.0788	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	ZNF75D--RP11-40F8.2	18	3	ZNF75D	3320	chrX:134475693:-	RP11-40F8.2	24046	chrX:22639174:-	ONLY_REF_SPLICE	YES	6	0	0.78	1	0.2522	0.042	ZNF75D->chrX:134382867-134478012:-,zinc_finger_protein_75D,RP11-40F8.2->chrX:22277914-23311263:-	LMSU_STOMACH	0.78	1	0.2942	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	AC083899.3--FAM135A	12	2	AC083899.3	17081	chr2:87391781:+	FAM135A	39967	chr6:71162195:+	ONLY_REF_SPLICE	YES	27	5	0.34	0.74	0.1681	0.028	AC083899.3->chr2:87352513-87423770:+,FAM135A->chr6:71122644-71270877:+,family_with_sequence_similarity_135_member_A	LMSU_STOMACH	0.34	0.74	0.1961	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	ADRBK2--KIAA1671	11	6	ADRBK2	9939	chr22:26074882:+	KIAA1671	46868	chr22:25566787:+	ONLY_REF_SPLICE	YES	13	1	0.57	0.94	0.1541	0.0841	ADRBK2->adrenergic,_beta,_receptor_kinase_2,chr22:25960816-26125261:+,KIAA1671->KIAA1671,chr22:25348697-25593415:+	LMSU_STOMACH	0.57	0.94	0.2382	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	AFF1--RP11-773D16.1	11	4	AFF1	3385	chr4:87869723:+	RP11-773D16.1	37473	chr10:81574472:-	ONLY_REF_SPLICE	YES	3	23	0.83	0.39	0.1541	0.056	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,RP11-773D16.1->chr10:81563813-81586350:-	LMSU_STOMACH	0.39	0.83	0.2101	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	FARS2--LSAMP	11	4	FARS2	1617	chr6:5261893:+	LSAMP	17825	chr3:116163802:-	ONLY_REF_SPLICE	YES	15	0	0.5	1	0.1541	0.056	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	LMSU_STOMACH	0.5	1	0.2101	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	SMYD3--RP11-439E19.8	11	0	SMYD3	1259	chr1:246670356:-	RP11-439E19.8	36724	chr1:246973335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1541	0	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,RP11-439E19.8->chr1:246935139-246993361:-	LMSU_STOMACH	1	1	0.1541	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	PPFIBP2--INSC	9	6	PPFIBP2	1824	chr11:7535352:+	INSC	44773	chr11:15197287:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1261	0.0841	PPFIBP2->PPFIA_binding_protein_2,chr11:7534529-7678358:+,INSC->chr11:15133970-15268754:+,inscuteable_homolog_(Drosophila)	LMSU_STOMACH	0.88	1	0.2102	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	CD99--ATP11C	8	9	CD99	1249	chrX:2609468:+	ATP11C	42861	chrX:138844265:-	ONLY_REF_SPLICE	YES	135	20	0.11	0.46	0.1121	0.1261	CD99->CD99_molecule,chrX:2609220-2659350:+,chrY:2559220-2609350:+,ATP11C->ATPase_phospholipid_transporting_11C,chrX:138808505-139027435:-	LMSU_STOMACH	0.11	0.46	0.2382	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	ZHX1--MCFD2	8	3	ZHX1	6291	chr8:124268078:-	MCFD2	15696	chr2:47168864:-	INCL_NON_REF_SPLICE	YES	40	0	0.22	1	0.1121	0.042	ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,MCFD2->chr2:47129009-47168994:-,multiple_coagulation_factor_deficiency_2	LMSU_STOMACH	0.22	1	0.1541	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	AFF1--RP11-773D16.1	7	6	AFF1	6061	chr4:87928576:+	RP11-773D16.1	37473	chr10:81574472:-	ONLY_REF_SPLICE	YES	4	23	0.76	0.36	0.0981	0.0841	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,RP11-773D16.1->chr10:81563813-81586350:-	LMSU_STOMACH	0.36	0.76	0.1822	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	KIAA1211--CDCA3	7	2	KIAA1211	4585	chr4:57138658:+	CDCA3	23468	chr12:6960173:-	ONLY_REF_SPLICE	YES	1	10	0.9	0.47	0.0981	0.028	KIAA1211->KIAA1211,chr4:57036361-57194791:+,CDCA3->cell_division_cycle_associated_3,chr12:6953957-6961230:-	LMSU_STOMACH	0.47	0.9	0.1261	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	ZNF75D--RP11-40F8.2	7	1	ZNF75D	1827	chrX:134477186:-	RP11-40F8.2	24046	chrX:22639174:-	ONLY_REF_SPLICE	YES	6	0	0.57	1	0.0981	0.014	ZNF75D->chrX:134382867-134478012:-,zinc_finger_protein_75D,RP11-40F8.2->chrX:22277914-23311263:-	LMSU_STOMACH	0.57	1	0.1121	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	SLC24A2--RP11-614F17.2	6	3	SLC24A2	1992	chr9:19785935:-	RP11-614F17.2	24014	chr4:132694721:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.9	0.0841	0.042	SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2,RP11-614F17.2->chr4:132694457-132712637:+	LMSU_STOMACH	0.9	1	0.1261	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	INTS4--ALG8	6	0	INTS4	2281	chr11:77702154:-	ALG8	47547	chr11:77817958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0841	0	INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,ALG8->ALG8,_alpha-1,3-glucosyltransferase,chr11:77811982-77850706:-	LMSU_STOMACH	1	1	0.0841	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	ARAP1--CPHL1P	5	2	ARAP1	23094	chr11:72407594:-	CPHL1P	38101	chr3:148994410:-	ONLY_REF_SPLICE	YES	55	4	0.11	0.64	0.0701	0.028	ARAP1->ArfGAP_with_RhoGAP_domain,_ankyrin_repeat_and_PH_domain_1,chr11:72396114-72504644:-,CPHL1P->ceruloplasmin_and_hephaestin-like_1_pseudogene,chr3:148947143-149009587:-	LMSU_STOMACH	0.11	0.64	0.0981	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	INTS8--DPY19L4	5	1	INTS8	17130	chr8:95869206:+	DPY19L4	50636	chr8:95792587:+	ONLY_REF_SPLICE	YES	49	43	0.11	0.12	0.0701	0.014	LOCAL_REARRANGEMENT:+:[19475],INTS8->chr8:95825539-95893974:+,integrator_complex_subunit_8,DPY19L4->chr8:95731931-95806064:+,dpy-19_like_4_(C._elegans)	LMSU_STOMACH	0.11	0.12	0.0841	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	REV1--AC096669.2	5	1	REV1	14475	chr2:100046302:-	AC096669.2	35876	chr2:108003320:-	ONLY_REF_SPLICE	YES	27	0	0.18	1	0.0701	0.014	REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-,AC096669.2->chr2:108002088-108159105:-	LMSU_STOMACH	0.18	1	0.0841	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	SLC24A2--RP11-614F17.2	5	0	SLC24A2	1992	chr9:19785935:-	RP11-614F17.2	26485	chr4:132712365:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0701	0	SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2,RP11-614F17.2->chr4:132694457-132712637:+	LMSU_STOMACH	1	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	STIP1--EDEM2	5	0	STIP1	1999	chr11:63953742:+	EDEM2	22941	chr20:33732821:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0701	0	STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1,EDEM2->ER_degradation_enhancing_alpha-mannosidase_like_protein_2,chr20:33703167-33865928:-	LMSU_STOMACH	1	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	AC017048.4--MTX2	4	1	AC017048.4	3438	chr2:177520248:+	MTX2	8902	chr2:177161588:+	ONLY_REF_SPLICE	YES	2	122	0.71	0.04	0.056	0.014	AC017048.4->chr2:177502438-177520686:+,MTX2->chr2:177134123-177202753:+,metaxin_2	LMSU_STOMACH	0.04	0.71	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	GNA13--AC037445.1	4	1	GNA13	3474	chr17:63049620:-	AC037445.1	12617	chr17:61416438:-	INCL_NON_REF_SPLICE	YES	56	0	0.08	1	0.056	0.014	GNA13->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_13,chr17:63006833-63052957:-,AC037445.1->chr17:61271291-61416414:-	LMSU_STOMACH	0.08	1	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	ARHGAP42--CNTN5	4	0	ARHGAP42	1180	chr11:100558563:+	CNTN5	68387	chr11:100221433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.056	0	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,CNTN5->chr11:98891683-100229616:+,contactin_5	LMSU_STOMACH	1	1	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	SLC24A2--RP11-614F17.2	3	3	SLC24A2	1992	chr9:19785935:-	RP11-614F17.2	25041	chr4:132695748:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.042	0.042	SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2,RP11-614F17.2->chr4:132694457-132712637:+	LMSU_STOMACH	1	1	0.084	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	FOCAD--KCNMA1	3	1	FOCAD	45683	chr9:20949674:+	KCNMA1	68538	chr10:78944674:-	ONLY_REF_SPLICE	YES	11	67	0.27	0.06	0.042	0.014	FOCAD->chr9:20658308-20995954:+,focadhesin,KCNMA1->chr10:78629359-79398353:-,potassium_calcium-activated_channel_subfamily_M_alpha_1	LMSU_STOMACH	0.06	0.27	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	GNA13--AC037445.1	3	1	GNA13	3474	chr17:63049620:-	AC037445.1	14881	chr17:61397852:-	ONLY_REF_SPLICE	YES	56	1	0.07	0.8	0.042	0.014	GNA13->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_13,chr17:63006833-63052957:-,AC037445.1->chr17:61271291-61416414:-	LMSU_STOMACH	0.07	0.8	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	AP001432.14--CDH9	3	0	AP001432.14	1179	chr21:38593898:+	CDH9	8871	chr5:26988489:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.042	0	AP001432.14->chr21:38593720-38610045:+,CDH9->cadherin_9,chr5:26880709-27121257:-	LMSU_STOMACH	1	1	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	AKT3--COL5A1	2	0	AKT3	25845	chr1:243708812:-	COL5A1	77672	chr9:137696821:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1	LMSU_STOMACH	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	CD99--ATP11C	1	4	CD99	1249	chrX:2609468:+	ATP11C	45067	chrX:138832311:-	ONLY_REF_SPLICE	NO	135	24	0.04	0.17	0.014	0.056	CD99->CD99_molecule,chrX:2609220-2659350:+,chrY:2559220-2609350:+,ATP11C->ATPase_phospholipid_transporting_11C,chrX:138808505-139027435:-	LMSU_STOMACH	0.04	0.17	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	CTD-2516F10.2--PSMA1	1	4	CTD-2516F10.2	7880	chr11:7471604:-	PSMA1	20929	chr11:14632697:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.014	0.056	CTD-2516F10.2->chr11:7448497-7533746:-,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	LMSU_STOMACH	0.83	1	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	GALNS--TCF25	2	0	GALNS	1213	chr16:88923166:-	TCF25	41327	chr16:89972602:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase,TCF25->chr16:89940000-89977792:+,transcription_factor_25	LMSU_STOMACH	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	KIAA0101--GAS5	2	0	KIAA0101	5437	chr15:64668942:-	GAS5	16314	chr1:173833842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	KIAA0101->KIAA0101,chr15:64657193-64679886:-,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	LMSU_STOMACH	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	LARP4--FAM20B	2	0	LARP4	2426	chr12:50794811:+	FAM20B	33094	chr1:179012850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+,FAM20B->chr1:178994939-179045697:+,family_with_sequence_similarity_20_member_B	LMSU_STOMACH	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	PPFIBP2--INSC	2	0	PPFIBP2	1824	chr11:7535352:+	INSC	49443	chr11:15212247:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	PPFIBP2->PPFIA_binding_protein_2,chr11:7534529-7678358:+,INSC->chr11:15133970-15268754:+,inscuteable_homolog_(Drosophila)	LMSU_STOMACH	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	ZBTB25--FAM49B	2	0	ZBTB25	5948	chr14:64957079:-	FAM49B	28259	chr8:130916831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	ZBTB25->chr14:64915824-64971931:-,zinc_finger_and_BTB_domain_containing_25,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	LMSU_STOMACH	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	TTC6--MIPOL1	1	1	TTC6	1162	chr14:38065213:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.014	0.014	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	LMSU_STOMACH	1	1	0.028	TRUE	0	9	0	5	8	TRUE	ACH-000255
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	GNPDA2--KLHL5	3	0	GNPDA2	1122	chr4:44728491:-	KLHL5	20878	chr4:39077585:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GNPDA2->chr4:44684217-44728612:-,glucosamine-6-phosphate_deaminase_2,KLHL5->chr4:39046659-39128477:+,kelch_like_family_member_5	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	DENND1A--PSMB7	2	0	DENND1A	24177	chr9:126202639:-	PSMB7	52173	chr9:127119194:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Heart_-_Atrial_Appendage=1},DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	2	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	FHOD3--RPRD1A	2	0	FHOD3	3459	chr18:33952707:+	RPRD1A	52266	chr18:33573263:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	GAB2--PAK1	2	0	GAB2	6290	chr11:77991647:-	PAK1	30200	chr11:77103586:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,PAK1->Oncogene{Bushman},chr11:77032752-77185680:-,p21_(RAC1)_activated_kinase_1	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	ING5--UBR2	2	0	ING5	2140	chr2:242644139:+	UBR2	56945	chr6:42641529:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ING5->chr2:242641450-242668893:+,inhibitor_of_growth_family_member_5,UBR2->chr6:42531800-42661242:+,ubiquitin_protein_ligase_E3_component_n-recognin_2	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MYO1C--PITPNA	2	0	MYO1C	2213	chr17:1394894:-	PITPNA	30211	chr17:1461853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[24906],MYO1C->chr17:1367392-1396106:-,myosin_IC,PITPNA->chr17:1421012-1466110:-,phosphatidylinositol_transfer_protein_alpha	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	1	3	0	2	2	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	PIP5K1C--NACC1	2	0	PIP5K1C	1183	chr19:3700295:-	NACC1	29093	chr19:13246014:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma,NACC1->chr19:13228917-13251955:+,nucleus_accumbens_associated_1	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	PKP3--SRSF2	2	0	PKP3	5423	chr11:397662:+	SRSF2	16895	chr17:74730644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PKP3->chr11:392614-404908:+,plakophilin_3,SRSF2->Oncogene{Bushman},chr17:74730197-74733456:-,serine/arginine-rich_splicing_factor_2	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	PLS3--COL4A5	2	0	PLS3	1087	chrX:114795587:+	COL4A5	59329	chrX:107898561:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PLS3->chrX:114795501-114885181:+,plastin_3,COL4A5->chrX:107683074-107940775:+,collagen_type_IV_alpha_5	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	RCC1--AARSD1	2	0	RCC1	2175	chr1:28834672:+	AARSD1	27675	chr17:41103911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,AARSD1->alanyl-tRNA_synthetase_domain_containing_1,chr17:41102543-41116515:-	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	SIPA1L1--HIF1A	2	0	SIPA1L1	8905	chr14:71933964:+	HIF1A	54200	chr14:62187100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SIPA1L1->chr14:71787166-72207946:+,signal_induced_proliferation_associated_1_like_1,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	TSPAN5--NFKB1	2	0	TSPAN5	2090	chr4:99578691:-	NFKB1	24177	chr4:103446669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,NFKB1->Oncogene{Bushman},chr4:103422486-103538459:+,nuclear_factor_kappa_B_subunit_1	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
LU99_LUNG	SASS6--LRRC7	142	36	SASS6	1206	chr1:100598306:-	LRRC7	52632	chr1:70573435:+	ONLY_REF_SPLICE	YES	21	0	0.89	1	1.7137	0.4345	SASS6->SAS-6_centriolar_assembly_protein,chr1:100549119-100598511:-,LRRC7->chr1:70034081-70617628:+,leucine_rich_repeat_containing_7	LU99_LUNG	0.89	1	2.1482	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	MED13L--FAM101A	129	25	MED13L	6460	chr12:116534474:-	FAM101A	44451	chr12:124634141:+	ONLY_REF_SPLICE	YES	101	0	0.6	1	1.5568	0.3017	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,FAM101A->chr12:124457788-124800570:+,family_with_sequence_similarity_101_member_A	LU99_LUNG	0.6	1	1.8585	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	MED13L--RP11-214K3.24	47	22	MED13L	6460	chr12:116534474:-	RP11-214K3.24	45174	chr12:124572811:+	INCL_NON_REF_SPLICE	YES	101	6	0.41	0.92	0.5672	0.2655	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,RP11-214K3.24->chr12:124570308-124573142:+	LU99_LUNG	0.41	0.92	0.8327	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	SASS6--LRRC7	26	31	SASS6	1206	chr1:100598306:-	LRRC7	52649	chr1:70573452:+	INCL_NON_REF_SPLICE	YES	21	0	0.73	1	0.3138	0.3741	SASS6->SAS-6_centriolar_assembly_protein,chr1:100549119-100598511:-,LRRC7->chr1:70034081-70617628:+,leucine_rich_repeat_containing_7	LU99_LUNG	0.73	1	0.6879	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	ANP32B--SEPT7	8	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0965	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	LU99_LUNG	1	1	0.0965	TRUE	1	1	0	18	1	TRUE	ACH-000444
LU99_LUNG	EDA--NHSL2	5	1	EDA	1638	chrX:68836548:+	NHSL2	31346	chrX:71358291:+	ONLY_REF_SPLICE	YES	1	6	0.86	0.5	0.0603	0.0121	EDA->chrX:68835911-69259319:+,ectodysplasin_A,NHSL2->NHS_like_2,chrX:71130938-71363424:+	LU99_LUNG	0.5	0.86	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	FAM219A--ALDH1A1	5	0	FAM219A	1334	chr9:34458235:-	ALDH1A1	14572	chr9:75567930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0603	0	FAM219A->chr9:34398182-34458568:-,family_with_sequence_similarity_219_member_A,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	LU99_LUNG	1	1	0.0603	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	C17orf76-AS1--ANXA2	4	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	LU99_LUNG	1	1	0.0483	TRUE	0	0	0	10	0	TRUE	ACH-000444
LU99_LUNG	FAM219A--ALDH1A1	3	0	FAM219A	1367	chr9:34458202:-	ALDH1A1	14572	chr9:75567930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	FAM219A->chr9:34398182-34458568:-,family_with_sequence_similarity_219_member_A,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	LU99_LUNG	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	PACS1--RP11-707M1.1	2	1	PACS1	1480	chr11:65838313:+	RP11-707M1.1	38747	chr11:49830090:+	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0241	0.0121	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,RP11-707M1.1->chr11:49580098-49831971:+	LU99_LUNG	0.16	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	CALM2--EEF1D	2	0	CALM2	1161	chr2:47403580:-	EEF1D	26064	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	LU99_LUNG	1	1	0.0241	TRUE	0	6	0	16	3	TRUE	ACH-000444
LU99_LUNG	FAM219A--ALDH1A1	2	0	FAM219A	1367	chr9:34458202:-	ALDH1A1	15652	chr9:75555168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	FAM219A->chr9:34398182-34458568:-,family_with_sequence_similarity_219_member_A,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	LARP4B--WDR37	2	0	LARP4B	1197	chr10:977368:-	WDR37	45113	chr10:1170158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	SLC25A21--CNTRL	2	0	SLC25A21	1586	chr14:37641486:-	CNTRL	50845	chr9:123916999:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21,CNTRL->Oncogene{Bushman},centriolin,chr9:123837141-123939888:+	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	SUSD1--UGCG	2	0	SUSD1	17137	chr9:114840818:-	UGCG	27707	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	SUSD1->chr9:114803065-114937688:-,sushi_domain_containing_1,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	LU99_LUNG	1	1	0.0241	TRUE	0	1	0	1	1	TRUE	ACH-000444
LU99_LUNG	THOP1--CTD-2369P2.10	2	0	THOP1	1219	chr19:2785676:+	CTD-2369P2.10	20101	chr19:10426435:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	THOP1->chr19:2785458-2813599:+,thimet_oligopeptidase_1,CTD-2369P2.10->chr19:10416103-10426685:-	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	TMEM18--DAZAP1	2	0	TMEM18	1151	chr2:677289:-	DAZAP1	15877	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},TMEM18->chr2:667335-677439:-,transmembrane_protein_18,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	LU99_LUNG	1	1	0.0241	TRUE	1	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	VAV2--BRD3	2	0	VAV2	1530	chr9:136857197:-	BRD3	42940	chr9:136918712:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[37701],VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,BRD3->Oncogene{Bushman},bromodomain_containing_3,chr9:136895427-136933657:-	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	2	0	TRUE	ACH-000444
LU99_LUNG	WWC2--DCTD	2	0	WWC2	1330	chr4:184020775:+	DCTD	38209	chr4:183836728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},WWC2->WW_and_C2_domain_containing_2,chr4:184020446-184241930:+,DCTD->chr4:183811213-183839089:-,dCMP_deaminase	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	APTX--ZNF169	1	3	APTX	11552	chr9:32984629:-	ZNF169	20682	chr9:97054623:+	ONLY_REF_SPLICE	NO	69	2	0.05	0.67	0.0121	0.0362	APTX->aprataxin,chr9:32972604-33025166:-,ZNF169->chr9:97021593-97063736:+,zinc_finger_protein_169	LU99_LUNG	0.05	0.67	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	MED13L--FAM101A	1	1	MED13L	1279	chr12:116714865:-	FAM101A	44451	chr12:124634141:+	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.0121	0.0121	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,FAM101A->chr12:124457788-124800570:+,family_with_sequence_similarity_101_member_A	LU99_LUNG	0.05	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	PACS1--RP11-707M1.1	1	1	PACS1	1480	chr11:65838313:+	RP11-707M1.1	37864	chr11:49829207:+	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0121	0.0121	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,RP11-707M1.1->chr11:49580098-49831971:+	LU99_LUNG	0.11	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000444
NCIH358_LUNG	UBAP2--CCDC171	193	2	UBAP2	1125	chr9:34048823:-	CCDC171	65426	chr9:15846700:+	ONLY_REF_SPLICE	YES	0	5	1	0.97	1.7676	0.0183	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171	NCIH358_LUNG	0.97	1	1.7859	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	TP53--GLP2R	137	24	TP53	1162	chr17:7590695:-	GLP2R	31841	chr17:9791249:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.2547	0.2198	TP53->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr17:7565097-7590856:-,tumor_protein_p53,GLP2R->chr17:9725523-9795419:+,glucagon_like_peptide_2_receptor	NCIH358_LUNG	1	1	1.4745	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	MYH9--FOXRED2	55	18	MYH9	16593	chr22:36710190:-	FOXRED2	48469	chr22:36897454:-	ONLY_REF_SPLICE	YES	458	68	0.14	0.52	0.5037	0.1649	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[99174],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,FOXRED2->FAD_dependent_oxidoreductase_domain_containing_2,chr22:36883237-36903148:-	NCIH358_LUNG	0.14	0.52	0.6686	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	GALK2--FAM214A	26	15	GALK2	9623	chr15:49493447:+	FAM214A	36116	chr15:52906054:-	ONLY_REF_SPLICE	YES	65	25	0.39	0.62	0.2381	0.1374	{Klijn_CCL:Lung=1},GALK2->chr15:49447853-49660066:+,galactokinase_2,FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A	NCIH358_LUNG	0.39	0.62	0.3755	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	CIRH1A--VAC14	19	9	CIRH1A	7458	chr16:69173817:+	VAC14	37931	chr16:70778482:-	ONLY_REF_SPLICE	YES	128	51	0.18	0.35	0.174	0.0824	CIRH1A->chr16:69165194-69265033:+,VAC14->Oncogene{Bushman},Vac14,_PIKFYVE_complex_component,chr16:70721342-70835064:-	NCIH358_LUNG	0.18	0.35	0.2564	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	TP53--GLP2R	8	18	TP53	1162	chr17:7590695:-	GLP2R	32883	chr17:9792687:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0733	0.1649	TP53->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr17:7565097-7590856:-,tumor_protein_p53,GLP2R->chr17:9725523-9795419:+,glucagon_like_peptide_2_receptor	NCIH358_LUNG	1	1	0.2382	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	CCDC57--PACS1	7	6	CCDC57	24489	chr17:80109436:-	PACS1	46666	chr11:65960957:+	ONLY_REF_SPLICE	YES	31	21	0.3	0.38	0.0641	0.055	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	NCIH358_LUNG	0.3	0.38	0.1191	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	CDC42EP4--MLST8	7	2	CDC42EP4	8578	chr17:71280453:-	MLST8	13324	chr16:2255304:+	INCL_NON_REF_SPLICE	YES	12	0	0.43	1	0.0641	0.0183	CDC42EP4->CDC42_effector_protein_4,chr17:71279763-71308314:-,MLST8->MTOR_associated_protein,_LST8_homolog,chr16:2254249-2259417:+	NCIH358_LUNG	0.43	1	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	CTD-2251F13.1--PRKD1	7	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH358_LUNG	1	1	0.0641	TRUE	0	3	0	9	3	TRUE	ACH-000860
NCIH358_LUNG	GALK2--FAM214A	3	15	GALK2	9623	chr15:49493447:+	FAM214A	33267	chr15:52950994:-	ONLY_REF_SPLICE	YES	65	29	0.22	0.38	0.0275	0.1374	{Klijn_CCL:Lung=1},GALK2->chr15:49447853-49660066:+,galactokinase_2,FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A	NCIH358_LUNG	0.22	0.38	0.1649	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	FBXO39--RPAIN	5	2	FBXO39	1050	chr17:6679591:+	RPAIN	13913	chr17:5324616:+	ONLY_REF_SPLICE	YES	0	107	1	0.06	0.0458	0.0183	FBXO39->F-box_protein_39,chr17:6679542-6700420:+,RPAIN->RPA_interacting_protein,chr17:5322961-5336196:+	NCIH358_LUNG	0.06	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	CTD-2251F13.1--PRKD1	5	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0458	0.0092	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH358_LUNG	0.86	1	0.055	TRUE	0	3	0	8	3	TRUE	ACH-000860
NCIH358_LUNG	ST3GAL3--C1orf222	5	1	ST3GAL3	20706	chr1:44386600:+	C1orf222	49414	chr1:1878493:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0458	0.0092	ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,C1orf222->chr1:1853396-1935276:-	NCIH358_LUNG	0.46	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	WWC2--ING2	4	5	WWC2	5601	chr4:184130178:+	ING2	38173	chr4:184431435:+	ONLY_REF_SPLICE	YES	11	54	0.45	0.14	0.0366	0.0458	WWC2->WW_and_C2_domain_containing_2,chr4:184020446-184241930:+,ING2->Oncogene{Bushman},chr4:184426147-184432249:+,inhibitor_of_growth_family_member_2	NCIH358_LUNG	0.14	0.45	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	COX7B2--GABRA2	4	0	COX7B2	5416	chr4:46846977:-	GABRA2	12684	chr4:46390733:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	COX7B2->chr4:46736844-46911252:-,cytochrome_c_oxidase_subunit_7B2,GABRA2->chr4:46250444-46477247:-,gamma-aminobutyric_acid_type_A_receptor_alpha2_subunit	NCIH358_LUNG	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	DPP3--OGFOD3	4	0	DPP3	9174	chr11:66259227:+	OGFOD3	32027	chr17:80350410:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	NCIH358_LUNG	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	LINC00624--FMO5	4	0	LINC00624	3701	chr1:146986158:-	FMO5	8747	chr1:146696658:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	LINC00624->chr1:146986158-146989699:-,long_intergenic_non-protein_coding_RNA_624,FMO5->chr1:146646930-146714700:-,flavin_containing_monooxygenase_5	NCIH358_LUNG	1	1	0.0366	TRUE	0	3	1	2	3	TRUE	ACH-000860
NCIH358_LUNG	UBAP2--CCDC171	4	0	UBAP2	1072	chr9:34048876:-	CCDC171	65426	chr9:15846700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171	NCIH358_LUNG	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	CTD-2544M6.1--LINC00923	3	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	10269	chr15:98301891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	NCIH358_LUNG	1	1	0.0275	TRUE	0	3	0	6	3	TRUE	ACH-000860
NCIH358_LUNG	UBAP2--CCDC171	2	2	UBAP2	1125	chr9:34048823:-	CCDC171	64363	chr9:15845637:+	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0183	0.0183	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171	NCIH358_LUNG	0.44	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	SNX25--SPOCK3	2	1	SNX25	10527	chr4:186231970:+	SPOCK3	33881	chr4:167983688:-	ONLY_REF_SPLICE	YES	11	6	0.21	0.33	0.0183	0.0092	SNX25->chr4:186125391-186291339:+,sorting_nexin_25,SPOCK3->chr4:167654535-168155947:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_3	NCIH358_LUNG	0.21	0.33	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	ST3GAL3--C1orf222	2	1	ST3GAL3	20706	chr1:44386600:+	C1orf222	50029	chr1:1877878:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0183	0.0092	ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,C1orf222->chr1:1853396-1935276:-	NCIH358_LUNG	0.3	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	APOA1BP--RPL4	2	0	APOA1BP	1448	chr1:156562001:+	RPL4	11401	chr15:66795088:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	APOA1BP->chr1:156561554-156564091:+,RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4	NCIH358_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH358_LUNG	1	1	0.0183	TRUE	0	1	0	7	1	TRUE	ACH-000860
NCIH358_LUNG	TXN--FCRL2	2	0	TXN	4211	chr9:113007058:-	FCRL2	15343	chr1:157719467:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	TXN->Oncogene{Bushman},chr9:113006091-113018920:-,thioredoxin,FCRL2->Fc_receptor_like_2,chr1:157715523-157746922:-	NCIH358_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	GALK2--FAM214A	1	3	GALK2	9623	chr15:49493447:+	FAM214A	37301	chr15:52903974:-	ONLY_REF_SPLICE	YES	65	21	0.06	0.16	0.0092	0.0275	{Klijn_CCL:Lung=1},GALK2->chr15:49447853-49660066:+,galactokinase_2,FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A	NCIH358_LUNG	0.06	0.16	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	RP11-368L12.1--RP11-96H17.1	1	2	RP11-368L12.1	4754	chr16:63368504:-	RP11-96H17.1	10295	chr16:63153269:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0092	0.0183	GTEx_FI:{Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4]},RP11-368L12.1->chr16:63348168-63651950:-,RP11-96H17.1->chr16:63090690-63163558:-	NCIH358_LUNG	1	1	0.0275	TRUE	1	3	0	2	3	TRUE	ACH-000860
NCIH358_LUNG	BTBD2--FCRL2	1	1	BTBD2	4938	chr19:2015296:-	FCRL2	26182	chr1:157719467:-	ONLY_REF_SPLICE	YES	42	0	0.05	1	0.0092	0.0092	BTBD2->BTB_domain_containing_2,chr19:1985447-2034880:-,FCRL2->Fc_receptor_like_2,chr1:157715523-157746922:-	NCIH358_LUNG	0.05	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000860
IGROV1_OVARY	RAB3B--TXNDC12	77	28	RAB3B	1213	chr1:52456224:-	TXNDC12	26813	chr1:52494302:-	ONLY_REF_SPLICE	YES	94	285	0.53	0.27	0.9024	0.3281	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[29367],RAB3B->RAB3B,_member_RAS_oncogene_family,chr1:52373628-52456436:-,TXNDC12->chr1:52485803-52521843:-,thioredoxin_domain_containing_12	IGROV1_OVARY	0.27	0.53	1.2305	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	CTDNEP1--CLDN7	19	3	CTDNEP1	2297	chr17:7154514:-	CLDN7	12862	chr17:7164304:-	ONLY_REF_SPLICE	YES	52	12	0.3	0.65	0.2227	0.0352	LOCAL_REARRANGEMENT:-:[7412],CTDNEP1->CTD_nuclear_envelope_phosphatase_1,chr17:7146910-7155810:-,CLDN7->chr17:7163222-7167302:-,claudin_7	IGROV1_OVARY	0.3	0.65	0.2579	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	RAB3B--TXNDC12	7	31	RAB3B	1213	chr1:52456224:-	TXNDC12	25631	chr1:52496220:-	ONLY_REF_SPLICE	YES	94	361	0.29	0.1	0.082	0.3633	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[29367],RAB3B->RAB3B,_member_RAS_oncogene_family,chr1:52373628-52456436:-,TXNDC12->chr1:52485803-52521843:-,thioredoxin_domain_containing_12	IGROV1_OVARY	0.1	0.29	0.4453	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	CTDNEP1--CLDN7	9	8	CTDNEP1	2297	chr17:7154514:-	CLDN7	11504	chr17:7165662:-	ONLY_REF_SPLICE	YES	52	1	0.25	0.94	0.1055	0.0938	LOCAL_REARRANGEMENT:-:[7412],CTDNEP1->CTD_nuclear_envelope_phosphatase_1,chr17:7146910-7155810:-,CLDN7->chr17:7163222-7167302:-,claudin_7	IGROV1_OVARY	0.25	0.94	0.1993	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	NID2--RP11-1033H12.1	3	0	NID2	11341	chr14:52495440:-	RP11-1033H12.1	28226	chr14:52578039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	LOCAL_REARRANGEMENT:-:[42128],NID2->chr14:52471521-52535712:-,nidogen_2,RP11-1033H12.1->chr14:52577840-52596343:-	IGROV1_OVARY	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	RP11-283I3.4--KDM5A	2	1	RP11-283I3.4	1827	chr12:365639:-	KDM5A	38663	chr12:395373:-	ONLY_REF_SPLICE	YES	0	30	1	0.09	0.0234	0.0117	LOCAL_REARRANGEMENT:-:[22830],RP11-283I3.4->chr12:362608-366465:-,KDM5A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:389295-498620:-,lysine_demethylase_5A	IGROV1_OVARY	0.09	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	CTDNEP1--CLDN7	2	0	CTDNEP1	1078	chr17:7155733:-	CLDN7	12862	chr17:7164304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	LOCAL_REARRANGEMENT:-:[7412],CTDNEP1->CTD_nuclear_envelope_phosphatase_1,chr17:7146910-7155810:-,CLDN7->chr17:7163222-7167302:-,claudin_7	IGROV1_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	RTTN--SOHLH1	1	1	RTTN	52581	chr18:67684643:-	SOHLH1	59563	chr9:138590972:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0117	0.0117	RTTN->chr18:67671029-67873181:-,rotatin,SOHLH1->chr9:138585253-138591374:-,spermatogenesis_and_oogenesis_specific_basic_helix-loop-helix_1	IGROV1_OVARY	0.4	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000966
IM95_STOMACH	DHCR24--USP24	46	38	DHCR24	3863	chr1:55341615:-	USP24	40108	chr1:55598373:-	ONLY_REF_SPLICE	YES	563	113	0.13	0.43	0.5245	0.4333	DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-,USP24->Oncogene{Bushman},chr1:55532032-55680786:-,ubiquitin_specific_peptidase_24	IM95_STOMACH	0.13	0.43	0.9578	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	THSD4--LRRC49	39	11	THSD4	2163	chr15:71433895:+	LRRC49	57770	chr15:71272440:+	ONLY_REF_SPLICE	YES	2	1	0.96	0.98	0.4447	0.1254	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:6],{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[46877],THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,LRRC49->chr15:71145578-71342414:+,leucine_rich_repeat_containing_49	IM95_STOMACH	0.96	0.98	0.5701	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	PSD3--RP11-1080G15.1	12	5	PSD3	3423	chr8:18871073:-	RP11-1080G15.1	54304	chr8:18942588:-	ONLY_REF_SPLICE	YES	26	0	0.4	1	0.1368	0.057	GTEx_FI:{Salivary_Gland=[count:1=pct:2.6],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[262],PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,RP11-1080G15.1->chr8:18942502-19116979:-	IM95_STOMACH	0.4	1	0.1938	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	ITGA6--AC104088.1	7	13	ITGA6	6337	chr2:173335833:+	AC104088.1	28794	chr2:173188078:+	ONLY_REF_SPLICE	YES	331	1	0.06	0.95	0.0798	0.1482	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,AC104088.1->chr2:173180015-173188465:+	IM95_STOMACH	0.06	0.95	0.228	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	ITGA6--AC104088.1	6	11	ITGA6	5205	chr2:173334108:+	AC104088.1	28794	chr2:173188078:+	ONLY_REF_SPLICE	YES	183	1	0.09	0.94	0.0684	0.1254	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,AC104088.1->chr2:173180015-173188465:+	IM95_STOMACH	0.09	0.94	0.1938	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	ITGA6--AC104088.1	5	8	ITGA6	3822	chr2:173332288:+	AC104088.1	28794	chr2:173188078:+	ONLY_REF_SPLICE	YES	266	1	0.05	0.93	0.057	0.0912	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,AC104088.1->chr2:173180015-173188465:+	IM95_STOMACH	0.05	0.93	0.1482	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	THSD4--LRRC49	4	7	THSD4	2163	chr15:71433895:+	LRRC49	58854	chr15:71276433:+	ONLY_REF_SPLICE	YES	2	3	0.85	0.79	0.0456	0.0798	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:6],{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[46877],THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,LRRC49->chr15:71145578-71342414:+,leucine_rich_repeat_containing_49	IM95_STOMACH	0.79	0.85	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	PSD3--RP11-1080G15.1	2	5	PSD3	3423	chr8:18871073:-	RP11-1080G15.1	53277	chr8:18944431:-	ONLY_REF_SPLICE	YES	26	0	0.21	1	0.0228	0.057	GTEx_FI:{Salivary_Gland=[count:1=pct:2.6],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[262],PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,RP11-1080G15.1->chr8:18942502-19116979:-	IM95_STOMACH	0.21	1	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	THSD4--LRRC49	2	2	THSD4	2163	chr15:71433895:+	LRRC49	60313	chr15:71300718:+	ONLY_REF_SPLICE	YES	2	50	0.67	0.07	0.0228	0.0228	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:6],{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[46877],THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,LRRC49->chr15:71145578-71342414:+,leucine_rich_repeat_containing_49	IM95_STOMACH	0.07	0.67	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	C17orf76-AS1--SUPT3H	2	0	C17orf76-AS1	1593	chr17:16342728:+	SUPT3H	14846	chr6:45333038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	C17orf76-AS1->chr17:16342136-16381992:+,SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-	IM95_STOMACH	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	CDC42SE2--CTD-2410N18.5	2	0	CDC42SE2	5200	chr5:130599859:+	CTD-2410N18.5	21445	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,CTD-2410N18.5->chr5:133502861-133561762:-	IM95_STOMACH	1	1	0.0228	TRUE	0	1	0	3	1	TRUE	ACH-000919
IM95_STOMACH	COL4A5--RBM41	2	0	COL4A5	1363	chrX:107683436:+	RBM41	63421	chrX:106312632:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	COL4A5->chrX:107683074-107940775:+,collagen_type_IV_alpha_5,RBM41->RNA_binding_motif_protein_41,chrX:106307650-106362057:-	IM95_STOMACH	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	GLB1--UBP1	2	0	GLB1	1220	chr3:33138503:-	UBP1	30975	chr3:33467233:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GLB1->Oncogene{Bushman},chr3:33038100-33138722:-,galactosidase_beta_1,UBP1->chr3:33429828-33482863:-,upstream_binding_protein_1_(LBP-1a)	IM95_STOMACH	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	HIAT1--ZMYND11	2	0	HIAT1	1220	chr1:100503872:+	ZMYND11	19320	chr10:225934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	HIAT1->chr1:100503653-100548933:+,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	IM95_STOMACH	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	MTX2--COL28A1	2	0	MTX2	1275	chr2:177134397:+	COL28A1	32080	chr7:7495743:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	MTX2->chr2:177134123-177202753:+,metaxin_2,COL28A1->Oncogene{Bushman},chr7:7395834-7575484:-,collagen_type_XXVIII_alpha_1	IM95_STOMACH	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	OTUB1--COX8A	2	0	OTUB1	3602	chr11:63756224:+	COX8A	14254	chr11:63743697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[9310],OTUB1->OTU_deubiquitinase,_ubiquitin_aldehyde_binding_1,chr11:63753325-63769283:+,COX8A->chr11:63742079-63744015:+,cytochrome_c_oxidase_subunit_8A	IM95_STOMACH	1	1	0.0228	TRUE	0	1	0	4	1	TRUE	ACH-000919
IM95_STOMACH	UVRAG--RNF169	2	0	UVRAG	7929	chr11:75599947:+	RNF169	36229	chr11:74545721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,RNF169->chr11:74459913-74553458:+,ring_finger_protein_169	IM95_STOMACH	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000919
JL1_PLEURA	GLYCTK--CCR3	44	24	GLYCTK	3826	chr3:52325127:+	CCR3	13469	chr3:46283893:+	ONLY_REF_SPLICE	YES	3	0	0.96	1	0.635	0.3464	GLYCTK->chr3:52321105-52329272:+,glycerate_kinase,CCR3->C-C_motif_chemokine_receptor_3,chr3:46205096-46308197:+	JL1_PLEURA	0.96	1	0.9814	TRUE	0	0	0	1	0	TRUE	ACH-000645
JL1_PLEURA	COL1A1--COL6A1	45	0	COL1A1	6491	chr17:48273284:-	COL6A1	32210	chr21:47414081:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6494	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	JL1_PLEURA	1	1	0.6494	TRUE	0	1	0	5	0	TRUE	ACH-000645
JL1_PLEURA	FAM102B--GLMN	6	1	FAM102B	1477	chr1:109103187:+	GLMN	37213	chr1:92712701:-	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0866	0.0144	FAM102B->chr1:109102711-109187522:+,family_with_sequence_similarity_102_member_B,GLMN->Oncogene{Bushman},chr1:92711959-92764544:-,glomulin,_FKBP_associated_protein	JL1_PLEURA	0.78	1	0.101	TRUE	0	0	0	1	0	TRUE	ACH-000645
JL1_PLEURA	GLYCTK--CCR3	2	11	GLYCTK	3826	chr3:52325127:+	CCR3	17443	chr3:46306639:+	ONLY_REF_SPLICE	YES	3	1	0.81	0.93	0.0289	0.1587	GLYCTK->chr3:52321105-52329272:+,glycerate_kinase,CCR3->C-C_motif_chemokine_receptor_3,chr3:46205096-46308197:+	JL1_PLEURA	0.81	0.93	0.1876	TRUE	0	0	0	1	0	TRUE	ACH-000645
JL1_PLEURA	SPARC--ATOX1	2	0	SPARC	6913	chr5:151052690:-	ATOX1	24310	chr5:151126010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:-:[55151],SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-	JL1_PLEURA	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000645
JL1_PLEURA	FAM102B--GLMN	1	1	FAM102B	1477	chr1:109103187:+	GLMN	36368	chr1:92713546:-	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.0144	0.0144	FAM102B->chr1:109102711-109187522:+,family_with_sequence_similarity_102_member_B,GLMN->Oncogene{Bushman},chr1:92711959-92764544:-,glomulin,_FKBP_associated_protein	JL1_PLEURA	0.33	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000645
JL1_PLEURA	SACM1L--FAM19A1	1	1	SACM1L	20516	chr3:45781136:+	FAM19A1	32789	chr3:68466430:+	ONLY_REF_SPLICE	YES	37	0	0.05	1	0.0144	0.0144	{Klijn_CCL:Other=1},SACM1L->SAC1_suppressor_of_actin_mutations_1-like_(yeast),chr3:45730548-45786916:+,FAM19A1->chr3:68053359-68594776:+,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A1	JL1_PLEURA	0.05	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000645
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBNL1--RAF1	145	269	MBNL1	15134	chr3:152164546:+	RAF1	32194	chr3:12650422:-	ONLY_REF_SPLICE	YES	161	129	0.72	0.76	1.5764	2.9244	{Klijn_CCL:Lymphoid=1},MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,RAF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},Raf-1_proto-oncogene,_serine/threonine_kinase,chr3:12625100-12705725:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.76	4.5008	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBNL1--RAF1	103	204	MBNL1	14080	chr3:152163328:+	RAF1	32194	chr3:12650422:-	ONLY_REF_SPLICE	YES	164	129	0.65	0.7	1.1198	2.2178	{Klijn_CCL:Lymphoid=1},MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,RAF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},Raf-1_proto-oncogene,_serine/threonine_kinase,chr3:12625100-12705725:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.7	3.3376	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAC2--PCNX	128	72	UBAC2	5795	chr13:99896878:+	PCNX	56780	chr14:71540262:+	ONLY_REF_SPLICE	YES	124	40	0.62	0.83	1.3915	0.7827	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,PCNX->chr14:71374122-71582099:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.83	2.1742	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT4	82	53	KMT2A	16644	chr11:118353210:+	MLLT4	53803	chr6:168265231:+	ONLY_REF_SPLICE	YES	23	0	0.85	1	0.8915	0.5762	Cosmic{samples=29,mutations=27,papers=26},Mitelman{Skin=2,ALL=2,AML=12},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	1.4677	TRUE	0	1	0	1	1	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUDT3--RP11-404F10.2	64	31	NUDT3	1411	chr6:34360041:-	RP11-404F10.2	22416	chr1:160648733:+	ONLY_REF_SPLICE	YES	103	0	0.48	1	0.6958	0.337	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,RP11-404F10.2->chr1:160640568-160653698:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	1.0328	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCNX--UBAC2	47	36	PCNX	34724	chr14:71524441:+	UBAC2	67137	chr13:99966351:+	ONLY_REF_SPLICE	YES	36	123	0.7	0.4	0.511	0.3914	PCNX->chr14:71374122-71582099:+,UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.7	0.9024	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GIGYF2--RUVBL1	37	20	GIGYF2	4148	chr2:233568199:+	RUVBL1	74859	chr3:127784063:-	ONLY_REF_SPLICE	YES	39	1	0.59	0.98	0.4022	0.2174	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.98	0.6196	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUDT3--RP11-404F10.2	13	31	NUDT3	1411	chr6:34360041:-	RP11-404F10.2	22419	chr1:160648736:+	INCL_NON_REF_SPLICE	YES	103	1	0.3	0.98	0.1413	0.337	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,RP11-404F10.2->chr1:160640568-160653698:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.98	0.4783	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT4	13	22	KMT2A	16241	chr11:118352807:+	MLLT4	53803	chr6:168265231:+	ONLY_REF_SPLICE	YES	16	0	0.69	1	0.1413	0.2392	Cosmic{samples=29,mutations=27,papers=26},Mitelman{Skin=2,ALL=2,AML=12},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.3805	TRUE	0	1	0	1	1	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GIGYF2--RUVBL1	8	29	GIGYF2	4148	chr2:233568199:+	RUVBL1	73581	chr3:127787756:-	ONLY_REF_SPLICE	YES	39	0	0.49	1	0.087	0.3153	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	1	0.4023	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCNX--UBAC2	1	39	PCNX	34724	chr14:71524441:+	UBAC2	64696	chr13:99960937:+	ONLY_REF_SPLICE	NO	36	146	0.53	0.22	0.0109	0.424	PCNX->chr14:71374122-71582099:+,UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.53	0.4349	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GIGYF2--RUVBL1	3	25	GIGYF2	4148	chr2:233568199:+	RUVBL1	73685	chr3:127787652:-	INCL_NON_REF_SPLICE	YES	39	5	0.42	0.85	0.0326	0.2718	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.85	0.3044	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAC2--PCNX	3	22	UBAC2	4002	chr13:99890808:+	PCNX	56780	chr14:71540262:+	ONLY_REF_SPLICE	YES	196	40	0.11	0.38	0.0326	0.2392	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,PCNX->chr14:71374122-71582099:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.38	0.2718	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-255H23.4--ERP29	4	1	RP11-255H23.4	2235	chr19:24009900:-	ERP29	9430	chr12:112451258:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.5	0.0435	0.0109	RP11-255H23.4->chr19:24000401-24057503:-,ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--UBAP2	4	0	RCC1	2175	chr1:28834672:+	UBAP2	36712	chr9:33948585:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0435	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUDT3--RP11-404F10.2	1	9	NUDT3	1411	chr6:34360041:-	RP11-404F10.2	23529	chr1:160653389:+	ONLY_REF_SPLICE	YES	103	11	0.09	0.48	0.0109	0.0978	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,RP11-404F10.2->chr1:160640568-160653698:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.48	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABI1--YME1L1	2	0	ABI1	3560	chr10:27112067:-	YME1L1	37580	chr10:27409476:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,YME1L1->YME1_like_1_ATPase,chr10:27399383-27444195:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--RHOA	2	0	C17orf76-AS1	1593	chr17:16342728:+	RHOA	16477	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	C17orf76-AS1->chr17:16342136-16381992:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	4	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX60L--PITPNC1	2	0	DDX60L	13565	chr4:169392898:-	PITPNC1	69838	chr17:65628259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	DDX60L->DEAD-box_helicase_60-like,chr4:169277886-169458937:-,PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGD4--XPO6	2	0	FGD4	9074	chr12:32717223:+	XPO6	51826	chr16:28164106:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,XPO6->chr16:28109300-28223241:-,exportin_6	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPCPD1--YWHAB	2	0	GPCPD1	1185	chr20:5591488:-	YWHAB	31636	chr20:43530172:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GPCPD1->chr20:5525085-5591672:-,glycerophosphocholine_phosphodiesterase_1,YWHAB->chr20:43514317-43537173:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_beta	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHL9--KBTBD2	2	0	KLHL9	1284	chr9:21335096:-	KBTBD2	13765	chr7:32919554:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	HGNC_GENEFAM,PROTCLUST,KLHL9->chr9:21329670-21335379:-,kelch_like_family_member_9,KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00926--DHRS9	2	0	LINC00926	1560	chr15:57593122:+	DHRS9	18398	chr2:169939839:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LINC00926->chr15:57592563-57599959:+,long_intergenic_non-protein_coding_RNA_926,DHRS9->chr2:169921299-169952677:+,dehydrogenase/reductase_(SDR_family)_member_9	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT1--RNF130	2	0	MGAT1	5998	chr5:180230602:-	RNF130	16611	chr5:179467647:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	MGAT1->chr5:180217541-180242652:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,2-N-acetylglucosaminyltransferase,RNF130->chr5:179338651-179499118:-,ring_finger_protein_130	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NAA40--RNF214	2	0	NAA40	2672	chr11:63713407:+	RNF214	16258	chr11:117110517:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NAA40->N(alpha)-acetyltransferase_40,_NatD_catalytic_subunit,chr11:63706431-63724800:+,RNF214->chr11:117103341-117157161:+,ring_finger_protein_214	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIKFYVE--LYST	2	0	PIKFYVE	13574	chr2:209169737:+	LYST	107036	chr1:235875497:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PIKFYVE->chr2:209130991-209223475:+,phosphoinositide_kinase,_FYVE-type_zinc_finger_containing,LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPN23--SMARCC1	2	0	PTPN23	1170	chr3:47422670:+	SMARCC1	16614	chr3:47814426:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23,SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	2	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC35F2--MRPL33	2	0	SLC35F2	12088	chr11:107673727:-	MRPL33	21145	chr2:28002300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	SLC35F2->chr11:107661717-107799019:-,solute_carrier_family_35_member_F2,MRPL33->chr2:27994584-28210954:+,mitochondrial_ribosomal_protein_L33	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D5--ATG3	2	0	TBC1D5	38765	chr3:17299998:-	ATG3	57962	chr3:112269109:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,ATG3->autophagy_related_3,chr3:112251356-112280893:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNFAIP8--AP3S1	2	0	TNFAIP8	6599	chr5:118691816:+	AP3S1	21733	chr5:115202367:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XPO6--PRIMPOL	2	0	XPO6	12211	chr16:28167267:-	PRIMPOL	46906	chr4:185603402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	XPO6->chr16:28109300-28223241:-,exportin_6,PRIMPOL->chr4:185570767-185616117:+,primase_and_DNA_directed_polymerase	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
NCIH1436_LUNG	LMO7--MPRIP	18	11	LMO7	10788	chr13:76335174:+	MPRIP	93391	chr17:17104772:+	ONLY_REF_SPLICE	YES	64	0	0.31	1	0.2487	0.152	LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+,MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein	NCIH1436_LUNG	0.31	1	0.4007	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	LINC00693--RP11-349A22.5	16	10	LINC00693	5957	chr3:28799344:+	RP11-349A22.5	24732	chr14:58732262:-	INCL_NON_REF_SPLICE	YES	0	19	1	0.58	0.2211	0.1382	LINC00693->chr3:28616282-28799831:+,long_intergenic_non-protein_coding_RNA_693,RP11-349A22.5->chr14:58732083-58764852:-	NCIH1436_LUNG	0.58	1	0.3593	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	PPARGC1A--POLN	15	5	PPARGC1A	4638	chr4:23886375:-	POLN	38179	chr4:2214853:-	ONLY_REF_SPLICE	YES	7	0	0.74	1	0.2072	0.0691	PPARGC1A->PPARG_coactivator_1_alpha,chr4:23756664-23905712:-,POLN->chr4:2073645-2243848:-,polymerase_(DNA)_nu	NCIH1436_LUNG	0.74	1	0.2763	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	GTF2H5--TULP4	14	1	GTF2H5	2113	chr6:158591570:+	TULP4	20698	chr6:158882595:+	ONLY_REF_SPLICE	YES	5	17	0.75	0.47	0.1934	0.0138	GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5,TULP4->chr6:158733692-158932860:+,tubby_like_protein_4	NCIH1436_LUNG	0.47	0.75	0.2072	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	LMO7--MPRIP	3	5	LMO7	10788	chr13:76335174:+	MPRIP	94567	chr17:17120804:+	ONLY_REF_SPLICE	YES	64	1	0.11	0.89	0.0414	0.0691	LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+,MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein	NCIH1436_LUNG	0.11	0.89	0.1105	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	NTM--COTL1	4	0	NTM	4884	chr11:131530922:+	COTL1	38649	chr16:84600328:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0553	0	NTM->chr11:131240373-132206716:+,neurotrimin,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	NCIH1436_LUNG	1	1	0.0553	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	VWDE--PHF14	4	0	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0553	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1436_LUNG	1	1	0.0553	TRUE	0	6	0	17	2	TRUE	ACH-000830
NCIH1436_LUNG	AP000769.1--SF1	3	0	AP000769.1	1075	chr11:65222802:+	SF1	7959	chr11:64544098:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0414	0	AP000769.1->chr11:65222728-65234028:+,SF1->chr11:64532078-64546258:-,splicing_factor_1	NCIH1436_LUNG	1	1	0.0414	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	AC087294.2--SON	2	0	AC087294.2	1120	chr17:21117763:+	SON	20889	chr21:34931536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	AC087294.2->chr17:21117644-21133348:+,SON->SON_DNA_binding_protein,chr21:34914924-34949812:+	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	CRHR1--LBR	2	0	CRHR1	2396	chr17:43707524:+	LBR	30128	chr1:225598118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	CRHR1->chr17:43699267-43913194:+,corticotropin_releasing_hormone_receptor_1,LBR->chr1:225589204-225616627:-,lamin_B_receptor	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	DLX6-AS1--RHEB	2	0	DLX6-AS1	1141	chr7:96643237:-	RHEB	28956	chr7:151188100:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-,RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	HUWE1--ANGEL2	2	0	HUWE1	23976	chrX:53634484:-	ANGEL2	84062	chr1:213181808:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,ANGEL2->angel_homolog_2_(Drosophila),chr1:213165524-213189168:-	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	MCM3--DDX17	2	0	MCM3	3647	chr6:52146843:-	DDX17	23008	chr22:38897285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	MCM3->chr6:52128807-52149679:-,minichromosome_maintenance_complex_component_3,DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	MEA1--LMBR1	2	0	MEA1	2043	chr6:42980664:-	LMBR1	34700	chr7:156472000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	MEA1->chr6:42979832-42981706:-,male-enhanced_antigen_1,LMBR1->chr7:156461646-156685924:-,limb_development_membrane_protein_1	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	MMP26--LUC7L	2	0	MMP26	1119	chr11:4726275:+	LUC7L	16601	chr16:258187:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	MMP26->chr11:4726157-5013659:+,matrix_metallopeptidase_26,LUC7L->LUC7_like,chr16:238968-279462:-	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	SLC25A32--YWHAZ	2	0	SLC25A32	1406	chr8:104427012:-	YWHAZ	20405	chr8:101937267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	U2AF1--PTBP1	2	0	U2AF1	1137	chr21:44527561:-	PTBP1	22504	chr19:805492:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	HGNC_GENEFAM,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	UTP14A--SMARCA1	2	0	UTP14A	4627	chrX:129045126:+	SMARCA1	22513	chrX:128645960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	UTP14A->UTP14A_small_subunit_processome_component,chrX:129040097-129063737:+,SMARCA1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_1,chrX:128580480-128657477:-	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
RKO_LARGE_INTESTINE	RP11-421F16.3--SUMO3	27	0	RP11-421F16.3	1829	chr12:27125347:+	SUMO3	11565	chr21:46228445:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3851	0	RP11-421F16.3->chr12:27124519-27132515:+,SUMO3->chr21:46225532-46238694:-,small_ubiquitin-like_modifier_3	RKO_LARGE_INTESTINE	1	1	0.3851	TRUE	0	0	0	3	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	AGAP4--MSRB3	8	4	AGAP4	6720	chr10:46337101:-	MSRB3	23766	chr12:65762778:+	ONLY_REF_SPLICE	YES	111	1	0.1	0.92	0.1141	0.057	AGAP4->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_4,chr10:46321042-46349323:-,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	RKO_LARGE_INTESTINE	0.1	0.92	0.1711	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	C1orf159--SDF4	5	0	C1orf159	1302	chr1:1051440:-	SDF4	25211	chr1:1154323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0713	0	C1orf159->chr1:1017198-1051741:-,chromosome_1_open_reading_frame_159,SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4	RKO_LARGE_INTESTINE	1	1	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	C17orf76-AS1--IFT74	4	0	C17orf76-AS1	1593	chr17:16342728:+	IFT74	32311	chr9:27044740:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	C17orf76-AS1->chr17:16342136-16381992:+,IFT74->chr9:26947037-27062928:+,intraflagellar_transport_74	RKO_LARGE_INTESTINE	1	1	0.057	TRUE	0	1	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	ANO6--XPO1	2	0	ANO6	5906	chr12:45695876:+	XPO1	40354	chr2:61761038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	ANO6->anoctamin_6,chr12:45609770-45834187:+,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	C17orf62--EEF1D	2	0	C17orf62	1130	chr17:80408576:-	EEF1D	23368	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	C17orf76-AS1--MKI67	2	0	C17orf76-AS1	1593	chr17:16342728:+	MKI67	16302	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	C17orf76-AS1->chr17:16342136-16381992:+,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	2	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	CASC3--ZNF282	2	0	CASC3	2290	chr17:38297860:+	ZNF282	17842	chr7:148903788:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+,ZNF282->chr7:148892577-148923339:+,zinc_finger_protein_282	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	12	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	FRMD6--ADAM17	2	0	FRMD6	3591	chr14:52021523:+	ADAM17	36587	chr2:9683414:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	PROCR--NABP2	2	0	PROCR	3683	chr20:33764249:+	NABP2	10035	chr12:56618618:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	PROCR->chr20:33759876-33765165:+,protein_C_receptor,NABP2->chr12:56615799-56623638:+,nucleic_acid_binding_protein_2	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	SH2B1--EZH2	2	0	SH2B1	9365	chr16:28880704:+	EZH2	25971	chr7:148516779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	UPP1--THOC5	2	0	UPP1	2737	chr7:48129961:+	THOC5	23795	chr22:29935465:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	UPP1->chr7:48128225-48148330:+,uridine_phosphorylase_1,THOC5->Oncogene{Bushman},THO_complex_5,chr22:29901868-29951205:-	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
LS1034_LARGE_INTESTINE	ADAP1--PRKAR1B	787	403	ADAP1	9672	chr7:959605:-	PRKAR1B	30892	chr7:647089:-	ONLY_REF_SPLICE	YES	160	45	0.88	0.96	10.448	5.3501	{Klijn_CCL:Colo-Rectal=1},ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	LS1034_LARGE_INTESTINE	0.88	0.96	15.7981	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	ADAP1--PRKAR1B	55	401	ADAP1	9668	chr7:959609:-	PRKAR1B	30892	chr7:647089:-	INCL_NON_REF_SPLICE	YES	156	45	0.75	0.91	0.7302	5.3235	{Klijn_CCL:Colo-Rectal=1},ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	LS1034_LARGE_INTESTINE	0.75	0.91	6.0537	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	NOL9--ACOT7	44	12	NOL9	3474	chr1:6609631:-	ACOT7	36658	chr1:6341346:-	ONLY_REF_SPLICE	YES	3	75	0.95	0.43	0.5841	0.1593	{Klijn_CCL:Colo-Rectal=1},NOL9->chr1:6581407-6614595:-,nucleolar_protein_9,ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	LS1034_LARGE_INTESTINE	0.43	0.95	0.7434	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	ADAP1--PRKAR1B	8	133	ADAP1	9672	chr7:959605:-	PRKAR1B	34132	chr7:635941:-	ONLY_REF_SPLICE	YES	160	79	0.47	0.64	0.1062	1.7657	{Klijn_CCL:Colo-Rectal=1},ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	LS1034_LARGE_INTESTINE	0.47	0.64	1.8719	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	RP11-661P17.1--SLCO3A1	20	2	RP11-661P17.1	3525	chr15:92016546:+	SLCO3A1	15689	chr15:92459223:+	ONLY_REF_SPLICE	YES	0	6	1	0.79	0.2655	0.0266	GTEx_FI:{Pancreas=[count:3=pct:1.7]},RP11-661P17.1->chr15:91951938-92148441:+,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	LS1034_LARGE_INTESTINE	0.79	1	0.2921	TRUE	1	11	1	4	10	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	GRHL2--MAP2K2	6	5	GRHL2	4316	chr8:102565010:+	MAP2K2	25908	chr19:4117627:-	ONLY_REF_SPLICE	YES	15	51	0.42	0.18	0.0797	0.0664	{Klijn_CCL:Colo-Rectal=1},GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2,MAP2K2->ArcherDX_panel,FoundationOne_panel,chr19:4090319-4124126:-,mitogen-activated_protein_kinase_kinase_2	LS1034_LARGE_INTESTINE	0.18	0.42	0.1461	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	ADAP1--PRKAR1B	2	15	ADAP1	6388	chr7:966189:-	PRKAR1B	30892	chr7:647089:-	ONLY_REF_SPLICE	YES	83	45	0.17	0.27	0.0266	0.1991	{Klijn_CCL:Colo-Rectal=1},ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	LS1034_LARGE_INTESTINE	0.17	0.27	0.2257	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	EPHX2--MYO6	2	0	EPHX2	21030	chr8:27401761:+	MYO6	57288	chr6:76617322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	EPHX2->chr8:27348296-27403081:+,epoxide_hydrolase_2,MYO6->chr6:76458909-76629254:+,myosin_VI	LS1034_LARGE_INTESTINE	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	PKP4--NCK2	2	0	PKP4	8477	chr2:159459616:+	NCK2	39017	chr2:106471504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	PKP4->chr2:159313476-159539391:+,plakophilin_4,NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+	LS1034_LARGE_INTESTINE	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	RP11-281P23.1--RP11-281P23.2	1	1	RP11-281P23.1	1582	chr4:11471455:+	RP11-281P23.2	13426	chr4:11771933:+	ONLY_REF_SPLICE	YES	4	1	0.33	0.67	0.0133	0.0133	RP11-281P23.1->chr4:11470874-11479820:+,RP11-281P23.2->chr4:11627338-11815582:+	LS1034_LARGE_INTESTINE	0.33	0.67	0.0266	TRUE	0	1	1	4	1	TRUE	ACH-000252
ISTMES1_PLEURA	TADA2B--TBC1D14	49	42	TADA2B	2647	chr4:7045576:+	TBC1D14	19304	chr4:6995911:+	ONLY_REF_SPLICE	YES	64	51	0.59	0.64	0.6359	0.545	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[8781],TADA2B->chr4:7043626-7059679:+,transcriptional_adaptor_2B,TBC1D14->TBC1_domain_family_member_14,chr4:6910969-7034845:+	ISTMES1_PLEURA	0.59	0.64	1.1809	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	RAB30--GRM5	46	32	RAB30	1233	chr11:82782733:-	GRM5	38034	chr11:88301160:-	ONLY_REF_SPLICE	YES	21	0	0.79	1	0.5969	0.4153	RAB30->RAB30,_member_RAS_oncogene_family,chr11:82684175-82782965:-,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	ISTMES1_PLEURA	0.79	1	1.0122	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	SYNE2--ESR2	40	32	SYNE2	31483	chr14:64467437:+	ESR2	163054	chr14:64551770:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5191	0.4153	SYNE2->Oncogene{Bushman},chr14:64319683-64693165:+,spectrin_repeat_containing_nuclear_envelope_protein_2,ESR2->Oncogene{Bushman},chr14:64550950-64804830:-,estrogen_receptor_2	ISTMES1_PLEURA	1	1	0.9344	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	USP45--OPN3	21	12	USP45	13521	chr6:99924019:-	OPN3	39047	chr1:241761299:-	ONLY_REF_SPLICE	YES	17	28	0.66	0.54	0.2725	0.1557	USP45->chr6:99880190-99969604:-,ubiquitin_specific_peptidase_45,OPN3->chr1:241753404-241840678:-,opsin_3	ISTMES1_PLEURA	0.54	0.66	0.4282	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	NF2--RP11-496I2.7	10	30	NF2	13651	chr22:30069475:+	RP11-496I2.7	27051	chr14:19787439:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1298	0.3893	NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin),RP11-496I2.7->chr14:19787427-19787943:+	ISTMES1_PLEURA	1	1	0.5191	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	FOCAD--MTAP	15	8	FOCAD	7198	chr9:20720533:+	MTAP	67071	chr9:21815432:+	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1947	0.1038	FOCAD->chr9:20658308-20995954:+,focadhesin,MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase	ISTMES1_PLEURA	0.96	1	0.2985	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	SUCLG2--CX3CR1	12	16	SUCLG2	2254	chr3:67659879:-	CX3CR1	21737	chr3:39308009:-	ONLY_REF_SPLICE	YES	218	0	0.11	1	0.1557	0.2076	SUCLG2->chr3:67410884-67705038:-,succinate-CoA_ligase_GDP-forming_beta_subunit,CX3CR1->C-X3-C_motif_chemokine_receptor_1,chr3:39304985-39323226:-	ISTMES1_PLEURA	0.11	1	0.3633	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	RAB30--GRM5	3	33	RAB30	2335	chr11:82771119:-	GRM5	38034	chr11:88301160:-	ONLY_REF_SPLICE	YES	23	0	0.61	1	0.0389	0.4282	RAB30->RAB30,_member_RAS_oncogene_family,chr11:82684175-82782965:-,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	ISTMES1_PLEURA	0.61	1	0.4671	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	MTAP--RP11-408N14.1	9	2	MTAP	7556	chr9:21818201:+	RP11-408N14.1	25559	chr9:22204058:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.1168	0.026	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-408N14.1->chr9:22203989-22214671:-	ISTMES1_PLEURA	0.92	1	0.1428	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	FOCAD--MTAP	5	9	FOCAD	7198	chr9:20720533:+	MTAP	64756	chr9:21808806:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0649	0.1168	FOCAD->chr9:20658308-20995954:+,focadhesin,MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase	ISTMES1_PLEURA	0.93	1	0.1817	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	ZNF133--RP4-568F9.6	5	4	ZNF133	4994	chr20:18287037:+	RP4-568F9.6	15984	chr20:18328186:-	ONLY_REF_SPLICE	YES	7	0	0.56	1	0.0649	0.0519	LOCAL_INVERSION:+:-:[5556],ZNF133->chr20:18269121-18297640:+,zinc_finger_protein_133,RP4-568F9.6->chr20:18303196-18339944:-	ISTMES1_PLEURA	0.56	1	0.1168	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	CNN3--TUBB	5	0	CNN3	9144	chr1:95363383:-	TUBB	16343	chr6:30691310:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	CNN3->calponin_3,chr1:95362507-95392834:-,TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	ISTMES1_PLEURA	1	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	CTB-113P19.1--FTL	3	4	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	4	0	0.64	1	0.0389	0.0519	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	ISTMES1_PLEURA	0.64	1	0.0908	TRUE	0	2	0	13	2	TRUE	ACH-000569
ISTMES1_PLEURA	RP3-400B16.4--LAMC2	3	2	RP3-400B16.4	1123	chr6:4135779:+	LAMC2	23315	chr1:183206487:+	ONLY_REF_SPLICE	YES	0	24	1	0.17	0.0389	0.026	RP3-400B16.4->chr6:4135657-4146287:+,LAMC2->chr1:183155373-183214035:+,laminin_subunit_gamma_2	ISTMES1_PLEURA	0.17	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	RP3-400B16.4--LAMC2	2	3	RP3-400B16.4	1123	chr6:4135779:+	LAMC2	22423	chr1:183205595:+	ONLY_REF_SPLICE	NO	0	14	1	0.26	0.026	0.0389	RP3-400B16.4->chr6:4135657-4146287:+,LAMC2->chr1:183155373-183214035:+,laminin_subunit_gamma_2	ISTMES1_PLEURA	0.26	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	RP4-568F9.6--LINC00851	2	1	RP4-568F9.6	7120	chr20:18304288:-	LINC00851	12241	chr20:18361423:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.026	0.013	LOCAL_INVERSION:-:+:[19749],RP4-568F9.6->chr20:18303196-18339944:-,LINC00851->chr20:18359693-18362128:+,long_intergenic_non-protein_coding_RNA_851	ISTMES1_PLEURA	0.75	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	CPSF6--ZBTB21	2	0	CPSF6	11046	chr12:69656342:+	ZBTB21	26884	chr21:43411998:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,ZBTB21->chr21:43406940-43430496:-,zinc_finger_and_BTB_domain_containing_21	ISTMES1_PLEURA	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	EZR--C6orf99	2	0	EZR	2248	chr6:159239114:-	C6orf99	20886	chr6:159316253:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_INVERSION:-:+:[50527],EZR->chr6:159186773-159240444:-,ezrin,C6orf99->chr6:159290971-159331385:+,chromosome_6_open_reading_frame_99	ISTMES1_PLEURA	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	RFC5--UBR7	2	0	RFC5	2277	chr12:118454697:+	UBR7	24819	chr14:93685558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RFC5->chr12:118451393-118470935:+,replication_factor_C_subunit_5,UBR7->chr14:93673401-93695561:+,ubiquitin_protein_ligase_E3_component_n-recognin_7_(putative)	ISTMES1_PLEURA	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	RPL30--ZBTB18	2	0	RPL30	2527	chr8:99057171:-	ZBTB18	11802	chr1:244217090:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,ZBTB18->chr1:244214585-244220778:+,zinc_finger_and_BTB_domain_containing_18	ISTMES1_PLEURA	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	UBA2--UQCRC1	2	0	UBA2	1219	chr19:34919475:+	UQCRC1	25991	chr3:48643289:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2,UQCRC1->chr3:48636435-48648409:-,ubiquinol-cytochrome_c_reductase_core_protein_I	ISTMES1_PLEURA	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	PRKD1--CTD-2251F13.1	1	2	PRKD1	1600	chr14:30660505:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.013	0.026	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	ISTMES1_PLEURA	1	1	0.039	TRUE	0	1	0	5	1	TRUE	ACH-000569
TM87_SOFT_TISSUE	SESN3--MAML2	26	21	SESN3	8358	chr11:94922943:-	MAML2	29589	chr11:95826681:-	ONLY_REF_SPLICE	YES	255	37	0.16	0.56	0.2987	0.2413	SESN3->chr11:94898704-94965705:-,sestrin_3,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	TM87_SOFT_TISSUE	0.16	0.56	0.54	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	TMSB10--SHC1	24	0	TMSB10	1865	chr2:85133613:+	SHC1	11279	chr1:154938943:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2757	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,SHC1->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_transforming_protein_1,chr1:154934774-154946871:-	TM87_SOFT_TISSUE	1	1	0.2757	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	KIF26B--SMYD3	7	0	KIF26B	2699	chr1:245319985:+	SMYD3	55692	chr1:246093239:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0804	0	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	TM87_SOFT_TISSUE	1	1	0.0804	TRUE	0	18	0	6	12	TRUE	ACH-000172
TM87_SOFT_TISSUE	DLGAP1-AS1--RP13-270P17.2	2	2	DLGAP1-AS1	1753	chr18:3594482:+	RP13-270P17.2	10880	chr18:3236439:+	ONLY_REF_SPLICE	YES	43	1	0.09	0.8	0.023	0.023	DLGAP1-AS1->DLGAP1_antisense_RNA_1,chr18:3593730-3598350:+,RP13-270P17.2->chr18:3190395-3247275:+	TM87_SOFT_TISSUE	0.09	0.8	0.046	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	CSRNP3--SCN2A	1	5	CSRNP3	3353	chr2:166374471:+	SCN2A	27910	chr2:166152283:+	ONLY_REF_SPLICE	YES	3	75	0.67	0.07	0.0115	0.0574	LOCAL_REARRANGEMENT:+:[77339],CSRNP3->chr2:166326157-166545917:+,cysteine_and_serine_rich_nuclear_protein_3,SCN2A->chr2:166095912-166248818:+,sodium_voltage-gated_channel_alpha_subunit_2	TM87_SOFT_TISSUE	0.07	0.67	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	APOD--ULK2	2	0	APOD	4868	chr3:195303933:-	ULK2	23855	chr17:19741896:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	APOD->apolipoprotein_D,chr3:195295573-195311076:-,ULK2->chr17:19674142-19771249:-,unc-51_like_autophagy_activating_kinase_2	TM87_SOFT_TISSUE	1	1	0.023	TRUE	0	4	0	1	3	TRUE	ACH-000172
TM87_SOFT_TISSUE	DLGAP1-AS1--RP13-270P17.2	2	0	DLGAP1-AS1	1509	chr18:3594238:+	RP13-270P17.2	10880	chr18:3236439:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	DLGAP1-AS1->DLGAP1_antisense_RNA_1,chr18:3593730-3598350:+,RP13-270P17.2->chr18:3190395-3247275:+	TM87_SOFT_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	KIF26B--SMYD3	2	0	KIF26B	2699	chr1:245319985:+	SMYD3	57863	chr1:246078942:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	TM87_SOFT_TISSUE	1	1	0.023	TRUE	0	1	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	LETMD1--SPINK13	2	0	LETMD1	2224	chr12:51442968:+	SPINK13	17085	chr5:147653910:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	LETMD1->LETM1_domain_containing_1,chr12:51441745-51454207:+,SPINK13->chr5:147647743-147665817:+,serine_peptidase_inhibitor,_Kazal_type_13_(putative)	TM87_SOFT_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	PJA2--FGF20	2	0	PJA2	1153	chr5:108745543:-	FGF20	21680	chr8:16850826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	PJA2->chr5:108670410-108745695:-,praja_ring_finger_ubiquitin_ligase_2,FGF20->chr8:16849678-16859690:-,fibroblast_growth_factor_20	TM87_SOFT_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	DLGAP1-AS1--RP13-270P17.2	1	2	DLGAP1-AS1	2850	chr18:3596673:+	RP13-270P17.2	10880	chr18:3236439:+	ONLY_REF_SPLICE	YES	57	1	0.05	0.75	0.0115	0.023	DLGAP1-AS1->DLGAP1_antisense_RNA_1,chr18:3593730-3598350:+,RP13-270P17.2->chr18:3190395-3247275:+	TM87_SOFT_TISSUE	0.05	0.75	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000172
HCC1569_BREAST	BOP1--LMF1	734	132	BOP1	4671	chr8:145500212:-	LMF1	27943	chr16:929737:-	ONLY_REF_SPLICE	YES	331	34	0.72	0.96	7.7934	1.4015	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,LMF1->Oncogene{Bushman},chr16:903634-1031318:-,lipase_maturation_factor_1	HCC1569_BREAST	0.72	0.96	9.1949	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PSD3--CSGALNACT1	341	39	PSD3	3423	chr8:18871073:-	CSGALNACT1	65438	chr8:19276261:-	ONLY_REF_SPLICE	YES	2	2	0.99	0.99	3.6206	0.4141	{Klijn_CCL:Breast=1},PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-	HCC1569_BREAST	0.99	0.99	4.0347	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	276	195	PVT1	1202	chr8:128806980:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	140	14	0.77	0.97	2.9305	2.0705	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.77	0.97	5.001	TRUE	0	2	0	5	2	TRUE	ACH-000930
HCC1569_BREAST	TMEM189--GMDS	175	46	TMEM189	3506	chr20:48760039:-	GMDS	35335	chr6:1624775:-	ONLY_REF_SPLICE	YES	182	68	0.55	0.76	1.8581	0.4884	TMEM189->chr20:48697663-48770335:-,transmembrane_protein_189,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	HCC1569_BREAST	0.55	0.76	2.3465	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	120	237	PVT1	1202	chr8:128806980:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	140	0	0.72	1	1.2741	2.5164	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.72	1	3.7905	TRUE	0	0	0	5	0	TRUE	ACH-000930
HCC1569_BREAST	AP5B1--CASC8	163	30	AP5B1	1361	chr11:65547913:-	CASC8	17025	chr8:128302305:-	ONLY_REF_SPLICE	YES	18	14	0.91	0.93	1.7307	0.3185	AP5B1->adaptor_related_protein_complex_5_beta_1_subunit,chr11:65543364-65548273:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.91	0.93	2.0492	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	LIMCH1--UCHL1	138	60	LIMCH1	7853	chr4:41526495:+	UCHL1	52640	chr4:41258610:+	ONLY_REF_SPLICE	YES	41	0	0.83	1	1.4652	0.6371	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[91152],LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1	HCC1569_BREAST	0.83	1	2.1023	TRUE	0	2	0	1	2	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	56	207	PVT1	2457	chr8:128808254:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	117	14	0.69	0.95	0.5946	2.1979	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.69	0.95	2.7925	TRUE	0	1	0	4	0	TRUE	ACH-000930
HCC1569_BREAST	BAG4--ASH2L	78	31	BAG4	2715	chr8:38050313:+	ASH2L	15185	chr8:37967897:+	ONLY_REF_SPLICE	YES	47	153	0.7	0.42	0.8282	0.3291	LOCAL_REARRANGEMENT:+:[32457],BAG4->BCL2_associated_athanogene_4,chr8:38034051-38070819:+,ASH2L->ash2_(absent,_small,_or_homeotic)-like_(Drosophila),chr8:37962760-38001594:+	HCC1569_BREAST	0.42	0.7	1.1573	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	AP003900.6--CRBN	70	14	AP003900.6	1122	chr21:11169841:+	CRBN	9018	chr3:3216953:-	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.7432	0.1486	AP003900.6->chr21:11169720-11184046:+,CRBN->cereblon,chr3:3190676-3221394:-	HCC1569_BREAST	0.99	1	0.8918	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	8	252	PVT1	2457	chr8:128808254:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	117	0	0.69	1	0.0849	2.6757	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.69	1	2.7606	TRUE	0	0	0	2	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	2	256	PVT1	2520	chr8:128808317:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	119	0	0.68	1	0.0212	2.7181	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.68	1	2.7393	TRUE	0	0	0	2	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	1	256	PVT1	6412	chr8:128867041:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	116	0	0.69	1	0.0106	2.7181	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.69	1	2.7287	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	11	211	PVT1	2520	chr8:128808317:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	119	14	0.65	0.94	0.1168	2.2403	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.65	0.94	2.3571	TRUE	0	1	0	4	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	3	211	PVT1	6936	chr8:128867565:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	114	14	0.65	0.94	0.0319	2.2403	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.65	0.94	2.2722	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PSD3--CSGALNACT1	46	20	PSD3	3423	chr8:18871073:-	CSGALNACT1	66533	chr8:19266205:-	ONLY_REF_SPLICE	YES	2	32	0.97	0.67	0.4884	0.2124	{Klijn_CCL:Breast=1},PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-	HCC1569_BREAST	0.67	0.97	0.7008	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	SIPA1L3--TFCP2	42	20	SIPA1L3	1131	chr19:38397998:+	TFCP2	41142	chr12:51512555:-	ONLY_REF_SPLICE	YES	8	41	0.89	0.6	0.4459	0.2124	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,TFCP2->chr12:51487446-51566926:-,transcription_factor_CP2	HCC1569_BREAST	0.6	0.89	0.6583	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	DPY19L4--IL1RN	41	4	DPY19L4	18815	chr8:95796030:+	IL1RN	29238	chr2:113868693:+	ONLY_REF_SPLICE	YES	59	0	0.43	1	0.4353	0.0425	DPY19L4->chr8:95731931-95806064:+,dpy-19_like_4_(C._elegans),IL1RN->chr2:113864791-113891593:+,interleukin_1_receptor_antagonist	HCC1569_BREAST	0.43	1	0.4778	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	BAG4--ASH2L	35	13	BAG4	1607	chr8:38034657:+	ASH2L	15185	chr8:37967897:+	ONLY_REF_SPLICE	YES	51	153	0.48	0.24	0.3716	0.138	LOCAL_REARRANGEMENT:+:[32457],BAG4->BCL2_associated_athanogene_4,chr8:38034051-38070819:+,ASH2L->ash2_(absent,_small,_or_homeotic)-like_(Drosophila),chr8:37962760-38001594:+	HCC1569_BREAST	0.24	0.48	0.5096	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	TCHP--UBR4	38	1	TCHP	10436	chr12:110350877:+	UBR4	39986	chr1:19505714:-	ONLY_REF_SPLICE	YES	33	20	0.54	0.66	0.4035	0.0106	TCHP->chr12:110338069-110421646:+,trichoplein_keratin_filament_binding,UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4	HCC1569_BREAST	0.54	0.66	0.4141	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	ENG--RPL29	37	4	ENG	2620	chr9:130605373:-	RPL29	17049	chr3:52029485:-	ONLY_REF_SPLICE	YES	66	22	0.38	0.65	0.3929	0.0425	ENG->chr9:130577291-130617035:-,endoglin,RPL29->chr3:52027616-52029958:-,ribosomal_protein_L29	HCC1569_BREAST	0.38	0.65	0.4354	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	GPX4--CNN2	35	12	GPX4	3523	chr19:1106458:+	CNN2	8757	chr19:1031070:+	ONLY_REF_SPLICE	YES	440	31	0.1	0.6	0.3716	0.1274	LOCAL_REARRANGEMENT:+:[64868],GPX4->chr19:1103936-1106787:+,glutathione_peroxidase_4,CNN2->calponin_2,chr19:1026298-1039068:+	HCC1569_BREAST	0.1	0.6	0.499	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PPFIA1--ANO1	33	10	PPFIA1	34543	chr11:70218680:+	ANO1	44896	chr11:69924648:+	INCL_NON_REF_SPLICE	YES	66	0	0.39	1	0.3504	0.1062	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	HCC1569_BREAST	0.39	1	0.4566	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	URI1--ZFP42	32	2	URI1	5244	chr19:30433571:+	ZFP42	26746	chr4:188920763:+	ONLY_REF_SPLICE	YES	249	0	0.12	1	0.3398	0.0212	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,ZFP42->ZFP42_zinc_finger_protein,chr4:188916925-188926204:+	HCC1569_BREAST	0.12	1	0.361	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	BTG3--C21orf91	29	10	BTG3	7133	chr21:18970935:-	C21orf91	18186	chr21:19167587:-	ONLY_REF_SPLICE	YES	190	24	0.17	0.62	0.3079	0.1062	BTG3->BTG_family_member_3,chr21:18965971-18985265:-,C21orf91->chr21:19161284-19191703:-,chromosome_21_open_reading_frame_91	HCC1569_BREAST	0.17	0.62	0.4141	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	JDP2--ZC2HC1C	29	10	JDP2	4318	chr14:75904824:+	ZC2HC1C	21498	chr14:75544235:+	ONLY_REF_SPLICE	YES	41	2	0.49	0.95	0.3079	0.1062	JDP2->Jun_dimerization_protein_2,Oncogene{Bushman},chr14:75894419-75940814:+,ZC2HC1C->chr14:75530873-75545126:+,zinc_finger_C2HC-type_containing_1C	HCC1569_BREAST	0.49	0.95	0.4141	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	AP5B1--CASC8	15	33	AP5B1	1361	chr11:65547913:-	CASC8	15885	chr8:128335399:-	ONLY_REF_SPLICE	YES	18	0	0.73	1	0.1593	0.3504	AP5B1->adaptor_related_protein_complex_5_beta_1_subunit,chr11:65543364-65548273:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.73	1	0.5097	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	FNIP2--RXFP1	18	5	FNIP2	20031	chr4:159791621:+	RXFP1	57373	chr4:159572909:+	ONLY_REF_SPLICE	YES	13	0	0.64	1	0.1911	0.0531	FNIP2->chr4:159690290-159829201:+,folliculin_interacting_protein_2,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	HCC1569_BREAST	0.64	1	0.2442	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	ING1--COL4A2	16	10	ING1	2550	chr13:111366632:+	COL4A2	15370	chr13:111077081:+	ONLY_REF_SPLICE	YES	28	22	0.48	0.54	0.1699	0.1062	ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HCC1569_BREAST	0.48	0.54	0.2761	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	ENG--RPL29	16	4	ENG	2620	chr9:130605373:-	RPL29	16616	chr3:52029918:-	INCL_NON_REF_SPLICE	YES	66	0	0.23	1	0.1699	0.0425	ENG->chr9:130577291-130617035:-,endoglin,RPL29->chr3:52027616-52029958:-,ribosomal_protein_L29	HCC1569_BREAST	0.23	1	0.2124	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	TRAPPC9--VSTM4	14	2	TRAPPC9	24393	chr8:141231558:-	VSTM4	78359	chr10:50227820:-	ONLY_REF_SPLICE	YES	15	0	0.52	1	0.1486	0.0212	{Klijn_CCL:Breast=1},TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,VSTM4->V-set_and_transmembrane_domain_containing_4,chr10:50222290-50323554:-	HCC1569_BREAST	0.52	1	0.1698	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	BOP1--LMF1	1	50	BOP1	2339	chr8:145512776:-	LMF1	27943	chr16:929737:-	ONLY_REF_SPLICE	YES	268	34	0.16	0.6	0.0106	0.5309	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,LMF1->Oncogene{Bushman},chr16:903634-1031318:-,lipase_maturation_factor_1	HCC1569_BREAST	0.16	0.6	0.5415	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	SEPT9--AMBN	13	2	SEPT9	23883	chr17:75447610:+	AMBN	46301	chr4:71458034:+	INCL_NON_REF_SPLICE	YES	347	0	0.04	1	0.138	0.0212	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,AMBN->ameloblastin,chr4:71457973-71473005:+	HCC1569_BREAST	0.04	1	0.1592	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	TOMM34--MATN4	11	9	TOMM34	7419	chr20:43571653:-	MATN4	19108	chr20:43922655:-	INCL_NON_REF_SPLICE	YES	192	2	0.09	0.91	0.1168	0.0956	TOMM34->chr20:43570771-43589127:-,translocase_of_outer_mitochondrial_membrane_34,MATN4->chr20:43922085-43937169:-,matrilin_4	HCC1569_BREAST	0.09	0.91	0.2124	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	AP003900.6--CRBN	9	13	AP003900.6	1122	chr21:11169841:+	CRBN	9021	chr3:3216950:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.0956	0.138	AP003900.6->chr21:11169720-11184046:+,CRBN->cereblon,chr3:3190676-3221394:-	HCC1569_BREAST	0.96	1	0.2336	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	FAM207A--ITGB2	10	3	FAM207A	2331	chr21:46363752:+	ITGB2	17877	chr21:46330700:-	ONLY_REF_SPLICE	YES	110	6	0.11	0.68	0.1062	0.0319	LOCAL_INVERSION:+:-:[8021],FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A,ITGB2->chr21:46305868-46351904:-,integrin_subunit_beta_2	HCC1569_BREAST	0.11	0.68	0.1381	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	SIPA1L3--TFCP2	4	22	SIPA1L3	3094	chr19:38423332:+	TFCP2	41142	chr12:51512555:-	ONLY_REF_SPLICE	YES	9	41	0.74	0.39	0.0425	0.2336	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,TFCP2->chr12:51487446-51566926:-,transcription_factor_CP2	HCC1569_BREAST	0.39	0.74	0.2761	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	TFDP2--XRN1	8	6	TFDP2	13353	chr3:141712380:-	XRN1	38638	chr3:142145683:-	ONLY_REF_SPLICE	YES	68	14	0.17	0.5	0.0849	0.0637	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=3,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1},TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2,XRN1->5'-3'_exoribonuclease_1,chr3:142025449-142166904:-	HCC1569_BREAST	0.17	0.5	0.1486	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	LIMCH1--UCHL1	2	29	LIMCH1	6783	chr4:41496623:+	UCHL1	52640	chr4:41258610:+	ONLY_REF_SPLICE	YES	39	0	0.44	1	0.0212	0.3079	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[91152],LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1	HCC1569_BREAST	0.44	1	0.3291	TRUE	0	1	0	1	1	TRUE	ACH-000930
HCC1569_BREAST	AP003900.6--CRBN	4	15	AP003900.6	2187	chr21:11172043:+	CRBN	9018	chr3:3216953:-	ONLY_REF_SPLICE	YES	2	1	0.9	0.95	0.0425	0.1593	AP003900.6->chr21:11169720-11184046:+,CRBN->cereblon,chr3:3190676-3221394:-	HCC1569_BREAST	0.9	0.95	0.2018	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	AP003900.6--CRBN	3	17	AP003900.6	3299	chr21:11174002:+	CRBN	9018	chr3:3216953:-	ONLY_REF_SPLICE	YES	1	1	0.95	0.95	0.0319	0.1805	AP003900.6->chr21:11169720-11184046:+,CRBN->cereblon,chr3:3190676-3221394:-	HCC1569_BREAST	0.95	0.95	0.2124	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	BOP1--LMF1	1	25	BOP1	4671	chr8:145500212:-	LMF1	31630	chr16:921341:-	ONLY_REF_SPLICE	YES	331	103	0.07	0.2	0.0106	0.2654	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,LMF1->Oncogene{Bushman},chr16:903634-1031318:-,lipase_maturation_factor_1	HCC1569_BREAST	0.07	0.2	0.276	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	BTG3--C21orf91	5	7	BTG3	7133	chr21:18970935:-	C21orf91	19249	chr21:19165898:-	ONLY_REF_SPLICE	YES	190	34	0.06	0.26	0.0531	0.0743	BTG3->BTG_family_member_3,chr21:18965971-18985265:-,C21orf91->chr21:19161284-19191703:-,chromosome_21_open_reading_frame_91	HCC1569_BREAST	0.06	0.26	0.1274	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	DPY19L4--IL1RN	6	1	DPY19L4	17682	chr8:95793394:+	IL1RN	29238	chr2:113868693:+	ONLY_REF_SPLICE	YES	48	0	0.13	1	0.0637	0.0106	DPY19L4->chr8:95731931-95806064:+,dpy-19_like_4_(C._elegans),IL1RN->chr2:113864791-113891593:+,interleukin_1_receptor_antagonist	HCC1569_BREAST	0.13	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	FAM207A--ITGB2	6	1	FAM207A	2286	chr21:46363707:+	ITGB2	17877	chr21:46330700:-	ONLY_REF_SPLICE	YES	87	6	0.07	0.54	0.0637	0.0106	LOCAL_INVERSION:+:-:[8021],FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A,ITGB2->chr21:46305868-46351904:-,integrin_subunit_beta_2	HCC1569_BREAST	0.07	0.54	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--RP11-382A18.2	6	0	PVT1	8346	chr8:128903244:+	RP11-382A18.2	29614	chr8:128404749:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0637	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-382A18.2->chr8:128351519-128404876:+	HCC1569_BREAST	1	1	0.0637	TRUE	0	1	0	1	1	TRUE	ACH-000930
HCC1569_BREAST	TMEM189--GMDS	2	16	TMEM189	1282	chr20:48770054:-	GMDS	35335	chr6:1624775:-	ONLY_REF_SPLICE	YES	180	68	0.09	0.21	0.0212	0.1699	TMEM189->chr20:48697663-48770335:-,transmembrane_protein_189,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	HCC1569_BREAST	0.09	0.21	0.1911	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	GALNT3--AC009495.3	5	3	GALNT3	1668	chr2:166650525:-	AC009495.3	19083	chr2:166693588:-	ONLY_REF_SPLICE	YES	17	0	0.32	1	0.0531	0.0319	LOCAL_REARRANGEMENT:-:[38366],GALNT3->chr2:166604101-166651192:-,polypeptide_N-acetylgalactosaminyltransferase_3,AC009495.3->chr2:166689558-166695608:-	HCC1569_BREAST	0.32	1	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PSD3--CSGALNACT1	4	7	PSD3	3423	chr8:18871073:-	CSGALNACT1	67615	chr8:19263580:-	ONLY_REF_SPLICE	YES	2	78	0.85	0.12	0.0425	0.0743	{Klijn_CCL:Breast=1},PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-	HCC1569_BREAST	0.12	0.85	0.1168	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	TMEM189--GMDS	1	16	TMEM189	2386	chr20:48767749:-	GMDS	35335	chr6:1624775:-	ONLY_REF_SPLICE	YES	215	68	0.07	0.2	0.0106	0.1699	TMEM189->chr20:48697663-48770335:-,transmembrane_protein_189,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	HCC1569_BREAST	0.07	0.2	0.1805	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	AP000350.4--PKM	3	7	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	11	1	0.48	0.0319	0.0743	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	HCC1569_BREAST	0.48	1	0.1062	TRUE	0	0	0	14	0	TRUE	ACH-000930
HCC1569_BREAST	AP003900.6--CRBN	1	15	AP003900.6	3299	chr21:11174002:+	CRBN	9021	chr3:3216950:-	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.0106	0.1593	AP003900.6->chr21:11169720-11184046:+,CRBN->cereblon,chr3:3190676-3221394:-	HCC1569_BREAST	0.94	0.94	0.1699	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	LIMCH1--UCHL1	1	15	LIMCH1	2330	chr4:41362953:+	UCHL1	52640	chr4:41258610:+	ONLY_REF_SPLICE	YES	61	0	0.21	1	0.0106	0.1593	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[91152],LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1	HCC1569_BREAST	0.21	1	0.1699	TRUE	0	1	0	2	1	TRUE	ACH-000930
HCC1569_BREAST	AP000350.4--PKM	3	6	AP000350.4	3763	chr22:24236622:-	PKM	7417	chr15:72523520:-	INCL_NON_REF_SPLICE	YES	0	10	1	0.47	0.0319	0.0637	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	HCC1569_BREAST	0.47	1	0.0956	TRUE	0	0	0	14	0	TRUE	ACH-000930
HCC1569_BREAST	PDE4D--CENPF	4	2	PDE4D	13468	chr5:59284315:-	CENPF	66574	chr1:214802389:+	ONLY_REF_SPLICE	YES	8	99	0.43	0.06	0.0425	0.0212	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,CENPF->Oncogene{Bushman},centromere_protein_F,chr1:214776538-214837931:+	HCC1569_BREAST	0.06	0.43	0.0637	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	GALNT3--AC009495.4	4	1	GALNT3	1668	chr2:166650525:-	AC009495.4	17839	chr2:166702602:-	INCL_NON_REF_SPLICE	YES	17	0	0.23	1	0.0425	0.0106	LOCAL_REARRANGEMENT:-:[175],GALNT3->chr2:166604101-166651192:-,polypeptide_N-acetylgalactosaminyltransferase_3,AC009495.4->chr2:166651367-166702601:-	HCC1569_BREAST	0.23	1	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PPFIA1--ANO1	4	1	PPFIA1	34543	chr11:70218680:+	ANO1	47326	chr11:69933858:+	ONLY_REF_SPLICE	YES	66	7	0.07	0.42	0.0425	0.0106	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	HCC1569_BREAST	0.07	0.42	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	RCAN3--GRHL3	3	5	RCAN3	4844	chr1:24857881:+	GRHL3	32836	chr1:24690675:+	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0319	0.0531	RCAN3->RCAN_family_member_3,chr1:24829387-24867530:+,GRHL3->chr1:24645812-24690972:+,grainyhead_like_transcription_factor_3	HCC1569_BREAST	0.42	1	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	ARRB1--MAP6	3	2	ARRB1	1242	chr11:75062632:-	MAP6	26865	chr11:75380163:-	INCL_NON_REF_SPLICE	YES	12	0	0.29	1	0.0319	0.0212	ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,MAP6->chr11:75297963-75380165:-,microtubule_associated_protein_6	HCC1569_BREAST	0.29	1	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	CALR--PPP1R1B	3	0	CALR	4929	chr19:13054645:+	PPP1R1B	15134	chr17:37790248:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	CALR->calreticulin,chr19:13049392-13055303:+,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	HCC1569_BREAST	1	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	ERBB2--SH3PXD2A	3	0	ERBB2	16192	chr17:37872192:+	SH3PXD2A	41279	chr10:105420872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0319	0	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-	HCC1569_BREAST	1	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PPP1R1B--HNRNPA2B1	3	0	PPP1R1B	7556	chr17:37790257:+	HNRNPA2B1	19507	chr7:26233284:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	HCC1569_BREAST	1	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	ING1--COL4A2	2	2	ING1	1851	chr13:111365933:+	COL4A2	15370	chr13:111077081:+	ONLY_REF_SPLICE	NO	2	22	0.67	0.15	0.0212	0.0212	ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HCC1569_BREAST	0.15	0.67	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	AP003900.6--CRBN	1	5	AP003900.6	1122	chr21:11169841:+	CRBN	10026	chr3:3215945:-	ONLY_REF_SPLICE	NO	0	75	1	0.07	0.0106	0.0531	AP003900.6->chr21:11169720-11184046:+,CRBN->cereblon,chr3:3190676-3221394:-	HCC1569_BREAST	0.07	1	0.0637	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	RCAN3--GRHL3	1	5	RCAN3	6016	chr1:24859744:+	GRHL3	32836	chr1:24690675:+	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0106	0.0531	RCAN3->RCAN_family_member_3,chr1:24829387-24867530:+,GRHL3->chr1:24645812-24690972:+,grainyhead_like_transcription_factor_3	HCC1569_BREAST	0.43	1	0.0637	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	AC004980.7--PHTF2	2	0	AC004980.7	2605	chr7:76180839:+	PHTF2	14551	chr7:77522925:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	AC004980.7->chr7:76178677-76257299:+,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	HCC1569_BREAST	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	AGO2--PTK2	2	0	AGO2	5900	chr8:141582911:-	PTK2	86440	chr8:141669777:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[22281],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	HCC1569_BREAST	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	DPY19L4--IL1RN	2	0	DPY19L4	16931	chr8:95792643:+	IL1RN	29238	chr2:113868693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	DPY19L4->chr8:95731931-95806064:+,dpy-19_like_4_(C._elegans),IL1RN->chr2:113864791-113891593:+,interleukin_1_receptor_antagonist	HCC1569_BREAST	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	KPNA6--PTP4A2	2	0	KPNA6	1097	chr1:32573735:+	PTP4A2	32073	chr1:32385259:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6,PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2	HCC1569_BREAST	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	FAM207A--ITGB2	1	3	FAM207A	2331	chr21:46363752:+	ITGB2	14882	chr21:46340965:-	ONLY_REF_SPLICE	YES	110	2	0.04	0.67	0.0106	0.0319	LOCAL_INVERSION:+:-:[8021],FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A,ITGB2->chr21:46305868-46351904:-,integrin_subunit_beta_2	HCC1569_BREAST	0.04	0.67	0.0425	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	IFRD1--ZNF277	1	1	IFRD1	1465	chr7:112063487:+	ZNF277	33256	chr7:111977785:+	ONLY_REF_SPLICE	YES	1	24	0.67	0.08	0.0106	0.0106	LOCAL_REARRANGEMENT:+:[79872],IFRD1->chr7:112063023-112121072:+,interferon_related_developmental_regulator_1,ZNF277->chr7:111846643-111983151:+,zinc_finger_protein_277	HCC1569_BREAST	0.08	0.67	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	WDR37--ZMYND11	1	1	WDR37	2669	chr10:1102908:+	ZMYND11	26026	chr10:225934:+	ONLY_REF_SPLICE	YES	10	21	0.17	0.09	0.0106	0.0106	WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	HCC1569_BREAST	0.09	0.17	0.0212	TRUE	0	0	0	2	0	TRUE	ACH-000930
SW1271_LUNG	ZNF407--DCC	42	21	ZNF407	2393	chr18:72343243:+	DCC	63906	chr18:50936822:+	INCL_NON_REF_SPLICE	YES	4	0	0.94	1	0.461	0.2305	ZNF407->chr18:72265106-72777627:+,zinc_finger_protein_407,DCC->DCC_netrin_1_receptor,Oncogene{Bushman},chr18:49866542-51057784:+	SW1271_LUNG	0.94	1	0.6915	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	YAP1--PDGFD	16	14	YAP1	1709	chr11:101981900:+	PDGFD	22451	chr11:103870983:-	ONLY_REF_SPLICE	YES	250	1	0.11	0.97	0.1756	0.1537	YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,PDGFD->chr11:103777914-104035107:-,platelet_derived_growth_factor_D	SW1271_LUNG	0.11	0.97	0.3293	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	PRPF39--FAM179B	17	8	PRPF39	1151	chr14:45553452:+	FAM179B	44266	chr14:45540915:+	ONLY_REF_SPLICE	YES	23	20	0.52	0.56	0.1866	0.0878	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cortex=1},LOCAL_REARRANGEMENT:+:[9668],PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39,FAM179B->chr14:45431411-45543634:+,family_with_sequence_similarity_179_member_B	SW1271_LUNG	0.52	0.56	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	WAC--AC018705.5	18	2	WAC	2542	chr10:28822963:+	AC018705.5	30616	chr7:50609044:+	ONLY_REF_SPLICE	YES	130	0	0.13	1	0.1976	0.022	WAC->WW_domain_containing_adaptor_with_coiled-coil,chr10:28821422-28912041:+,AC018705.5->chr7:50599457-50611161:+	SW1271_LUNG	0.13	1	0.2196	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	ZNF407--DCC	14	11	ZNF407	2222	chr18:72343072:+	DCC	63906	chr18:50936822:+	INCL_NON_REF_SPLICE	YES	18	0	0.58	1	0.1537	0.1207	ZNF407->chr18:72265106-72777627:+,zinc_finger_protein_407,DCC->DCC_netrin_1_receptor,Oncogene{Bushman},chr18:49866542-51057784:+	SW1271_LUNG	0.58	1	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	YAP1--PDGFD	11	14	YAP1	1709	chr11:101981900:+	PDGFD	22469	chr11:103870965:-	ONLY_REF_SPLICE	YES	250	1	0.09	0.96	0.1207	0.1537	YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,PDGFD->chr11:103777914-104035107:-,platelet_derived_growth_factor_D	SW1271_LUNG	0.09	0.96	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	YAP1--PDGFD	12	4	YAP1	1709	chr11:101981900:+	PDGFD	24837	chr11:103818452:-	ONLY_REF_SPLICE	YES	250	9	0.06	0.64	0.1317	0.0439	YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,PDGFD->chr11:103777914-104035107:-,platelet_derived_growth_factor_D	SW1271_LUNG	0.06	0.64	0.1756	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	AP003900.6--AC008132.1	6	17	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	5	0	0.82	1	0.0659	0.1866	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1271_LUNG	0.82	1	0.2525	TRUE	0	0	0	12	0	TRUE	ACH-000890
SW1271_LUNG	PRPF39--FAM179B	5	5	PRPF39	1151	chr14:45553452:+	FAM179B	45353	chr14:45542499:+	ONLY_REF_SPLICE	YES	23	28	0.3	0.26	0.0549	0.0549	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cortex=1},LOCAL_REARRANGEMENT:+:[9668],PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39,FAM179B->chr14:45431411-45543634:+,family_with_sequence_similarity_179_member_B	SW1271_LUNG	0.26	0.3	0.1098	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	PKM--ALDOA	6	0	PKM	10614	chr15:72502054:-	ALDOA	31408	chr16:30078920:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0	GTEx&tcga_normals:1/3694=0.03%,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	SW1271_LUNG	1	1	0.0659	TRUE	0	0	0	2	0	TRUE	ACH-000890
SW1271_LUNG	AP003900.6--AC008132.1	1	14	AP003900.6	2187	chr21:11172043:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	5	0	0.75	1	0.011	0.1537	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1271_LUNG	0.75	1	0.1647	TRUE	0	0	0	12	0	TRUE	ACH-000890
SW1271_LUNG	AP000525.9--LA16c-60G3.6	4	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SW1271_LUNG	1	1	0.0439	TRUE	0	5	0	18	5	TRUE	ACH-000890
SW1271_LUNG	AP003900.6--AC008132.1	2	8	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.022	0.0878	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1271_LUNG	0.83	1	0.1098	TRUE	0	0	0	16	0	TRUE	ACH-000890
SW1271_LUNG	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SW1271_LUNG	1	1	0.0329	TRUE	0	8	0	10	8	TRUE	ACH-000890
SW1271_LUNG	HARS--PFDN1	2	0	HARS	2170	chr5:140070440:-	PFDN1	22597	chr5:139625642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	HARS->chr5:140052758-140071609:-,histidyl-tRNA_synthetase,PFDN1->chr5:139624624-139682706:-,prefoldin_subunit_1	SW1271_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	LDLRAD3--CD44	2	0	LDLRAD3	5673	chr11:36120011:+	CD44	41029	chr11:35250676:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	{Klijn_CCL:Skin=1},LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	SW1271_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	PBX3--MAPKAP1	2	0	PBX3	2279	chr9:128510902:+	MAPKAP1	46938	chr9:128206877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	SW1271_LUNG	1	1	0.022	TRUE	0	0	0	2	0	TRUE	ACH-000890
SW1271_LUNG	ZNF519--CHMP1A	2	0	ZNF519	2343	chr18:14124349:-	CHMP1A	27273	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Muscularis=1},ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SW1271_LUNG	1	1	0.022	TRUE	1	2	0	4	2	TRUE	ACH-000890
SW1271_LUNG	ETV6--PRR4	1	1	ETV6	1307	chr12:11803094:+	PRR4	24303	chr12:11199787:-	ONLY_REF_SPLICE	YES	10	44	0.17	0.04	0.011	0.011	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal)	SW1271_LUNG	0.04	0.17	0.022	TRUE	0	1	0	1	0	TRUE	ACH-000890
SW1271_LUNG	RIC8B--DRAM1	1	1	RIC8B	11191	chr12:107237725:+	DRAM1	30592	chr12:102291641:+	ONLY_REF_SPLICE	NO	8	35	0.2	0.05	0.011	0.011	RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+,DRAM1->DNA_damage_regulated_autophagy_modulator_1,Oncogene{Bushman},chr12:102271129-102405908:+	SW1271_LUNG	0.05	0.2	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000890
BHY_UPPER_AERODIGESTIVE_TRACT	MET--CAV1	109	32	MET	9422	chr7:116381079:+	CAV1	32070	chr7:116166579:+	ONLY_REF_SPLICE	YES	126	221	0.53	0.39	1.1243	0.3301	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	BHY_UPPER_AERODIGESTIVE_TRACT	0.39	0.53	1.4544	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RPS6KB1--VMP1	75	35	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	11	617	0.91	0.15	0.7736	0.361	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	BHY_UPPER_AERODIGESTIVE_TRACT	0.15	0.91	1.1346	TRUE	0	8	0	9	5	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	PKD1--ABCA3	59	25	PKD1	6432	chr16:2165372:-	ABCA3	56270	chr16:2335638:-	INCL_NON_REF_SPLICE	YES	9	0	0.9	1	0.6086	0.2579	PKD1->chr16:2138711-2185899:-,polycystin_1,_transient_receptor_potential_channel_interacting,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	BHY_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.8665	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	VAPA--RAB31	34	5	VAPA	1334	chr18:9914332:+	RAB31	38499	chr18:9859225:+	ONLY_REF_SPLICE	YES	104	63	0.27	0.38	0.3507	0.0516	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Adrenal_Gland=1,Whole_Blood=1},{Klijn_CCL:Lung=1,Head-Neck=1},LOCAL_REARRANGEMENT:+:[51451],VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+	BHY_UPPER_AERODIGESTIVE_TRACT	0.27	0.38	0.4023	TRUE	0	1	0	3	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RPS6KB1--VMP1	7	35	RPS6KB1	7326	chr17:57992064:+	VMP1	38445	chr17:57911373:+	ONLY_REF_SPLICE	YES	11	41	0.79	0.51	0.0722	0.361	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	BHY_UPPER_AERODIGESTIVE_TRACT	0.51	0.79	0.4332	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	STK3--RP11-410L14.2	8	4	STK3	29829	chr8:99538970:-	RP11-410L14.2	40104	chr8:100009194:-	ONLY_REF_SPLICE	YES	38	8	0.24	0.6	0.0825	0.0413	LOCAL_REARRANGEMENT:-:[53936],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,RP11-410L14.2->chr8:100008991-100025272:-	BHY_UPPER_AERODIGESTIVE_TRACT	0.24	0.6	0.1238	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	FGD6--USP44	8	3	FGD6	4683	chr12:95602619:-	USP44	38991	chr12:95928102:-	ONLY_REF_SPLICE	YES	45	0	0.2	1	0.0825	0.0309	FGD6->FYVE,_RhoGEF_and_PH_domain_containing_6,chr12:95470525-95611258:-,USP44->chr12:95910336-95945266:-,ubiquitin_specific_peptidase_44	BHY_UPPER_AERODIGESTIVE_TRACT	0.2	1	0.1134	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RPS6KB1--VMP1	2	16	RPS6KB1	5427	chr17:57990165:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	21	617	0.46	0.03	0.0206	0.165	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	BHY_UPPER_AERODIGESTIVE_TRACT	0.03	0.46	0.1856	TRUE	0	5	0	6	5	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MAGI3--SYCP1	5	3	MAGI3	1601	chr1:113933971:+	SYCP1	63966	chr1:115537319:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0516	0.0309	MAGI3->chr1:113933371-114228545:+,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_3,SYCP1->chr1:115397424-115537991:+,synaptonemal_complex_protein_1	BHY_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.0825	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	FGD6--USP44	4	1	FGD6	1258	chr12:95611001:-	USP44	38991	chr12:95928102:-	ONLY_REF_SPLICE	YES	16	0	0.24	1	0.0413	0.0103	FGD6->FYVE,_RhoGEF_and_PH_domain_containing_6,chr12:95470525-95611258:-,USP44->chr12:95910336-95945266:-,ubiquitin_specific_peptidase_44	BHY_UPPER_AERODIGESTIVE_TRACT	0.24	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	TXNRD1--CHST11	4	0	TXNRD1	27532	chr12:104733051:+	CHST11	40027	chr12:105150727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0413	TRUE	0	0	0	2	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	ZBTB1--RTN1	2	1	ZBTB1	2235	chr14:64971664:+	RTN1	16392	chr14:60213199:-	ONLY_REF_SPLICE	YES	7	1	0.3	0.75	0.0206	0.0103	ZBTB1->chr14:64970430-65000408:+,zinc_finger_and_BTB_domain_containing_1,RTN1->chr14:60062694-60337684:-,reticulon_1	BHY_UPPER_AERODIGESTIVE_TRACT	0.3	0.75	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	ALG14--RP11-57H12.6	2	0	ALG14	2335	chr1:95530422:-	RP11-57H12.6	20046	chr1:95609447:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	LOCAL_INVERSION:-:+:[44978],ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-,RP11-57H12.6->chr1:95583479-95712781:+	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	KLF7--AC007879.2	2	0	KLF7	2801	chr2:208030191:-	AC007879.2	22964	chr2:208051712:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	LOCAL_REARRANGEMENT:-:[19450],KLF7->Kruppel-like_factor_7_(ubiquitous),chr2:207938861-208031991:-,AC007879.2->chr2:208051441-208100790:-	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MAGI3--TSHB	2	0	MAGI3	1601	chr1:113933971:+	TSHB	35554	chr1:115576594:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	MAGI3->chr1:113933371-114228545:+,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_3,TSHB->chr1:115572415-115576941:+,thyroid_stimulating_hormone_beta	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	PISD--YWHAH	2	0	PISD	3545	chr22:32044087:-	YWHAH	24267	chr22:32352126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx_v2:{count=2;pct=0.02%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Caudate_(basal_ganglia)=1},PISD->chr22:32014477-32058418:-,phosphatidylserine_decarboxylase,YWHAH->chr22:32340447-32353590:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_eta	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0206	TRUE	0	2	0	2	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RAB27A--NDUFAF7	2	0	RAB27A	4005	chr15:55581914:-	NDUFAF7	27658	chr2:37471006:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RAB27A->RAB27A,_member_RAS_oncogene_family,chr15:55495164-55611311:-,NDUFAF7->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_7,chr2:37458774-37480546:+	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RP11-681L8.1--STPG2	2	0	RP11-681L8.1	2417	chr4:98493799:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0206	TRUE	0	2	0	5	2	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MAGI3--TSHB	1	1	MAGI3	1601	chr1:113933971:+	TSHB	34943	chr1:115575983:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0103	0.0103	MAGI3->chr1:113933371-114228545:+,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_3,TSHB->chr1:115572415-115576941:+,thyroid_stimulating_hormone_beta	BHY_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000548
NCIH1975_LUNG	PAK4--SLC24A4	98	53	PAK4	1150	chr19:39616559:+	SLC24A4	24735	chr14:92900256:+	ONLY_REF_SPLICE	YES	56	0	0.73	1	1.1372	0.615	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,SLC24A4->chr14:92788925-92962596:+,solute_carrier_family_24_member_4	NCIH1975_LUNG	0.73	1	1.7522	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	MAMLD1--CD99L2	26	4	MAMLD1	5270	chrX:149613878:+	CD99L2	26537	chrX:149963959:-	ONLY_REF_SPLICE	YES	3	75	0.91	0.29	0.3017	0.0464	MAMLD1->chrX:149529689-149682448:+,mastermind_like_domain_containing_1,CD99L2->CD99_molecule_like_2,chrX:149934810-150067289:-	NCIH1975_LUNG	0.29	0.91	0.3481	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	ANO6--RP11-386G11.5	7	4	ANO6	1405	chr12:45610174:+	RP11-386G11.5	37478	chr12:49403092:+	ONLY_REF_SPLICE	YES	80	4	0.12	0.73	0.0812	0.0464	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-386G11.5->chr12:49392150-49412988:+	NCIH1975_LUNG	0.12	0.73	0.1276	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	SLC9A7--OGT	6	3	SLC9A7	2551	chrX:46541771:-	OGT	34287	chrX:70775804:+	ONLY_REF_SPLICE	YES	47	209	0.16	0.04	0.0696	0.0348	{Klijn_CCL:Lung=1},SLC9A7->chrX:46464753-46618490:-,solute_carrier_family_9_member_A7,OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+	NCIH1975_LUNG	0.04	0.16	0.1044	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	ZNF404--CACNA1A	6	3	ZNF404	2614	chr19:44388108:-	CACNA1A	13730	chr19:13630317:-	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.0696	0.0348	ZNF404->chr19:44376515-44405537:-,zinc_finger_protein_404,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	NCIH1975_LUNG	0.64	1	0.1044	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	ZNF595--PIGG	6	3	ZNF595	1207	chr4:53385:+	PIGG	19580	chr4:509762:+	ONLY_REF_SPLICE	YES	22	112	0.29	0.07	0.0696	0.0348	{Klijn_CCL:Lung=1},ZNF595->chr4:53179-88099:+,zinc_finger_protein_595,PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G	NCIH1975_LUNG	0.07	0.29	0.1044	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	ANO6--RP11-386G11.5	4	7	ANO6	2511	chr12:45622056:+	RP11-386G11.5	37478	chr12:49403092:+	ONLY_REF_SPLICE	YES	81	4	0.12	0.73	0.0464	0.0812	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-386G11.5->chr12:49392150-49412988:+	NCIH1975_LUNG	0.12	0.73	0.1276	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	ANO6--RP11-386G11.5	5	3	ANO6	1405	chr12:45610174:+	RP11-386G11.5	39392	chr12:49412019:+	ONLY_REF_SPLICE	YES	80	7	0.09	0.53	0.058	0.0348	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-386G11.5->chr12:49392150-49412988:+	NCIH1975_LUNG	0.09	0.53	0.0928	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	PAK4--SLC24A4	1	19	PAK4	1150	chr19:39616559:+	SLC24A4	26887	chr14:92908433:+	ONLY_REF_SPLICE	YES	56	8	0.26	0.71	0.0116	0.2205	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,SLC24A4->chr14:92788925-92962596:+,solute_carrier_family_24_member_4	NCIH1975_LUNG	0.26	0.71	0.2321	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	ANO6--RP11-386G11.5	4	5	ANO6	2511	chr12:45622056:+	RP11-386G11.5	39392	chr12:49412019:+	ONLY_REF_SPLICE	YES	81	7	0.1	0.56	0.0464	0.058	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-386G11.5->chr12:49392150-49412988:+	NCIH1975_LUNG	0.1	0.56	0.1044	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	ZNF404--CACNA1A	5	1	ZNF404	2614	chr19:44388108:-	CACNA1A	15537	chr19:13617039:-	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.058	0.0116	ZNF404->chr19:44376515-44405537:-,zinc_finger_protein_404,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	NCIH1975_LUNG	0.55	1	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	EIF1--PPIA	5	0	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	NCIH1975_LUNG	1	1	0.058	TRUE	0	0	0	7	0	TRUE	ACH-000587
NCIH1975_LUNG	AC005540.3--LDHA	4	2	AC005540.3	2138	chr2:191745648:-	LDHA	5439	chr11:18416110:+	INCL_NON_REF_SPLICE	YES	1	7	0.86	0.46	0.0464	0.0232	AC005540.3->chr2:191745523-191746785:-,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	NCIH1975_LUNG	0.46	0.86	0.0696	TRUE	0	0	0	3	0	TRUE	ACH-000587
NCIH1975_LUNG	ZNF283--NUMB	4	1	ZNF283	6617	chr19:44341331:+	NUMB	21892	chr14:73876776:-	ONLY_REF_SPLICE	YES	18	10	0.22	0.33	0.0464	0.0116	ZNF283->chr19:44331444-44353307:+,zinc_finger_protein_283,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	NCIH1975_LUNG	0.22	0.33	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	RNF130--RASGEF1C	4	0	RNF130	2858	chr5:179467453:-	RASGEF1C	32208	chr5:179555610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:-:[28677],RNF130->chr5:179338651-179499118:-,ring_finger_protein_130,RASGEF1C->RasGEF_domain_family_member_1C,chr5:179527795-179636153:-	NCIH1975_LUNG	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	AP000350.4--RPS15A	2	0	AP000350.4	3772	chr22:24236613:-	RPS15A	8037	chr16:18800441:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	AP000350.4->chr22:24236613-24241117:-,RPS15A->chr16:18792617-18801705:-,ribosomal_protein_S15a	NCIH1975_LUNG	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000587
NCIH1975_LUNG	GAPDH--ACTB	2	0	GAPDH	1643	chr12:6643735:+	ACTB	12775	chr7:5569294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:6/3694=0.16%,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH1975_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	HDDC2--RNF146	2	0	HDDC2	3774	chr6:125619860:-	RNF146	20433	chr6:127601376:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:1/3694=0.03%,HDDC2->HD_domain_containing_2,chr6:125541108-125623282:-,RNF146->chr6:127587755-127609712:+,ring_finger_protein_146	NCIH1975_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	PAK4--SLC24A4	1	4	PAK4	1110	chr19:39616519:+	SLC24A4	24735	chr14:92900256:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0116	0.0464	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,SLC24A4->chr14:92788925-92962596:+,solute_carrier_family_24_member_4	NCIH1975_LUNG	0.71	1	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	SLC25A13--SHFM1	2	0	SLC25A13	1206	chr7:95951254:-	SHFM1	29567	chr7:96324203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Spleen=1},SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	NCIH1975_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	TMEM182--TPD52L2	2	0	TMEM182	1106	chr2:103353472:+	TPD52L2	21463	chr20:62514072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TMEM182->chr2:103353367-103460352:+,transmembrane_protein_182,TPD52L2->chr20:62496596-62522898:+,tumor_protein_D52_like_2	NCIH1975_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	UBAP2--DCAF12	2	0	UBAP2	1125	chr9:34048823:-	DCAF12	39988	chr9:34107563:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Testis=1},LOCAL_REARRANGEMENT:-:[37438],UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,DCAF12->DDB1_and_CUL4_associated_factor_12,chr9:34086385-34127397:-	NCIH1975_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	STK24--RNF113B	1	3	STK24	5361	chr13:99171497:-	RNF113B	25679	chr13:98828430:-	ONLY_REF_SPLICE	YES	1	20	0.8	0.17	0.0116	0.0348	STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24,RNF113B->chr13:98828039-98829519:-,ring_finger_protein_113B	NCIH1975_LUNG	0.17	0.8	0.0464	TRUE	0	0	0	2	0	TRUE	ACH-000587
PC14_LUNG	ZSCAN22--CHMP2A	767	65	ZSCAN22	1096	chr19:58838480:+	CHMP2A	11518	chr19:59065603:-	ONLY_REF_SPLICE	YES	0	125	1	0.87	8.5647	0.7258	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC14_LUNG	0.87	1	9.2905	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	ZSCAN22--CHMP2A	173	32	ZSCAN22	1091	chr19:58838475:+	CHMP2A	11518	chr19:59065603:-	INCL_NON_REF_SPLICE	YES	5	125	0.98	0.62	1.9318	0.3573	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC14_LUNG	0.62	0.98	2.2891	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	FUT8--GALNT16	164	64	FUT8	12030	chr14:66028484:+	GALNT16	42140	chr14:69808398:+	ONLY_REF_SPLICE	YES	101	0	0.69	1	1.8313	0.7147	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16	PC14_LUNG	0.69	1	2.546	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	CPSF3--ASAP2	40	7	CPSF3	8834	chr2:9576490:+	ASAP2	48165	chr2:9533611:+	ONLY_REF_SPLICE	YES	106	37	0.31	0.56	0.4467	0.0782	LOCAL_REARRANGEMENT:+:[17885],CPSF3->chr2:9563697-9613230:+,cleavage_and_polyadenylation_specific_factor_3,ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+	PC14_LUNG	0.31	0.56	0.5249	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	ZSCAN22--CHMP2A	23	66	ZSCAN22	1096	chr19:58838480:+	CHMP2A	10677	chr19:59066444:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2568	0.737	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC14_LUNG	1	1	0.9938	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	RPN2--TTI1	25	6	RPN2	1960	chr20:35807772:+	TTI1	30304	chr20:36634799:-	ONLY_REF_SPLICE	YES	347	57	0.08	0.35	0.2792	0.067	RPN2->chr20:35806813-35870022:+,ribophorin_II,TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-	PC14_LUNG	0.08	0.35	0.3462	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	SHISA9--CTD-2135D7.2	23	0	SHISA9	4767	chr16:13003719:+	CTD-2135D7.2	22825	chr16:14027076:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2568	0	SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,CTD-2135D7.2->chr16:14024534-14029492:-	PC14_LUNG	1	1	0.2568	TRUE	0	1	0	2	1	TRUE	ACH-000030
PC14_LUNG	EFHD1--UBR3	19	3	EFHD1	7630	chr2:233537153:+	UBR3	52132	chr2:170917589:+	ONLY_REF_SPLICE	YES	33	19	0.4	0.54	0.2122	0.0335	EFHD1->EF-hand_domain_family_member_D1,chr2:233470767-233547491:+,UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative)	PC14_LUNG	0.4	0.54	0.2457	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	ZSCAN22--CHMP2A	3	61	ZSCAN22	1096	chr19:58838480:+	CHMP2A	11527	chr19:59065594:-	INCL_NON_REF_SPLICE	YES	0	117	1	0.35	0.0335	0.6812	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC14_LUNG	0.35	1	0.7147	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	ZSCAN22--CHMP2A	6	32	ZSCAN22	1091	chr19:58838475:+	CHMP2A	10677	chr19:59066444:-	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.067	0.3573	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC14_LUNG	0.88	1	0.4243	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	FUT8--GALNT16	1	36	FUT8	12030	chr14:66028484:+	GALNT16	43224	chr14:69813757:+	ONLY_REF_SPLICE	YES	101	1	0.27	0.97	0.0112	0.402	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16	PC14_LUNG	0.27	0.97	0.4132	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	GALNT16--RP1-261D10.2	4	6	GALNT16	11075	chr14:69800317:+	RP1-261D10.2	26828	chr14:71778093:-	INCL_NON_REF_SPLICE	YES	0	10	1	0.5	0.0447	0.067	GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16,RP1-261D10.2->chr14:71759442-71788531:-	PC14_LUNG	0.5	1	0.1117	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	UBB--MTND2P28	5	0	UBB	2449	chr17:16285560:+	MTND2P28	5962	chr1:565033:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	UBB->chr17:16284112-16286059:+,ubiquitin_B,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PC14_LUNG	1	1	0.0558	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	IQUB--NDUFA5	4	3	IQUB	1586	chr7:123174546:-	NDUFA5	27445	chr7:123190640:-	ONLY_REF_SPLICE	YES	0	58	1	0.11	0.0447	0.0335	LOCAL_REARRANGEMENT:-:[1920],IQUB->IQ_motif_and_ubiquitin_domain_containing,chr7:123092454-123175131:-,NDUFA5->NADH:ubiquinone_oxidoreductase_subunit_A5,chr7:123177051-123198309:-	PC14_LUNG	0.11	1	0.0782	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	NRBF2--RP11-170M17.1	4	0	NRBF2	1211	chr10:64893260:+	RP11-170M17.1	11345	chr10:65750029:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	NRBF2->chr10:64893050-64914783:+,nuclear_receptor_binding_factor_2,RP11-170M17.1->chr10:65424424-65750328:+	PC14_LUNG	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	UBB--MTND2P28	4	0	UBB	2249	chr17:16285360:+	MTND2P28	5995	chr1:565066:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	UBB->chr17:16284112-16286059:+,ubiquitin_B,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PC14_LUNG	1	1	0.0447	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	GALNT16--RP1-261D10.2	3	3	GALNT16	11075	chr14:69800317:+	RP1-261D10.2	27525	chr14:71777396:-	ONLY_REF_SPLICE	YES	0	11	1	0.35	0.0335	0.0335	GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16,RP1-261D10.2->chr14:71759442-71788531:-	PC14_LUNG	0.35	1	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	GALNT16--RP1-261D10.2	2	2	GALNT16	11075	chr14:69800317:+	RP1-261D10.2	29841	chr14:71762173:-	ONLY_REF_SPLICE	YES	0	11	1	0.27	0.0223	0.0223	GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16,RP1-261D10.2->chr14:71759442-71788531:-	PC14_LUNG	0.27	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	ACTL6A--INO80D	2	0	ACTL6A	1094	chr3:179280761:+	INO80D	25534	chr2:206874518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	HGNC_GENEFAM,ACTL6A->actin_like_6A,chr3:179280668-179306196:+,INO80D->INO80_complex_subunit_D,chr2:206858445-206951027:-	PC14_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	LARP4--TMBIM6	2	0	LARP4	2426	chr12:50794811:+	TMBIM6	41838	chr12:50146247:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	{Klijn_CCL:Urinary_Bladder=1},LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+,TMBIM6->chr12:50101508-50158717:+,transmembrane_BAX_inhibitor_motif_containing_6	PC14_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	NDUFA4L2--ITGA3	2	0	NDUFA4L2	1037	chr12:57634462:-	ITGA3	11399	chr17:48141441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NDUFA4L2->NADH_dehydrogenase_(ubiquinone)_1_alpha_subcomplex,_4-like_2,chr12:57628686-57634498:-,ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3	PC14_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	RCC1--GNAS	2	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	PC14_LUNG	1	1	0.0223	TRUE	0	3	0	13	2	TRUE	ACH-000030
PC14_LUNG	RP11-307P5.1--SASH1	2	0	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	PC14_LUNG	1	1	0.0223	TRUE	0	0	0	16	0	TRUE	ACH-000030
PC14_LUNG	RP11-307P5.1--SASH1	2	0	RP11-307P5.1	1117	chr6:147981955:+	SASH1	21482	chr6:148835460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	PC14_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	VAPA--FCGBP	2	0	VAPA	1334	chr18:9914332:+	FCGBP	35837	chr19:40406060:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,FCGBP->Fc_fragment_of_IgG_binding_protein,chr19:40353963-40440533:-	PC14_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	RP11-307P5.1--SASH1	1	2	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	46	0	0.06	1	0.0112	0.0223	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	PC14_LUNG	0.06	1	0.0335	TRUE	0	0	0	11	0	TRUE	ACH-000030
PC14_LUNG	TDRD15--AC011752.1	1	1	TDRD15	2241	chr2:21350583:+	AC011752.1	15382	chr2:21618893:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0112	0.0112	TDRD15->chr2:21346789-21366144:+,tudor_domain_containing_15,AC011752.1->chr2:21540532-21784185:+	PC14_LUNG	0.4	1	0.0224	TRUE	1	1	0	1	1	TRUE	ACH-000030
HUPT3_PANCREAS	MLLT1--TMC8	293	58	MLLT1	2357	chr19:6270590:-	TMC8	24440	chr17:76137498:+	INCL_NON_REF_SPLICE	YES	62	1	0.85	1	3.1279	0.6192	MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1,TMC8->chr17:76126851-76139049:+,transmembrane_channel_like_8	HUPT3_PANCREAS	0.85	1	3.7471	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	DHX37--BRI3BP	211	140	DHX37	1206	chr12:125473463:-	BRI3BP	28838	chr12:125497080:+	ONLY_REF_SPLICE	YES	246	134	0.59	0.72	2.2525	1.4946	LOCAL_INVERSION:-:+:[4578],DHX37->DEAH-box_helicase_37,chr12:125431371-125473668:-,BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+	HUPT3_PANCREAS	0.59	0.72	3.7471	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	DCAF7--DDX42	221	84	DCAF7	8631	chr17:61666599:+	DDX42	21636	chr17:61875398:+	ONLY_REF_SPLICE	YES	652	214	0.32	0.59	2.3593	0.8967	DCAF7->DDB1_and_CUL4_associated_factor_7,chr17:61627822-61671639:+,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	HUPT3_PANCREAS	0.32	0.59	3.256	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	TEX2--DDX42	172	24	TEX2	1134	chr17:62340528:-	DDX42	32059	chr17:61875398:+	ONLY_REF_SPLICE	YES	66	214	0.75	0.48	1.8362	0.2562	TEX2->chr17:62224587-62340661:-,testis_expressed_2,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	HUPT3_PANCREAS	0.48	0.75	2.0924	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	RAB8A--ADAM18	123	58	RAB8A	4251	chr19:16232620:+	ADAM18	34948	chr8:39550119:+	ONLY_REF_SPLICE	YES	252	4	0.42	0.98	1.3131	0.6192	{Klijn_CCL:Pancreas=1},RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+,ADAM18->ADAM_metallopeptidase_domain_18,chr8:39442008-39587583:+	HUPT3_PANCREAS	0.42	0.98	1.9323	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	TLK2--ICAM2	100	116	TLK2	12803	chr17:60601692:+	ICAM2	42715	chr17:62084095:-	ONLY_REF_SPLICE	YES	728	627	0.23	0.26	1.0676	1.2384	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,ICAM2->chr17:62079954-62097994:-,intercellular_adhesion_molecule_2	HUPT3_PANCREAS	0.23	0.26	2.306	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	ASAP2--RP11-734K21.2	85	42	ASAP2	3685	chr2:9437574:+	RP11-734K21.2	35814	chr2:9244565:+	ONLY_REF_SPLICE	YES	75	13	0.63	0.91	0.9074	0.4484	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-734K21.2->chr2:9243569-9245243:+	HUPT3_PANCREAS	0.63	0.91	1.3558	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	TLK2--ICAM2	73	76	TLK2	11707	chr17:60600538:+	ICAM2	42715	chr17:62084095:-	ONLY_REF_SPLICE	YES	699	627	0.18	0.19	0.7793	0.8113	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,ICAM2->chr17:62079954-62097994:-,intercellular_adhesion_molecule_2	HUPT3_PANCREAS	0.18	0.19	1.5906	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	ERN1--SMURF2	80	28	ERN1	4189	chr17:62175481:-	SMURF2	35149	chr17:62602758:-	ONLY_REF_SPLICE	YES	79	9	0.58	0.92	0.854	0.2989	{Klijn_CCL:Pancreas=1},ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	HUPT3_PANCREAS	0.58	0.92	1.1529	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	TANC2--ERN1	73	21	TANC2	3326	chr17:61176718:+	ERN1	60858	chr17:62144292:-	ONLY_REF_SPLICE	YES	121	116	0.44	0.45	0.7793	0.2242	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1	HUPT3_PANCREAS	0.44	0.45	1.0035	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	ASAP2--RP11-734K21.2	60	56	ASAP2	3685	chr2:9437574:+	RP11-734K21.2	35785	chr2:9244536:+	INCL_NON_REF_SPLICE	YES	75	12	0.61	0.91	0.6405	0.5978	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-734K21.2->chr2:9243569-9245243:+	HUPT3_PANCREAS	0.61	0.91	1.2383	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	RARS2--MAP3K7	63	27	RARS2	4773	chr6:88272420:-	MAP3K7	29872	chr6:91263305:-	ONLY_REF_SPLICE	YES	25	27	0.78	0.77	0.6726	0.2882	RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-,MAP3K7->Oncogene{Bushman},chr6:91223292-91296764:-,mitogen-activated_protein_kinase_kinase_kinase_7	HUPT3_PANCREAS	0.77	0.78	0.9608	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MED13--ERN1	50	30	MED13	3547	chr17:60129898:-	ERN1	43263	chr17:62175601:-	ONLY_REF_SPLICE	YES	244	65	0.25	0.55	0.5338	0.3203	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1	HUPT3_PANCREAS	0.25	0.55	0.8541	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MRC2--MARCH10	49	20	MRC2	15392	chr17:60759738:+	MARCH10	45177	chr17:60779119:-	ONLY_REF_SPLICE	YES	115	1	0.38	0.99	0.5231	0.2135	LOCAL_INVERSION:+:-:[7717],MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2,MARCH10->chr17:60778675-60885705:-,membrane_associated_ring-CH-type_finger_10	HUPT3_PANCREAS	0.38	0.99	0.7366	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MED13--TANC2	46	14	MED13	14191	chr17:60069901:-	TANC2	40176	chr17:61086898:+	INCL_NON_REF_SPLICE	YES	239	0	0.2	1	0.4911	0.1495	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2	HUPT3_PANCREAS	0.2	1	0.6406	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	LINC00472--RARS2	44	18	LINC00472	4804	chr6:72126113:-	RARS2	21292	chr6:88240660:-	ONLY_REF_SPLICE	YES	15	45	0.81	0.58	0.4697	0.1922	LINC00472->chr6:72054047-72130472:-,long_intergenic_non-protein_coding_RNA_472,RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-	HUPT3_PANCREAS	0.58	0.81	0.6619	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	AFF1--PTPN13	32	17	AFF1	19695	chr4:88046295:+	PTPN13	71358	chr4:87701555:+	ONLY_REF_SPLICE	YES	39	75	0.56	0.4	0.3416	0.1815	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BLCA:2|LUAD:1|LUSC:1],AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13	HUPT3_PANCREAS	0.4	0.56	0.5231	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	TLK2--ICAM2	5	120	TLK2	12803	chr17:60601692:+	ICAM2	41628	chr17:62085182:-	ONLY_REF_SPLICE	YES	728	572	0.15	0.18	0.0534	1.2811	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,ICAM2->chr17:62079954-62097994:-,intercellular_adhesion_molecule_2	HUPT3_PANCREAS	0.15	0.18	1.3345	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	TLK2--ICAM2	4	107	TLK2	12803	chr17:60601692:+	ICAM2	42719	chr17:62084091:-	ONLY_REF_SPLICE	YES	728	608	0.13	0.15	0.0427	1.1423	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,ICAM2->chr17:62079954-62097994:-,intercellular_adhesion_molecule_2	HUPT3_PANCREAS	0.13	0.15	1.185	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	TLK2--ICAM2	6	78	TLK2	11707	chr17:60600538:+	ICAM2	41628	chr17:62085182:-	ONLY_REF_SPLICE	YES	699	572	0.11	0.13	0.0641	0.8327	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,ICAM2->chr17:62079954-62097994:-,intercellular_adhesion_molecule_2	HUPT3_PANCREAS	0.11	0.13	0.8968	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	DCAF7--DDX42	4	84	DCAF7	8631	chr17:61666599:+	DDX42	21620	chr17:61875382:+	INCL_NON_REF_SPLICE	YES	652	246	0.12	0.26	0.0427	0.8967	DCAF7->DDB1_and_CUL4_associated_factor_7,chr17:61627822-61671639:+,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	HUPT3_PANCREAS	0.12	0.26	0.9394	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	ERN1--SMURF2	20	20	ERN1	4189	chr17:62175481:-	SMURF2	36188	chr17:62594608:-	ONLY_REF_SPLICE	YES	79	34	0.34	0.54	0.2135	0.2135	{Klijn_CCL:Pancreas=1},ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	HUPT3_PANCREAS	0.34	0.54	0.427	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MRC2--LRRC37A3	20	12	MRC2	1520	chr17:60705281:+	LRRC37A3	41790	chr17:62857091:-	ONLY_REF_SPLICE	YES	40	51	0.44	0.39	0.2135	0.1281	{Klijn_CCL:Pancreas=1},MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	HUPT3_PANCREAS	0.39	0.44	0.3416	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	RAB8A--ADAM18	8	60	RAB8A	4251	chr19:16232620:+	ADAM18	31369	chr8:39534950:+	ONLY_REF_SPLICE	YES	252	0	0.21	1	0.0854	0.6405	{Klijn_CCL:Pancreas=1},RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+,ADAM18->ADAM_metallopeptidase_domain_18,chr8:39442008-39587583:+	HUPT3_PANCREAS	0.21	1	0.7259	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	DHX37--BRI3BP	3	79	DHX37	1206	chr12:125473463:-	BRI3BP	29941	chr12:125509537:+	ONLY_REF_SPLICE	YES	246	418	0.25	0.16	0.032	0.8434	LOCAL_INVERSION:-:+:[4578],DHX37->DEAH-box_helicase_37,chr12:125431371-125473668:-,BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+	HUPT3_PANCREAS	0.16	0.25	0.8754	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	TANC2--ERN1	18	16	TANC2	3215	chr17:61176607:+	ERN1	60858	chr17:62144292:-	ONLY_REF_SPLICE	YES	119	116	0.22	0.23	0.1922	0.1708	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1	HUPT3_PANCREAS	0.22	0.23	0.363	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MAP3K3--LRRC37A3	20	6	MAP3K3	1349	chr17:61700123:+	LRRC37A3	41472	chr17:62857091:-	ONLY_REF_SPLICE	YES	1	51	0.96	0.34	0.2135	0.0641	{Klijn_CCL:Pancreas=1},MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	HUPT3_PANCREAS	0.34	0.96	0.2776	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MAP3K3--LRRC37A3	17	6	MAP3K3	1349	chr17:61700123:+	LRRC37A3	40353	chr17:62859136:-	ONLY_REF_SPLICE	YES	1	37	0.96	0.38	0.1815	0.0641	{Klijn_CCL:Pancreas=1},MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	HUPT3_PANCREAS	0.38	0.96	0.2456	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	RAB8A--ADAM18	10	34	RAB8A	4251	chr19:16232620:+	ADAM18	36029	chr8:39564309:+	ONLY_REF_SPLICE	YES	252	0	0.15	1	0.1068	0.363	{Klijn_CCL:Pancreas=1},RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+,ADAM18->ADAM_metallopeptidase_domain_18,chr8:39442008-39587583:+	HUPT3_PANCREAS	0.15	1	0.4698	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	LINC00472--RARS2	11	20	LINC00472	4804	chr6:72126113:-	RARS2	20215	chr6:88251712:-	ONLY_REF_SPLICE	YES	15	24	0.67	0.56	0.1174	0.2135	LINC00472->chr6:72054047-72130472:-,long_intergenic_non-protein_coding_RNA_472,RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-	HUPT3_PANCREAS	0.56	0.67	0.3309	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	LINC00472--RARS2	10	21	LINC00472	4804	chr6:72126113:-	RARS2	19131	chr6:88255417:-	ONLY_REF_SPLICE	YES	15	18	0.67	0.63	0.1068	0.2242	LINC00472->chr6:72054047-72130472:-,long_intergenic_non-protein_coding_RNA_472,RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-	HUPT3_PANCREAS	0.63	0.67	0.331	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	LRRC6--GSDMC	11	8	LRRC6	7275	chr8:133644986:-	GSDMC	21016	chr8:130798741:-	INCL_NON_REF_SPLICE	YES	4	4	0.83	0.83	0.1174	0.0854	LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6,GSDMC->chr8:130760442-130799134:-,gasdermin_C	HUPT3_PANCREAS	0.83	0.83	0.2028	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MAP3K3--LRRC37A3	11	6	MAP3K3	1349	chr17:61700123:+	LRRC37A3	38081	chr17:62865284:-	ONLY_REF_SPLICE	YES	1	18	0.94	0.49	0.1174	0.0641	{Klijn_CCL:Pancreas=1},MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	HUPT3_PANCREAS	0.49	0.94	0.1815	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	RAB8A--ADAM18	1	40	RAB8A	3190	chr19:16229096:+	ADAM18	34948	chr8:39550119:+	ONLY_REF_SPLICE	NO	265	4	0.13	0.91	0.0107	0.427	{Klijn_CCL:Pancreas=1},RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+,ADAM18->ADAM_metallopeptidase_domain_18,chr8:39442008-39587583:+	HUPT3_PANCREAS	0.13	0.91	0.4377	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	LRRC6--GSDMC	9	4	LRRC6	7275	chr8:133644986:-	GSDMC	22501	chr8:130789837:-	ONLY_REF_SPLICE	YES	4	9	0.76	0.59	0.0961	0.0427	LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6,GSDMC->chr8:130760442-130799134:-,gasdermin_C	HUPT3_PANCREAS	0.59	0.76	0.1388	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MLLT1--C17orf99	9	0	MLLT1	2357	chr19:6270590:-	C17orf99	15522	chr17:76142960:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0961	0	MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1,C17orf99->chr17:76142434-76162258:+,chromosome_17_open_reading_frame_99	HUPT3_PANCREAS	1	1	0.0961	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	RARS2--MAP3K7	3	24	RARS2	4773	chr6:88272420:-	MAP3K7	29876	chr6:91263301:-	INCL_NON_REF_SPLICE	YES	25	26	0.52	0.51	0.032	0.2562	RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-,MAP3K7->Oncogene{Bushman},chr6:91223292-91296764:-,mitogen-activated_protein_kinase_kinase_kinase_7	HUPT3_PANCREAS	0.51	0.52	0.2882	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MRC2--MARCH10	5	9	MRC2	1520	chr17:60705281:+	MARCH10	41308	chr17:60788705:-	ONLY_REF_SPLICE	YES	40	0	0.26	1	0.0534	0.0961	LOCAL_INVERSION:+:-:[7717],MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2,MARCH10->chr17:60778675-60885705:-,membrane_associated_ring-CH-type_finger_10	HUPT3_PANCREAS	0.26	1	0.1495	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	TEX2--DDX42	3	14	TEX2	1134	chr17:62340528:-	DDX42	34206	chr17:61877828:+	ONLY_REF_SPLICE	YES	66	339	0.2	0.05	0.032	0.1495	TEX2->chr17:62224587-62340661:-,testis_expressed_2,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	HUPT3_PANCREAS	0.05	0.2	0.1815	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	EREG--RPS28	5	0	EREG	1117	chr4:75230976:+	RPS28	13469	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	EREG->chr4:75230860-75254468:+,epiregulin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HUPT3_PANCREAS	1	1	0.0534	TRUE	0	0	0	3	0	TRUE	ACH-000118
HUPT3_PANCREAS	MDN1--CNR1	3	6	MDN1	54026	chr6:90409320:-	CNR1	108466	chr6:88855056:-	ONLY_REF_SPLICE	YES	26	12	0.26	0.43	0.032	0.0641	MDN1->chr6:90352218-90529442:-,midasin_AAA_ATPase_1,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HUPT3_PANCREAS	0.26	0.43	0.0961	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MDN1--CNR1	2	8	MDN1	54026	chr6:90409320:-	CNR1	107295	chr6:88857525:-	ONLY_REF_SPLICE	YES	26	7	0.28	0.59	0.0214	0.0854	MDN1->chr6:90352218-90529442:-,midasin_AAA_ATPase_1,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HUPT3_PANCREAS	0.28	0.59	0.1068	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MRC2--LRRC37A3	1	12	MRC2	1520	chr17:60705281:+	LRRC37A3	38399	chr17:62865284:-	ONLY_REF_SPLICE	YES	40	18	0.25	0.42	0.0107	0.1281	{Klijn_CCL:Pancreas=1},MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	HUPT3_PANCREAS	0.25	0.42	0.1388	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	ASAP2--RP11-734K21.2	2	7	ASAP2	3685	chr2:9437574:+	RP11-734K21.2	36374	chr2:9245125:+	ONLY_REF_SPLICE	YES	75	34	0.11	0.21	0.0214	0.0747	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-734K21.2->chr2:9243569-9245243:+	HUPT3_PANCREAS	0.11	0.21	0.0961	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	LRRC6--GSDMC	3	3	LRRC6	6051	chr8:133650181:-	GSDMC	21016	chr8:130798741:-	INCL_NON_REF_SPLICE	YES	24	4	0.2	0.6	0.032	0.032	LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6,GSDMC->chr8:130760442-130799134:-,gasdermin_C	HUPT3_PANCREAS	0.2	0.6	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	SYNRG--RP1-66C13.4	3	3	SYNRG	17592	chr17:35921297:-	RP1-66C13.4	42152	chr17:26131370:-	INCL_NON_REF_SPLICE	YES	25	0	0.19	1	0.032	0.032	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,RP1-66C13.4->chr17:26125832-26220391:-	HUPT3_PANCREAS	0.19	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	SYNRG--RP1-66C13.4	2	3	SYNRG	17592	chr17:35921297:-	RP1-66C13.4	42155	chr17:26131367:-	ONLY_REF_SPLICE	YES	25	0	0.17	1	0.0214	0.032	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,RP1-66C13.4->chr17:26125832-26220391:-	HUPT3_PANCREAS	0.17	1	0.0534	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MAP3K3--LRRC37A3	1	6	MAP3K3	1349	chr17:61700123:+	LRRC37A3	38711	chr17:62864654:-	ONLY_REF_SPLICE	YES	1	15	0.88	0.32	0.0107	0.0641	{Klijn_CCL:Pancreas=1},MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	HUPT3_PANCREAS	0.32	0.88	0.0748	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	CORO1C--PPP1CC	2	0	CORO1C	10072	chr12:109052514:-	PPP1CC	30711	chr12:111162569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C,PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma	HUPT3_PANCREAS	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	IKBKAP--MTG2	2	0	IKBKAP	19712	chr9:111662102:-	MTG2	43231	chr20:60770858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein,MTG2->chr20:60758085-60778624:+,mitochondrial_ribosome_associated_GTPase_2	HUPT3_PANCREAS	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	SETD3--CNN3	2	0	SETD3	1152	chr14:99947065:-	CNN3	26132	chr1:95369080:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CNN3->calponin_3,chr1:95362507-95392834:-	HUPT3_PANCREAS	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	SF1--MAPK9	2	0	SF1	3289	chr11:64543970:-	MAPK9	18572	chr5:179707608:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,MAPK9->Oncogene{Bushman},chr5:179660143-179719099:-,mitogen-activated_protein_kinase_9	HUPT3_PANCREAS	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	TANC2--ERN1	2	0	TANC2	3215	chr17:61176607:+	ERN1	62120	chr17:62142647:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1	HUPT3_PANCREAS	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	SUPT3H--CYP39A1	1	1	SUPT3H	2744	chr6:45332938:-	CYP39A1	29187	chr6:46593245:-	ONLY_REF_SPLICE	YES	16	2	0.11	0.5	0.0107	0.0107	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1	HUPT3_PANCREAS	0.11	0.5	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000118
NCIH196_LUNG	COL1A1--COL12A1	191	7	COL1A1	12984	chr17:48266791:-	COL12A1	80399	chr6:75797412:-	INCL_NON_REF_SPLICE	YES	7109	882	0.03	0.18	2.6116	0.0957	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	NCIH196_LUNG	0.03	0.18	2.7073	TRUE	0	5	0	2	5	TRUE	ACH-000752
NCIH196_LUNG	RECQL--FGF23	114	84	RECQL	2561	chr12:21652489:-	FGF23	20475	chr12:4481863:-	ONLY_REF_SPLICE	YES	111	0	0.64	1	1.5587	1.1485	{Klijn_CCL:Lung=1},RECQL->Oncogene{Bushman},RecQ_like_helicase,chr12:21621845-21654603:-,FGF23->ArcherDX_panel,FoundationOne_panel,chr12:4477393-4488894:-,fibroblast_growth_factor_23	NCIH196_LUNG	0.64	1	2.7072	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	COL1A1--COL12A1	61	7	COL1A1	12975	chr17:48266800:-	COL12A1	80399	chr6:75797412:-	INCL_NON_REF_SPLICE	YES	7400	882	0.01	0.07	0.8341	0.0957	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	NCIH196_LUNG	0.01	0.07	0.9298	TRUE	0	5	0	2	5	TRUE	ACH-000752
NCIH196_LUNG	XXbac-BPG252P9.9--IFI27	11	12	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	4909	3	0	0.88	0.1504	0.1641	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	NCIH196_LUNG	0	0.88	0.3145	TRUE	0	2	0	13	2	TRUE	ACH-000752
NCIH196_LUNG	FAM208B--NET1	11	10	FAM208B	24623	chr10:5791990:+	NET1	40326	chr10:5493793:+	ONLY_REF_SPLICE	YES	81	60	0.21	0.26	0.1504	0.1367	{Klijn_CCL:Lung=1},FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,NET1->Oncogene{Bushman},chr10:5454514-5500426:+,neuroepithelial_cell_transforming_1	NCIH196_LUNG	0.21	0.26	0.2871	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	COL1A1--COL12A1	11	7	COL1A1	13148	chr17:48266627:-	COL12A1	80390	chr6:75797421:-	INCL_NON_REF_SPLICE	YES	7815	815	0	0.02	0.1504	0.0957	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	NCIH196_LUNG	0	0.02	0.2461	TRUE	0	5	0	2	5	TRUE	ACH-000752
NCIH196_LUNG	CEP112--RP11-798G7.6	8	4	CEP112	33902	chr17:63746780:-	RP11-798G7.6	44875	chr17:43623171:+	ONLY_REF_SPLICE	YES	11	0	0.52	1	0.1094	0.0547	CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,RP11-798G7.6->chr17:43623170-43640596:+	NCIH196_LUNG	0.52	1	0.1641	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	COL1A1--COL12A1	3	7	COL1A1	13458	chr17:48266317:-	COL12A1	80399	chr6:75797412:-	INCL_NON_REF_SPLICE	YES	6659	882	0	0.01	0.041	0.0957	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	NCIH196_LUNG	0	0.01	0.1367	TRUE	0	5	0	2	5	TRUE	ACH-000752
NCIH196_LUNG	XXbac-BPG252P9.9--IFI27	3	7	XXbac-BPG252P9.9	1221	chr6:30691434:-	IFI27	7882	chr14:94578049:+	INCL_NON_REF_SPLICE	YES	4534	1080	0	0.01	0.041	0.0957	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	NCIH196_LUNG	0	0.01	0.1367	TRUE	0	2	0	13	2	TRUE	ACH-000752
NCIH196_LUNG	VIM--PPIA	4	0	VIM	2122	chr10:17271379:+	PPIA	12215	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	VIM->chr10:17270258-17279592:+,vimentin,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	NCIH196_LUNG	1	1	0.0547	TRUE	0	0	0	6	0	TRUE	ACH-000752
NCIH196_LUNG	VIM--TGFB1	3	0	VIM	2121	chr10:17271378:+	TGFB1	12716	chr19:41859305:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	GTEx&tcga_normals:2/3694=0.05%,VIM->chr10:17270258-17279592:+,vimentin,TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1	NCIH196_LUNG	1	1	0.041	TRUE	0	0	0	2	0	TRUE	ACH-000752
NCIH196_LUNG	CXorf23--RPS6KA3	2	1	CXorf23	10083	chrX:19953927:-	RPS6KA3	27661	chrX:20252932:-	ONLY_REF_SPLICE	YES	33	6	0.08	0.33	0.0273	0.0137	CXorf23->chrX:19930978-19988416:-,chromosome_X_open_reading_frame_23,RPS6KA3->chrX:20168029-20285523:-,ribosomal_protein_S6_kinase_A3	NCIH196_LUNG	0.08	0.33	0.041	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	FAM101B--DAZ2	2	0	FAM101B	1104	chr17:295627:-	DAZ2	34677	chrY:25431585:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B,DAZ2->chrY:25365594-25437503:+,deleted_in_azoospermia_2	NCIH196_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	FUT8--POLR3F	2	0	FUT8	15359	chr14:66096324:+	POLR3F	31918	chr20:18453486:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,POLR3F->chr20:18447771-18465287:+,polymerase_(RNA)_III_subunit_F	NCIH196_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	MIOS--COL28A1	2	0	MIOS	5013	chr7:7613827:+	COL28A1	35925	chr7:7516811:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	LOCAL_INVERSION:+:-:[31019],MIOS->chr7:7606503-7648560:+,missing_oocyte,_meiosis_regulator,_homolog_(Drosophila),COL28A1->Oncogene{Bushman},chr7:7395834-7575484:-,collagen_type_XXVIII_alpha_1	NCIH196_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	SUCO--NUDT19	2	0	SUCO	2149	chr1:172502637:+	NUDT19	32946	chr19:33200091:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	SUCO->SUN_domain_containing_ossification_factor,chr1:172501489-172580971:+,NUDT19->chr19:33182867-33204702:+,nudix_hydrolase_19	NCIH196_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000752
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPIA--IGKV2-14	391	264	RPIA	3457	chr2:88999582:+	IGKV2-14	14100	chr2:89377826:-	INCL_NON_REF_SPLICE	YES	115	0	0.85	1	4.3071	2.9081	RPIA->chr2:88991162-89050452:+,ribose_5-phosphate_isomerase_A,IGKV2-14->chr2:89377506-89378280:-,immunoglobulin_kappa_variable_2-14_(pseudogene)	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	7.2152	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--ZNF384	239	57	FAM60A	2035	chr12:31478958:-	ZNF384	21334	chr12:6788691:-	ONLY_REF_SPLICE	YES	83	57	0.78	0.84	2.6327	0.6279	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,ZNF384->Oncogene{Bushman},chr12:6775643-6798738:-,zinc_finger_protein_384	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.84	3.2606	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WHSC1--IGH@	180	188	WHSC1	7864	chr4:1902978:+	IGH@	163957	chr14:106111126:-	INCL_NON_REF_SPLICE	YES	50	14	0.88	0.96	1.9828	2.0709	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,IGH@->Oncogene{Bushman}	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.96	4.0537	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	161	64	IGH@	94353	chr14:106330425:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	2	52	0.99	0.81	1.7735	0.705	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.99	2.4785	TRUE	0	0	0	3	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	146	67	IGH@	94754	chr14:106330024:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	0	52	1	0.8	1.6083	0.738	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	2.3463	TRUE	0	0	0	3	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WHSC1--IGH@	56	188	WHSC1	7864	chr4:1902978:+	IGH@	155043	chr14:106209407:-	INCL_NON_REF_SPLICE	YES	50	3	0.83	0.99	0.6169	2.0709	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,IGH@->Oncogene{Bushman}	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.99	2.6878	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KDM4C--UHRF2	78	49	KDM4C	2698	chr9:6758203:+	UHRF2	49969	chr9:6460573:+	ONLY_REF_SPLICE	YES	40	133	0.76	0.49	0.8592	0.5398	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,UHRF2->Oncogene{Bushman},chr9:6413151-6507054:+,ubiquitin_like_with_PHD_and_ring_finger_domains_2	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.76	1.399	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	54	81	IGH@	95370	chr14:106329408:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	0	52	1	0.72	0.5948	0.8923	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	1	1.4871	TRUE	0	0	0	3	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	44	64	IGH@	93161	chr14:106331617:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	5	52	0.96	0.68	0.4847	0.705	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.96	1.1897	TRUE	0	0	0	3	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPIA--IGKV2-14	7	156	RPIA	2401	chr2:88998062:+	IGKV2-14	14100	chr2:89377826:-	INCL_NON_REF_SPLICE	YES	96	0	0.63	1	0.0771	1.7184	RPIA->chr2:88991162-89050452:+,ribose_5-phosphate_isomerase_A,IGKV2-14->chr2:89377506-89378280:-,immunoglobulin_kappa_variable_2-14_(pseudogene)	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	1	1.7955	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--ZNF384	10	57	FAM60A	2035	chr12:31478958:-	ZNF384	21338	chr12:6788687:-	ONLY_REF_SPLICE	YES	83	54	0.45	0.55	0.1102	0.6279	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,ZNF384->Oncogene{Bushman},chr12:6775643-6798738:-,zinc_finger_protein_384	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.55	0.7381	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--ZNF384	7	64	FAM60A	4052	chr12:31476878:-	ZNF384	21334	chr12:6788691:-	ONLY_REF_SPLICE	YES	115	57	0.38	0.55	0.0771	0.705	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,ZNF384->Oncogene{Bushman},chr12:6775643-6798738:-,zinc_finger_protein_384	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.55	0.7821	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--ZNF384	1	61	FAM60A	2833	chr12:31478160:-	ZNF384	21334	chr12:6788691:-	ONLY_REF_SPLICE	YES	101	57	0.38	0.52	0.011	0.6719	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,ZNF384->Oncogene{Bushman},chr12:6775643-6798738:-,zinc_finger_protein_384	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.52	0.6829	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMA3--KIAA0391	13	9	PSMA3	6638	chr14:58727738:+	KIAA0391	27508	chr14:35777200:+	ONLY_REF_SPLICE	YES	313	1	0.07	0.96	0.1432	0.0991	PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.96	0.2423	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC093642.5--GARNL3	6	9	AC093642.5	6865	chr2:243064606:+	GARNL3	22176	chr9:130053447:+	ONLY_REF_SPLICE	YES	0	12	1	0.56	0.0661	0.0991	AC093642.5->chr2:243030784-243102304:+,GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.1652	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KDM4C--UHRF2	5	13	KDM4C	2698	chr9:6758203:+	UHRF2	51188	chr9:6475391:+	ONLY_REF_SPLICE	YES	40	198	0.31	0.08	0.0551	0.1432	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,UHRF2->Oncogene{Bushman},chr9:6413151-6507054:+,ubiquitin_like_with_PHD_and_ring_finger_domains_2	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.31	0.1983	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRINA--RPS10	4	0	GRINA	2301	chr8:145065526:+	RPS10	7415	chr6:34393846:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	GRINA->chr8:145064226-145067583:+,glutamate_ionotropic_receptor_NMDA_type_subunit_associated_protein_1,RPS10->chr6:34385231-34393902:-,ribosomal_protein_S10	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0441	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC093642.5--GARNL3	2	2	AC093642.5	2310	chr2:243037178:+	GARNL3	22176	chr9:130053447:+	ONLY_REF_SPLICE	YES	6	12	0.4	0.25	0.022	0.022	AC093642.5->chr2:243030784-243102304:+,GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.4	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGEF38--PPA2	2	0	ARHGEF38	1342	chr4:106474118:+	PPA2	43786	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=2;pct=0.02%;dist=Small_Intestine_-_Terminal_Ileum=1,Pancreas=1},LOCAL_INVERSION:+:-:[78539],ARHGEF38->Rho_guanine_nucleotide_exchange_factor_38,chr4:106473777-106629250:+,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	8	0	1	1	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf63--NFIL3	2	0	C1orf63	8720	chr1:25594231:-	NFIL3	21051	chr9:94173188:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,NFIL3->chr9:94171327-94186144:-,nuclear_factor,_interleukin_3_regulated	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAMK2D--CBFA2T2	2	0	CAMK2D	3019	chr4:114680476:-	CBFA2T2	39612	chr20:32194762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	CAMK2D->Oncogene{Bushman},calcium/calmodulin_dependent_protein_kinase_II_delta,chr4:114372188-114683083:-,CBFA2T2->CBFA2/RUNX1_translocation_partner_2,chr20:32077881-32237842:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PET112--LINC01021	2	0	PET112	13991	chr4:152625003:-	LINC01021	37947	chr5:27496056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PET112->chr4:152591656-152682175:-,LINC01021->chr5:27472399-27496508:+,long_intergenic_non-protein_coding_RNA_1021	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PGK1--SH3BGRL	2	0	PGK1	1085	chrX:77320769:+	SH3BGRL	21962	chrX:80532483:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1,SH3BGRL->SH3_domain_binding_glutamate_rich_protein_like,chrX:80457442-80554046:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD5--PHF15	2	0	SMAD5	1118	chr5:135468651:+	PHF15	26093	chr5:133871548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SMAD5->SMAD_family_member_5,chr5:135468534-135524435:+,PHF15->chr5:133860003-133918918:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF19--SHPK	1	1	ZNF19	2256	chr16:71580180:-	SHPK	32476	chr17:3495677:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.011	0.011	ZNF19->chr16:71498453-71598992:-,zinc_finger_protein_19,SHPK->chr17:3468738-3539543:-,chr17:3511556-3539616:-,sedoheptulokinase	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000658
KYSE180_OESOPHAGUS	RDH10--PSTPIP2	44	0	RDH10	9049	chr8:74236120:+	PSTPIP2	29968	chr18:43563894:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4405	0	RDH10->chr8:74206847-74237516:+,retinol_dehydrogenase_10_(all-trans),PSTPIP2->chr18:43563502-43652238:-,proline-serine-threonine_phosphatase_interacting_protein_2	KYSE180_OESOPHAGUS	1	1	0.4405	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	ZNF555--RP11-148B18.3	31	2	ZNF555	1141	chr19:2841573:+	RP11-148B18.3	15082	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3103	0.02	ZNF555->chr19:2841433-2860482:+,zinc_finger_protein_555,RP11-148B18.3->chr1:94798823-94800404:+	KYSE180_OESOPHAGUS	1	1	0.3303	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	SMURF1--KPNA7	24	7	SMURF1	1375	chr7:98741349:-	KPNA7	35614	chr7:98782785:-	ONLY_REF_SPLICE	YES	31	2	0.5	0.94	0.2403	0.0701	LOCAL_REARRANGEMENT:-:[29474],SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	KYSE180_OESOPHAGUS	0.5	0.94	0.3104	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	CTD-3006G17.2--SLC7A7	16	24	CTD-3006G17.2	3490	chr14:28142235:-	SLC7A7	22419	chr14:23249260:-	ONLY_REF_SPLICE	YES	7	1	0.85	0.98	0.1602	0.2403	CTD-3006G17.2->chr14:27727923-28314492:-,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	KYSE180_OESOPHAGUS	0.85	0.98	0.4005	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RP11-385J1.2--KCNMB2	12	19	RP11-385J1.2	1917	chr3:178577277:-	KCNMB2	20856	chr3:178525131:+	ONLY_REF_SPLICE	YES	109	0	0.22	1	0.1201	0.1902	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	KYSE180_OESOPHAGUS	0.22	1	0.3103	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RP11-385J1.2--KCNMB2	3	23	RP11-385J1.2	2989	chr3:178559333:-	KCNMB2	20856	chr3:178525131:+	ONLY_REF_SPLICE	YES	110	0	0.19	1	0.03	0.2303	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	KYSE180_OESOPHAGUS	0.19	1	0.2603	TRUE	0	1	0	1	1	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RPS6KA5--ZBP1	7	4	RPS6KA5	5050	chr14:91444650:-	ZBP1	30244	chr20:56190636:-	ONLY_REF_SPLICE	YES	27	1	0.29	0.92	0.0701	0.04	{Klijn_CCL:Head-Neck=1},RPS6KA5->chr14:91336799-91526980:-,ribosomal_protein_S6_kinase_A5,ZBP1->Z-DNA_binding_protein_1,chr20:56178902-56195632:-	KYSE180_OESOPHAGUS	0.29	0.92	0.1101	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	FNDC3B--RP11-298O21.3	6	2	FNDC3B	14849	chr3:171969331:+	RP11-298O21.3	49350	chr3:167584675:-	ONLY_REF_SPLICE	YES	87	0	0.08	1	0.0601	0.02	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,RP11-298O21.3->chr3:167584288-167588765:-	KYSE180_OESOPHAGUS	0.08	1	0.0801	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RPS6KA5--ZBP1	3	7	RPS6KA5	5050	chr14:91444650:-	ZBP1	29356	chr20:56191524:-	ONLY_REF_SPLICE	YES	27	0	0.27	1	0.03	0.0701	{Klijn_CCL:Head-Neck=1},RPS6KA5->chr14:91336799-91526980:-,ribosomal_protein_S6_kinase_A5,ZBP1->Z-DNA_binding_protein_1,chr20:56178902-56195632:-	KYSE180_OESOPHAGUS	0.27	1	0.1001	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	C15orf41--RP11-814P5.1	4	0	C15orf41	9789	chr15:36950106:+	RP11-814P5.1	31728	chr15:35069472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.04	0	C15orf41->chr15:36871812-37102449:+,chromosome_15_open_reading_frame_41,RP11-814P5.1->chr15:35047285-35105124:+	KYSE180_OESOPHAGUS	1	1	0.04	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	CTD-3006G17.2--SLC7A7	1	10	CTD-3006G17.2	3490	chr14:28142235:-	SLC7A7	23533	chr14:23248146:-	ONLY_REF_SPLICE	YES	7	6	0.61	0.65	0.01	0.1001	CTD-3006G17.2->chr14:27727923-28314492:-,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	KYSE180_OESOPHAGUS	0.61	0.65	0.1101	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	GOLIM4--NAALADL2	2	5	GOLIM4	1877	chr3:167812887:-	NAALADL2	32647	chr3:174455431:+	ONLY_REF_SPLICE	YES	111	0	0.06	1	0.02	0.0501	GOLIM4->chr3:167726465-167813763:-,golgi_integral_membrane_protein_4,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	KYSE180_OESOPHAGUS	0.06	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RP11-385J1.2--KCNMB2	1	9	RP11-385J1.2	1917	chr3:178577277:-	KCNMB2	24210	chr3:178543376:+	ONLY_REF_SPLICE	YES	109	2	0.08	0.83	0.01	0.0901	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	KYSE180_OESOPHAGUS	0.08	0.83	0.1001	TRUE	0	0	0	2	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RP11-385J1.2--KCNMB2	1	8	RP11-385J1.2	2989	chr3:178559333:-	KCNMB2	26577	chr3:178560441:+	ONLY_REF_SPLICE	YES	110	6	0.08	0.6	0.01	0.0801	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	KYSE180_OESOPHAGUS	0.08	0.6	0.0901	TRUE	0	1	0	1	1	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RP11-385J1.2--KCNMB2	1	5	RP11-385J1.2	1917	chr3:178577277:-	KCNMB2	26577	chr3:178560441:+	ONLY_REF_SPLICE	YES	109	6	0.05	0.5	0.01	0.0501	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	KYSE180_OESOPHAGUS	0.05	0.5	0.0601	TRUE	0	2	0	1	2	TRUE	ACH-000693
KYSE180_OESOPHAGUS	CCAT1--PVT1	2	0	CCAT1	1279	chr8:128231055:-	PVT1	28652	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	1	0	2	1	TRUE	ACH-000693
KYSE180_OESOPHAGUS	CCZ1--ATP2A2	2	0	CCZ1	1195	chr7:5938550:+	ATP2A2	21998	chr12:110729825:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	CCZ1->CCZ1_homolog,_vacuolar_protein_trafficking_and_biogenesis_associated,chr7:5938356-5965605:+,ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	CNIH1--KTN1	2	0	CNIH1	1185	chr14:54907965:-	KTN1	14667	chr14:56078737:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	CNIH1->chr14:54893654-54908149:-,cornichon_family_AMPA_receptor_auxiliary_protein_1,KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	CPSF6--PPP6R2	2	0	CPSF6	11046	chr12:69656342:+	PPP6R2	26977	chr22:50852981:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	CSRP2BP--TOMM34	2	0	CSRP2BP	3099	chr20:18123563:+	TOMM34	22092	chr20:43577518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	CSRP2BP->Oncogene{Bushman},chr20:18118762-18169031:+,TOMM34->chr20:43570771-43589127:-,translocase_of_outer_mitochondrial_membrane_34	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	DNAJA1--DYNLT1	2	0	DNAJA1	7577	chr9:33037113:+	DYNLT1	16546	chr6:159058926:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	EIF4A2--TANGO6	2	0	EIF4A2	1435	chr3:186501428:+	TANGO6	31052	chr16:69007931:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	FUBP1--SNRNP48	2	0	FUBP1	14090	chr1:78414840:-	SNRNP48	27201	chr6:7601569:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,SNRNP48->chr6:7590432-7612200:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_48	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	GREB1L--RP11-408H20.2	2	0	GREB1L	5424	chr18:18964364:+	RP11-408H20.2	48962	chr18:28742498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GREB1L->chr18:18822203-19105378:+,growth_regulation_by_estrogen_in_breast_cancer-like,RP11-408H20.2->chr18:28681551-28742752:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	HIBADH--NQO2	2	0	HIBADH	1298	chr7:27702317:-	NQO2	28863	chr6:3019713:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	HIF1A--PRKCH	2	0	HIF1A	1327	chr14:62162557:+	PRKCH	48659	chr14:61952220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	1	15	1	9	1	TRUE	ACH-000693
KYSE180_OESOPHAGUS	KLHL18--CSDE1	2	0	KLHL18	7000	chr3:47371639:+	CSDE1	29804	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	KLHL18->chr3:47324407-47388306:+,kelch_like_family_member_18,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	NGDN--PCNX	2	0	NGDN	6312	chr14:23946769:+	PCNX	27244	chr14:71478209:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	NGDN->chr14:23938897-23979071:+,neuroguidin,PCNX->chr14:71374122-71582099:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	NME2--MIR205HG	2	0	NME2	7432	chr17:49245704:+	MIR205HG	13165	chr1:209602526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	NME2->NME/NM23_nucleoside_diphosphate_kinase_2,chr17:49230951-49249105:+,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	NSD1--EIF4A1	2	0	NSD1	7689	chr5:176631293:+	EIF4A1	47226	chr17:7478437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	NUDT5--RPL30	2	0	NUDT5	1375	chr10:12237769:-	RPL30	21946	chr8:99055003:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	NUDT5->chr10:12207324-12238143:-,nudix_hydrolase_5,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	PCSK6--IGF1R	2	0	PCSK6	3840	chr15:101983761:-	IGF1R	48245	chr15:99439986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	PCSK6->chr15:101840818-102065405:-,proprotein_convertase_subtilisin/kexin_type_6,IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	PPIP5K2--NDUFS8	2	0	PPIP5K2	1340	chr5:102456192:+	NDUFS8	51940	chr11:67800390:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	PPIP5K2->chr5:102455853-102548500:+,diphosphoinositol_pentakisphosphate_kinase_2,NDUFS8->NADH:ubiquinone_oxidoreductase_core_subunit_S8,chr11:67798084-67804111:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	PRRC2A--SNX5	2	0	PRRC2A	2351	chr6:31590678:+	SNX5	23381	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	PTS--ZNF274	2	0	PTS	2563	chr11:112099396:+	ZNF274	16941	chr19:58698314:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	PTS->6-pyruvoyltetrahydropterin_synthase,chr11:112097088-112140678:+,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RARA--INTS1	2	0	RARA	6149	chr17:38487648:+	INTS1	34936	chr7:1527593:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,INTS1->chr7:1509913-1545489:-,integrator_complex_subunit_1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RPS7--RP11-296I10.6	2	0	RPS7	2426	chr2:3624220:+	RP11-296I10.6	18631	chr16:70263795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	RPS7->chr2:3622795-3628509:+,ribosomal_protein_S7,RP11-296I10.6->chr16:70253477-70279519:-	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	TAF9--APLP2	2	0	TAF9	1357	chr5:68665484:-	APLP2	18296	chr11:129979324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	TDP1--TJP1	2	0	TDP1	18365	chr14:90455434:+	TJP1	35878	chr15:30092905:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	TDP1->chr14:90421283-90511106:+,tyrosyl-DNA_phosphodiesterase_1,TJP1->chr15:29991571-30261068:-,tight_junction_protein_1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	TSHZ2--NFYB	2	0	TSHZ2	1927	chr20:51589872:+	NFYB	21497	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	TSHZ2->chr20:51588946-52111869:+,teashirt_zinc_finger_homeobox_2,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	TUBB6--NUDT2	2	0	TUBB6	3238	chr18:12311052:+	NUDT2	18068	chr9:34343122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	TUBB6->chr18:12307668-12344319:+,tubulin_beta_6_class_V,NUDT2->chr9:34329504-34343709:+,nudix_hydrolase_2	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	UBA5--RP11-848P1.9	2	0	UBA5	3458	chr3:132379542:+	RP11-848P1.9	28060	chr17:29372428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	UBA5->chr3:132373290-132396941:+,ubiquitin_like_modifier_activating_enzyme_5,RP11-848P1.9->chr17:29335515-29420145:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	UFSP2--VEGFC	2	0	UFSP2	10404	chr4:186324648:-	VEGFC	17990	chr4:177650900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	UFSP2->UFM1-specific_peptidase_2,chr4:186320694-186347139:-,VEGFC->chr4:177604689-177713881:-,vascular_endothelial_growth_factor_C	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	UGGT2--FRA10AC1	2	0	UGGT2	5306	chr13:96665561:-	FRA10AC1	55520	chr10:95447206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	UGGT2->UDP-glucose_glycoprotein_glucosyltransferase_2,chr13:96453834-96705736:-,FRA10AC1->chr10:95427640-95462329:-,fragile_site,_folic_acid_type,_rare,_fra(10)(q23.3)_or_fra(10)(q24.2)_candidate_1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	USP13--FXR1	2	0	USP13	11437	chr3:179448497:+	FXR1	38670	chr3:180651122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},USP13->chr3:179370543-179507189:+,ubiquitin_specific_peptidase_13_(isopeptidase_T-3),FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	ZNF786--ATP6V0E2-AS1	2	0	ZNF786	3610	chr7:148777683:-	ATP6V0E2-AS1	14459	chr7:149568885:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	ZNF786->chr7:148766735-148787874:-,zinc_finger_protein_786,ATP6V0E2-AS1->ATP6V0E2_antisense_RNA_1,chr7:149564786-149577699:-	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	ZNFX1--TCP1	2	0	ZNFX1	16406	chr20:47868064:-	TCP1	35969	chr6:160201119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	ZNFX1->chr20:47854483-47894963:-,zinc_finger_NFX1-type_containing_1,TCP1->chr6:160199530-160210781:-,t-complex_1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RP11-20I20.2--CTBP1	1	1	RP11-20I20.2	1114	chr4:1107540:+	CTBP1	8481	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	21	1	0.09	0.01	0.01	LOCAL_INVERSION:+:-:[78471],RP11-20I20.2->chr4:1107427-1126765:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	KYSE180_OESOPHAGUS	0.09	1	0.02	TRUE	0	1	1	6	1	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RP11-385J1.2--KCNMB2	1	1	RP11-385J1.2	1112	chr3:178578082:-	KCNMB2	20856	chr3:178525131:+	ONLY_REF_SPLICE	NO	5	0	0.29	1	0.01	0.01	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	KYSE180_OESOPHAGUS	0.29	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
SNU738_CENTRAL_NERVOUS_SYSTEM	NCOA3--EYA2	466	246	NCOA3	8220	chr20:46256767:+	EYA2	46927	chr20:45808446:+	ONLY_REF_SPLICE	YES	131	0	0.84	1	4.748	2.5065	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.84	1	7.2545	TRUE	0	0	0	2	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MLLT10--RP11-168O10.6	265	109	MLLT10	1640	chr10:21823733:+	RP11-168O10.6	38031	chr10:91222272:+	ONLY_REF_SPLICE	YES	85	4	0.81	0.99	2.7001	1.1106	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,RP11-168O10.6->chr10:91215821-91227897:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.81	0.99	3.8107	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	SYMPK--CEACAMP1	244	79	SYMPK	16165	chr19:46333312:-	CEACAMP1	37611	chr19:43124455:-	INCL_NON_REF_SPLICE	YES	163	2	0.66	0.99	2.4861	0.8049	SYMPK->chr19:46318668-46366548:-,symplekin,CEACAMP1->carcinoembryonic_antigen_related_cell_adhesion_molecule_pseudogene_1,chr19:43124364-43137186:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.66	0.99	3.291	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CMIP--RP11-398K22.12	135	82	CMIP	1372	chr16:81479146:+	RP11-398K22.12	44998	chr6:74008780:+	ONLY_REF_SPLICE	YES	68	1	0.76	1	1.3755	0.8355	CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+,RP11-398K22.12->chr6:73972938-74011124:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.76	1	2.211	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	STK24--TBL1XR1	139	22	STK24	5361	chr13:99171497:-	TBL1XR1	28929	chr3:176816329:-	ONLY_REF_SPLICE	YES	52	10	0.76	0.94	1.4163	0.2242	STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24,TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1	SNU738_CENTRAL_NERVOUS_SYSTEM	0.76	0.94	1.6405	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DENND1A--RALGPS1	76	20	DENND1A	16714	chr9:126319849:-	RALGPS1	53550	chr9:129815126:+	ONLY_REF_SPLICE	YES	51	4	0.65	0.96	0.7744	0.2038	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.65	0.96	0.9782	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DIP2A--PCNT	66	17	DIP2A	1324	chr21:47879135:+	PCNT	80365	chr21:47847536:+	ONLY_REF_SPLICE	YES	10	10	0.89	0.89	0.6725	0.1732	GTEx_v2:{count=4;pct=0.05%;dist=Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},LOCAL_REARRANGEMENT:+:[13130],DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A,PCNT->chr21:47744036-47865682:+,pericentrin	SNU738_CENTRAL_NERVOUS_SYSTEM	0.89	0.89	0.8457	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PPP5C--ERCC1	65	19	PPP5C	12013	chr19:46891988:+	ERCC1	24045	chr19:45926639:-	ONLY_REF_SPLICE	YES	172	509	0.33	0.14	0.6623	0.1936	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1	SNU738_CENTRAL_NERVOUS_SYSTEM	0.14	0.33	0.8559	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MLLT10--RP11-168O10.6	30	129	MLLT10	1640	chr10:21823733:+	RP11-168O10.6	36852	chr10:91215827:+	INCL_NON_REF_SPLICE	YES	85	0	0.65	1	0.3057	1.3144	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,RP11-168O10.6->chr10:91215821-91227897:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.65	1	1.6201	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CTD-2162K18.5--IGFL3	51	31	CTD-2162K18.5	3025	chr19:37292835:+	IGFL3	10752	chr19:46627578:-	ONLY_REF_SPLICE	YES	29	0	0.74	1	0.5196	0.3159	CTD-2162K18.5->chr19:37288420-37319017:+,IGFL3->IGF_like_family_member_3,chr19:46623328-46627931:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.74	1	0.8355	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	HCP5--PEX14	50	1	HCP5	2219	chr6:31431056:+	PEX14	14116	chr1:10596270:+	ONLY_REF_SPLICE	YES	8	2	0.86	0.96	0.5094	0.0102	HCP5->HLA_complex_P5_(non-protein_coding),chr6:31368479-31445283:+,PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14	SNU738_CENTRAL_NERVOUS_SYSTEM	0.86	0.96	0.5196	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	HDAC6--SSX6	44	18	HDAC6	10581	chrX:48674459:+	SSX6	22689	chrX:47969867:+	ONLY_REF_SPLICE	YES	64	0	0.49	1	0.4483	0.1834	HDAC6->Oncogene{Bushman},chrX:48659784-48683392:+,histone_deacetylase_6,SSX6->chrX:47967367-47980068:+,synovial_sarcoma,_X_breakpoint_6_(pseudogene)	SNU738_CENTRAL_NERVOUS_SYSTEM	0.49	1	0.6317	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	SMAD4--RP11-267C16.1	42	18	SMAD4	14720	chr18:48581363:+	RP11-267C16.1	43939	chr18:49086963:+	ONLY_REF_SPLICE	YES	53	0	0.53	1	0.4279	0.1834	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.53	1	0.6113	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ZNF148--HEG1	39	26	ZNF148	1253	chr3:125093946:-	HEG1	43291	chr3:124696790:-	ONLY_REF_SPLICE	YES	38	326	0.63	0.17	0.3974	0.2649	ZNF148->chr3:124944405-125094198:-,zinc_finger_protein_148,HEG1->chr3:124684554-124774802:-,heart_development_protein_with_EGF_like_domains_1	SNU738_CENTRAL_NERVOUS_SYSTEM	0.17	0.63	0.6623	TRUE	0	0	0	2	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CLASRP--VASP	36	23	CLASRP	3806	chr19:45555426:+	VASP	26171	chr19:46027099:+	ONLY_REF_SPLICE	YES	223	351	0.21	0.14	0.3668	0.2343	CLASRP->CLK4_associating_serine/arginine_rich_protein,chr19:45542298-45574214:+,VASP->chr19:46009837-46030241:+,vasodilator-stimulated_phosphoprotein	SNU738_CENTRAL_NERVOUS_SYSTEM	0.14	0.21	0.6011	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DENND1A--RALGPS1	35	22	DENND1A	16714	chr9:126319849:-	RALGPS1	52460	chr9:129812322:+	ONLY_REF_SPLICE	YES	51	3	0.53	0.95	0.3566	0.2242	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.53	0.95	0.5808	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CSAD--RP11-793H13.10	37	11	CSAD	8127	chr12:53563856:-	RP11-793H13.10	29739	chr12:53901811:-	INCL_NON_REF_SPLICE	YES	10	0	0.83	1	0.377	0.1121	CSAD->chr12:53551447-53575135:-,cysteine_sulfinic_acid_decarboxylase,RP11-793H13.10->chr12:53900472-54019763:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.4891	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	SYMPK--CEACAMP1	20	79	SYMPK	16167	chr19:46333310:-	CEACAMP1	37611	chr19:43124455:-	INCL_NON_REF_SPLICE	YES	169	2	0.37	0.98	0.2038	0.8049	SYMPK->chr19:46318668-46366548:-,symplekin,CEACAMP1->carcinoembryonic_antigen_related_cell_adhesion_molecule_pseudogene_1,chr19:43124364-43137186:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.37	0.98	1.0087	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	EPB41L4B--IKBKAP	39	2	EPB41L4B	12220	chr9:112013761:-	IKBKAP	61596	chr9:111651673:-	ONLY_REF_SPLICE	YES	21	56	0.66	0.42	0.3974	0.0204	EPB41L4B->chr9:111934255-112083244:-,erythrocyte_membrane_protein_band_4.1_like_4B,IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein	SNU738_CENTRAL_NERVOUS_SYSTEM	0.42	0.66	0.4178	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PPP5C--ZNF570	31	23	PPP5C	1224	chr19:46850474:+	ZNF570	22357	chr19:37966783:+	ONLY_REF_SPLICE	YES	261	48	0.17	0.53	0.3159	0.2343	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,ZNF570->chr19:37958487-37976260:+,zinc_finger_protein_570	SNU738_CENTRAL_NERVOUS_SYSTEM	0.17	0.53	0.5502	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ZNF609--RAB11A	32	5	ZNF609	1097	chr15:64753037:+	RAB11A	32454	chr15:66169670:+	ONLY_REF_SPLICE	YES	2	431	0.95	0.08	0.326	0.0509	ZNF609->chr15:64752941-64978264:+,zinc_finger_protein_609,RAB11A->RAB11A,_member_RAS_oncogene_family,chr15:66018392-66184329:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.08	0.95	0.3769	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ENAH--PYCR2	28	20	ENAH	7034	chr1:225718256:-	PYCR2	34398	chr1:226111471:-	ONLY_REF_SPLICE	YES	195	235	0.2	0.17	0.2853	0.2038	ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila),PYCR2->chr1:226107578-226111978:-,pyrroline-5-carboxylate_reductase_family_member_2	SNU738_CENTRAL_NERVOUS_SYSTEM	0.17	0.2	0.4891	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PIK3CA--KCNMB2	28	4	PIK3CA	1490	chr3:178866391:+	KCNMB2	33886	chr3:178525131:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.2853	0.0408	PIK3CA->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr3:178865902-178957881:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_alpha,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	SNU738_CENTRAL_NERVOUS_SYSTEM	0.97	1	0.3261	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	RUSC2--IKBKAP	25	1	RUSC2	1046	chr9:35490169:+	IKBKAP	42328	chr9:111651673:-	ONLY_REF_SPLICE	YES	3	56	0.9	0.32	0.2547	0.0102	RUSC2->RUN_and_SH3_domain_containing_2,chr9:35490124-35561895:+,IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein	SNU738_CENTRAL_NERVOUS_SYSTEM	0.32	0.9	0.2649	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	OPA3--FKRP	21	16	OPA3	2338	chr19:46087881:-	FKRP	27646	chr19:47279909:+	ONLY_REF_SPLICE	YES	61	0	0.38	1	0.214	0.163	OPA3->chr19:46030685-46105470:-,optic_atrophy_3_(autosomal_recessive,_with_chorea_and_spastic_paraplegia),FKRP->chr19:47249303-47280245:+,fukutin_related_protein	SNU738_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.377	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	SMAD4--RP11-267C16.1	16	24	SMAD4	16052	chr18:48584826:+	RP11-267C16.1	43939	chr18:49086963:+	ONLY_REF_SPLICE	YES	43	0	0.48	1	0.163	0.2445	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.48	1	0.4075	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	NCOA3--EYA2	13	28	NCOA3	8220	chr20:46256767:+	EYA2	49066	chr20:45811939:+	ONLY_REF_SPLICE	YES	131	200	0.24	0.17	0.1325	0.2853	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.17	0.24	0.4178	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PPP5C--ZNF570	10	28	PPP5C	1224	chr19:46850474:+	ZNF570	21273	chr19:37961206:+	ONLY_REF_SPLICE	YES	261	45	0.13	0.46	0.1019	0.2853	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,ZNF570->chr19:37958487-37976260:+,zinc_finger_protein_570	SNU738_CENTRAL_NERVOUS_SYSTEM	0.13	0.46	0.3872	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	HCP5--PEX14	16	3	HCP5	2448	chr6:31431285:+	PEX14	14116	chr1:10596270:+	ONLY_REF_SPLICE	YES	45	2	0.3	0.9	0.163	0.0306	HCP5->HLA_complex_P5_(non-protein_coding),chr6:31368479-31445283:+,PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14	SNU738_CENTRAL_NERVOUS_SYSTEM	0.3	0.9	0.1936	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ENAH--PYCR2	12	18	ENAH	7034	chr1:225718256:-	PYCR2	35786	chr1:226110083:-	ONLY_REF_SPLICE	YES	195	209	0.13	0.13	0.1223	0.1834	ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila),PYCR2->chr1:226107578-226111978:-,pyrroline-5-carboxylate_reductase_family_member_2	SNU738_CENTRAL_NERVOUS_SYSTEM	0.13	0.13	0.3057	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CTD-2162K18.5--IGFL3	8	19	CTD-2162K18.5	1294	chr19:37288713:+	IGFL3	10752	chr19:46627578:-	ONLY_REF_SPLICE	YES	36	0	0.43	1	0.0815	0.1936	CTD-2162K18.5->chr19:37288420-37319017:+,IGFL3->IGF_like_family_member_3,chr19:46623328-46627931:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.2751	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	SYMPK--CEACAMP1	6	27	SYMPK	14835	chr19:46334642:-	CEACAMP1	37611	chr19:43124455:-	INCL_NON_REF_SPLICE	YES	529	2	0.06	0.94	0.0611	0.2751	SYMPK->chr19:46318668-46366548:-,symplekin,CEACAMP1->carcinoembryonic_antigen_related_cell_adhesion_molecule_pseudogene_1,chr19:43124364-43137186:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.06	0.94	0.3362	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CMIP--RP11-398K22.12	8	12	CMIP	1372	chr16:81479146:+	RP11-398K22.12	45194	chr6:74008976:+	INCL_NON_REF_SPLICE	YES	68	29	0.23	0.41	0.0815	0.1223	CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+,RP11-398K22.12->chr6:73972938-74011124:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.23	0.41	0.2038	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	HCP5--PEX14	9	4	HCP5	3070	chr6:31431907:+	PEX14	14116	chr1:10596270:+	INCL_NON_REF_SPLICE	YES	28	2	0.32	0.87	0.0917	0.0408	HCP5->HLA_complex_P5_(non-protein_coding),chr6:31368479-31445283:+,PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14	SNU738_CENTRAL_NERVOUS_SYSTEM	0.32	0.87	0.1325	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CEP89--ZNF573	9	0	CEP89	1156	chr19:33462742:-	ZNF573	44769	chr19:38231095:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0917	0	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PPP5C--ZNF570	2	28	PPP5C	1224	chr19:46850474:+	ZNF570	20446	chr19:37960379:+	ONLY_REF_SPLICE	YES	261	19	0.1	0.61	0.0204	0.2853	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,ZNF570->chr19:37958487-37976260:+,zinc_finger_protein_570	SNU738_CENTRAL_NERVOUS_SYSTEM	0.1	0.61	0.3057	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	TMSB10--TMSB4X	9	0	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0917	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0917	TRUE	0	1	0	17	1	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CTD-2162K18.5--IGFL3	1	31	CTD-2162K18.5	4841	chr19:37303508:+	IGFL3	10752	chr19:46627578:-	ONLY_REF_SPLICE	YES	32	0	0.5	1	0.0102	0.3159	CTD-2162K18.5->chr19:37288420-37319017:+,IGFL3->IGF_like_family_member_3,chr19:46623328-46627931:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.3261	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MBNL1--DDX19B	6	7	MBNL1	3666	chr3:151986881:+	DDX19B	33106	chr16:70348805:+	ONLY_REF_SPLICE	YES	58	175	0.18	0.07	0.0611	0.0713	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.07	0.18	0.1324	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	L3MBTL3--RP11-313P18.2	7	1	L3MBTL3	6441	chr6:130343450:+	RP11-313P18.2	33300	chr15:51987954:-	INCL_NON_REF_SPLICE	YES	6	0	0.57	1	0.0713	0.0102	L3MBTL3->chr6:130334844-130462594:+,l(3)mbt-like_3_(Drosophila),RP11-313P18.2->chr15:51985413-51987962:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.57	1	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MBNL1--DDX19B	5	8	MBNL1	3666	chr3:151986881:+	DDX19B	31960	chr16:70346512:+	ONLY_REF_SPLICE	YES	58	225	0.18	0.05	0.0509	0.0815	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.05	0.18	0.1324	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PLXNB2--MT2A	5	0	PLXNB2	4885	chr22:50728393:-	MT2A	23273	chr16:56642513:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	PLXNB2->chr22:50713408-50746056:-,plexin_B2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0509	TRUE	0	0	0	5	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DENND1A--RALGPS1	2	9	DENND1A	16714	chr9:126319849:-	RALGPS1	54643	chr9:129831509:+	ONLY_REF_SPLICE	YES	51	8	0.18	0.58	0.0204	0.0917	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.18	0.58	0.1121	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	TMSB10--TMSB4X	4	0	TMSB10	1785	chr2:85133533:+	TMSB4X	6738	chrX:12994917:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0408	TRUE	0	1	0	17	1	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	THSD4--CCDC33	3	1	THSD4	8286	chr15:71704162:+	CCDC33	55146	chr15:74622530:+	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0306	0.0102	THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,CCDC33->chr15:74509613-74628813:+,coiled-coil_domain_containing_33	SNU738_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	AGK--NDUFB2	3	0	AGK	2361	chr7:141255367:+	NDUFB2	34277	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	GTEx_FI:{Esophagus=[count:1=pct:0.2],Thyroid=[count:1=pct:0.6]},{Klijn_CCL:Lung=1,Ovary=1},AGK->acylglycerol_kinase,chr7:141250989-141355044:+,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0306	TRUE	1	5	0	3	1	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CTC-459F4.3--ERCC2	3	0	CTC-459F4.3	1188	chr19:28284558:+	ERCC2	20445	chr19:45864900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	CTC-459F4.3->chr19:28284371-28409771:+,ERCC2->Oncogene{Bushman},chr19:45853095-45874176:-,excision_repair_cross-complementation_group_2	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	EZR--NFYB	3	0	EZR	2248	chr6:159239114:-	NFYB	20332	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	EZR->chr6:159186773-159240444:-,ezrin,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PIK3CA--KCNMB2	2	4	PIK3CA	1490	chr3:178866391:+	KCNMB2	32761	chr3:178512930:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0204	0.0408	PIK3CA->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr3:178865902-178957881:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_alpha,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	SNU738_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.0612	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ZNF180--AC002115.5	2	1	ZNF180	4945	chr19:44988572:-	AC002115.5	13704	chr19:36091543:+	ONLY_REF_SPLICE	YES	70	0	0.04	1	0.0204	0.0102	ZNF180->chr19:44979854-45004576:-,zinc_finger_protein_180,AC002115.5->chr19:36088809-36092403:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	C17orf76-AS1--PTTG1	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTTG1	13683	chr5:159849309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	C17orf76-AS1->chr17:16342136-16381992:+,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CAPZA2--UBB	2	0	CAPZA2	3371	chr7:116502704:+	UBB	26491	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	5	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CSNK1G1--AP3S2	2	0	CSNK1G1	1256	chr15:64648187:-	AP3S2	36847	chr15:90380954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CSNK1G1->casein_kinase_1_gamma_1,chr15:64457716-64648442:-,AP3S2->adaptor_related_protein_complex_3_sigma_2_subunit,chr15:90373831-90437574:-	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DIP2C--ZMYND11	2	0	DIP2C	1250	chr10:735434:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	5	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	LDLR--ZNF627	2	0	LDLR	5037	chr19:11213462:+	ZNF627	35861	chr19:11727510:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,ZNF627->chr19:11670189-11729950:+,zinc_finger_protein_627	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	SPATS2--PNPT1	2	0	SPATS2	2004	chr12:49761370:+	PNPT1	43388	chr2:55889161:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,PNPT1->chr2:55861400-55921045:-,polyribonucleotide_nucleotidyltransferase_1	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	TEAD1--PARVA	2	0	TEAD1	1413	chr11:12696381:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	2	0	5	2	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	TMEM180--RP11-18I14.10	2	0	TMEM180	2166	chr10:104225844:+	RP11-18I14.10	21698	chr10:104220648:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:+:[286],TMEM180->chr10:104221149-104236802:+,RP11-18I14.10->chr10:104209574-104220863:+	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	USP10--OSER1	2	0	USP10	1134	chr16:84733717:+	OSER1	25784	chr20:42835638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	L3MBTL3--RP11-313P18.2	1	1	L3MBTL3	6441	chr6:130343450:+	RP11-313P18.2	34425	chr15:51986134:-	ONLY_REF_SPLICE	YES	6	1	0.25	0.67	0.0102	0.0102	L3MBTL3->chr6:130334844-130462594:+,l(3)mbt-like_3_(Drosophila),RP11-313P18.2->chr15:51985413-51987962:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.25	0.67	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
KMRC20_KIDNEY	RALGPS2--IGKV1OR10-1	101	22	RALGPS2	4551	chr1:178754742:+	IGKV1OR10-1	29925	chr10:42680942:+	ONLY_REF_SPLICE	YES	30	0	0.8	1	1.3879	0.3023	RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+,IGKV1OR10-1->chr10:42680787-42681239:+,immunoglobulin_kappa_variable_1/OR10-1_(pseudogene)	KMRC20_KIDNEY	0.8	1	1.6902	TRUE	0	0	0	1	0	TRUE	ACH-000250
KMRC20_KIDNEY	DNAJC2--FBXL13	20	7	DNAJC2	3582	chr7:102978183:-	FBXL13	35917	chr7:102566821:-	ONLY_REF_SPLICE	YES	117	0	0.19	1	0.2748	0.0962	DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	KMRC20_KIDNEY	0.19	1	0.371	TRUE	0	0	0	1	0	TRUE	ACH-000250
KMRC20_KIDNEY	ECI1--ZNF598	2	0	ECI1	3113	chr16:2296860:-	ZNF598	12303	chr16:2053729:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	ECI1->chr16:2289396-2302301:-,enoyl-CoA_delta_isomerase_1,ZNF598->chr16:2047655-2059824:-,zinc_finger_protein_598	KMRC20_KIDNEY	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000250
KMRC20_KIDNEY	RP11-499O7.7--AKR1C1	2	0	RP11-499O7.7	1180	chr10:5037859:+	AKR1C1	18551	chr10:5014393:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[12205],RP11-499O7.7->chr10:5037680-5039572:+,AKR1C1->aldo-keto_reductase_family_1,_member_C1,chr10:4934796-5025475:+	KMRC20_KIDNEY	1	1	0.0275	TRUE	0	2	0	1	0	TRUE	ACH-000250
KMRC20_KIDNEY	SNAPC1--PRKCH	2	0	SNAPC1	7963	chr14:62249115:+	PRKCH	17944	chr14:61766429:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	SNAPC1->chr14:62229075-62263146:+,small_nuclear_RNA_activating_complex_polypeptide_1,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	KMRC20_KIDNEY	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000250
EPLC272H_LUNG	TLK2--CBX2	98	3	TLK2	31754	chr17:60683602:+	CBX2	41629	chr17:77753161:+	ONLY_REF_SPLICE	YES	47	12	0.68	0.89	0.7798	0.0239	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,CBX2->chr17:77751931-77761782:+,chromobox_2	EPLC272H_LUNG	0.68	0.89	0.8037	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ME1--SNAP91	79	22	ME1	5724	chr6:84055892:-	SNAP91	54275	chr6:84264004:-	ONLY_REF_SPLICE	YES	29	0	0.78	1	0.6286	0.1751	ME1->chr6:83920108-84140797:-,malic_enzyme_1,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	EPLC272H_LUNG	0.78	1	0.8037	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	SLFN11--NUFIP2	74	8	SLFN11	1228	chr17:33700493:-	NUFIP2	18240	chr17:27594548:-	ONLY_REF_SPLICE	YES	41	92	0.67	0.47	0.5889	0.0637	SLFN11->chr17:33677324-33700720:-,schlafen_family_member_11,NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2	EPLC272H_LUNG	0.47	0.67	0.6526	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	TNRC18--ACTB	34	10	TNRC18	10018	chr7:5427303:-	ACTB	45979	chr7:5569294:-	ONLY_REF_SPLICE	YES	67	156	0.4	0.22	0.2706	0.0796	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Colon_-_Sigmoid=1},TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	EPLC272H_LUNG	0.22	0.4	0.3502	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	C17orf85--PPM1E	26	9	C17orf85	14103	chr17:3717616:-	PPM1E	21811	chr17:57033010:+	ONLY_REF_SPLICE	YES	73	1	0.32	0.97	0.2069	0.0716	{Klijn_CCL:Lung=1},C17orf85->chr17:3714460-3749545:-,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	EPLC272H_LUNG	0.32	0.97	0.2785	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	MSI2--FOXK2	23	11	MSI2	17645	chr17:55478832:+	FOXK2	58781	chr17:80543780:+	ONLY_REF_SPLICE	YES	21	109	0.62	0.24	0.183	0.0875	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	EPLC272H_LUNG	0.24	0.62	0.2705	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	TANC2--MGAT5B	18	8	TANC2	22474	chr17:61432751:+	MGAT5B	66070	chr17:74934070:+	ONLY_REF_SPLICE	YES	29	16	0.47	0.62	0.1432	0.0637	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,MGAT5B->chr17:74864538-74946475:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,_isozyme_B	EPLC272H_LUNG	0.47	0.62	0.2069	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	CUX1--C1orf168	14	4	CUX1	6304	chr7:101559505:+	C1orf168	77107	chr1:57192256:-	ONLY_REF_SPLICE	YES	295	0	0.06	1	0.1114	0.0318	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,C1orf168->chr1:57184477-57285369:-,chromosome_1_open_reading_frame_168	EPLC272H_LUNG	0.06	1	0.1432	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	PITPNC1--SGSH	12	2	PITPNC1	1744	chr17:65374318:+	SGSH	25027	chr17:78190991:-	ONLY_REF_SPLICE	YES	2	16	0.88	0.47	0.0955	0.0159	PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1,SGSH->N-sulfoglucosamine_sulfohydrolase,chr17:78180515-78194722:-	EPLC272H_LUNG	0.47	0.88	0.1114	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ERC1--SYCP2	10	8	ERC1	9215	chr12:1213990:+	SYCP2	55798	chr20:58486900:-	ONLY_REF_SPLICE	YES	22	0	0.45	1	0.0796	0.0637	{Klijn_CCL:Lung=1},ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,SYCP2->chr20:58438618-58508710:-,synaptonemal_complex_protein_2	EPLC272H_LUNG	0.45	1	0.1433	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ERC1--SYCP2	7	10	ERC1	9215	chr12:1213990:+	SYCP2	55225	chr20:58487473:-	ONLY_REF_SPLICE	YES	22	0	0.44	1	0.0557	0.0796	{Klijn_CCL:Lung=1},ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,SYCP2->chr20:58438618-58508710:-,synaptonemal_complex_protein_2	EPLC272H_LUNG	0.44	1	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	C17orf85--PPM1E	5	5	C17orf85	12941	chr17:3719410:-	PPM1E	21811	chr17:57033010:+	ONLY_REF_SPLICE	YES	88	1	0.1	0.91	0.0398	0.0398	{Klijn_CCL:Lung=1},C17orf85->chr17:3714460-3749545:-,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	EPLC272H_LUNG	0.1	0.91	0.0796	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	CTC1--VAT1	4	2	CTC1	2205	chr17:8146303:-	VAT1	22470	chr17:41169947:-	ONLY_REF_SPLICE	YES	12	67	0.33	0.08	0.0318	0.0159	CTC1->CTS_telomere_maintenance_complex_component_1,chr17:8130191-8151362:-,VAT1->chr17:41166622-41177140:-,vesicle_amine_transport_1	EPLC272H_LUNG	0.08	0.33	0.0477	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	TMEM182--VWA3B	4	1	TMEM182	8564	chr2:103414459:+	VWA3B	49217	chr2:98887145:+	ONLY_REF_SPLICE	YES	28	1	0.15	0.83	0.0318	0.008	TMEM182->chr2:103353367-103460352:+,transmembrane_protein_182,VWA3B->chr2:98703579-98929762:+,von_Willebrand_factor_A_domain_containing_3B	EPLC272H_LUNG	0.15	0.83	0.0398	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	TANC2--MGAT5B	3	2	TANC2	20866	chr17:61428777:+	MGAT5B	66070	chr17:74934070:+	ONLY_REF_SPLICE	YES	22	16	0.19	0.24	0.0239	0.0159	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,MGAT5B->chr17:74864538-74946475:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,_isozyme_B	EPLC272H_LUNG	0.19	0.24	0.0398	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ARHGAP44--RP1-56K13.5	3	1	ARHGAP44	1353	chr17:12693208:+	RP1-56K13.5	35284	chr17:37159972:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0239	0.008	ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+,RP1-56K13.5->chr17:37159501-37169285:-	EPLC272H_LUNG	0.5	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	C17orf85--PPM1E	3	1	C17orf85	11786	chr17:3721557:-	PPM1E	21811	chr17:57033010:+	ONLY_REF_SPLICE	YES	97	1	0.04	0.8	0.0239	0.008	{Klijn_CCL:Lung=1},C17orf85->chr17:3714460-3749545:-,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	EPLC272H_LUNG	0.04	0.8	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	C12orf56--TENM4	3	0	C12orf56	8843	chr12:64687061:-	TENM4	66415	chr11:78387432:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	C12orf56->chr12:64660217-64784972:-,chromosome_12_open_reading_frame_56,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	EPLC272H_LUNG	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	TGIF2--IFT52	3	0	TGIF2	3587	chr20:35207369:+	IFT52	20536	chr20:42252531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	TGIF2->TGFB_induced_factor_homeobox_2,chr20:35201891-35222353:+,IFT52->chr20:42219571-42275936:+,intraflagellar_transport_52	EPLC272H_LUNG	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ADRA1B--ANKLE2	2	0	ADRA1B	2072	chr5:159344861:+	ANKLE2	13494	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	ADRA1B->adrenoceptor_alpha_1B,chr5:159343790-159399551:+,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ALMS1--RAI14	2	0	ALMS1	1435	chr2:73613320:+	RAI14	53544	chr5:34757573:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	ALMS1->ALMS1,_centrosome_and_basal_body_associated_protein,chr2:73612886-73837920:+,RAI14->chr5:34656342-34832732:+,retinoic_acid_induced_14	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	AP000487.5--BCAR3	2	0	AP000487.5	1391	chr11:70244204:-	BCAR3	27656	chr1:94049678:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	AP000487.5->chr11:70218352-70244594:-,BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ARHGEF1--PTPRA	2	0	ARHGEF1	20577	chr19:42410955:+	PTPRA	50329	chr20:3016231:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	ARHGEF1->Rho_guanine_nucleotide_exchange_factor_1,chr19:42387228-42434302:+,PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	BBS1--PRRC2B	2	0	BBS1	10991	chr11:66294393:+	PRRC2B	46001	chr9:134361472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	BBS1->Bardet-Biedl_syndrome_1,chr11:66278077-66301098:+,PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	CASC4--NUSAP1	2	0	CASC4	8731	chr15:44630515:+	NUSAP1	33230	chr15:41650347:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,NUSAP1->chr15:41624892-41673248:+,nucleolar_and_spindle_associated_protein_1	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	CD46--NAP1L1	2	0	CD46	6873	chr1:207940540:+	NAP1L1	32098	chr12:76448870:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	CD46->CD46_molecule,Oncogene{Bushman},chr1:207925402-207968858:+,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	CPSF6--ATP6V0B	2	0	CPSF6	11046	chr12:69656342:+	ATP6V0B	21997	chr1:44442262:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,ATP6V0B->ATPase_H+_transporting_V0_subunit_b,chr1:44440159-44443967:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	DEDD2--SLC38A1	2	0	DEDD2	6504	chr19:42713852:-	SLC38A1	28913	chr12:46594981:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	DEDD2->chr19:42702750-42724292:-,death_effector_domain_containing_2,SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	DEPTOR--EXT1	2	0	DEPTOR	1252	chr8:120886208:+	EXT1	18392	chr8:118849440:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	FAM110A--FKBP1A	2	0	FAM110A	1237	chr20:814594:+	FKBP1A	13821	chr20:1356247:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	FAM110A->chr20:814358-838106:+,family_with_sequence_similarity_110_member_A,FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	FAM175B--NGRN	2	0	FAM175B	2208	chr10:126495490:+	NGRN	15139	chr15:90809520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	FAM175B->chr10:126490354-126525239:+,family_with_sequence_similarity_175_member_B,NGRN->chr15:90808891-90816463:+,neugrin,_neurite_outgrowth_associated	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	GPATCH1--PSMG3	2	0	GPATCH1	21272	chr19:33617639:+	PSMG3	27331	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	GPATCH1->G-patch_domain_containing_1,chr19:33571786-33621448:+,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	IFT43--ATG14	2	0	IFT43	4808	chr14:76488737:+	ATG14	17200	chr14:55864152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	IFT43->chr14:76368479-76550928:+,intraflagellar_transport_43,ATG14->autophagy_related_14,chr14:55833110-55878576:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	INPP5F--BAG3	2	0	INPP5F	1263	chr10:121485871:+	BAG3	31080	chr10:121429363:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	LOCAL_REARRANGEMENT:+:[48278],INPP5F->chr10:121485609-121588652:+,inositol_polyphosphate-5-phosphatase_F,BAG3->BCL2_associated_athanogene_3,Oncogene{Bushman},chr10:121410882-121437331:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	2	0	1	1	TRUE	ACH-000585
EPLC272H_LUNG	IP6K2--CCT3	2	0	IP6K2	15311	chr3:48730387:-	CCT3	24005	chr1:156307580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	IP6K2->chr3:48725436-48777786:-,inositol_hexakisphosphate_kinase_2,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	KNDC1--TYW5	2	0	KNDC1	1123	chr10:134974073:+	TYW5	44916	chr2:200801215:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	KNDC1->chr10:134973951-135039916:+,kinase_non-catalytic_C-lobe_domain_(KIND)_containing_1,TYW5->chr2:200794698-200820459:-,tRNA-yW_synthesizing_protein_5	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	LARP1--GNAS	2	0	LARP1	2848	chr5:154135753:+	GNAS	43488	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	1	0	1	1	TRUE	ACH-000585
EPLC272H_LUNG	LCOR--ATP5C1	2	0	LCOR	1140	chr10:98592156:+	ATP5C1	24353	chr10:7839010:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	LCOR->chr10:98592017-98740800:+,ligand_dependent_nuclear_receptor_corepressor,ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	LMBR1--UBE3C	2	0	LMBR1	1303	chr7:156685622:-	UBE3C	38536	chr7:156956504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},LMBR1->chr7:156461646-156685924:-,limb_development_membrane_protein_1,UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	MED18--CLPTM1L	2	0	MED18	2632	chr1:28657246:+	CLPTM1L	14071	chr5:1334498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	MED18->chr1:28655513-28662476:+,mediator_complex_subunit_18,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	NARF--BAIAP2	2	0	NARF	1651	chr17:80416706:+	BAIAP2	32312	chr17:79058632:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor,BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	NUMB--VPS8	2	0	NUMB	5521	chr14:73925199:-	VPS8	82674	chr3:184689437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-,VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	PACS2--MAP2K2	2	0	PACS2	5362	chr14:105814917:+	MAP2K2	35603	chr19:4110653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2,MAP2K2->ArcherDX_panel,FoundationOne_panel,chr19:4090319-4124126:-,mitogen-activated_protein_kinase_kinase_2	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	PAN3--FAM193B	2	0	PAN3	4842	chr13:28752072:+	FAM193B	32013	chr5:176966148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+,FAM193B->chr5:176946789-176981542:-,family_with_sequence_similarity_193_member_B	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	PCSK6--SCG5	2	0	PCSK6	13496	chr15:101922297:-	SCG5	46987	chr15:32988715:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	PCSK6->chr15:101840818-102065405:-,proprotein_convertase_subtilisin/kexin_type_6,SCG5->chr15:32933877-32989299:+,secretogranin_V	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	PLOD3--RGS20	2	0	PLOD3	10035	chr7:100852134:-	RGS20	19996	chr8:54826057:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	PLOD3->chr7:100849258-100861701:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_3,RGS20->chr8:54764368-54871863:+,regulator_of_G-protein_signaling_20	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	POLR2J3--ANXA3	2	0	POLR2J3	5847	chr7:102207444:-	ANXA3	24231	chr4:79500181:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,ANXA3->annexin_A3,chr4:79472673-79531597:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RLF--SKA2	2	0	RLF	1264	chr1:40627308:+	SKA2	23000	chr17:57189706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RNF121--NADSYN1	2	0	RNF121	3604	chr11:71671937:+	NADSYN1	43367	chr11:71208529:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RNF121--PICALM	2	0	RNF121	10131	chr11:71701763:+	PICALM	19322	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RP11-108K3.1--USP8	2	0	RP11-108K3.1	1194	chr15:51329878:+	USP8	24113	chr15:50781998:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RP11-108K3.1->chr15:51329685-51586109:+,USP8->chr15:50716577-50793280:+,ubiquitin_specific_peptidase_8	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RPGR--ADK	2	0	RPGR	1225	chrX:38186593:-	ADK	40100	chr10:76349040:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RPGR->chrX:38128416-38186817:-,retinitis_pigmentosa_GTPase_regulator,ADK->adenosine_kinase,chr10:75910960-76469061:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RPL15--EEF1D	2	0	RPL15	1695	chr3:23958730:+	EEF1D	22275	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	2	0	TRUE	ACH-000585
EPLC272H_LUNG	RPRD1B--TAX1BP1	2	0	RPRD1B	8294	chr20:36694658:+	TAX1BP1	36469	chr7:27867357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RPRD1B->chr20:36661948-36720768:+,regulation_of_nuclear_pre-mRNA_domain_containing_1B,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RRP1B--METTL3	2	0	RRP1B	2330	chr21:45089847:+	METTL3	32119	chr14:21967281:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RRP1B->chr21:45079429-45115958:+,ribosomal_RNA_processing_1B,METTL3->chr14:21966277-21979517:-,methyltransferase_like_3	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	SCLT1--ARNT	2	0	SCLT1	2608	chr4:130003461:-	ARNT	48137	chr1:150807116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	SCLT1->chr4:129786076-130014764:-,sodium_channel_and_clathrin_linker_1,ARNT->Oncogene{Bushman},aryl_hydrocarbon_receptor_nuclear_translocator,chr1:150782181-150849244:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	SEL1L--C9orf3	2	0	SEL1L	1187	chr14:82000019:-	C9orf3	66449	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	TAF9B--ITGB3BP	2	0	TAF9B	3792	chrX:77392412:-	ITGB3BP	22255	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	TAF9B->TATA-box_binding_protein_associated_factor_9b,chrX:77385245-77395203:-,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	TRA2B--FNDC3B	2	0	TRA2B	1312	chr3:185655613:-	FNDC3B	25640	chr3:171830242:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	TYMS--USP36	2	0	TYMS	4286	chr18:662320:+	USP36	15335	chr17:76834832:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	UBE2L3--CNPPD1	2	0	UBE2L3	5318	chr22:21965332:+	CNPPD1	13098	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	UBR5--MFNG	2	0	UBR5	27248	chr8:103305833:-	MFNG	60607	chr22:37876807:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,MFNG->MFNG_O-fucosylpeptide_3-beta-N-acetylglucosaminyltransferase,chr22:37865101-37882439:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	WRB--ORC5	2	0	WRB	4188	chr21:40759781:+	ORC5	24979	chr7:103841406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	WRB->chr21:40752170-40800454:+,tryptophan_rich_basic_protein,ORC5->chr7:103766788-103848495:-,origin_recognition_complex_subunit_5	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ZNF107--TUBGCP6	2	0	ZNF107	7065	chr7:64152338:+	TUBGCP6	29404	chr22:50658444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	ZNF107->chr7:64126511-64171404:+,zinc_finger_protein_107,TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	MIR4435-1HG--ANAPC1	1	2	MIR4435-1HG	14499	chr2:112101638:-	ANAPC1	48681	chr2:112596089:-	ONLY_REF_SPLICE	NO	12	54	0.2	0.05	0.008	0.0159	MIR4435-1HG->chr2:111953927-112252677:-,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	EPLC272H_LUNG	0.05	0.2	0.0239	TRUE	0	1	0	4	1	TRUE	ACH-000585
EPLC272H_LUNG	TMEM182--VWA3B	1	1	TMEM182	5940	chr2:103380886:+	VWA3B	49217	chr2:98887145:+	ONLY_REF_SPLICE	NO	25	1	0.07	0.67	0.008	0.008	TMEM182->chr2:103353367-103460352:+,transmembrane_protein_182,VWA3B->chr2:98703579-98929762:+,von_Willebrand_factor_A_domain_containing_3B	EPLC272H_LUNG	0.07	0.67	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000585
SNB75_CENTRAL_NERVOUS_SYSTEM	NCAPD3--DDX11L2	53	0	NCAPD3	2592	chr11:134093757:-	DDX11L2	37461	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5389	0	NCAPD3->chr11:134020014-134095348:-,non-SMC_condensin_II_complex_subunit_D3,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.5389	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	MTAP--CDKN2A	48	11	MTAP	12211	chr9:21859424:+	CDKN2A	32053	chr9:21968241:-	ONLY_REF_SPLICE	YES	89	195	0.4	0.23	0.488	0.1118	LOCAL_INVERSION:+:-:[36105],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A	SNB75_CENTRAL_NERVOUS_SYSTEM	0.23	0.4	0.5998	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	PLAA--NBEA	41	14	PLAA	9051	chr9:26919308:-	NBEA	57830	chr13:35864526:+	ONLY_REF_SPLICE	YES	30	2	0.65	0.96	0.4168	0.1423	HGNC_GENEFAM,PLAA->chr9:26904081-26947461:-,phospholipase_A2_activating_protein,NBEA->chr13:35516424-36247159:+,neurobeachin	SNB75_CENTRAL_NERVOUS_SYSTEM	0.65	0.96	0.5591	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	ELAVL2--EBPL	20	13	ELAVL2	2776	chr9:23821603:-	EBPL	23638	chr13:50237331:-	ONLY_REF_SPLICE	YES	3	7	0.92	0.82	0.2033	0.1322	ELAVL2->ELAV_like_neuron-specific_RNA_binding_protein_2,chr9:23690102-23826335:-,EBPL->chr13:50234859-50265611:-,emopamil_binding_protein_like	SNB75_CENTRAL_NERVOUS_SYSTEM	0.82	0.92	0.3355	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	ERICH1--AC006004.1	18	0	ERICH1	2423	chr8:681140:-	AC006004.1	28184	chr7:146782914:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.183	0	ERICH1->Oncogene{Bushman},chr8:564746-688106:-,glutamate_rich_1,AC006004.1->chr7:146778026-146794701:-	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.183	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	FOCAD--RP11-399D6.2	13	6	FOCAD	7198	chr9:20720533:+	RP11-399D6.2	68662	chr9:22820737:+	ONLY_REF_SPLICE	YES	18	0	0.51	1	0.1322	0.061	FOCAD->chr9:20658308-20995954:+,focadhesin,RP11-399D6.2->chr9:22646199-22824212:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.51	1	0.1932	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	ELAVL2--EBPL	8	13	ELAVL2	2780	chr9:23821599:-	EBPL	21172	chr13:50243978:-	INCL_NON_REF_SPLICE	YES	4	3	0.84	0.88	0.0813	0.1322	ELAVL2->ELAV_like_neuron-specific_RNA_binding_protein_2,chr9:23690102-23826335:-,EBPL->chr13:50234859-50265611:-,emopamil_binding_protein_like	SNB75_CENTRAL_NERVOUS_SYSTEM	0.84	0.88	0.2135	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	CDKN2A--MIR31HG	7	7	CDKN2A	7230	chr9:21970901:-	MIR31HG	14562	chr9:21477291:-	ONLY_REF_SPLICE	YES	249	1	0.05	0.93	0.0712	0.0712	CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,MIR31HG->MIR31_host_gene,chr9:21455641-21559668:-	SNB75_CENTRAL_NERVOUS_SYSTEM	0.05	0.93	0.1424	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	MTAP--CDKN2A	7	4	MTAP	9899	chr9:21854869:+	CDKN2A	32053	chr9:21968241:-	ONLY_REF_SPLICE	YES	56	195	0.16	0.05	0.0712	0.0407	LOCAL_INVERSION:+:-:[36105],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A	SNB75_CENTRAL_NERVOUS_SYSTEM	0.05	0.16	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--IFI27	6	0	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.061	TRUE	0	2	0	13	2	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	PLCB1--HIPK2	5	1	PLCB1	3721	chr20:8352097:+	HIPK2	58667	chr7:139311531:-	ONLY_REF_SPLICE	YES	8	34	0.43	0.15	0.0508	0.0102	PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1,HIPK2->Oncogene{Bushman},chr7:139246316-139477577:-,homeodomain_interacting_protein_kinase_2	SNB75_CENTRAL_NERVOUS_SYSTEM	0.15	0.43	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	ELAVL2--EBPL	1	15	ELAVL2	3154	chr9:23821225:-	EBPL	21168	chr13:50243982:-	ONLY_REF_SPLICE	YES	4	3	0.8	0.84	0.0102	0.1525	ELAVL2->ELAV_like_neuron-specific_RNA_binding_protein_2,chr9:23690102-23826335:-,EBPL->chr13:50234859-50265611:-,emopamil_binding_protein_like	SNB75_CENTRAL_NERVOUS_SYSTEM	0.8	0.84	0.1627	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	CDKN2B-AS1--DLEU1	3	0	CDKN2B-AS1	6566	chr9:22049227:+	DLEU1	45846	chr13:50964334:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+,DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding)	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	CDKN2B-AS1--DLEU1	3	0	CDKN2B-AS1	11547	chr9:22064017:+	DLEU1	45846	chr13:50964334:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+,DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding)	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	ELAVL2--EBPL	1	7	ELAVL2	2776	chr9:23821603:-	EBPL	25496	chr13:50235344:-	ONLY_REF_SPLICE	YES	3	39	0.73	0.17	0.0102	0.0712	ELAVL2->ELAV_like_neuron-specific_RNA_binding_protein_2,chr9:23690102-23826335:-,EBPL->chr13:50234859-50265611:-,emopamil_binding_protein_like	SNB75_CENTRAL_NERVOUS_SYSTEM	0.17	0.73	0.0814	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	ARL15--NDUFS4	2	0	ARL15	1151	chr5:53606262:-	NDUFS4	15711	chr5:52899282:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0203	TRUE	0	1	0	3	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	CDKN2B-AS1--DLEU1	2	0	CDKN2B-AS1	7702	chr9:22056386:+	DLEU1	45846	chr13:50964334:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+,DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding)	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	PLXNB3--FLNA	2	0	PLXNB3	2219	chrX:153031035:+	FLNA	33211	chrX:153583440:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:1/3694=0.03%,PLXNB3->chrX:153029651-153044801:+,plexin_B3,FLNA->chrX:153576892-153603006:-,filamin_A	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	PLXNB3--FLNA	2	0	PLXNB3	2219	chrX:153031035:+	FLNA	21960	chrX:153596106:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:1/3694=0.03%,PLXNB3->chrX:153029651-153044801:+,plexin_B3,FLNA->chrX:153576892-153603006:-,filamin_A	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000504
GAMG_CENTRAL_NERVOUS_SYSTEM	MAP4K4--AFF3	35	10	MAP4K4	2689	chr2:102315000:+	AFF3	56316	chr2:100453986:-	ONLY_REF_SPLICE	YES	72	15	0.38	0.75	0.3588	0.1025	MAP4K4->chr2:102313312-102511149:+,mitogen-activated_protein_kinase_kinase_kinase_kinase_4,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	GAMG_CENTRAL_NERVOUS_SYSTEM	0.38	0.75	0.4613	TRUE	0	0	0	1	0	TRUE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	MANBA--KDR	6	2	MANBA	7396	chr4:103635595:-	KDR	51585	chr4:55948802:-	ONLY_REF_SPLICE	YES	13	2	0.38	0.8	0.0615	0.0205	MANBA->chr4:103552660-103682151:-,mannosidase_beta,KDR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:55944644-55991756:-,kinase_insert_domain_receptor	GAMG_CENTRAL_NERVOUS_SYSTEM	0.38	0.8	0.082	TRUE	0	0	0	1	0	TRUE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	C1orf86--PODNL1	3	0	C1orf86	11581	chr1:2125078:-	PODNL1	27848	chr19:14047273:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	C1orf86->chr1:2115903-2144159:-,PODNL1->chr19:14042000-14064204:-,podocan-like_1	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	MAP4K4--AFF3	1	5	MAP4K4	2689	chr2:102315000:+	AFF3	58445	chr2:100360602:-	ONLY_REF_SPLICE	YES	72	25	0.08	0.19	0.0103	0.0513	MAP4K4->chr2:102313312-102511149:+,mitogen-activated_protein_kinase_kinase_kinase_kinase_4,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	GAMG_CENTRAL_NERVOUS_SYSTEM	0.08	0.19	0.0616	TRUE	0	0	0	1	0	TRUE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	CTC-228N24.3--STX17	2	0	CTC-228N24.3	5579	chr5:127396836:-	STX17	23248	chr9:102677460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CTC-228N24.3->chr5:127276118-127418864:-,STX17->chr9:102668915-102732618:+,syntaxin_17	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	GNB1--TPM1	2	0	GNB1	1237	chr1:1822259:-	TPM1	28439	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	SBNO1--KRT2	1	1	SBNO1	1143	chr12:123849248:-	KRT2	45220	chr12:53039353:-	ONLY_REF_SPLICE	NO	55	0	0.04	1	0.0103	0.0103	SBNO1->Oncogene{Bushman},chr12:123773656-123849390:-,strawberry_notch_homolog_1_(Drosophila),KRT2->chr12:53038342-53045948:-,keratin_2	GAMG_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000098
NCIH3122_LUNG	PRKD1--RP11-423O2.7	417	219	PRKD1	5311	chr14:30194742:-	RP11-423O2.7	35309	chr1:142951557:-	ONLY_REF_SPLICE	YES	87	0	0.88	1	4.5223	2.375	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,RP11-423O2.7->chr1:142950985-142956716:-	NCIH3122_LUNG	0.88	1	6.8973	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	EML4--ALK	86	59	EML4	17403	chr2:42522656:+	ALK	58055	chr2:29446394:-	ONLY_REF_SPLICE	YES	303	0	0.32	1	0.9327	0.6398	Cosmic{samples=10751,mutations=680,papers=477},YOSHIHARA_TCGA_num_samples[LUAD:4|THCA:1],chimerdb_pubmed{nonsmallcell lung cancer (NSCLC),nonsmall cell lung cancers (NSCLC),lung cancer,nonsmall cell lung cancer (NSCLC),nonsmall cell lung carcinoma,lung cancers,nonsmallcell lung cancers (NSCLC)},{Klijn_CCL:Lung=1},EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	NCIH3122_LUNG	0.32	1	1.5725	TRUE	0	1	0	1	1	TRUE	ACH-000337
NCIH3122_LUNG	GTF3C1--AC018892.9	55	16	GTF3C1	4027	chr16:27549105:-	AC018892.9	44779	chr2:97748136:+	INCL_NON_REF_SPLICE	YES	11	6	0.87	0.92	0.5965	0.1735	GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1,AC018892.9->chr2:97746835-97748986:+	NCIH3122_LUNG	0.87	0.92	0.77	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	PRKD1--RP11-423O2.7	1	219	PRKD1	18634	chr14:30098247:-	RP11-423O2.7	35309	chr1:142951557:-	ONLY_REF_SPLICE	YES	159	0	0.58	1	0.0108	2.375	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,RP11-423O2.7->chr1:142950985-142956716:-	NCIH3122_LUNG	0.58	1	2.3858	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	SOS1--ADCY3	33	15	SOS1	8750	chr2:39278285:-	ADCY3	37486	chr2:25095588:-	ONLY_REF_SPLICE	YES	34	34	0.59	0.59	0.3579	0.1627	SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-,ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-	NCIH3122_LUNG	0.59	0.59	0.5206	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	GOLGB1--MOV10L1	26	29	GOLGB1	22766	chr3:121409517:-	MOV10L1	59034	chr22:50596486:+	ONLY_REF_SPLICE	YES	146	0	0.27	1	0.282	0.3145	GOLGB1->chr3:121382046-121468602:-,golgin_B1,MOV10L1->Mov10_RISC_complex_RNA_helicase_like_1,chr22:50528308-50600119:+	NCIH3122_LUNG	0.27	1	0.5965	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	PRKD1--RP11-423O2.7	5	22	PRKD1	4172	chr14:30396455:-	RP11-423O2.7	35309	chr1:142951557:-	ONLY_REF_SPLICE	YES	50	0	0.35	1	0.0542	0.2386	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,RP11-423O2.7->chr1:142950985-142956716:-	NCIH3122_LUNG	0.35	1	0.2928	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	ARHGAP5--AKAP6	9	4	ARHGAP5	2322	chr14:32546641:+	AKAP6	24828	chr14:32902666:+	ONLY_REF_SPLICE	YES	122	0	0.1	1	0.0976	0.0434	{Klijn_CCL:Lung=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH3122_LUNG	0.1	1	0.141	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	GTF2IRD2--AUTS2	6	3	GTF2IRD2	3428	chr7:74247928:-	AUTS2	32213	chr7:69755354:+	ONLY_REF_SPLICE	YES	34	0	0.21	1	0.0651	0.0325	GTF2IRD2->GTF2I_repeat_domain_containing_2,chr7:74210483-74267847:-,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	NCIH3122_LUNG	0.21	1	0.0976	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	FAN1--PRAMENP	5	2	FAN1	3046	chr15:31198100:+	PRAMENP	24449	chr22:22380725:-	ONLY_REF_SPLICE	YES	61	0	0.1	1	0.0542	0.0217	FAN1->FANCD2/FANCI-associated_nuclease_1,chr15:31196055-31235311:+,PRAMENP->PRAME_N-terminal-like,_pseudogene,chr22:22345496-22398332:-	NCIH3122_LUNG	0.1	1	0.0759	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	AC002055.4--DAGLA	4	1	AC002055.4	4453	chr22:51223721:+	DAGLA	13785	chr11:61487584:+	ONLY_REF_SPLICE	YES	129	2	0.04	0.71	0.0434	0.0108	AC002055.4->chr22:51195376-51239737:+,DAGLA->chr11:61447905-61514473:+,diacylglycerol_lipase_alpha	NCIH3122_LUNG	0.04	0.71	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	CTC-228N24.2--CTC-228N24.3	3	1	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	27	1	0.13	0.0325	0.0108	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	NCIH3122_LUNG	0.13	1	0.0433	TRUE	0	1	0	12	1	TRUE	ACH-000337
NCIH3122_LUNG	ARHGAP5--AKAP6	2	0	ARHGAP5	1940	chr14:32546259:+	AKAP6	24828	chr14:32902666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	{Klijn_CCL:Lung=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	ARHGAP5--AKAP6	1	4	ARHGAP5	2322	chr14:32546641:+	AKAP6	23388	chr14:32871204:+	ONLY_REF_SPLICE	YES	122	0	0.04	1	0.0108	0.0434	{Klijn_CCL:Lung=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH3122_LUNG	0.04	1	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	GEMIN4--ABR	2	0	GEMIN4	2685	chr17:655373:-	ABR	43546	chr17:916404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GEMIN4->chr17:647654-657239:-,gem_nuclear_organelle_associated_protein_4,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	HIF1A--PRKCH	2	0	HIF1A	1327	chr14:62162557:+	PRKCH	48659	chr14:61952220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	NCIH3122_LUNG	1	1	0.0217	TRUE	1	15	1	9	1	TRUE	ACH-000337
NCIH3122_LUNG	ITM2C--NCOA7	2	0	ITM2C	3474	chr2:231738272:+	NCOA7	32645	chr6:126243828:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	ITM2C->chr2:231729354-231743963:+,integral_membrane_protein_2C,NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	MAP7--PERP	2	0	MAP7	1478	chr6:136871480:-	PERP	26553	chr6:138417631:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7,PERP->PERP,_TP53_apoptosis_effector,chr6:138409642-138428648:-	NCIH3122_LUNG	1	1	0.0217	TRUE	0	2	0	1	1	TRUE	ACH-000337
NCIH3122_LUNG	MAPK13--AKT2	2	0	MAPK13	7900	chr6:36106557:+	AKT2	31527	chr19:40744880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PROTCLUST,MAPK13->Oncogene{Bushman},chr6:36095586-36107842:+,mitogen-activated_protein_kinase_13,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	MAPK8--LRRC1	2	0	MAPK8	1167	chr10:49514864:+	LRRC1	25723	chr6:53706908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	MAPK8->Oncogene{Bushman},chr10:49514698-49647403:+,mitogen-activated_protein_kinase_8,LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	RAB30-AS1--AATF	2	0	RAB30-AS1	1637	chr11:82783744:+	AATF	18290	chr17:35376304:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	RAB30-AS1->RAB30_antisense_RNA_1_(head_to_head),chr11:82783108-82817761:+,AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	TPP2--TEX30	2	0	TPP2	2330	chr13:103257271:+	TEX30	41472	chr13:103422436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LOCAL_INVERSION:+:-:[86819],TPP2->chr13:103249353-103331521:+,tripeptidyl_peptidase_2,TEX30->chr13:103418340-103426161:-,testis_expressed_30	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	UBE3A--SNRPN	2	0	UBE3A	1493	chr15:25683636:-	SNRPN	29711	chr15:25207261:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1},UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A,SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	2	0	TRUE	ACH-000337
KATOIII_STOMACH	HMCES--MECOM	48	28	HMCES	6733	chr3:129020985:+	MECOM	34511	chr3:168820014:-	ONLY_REF_SPLICE	YES	690	19	0.1	0.8	0.641	0.3739	HMCES->5-hydroxymethylcytosine_(hmC)_binding,_ES_cell-specific,chr3:128997671-129025029:+,MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-	KATOIII_STOMACH	0.1	0.8	1.0149	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	AES--AC005262.3	25	9	AES	2948	chr19:3061158:-	AC005262.3	11996	chr19:3119302:-	ONLY_REF_SPLICE	YES	528	0	0.06	1	0.3339	0.1202	LOCAL_REARRANGEMENT:-:[55558],AES->amino-terminal_enhancer_of_split,chr19:3052908-3063105:-,AC005262.3->chr19:3118663-3119302:-	KATOIII_STOMACH	0.06	1	0.4541	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	AES--AC005262.3	15	9	AES	2948	chr19:3061158:-	AC005262.3	11999	chr19:3119299:-	INCL_NON_REF_SPLICE	YES	528	0	0.04	1	0.2003	0.1202	LOCAL_REARRANGEMENT:-:[55558],AES->amino-terminal_enhancer_of_split,chr19:3052908-3063105:-,AC005262.3->chr19:3118663-3119302:-	KATOIII_STOMACH	0.04	1	0.3205	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	HMCES--MECOM	10	29	HMCES	6733	chr3:129020985:+	MECOM	33484	chr3:168825740:-	ONLY_REF_SPLICE	YES	690	18	0.05	0.68	0.1335	0.3873	HMCES->5-hydroxymethylcytosine_(hmC)_binding,_ES_cell-specific,chr3:128997671-129025029:+,MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-	KATOIII_STOMACH	0.05	0.68	0.5208	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	PAFAH1B2--SIK3	13	10	PAFAH1B2	1152	chr11:117015134:+	SIK3	18973	chr11:116827780:-	ONLY_REF_SPLICE	YES	80	32	0.22	0.42	0.1736	0.1335	LOCAL_INVERSION:+:-:[45830],PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,SIK3->Oncogene{Bushman},SIK_family_kinase_3,chr11:116714118-116969153:-	KATOIII_STOMACH	0.22	0.42	0.3071	TRUE	0	1	0	2	0	TRUE	ACH-000793
KATOIII_STOMACH	HDAC4--ILKAP	6	4	HDAC4	1677	chr2:240322672:-	ILKAP	59806	chr2:239090827:-	ONLY_REF_SPLICE	YES	1	102	0.91	0.09	0.0801	0.0534	HDAC4->Oncogene{Bushman},chr2:239969864-240323348:-,histone_deacetylase_4,ILKAP->ILK_associated_serine/threonine_phosphatase,chr2:239079042-239112370:-	KATOIII_STOMACH	0.09	0.91	0.1335	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	AP003900.6--AC008132.1	3	5	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0401	0.0668	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KATOIII_STOMACH	0.67	1	0.1069	TRUE	0	0	0	16	0	TRUE	ACH-000793
KATOIII_STOMACH	AP003900.6--AC008132.1	3	1	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	4	15	0.5	0.21	0.0401	0.0134	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KATOIII_STOMACH	0.21	0.5	0.0535	TRUE	0	0	0	13	0	TRUE	ACH-000793
KATOIII_STOMACH	HDAC4--ILKAP	2	1	HDAC4	1677	chr2:240322672:-	ILKAP	61201	chr2:239082294:-	ONLY_REF_SPLICE	NO	1	79	0.75	0.04	0.0267	0.0134	HDAC4->Oncogene{Bushman},chr2:239969864-240323348:-,histone_deacetylase_4,ILKAP->ILK_associated_serine/threonine_phosphatase,chr2:239079042-239112370:-	KATOIII_STOMACH	0.04	0.75	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	AZIN1--RABL6	2	0	AZIN1	5359	chr8:103876035:-	RABL6	27470	chr9:139717977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	C22orf34--OSER1	2	0	C22orf34	1138	chr22:50051053:-	OSER1	22519	chr20:42835638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	C22orf34->chr22:49808176-50051190:-,chromosome_22_open_reading_frame_34,OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	CDH3--FIS1	2	0	CDH3	9372	chr16:68716390:+	FIS1	24786	chr7:100887420:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	CDH3->cadherin_3,chr16:68670092-68756519:+,FIS1->chr7:100882739-100895597:-,fission,_mitochondrial_1	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	DEF6--SNX5	2	0	DEF6	1135	chr6:35265729:+	SNX5	16949	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	DEF6->DEF6,_guanine_nucleotide_exchange_factor,chr6:35265595-35289548:+,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	EDF1--SAPCD2	2	0	EDF1	3072	chr9:139757358:-	SAPCD2	8559	chr9:139960826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,SAPCD2->chr9:139956581-139965040:-,suppressor_APC_domain_containing_2	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	2	0	TRUE	ACH-000793
KATOIII_STOMACH	HNRNPA2B1--EDEM1	2	0	HNRNPA2B1	1958	chr7:26240192:-	EDEM1	17628	chr3:5236894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,EDEM1->ER_degradation_enhancing_alpha-mannosidase_like_protein_1,chr3:5229331-5261642:+	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	NELFCD--GGA2	2	0	NELFCD	5710	chr20:57564695:+	GGA2	33907	chr16:23478099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	NELFCD->chr20:57556263-57570188:+,negative_elongation_factor_complex_member_C/D,GGA2->chr16:23474863-23533316:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_2	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	PCNP--PPP2CB	2	0	PCNP	1185	chr3:101293123:+	PPP2CB	15938	chr8:30657271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	PCNP->PEST_proteolytic_signal_containing_nuclear_protein,chr3:101292939-101313281:+,PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	RCC1--SNX5	2	0	RCC1	2175	chr1:28834672:+	SNX5	23224	chr20:17937681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	2	0	TRUE	ACH-000793
KATOIII_STOMACH	SRRD--GSTT2	1	4	SRRD	3771	chr22:26884454:+	GSTT2	13187	chr22:24323139:+	ONLY_REF_SPLICE	YES	81	22	0.06	0.19	0.0134	0.0534	SRRD->SRR1_domain_containing,chr22:26879843-26890624:+,GSTT2->chr22:24322339-24326106:+,glutathione_S-transferase_theta_2_(gene/pseudogene)	KATOIII_STOMACH	0.06	0.19	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	TFRC--AVL9	2	0	TFRC	19706	chr3:195780289:-	AVL9	47870	chr7:32612811:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,AVL9->AVL9_cell_migration_associated,chr7:32535038-33078516:+	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	RP11-307P5.1--SASH1	1	1	RP11-307P5.1	6659	chr6:148268655:+	SASH1	16613	chr6:148789681:+	ONLY_REF_SPLICE	YES	0	17	1	0.11	0.0134	0.0134	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KATOIII_STOMACH	0.11	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000793
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ARL6IP4	8	0	PTMA	6054	chr2:232576687:+	ARL6IP4	12315	chr12:123466303:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1595	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ARL6IP4->ADP_ribosylation_factor_like_GTPase_6_interacting_protein_4,chr12:123464607-123467456:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1595	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTHFR--GAPDH	4	0	MTHFR	16597	chr1:11847561:-	GAPDH	24780	chr12:6646518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0	MTHFR->Oncogene{Bushman},chr1:11845780-11866977:-,methylenetetrahydrofolate_reductase_(NAD(P)H),GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD22--EEF1G	3	0	CD22	11404	chr19:35832850:+	EEF1G	20356	chr11:62340093:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	CD22->CD22_molecule,chr19:35810164-35838258:+,EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HN1L--RAB11FIP3	3	0	HN1L	1101	chr16:1728357:+	RAB11FIP3	16870	chr16:511404:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0598	0	HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like,RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ODF2--PHGDH	3	0	ODF2	18644	chr9:131256898:+	PHGDH	30396	chr1:120254663:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	ODF2->chr9:131217465-131263571:+,outer_dense_fiber_of_sperm_tails_2,PHGDH->chr1:120202421-120286838:+,phosphoglycerate_dehydrogenase	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD9--WDR45B	3	0	SMAD9	4304	chr13:37446997:-	WDR45B	29422	chr17:80572866:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	SMAD9->SMAD_family_member_9,chr13:37418968-37494902:-,WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMX4--CCT7	3	0	TMX4	10920	chr20:7963052:-	CCT7	31819	chr2:73478378:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	TMX4->chr20:7957995-8000476:-,thioredoxin_related_transmembrane_protein_4,CCT7->chaperonin_containing_TCP1_subunit_7,chr2:73460548-73480149:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAF2--USF2	3	0	TRAF2	8034	chr9:139794914:+	USF2	29643	chr19:35770194:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,USF2->chr19:35759881-35770724:+,upstream_transcription_factor_2,_c-fos_interacting	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBXN1--RAB8A	3	0	UBXN1	2058	chr11:62445510:-	RAB8A	16429	chr19:16243606:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	UBXN1->UBX_domain_protein_1,chr11:62443970-62446567:-,RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCLAF1--RANBP9	2	0	BCLAF1	14856	chr6:136588167:-	RANBP9	30591	chr6:13644961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-,RANBP9->RAN_binding_protein_9,chr6:13621730-13711796:-	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT2--RBM26	2	0	CNOT2	3472	chr12:70672054:+	RBM26	52821	chr13:79916966:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-432M15.3--SNX2	2	0	CTC-432M15.3	7707	chr5:130883740:-	SNX2	39746	chr5:122130961:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	CTC-432M15.3->chr5:130761584-131132676:-,SNX2->chr5:122110691-122165803:+,sorting_nexin_2	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--ITGB3BP	2	0	DANCR	1530	chr4:53579126:+	ITGB3BP	18619	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	9	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHX33--RP11-84A14.4	2	0	DHX33	2651	chr17:5366849:-	RP11-84A14.4	20190	chr1:10009696:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	DHX33->DEAH-box_helicase_33,chr17:5344232-5372380:-,RP11-84A14.4->chr1:10002981-10010032:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LEF1--WSB1	2	0	LEF1	5980	chr4:109084724:-	WSB1	32277	chr17:25636126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	LEF1->Oncogene{Bushman},chr4:108968701-109090112:-,lymphoid_enhancer_binding_factor_1,WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NAP1L1--OSER1	2	0	NAP1L1	1467	chr12:76478347:-	OSER1	26571	chr20:42835638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1,OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKDC--SRSF1	2	0	PRKDC	26650	chr8:48812933:-	SRSF1	91050	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNASEH1--SRSF5	2	0	RNASEH1	1484	chr2:3605723:-	SRSF5	18249	chr14:70237184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	RNASEH1->chr2:3592383-3606206:-,ribonuclease_H1,SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC31A--MPPE1	2	0	SEC31A	3528	chr4:83819142:-	MPPE1	44671	chr18:11906308:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,MPPE1->Oncogene{Bushman},chr18:11882621-11909222:-,metallophosphoesterase_1	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG1--FANCD2	2	0	SNHG1	2396	chr11:62621991:-	FANCD2	45315	chr3:10136884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	SNHG1->chr11:62619460-62623386:-,small_nucleolar_RNA_host_gene_1,FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPOP--GNAS	2	0	SPOP	1302	chr17:47755295:-	GNAS	39022	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	1	0	0	2	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THADA--DAZAP1	2	0	THADA	1400	chr2:43822786:-	DAZAP1	64427	chr19:1416456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRSF1--MTIF3	1	1	GRSF1	5201	chr4:71698024:-	MTIF3	25422	chr13:28010030:-	ONLY_REF_SPLICE	NO	43	4	0.04	0.33	0.0199	0.0199	GRSF1->G-rich_RNA_sequence_binding_factor_1,chr4:71681499-71705662:-,MTIF3->chr13:28009776-28024739:-,mitochondrial_translational_initiation_factor_3	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.33	0.0398	TRUE	0	0	0	1	0	TRUE	ACH-000660
SNU1_STOMACH	CECR7--AC008132.1	356	45	CECR7	1775	chr22:17518234:+	AC008132.1	13601	chr22:18723545:+	ONLY_REF_SPLICE	YES	9	0	0.98	1	3.2997	0.4171	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	SNU1_STOMACH	0.98	1	3.7168	TRUE	0	0	0	5	0	TRUE	ACH-000932
SNU1_STOMACH	SLC38A2--PTMA	248	2	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	1116	0	0.18	1	2.2987	0.0185	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SNU1_STOMACH	0.18	1	2.3172	TRUE	0	0	0	10	0	TRUE	ACH-000932
SNU1_STOMACH	CECR7--AC008132.1	28	20	CECR7	1775	chr22:17518234:+	AC008132.1	16240	chr22:18732023:+	ONLY_REF_SPLICE	YES	9	40	0.84	0.55	0.2595	0.1854	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	SNU1_STOMACH	0.55	0.84	0.4449	TRUE	0	0	0	5	0	TRUE	ACH-000932
SNU1_STOMACH	CECR7--AC008132.1	24	30	CECR7	1775	chr22:17518234:+	AC008132.1	15153	chr22:18727043:+	ONLY_REF_SPLICE	YES	9	3	0.86	0.95	0.2225	0.2781	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	SNU1_STOMACH	0.86	0.95	0.5006	TRUE	0	0	0	5	0	TRUE	ACH-000932
SNU1_STOMACH	CECR7--AC008132.1	2	33	CECR7	1775	chr22:17518234:+	AC008132.1	14128	chr22:18724072:+	ONLY_REF_SPLICE	YES	9	0	0.8	1	0.0185	0.3059	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	SNU1_STOMACH	0.8	1	0.3244	TRUE	0	0	0	5	0	TRUE	ACH-000932
SNU1_STOMACH	AP000350.4--PKM	7	10	AP000350.4	3774	chr22:24236611:-	PKM	7428	chr15:72523509:-	INCL_NON_REF_SPLICE	YES	0	72	1	0.19	0.0649	0.0927	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SNU1_STOMACH	0.19	1	0.1576	TRUE	0	0	0	14	0	TRUE	ACH-000932
SNU1_STOMACH	AC074363.1--B3GALT1	1	29	AC074363.1	2265	chr2:168346787:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	NO	4	0	0.88	1	0.0093	0.2688	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	SNU1_STOMACH	0.88	1	0.2781	TRUE	0	4	2	6	4	TRUE	ACH-000932
SNU1_STOMACH	AP000350.4--PKM	3	11	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	71	1	0.16	0.0278	0.102	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SNU1_STOMACH	0.16	1	0.1298	TRUE	0	0	0	14	0	TRUE	ACH-000932
SNU1_STOMACH	RP11-275N1.1--NEBL	3	6	RP11-275N1.1	2205	chr10:21658896:-	NEBL	14143	chr10:21309130:-	ONLY_REF_SPLICE	YES	13	2	0.41	0.82	0.0278	0.0556	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	SNU1_STOMACH	0.41	0.82	0.0834	TRUE	0	0	0	3	0	TRUE	ACH-000932
SNU1_STOMACH	AP000525.9--LA16c-60G3.6	3	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	15	0	0.25	1	0.0278	0.0185	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU1_STOMACH	0.25	1	0.0463	TRUE	0	5	0	18	5	TRUE	ACH-000932
SNU1_STOMACH	PISD--NHP2L1	3	0	PISD	3545	chr22:32044087:-	NHP2L1	25386	chr22:42076368:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	PISD->chr22:32014477-32058418:-,phosphatidylserine_decarboxylase,NHP2L1->chr22:42069934-42086508:-	SNU1_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000932
SNU1_STOMACH	C17orf76-AS1--SET	2	0	C17orf76-AS1	1593	chr17:16342728:+	SET	17862	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	C17orf76-AS1->chr17:16342136-16381992:+,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1_STOMACH	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000932
SNU1_STOMACH	ELOVL5--TMEM8A	2	0	ELOVL5	1333	chr6:53213615:-	TMEM8A	23019	chr16:427848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A	SNU1_STOMACH	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000932
SNU1_STOMACH	LSMD1--SSBP1	2	0	LSMD1	2175	chr17:7786553:-	SSBP1	10194	chr7:141438924:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	LSMD1->chr17:7760003-7788556:-,SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1	SNU1_STOMACH	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000932
SNU1_STOMACH	PPP5C--STRN4	2	0	PPP5C	2466	chr19:46857246:+	STRN4	29573	chr19:47232034:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,STRN4->chr19:47222764-47250251:-,striatin_4	SNU1_STOMACH	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000932
SNU1_STOMACH	PXMP2--ANKLE2	2	0	PXMP2	2662	chr12:133266962:+	ANKLE2	21143	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	LOCAL_INVERSION:+:-:[4978],PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	SNU1_STOMACH	1	1	0.0185	TRUE	0	1	0	4	0	TRUE	ACH-000932
SNU1_STOMACH	RP4-769N13.6--LL0XNC01-237H1.2	1	1	RP4-769N13.6	4703	chrX:101860581:+	LL0XNC01-237H1.2	15292	chrX:102152502:+	ONLY_REF_SPLICE	YES	28	0	0.07	1	0.0093	0.0093	RP4-769N13.6->chrX:101854440-101969599:+,LL0XNC01-237H1.2->chrX:102139342-102161086:+	SNU1_STOMACH	0.07	1	0.0186	TRUE	0	1	0	1	1	TRUE	ACH-000932
SNU1_STOMACH	SSBP1--MGAM	1	1	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0093	0.0093	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	SNU1_STOMACH	0.5	1	0.0186	TRUE	0	1	0	7	1	TRUE	ACH-000932
NCIH2172_LUNG	RP11-312O7.2--SRGAP2C	87	53	RP11-312O7.2	2914	chr1:206135293:-	SRGAP2C	5945	chr1:121107154:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.786	0.4788	RP11-312O7.2->chr1:206135293-206137984:-,SRGAP2C->SLIT-ROBO_Rho_GTPase_activating_protein_2C,chr1:121107124-121129949:+	NCIH2172_LUNG	1	1	1.2648	TRUE	0	6	1	1	6	TRUE	ACH-000924
NCIH2172_LUNG	ACBD5--RP11-476F14.1	70	6	ACBD5	7786	chr10:27508652:-	RP11-476F14.1	24024	chr10:33868297:-	ONLY_REF_SPLICE	YES	79	0	0.49	1	0.6324	0.0542	ACBD5->acyl-CoA_binding_domain_containing_5,chr10:27484146-27531059:-,RP11-476F14.1->chr10:33867859-33888968:-	NCIH2172_LUNG	0.49	1	0.6866	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	ARL13B--FRMD4B	68	11	ARL13B	5445	chr3:93722752:+	FRMD4B	42317	chr3:69271074:-	ONLY_REF_SPLICE	YES	33	0	0.71	1	0.6143	0.0994	{Klijn_CCL:Lung=1},ARL13B->ADP_ribosylation_factor_like_GTPase_13B,chr3:93698983-93774512:+,FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-	NCIH2172_LUNG	0.71	1	0.7137	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	CALM3--MYL6	48	2	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	727	64	0.06	0.44	0.4337	0.0181	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	NCIH2172_LUNG	0.06	0.44	0.4518	TRUE	0	0	0	8	0	TRUE	ACH-000924
NCIH2172_LUNG	TRAK1--ARL13B	35	16	TRAK1	5299	chr3:42167106:+	ARL13B	38581	chr3:93722503:+	ONLY_REF_SPLICE	YES	69	57	0.42	0.47	0.3162	0.1446	{Klijn_CCL:Lung=1},TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1,ARL13B->ADP_ribosylation_factor_like_GTPase_13B,chr3:93698983-93774512:+	NCIH2172_LUNG	0.42	0.47	0.4608	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	BBX--FRMD4B	29	10	BBX	4463	chr3:107245245:+	FRMD4B	85587	chr3:69225807:-	ONLY_REF_SPLICE	YES	19	4	0.67	0.91	0.262	0.0903	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-	NCIH2172_LUNG	0.67	0.91	0.3523	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	TSEN15--RGL1	24	10	TSEN15	2724	chr1:184023997:+	RGL1	32949	chr1:183891356:+	ONLY_REF_SPLICE	YES	136	9	0.2	0.79	0.2168	0.0903	TSEN15->chr1:184020811-184043346:+,tRNA_splicing_endonuclease_subunit_15,RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1	NCIH2172_LUNG	0.2	0.79	0.3071	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	CDKAL1--MOB3B	15	5	CDKAL1	4234	chr6:20548936:+	MOB3B	26818	chr9:27359234:-	ONLY_REF_SPLICE	YES	38	22	0.34	0.48	0.1355	0.0452	{Klijn_CCL:Lung=1},CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,MOB3B->MOB_kinase_activator_3B,chr9:27325207-27529779:-	NCIH2172_LUNG	0.34	0.48	0.1807	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	ENTPD1-AS1--TM9SF3	11	3	ENTPD1-AS1	1973	chr10:97849023:-	TM9SF3	37069	chr10:98321895:-	ONLY_REF_SPLICE	YES	1	156	0.93	0.08	0.0994	0.0271	ENTPD1-AS1->ENTPD1_antisense_RNA_1,chr10:97512963-97849995:-,TM9SF3->chr10:98277866-98347209:-,transmembrane_9_superfamily_member_3	NCIH2172_LUNG	0.08	0.93	0.1265	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	NSMF--PNPLA7	9	10	NSMF	7970	chr9:140346817:-	PNPLA7	36406	chr9:140373690:-	ONLY_REF_SPLICE	YES	109	11	0.15	0.63	0.0813	0.0903	LOCAL_REARRANGEMENT:-:[618],NSMF->NMDA_receptor_synaptonuclear_signaling_and_neuronal_migration_factor,chr9:140342022-140353786:-,PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7	NCIH2172_LUNG	0.15	0.63	0.1716	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	RP11-312O7.2--SRGAP2C	2	27	RP11-312O7.2	2914	chr1:206135293:-	SRGAP2C	7008	chr1:121115832:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0.2439	RP11-312O7.2->chr1:206135293-206137984:-,SRGAP2C->SLIT-ROBO_Rho_GTPase_activating_protein_2C,chr1:121107124-121129949:+	NCIH2172_LUNG	1	1	0.262	TRUE	0	6	1	1	6	TRUE	ACH-000924
NCIH2172_LUNG	TRAK1--FRMD4B	6	3	TRAK1	5299	chr3:42167106:+	FRMD4B	59005	chr3:69267530:-	ONLY_REF_SPLICE	YES	69	1	0.12	0.9	0.0542	0.0271	TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1,FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-	NCIH2172_LUNG	0.12	0.9	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	NSL1--SDK1	5	4	NSL1	4740	chr1:212955714:-	SDK1	16376	chr7:3658712:+	ONLY_REF_SPLICE	YES	24	0	0.27	1	0.0452	0.0361	NSL1->NSL1,_MIS12_kinetochore_complex_component,chr1:212899495-212965124:-,SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1	NCIH2172_LUNG	0.27	1	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	GREM2--FMN2	5	1	GREM2	1266	chr1:240775184:-	FMN2	33221	chr1:240601361:+	ONLY_REF_SPLICE	YES	60	29	0.09	0.17	0.0452	0.009	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	NCIH2172_LUNG	0.09	0.17	0.0542	TRUE	0	0	0	3	0	TRUE	ACH-000924
NCIH2172_LUNG	ARL13B--FRMD4B	3	7	ARL13B	5445	chr3:93722752:+	FRMD4B	43383	chr3:69267530:-	ONLY_REF_SPLICE	YES	33	1	0.23	0.91	0.0271	0.0632	{Klijn_CCL:Lung=1},ARL13B->ADP_ribosylation_factor_like_GTPase_13B,chr3:93698983-93774512:+,FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-	NCIH2172_LUNG	0.23	0.91	0.0903	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	NUP93--MT2A	3	0	NUP93	1107	chr16:56764123:+	MT2A	32370	chr16:56642904:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NUP93->ArcherDX_panel,FoundationOne_panel,chr16:56764017-56878797:+,nucleoporin_93kDa,MT2A->chr16:56642111-56643409:+,metallothionein_2A	NCIH2172_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	RP11-357C3.3--ARHGEF9	3	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	31030	chrX:62875617:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	NCIH2172_LUNG	1	1	0.0271	TRUE	0	1	0	2	0	TRUE	ACH-000924
NCIH2172_LUNG	TNFRSF1A--PTMS	3	0	TNFRSF1A	1339	chr12:6450942:-	PTMS	13541	chr12:6878769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	TNFRSF1A->Oncogene{Bushman},chr12:6437923-6451280:-,tumor_necrosis_factor_receptor_superfamily_member_1A,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH2172_LUNG	1	1	0.0271	TRUE	0	0	0	2	0	TRUE	ACH-000924
NCIH2172_LUNG	TSEN15--RGL1	3	0	TSEN15	1214	chr1:184021024:+	RGL1	32949	chr1:183891356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	TSEN15->chr1:184020811-184043346:+,tRNA_splicing_endonuclease_subunit_15,RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1	NCIH2172_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	NSL1--SDK1	2	3	NSL1	3463	chr1:212957705:-	SDK1	16376	chr7:3658712:+	ONLY_REF_SPLICE	YES	19	0	0.21	1	0.0181	0.0271	NSL1->NSL1,_MIS12_kinetochore_complex_component,chr1:212899495-212965124:-,SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1	NCIH2172_LUNG	0.21	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	AGPAT5--RP1L1	2	1	AGPAT5	3256	chr8:6582460:+	RP1L1	20436	chr8:10480730:-	ONLY_REF_SPLICE	YES	41	0	0.07	1	0.0181	0.009	AGPAT5->1-acylglycerol-3-phosphate_O-acyltransferase_5,chr8:6565878-6617184:+,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	NCIH2172_LUNG	0.07	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	ATRX--SCAPER	2	0	ATRX	1235	chrX:77041468:-	SCAPER	61144	chr15:77067458:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-	NCIH2172_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	CSGALNACT1--SH2D4A	2	0	CSGALNACT1	2955	chr8:19589967:-	SH2D4A	38545	chr8:19250829:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[7943],CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-,SH2D4A->SH2_domain_containing_4A,chr8:19171128-19253729:+	NCIH2172_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	CYTH1--USP36	2	0	CYTH1	1096	chr17:76778284:-	USP36	28423	chr17:76834832:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_REARRANGEMENT:-:[5084],CYTH1->chr17:76670130-76778379:-,cytohesin_1,USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36	NCIH2172_LUNG	1	1	0.0181	TRUE	0	1	0	3	1	TRUE	ACH-000924
NCIH2172_LUNG	RBL1--C20orf24	2	0	RBL1	22455	chr20:35632105:-	C20orf24	30497	chr20:35236118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1,C20orf24->chr20:35234137-35240960:+,chromosome_20_open_reading_frame_24	NCIH2172_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	RP11-357C3.3--ARHGEF9	2	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	27535	chrX:62898452:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	NCIH2172_LUNG	1	1	0.0181	TRUE	0	2	0	6	0	TRUE	ACH-000924
NCIH2172_LUNG	FRAS1--BMP2K	1	1	FRAS1	26619	chr4:79258971:+	BMP2K	94540	chr4:79747191:+	ONLY_REF_SPLICE	NO	2	5	0.5	0.29	0.009	0.009	FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+,BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+	NCIH2172_LUNG	0.29	0.5	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000924
HEC59_ENDOMETRIUM	PSAT1--CEP78	138	73	PSAT1	7937	chr9:80932720:+	CEP78	15579	chr9:80854939:+	ONLY_REF_SPLICE	YES	1604	89	0.12	0.7	1.7435	0.9223	LOCAL_REARRANGEMENT:+:[17453],PSAT1->chr9:80912059-80945009:+,phosphoserine_aminotransferase_1,CEP78->centrosomal_protein_78,chr9:80850978-80894606:+	HEC59_ENDOMETRIUM	0.12	0.7	2.6658	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CBLC--CEACAM16	77	21	CBLC	6223	chr19:45293348:+	CEACAM16	15630	chr19:45206619:+	ONLY_REF_SPLICE	YES	18	0	0.84	1	0.9728	0.2653	LOCAL_REARRANGEMENT:+:[67140],CBLC->Cbl_proto-oncogene_C,Oncogene{Bushman},chr19:45281126-45303891:+,CEACAM16->carcinoembryonic_antigen_related_cell_adhesion_molecule_16,chr19:45202421-45213986:+	HEC59_ENDOMETRIUM	0.84	1	1.2381	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CAPZA2--MET	73	10	CAPZA2	3371	chr7:116502704:+	MET	34809	chr7:116395409:+	ONLY_REF_SPLICE	YES	202	242	0.29	0.26	0.9223	0.1263	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HEC59_ENDOMETRIUM	0.26	0.29	1.0486	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	TGFBR2--AC116035.1	61	13	TGFBR2	1476	chr3:30648469:+	AC116035.1	15663	chr3:30566195:+	INCL_NON_REF_SPLICE	YES	29	0	0.72	1	0.7707	0.1642	LOCAL_REARRANGEMENT:+:[79317],TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,AC116035.1->chr3:30566237-30568677:+	HEC59_ENDOMETRIUM	0.72	1	0.9349	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	LSM12--HDAC5	53	39	LSM12	3290	chr17:42141169:-	HDAC5	20129	chr17:42165064:-	ONLY_REF_SPLICE	YES	227	22	0.29	0.81	0.6696	0.4927	LOCAL_REARRANGEMENT:-:[9127],LSM12->LSM12_homolog,chr17:42112003-42144987:-,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	HEC59_ENDOMETRIUM	0.29	0.81	1.1623	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	LSM12--HDAC5	36	16	LSM12	3290	chr17:42141169:-	HDAC5	22934	chr17:42162043:-	ONLY_REF_SPLICE	YES	227	64	0.19	0.45	0.4548	0.2021	LOCAL_REARRANGEMENT:-:[9127],LSM12->LSM12_homolog,chr17:42112003-42144987:-,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	HEC59_ENDOMETRIUM	0.19	0.45	0.6569	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	MRPL33--GPN1	35	14	MRPL33	7907	chr2:28152775:+	GPN1	13615	chr2:27852726:+	ONLY_REF_SPLICE	YES	12	168	0.8	0.23	0.4422	0.1769	MRPL33->chr2:27994584-28210954:+,mitochondrial_ribosomal_protein_L33,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	HEC59_ENDOMETRIUM	0.23	0.8	0.6191	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	TGFBR2--AC116035.1	25	21	TGFBR2	2551	chr3:30664765:+	AC116035.1	15663	chr3:30566195:+	INCL_NON_REF_SPLICE	YES	37	0	0.55	1	0.3158	0.2653	LOCAL_REARRANGEMENT:+:[79317],TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,AC116035.1->chr3:30566237-30568677:+	HEC59_ENDOMETRIUM	0.55	1	0.5811	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	LSM12--HDAC5	19	21	LSM12	3290	chr17:42141169:-	HDAC5	21088	chr17:42164105:-	ONLY_REF_SPLICE	YES	227	32	0.15	0.56	0.24	0.2653	LOCAL_REARRANGEMENT:-:[9127],LSM12->LSM12_homolog,chr17:42112003-42144987:-,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	HEC59_ENDOMETRIUM	0.15	0.56	0.5053	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CLIP4--FAM179A	20	11	CLIP4	20436	chr2:29390406:+	FAM179A	33900	chr2:29217591:+	ONLY_REF_SPLICE	YES	54	0	0.36	1	0.2527	0.139	LOCAL_REARRANGEMENT:+:[36332],CLIP4->CAP-Gly_domain_containing_linker_protein_family_member_4,chr2:29320571-29412509:+,FAM179A->chr2:29179477-29284239:+,family_with_sequence_similarity_179_member_A	HEC59_ENDOMETRIUM	0.36	1	0.3917	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	ZBTB20--LSAMP	20	8	ZBTB20	6598	chr3:114693213:-	LSAMP	53449	chr3:115571464:-	ONLY_REF_SPLICE	YES	3	0	0.9	1	0.2527	0.1011	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	HEC59_ENDOMETRIUM	0.9	1	0.3538	TRUE	0	0	0	2	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CTD-2280E9.1--PTPRZ1	20	0	CTD-2280E9.1	1099	chr5:121719165:-	PTPRZ1	26292	chr7:121671528:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2527	0	CTD-2280E9.1->chr5:121705457-121719263:-,PTPRZ1->chr7:121513143-121702090:+,protein_tyrosine_phosphatase,_receptor_type_Z1	HEC59_ENDOMETRIUM	1	1	0.2527	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	TPD52--ZNF704	17	7	TPD52	19734	chr8:80954855:-	ZNF704	42930	chr8:81555364:-	ONLY_REF_SPLICE	YES	139	3	0.15	0.89	0.2148	0.0884	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704	HEC59_ENDOMETRIUM	0.15	0.89	0.3032	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	PXN--MSI1	16	3	PXN	1155	chr12:120703420:-	MSI1	25359	chr12:120802558:-	ONLY_REF_SPLICE	YES	39	18	0.33	0.51	0.2021	0.0379	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[75559],PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	HEC59_ENDOMETRIUM	0.33	0.51	0.24	TRUE	0	1	0	1	1	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CAMKMT--SLC3A1	13	13	CAMKMT	4731	chr2:44617444:+	SLC3A1	28029	chr2:44502643:+	INCL_NON_REF_SPLICE	YES	40	0	0.39	1	0.1642	0.1642	LOCAL_REARRANGEMENT:+:[40456],CAMKMT->calmodulin-lysine_N-methyltransferase,chr2:44589089-44999731:+,SLC3A1->chr2:44502599-44548633:+,solute_carrier_family_3_member_1	HEC59_ENDOMETRIUM	0.39	1	0.3284	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CRLF3--AC091177.1	14	3	CRLF3	9742	chr17:29119454:-	AC091177.1	21961	chr17:29283618:-	INCL_NON_REF_SPLICE	YES	40	1	0.3	0.94	0.1769	0.0379	CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3,AC091177.1->chr17:29283298-29283979:-	HEC59_ENDOMETRIUM	0.3	0.94	0.2148	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CDK17--C12orf55	11	12	CDK17	1575	chr12:96793764:-	C12orf55	28219	chr12:96894612:+	ONLY_REF_SPLICE	YES	71	8	0.24	0.74	0.139	0.1516	LOCAL_INVERSION:-:+:[89011],CDK17->chr12:96672039-96794338:-,cyclin-dependent_kinase_17,C12orf55->chr12:96883349-97269333:+	HEC59_ENDOMETRIUM	0.24	0.74	0.2906	TRUE	0	0	0	2	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	LSM12--HDAC5	2	42	LSM12	3290	chr17:42141169:-	HDAC5	19227	chr17:42165966:-	ONLY_REF_SPLICE	YES	227	17	0.16	0.72	0.0253	0.5306	LOCAL_REARRANGEMENT:-:[9127],LSM12->LSM12_homolog,chr17:42112003-42144987:-,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	HEC59_ENDOMETRIUM	0.16	0.72	0.5559	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	PTEN--PAPSS2	11	5	PTEN	8443	chr10:89693008:+	PAPSS2	29265	chr10:89475489:+	ONLY_REF_SPLICE	YES	115	122	0.12	0.12	0.139	0.0632	PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog,PAPSS2->3'-phosphoadenosine_5'-phosphosulfate_synthase_2,chr10:89419370-89507462:+	HEC59_ENDOMETRIUM	0.12	0.12	0.2022	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	TGFBR2--AC116035.1	9	11	TGFBR2	1476	chr3:30648469:+	AC116035.1	16787	chr3:30568324:+	ONLY_REF_SPLICE	YES	29	0	0.41	1	0.1137	0.139	LOCAL_REARRANGEMENT:+:[79317],TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,AC116035.1->chr3:30566237-30568677:+	HEC59_ENDOMETRIUM	0.41	1	0.2527	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	TGFBR2--AC116035.1	7	13	TGFBR2	1476	chr3:30648469:+	AC116035.1	15667	chr3:30566199:+	INCL_NON_REF_SPLICE	YES	29	0	0.41	1	0.0884	0.1642	LOCAL_REARRANGEMENT:+:[79317],TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,AC116035.1->chr3:30566237-30568677:+	HEC59_ENDOMETRIUM	0.41	1	0.2526	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	ANXA3--FRAS1	8	4	ANXA3	5625	chr4:79494421:+	FRAS1	80073	chr4:79391132:+	ONLY_REF_SPLICE	YES	127	12	0.09	0.5	0.1011	0.0505	LOCAL_REARRANGEMENT:+:[7250],ANXA3->annexin_A3,chr4:79472673-79531597:+,FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+	HEC59_ENDOMETRIUM	0.09	0.5	0.1516	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CCDC157--MTMR3	8	3	CCDC157	10155	chr22:30770080:+	MTMR3	28136	chr22:30403103:+	ONLY_REF_SPLICE	YES	8	36	0.58	0.23	0.1011	0.0379	CCDC157->chr22:30752624-30774647:+,coiled-coil_domain_containing_157,MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3	HEC59_ENDOMETRIUM	0.23	0.58	0.139	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	RDX--ZC3H12C	6	3	RDX	4918	chr11:110143261:-	ZC3H12C	32172	chr11:110023644:+	ONLY_REF_SPLICE	YES	165	2	0.05	0.82	0.0758	0.0379	LOCAL_INVERSION:-:+:[3039],RDX->chr11:110045605-110167447:-,radixin,ZC3H12C->chr11:109964087-110042566:+,zinc_finger_CCCH-type_containing_12C	HEC59_ENDOMETRIUM	0.05	0.82	0.1137	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	TGFBR2--AC116035.1	3	15	TGFBR2	2551	chr3:30664765:+	AC116035.1	16787	chr3:30568324:+	ONLY_REF_SPLICE	YES	37	0	0.33	1	0.0379	0.1895	LOCAL_REARRANGEMENT:+:[79317],TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,AC116035.1->chr3:30566237-30568677:+	HEC59_ENDOMETRIUM	0.33	1	0.2274	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	FAM227A--SUN2	6	2	FAM227A	13163	chr22:39016217:-	SUN2	36602	chr22:39148670:-	ONLY_REF_SPLICE	YES	12	25	0.4	0.24	0.0758	0.0253	LOCAL_REARRANGEMENT:-:[78096],FAM227A->chr22:38974125-39052634:-,family_with_sequence_similarity_227_member_A,SUN2->Sad1_and_UNC84_domain_containing_2,chr22:39130730-39190148:-	HEC59_ENDOMETRIUM	0.24	0.4	0.1011	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	ANP32B--SEPT7	6	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0758	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	HEC59_ENDOMETRIUM	1	1	0.0758	TRUE	1	1	0	18	1	TRUE	ACH-000994
HEC59_ENDOMETRIUM	HECTD1--HEATR5A	6	0	HECTD1	43708	chr14:31569829:-	HEATR5A	66950	chr14:31817113:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0758	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:-:[83984],HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,HEATR5A->HEAT_repeat_containing_5A,chr14:31760994-31889788:-	HEC59_ENDOMETRIUM	1	1	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	LSM12--HDAC5	1	18	LSM12	3290	chr17:42141169:-	HDAC5	22454	chr17:42162523:-	ONLY_REF_SPLICE	NO	227	76	0.08	0.2	0.0126	0.2274	LOCAL_REARRANGEMENT:-:[9127],LSM12->LSM12_homolog,chr17:42112003-42144987:-,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	HEC59_ENDOMETRIUM	0.08	0.2	0.24	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CAMKMT--SLC3A1	4	4	CAMKMT	4731	chr2:44617444:+	SLC3A1	29491	chr2:44507855:+	ONLY_REF_SPLICE	YES	40	30	0.17	0.21	0.0505	0.0505	LOCAL_REARRANGEMENT:+:[40456],CAMKMT->calmodulin-lysine_N-methyltransferase,chr2:44589089-44999731:+,SLC3A1->chr2:44502599-44548633:+,solute_carrier_family_3_member_1	HEC59_ENDOMETRIUM	0.17	0.21	0.101	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CTB-35F21.1--PAIP2	5	0	CTB-35F21.1	2853	chr5:139101552:+	PAIP2	11996	chr5:138699448:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0	CTB-35F21.1->chr5:139064230-139124595:+,PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2	HEC59_ENDOMETRIUM	1	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	ADARB1--SNCA	4	1	ADARB1	1941	chr21:46494708:+	SNCA	35784	chr4:90756843:-	ONLY_REF_SPLICE	YES	1	7	0.83	0.42	0.0505	0.0126	ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+,SNCA->chr4:90645250-90759466:-,synuclein_alpha	HEC59_ENDOMETRIUM	0.42	0.83	0.0631	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CDK17--C12orf55	1	12	CDK17	2227	chr12:96793112:-	C12orf55	28219	chr12:96894612:+	ONLY_REF_SPLICE	NO	74	8	0.15	0.62	0.0126	0.1516	LOCAL_INVERSION:-:+:[89011],CDK17->chr12:96672039-96794338:-,cyclin-dependent_kinase_17,C12orf55->chr12:96883349-97269333:+	HEC59_ENDOMETRIUM	0.15	0.62	0.1642	TRUE	0	0	0	2	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	PXN--MSI1	3	4	PXN	1155	chr12:120703420:-	MSI1	23493	chr12:120806676:-	ONLY_REF_SPLICE	YES	39	3	0.15	0.7	0.0379	0.0505	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[75559],PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	HEC59_ENDOMETRIUM	0.15	0.7	0.0884	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	ST7--MET	3	3	ST7	1454	chr7:116593745:+	MET	40600	chr7:116339125:+	ONLY_REF_SPLICE	YES	64	131	0.09	0.04	0.0379	0.0379	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1],ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HEC59_ENDOMETRIUM	0.04	0.09	0.0758	TRUE	0	2	0	2	2	TRUE	ACH-000994
HEC59_ENDOMETRIUM	AL121578.2--CYBB	3	1	AL121578.2	3710	chrX:37808658:+	CYBB	19849	chrX:37668820:+	ONLY_REF_SPLICE	YES	0	4	1	0.5	0.0379	0.0126	LOCAL_REARRANGEMENT:+:[92686],AL121578.2->chrX:37765400-37808658:+,CYBB->chrX:37639264-37672714:+,cytochrome_b-245,_beta_polypeptide	HEC59_ENDOMETRIUM	0.5	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	LPHN2--AC079305.11	3	0	LPHN2	6881	chr1:82165493:+	AC079305.11	44597	chr2:177959356:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	LPHN2->Oncogene{Bushman},chr1:81771845-82458120:+,AC079305.11->chr2:177855236-178029244:-	HEC59_ENDOMETRIUM	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	SWI5--RP11-379C10.1	2	3	SWI5	5642	chr9:131048312:+	RP11-379C10.1	11690	chr9:130801586:-	ONLY_REF_SPLICE	YES	105	0	0.05	1	0.0253	0.0379	SWI5->SWI5_homologous_recombination_repair_protein,chr9:131037658-131051269:+,RP11-379C10.1->chr9:130801414-130819641:-	HEC59_ENDOMETRIUM	0.05	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CBLC--CEACAM16	1	6	CBLC	5135	chr19:45287658:+	CEACAM16	15630	chr19:45206619:+	ONLY_REF_SPLICE	YES	20	0	0.26	1	0.0126	0.0758	LOCAL_REARRANGEMENT:+:[67140],CBLC->Cbl_proto-oncogene_C,Oncogene{Bushman},chr19:45281126-45303891:+,CEACAM16->carcinoembryonic_antigen_related_cell_adhesion_molecule_16,chr19:45202421-45213986:+	HEC59_ENDOMETRIUM	0.26	1	0.0884	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	RIC8B--RFX4	2	1	RIC8B	8866	chr12:107219598:+	RFX4	33263	chr12:107033110:+	ONLY_REF_SPLICE	YES	62	1	0.05	0.75	0.0253	0.0126	LOCAL_REARRANGEMENT:+:[11792],RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+,RFX4->chr12:106976685-107156581:+,regulatory_factor_X4	HEC59_ENDOMETRIUM	0.05	0.75	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	DCAF6--TIPRL	2	0	DCAF6	3532	chr1:167921099:+	TIPRL	37985	chr1:168165785:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	DCAF6->DDB1_and_CUL4_associated_factor_6,chr1:167905021-168045081:+,TIPRL->TOR_signaling_pathway_regulator,chr1:168148171-168169950:+	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	FAM63B--LIPC	2	0	FAM63B	2044	chr15:59064434:+	LIPC	24871	chr15:58724192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,LIPC->chr15:58702768-58861151:+,lipase_C,_hepatic_type	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	GPC4--GPC3	2	0	GPC4	1685	chrX:132548834:-	GPC3	18198	chrX:132888203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},HGNC_GENEFAM,PROTCLUST,{Klijn_CCL:Ovary=1,Other=1},GPC4->chrX:132434131-132549518:-,glypican_4,GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	1	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	KDELC2--MDM2	2	0	KDELC2	8966	chr11:108348751:-	MDM2	22729	chr12:69214105:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	KDELC2->KDEL_motif_containing_2,chr11:108342832-108369159:-,MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	2	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	PBXIP1--RP11-201K10.3	2	0	PBXIP1	5820	chr1:154919893:-	RP11-201K10.3	13210	chr1:155145950:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1,RP11-201K10.3->chr1:155141885-155159748:-	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	RDX--ZC3H12C	2	0	RDX	4918	chr11:110143261:-	ZC3H12C	34547	chr11:110033998:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	LOCAL_INVERSION:-:+:[3039],RDX->chr11:110045605-110167447:-,radixin,ZC3H12C->chr11:109964087-110042566:+,zinc_finger_CCCH-type_containing_12C	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	RPS6KB1--VMP1	2	0	RPS6KB1	7326	chr17:57992064:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	4	0	3	2	TRUE	ACH-000994
HEC59_ENDOMETRIUM	WDHD1--DLGAP5	2	0	WDHD1	2507	chr14:55480203:-	DLGAP5	44227	chr14:55625459:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-,DLGAP5->chr14:55614830-55658396:-,discs_large_homolog_associated_protein_5	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	WDR46--PIGS	2	0	WDR46	1426	chr6:33256879:-	PIGS	19317	chr17:26882079:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	WDR46->WD_repeat_domain_46,chr6:33246885-33257304:-,PIGS->chr17:26880401-26898890:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_S	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	ZBTB20--LSAMP	1	3	ZBTB20	4428	chr3:114790066:-	LSAMP	53449	chr3:115571464:-	ONLY_REF_SPLICE	NO	5	0	0.44	1	0.0126	0.0379	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	HEC59_ENDOMETRIUM	0.44	1	0.0505	TRUE	0	0	0	2	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CRLF3--AC091177.1	1	2	CRLF3	8728	chr17:29120468:-	AC091177.1	21957	chr17:29283622:-	ONLY_REF_SPLICE	YES	36	1	0.08	0.75	0.0126	0.0253	CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3,AC091177.1->chr17:29283298-29283979:-	HEC59_ENDOMETRIUM	0.08	0.75	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	LINC00511--SLC39A11	1	2	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	NO	119	30	0.02	0.09	0.0126	0.0253	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	HEC59_ENDOMETRIUM	0.02	0.09	0.0379	TRUE	0	5	0	7	4	TRUE	ACH-000994
HEC59_ENDOMETRIUM	AL121578.2--CYBB	1	1	AL121578.2	2571	chrX:37798942:+	CYBB	19849	chrX:37668820:+	ONLY_REF_SPLICE	YES	7	4	0.22	0.33	0.0126	0.0126	LOCAL_REARRANGEMENT:+:[92686],AL121578.2->chrX:37765400-37808658:+,CYBB->chrX:37639264-37672714:+,cytochrome_b-245,_beta_polypeptide	HEC59_ENDOMETRIUM	0.22	0.33	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000994
LS123_LARGE_INTESTINE	MTHFD1L--CEP85L	21	9	MTHFD1L	28824	chr6:151336116:+	CEP85L	51738	chr6:118845083:-	ONLY_REF_SPLICE	YES	40	3	0.43	0.91	0.3166	0.1357	MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like,CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-	LS123_LARGE_INTESTINE	0.43	0.91	0.4523	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	CEP85L--STXBP5-AS1	6	5	CEP85L	19463	chr6:118801034:-	STXBP5-AS1	38553	chr6:147322679:-	ONLY_REF_SPLICE	YES	6	0	0.65	1	0.0905	0.0754	CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	LS123_LARGE_INTESTINE	0.65	1	0.1659	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	CEP85L--STXBP5-AS1	3	6	CEP85L	20571	chr6:118791700:-	STXBP5-AS1	38553	chr6:147322679:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0452	0.0905	CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	LS123_LARGE_INTESTINE	0.9	1	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	C17orf76-AS1--RPS6KC1	2	0	C17orf76-AS1	1593	chr17:16342728:+	RPS6KC1	27782	chr1:213415912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	C17orf76-AS1->chr17:16342136-16381992:+,RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1	LS123_LARGE_INTESTINE	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	HDHD1--RP11-1M18.1	2	0	HDHD1	6377	chrX:6995261:-	RP11-1M18.1	13169	chrX:6639585:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	HDHD1->chrX:6966961-7066231:-,RP11-1M18.1->chrX:6585906-6639585:-	LS123_LARGE_INTESTINE	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	LDLRAD3--TRIM44	2	0	LDLRAD3	1164	chr11:35965694:+	TRIM44	19552	chr11:35706807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	YOSHIHARA_TCGA_num_samples[LUAD:1|SKCM:1],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44	LS123_LARGE_INTESTINE	1	1	0.0302	TRUE	0	0	0	2	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	PRSS23--PICALM	2	0	PRSS23	8412	chr11:86534635:+	PICALM	25674	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},PRSS23->chr11:86502101-86663952:+,protease,_serine_23,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	LS123_LARGE_INTESTINE	1	1	0.0302	TRUE	0	3	0	5	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	RWDD3--FUNDC2	2	0	RWDD3	1161	chr1:95699871:+	FUNDC2	13240	chrX:154261678:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	RWDD3->RWD_domain_containing_3,chr1:95699711-95712781:+,FUNDC2->FUN14_domain_containing_2,chrX:154254255-154288578:+	LS123_LARGE_INTESTINE	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	CEP85L--STXBP5-AS1	1	3	CEP85L	20571	chr6:118791700:-	STXBP5-AS1	39656	chr6:147293206:-	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0151	0.0452	CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	LS123_LARGE_INTESTINE	0.8	1	0.0603	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	PPP1R14C--PLEKHG1	1	2	PPP1R14C	3540	chr6:150537992:+	PLEKHG1	10308	chr6:150959216:+	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0151	0.0302	PPP1R14C->chr6:150464212-150571493:+,protein_phosphatase_1_regulatory_inhibitor_subunit_14C,PLEKHG1->chr6:150920999-151164799:+,pleckstrin_homology_and_RhoGEF_domain_containing_G1	LS123_LARGE_INTESTINE	0.25	1	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	CEP85L--STXBP5-AS1	1	1	CEP85L	19463	chr6:118801034:-	STXBP5-AS1	49132	chr6:147181879:-	ONLY_REF_SPLICE	YES	6	2	0.25	0.5	0.0151	0.0151	CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	LS123_LARGE_INTESTINE	0.25	0.5	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	CEP85L--STXBP5-AS1	1	1	CEP85L	20571	chr6:118791700:-	STXBP5-AS1	46774	chr6:147185738:-	ONLY_REF_SPLICE	YES	1	1	0.67	0.67	0.0151	0.0151	CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	LS123_LARGE_INTESTINE	0.67	0.67	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	MYB--POGZ	1	1	MYB	16133	chr6:135524462:+	POGZ	26031	chr1:151414681:-	ONLY_REF_SPLICE	YES	7	7	0.22	0.22	0.0151	0.0151	MYB->ArcherDX_panel,FoundationOne_panel,MYB_proto-oncogene,_transcription_factor,Oncogene{Bushman},chr6:135502453-135540311:+,POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain	LS123_LARGE_INTESTINE	0.22	0.22	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	RP11-466I1.1--CTD-3012A18.1	1	1	RP11-466I1.1	2424	chr11:29233312:+	CTD-3012A18.1	8905	chr11:29573907:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0.0151	RP11-466I1.1->chr11:29181503-29288281:+,CTD-3012A18.1->chr11:29540623-29574186:+	LS123_LARGE_INTESTINE	1	1	0.0302	TRUE	0	2	0	4	2	TRUE	ACH-000501
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RRP1B--TRAPPC10	41	53	RRP1B	10538	chr21:45105670:+	TRAPPC10	37490	chr21:45502669:+	ONLY_REF_SPLICE	YES	187	54	0.33	0.64	0.5431	0.702	{Klijn_CCL:Lymphoid=1},RRP1B->chr21:45079429-45115958:+,ribosomal_RNA_processing_1B,TRAPPC10->chr21:45432200-45526433:+,trafficking_protein_particle_complex_10	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.64	1.2451	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM5--QRICH1	48	18	RBM5	5377	chr3:50131308:+	QRICH1	32581	chr3:49114471:-	ONLY_REF_SPLICE	YES	79	61	0.46	0.52	0.6358	0.2384	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.52	0.8742	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RP11-132N15.1	40	26	PVT1	1202	chr8:128806980:+	RP11-132N15.1	28454	chr3:187721776:-	INCL_NON_REF_SPLICE	YES	147	0	0.31	1	0.5298	0.3444	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-132N15.1->chr3:187715210-187721778:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	0.8742	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLYBL--NISCH	27	1	CLYBL	1093	chr13:100259011:+	NISCH	22444	chr3:52491859:+	ONLY_REF_SPLICE	YES	0	34	1	0.45	0.3576	0.0132	CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like,NISCH->chr3:52489134-52527087:+,nischarin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	1	0.3708	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NF1--RP11-848P1.9	19	27	NF1	1443	chr17:29422387:+	RP11-848P1.9	79958	chr17:29343913:+	ONLY_REF_SPLICE	YES	7	0	0.87	1	0.2517	0.3576	LOCAL_REARRANGEMENT:+:[1800],NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,RP11-848P1.9->chr17:29335515-29420145:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.6093	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RRP1B--TRAPPC10	12	45	RRP1B	9518	chr21:45104531:+	TRAPPC10	37490	chr21:45502669:+	ONLY_REF_SPLICE	YES	259	54	0.18	0.51	0.1589	0.5961	{Klijn_CCL:Lymphoid=1},RRP1B->chr21:45079429-45115958:+,ribosomal_RNA_processing_1B,TRAPPC10->chr21:45432200-45526433:+,trafficking_protein_particle_complex_10	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.51	0.755	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NF1--RP11-848P1.9	9	22	NF1	1443	chr17:29422387:+	RP11-848P1.9	81067	chr17:29348928:+	ONLY_REF_SPLICE	YES	7	1	0.82	0.97	0.1192	0.2914	LOCAL_REARRANGEMENT:+:[1800],NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,RP11-848P1.9->chr17:29335515-29420145:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.97	0.4106	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--PCED1B-AS1	14	0	RPL23AP53	2207	chr8:180804:-	PCED1B-AS1	9973	chr12:47604520:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1854	0	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,PCED1B-AS1->PCED1B_antisense_RNA_1,chr12:47599681-47610239:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1854	TRUE	0	0	0	3	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RP11-132N15.1	5	29	PVT1	6936	chr8:128867565:+	RP11-132N15.1	28454	chr3:187721776:-	INCL_NON_REF_SPLICE	YES	134	0	0.2	1	0.0662	0.3841	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-132N15.1->chr3:187715210-187721778:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.4503	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RP11-132N15.1	4	29	PVT1	2520	chr8:128808317:+	RP11-132N15.1	28454	chr3:187721776:-	INCL_NON_REF_SPLICE	YES	161	0	0.17	1	0.053	0.3841	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-132N15.1->chr3:187715210-187721778:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.4371	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RP11-132N15.1	4	21	PVT1	1202	chr8:128806980:+	RP11-132N15.1	29542	chr3:187715546:-	ONLY_REF_SPLICE	YES	147	1	0.15	0.96	0.053	0.2782	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-132N15.1->chr3:187715210-187721778:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.96	0.3312	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RP11-132N15.2	1	33	PVT1	1202	chr8:128806980:+	RP11-132N15.2	29279	chr3:187720367:-	ONLY_REF_SPLICE	NO	147	0	0.19	1	0.0132	0.4371	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-132N15.2->chr3:187719488-187721194:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.4503	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RP11-132N15.3	7	2	PVT1	1202	chr8:128806980:+	RP11-132N15.3	31976	chr3:187676751:-	ONLY_REF_SPLICE	YES	147	16	0.06	0.36	0.0927	0.0265	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-132N15.3->chr3:187676563-187694195:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.36	0.1192	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	6	0	PTMA	6024	chr2:232576657:+	NCL	16455	chr2:232325427:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0795	0	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0795	TRUE	0	0	0	5	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM117--RP11-271K11.5	4	1	TMEM117	2535	chr12:44238731:+	RP11-271K11.5	26295	chr17:29365672:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.053	0.0132	TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117,RP11-271K11.5->chr17:29365593-29386139:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLYBL--NISCH	4	0	CLYBL	1093	chr13:100259011:+	NISCH	24749	chr3:52504875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.053	0	CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like,NISCH->chr3:52489134-52527087:+,nischarin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAPGEF5--STEAP1B	4	0	RAPGEF5	8732	chr7:22306583:-	STEAP1B	47505	chr7:22459455:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.053	0	LOCAL_REARRANGEMENT:-:[62300],RAPGEF5->Rap_guanine_nucleotide_exchange_factor_5,chr7:22157856-22396763:-,STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.053	TRUE	0	1	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRCC5--RPL37A	4	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.053	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.053	TRUE	1	1	0	8	1	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM5--QRICH1	1	11	RBM5	5285	chr3:50131216:+	QRICH1	32581	chr3:49114471:-	ONLY_REF_SPLICE	NO	92	61	0.12	0.16	0.0132	0.1457	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.16	0.1589	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD37--CHPF2	3	0	CD37	6370	chr19:49843797:+	CHPF2	12259	chr7:150931090:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	CD37->CD37_molecule,chr19:49838428-49846592:+,CHPF2->chondroitin_polymerizing_factor_2,chr7:150929575-150935908:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FADS2--TMEM258	3	0	FADS2	1049	chr11:61560500:+	TMEM258	29821	chr11:61558074:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[178],FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,TMEM258->chr11:61535973-61560274:-,transmembrane_protein_258	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	TRUE	0	2	0	5	2	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFMBT1--RBM5	2	3	SFMBT1	1935	chr3:53079832:-	RBM5	42976	chr3:50142982:+	ONLY_REF_SPLICE	YES	5	92	0.5	0.05	0.0265	0.0397	SFMBT1->Scm-like_with_four_mbt_domains_1,chr3:52937588-53080766:-,RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.5	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFMBT1--RBM5	1	5	SFMBT1	5961	chr3:53052102:-	RBM5	42976	chr3:50142982:+	ONLY_REF_SPLICE	YES	6	92	0.5	0.06	0.0132	0.0662	SFMBT1->Scm-like_with_four_mbt_domains_1,chr3:52937588-53080766:-,RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.5	0.0794	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL6--B2M	2	0	BCL6	1318	chr3:187463198:-	B2M	21387	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Whole_Blood=1},BCL6->B-cell_CLL/lymphoma_6,Oncogene{Bushman},chr3:187439165-187463515:-,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	1	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL6--CCDC125	2	0	BCL6	1318	chr3:187463198:-	CCDC125	33759	chr5:68581294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	BCL6->B-cell_CLL/lymphoma_6,Oncogene{Bushman},chr3:187439165-187463515:-,CCDC125->chr5:68576002-68628636:-,coiled-coil_domain_containing_125	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPRIN1--HNRNPDL	2	0	CAPRIN1	18078	chr11:34118220:+	HNRNPDL	30820	chr4:83346036:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	CAPRIN1->cell_cycle_associated_protein_1,chr11:34073230-34122703:+,HNRNPDL->chr4:83343717-83351294:-,heterogeneous_nuclear_ribonucleoprotein_D_like	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTDSPL2--B2M	2	0	CTDSPL2	1539	chr15:44719970:+	B2M	29463	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	4	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUX1--RUVBL1	2	0	CUX1	1415	chr7:101459373:+	RUVBL1	75153	chr3:127787756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX21--LIMK2	2	0	DDX21	4884	chr10:70723225:+	LIMK2	33014	chr22:31664130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	DDX21->DEAD-box_helicase_21,chr10:70715884-70744829:+,LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2B--KIAA0101	2	0	MEF2B	1511	chr19:19302890:-	KIAA0101	20709	chr15:64669104:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	MEF2B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:19256377-19303400:-,myocyte_enhancer_factor_2B,KIAA0101->KIAA0101,chr15:64657193-64679886:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PQLC1--NFATC1	2	0	PQLC1	7125	chr18:77703329:-	NFATC1	31197	chr18:77221311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Whole_Blood=1},PQLC1->PQ_loop_repeat_containing_1,chr18:77662420-77711664:-,NFATC1->Oncogene{Bushman},chr18:77155856-77289325:+,nuclear_factor_of_activated_T-cells_1	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTK2B--PPP2R2A	2	0	PTK2B	6168	chr8:27183198:+	PPP2R2A	43711	chr8:26196406:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	PTK2B->chr8:27168999-27316903:+,protein_tyrosine_kinase_2_beta,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	R3HDM1--ZRANB3	2	0	R3HDM1	26958	chr2:136437894:+	ZRANB3	39021	chr2:136262066:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	LOCAL_INVERSION:+:-:[219],R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	R3HDM1--ZRANB3	2	0	R3HDM1	28757	chr2:136467801:+	ZRANB3	39021	chr2:136262066:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	LOCAL_INVERSION:+:-:[219],R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--PCED1B-AS1	2	0	RPL23AP53	2207	chr8:180804:-	PCED1B-AS1	13734	chr12:47599928:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,PCED1B-AS1->PCED1B_antisense_RNA_1,chr12:47599681-47610239:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	2	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A1--AATF	2	0	SLC38A1	2492	chr12:46662309:-	AATF	34301	chr17:35343916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1,AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG8--ITGB3BP	2	0	SNHG8	1429	chr4:119200292:+	ITGB3BP	16441	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YAF2--PPHLN1	2	0	YAF2	1751	chr12:42631401:-	PPHLN1	43594	chr12:42835117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=2,Pancreas=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[98],YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,PPHLN1->chr12:42632249-42853517:+,periphilin_1	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	2	0	4	1	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAMC1--RGL1	1	2	LAMC1	1675	chr1:182993269:+	RGL1	35198	chr1:183666538:+	ONLY_REF_SPLICE	NO	2	1	0.6	0.75	0.0132	0.0265	LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1,RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.75	0.0397	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAMC1--RGL1	1	1	LAMC1	1675	chr1:182993269:+	RGL1	36308	chr1:183711261:+	ONLY_REF_SPLICE	YES	2	1	0.5	0.67	0.0132	0.0132	LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1,RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.67	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000371
KYM1_SOFT_TISSUE	WWOX--VAT1L	78	23	WWOX	21090	chr16:78420845:+	VAT1L	34273	chr16:77850818:+	ONLY_REF_SPLICE	YES	44	0	0.7	1	0.9154	0.2699	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	KYM1_SOFT_TISSUE	0.7	1	1.1853	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	CAPRIN1--CAT	55	21	CAPRIN1	11211	chr11:34104588:+	CAT	26717	chr11:34470739:+	ONLY_REF_SPLICE	YES	212	142	0.26	0.35	0.6454	0.2464	CAPRIN1->cell_cycle_associated_protein_1,chr11:34073230-34122703:+,CAT->catalase,chr11:34460472-34493609:+	KYM1_SOFT_TISSUE	0.26	0.35	0.8918	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	POC5--COL4A3BP	50	20	POC5	13909	chr5:74981032:-	COL4A3BP	24074	chr5:74722303:-	ONLY_REF_SPLICE	YES	21	122	0.77	0.36	0.5868	0.2347	POC5->POC5_centriolar_protein,chr5:74969949-75013313:-,COL4A3BP->chr5:74664311-74807963:-,collagen_type_IV_alpha_3_binding_protein	KYM1_SOFT_TISSUE	0.36	0.77	0.8215	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	KCTD21--GAB2	41	0	KCTD21	1250	chr11:77899619:-	GAB2	23984	chr11:77934722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4811	0	LOCAL_REARRANGEMENT:-:[26475],KCTD21->chr11:77882295-77899868:-,potassium_channel_tetramerization_domain_containing_21,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	KYM1_SOFT_TISSUE	1	1	0.4811	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	KCTD21--GAB2	5	4	KCTD21	2435	chr11:77897727:-	GAB2	23984	chr11:77934722:-	ONLY_REF_SPLICE	YES	2	26	0.82	0.26	0.0587	0.0469	LOCAL_REARRANGEMENT:-:[26475],KCTD21->chr11:77882295-77899868:-,potassium_channel_tetramerization_domain_containing_21,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	KYM1_SOFT_TISSUE	0.26	0.82	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	CTD-2251F13.1--PRKD1	4	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	KYM1_SOFT_TISSUE	1	1	0.0469	TRUE	0	3	0	9	3	TRUE	ACH-000607
KYM1_SOFT_TISSUE	NAALADL2--NLGN1	3	3	NAALADL2	2201	chr3:174158822:+	NLGN1	58131	chr3:173993105:+	ONLY_REF_SPLICE	YES	0	24	1	0.2	0.0352	0.0352	NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+,NLGN1->chr3:173114074-174004434:+,neuroligin_1	KYM1_SOFT_TISSUE	0.2	1	0.0704	TRUE	0	1	0	1	1	TRUE	ACH-000607
KYM1_SOFT_TISSUE	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	KYM1_SOFT_TISSUE	1	1	0.0235	TRUE	0	3	0	8	3	TRUE	ACH-000607
KYM1_SOFT_TISSUE	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	KYM1_SOFT_TISSUE	1	1	0.0235	TRUE	0	3	0	9	3	TRUE	ACH-000607
KYM1_SOFT_TISSUE	POLE2--NEMF	2	0	POLE2	3464	chr14:50146443:-	NEMF	47212	chr14:50262662:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	LOCAL_REARRANGEMENT:-:[94857],POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit,NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor	KYM1_SOFT_TISSUE	1	1	0.0235	TRUE	0	0	0	3	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	RGS5--CABP1	2	0	RGS5	12338	chr1:163122340:-	CABP1	29075	chr12:121097681:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	RGS5->chr1:163080911-163291577:-,regulator_of_G-protein_signaling_5,CABP1->calcium_binding_protein_1,chr12:121078355-121105127:+	KYM1_SOFT_TISSUE	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	RP11-440L14.1--CTBP1	2	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	KYM1_SOFT_TISSUE	1	1	0.0235	TRUE	0	2	0	7	2	TRUE	ACH-000607
KYM1_SOFT_TISSUE	VPS35--NETO2	2	0	VPS35	1388	chr16:46723043:-	NETO2	33009	chr16:47117712:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-,NETO2->chr16:47111614-47177908:-,neuropilin_and_tolloid_like_2	KYM1_SOFT_TISSUE	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	NAALADL2--NLGN1	1	3	NAALADL2	4000	chr3:174177102:+	NLGN1	58131	chr3:173993105:+	ONLY_REF_SPLICE	YES	1	24	0.8	0.14	0.0117	0.0352	NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+,NLGN1->chr3:173114074-174004434:+,neuroligin_1	KYM1_SOFT_TISSUE	0.14	0.8	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	AL035610.2--AP001604.3	1	1	AL035610.2	7972	chr21:29535921:-	AP001604.3	16956	chr21:28771893:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0117	0.0117	AL035610.2->chr21:29488413-29600986:-,AP001604.3->chr21:28731204-28820898:-	KYM1_SOFT_TISSUE	1	1	0.0234	TRUE	0	2	0	3	2	TRUE	ACH-000607
KYM1_SOFT_TISSUE	CTD-2251F13.1--PRKD1	1	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	12223	chr14:30660656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0117	0.0117	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	KYM1_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	4	0	TRUE	ACH-000607
NCIH838_LUNG	PPIA--OGDH	759	232	PPIA	1114	chr7:44836392:+	OGDH	26821	chr7:44733424:+	ONLY_REF_SPLICE	YES	1247	62	0.44	0.94	6.2828	1.9204	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[87614],PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A,OGDH->chr7:44646171-44748665:+,oxoglutarate_dehydrogenase	NCIH838_LUNG	0.44	0.94	8.2032	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	ACBD6--RABGAP1L	226	61	ACBD6	7351	chr1:180366651:-	RABGAP1L	53724	chr1:174926594:+	ONLY_REF_SPLICE	YES	238	20	0.55	0.93	1.8708	0.5049	ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+	NCIH838_LUNG	0.55	0.93	2.3757	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	BMPR2--TYW5	119	36	BMPR2	3957	chr2:203332412:+	TYW5	37653	chr2:200804856:-	ONLY_REF_SPLICE	YES	28	61	0.85	0.72	0.9851	0.298	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,TYW5->chr2:200794698-200820459:-,tRNA-yW_synthesizing_protein_5	NCIH838_LUNG	0.72	0.85	1.2831	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	MLLT3--TMIGD1	83	67	MLLT3	5117	chr9:20448121:-	TMIGD1	28606	chr17:28656547:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6871	0.5546	MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3,TMIGD1->chr17:28643351-28661077:-,transmembrane_and_immunoglobulin_domain_containing_1	NCIH838_LUNG	1	1	1.2417	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	CDH13--DDX19B	30	17	CDH13	1335	chr16:82660742:+	DDX19B	40238	chr16:70346512:+	ONLY_REF_SPLICE	YES	4	249	0.92	0.16	0.2483	0.1407	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	NCIH838_LUNG	0.16	0.92	0.389	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	BMPR2--TYW5	5	23	BMPR2	3957	chr2:203332412:+	TYW5	38698	chr2:200803793:-	ONLY_REF_SPLICE	YES	28	61	0.5	0.31	0.0414	0.1904	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,TYW5->chr2:200794698-200820459:-,tRNA-yW_synthesizing_protein_5	NCIH838_LUNG	0.31	0.5	0.2318	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	ASCC1--DNAJB12	9	6	ASCC1	10097	chr10:73956569:-	DNAJB12	26732	chr10:74104885:-	ONLY_REF_SPLICE	YES	111	122	0.12	0.11	0.0745	0.0497	ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,DNAJB12->DnaJ_heat_shock_protein_family_(Hsp40)_member_B12,chr10:74092588-74114988:-	NCIH838_LUNG	0.11	0.12	0.1242	TRUE	0	0	0	2	0	TRUE	ACH-000416
NCIH838_LUNG	FOCAD--ASIC2	9	4	FOCAD	1518	chr9:20658825:+	ASIC2	71103	chr17:31416008:-	ONLY_REF_SPLICE	YES	6	0	0.68	1	0.0745	0.0331	FOCAD->chr9:20658308-20995954:+,focadhesin,ASIC2->acid_sensing_ion_channel_subunit_2,chr17:31340105-32501983:-	NCIH838_LUNG	0.68	1	0.1076	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	CDH13--DDX19B	3	22	CDH13	2482	chr16:82671372:+	DDX19B	40238	chr16:70346512:+	ONLY_REF_SPLICE	YES	4	249	0.86	0.09	0.0248	0.1821	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	NCIH838_LUNG	0.09	0.86	0.2069	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	TYW5--ALS2CR11	8	2	TYW5	10942	chr2:200803656:-	ALS2CR11	42191	chr2:202352625:-	ONLY_REF_SPLICE	YES	42	1	0.19	0.91	0.0662	0.0166	TYW5->chr2:200794698-200820459:-,tRNA-yW_synthesizing_protein_5,ALS2CR11->amyotrophic_lateral_sclerosis_2_chromosome_region_candidate_11,chr2:202352148-202483901:-	NCIH838_LUNG	0.19	0.91	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	AP003900.6--AC008132.1	5	8	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	6	1	0.68	0.93	0.0414	0.0662	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH838_LUNG	0.68	0.93	0.1076	TRUE	0	0	0	11	0	TRUE	ACH-000416
NCIH838_LUNG	CDH13--DDX19B	2	15	CDH13	2482	chr16:82671372:+	DDX19B	41384	chr16:70348805:+	ONLY_REF_SPLICE	YES	4	194	0.81	0.08	0.0166	0.1242	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	NCIH838_LUNG	0.08	0.81	0.1408	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	CDH13--DDX19B	3	11	CDH13	1335	chr16:82660742:+	DDX19B	41384	chr16:70348805:+	ONLY_REF_SPLICE	YES	4	194	0.78	0.07	0.0248	0.0911	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	NCIH838_LUNG	0.07	0.78	0.1159	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	CDH13--DDX19B	1	16	CDH13	3588	chr16:82673070:+	DDX19B	41384	chr16:70348805:+	ONLY_REF_SPLICE	YES	3	194	0.85	0.08	0.0083	0.1324	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	NCIH838_LUNG	0.08	0.85	0.1407	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	EMC2--EIF3E	4	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH838_LUNG	1	1	0.0331	TRUE	0	0	0	12	0	TRUE	ACH-000416
NCIH838_LUNG	AP003900.6--AC008132.1	3	3	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	6	4	0.5	0.6	0.0248	0.0248	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH838_LUNG	0.5	0.6	0.0496	TRUE	0	0	0	13	0	TRUE	ACH-000416
NCIH838_LUNG	TYW5--ALS2CR11	3	2	TYW5	10942	chr2:200803656:-	ALS2CR11	37600	chr2:202359482:-	ONLY_REF_SPLICE	YES	42	0	0.11	1	0.0248	0.0166	TYW5->chr2:200794698-200820459:-,tRNA-yW_synthesizing_protein_5,ALS2CR11->amyotrophic_lateral_sclerosis_2_chromosome_region_candidate_11,chr2:202352148-202483901:-	NCIH838_LUNG	0.11	1	0.0414	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	BMPR2--ALS2CR11	2	4	BMPR2	3957	chr2:203332412:+	ALS2CR11	51231	chr2:202352625:-	ONLY_REF_SPLICE	YES	28	1	0.18	0.86	0.0166	0.0331	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,ALS2CR11->amyotrophic_lateral_sclerosis_2_chromosome_region_candidate_11,chr2:202352148-202483901:-	NCIH838_LUNG	0.18	0.86	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	DNAJC1--CLASP2	3	0	DNAJC1	3193	chr10:22217435:-	CLASP2	26105	chr3:33705007:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-,CLASP2->chr3:33537737-33759848:-,cytoplasmic_linker_associated_protein_2	NCIH838_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	RP11-435B5.4--TTLL7	2	3	RP11-435B5.4	2843	chr1:143465380:-	TTLL7	21229	chr1:84417659:-	ONLY_REF_SPLICE	YES	31	7	0.14	0.42	0.0166	0.0248	RP11-435B5.4->chr1:143354963-143467632:-,TTLL7->chr1:84330711-84464833:-,tubulin_tyrosine_ligase_like_7	NCIH838_LUNG	0.14	0.42	0.0414	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	AC113189.5--AKT2	2	0	AC113189.5	1155	chr17:7487236:-	AKT2	16609	chr19:40771258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	AC113189.5->chr17:7485282-7487390:-,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	ACTN4--DENND3	2	0	ACTN4	1259	chr19:39138547:+	DENND3	35008	chr8:142160933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,DENND3->DENN_domain_containing_3,chr8:142127377-142205907:+	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	AFMID--ATP6V0E1	2	0	AFMID	2467	chr17:76187141:+	ATP6V0E1	17822	chr5:172461402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	AFMID->arylformamidase,chr17:76183398-76203782:+,ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	BRWD1--FAU	2	0	BRWD1	31046	chr21:40590078:-	FAU	58433	chr11:64888278:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,FAU->Finkel-Biskis-Reilly_murine_sarcoma_virus_(FBR-MuSV)_ubiquitously_expressed,chr11:64888100-64889945:-	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	DANCR--ITGB3BP	2	0	DANCR	1530	chr4:53579126:+	ITGB3BP	18619	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	9	0	TRUE	ACH-000416
NCIH838_LUNG	DNAJC24--TASP1	2	0	DNAJC24	2020	chr11:31392406:+	TASP1	38389	chr20:13398168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,TASP1->chr20:13246709-13619587:-,taspase_1	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	EIF2B5--SRRM1	2	0	EIF2B5	2699	chr3:183854524:+	SRRM1	27077	chr1:24977900:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	EIF2B5->chr3:183852826-184402546:+,eukaryotic_translation_initiation_factor_2B_subunit_epsilon,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	GPBP1L1--EIF3E	2	0	GPBP1L1	3538	chr1:46151248:-	EIF3E	38569	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	HIST1H2BC--LRIG2	2	0	HIST1H2BC	1412	chr6:26123743:-	LRIG2	7272	chr1:113633940:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	HIST1H2BC->chr6:26115101-26124154:-,histone_cluster_1,_H2bc,LRIG2->chr1:113615831-113674882:+,leucine-rich_repeats_and_immunoglobulin_like_domains_2	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	IPO11--RPS23	2	0	IPO11	13235	chr5:61770291:+	RPS23	47045	chr5:81572074:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	IPO11->chr5:61699799-61924409:+,importin_11,RPS23->chr5:81569177-81574396:-,ribosomal_protein_S23	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	KPNA6--PPFIBP1	2	0	KPNA6	6202	chr1:32623962:+	PPFIBP1	37141	chr12:27802943:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6,PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	MLLT3--TMIGD1	2	0	MLLT3	5117	chr9:20448121:-	TMIGD1	29885	chr17:28652112:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3,TMIGD1->chr17:28643351-28661077:-,transmembrane_and_immunoglobulin_domain_containing_1	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	MLLT3--TMIGD1	2	0	MLLT3	5117	chr9:20448121:-	TMIGD1	32268	chr17:28644251:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3,TMIGD1->chr17:28643351-28661077:-,transmembrane_and_immunoglobulin_domain_containing_1	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	MRAS--WDR41	2	0	MRAS	4937	chr3:138091918:+	WDR41	24103	chr5:76760634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	MRAS->chr3:138066539-138124375:+,muscle_RAS_oncogene_homolog,WDR41->WD_repeat_domain_41,chr5:76721795-76916436:-	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	MYO1C--PITPNA	2	0	MYO1C	2213	chr17:1394894:-	PITPNA	32388	chr17:1451681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[24906],MYO1C->chr17:1367392-1396106:-,myosin_IC,PITPNA->chr17:1421012-1466110:-,phosphatidylinositol_transfer_protein_alpha	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	N4BP1--NETO2	2	0	N4BP1	2735	chr16:48643686:-	NETO2	21259	chr16:47165936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	N4BP1->NEDD4_binding_protein_1,chr16:48572637-48654059:-,NETO2->chr16:47111614-47177908:-,neuropilin_and_tolloid_like_2	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	N4BP2--KANSL2	2	0	N4BP2	2302	chr4:40075171:+	KANSL2	43082	chr12:49048843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	N4BP2->NEDD4_binding_protein_2,chr4:40058446-40159872:+,KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	PPP2R5E--RPL17	2	0	PPP2R5E	2760	chr14:64006247:-	RPL17	27902	chr18:47017297:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	PPP2R5E->chr14:63838075-64010092:-,protein_phosphatase_2_regulatory_subunit_B',_epsilon,RPL17->chr18:47014851-47018906:-,ribosomal_protein_L17	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	PSMD13--HP1BP3	2	0	PSMD13	5571	chr11:247448:+	HP1BP3	20389	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	PSMD13->chr11:236546-252983:+,proteasome_26S_subunit,_non-ATPase_13,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	PSORS1C1--HMGB1	2	0	PSORS1C1	1142	chr6:31082668:+	HMGB1	19646	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	PSORS1C1->chr6:31082527-31107869:+,psoriasis_susceptibility_1_candidate_1,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	RC3H2--DNMBP	2	0	RC3H2	9887	chr9:125639750:-	DNMBP	53234	chr10:101640118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	RC3H2->chr9:125606835-125667620:-,ring_finger_and_CCCH-type_domains_2,DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	RP11-58C22.1--TCF25	2	0	RP11-58C22.1	2618	chr16:76669520:+	TCF25	9050	chr16:89949759:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	RP11-58C22.1->chr16:76587314-76669520:+,TCF25->chr16:89940000-89977792:+,transcription_factor_25	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	TOPORS--VAMP3	2	0	TOPORS	2315	chr9:32550772:-	VAMP3	13084	chr1:7837220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	TOPORS->Oncogene{Bushman},TOP1_binding_arginine/serine_rich_protein,chr9:32540542-32552551:-,VAMP3->chr1:7831329-7841492:+,vesicle_associated_membrane_protein_3	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	UBAP1--PHF20	2	0	UBAP1	1236	chr9:34179238:+	PHF20	17207	chr20:34388016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	UCHL1--GIPC1	2	0	UCHL1	1597	chr4:41259026:+	GIPC1	15134	chr19:14593818:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1,GIPC1->GIPC_PDZ_domain_containing_family_member_1,chr19:14588572-14606944:-	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	WDR41--TBCA	2	0	WDR41	7042	chr5:76785282:-	TBCA	32720	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},LOCAL_REARRANGEMENT:-:[70555],WDR41->WD_repeat_domain_41,chr5:76721795-76916436:-,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	NCIH838_LUNG	1	1	0.0166	TRUE	1	1	0	3	0	TRUE	ACH-000416
NCIH838_LUNG	ZC3H4--CCDC61	2	0	ZC3H4	2199	chr19:47615681:-	CCDC61	30293	chr19:46519952:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	ZC3H4->chr19:47567444-47617009:-,zinc_finger_CCCH-type_containing_4,CCDC61->chr19:46498339-46524576:+,coiled-coil_domain_containing_61	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	RP11-435B5.4--TTLL7	1	3	RP11-435B5.4	2843	chr1:143465380:-	TTLL7	20818	chr1:84418070:-	ONLY_REF_SPLICE	YES	31	6	0.11	0.4	0.0083	0.0248	RP11-435B5.4->chr1:143354963-143467632:-,TTLL7->chr1:84330711-84464833:-,tubulin_tyrosine_ligase_like_7	NCIH838_LUNG	0.11	0.4	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000416
CORL279_LUNG	BNIP3--MARCH6	200	232	BNIP3	1171	chr10:133795265:-	MARCH6	31803	chr5:10415600:+	ONLY_REF_SPLICE	YES	869	987	0.33	0.3	2.5756	2.9877	{Klijn_CCL:Lung=1},BNIP3->BCL2/adenovirus_E1B_19kDa_interacting_protein_3,Oncogene{Bushman},chr10:133781578-133795435:-,MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6	CORL279_LUNG	0.3	0.33	5.5633	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	WDR59--GINS3	67	38	WDR59	6054	chr16:74999671:-	GINS3	44260	chr16:58420525:+	ONLY_REF_SPLICE	YES	15	0	0.88	1	0.8628	0.4894	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	CORL279_LUNG	0.88	1	1.3522	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	CHD2--AGBL1	64	38	CHD2	12938	chr15:93472321:+	AGBL1	64295	chr15:86768145:+	ONLY_REF_SPLICE	YES	84	0	0.55	1	0.8242	0.4894	{Klijn_CCL:Lung=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,AGBL1->ATP/GTP_binding_protein-like_1,chr15:86685227-87572283:+	CORL279_LUNG	0.55	1	1.3136	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	WIPF2--RAPGEFL1	58	5	WIPF2	1189	chr17:38375744:+	RAPGEFL1	22638	chr17:38337868:+	ONLY_REF_SPLICE	YES	12	48	0.84	0.57	0.7469	0.0644	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	CORL279_LUNG	0.57	0.84	0.8113	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	BNIP3--MARCH6	1	232	BNIP3	1171	chr10:133795265:-	MARCH6	31788	chr5:10415585:+	ONLY_REF_SPLICE	YES	869	1055	0.21	0.18	0.0129	2.9877	{Klijn_CCL:Lung=1},BNIP3->BCL2/adenovirus_E1B_19kDa_interacting_protein_3,Oncogene{Bushman},chr10:133781578-133795435:-,MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6	CORL279_LUNG	0.18	0.21	3.0006	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	CASC11--TMEM65	40	29	CASC11	1143	chr8:128746071:-	TMEM65	16518	chr8:125343033:-	ONLY_REF_SPLICE	YES	10	78	0.87	0.47	0.5151	0.3735	CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-,TMEM65->chr8:125324231-125384933:-,transmembrane_protein_65	CORL279_LUNG	0.47	0.87	0.8886	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	CHD2--AGBL1	2	23	CHD2	12938	chr15:93472321:+	AGBL1	65333	chr15:86790902:+	ONLY_REF_SPLICE	YES	84	0	0.23	1	0.0258	0.2962	{Klijn_CCL:Lung=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,AGBL1->ATP/GTP_binding_protein-like_1,chr15:86685227-87572283:+	CORL279_LUNG	0.23	1	0.322	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	WIPF2--RAPGEFL1	5	6	WIPF2	1214	chr17:38375769:+	RAPGEFL1	22638	chr17:38337868:+	ONLY_REF_SPLICE	YES	19	48	0.37	0.19	0.0644	0.0773	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	CORL279_LUNG	0.19	0.37	0.1417	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	WDR59--GINS3	4	8	WDR59	6054	chr16:74999671:-	GINS3	46010	chr16:58426134:+	ONLY_REF_SPLICE	YES	15	18	0.44	0.4	0.0515	0.103	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	CORL279_LUNG	0.4	0.44	0.1545	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	CHD2--AGBL1	2	12	CHD2	11876	chr15:93470560:+	AGBL1	64295	chr15:86768145:+	ONLY_REF_SPLICE	YES	55	0	0.2	1	0.0258	0.1545	{Klijn_CCL:Lung=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,AGBL1->ATP/GTP_binding_protein-like_1,chr15:86685227-87572283:+	CORL279_LUNG	0.2	1	0.1803	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	CASC11--TMEM65	1	14	CASC11	1143	chr8:128746071:-	TMEM65	18631	chr8:125335616:-	ONLY_REF_SPLICE	YES	10	211	0.6	0.07	0.0129	0.1803	CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-,TMEM65->chr8:125324231-125384933:-,transmembrane_protein_65	CORL279_LUNG	0.07	0.6	0.1932	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	WIPF2--RAPGEFL1	2	6	WIPF2	1189	chr17:38375744:+	RAPGEFL1	22321	chr17:38337551:+	ONLY_REF_SPLICE	YES	12	25	0.4	0.24	0.0258	0.0773	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	CORL279_LUNG	0.24	0.4	0.1031	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	WIPF2--RAPGEFL1	1	6	WIPF2	1617	chr17:38376172:+	RAPGEFL1	22638	chr17:38337868:+	ONLY_REF_SPLICE	YES	19	48	0.27	0.13	0.0129	0.0773	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	CORL279_LUNG	0.13	0.27	0.0902	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	WIPF2--RAPGEFL1	1	6	WIPF2	1189	chr17:38375744:+	RAPGEFL1	21141	chr17:38334514:+	ONLY_REF_SPLICE	YES	12	18	0.37	0.28	0.0129	0.0773	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	CORL279_LUNG	0.28	0.37	0.0902	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	CDKAL1--DCDC2	2	0	CDKAL1	10857	chr6:20955816:+	DCDC2	31336	chr6:24178860:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,DCDC2->chr6:24171984-24358280:-,doublecortin_domain_containing_2	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	CERKL--GNAS	2	0	CERKL	1236	chr2:182545157:-	GNAS	37070	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CERKL->ceramide_kinase_like,chr2:182401403-182545392:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	CRNDE--FTO	2	0	CRNDE	1420	chr16:54962682:-	FTO	24199	chr16:53967897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CRNDE->chr16:54952775-54963101:-,colorectal_neoplasia_differentially_expressed_(non-protein_coding),FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	EXO1--RINT1	2	0	EXO1	10366	chr1:242024006:+	RINT1	31682	chr7:105189001:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	EXO1->chr1:242011269-242058450:+,exonuclease_1,RINT1->RAD50_interactor_1,chr7:105172532-105208124:+	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	MGAT4C--IQCB1	2	0	MGAT4C	8846	chr12:86650017:-	IQCB1	38366	chr3:121500721:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MGAT4C->MGAT4_family_member_C,chr12:86372516-87232681:-,IQCB1->IQ_motif_containing_B1,chr3:121488610-121553926:-	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	MRPL2--GTF2I	2	0	MRPL2	4785	chr6:43023635:-	GTF2I	47564	chr7:74173110:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MRPL2->chr6:43021767-43027544:-,mitochondrial_ribosomal_protein_L2,GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	MTHFD1--EIF3C	2	0	MTHFD1	1438	chr14:64855186:+	EIF3C	43580	chr16:28734485:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MTHFD1->chr14:64854749-64926722:+,methylenetetrahydrofolate_dehydrogenase,_cyclohydrolase_and_formyltetrahydrofolate_synthetase_1,EIF3C->Oncogene{Bushman},chr16:28699879-28747051:+,eukaryotic_translation_initiation_factor_3_subunit_C	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	RGS12--PGM3	2	0	RGS12	8553	chr4:3344780:+	PGM3	41069	chr6:83896794:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	RGS12->chr4:3294755-3441640:+,regulator_of_G-protein_signaling_12,PGM3->chr6:83870869-83903655:-,phosphoglucomutase_3	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	RP11-1094M14.11--MTCH2	2	0	RP11-1094M14.11	1382	chr17:33895520:+	MTCH2	8897	chr11:47657123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	RP11-1094M14.11->chr17:33895139-33901811:+,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	RP5-864K19.4--SMC4	2	0	RP5-864K19.4	1240	chr1:39325911:+	SMC4	17694	chr3:160132155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	RP5-864K19.4->chr1:39325672-39385068:+,SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	ST18--PCMTD1	2	0	ST18	11031	chr8:53166810:-	PCMTD1	53249	chr8:52773806:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ST18->chr8:53023399-53373519:-,suppression_of_tumorigenicity_18,_zinc_finger,PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	STX18-AS1--MAPKAPK5	2	0	STX18-AS1	2665	chr4:4546634:+	MAPKAPK5	31400	chr12:112326292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	TOX--CA8	2	0	TOX	1323	chr8:60031445:-	CA8	26715	chr8:61102544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	TOX->chr8:59717977-60031767:-,thymocyte_selection_associated_high_mobility_group_box,CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	WIPF2--RAPGEFL1	2	0	WIPF2	1189	chr17:38375744:+	RAPGEFL1	25510	chr17:38345118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	CORL279_LUNG	1	1	0.0258	TRUE	1	1	0	8	1	TRUE	ACH-000257
CORL279_LUNG	VWDE--PHF14	1	2	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	33	74	0.08	0.04	0.0129	0.0258	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CORL279_LUNG	0.04	0.08	0.0387	TRUE	0	6	0	17	2	TRUE	ACH-000257
HMEL_BREAST	ALDOA--KRT17	10	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1203	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	HMEL_BREAST	1	1	0.1203	TRUE	0	0	0	10	0	TRUE	ACH-000642
HMEL_BREAST	DUSP6--KRT14	7	0	DUSP6	2249	chr12:89745800:-	KRT14	10041	chr17:39743147:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	DUSP6->chr12:89741009-89747048:-,dual_specificity_phosphatase_6,KRT14->chr17:39738531-39743173:-,keratin_14	HMEL_BREAST	1	1	0.0842	TRUE	0	0	0	1	0	TRUE	ACH-000642
HMEL_BREAST	ALDOA--KRT17	6	0	ALDOA	7476	chr16:30077248:+	KRT17	15303	chr17:39780798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	HMEL_BREAST	1	1	0.0722	TRUE	0	0	0	10	0	TRUE	ACH-000642
HMEL_BREAST	PABPC1--KRT14	4	0	PABPC1	2002	chr8:101734036:-	KRT14	18384	chr17:39743147:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	GTEx&tcga_normals:1/3694=0.03%,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,KRT14->chr17:39738531-39743173:-,keratin_14	HMEL_BREAST	1	1	0.0481	TRUE	0	0	0	4	0	TRUE	ACH-000642
HMEL_BREAST	IGFBP7--KRT17	3	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	HMEL_BREAST	1	1	0.0361	TRUE	0	0	0	9	0	TRUE	ACH-000642
HMEL_BREAST	PABPC1--KRT14	3	0	PABPC1	2018	chr8:101734020:-	KRT14	18429	chr17:39743102:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	GTEx&tcga_normals:1/3694=0.03%,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,KRT14->chr17:39738531-39743173:-,keratin_14	HMEL_BREAST	1	1	0.0361	TRUE	0	0	0	4	0	TRUE	ACH-000642
HMEL_BREAST	RP11-440L14.1--CCNG2	2	0	RP11-440L14.1	1078	chr4:775560:-	CCNG2	9958	chr4:78079686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	RP11-440L14.1->chr4:756175-775637:-,CCNG2->chr4:78078304-78354542:+,cyclin_G2	HMEL_BREAST	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000642
HMEL_BREAST	RPS25--PLXNB1	2	0	RPS25	1410	chr11:118888992:-	PLXNB1	20580	chr3:48454578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,PLXNB1->Oncogene{Bushman},chr3:48445261-48471594:-,plexin_B1	HMEL_BREAST	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000642
HMEL_BREAST	SCAF4--PGBD2	2	0	SCAF4	16796	chr21:33057362:-	PGBD2	26865	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	HMEL_BREAST	1	1	0.0241	TRUE	1	0	0	1	0	TRUE	ACH-000642
SNU478_BILIARY_TRACT	LOH12CR1--BCL2L14	771	255	LOH12CR1	2575	chr12:12514283:+	BCL2L14	20042	chr12:12240147:+	ONLY_REF_SPLICE	YES	275	176	0.79	0.85	9.0826	3.004	LOH12CR1->chr12:12510013-12619840:+,BCL2L14->BCL2_like_14,chr12:12202778-12364018:+	SNU478_BILIARY_TRACT	0.79	0.85	12.0866	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	LRP6--ETV6	274	82	LRP6	1332	chr12:12419615:-	ETV6	40841	chr12:11992074:+	ONLY_REF_SPLICE	YES	1006	11	0.26	0.97	3.2278	0.966	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	SNU478_BILIARY_TRACT	0.26	0.97	4.1938	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	LRP6--CREBL2	243	59	LRP6	1332	chr12:12419615:-	CREBL2	37502	chr12:12788711:+	ONLY_REF_SPLICE	YES	1006	555	0.23	0.35	2.8626	0.695	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+	SNU478_BILIARY_TRACT	0.23	0.35	3.5576	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	TOP3B--CYYR1	70	35	TOP3B	5404	chr22:22326984:-	CYYR1	25340	chr21:27852748:-	ONLY_REF_SPLICE	YES	86	0	0.55	1	0.8246	0.4123	TOP3B->chr22:22311397-22337213:-,topoisomerase_(DNA)_III_beta,CYYR1->chr21:27838528-27945603:-,cysteine_and_tyrosine_rich_1	SNU478_BILIARY_TRACT	0.55	1	1.2369	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	MAP2K3--PEMT	73	15	MAP2K3	1298	chr17:21188281:+	PEMT	22174	chr17:17480341:-	ONLY_REF_SPLICE	YES	43	54	0.67	0.62	0.86	0.1767	MAP2K3->chr17:21187984-21218552:+,mitogen-activated_protein_kinase_kinase_3,PEMT->chr17:17408877-17495022:-,phosphatidylethanolamine_N-methyltransferase	SNU478_BILIARY_TRACT	0.62	0.67	1.0367	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	LOH12CR1--BCL2L14	18	60	LOH12CR1	2575	chr12:12514283:+	BCL2L14	21216	chr12:12243713:+	ONLY_REF_SPLICE	YES	275	371	0.22	0.17	0.212	0.7068	LOH12CR1->chr12:12510013-12619840:+,BCL2L14->BCL2_like_14,chr12:12202778-12364018:+	SNU478_BILIARY_TRACT	0.17	0.22	0.9188	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	CIRBP--STK11	29	2	CIRBP	10200	chr19:1272050:+	STK11	20877	chr19:1218416:+	ONLY_REF_SPLICE	YES	129	0	0.19	1	0.3416	0.0236	LOCAL_REARRANGEMENT:+:[30956],CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	SNU478_BILIARY_TRACT	0.19	1	0.3652	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	LRP6--ETV6	7	83	LRP6	1332	chr12:12419615:-	ETV6	39686	chr12:11979336:+	ONLY_REF_SPLICE	YES	1006	12	0.08	0.88	0.0825	0.9778	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	SNU478_BILIARY_TRACT	0.08	0.88	1.0603	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	LRP6--ETV6	1	83	LRP6	1332	chr12:12419615:-	ETV6	38928	chr12:11978578:+	ONLY_REF_SPLICE	NO	1006	12	0.08	0.88	0.0118	0.9778	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	SNU478_BILIARY_TRACT	0.08	0.88	0.9896	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	LOH12CR1--BCL2L14	1	57	LOH12CR1	1431	chr12:12510443:+	BCL2L14	20042	chr12:12240147:+	ONLY_REF_SPLICE	YES	452	176	0.11	0.25	0.0118	0.6715	LOH12CR1->chr12:12510013-12619840:+,BCL2L14->BCL2_like_14,chr12:12202778-12364018:+	SNU478_BILIARY_TRACT	0.11	0.25	0.6833	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	USMG5--RP11-886D15.1	13	4	USMG5	1058	chr10:105156166:-	RP11-886D15.1	9405	chr11:104443325:-	ONLY_REF_SPLICE	YES	4	0	0.81	1	0.1531	0.0471	USMG5->chr10:105148798-105156223:-,up-regulated_during_skeletal_muscle_growth_5_homolog_(mouse),RP11-886D15.1->chr11:104316596-104480049:-	SNU478_BILIARY_TRACT	0.81	1	0.2002	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	USMG5--RP11-886D15.1	8	1	USMG5	1058	chr10:105156166:-	RP11-886D15.1	10446	chr11:104439859:-	ONLY_REF_SPLICE	YES	4	2	0.69	0.82	0.0942	0.0118	USMG5->chr10:105148798-105156223:-,up-regulated_during_skeletal_muscle_growth_5_homolog_(mouse),RP11-886D15.1->chr11:104316596-104480049:-	SNU478_BILIARY_TRACT	0.69	0.82	0.106	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	CCAT1--RP11-382A18.2	8	0	CCAT1	1279	chr8:128231055:-	RP11-382A18.2	7138	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0942	0	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	SNU478_BILIARY_TRACT	1	1	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	RP11-125O5.2--GOLT1B	8	0	RP11-125O5.2	9735	chr12:21294592:+	GOLT1B	15024	chr12:21659819:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0942	0	RP11-125O5.2->chr12:21200113-21329829:+,GOLT1B->chr12:21654715-21671342:+,golgi_transport_1B	SNU478_BILIARY_TRACT	1	1	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	TOP3B--CYYR1	1	17	TOP3B	4297	chr22:22328729:-	CYYR1	25340	chr21:27852748:-	ONLY_REF_SPLICE	YES	109	0	0.14	1	0.0118	0.2003	TOP3B->chr22:22311397-22337213:-,topoisomerase_(DNA)_III_beta,CYYR1->chr21:27838528-27945603:-,cysteine_and_tyrosine_rich_1	SNU478_BILIARY_TRACT	0.14	1	0.2121	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	CIRBP--STK11	4	2	CIRBP	10200	chr19:1272050:+	STK11	19746	chr19:1216267:+	ONLY_REF_SPLICE	YES	129	0	0.04	1	0.0471	0.0236	LOCAL_REARRANGEMENT:+:[30956],CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	SNU478_BILIARY_TRACT	0.04	1	0.0707	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	LGALS3BP--ACTB	4	0	LGALS3BP	4091	chr17:76972129:-	ACTB	17100	chr7:5568161:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU478_BILIARY_TRACT	1	1	0.0471	TRUE	0	0	0	2	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	ALDOA--KRT17	3	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	SNU478_BILIARY_TRACT	1	1	0.0353	TRUE	0	0	0	10	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	PSAP--KRT17	3	0	PSAP	5266	chr10:73588686:-	KRT17	16748	chr17:39780813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,KRT17->chr17:39775689-39781094:-,keratin_17	SNU478_BILIARY_TRACT	1	1	0.0353	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	AC006538.4--TNFAIP2	2	0	AC006538.4	2436	chr19:2737046:-	TNFAIP2	8609	chr14:103592647:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AC006538.4->chr19:2717767-2740046:-,TNFAIP2->TNF_alpha_induced_protein_2,chr14:103589779-103603776:+	SNU478_BILIARY_TRACT	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	MAML2--CEP57	2	0	MAML2	2798	chr11:96074547:-	CEP57	19069	chr11:95532396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_v2:{count=3;pct=0.03%;dist=Ovary=1,Thyroid=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Urinary_Bladder=1},MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,CEP57->centrosomal_protein_57,chr11:95523129-95565857:+	SNU478_BILIARY_TRACT	1	1	0.0236	TRUE	0	1	0	3	1	TRUE	ACH-000377
SNU478_BILIARY_TRACT	POLE--ANKLE2	2	0	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	SNU478_BILIARY_TRACT	1	1	0.0236	TRUE	0	0	0	11	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	RCC1--SNX5	2	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	SNU478_BILIARY_TRACT	1	1	0.0236	TRUE	0	5	0	11	0	TRUE	ACH-000377
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIEZO1--GALNS	123	59	PIEZO1	11754	chr16:88798743:-	GALNS	42337	chr16:88898509:-	ONLY_REF_SPLICE	YES	123	37	0.6	0.83	1.1854	0.5686	LOCAL_REARRANGEMENT:-:[28523],PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.83	1.754	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFIX--ZNF93	113	56	NFIX	11381	chr19:13192669:+	ZNF93	26198	chr19:20026089:+	ONLY_REF_SPLICE	YES	37	30	0.82	0.85	1.089	0.5397	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,ZNF93->chr19:20011722-20046384:+,zinc_finger_protein_93	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.85	1.6287	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4A--ZNF254	77	34	PDE4A	4765	chr19:10541762:+	ZNF254	34117	chr19:24309056:+	ONLY_REF_SPLICE	YES	27	43	0.8	0.72	0.7421	0.3277	PDE4A->Oncogene{Bushman},chr19:10527449-10580305:+,phosphodiesterase_4A,ZNF254->chr19:24216276-24312654:+,zinc_finger_protein_254	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.8	1.0698	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP6V0D1--AGRP	45	61	ATP6V0D1	1281	chr16:67514860:-	AGRP	20376	chr16:67517542:-	INCL_NON_REF_SPLICE	YES	127	1	0.45	0.99	0.4337	0.5879	LOCAL_REARRANGEMENT:-:[1334],ATP6V0D1->ATPase_H+_transporting_V0_subunit_d1,chr16:67471917-67515140:-,AGRP->agouti_related_neuropeptide,chr16:67516474-67517716:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.99	1.0216	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCC1--ZZEF1	53	17	SMARCC1	2624	chr3:47814307:-	ZZEF1	54588	chr17:3989949:-	ONLY_REF_SPLICE	YES	100	12	0.41	0.85	0.5108	0.1638	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.85	0.6746	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFIX--ZNF93	35	77	NFIX	11381	chr19:13192669:+	ZNF93	25652	chr19:20025543:+	ONLY_REF_SPLICE	YES	37	28	0.75	0.8	0.3373	0.7421	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,ZNF93->chr19:20011722-20046384:+,zinc_finger_protein_93	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.8	1.0794	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCMH1--TIE1	35	11	SCMH1	1096	chr1:41707731:-	TIE1	26582	chr1:43766644:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.3373	0.106	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),TIE1->Oncogene{Bushman},chr1:43766664-43788779:+,tyrosine_kinase_with_immunoglobulin_like_and_EGF_like_domains_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.4433	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPA2--EYA3	32	13	RPA2	1684	chr1:28240574:-	EYA3	18593	chr1:28343750:-	ONLY_REF_SPLICE	YES	172	51	0.21	0.47	0.3084	0.1253	LOCAL_REARRANGEMENT:-:[55598],RPA2->Oncogene{Bushman},chr1:28218035-28241257:-,replication_protein_A2,EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.47	0.4337	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTCF--TSNAXIP1	33	3	CTCF	1318	chr16:67596627:+	TSNAXIP1	19625	chr16:67848205:+	ONLY_REF_SPLICE	YES	5	4	0.88	0.9	0.318	0.0289	GTEx&tcga_normals:4/3694=0.11%,CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,TSNAXIP1->chr16:67840668-67866051:+,translin_associated_factor_X_interacting_protein_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.9	0.3469	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCMH1--TIE1	28	11	SCMH1	1096	chr1:41707731:-	TIE1	28803	chr1:43770522:+	ONLY_REF_SPLICE	YES	2	401	0.95	0.09	0.2699	0.106	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),TIE1->Oncogene{Bushman},chr1:43766664-43788779:+,tyrosine_kinase_with_immunoglobulin_like_and_EGF_like_domains_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.95	0.3759	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP6V0D1--AGRP	22	32	ATP6V0D1	1281	chr16:67514860:-	AGRP	20614	chr16:67517304:-	ONLY_REF_SPLICE	YES	127	5	0.3	0.92	0.212	0.3084	LOCAL_REARRANGEMENT:-:[1334],ATP6V0D1->ATPase_H+_transporting_V0_subunit_d1,chr16:67471917-67515140:-,AGRP->agouti_related_neuropeptide,chr16:67516474-67517716:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.92	0.5204	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPM4--KCNV1	16	9	TPM4	3954	chr19:16187507:+	KCNV1	21395	chr8:110987421:-	ONLY_REF_SPLICE	YES	591	24	0.04	0.51	0.1542	0.0867	TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,KCNV1->chr8:110975874-110988076:-,potassium_voltage-gated_channel_modifier_subfamily_V_member_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.51	0.2409	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4A--ZNF254	14	15	PDE4A	3523	chr19:10531760:+	ZNF254	34117	chr19:24309056:+	ONLY_REF_SPLICE	YES	8	43	0.78	0.4	0.1349	0.1446	PDE4A->Oncogene{Bushman},chr19:10527449-10580305:+,phosphodiesterase_4A,ZNF254->chr19:24216276-24312654:+,zinc_finger_protein_254	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.78	0.2795	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDAC1--TMBIM6	17	1	HDAC1	1133	chr1:32757819:+	TMBIM6	16081	chr12:50109164:+	ONLY_REF_SPLICE	YES	32	0	0.36	1	0.1638	0.0096	HDAC1->chr1:32757687-32799236:+,histone_deacetylase_1,TMBIM6->chr12:50101508-50158717:+,transmembrane_BAX_inhibitor_motif_containing_6	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.1734	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACAP2--PPP1R2	15	8	ACAP2	1284	chr3:195163524:-	PPP1R2	41684	chr3:195256702:-	ONLY_REF_SPLICE	YES	68	156	0.25	0.13	0.1446	0.0771	LOCAL_REARRANGEMENT:-:[77414],ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,PPP1R2->chr3:195241221-195270209:-,protein_phosphatase_1_regulatory_inhibitor_subunit_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.25	0.2217	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP6V0D1--AGRP	12	15	ATP6V0D1	1281	chr16:67514860:-	AGRP	20905	chr16:67517013:-	ONLY_REF_SPLICE	YES	127	7	0.18	0.79	0.1157	0.1446	LOCAL_REARRANGEMENT:-:[1334],ATP6V0D1->ATPase_H+_transporting_V0_subunit_d1,chr16:67471917-67515140:-,AGRP->agouti_related_neuropeptide,chr16:67516474-67517716:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.79	0.2603	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCMH1--TIE1	15	1	SCMH1	1096	chr1:41707731:-	TIE1	29185	chr1:43770904:+	ONLY_REF_SPLICE	YES	2	319	0.89	0.05	0.1446	0.0096	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),TIE1->Oncogene{Bushman},chr1:43766664-43788779:+,tyrosine_kinase_with_immunoglobulin_like_and_EGF_like_domains_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.89	0.1542	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF253--UNC13A	14	1	ZNF253	1114	chr19:19976808:+	UNC13A	41447	chr19:17735761:-	ONLY_REF_SPLICE	YES	3	7	0.83	0.68	0.1349	0.0096	ZNF253->chr19:19976695-20005483:+,zinc_finger_protein_253,UNC13A->chr19:17712137-17799401:-,unc-13_homolog_A_(C._elegans)	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.83	0.1445	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF3--SLC44A2	10	12	ILF3	1227	chr19:10765163:+	SLC44A2	27610	chr19:10738398:+	ONLY_REF_SPLICE	YES	529	89	0.04	0.2	0.0964	0.1157	LOCAL_REARRANGEMENT:+:[9702],ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.2	0.2121	TRUE	0	1	0	1	1	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4A--ZNF254	4	36	PDE4A	5902	chr19:10543247:+	ZNF254	34117	chr19:24309056:+	ONLY_REF_SPLICE	YES	34	43	0.54	0.48	0.0386	0.347	PDE4A->Oncogene{Bushman},chr19:10527449-10580305:+,phosphodiesterase_4A,ZNF254->chr19:24216276-24312654:+,zinc_finger_protein_254	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.54	0.3856	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SETD4--PKNOX1	10	1	SETD4	5189	chr21:37429407:-	PKNOX1	22071	chr21:44424436:+	ONLY_REF_SPLICE	YES	42	5	0.21	0.69	0.0964	0.0096	SETD4->SET_domain_containing_4,chr21:37406839-37451687:-,PKNOX1->Oncogene{Bushman},PBX/knotted_1_homeobox_1,chr21:44394620-44453691:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.69	0.106	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAF1--RP11-522M21.3	8	4	FAF1	2661	chr1:51323601:-	RP11-522M21.3	31486	chr1:245837207:-	ONLY_REF_SPLICE	YES	86	5	0.12	0.71	0.0771	0.0386	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,RP11-522M21.3->chr1:245837034-245839780:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.71	0.1157	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMPR2--CFLAR-AS1	7	7	BMPR2	1615	chr2:203242273:+	CFLAR-AS1	31815	chr2:202015982:-	ONLY_REF_SPLICE	YES	9	0	0.61	1	0.0675	0.0675	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,CFLAR-AS1->CFLAR_antisense_RNA_1,chr2:202005007-202022546:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	0.135	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF253--UNC13A	7	7	ZNF253	3425	chr19:19990955:+	UNC13A	41447	chr19:17735761:-	ONLY_REF_SPLICE	YES	5	7	0.74	0.67	0.0675	0.0675	ZNF253->chr19:19976695-20005483:+,zinc_finger_protein_253,UNC13A->chr19:17712137-17799401:-,unc-13_homolog_A_(C._elegans)	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.74	0.135	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TROAP--TUBA1C	8	2	TROAP	5059	chr12:49721113:+	TUBA1C	14925	chr12:49621874:+	ONLY_REF_SPLICE	YES	109	0	0.08	1	0.0771	0.0193	LOCAL_REARRANGEMENT:+:[49905],TROAP->chr12:49717019-49725514:+,trophinin_associated_protein,TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0964	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPNE7--SPIRE2	7	0	CPNE7	2487	chr16:89644129:+	SPIRE2	30358	chr16:89922008:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0675	0	CPNE7->chr16:89642176-89663654:+,copine_7,SPIRE2->chr16:89884587-89937727:+,spire_type_actin_nucleation_factor_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0675	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--EGFL7	7	0	MIR142	1039	chr17:56409831:-	EGFL7	13933	chr9:139565402:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	MIR142->chr17:56408245-56409869:-,microRNA_142,EGFL7->EGF_like_domain_multiple_7,chr9:139553308-139567130:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0675	TRUE	0	0	0	2	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZZEF1--SMARCC1	6	1	ZZEF1	40159	chr17:3953002:-	SMARCC1	66011	chr3:47814426:-	ONLY_REF_SPLICE	YES	32	117	0.18	0.06	0.0578	0.0096	ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1,SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.18	0.0674	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPM4--KCNV1	6	0	TPM4	3429	chr19:16186982:+	KCNV1	21395	chr8:110987421:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0578	0	TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,KCNV1->chr8:110975874-110988076:-,potassium_voltage-gated_channel_modifier_subfamily_V_member_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAF1--AGBL4	5	3	FAF1	3708	chr1:51267303:-	AGBL4	36084	chr1:49511472:-	ONLY_REF_SPLICE	YES	132	0	0.06	1	0.0482	0.0289	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0771	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM171B--ITGAV	5	0	FAM171B	7215	chr2:187618776:+	ITGAV	29035	chr2:187511413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0482	0	LOCAL_REARRANGEMENT:+:[13070],FAM171B->chr2:187558698-187630685:+,family_with_sequence_similarity_171_member_B,ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0482	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFIX--ZNF93	1	16	NFIX	11381	chr19:13192669:+	ZNF93	27325	chr19:20027369:+	ONLY_REF_SPLICE	YES	37	48	0.31	0.26	0.0096	0.1542	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,ZNF93->chr19:20011722-20046384:+,zinc_finger_protein_93	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.31	0.1638	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPR--SFPQ	5	0	TPR	24437	chr1:186311278:-	SFPQ	58667	chr1:35648991:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0482	0	TPR->Oncogene{Bushman},chr1:186280784-186344825:-,translocated_promoter_region,_nuclear_basket_protein,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0482	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf63--GNB1	4	0	C1orf63	8720	chr1:25594231:-	GNB1	21965	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMSS1--COL8A1	4	0	CMSS1	1210	chr3:99536887:+	COL8A1	34550	chr3:99463741:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	GTEx&tcga_normals:2/3694=0.05%,LOCAL_REARRANGEMENT:+:[18608],CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast),COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	1	0	1	1	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDX1--GPBP1L1	4	0	PRDX1	3556	chr1:45984610:-	GPBP1L1	24606	chr1:46099908:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	PRDX1->Oncogene{Bushman},chr1:45976708-45988719:-,peroxiredoxin_1,GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPZB--UBR4	3	0	CAPZB	1137	chr1:19811930:-	UBR4	27427	chr1:19514034:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INPP5B--SF3A3	3	0	INPP5B	5849	chr1:38406360:-	SF3A3	48547	chr1:38425847:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:-:[9918],INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B,SF3A3->chr1:38422647-38456593:-,splicing_factor_3a_subunit_3	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-321K16.1--SLC25A48	2	3	CTC-321K16.1	4781	chr5:134965066:+	SLC25A48	10390	chr5:135178105:+	ONLY_REF_SPLICE	NO	1	0	0.83	1	0.0193	0.0289	CTC-321K16.1->chr5:134895267-134970564:+,SLC25A48->chr5:135170338-135224326:+,solute_carrier_family_25_member_48	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0482	TRUE	0	3	0	3	3	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AAK1--KIAA0100	2	0	AAK1	19555	chr2:69732701:-	KIAA0100	62916	chr17:26942264:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,KIAA0100->KIAA0100,chr17:26941458-26972472:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC009403.2--ACADM	2	0	AC009403.2	2738	chr7:155436162:-	ACADM	26040	chr1:76253182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	AC009403.2->chr7:155403925-155437899:-,ACADM->Oncogene{Bushman},acyl-CoA_dehydrogenase,_C-4_to_C-12_straight_chain,chr1:76190036-76253260:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP6--EIF3A	2	0	ARHGAP6	15294	chrX:11196220:-	EIF3A	44471	chr10:120810186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-,EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMP2K--ANXA3	2	0	BMP2K	1380	chr4:79697875:+	ANXA3	32992	chr4:79494334:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,ANXA3->annexin_A3,chr4:79472673-79531597:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	1	0	1	1	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	2	0	CCDC26	4666	chr8:130411760:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	4	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD38--BST1	2	0	CD38	1373	chr4:15780270:+	BST1	26910	chr4:15733363:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[39962],CD38->CD38_molecule,chr4:15779898-15854853:+,BST1->bone_marrow_stromal_cell_antigen_1,chr4:15704573-15739936:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4G2--EPB41L4A-AS1	2	0	EIF4G2	1406	chr11:10830252:-	EPB41L4A-AS1	17239	chr5:111497400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2,EPB41L4A-AS1->EPB41L4A_antisense_RNA_1,chr5:111496223-111499973:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENTPD4--TAF1	2	0	ENTPD4	7688	chr8:23299106:-	TAF1	25481	chrX:70587349:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4,TAF1->ArcherDX_panel,FoundationOne_panel,TATA-box_binding_protein_associated_factor_1,chrX:70586114-70752224:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GARNL3--FAHD2A	2	0	GARNL3	3310	chr9:130005528:+	FAHD2A	46715	chr2:96071301:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+,FAHD2A->chr2:96068469-96082364:+,fumarylacetoacetate_hydrolase_domain_containing_2A	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLUD1P3--SCG5	2	0	GLUD1P3	1312	chr10:75490631:+	SCG5	8434	chr15:32935787:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GLUD1P3->chr10:75490320-75497069:+,glutamate_dehydrogenase_1_pseudogene_3,SCG5->chr15:32933877-32989299:+,secretogranin_V	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDAC4--NDUFA10	2	0	HDAC4	7196	chr2:240158289:-	NDUFA10	51999	chr2:240960829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=6;pct=0.07%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1,Muscle_-_Skeletal=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Cells_-_Transformed_fibroblasts=1},HDAC4->Oncogene{Bushman},chr2:239969864-240323348:-,histone_deacetylase_4,NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPC--PARD3	2	0	HNRNPC	1197	chr14:21737457:-	PARD3	49159	chr10:34420511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2),PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBAP1--NIT2	2	0	HSPBAP1	1208	chr3:122512464:-	NIT2	25565	chr3:100071248:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	HSPBAP1->HSPB1_associated_protein_1,Oncogene{Bushman},chr3:122458846-122512671:-,NIT2->chr3:100053545-100075710:+,nitrilase_family_member_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL23R--BMI1	2	0	IL23R	7612	chr1:67673381:+	BMI1	20290	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	IL23R->chr1:67632083-67725662:+,interleukin_23_receptor,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARK4--CLPTM1	2	0	MARK4	2472	chr19:45754897:+	CLPTM1	26919	chr19:45465220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	LOCAL_REARRANGEMENT:+:[85947],MARK4->Oncogene{Bushman},chr19:45582546-45808541:+,microtubule_affinity_regulating_kinase_4,CLPTM1->chr19:45457842-45496599:+,cleft_lip_and_palate_associated_transmembrane_protein_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAT2A--RBM39	2	0	MAT2A	4788	chr2:85770157:+	RBM39	18076	chr20:34320057:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	MAT2A->chr2:85766288-85772403:+,methionine_adenosyltransferase_2A,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MOSPD2--CD99P1	2	0	MOSPD2	1318	chrX:14891880:+	CD99P1	33615	chrX:2556015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	MOSPD2->chrX:14891563-14940449:+,motile_sperm_domain_containing_2,CD99P1->CD99_molecule_pseudogene_1,chrX:2527389-2575270:+,chrY:2477389-2525270:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOL9--IPO5	2	0	NOL9	2649	chr1:6610456:-	IPO5	39381	chr13:98654721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	NOL9->chr1:6581407-6614595:-,nucleolar_protein_9,IPO5->chr13:98605912-98676551:+,importin_5	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDS5B--KPNA3	2	0	PDS5B	1167	chr13:33160730:+	KPNA3	49668	chr13:50321129:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,KPNA3->chr13:50273447-50367057:-,karyopherin_subunit_alpha_3	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2E--CNN2	2	0	POLR2E	1341	chr19:1095258:-	CNN2	17165	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	LOCAL_INVERSION:-:+:[47526],POLR2E->chr19:1086594-1095598:-,polymerase_(RNA)_II_subunit_E,CNN2->calponin_2,chr19:1026298-1039068:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2B--PPAPDC3	2	0	PRRC2B	9243	chr9:134323191:+	PPAPDC3	44222	chr9:134183310:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	LOCAL_REARRANGEMENT:+:[84831],PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,PPAPDC3->chr9:134165081-134184649:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	2	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMD14--MBD5	2	0	PSMD14	2882	chr2:162173080:+	MBD5	24694	chr2:148798775:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14,MBD5->chr2:148778580-149275805:+,methyl-CpG_binding_domain_protein_5	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABEP2--EIF4A2	2	0	RABEP2	1263	chr16:28947585:-	EIF4A2	22906	chr3:186504916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2,EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-158I13.2--TTC13	2	0	RP11-158I13.2	1097	chr2:27806009:+	TTC13	21633	chr1:231097049:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RP11-158I13.2->chr2:27805913-27858041:+,TTC13->chr1:231041989-231114621:-,tetratricopeptide_repeat_domain_13	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-245P10.4--UBAP2	2	0	RP11-245P10.4	1098	chr1:228595179:+	UBAP2	30989	chr9:33933626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RP11-245P10.4->chr1:228595082-228597395:+,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-435B5.4--EPB41L4A-AS1	2	0	RP11-435B5.4	2843	chr1:143465380:-	EPB41L4A-AS1	20775	chr5:111497400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RP11-435B5.4->chr1:143354963-143467632:-,EPB41L4A-AS1->EPB41L4A_antisense_RNA_1,chr5:111496223-111499973:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP6--SLC22A23	2	0	SENP6	2068	chr6:76312292:+	SLC22A23	48612	chr6:3298452:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3BGRL3--CEP85	2	0	SH3BGRL3	2028	chr1:26606694:+	CEP85	20441	chr1:26603026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	LOCAL_REARRANGEMENT:+:[368],SH3BGRL3->SH3_domain_binding_glutamate_rich_protein_like_3,chr1:26605667-26608007:+,CEP85->centrosomal_protein_85,chr1:26560691-26605299:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLIRP--SPATS2	2	0	SLIRP	4730	chr14:78182222:+	SPATS2	33216	chr12:49906645:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SLIRP->SRA_stem-loop_interacting_RNA_binding_protein,chr14:78174414-78227447:+,SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG8--RNF219	2	0	SNHG8	1429	chr4:119200292:+	RNF219	10813	chr13:79191257:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,RNF219->chr13:79188426-79233314:-,ring_finger_protein_219	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPTA1--RASSF1	2	0	SPTA1	37666	chr1:158604333:-	RASSF1	56288	chr3:50375442:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SPTA1->ArcherDX_panel,FoundationOne_panel,chr1:158580496-158656488:-,spectrin_alpha,_erythrocytic_1,RASSF1->Oncogene{Bushman},Ras_association_domain_family_member_1,chr3:50367219-50378411:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SREBF1--HNRNPA2B1	2	0	SREBF1	1285	chr17:17740041:-	HNRNPA2B1	20650	chr7:26237352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx&tcga_normals:1/3694=0.03%,SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM242--FBXO5	2	0	TMEM242	3035	chr6:157739814:-	FBXO5	12974	chr6:153296756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	TMEM242->chr6:157710418-157744633:-,transmembrane_protein_242,FBXO5->F-box_protein_5,Oncogene{Bushman},chr6:153291664-153304714:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC12--OSBPL9	2	0	TXNDC12	3233	chr1:52507209:-	OSBPL9	42341	chr1:52246836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},TXNDC12->chr1:52485803-52521843:-,thioredoxin_domain_containing_12,OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	1	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UCP2--PHF20L1	2	0	UCP2	2744	chr11:73692521:-	PHF20L1	38682	chr8:133848785:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	UCP2->chr11:73685712-73694352:-,uncoupling_protein_2,PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UROS--GDI2	2	0	UROS	1220	chr10:127511598:-	GDI2	23323	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	UROS->chr10:127477146-127511817:-,uroporphyrinogen_III_synthase,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRN2--U2AF1	2	0	XRN2	8014	chr20:21314256:+	U2AF1	39595	chr21:44514898:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFP36--TMPO	2	0	ZFP36	1116	chr19:39897568:+	TMPO	15047	chr12:98931253:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ZFP36->Oncogene{Bushman},ZFP36_ring_finger_protein,chr19:39897453-39900052:+,TMPO->chr12:98909290-98944157:+,thymopoietin	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF253--UNC13A	2	0	ZNF253	1114	chr19:19976808:+	UNC13A	45732	chr19:17729771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ZNF253->chr19:19976695-20005483:+,zinc_finger_protein_253,UNC13A->chr19:17712137-17799401:-,unc-13_homolog_A_(C._elegans)	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF432--AP3B1	2	0	ZNF432	1164	chr19:52598828:-	AP3B1	22385	chr5:77512061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ZNF432->chr19:52534632-52598991:-,zinc_finger_protein_432,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	1187	36841	IGKV2-40	1302	chr2:89629885:-	AC096579.7	6005	chr2:89161428:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	18.8105	583.8228	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	602.6333	TRUE	0	4	0	1	4	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	23	36806	IGKV2-40	1300	chr2:89629887:-	AC096579.7	6003	chr2:89161430:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3645	583.2682	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	583.6327	TRUE	0	4	0	1	4	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	3	15335	IGKV2-40	1246	chr2:89629941:-	AC096579.7	7087	chr2:89157145:-	INCL_NON_REF_SPLICE	YES	6	284	1	0.98	0.0475	243.0152	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	243.0627	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	4	12778	IGKV2-40	1245	chr2:89629942:-	AC096579.7	7119	chr2:89157113:-	INCL_NON_REF_SPLICE	YES	8	5258	1	0.71	0.0634	202.4942	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	202.5576	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	24	5616	IGKV2-40	1252	chr2:89629935:-	AC096579.7	7237	chr2:89156995:-	INCL_NON_REF_SPLICE	YES	0	18076	1	0.24	0.3803	88.9973	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	89.3776	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	34	218	IGKV2-40	1238	chr2:89629949:-	AC096579.7	7419	chr2:89156813:-	INCL_NON_REF_SPLICE	YES	37	5990	0.87	0.04	0.5388	3.4547	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.87	3.9935	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	4	290	IGKV2-40	1217	chr2:89629970:-	AC096579.7	7396	chr2:89156836:-	INCL_NON_REF_SPLICE	YES	51	7854	0.85	0.04	0.0634	4.5957	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.85	4.6591	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	11	226	IGKV2-40	1241	chr2:89629946:-	AC096579.7	7416	chr2:89156816:-	INCL_NON_REF_SPLICE	YES	38	6078	0.86	0.04	0.1743	3.5814	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.86	3.7557	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	4	245	IGKV2-40	1249	chr2:89629938:-	AC096579.7	7419	chr2:89156813:-	INCL_NON_REF_SPLICE	YES	0	5990	1	0.04	0.0634	3.8825	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	3.9459	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	3	69	IGKV2-40	1095	chr2:89630092:-	AC096579.7	7103	chr2:89157129:-	INCL_NON_REF_SPLICE	YES	144	1108	0.33	0.06	0.0475	1.0934	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.33	1.1409	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--VAT1L	4	3	WWOX	10605	chr16:78198186:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0634	0.0475	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.1109	TRUE	0	0	0	6	0	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	4	0	IGKV2-40	1043	chr2:89630144:-	AC096579.7	7322	chr2:89156910:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0634	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNN2--ZNF580	2	0	CNN2	4331	chr19:1032695:+	ZNF580	14858	chr19:56153863:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	CNN2->calponin_2,chr19:1026298-1039068:+,ZNF580->chr19:56146382-56154835:+,zinc_finger_protein_580	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-245P10.4--NVL	2	0	RP11-245P10.4	1098	chr1:228595179:+	NVL	28432	chr1:224455835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	RP11-245P10.4->chr1:228595082-228597395:+,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG16--PPP3CC	2	0	SNHG16	1092	chr17:74553939:+	PPP3CC	12857	chr8:22332467:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,PPP3CC->chr8:22298332-22398652:+,protein_phosphatase_3_catalytic_subunit_gamma	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000576
SNU213_PANCREAS	RAD51B--GPHN	5	2	RAD51B	11638	chr14:68353921:+	GPHN	73887	chr14:67648137:+	ONLY_REF_SPLICE	YES	17	18	0.29	0.28	0.0495	0.0198	RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	SNU213_PANCREAS	0.28	0.29	0.0693	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	ARHGEF28--BTF3	2	0	ARHGEF28	3185	chr5:72980709:+	BTF3	56982	chr5:72798313:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+,BTF3->basic_transcription_factor_3,chr5:72794233-72801460:+	SNU213_PANCREAS	1	1	0.0198	TRUE	0	5	0	3	4	TRUE	ACH-000266
SNU213_PANCREAS	BZW2--PABPC4	2	0	BZW2	12427	chr7:16729531:+	PABPC4	24727	chr1:40037021:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+,PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	EIF3H--MAL2	2	0	EIF3H	3765	chr8:117767905:-	MAL2	26840	chr8:120233827:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,MAL2->chr8:120177273-120257913:+,mal,_T-cell_differentiation_protein_2_(gene/pseudogene)	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	F2RL1--MYO1C	2	0	F2RL1	1332	chr5:76115089:+	MYO1C	13601	chr17:1387597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	F2RL1->F2R_like_trypsin_receptor_1,chr5:76114758-76131140:+,MYO1C->chr17:1367392-1396106:-,myosin_IC	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	HPS3--RAE1	2	0	HPS3	1357	chr3:148847727:+	RAE1	35495	chr20:55948531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	HPS3->HPS3,_biogenesis_of_lysosomal_organelles_complex_2_subunit_1,chr3:148847371-148891519:+,RAE1->chr20:55926066-55954267:+,ribonucleic_acid_export_1	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	MKKS--XRN2	2	0	MKKS	1115	chr20:10414756:-	XRN2	26481	chr20:21321359:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	MKKS->McKusick-Kaufman_syndrome,chr20:10381657-10414870:-,XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	RBM6--VPS41	2	0	RBM6	3185	chr3:50000118:+	VPS41	41366	chr7:38869928:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,VPS41->VPS41,_HOPS_complex_subunit,chr7:38762563-38971994:-	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	RCC1--GNB1	2	0	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	SNU213_PANCREAS	1	1	0.0198	TRUE	0	10	0	7	3	TRUE	ACH-000266
SNU213_PANCREAS	THOP1--RBM14	2	0	THOP1	8518	chr19:2805174:+	RBM14	27427	chr11:66393932:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	THOP1->chr19:2785458-2813599:+,thimet_oligopeptidase_1,RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	ACACA--DUSP14	1	1	ACACA	1558	chr17:35766352:-	DUSP14	82791	chr17:35870779:+	ONLY_REF_SPLICE	NO	5	12	0.29	0.14	0.0099	0.0099	LOCAL_INVERSION:-:+:[83028],ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,DUSP14->chr17:35849937-35873603:+,dual_specificity_phosphatase_14	SNU213_PANCREAS	0.14	0.29	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
KMRC2_KIDNEY	INIP--KCNU1	5	3	INIP	2331	chr9:115478741:-	KCNU1	32435	chr8:36763226:+	ONLY_REF_SPLICE	YES	33	0	0.2	1	0.0686	0.0412	INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-,KCNU1->chr8:36641842-36793646:+,potassium_calcium-activated_channel_subfamily_U_member_1	KMRC2_KIDNEY	0.2	1	0.1098	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	CTD-3116E22.6--ZNF274	4	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	KMRC2_KIDNEY	1	1	0.0549	TRUE	0	0	0	13	0	TRUE	ACH-000709
KMRC2_KIDNEY	INIP--KCNU1	3	4	INIP	4504	chr9:115456434:-	KCNU1	32428	chr8:36763219:+	INCL_NON_REF_SPLICE	YES	9	0	0.44	1	0.0412	0.0549	INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-,KCNU1->chr8:36641842-36793646:+,potassium_calcium-activated_channel_subfamily_U_member_1	KMRC2_KIDNEY	0.44	1	0.0961	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	INIP--KCNU1	2	2	INIP	1250	chr9:115480267:-	KCNU1	32435	chr8:36763226:+	ONLY_REF_SPLICE	YES	23	0	0.15	1	0.0274	0.0274	INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-,KCNU1->chr8:36641842-36793646:+,potassium_calcium-activated_channel_subfamily_U_member_1	KMRC2_KIDNEY	0.15	1	0.0548	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	ETV6--YAF2	2	0	ETV6	1307	chr12:11803094:+	YAF2	35475	chr12:42555567:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	FN1--LINC00607	2	0	FN1	27876	chr2:216256355:-	LINC00607	67042	chr2:216487484:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,LINC00607->chr2:216476286-216708445:-,long_intergenic_non-protein_coding_RNA_607	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	MYH9--TXN2	2	0	MYH9	18882	chr22:36705327:-	TXN2	48974	chr22:36863964:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[79020],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,TXN2->chr22:36863083-36878077:-,thioredoxin_2	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	1	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	MYL6B--COIL	2	0	MYL6B	4337	chr12:56549376:+	COIL	18247	chr17:55016515:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	MYL6B->chr12:56546040-56553431:+,myosin_light_chain_6B,COIL->chr17:55015548-55038415:-,coilin	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	RCC1--GNAS	2	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	3	0	13	2	TRUE	ACH-000709
KMRC2_KIDNEY	RNF19A--SKAP2	2	0	RNF19A	4601	chr8:101322095:-	SKAP2	31638	chr7:26883756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	RNF19A->chr8:101269288-101348446:-,ring_finger_protein_19A,_RBR_E3_ubiquitin_protein_ligase,SKAP2->chr7:26706681-27034858:-,src_kinase_associated_phosphoprotein_2	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	TUBA4A--FAM177A1	2	0	TUBA4A	3110	chr2:220118578:-	FAM177A1	17855	chr14:35546356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	TUBA4A->chr2:220114433-220142892:-,tubulin_alpha_4a,FAM177A1->chr14:35514113-35582336:+,family_with_sequence_similarity_177_member_A1	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000709
COLO829_SKIN	AL136376.1--RPS28	8	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0694	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	COLO829_SKIN	1	1	0.0694	TRUE	0	0	0	12	0	TRUE	ACH-000644
COLO829_SKIN	NUSAP1--OIP5	2	0	NUSAP1	1357	chr15:41625248:+	OIP5	20574	chr15:41611978:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	LOCAL_INVERSION:+:-:[73],NUSAP1->chr15:41624892-41673248:+,nucleolar_and_spindle_associated_protein_1,OIP5->Opa_interacting_protein_5,chr15:41601466-41624819:-	COLO829_SKIN	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000644
COLO829_SKIN	RPL34--ADRBK2	2	0	RPL34	1147	chr4:109541868:+	ADRBK2	30753	chr22:26117251:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	RPL34->chr4:109541722-109551568:+,ribosomal_protein_L34,ADRBK2->adrenergic,_beta,_receptor_kinase_2,chr22:25960816-26125261:+	COLO829_SKIN	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000644
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	1067	790	FAM117A	7681	chr17:47809913:-	HDAC5	31312	chr17:42162043:-	ONLY_REF_SPLICE	YES	443	386	0.81	0.83	12.4235	9.1983	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.83	21.6218	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASGRP3--VWC2	549	61	RASGRP3	4957	chr2:33701774:+	VWC2	40391	chr7:49842307:+	ONLY_REF_SPLICE	YES	6	164	0.99	0.79	6.3922	0.7102	RASGRP3->RAS_guanyl_releasing_protein_3,chr2:33661391-33789817:+,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	0.99	7.1024	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	40	820	FAM117A	7681	chr17:47809913:-	HDAC5	30832	chr17:42162523:-	ONLY_REF_SPLICE	YES	443	380	0.66	0.69	0.4657	9.5476	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	0.69	10.0133	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	3	820	FAM117A	7952	chr17:47809642:-	HDAC5	30832	chr17:42162523:-	ONLY_REF_SPLICE	YES	495	380	0.62	0.68	0.0349	9.5476	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.68	9.5825	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP3CA--PDLIM5	150	77	PPP3CA	3741	chr4:102117073:-	PDLIM5	30761	chr4:95444875:+	ONLY_REF_SPLICE	YES	147	191	0.61	0.54	1.7465	0.8965	PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha,PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.61	2.643	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	137	69	FAM117A	6289	chr17:47824543:-	HDAC5	31312	chr17:42162043:-	ONLY_REF_SPLICE	YES	243	386	0.46	0.35	1.5951	0.8034	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.46	2.3985	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARFGEF2--STAU1	120	73	ARFGEF2	2910	chr20:47558524:+	STAU1	56614	chr20:47736665:-	ONLY_REF_SPLICE	YES	8	167	0.96	0.54	1.3972	0.85	LOCAL_INVERSION:+:-:[76648],ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.96	2.2472	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	3	343	FAM117A	7681	chr17:47809913:-	HDAC5	32133	chr17:42161222:-	ONLY_REF_SPLICE	YES	443	621	0.44	0.36	0.0349	3.9937	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.44	4.0286	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LSM12--MED13	67	62	LSM12	3290	chr17:42141169:-	MED13	37452	chr17:60038451:-	ONLY_REF_SPLICE	YES	208	14	0.38	0.9	0.7801	0.7219	LSM12->LSM12_homolog,chr17:42112003-42144987:-,MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.9	1.502	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDAC5--SCN4A	73	26	HDAC5	10865	chr17:42163940:-	SCN4A	47098	chr17:62016084:-	INCL_NON_REF_SPLICE	YES	372	5	0.21	0.95	0.85	0.3027	HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5,SCN4A->chr17:62015914-62050278:-,sodium_voltage-gated_channel_alpha_subunit_4	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.95	1.1527	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	59	81	FAM117A	7681	chr17:47809913:-	HDAC5	35105	chr17:42158250:-	ONLY_REF_SPLICE	YES	443	1477	0.24	0.09	0.687	0.9431	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.24	1.6301	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	15	154	FAM117A	7681	chr17:47809913:-	HDAC5	33167	chr17:42160188:-	ONLY_REF_SPLICE	YES	443	1387	0.28	0.11	0.1747	1.7931	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.28	1.9678	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBD1--UNC5C	30	32	TUBD1	4653	chr17:57963444:-	UNC5C	18576	chr4:96256782:-	ONLY_REF_SPLICE	YES	131	0	0.32	1	0.3493	0.3726	TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,UNC5C->chr4:96083655-96470357:-,unc-5_netrin_receptor_C	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.7219	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	18	73	FAM117A	5206	chr17:47841254:-	HDAC5	30832	chr17:42162523:-	ONLY_REF_SPLICE	YES	183	380	0.33	0.19	0.2096	0.85	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.33	1.0596	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDAC5--SCN4A	22	38	HDAC5	10865	chr17:42163940:-	SCN4A	46509	chr17:62016673:-	INCL_NON_REF_SPLICE	YES	372	0	0.14	1	0.2562	0.4424	HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5,SCN4A->chr17:62015914-62050278:-,sodium_voltage-gated_channel_alpha_subunit_4	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.6986	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LSM12--MED13	25	17	LSM12	3290	chr17:42141169:-	MED13	38676	chr17:60033842:-	ONLY_REF_SPLICE	YES	208	76	0.17	0.36	0.2911	0.1979	LSM12->LSM12_homolog,chr17:42112003-42144987:-,MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.36	0.489	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	11	68	FAM117A	5206	chr17:47841254:-	HDAC5	31312	chr17:42162043:-	ONLY_REF_SPLICE	YES	183	386	0.3	0.17	0.1281	0.7917	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.3	0.9198	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NEK1--CBR4	17	11	NEK1	17995	chr4:170458960:-	CBR4	50311	chr4:169785737:-	ONLY_REF_SPLICE	YES	11	2	0.72	0.93	0.1979	0.1281	NEK1->NIMA_related_kinase_1,chr4:170314426-170533780:-,CBR4->carbonyl_reductase_4,chr4:169784921-169931426:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.93	0.326	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	1	74	FAM117A	6289	chr17:47824543:-	HDAC5	30832	chr17:42162523:-	ONLY_REF_SPLICE	YES	243	380	0.24	0.16	0.0116	0.8616	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.24	0.8732	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASGRP3--VWC2	9	33	RASGRP3	4957	chr2:33701774:+	VWC2	41521	chr7:49951630:+	ONLY_REF_SPLICE	YES	6	313	0.88	0.12	0.1048	0.3842	RASGRP3->RAS_guanyl_releasing_protein_3,chr2:33661391-33789817:+,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.88	0.489	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASGRP3--VWC2	1	61	RASGRP3	4957	chr2:33701774:+	VWC2	38592	chr7:49814929:+	ONLY_REF_SPLICE	YES	6	0	0.91	1	0.0116	0.7102	RASGRP3->RAS_guanyl_releasing_protein_3,chr2:33661391-33789817:+,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.7218	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP3CA--PDLIM5	3	26	PPP3CA	3741	chr4:102117073:-	PDLIM5	33106	chr4:95494502:+	ONLY_REF_SPLICE	YES	147	172	0.16	0.14	0.0349	0.3027	PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha,PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.16	0.3376	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBD1--UNC5C	1	33	TUBD1	7004	chr17:57958255:-	UNC5C	18576	chr4:96256782:-	ONLY_REF_SPLICE	NO	51	0	0.4	1	0.0116	0.3842	TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,UNC5C->chr4:96083655-96470357:-,unc-5_netrin_receptor_C	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.3958	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRPEL1--D87015.1	9	0	GRPEL1	1227	chr4:7069698:-	D87015.1	10634	chr22:23101218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1048	0	GRPEL1->GrpE_like_1,_mitochondrial,chr4:7060633-7069924:-,D87015.1->chr22:23101185-23101279:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1048	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--PTRH2	6	1	CCSER1	1297	chr4:91048982:+	PTRH2	45132	chr17:57775339:-	ONLY_REF_SPLICE	YES	0	84	1	0.08	0.0699	0.0116	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHEK1--BMPR1B	5	3	CHEK1	11695	chr11:125514538:+	BMPR1B	21139	chr4:95796982:+	ONLY_REF_SPLICE	YES	66	0	0.11	1	0.0582	0.0349	CHEK1->ArcherDX_panel,FoundationOne_panel,checkpoint_kinase_1,chr11:125495036-125546150:+,BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0931	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AK7--PPP2R5C	4	1	AK7	18647	chr14:96944999:+	PPP2R5C	62593	chr14:102391478:+	ONLY_REF_SPLICE	YES	0	96	1	0.05	0.0466	0.0116	AK7->adenylate_kinase_7,chr14:96858448-96955764:+,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IRF2--ING2	4	0	IRF2	1202	chr4:185395533:-	ING2	18795	chr4:184431435:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},IRF2->ArcherDX_panel,FoundationOne_panel,chr4:185308867-185395734:-,interferon_regulatory_factor_2,ING2->Oncogene{Bushman},chr4:184426147-184432249:+,inhibitor_of_growth_family_member_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0466	TRUE	0	0	0	2	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARFGEF2--STAU1	2	6	ARFGEF2	1121	chr20:47538547:+	STAU1	56614	chr20:47736665:-	ONLY_REF_SPLICE	YES	14	167	0.36	0.05	0.0233	0.0699	LOCAL_INVERSION:+:-:[76648],ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.36	0.0932	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--NPM1	3	0	TXNDC5	2343	chr6:7910752:-	NPM1	18924	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0349	TRUE	0	0	0	5	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR7--RP11-958F21.3	2	2	WDR7	31874	chr18:54629760:+	RP11-958F21.3	43841	chr18:22636354:+	ONLY_REF_SPLICE	YES	28	0	0.12	1	0.0233	0.0233	WDR7->WD_repeat_domain_7,chr18:54318574-54698828:+,RP11-958F21.3->chr18:22635564-22636724:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPE--RP11-499E18.1	2	1	CPE	2705	chr4:166300680:+	RP11-499E18.1	22739	chr4:103340145:-	ONLY_REF_SPLICE	YES	0	80	1	0.04	0.0233	0.0116	CPE->carboxypeptidase_E,chr4:166282346-166419472:+,RP11-499E18.1->chr4:103339759-103371167:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BLCAP--B2M	2	0	BLCAP	1139	chr20:36156195:-	B2M	18196	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	BLCAP->Oncogene{Bushman},bladder_cancer_associated_protein,chr20:36120874-36156333:-,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BTBD7--ZC3H14	2	0	BTBD7	1273	chr14:93799166:-	ZC3H14	42992	chr14:89073587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC82--ANKS1A	2	0	CCDC82	1080	chr11:96123008:-	ANKS1A	31320	chr6:35021876:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CCDC82->chr11:96085933-96123087:-,coiled-coil_domain_containing_82,ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNN2--DAZAP1	2	0	CNN2	4331	chr19:1032695:+	DAZAP1	15810	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2]},CNN2->calponin_2,chr19:1026298-1039068:+,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	1	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DPY19L3--PITHD1	2	0	DPY19L3	4034	chr19:32902278:+	PITHD1	35832	chr1:24113765:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans),PITHD1->PITH_domain_containing_1,chr1:24104895-24114722:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LARP1--ZC3H3	2	0	LARP1	2848	chr5:154135753:+	ZC3H3	32245	chr8:144590069:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--BPHL	2	0	RCC1	2175	chr1:28834672:+	BPHL	25271	chr6:3137596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,BPHL->biphenyl_hydrolase-like_(serine_hydrolase),chr6:3118608-3153812:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC11C--PPP2R5C	2	0	SEC11C	1559	chr18:56807267:+	PPP2R5C	32778	chr14:102323023:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	SEC11C->SEC11_homolog_C,_signal_peptidase_complex_subunit,chr18:56806709-56826068:+,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SYNCRIP--PNRC1	2	0	SYNCRIP	1996	chr6:86352515:-	PNRC1	23376	chr6:89793472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=2;pct=0.02%;dist=Colon_-_Sigmoid=2},SYNCRIP->chr6:86318053-86353510:-,synaptotagmin_binding_cytoplasmic_RNA_interacting_protein,PNRC1->chr6:89790470-89794879:+,proline_rich_nuclear_receptor_coactivator_1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	2	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVRAG--FBXO32	2	0	UVRAG	22513	chr11:75776832:+	FBXO32	37350	chr8:124526573:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,FBXO32->F-box_protein_32,chr8:124510129-124553446:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB1--BMI1	2	0	ZEB1	1798	chr10:31608221:+	BMI1	31789	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	4	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--PTRH2	1	1	CCSER1	1297	chr4:91048982:+	PTRH2	42921	chr17:57777550:-	ONLY_REF_SPLICE	YES	0	55	1	0.04	0.0116	0.0116	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000854
NCIH1792_LUNG	PVT1--RP11-89M16.1	514	801	PVT1	8346	chr8:128903244:+	RP11-89M16.1	40686	chr8:129419092:-	ONLY_REF_SPLICE	YES	1275	153	0.51	0.9	6.5195	10.1597	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.51	0.9	16.6792	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	398	499	PVT1	8346	chr8:128903244:+	RP11-89M16.1	40899	chr8:129418879:-	ONLY_REF_SPLICE	YES	1275	147	0.41	0.86	5.0481	6.3292	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.41	0.86	11.3773	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	SRSF7--SOS1	268	143	SRSF7	2966	chr2:38976671:-	SOS1	31762	chr2:39224566:-	ONLY_REF_SPLICE	YES	509	29	0.45	0.93	3.3993	1.8138	SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	NCIH1792_LUNG	0.45	0.93	5.2131	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	225	295	PVT1	1202	chr8:128806980:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	2383	0	0.18	1	2.8538	3.7417	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.18	1	6.5955	TRUE	0	2	0	3	2	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	34	309	PVT1	2457	chr8:128808254:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	2450	0	0.12	1	0.4312	3.9193	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.12	1	4.3505	TRUE	0	2	0	3	2	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	8	311	PVT1	2520	chr8:128808317:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	2505	0	0.11	1	0.1015	3.9447	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.11	1	4.0462	TRUE	0	2	0	3	2	TRUE	ACH-000496
NCIH1792_LUNG	CCSER1--MMRN1	56	32	CCSER1	1297	chr4:91048982:+	MMRN1	41500	chr4:90815875:+	ONLY_REF_SPLICE	YES	7	0	0.93	1	0.7103	0.4059	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	NCIH1792_LUNG	0.93	1	1.1162	TRUE	0	3	0	5	3	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	40	58	PVT1	1202	chr8:128806980:+	RP11-89M16.1	40686	chr8:129419092:-	ONLY_REF_SPLICE	YES	2383	153	0.04	0.39	0.5074	0.7357	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.04	0.39	1.2431	TRUE	0	1	0	2	0	TRUE	ACH-000496
NCIH1792_LUNG	SRSF7--SOS1	10	159	SRSF7	3597	chr2:38976040:-	SOS1	31762	chr2:39224566:-	ONLY_REF_SPLICE	YES	559	29	0.23	0.85	0.1268	2.0167	SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	NCIH1792_LUNG	0.23	0.85	2.1435	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	SRGAP1--MSRB3	42	23	SRGAP1	5372	chr12:64383852:+	MSRB3	37969	chr12:65702309:+	ONLY_REF_SPLICE	YES	23	51	0.74	0.56	0.5327	0.2917	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	NCIH1792_LUNG	0.56	0.74	0.8244	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	SRSF7--SOS1	5	154	SRSF7	3255	chr2:38976382:-	SOS1	31762	chr2:39224566:-	INCL_NON_REF_SPLICE	YES	553	29	0.22	0.85	0.0634	1.9533	SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	NCIH1792_LUNG	0.22	0.85	2.0167	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	18	96	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34734	chr8:129435839:-	ONLY_REF_SPLICE	YES	2383	56	0.05	0.67	0.2283	1.2176	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.05	0.67	1.4459	TRUE	0	1	0	3	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	11	99	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34720	chr8:129435853:-	INCL_NON_REF_SPLICE	YES	2383	57	0.04	0.66	0.1395	1.2557	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.04	0.66	1.3952	TRUE	0	1	0	3	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	6	98	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34727	chr8:129435846:-	INCL_NON_REF_SPLICE	YES	2383	57	0.04	0.65	0.0761	1.243	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.04	0.65	1.3191	TRUE	0	1	0	3	0	TRUE	ACH-000496
NCIH1792_LUNG	INPP4B--PHKB	19	37	INPP4B	7802	chr4:143646992:-	PHKB	98216	chr16:47722952:+	ONLY_REF_SPLICE	YES	7	57	0.89	0.5	0.241	0.4693	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,PHKB->chr16:47495034-47735434:+,phosphorylase_kinase_beta_subunit	NCIH1792_LUNG	0.5	0.89	0.7103	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	2	100	PVT1	2520	chr8:128808317:+	RP11-89M16.1	34734	chr8:129435839:-	ONLY_REF_SPLICE	YES	2505	56	0.04	0.65	0.0254	1.2684	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.04	0.65	1.2938	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	1	99	PVT1	2457	chr8:128808254:+	RP11-89M16.1	34734	chr8:129435839:-	ONLY_REF_SPLICE	YES	2450	56	0.04	0.64	0.0127	1.2557	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.04	0.64	1.2684	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	R3HDM2--NFE2	21	9	R3HDM2	2356	chr12:57789532:-	NFE2	36116	chr12:54689088:-	ONLY_REF_SPLICE	YES	8	16	0.79	0.65	0.2664	0.1142	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,NFE2->chr12:54685895-54694905:-,nuclear_factor,_erythroid_2	NCIH1792_LUNG	0.65	0.79	0.3806	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	CAPRIN2--TMEM117	15	11	CAPRIN2	11422	chr12:30881582:-	TMEM117	38362	chr12:44770378:+	ONLY_REF_SPLICE	YES	52	2	0.33	0.93	0.1903	0.1395	CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-,TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	NCIH1792_LUNG	0.33	0.93	0.3298	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	CUX1--CDHR3	16	1	CUX1	1415	chr7:101459373:+	CDHR3	64564	chr7:105551463:+	ONLY_REF_SPLICE	YES	12	4	0.59	0.81	0.2029	0.0127	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,CDHR3->cadherin_related_family_member_3,chr7:105517242-105676877:+	NCIH1792_LUNG	0.59	0.81	0.2156	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	CCSER1--MMRN1	13	4	CCSER1	1297	chr4:91048982:+	MMRN1	44504	chr4:90830427:+	ONLY_REF_SPLICE	YES	7	19	0.71	0.47	0.1649	0.0507	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	NCIH1792_LUNG	0.47	0.71	0.2156	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	LSAMP--RP11-501O2.3	12	1	LSAMP	5056	chr3:116163724:-	RP11-501O2.3	26832	chr3:147878698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1522	0.0127	LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein,RP11-501O2.3->chr3:147878698-147944393:+	NCIH1792_LUNG	1	1	0.1649	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	INPP4B--PHKB	2	38	INPP4B	8922	chr4:143581930:-	PHKB	98216	chr16:47722952:+	ONLY_REF_SPLICE	YES	7	57	0.85	0.41	0.0254	0.482	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,PHKB->chr16:47495034-47735434:+,phosphorylase_kinase_beta_subunit	NCIH1792_LUNG	0.41	0.85	0.5074	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	TRAF2--TSPAN1	10	5	TRAF2	8092	chr9:139794972:+	TSPAN1	26518	chr1:46649863:+	ONLY_REF_SPLICE	YES	59	17	0.2	0.47	0.1268	0.0634	TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1	NCIH1792_LUNG	0.2	0.47	0.1902	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	AREL1--RP11-320M16.2	10	4	AREL1	4749	chr14:75158744:-	RP11-320M16.2	33712	chr14:32845248:-	ONLY_REF_SPLICE	YES	65	1	0.18	0.93	0.1268	0.0507	AREL1->apoptosis_resistant_E3_ubiquitin_protein_ligase_1,chr14:75120140-75179818:-,RP11-320M16.2->chr14:32842543-32887180:-	NCIH1792_LUNG	0.18	0.93	0.1775	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	TRAF2--TSPAN1	9	7	TRAF2	8092	chr9:139794972:+	TSPAN1	24695	chr1:46646772:+	ONLY_REF_SPLICE	YES	59	17	0.21	0.48	0.1142	0.0888	TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1	NCIH1792_LUNG	0.21	0.48	0.203	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	NUS1--RP11-667F9.2	8	5	NUS1	1584	chr6:117997248:+	RP11-667F9.2	12842	chr7:64928286:+	ONLY_REF_SPLICE	YES	168	0	0.07	1	0.1015	0.0634	NUS1->NUS1_dehydrodolichyl_diphosphate_synthase_subunit,chr6:117996665-118031803:+,RP11-667F9.2->chr7:64927984-64928351:+	NCIH1792_LUNG	0.07	1	0.1649	TRUE	0	1	0	2	0	TRUE	ACH-000496
NCIH1792_LUNG	INPP4B--PHKB	5	16	INPP4B	2181	chr4:143767362:-	PHKB	98216	chr16:47722952:+	ONLY_REF_SPLICE	YES	4	57	0.84	0.27	0.0634	0.2029	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,PHKB->chr16:47495034-47735434:+,phosphorylase_kinase_beta_subunit	NCIH1792_LUNG	0.27	0.84	0.2663	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	SMEK2--RP11-785H5.1	6	8	SMEK2	2249	chr2:55844767:-	RP11-785H5.1	28182	chr12:11324021:+	INCL_NON_REF_SPLICE	YES	8	0	0.64	1	0.0761	0.1015	SMEK2->chr2:55774428-55846015:-,RP11-785H5.1->chr12:11323963-11324164:+	NCIH1792_LUNG	0.64	1	0.1776	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	AP003900.6--AC008132.1	5	6	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0.0761	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH1792_LUNG	1	1	0.1395	TRUE	0	0	0	12	0	TRUE	ACH-000496
NCIH1792_LUNG	CUX1--CDHR3	6	2	CUX1	1415	chr7:101459373:+	CDHR3	63774	chr7:105550673:+	ONLY_REF_SPLICE	YES	12	7	0.4	0.53	0.0761	0.0254	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,CDHR3->cadherin_related_family_member_3,chr7:105517242-105676877:+	NCIH1792_LUNG	0.4	0.53	0.1015	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	AP003900.6--AC008132.1	5	2	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0.0254	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH1792_LUNG	1	1	0.0888	TRUE	0	0	0	16	0	TRUE	ACH-000496
NCIH1792_LUNG	DMD--DCLK2	4	6	DMD	29801	chrX:32509394:-	DCLK2	115533	chr4:151141855:+	ONLY_REF_SPLICE	YES	11	40	0.48	0.2	0.0507	0.0761	DMD->chrX:31115794-33357558:-,dystrophin,DCLK2->chr4:150999426-151178609:+,doublecortin_like_kinase_2	NCIH1792_LUNG	0.2	0.48	0.1268	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MYRIP--LSAMP	5	0	MYRIP	2003	chr3:39851407:+	LSAMP	31370	chr3:116163802:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0	MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	NCIH1792_LUNG	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	IMMP2L--DOCK4	4	1	IMMP2L	4976	chr7:111127294:-	DOCK4	58674	chr7:111409733:-	ONLY_REF_SPLICE	YES	34	43	0.13	0.1	0.0507	0.0127	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	NCIH1792_LUNG	0.1	0.13	0.0634	TRUE	0	0	0	2	0	TRUE	ACH-000496
NCIH1792_LUNG	TRAF2--TSPAN1	2	8	TRAF2	8092	chr9:139794972:+	TSPAN1	24121	chr1:46646198:+	ONLY_REF_SPLICE	YES	59	1	0.14	0.91	0.0254	0.1015	TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1	NCIH1792_LUNG	0.14	0.91	0.1269	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	DMD--DCLK2	2	6	DMD	29801	chrX:32509394:-	DCLK2	115536	chr4:151141858:+	ONLY_REF_SPLICE	YES	11	35	0.42	0.19	0.0254	0.0761	DMD->chrX:31115794-33357558:-,dystrophin,DCLK2->chr4:150999426-151178609:+,doublecortin_like_kinase_2	NCIH1792_LUNG	0.19	0.42	0.1015	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	SRGAP1--MSRB3	2	6	SRGAP1	5372	chr12:64383852:+	MSRB3	40381	chr12:65720606:+	ONLY_REF_SPLICE	YES	23	57	0.26	0.12	0.0254	0.0761	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	NCIH1792_LUNG	0.12	0.26	0.1015	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	ETV6--A2ML1-AS1	2	2	ETV6	11057	chr12:12022903:+	A2ML1-AS1	23050	chr12:8928980:-	ONLY_REF_SPLICE	YES	55	0	0.07	1	0.0254	0.0254	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,A2ML1-AS1->A2ML1_antisense_RNA_1,chr12:8928815-8983543:-	NCIH1792_LUNG	0.07	1	0.0508	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	AP003900.6--AC008132.1	2	0	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	13	0	TRUE	ACH-000496
NCIH1792_LUNG	CEP120--RP11-467L24.1	2	0	CEP120	8213	chr5:122734830:-	RP11-467L24.1	31036	chr16:64509592:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	CEP120->centrosomal_protein_120,chr5:122680579-122759286:-,RP11-467L24.1->chr16:64398684-64634150:+	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	DTD1--TTI1	2	0	DTD1	4657	chr20:18608877:+	TTI1	18780	chr20:36634799:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	DTD1->D-tyrosyl-tRNA_deacylase_1,chr20:18568537-18744561:+,TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	FAM208B--ASB13	2	0	FAM208B	1338	chr10:5727138:+	ASB13	35779	chr10:5695013:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_INVERSION:+:-:[18243],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,ASB13->ankyrin_repeat_and_SOCS_box_containing_13,chr10:5680830-5708558:-	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	TTC3--PPAP2A	2	0	TTC3	1248	chr21:38445773:+	PPAP2A	72529	chr5:54737736:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,PPAP2A->chr5:54720682-54830878:-	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	UGT1A6--C15orf41	2	0	UGT1A6	3214	chr2:234602511:+	C15orf41	19548	chr15:36932806:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	UGT1A6->UDP_glucuronosyltransferase_family_1_member_A6,chr2:234600253-234681946:+,C15orf41->chr15:36871812-37102449:+,chromosome_15_open_reading_frame_41	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	ZNF611--TXNRD1	2	0	ZNF611	1073	chr19:53238254:-	TXNRD1	46996	chr12:104732917:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	ZNF611->chr19:53206066-53238326:-,zinc_finger_protein_611,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	AP003900.6--AC008132.1	1	1	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	5	1	0.29	0.0127	0.0127	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH1792_LUNG	0.29	1	0.0254	TRUE	0	0	0	13	0	TRUE	ACH-000496
NCIH1792_LUNG	CUX1--CDHR3	1	1	CUX1	1415	chr7:101459373:+	CDHR3	65789	chr7:105552929:+	ONLY_REF_SPLICE	NO	12	10	0.14	0.17	0.0127	0.0127	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,CDHR3->cadherin_related_family_member_3,chr7:105517242-105676877:+	NCIH1792_LUNG	0.14	0.17	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
RERFLCSQ1_LUNG	COL1A1--COL7A1	141	3	COL1A1	13840	chr17:48265935:-	COL7A1	33641	chr3:48621185:-	INCL_NON_REF_SPLICE	NO	1955	148	0.07	0.49	1.3648	0.029	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	RERFLCSQ1_LUNG	0.07	0.49	1.3938	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	BACE2--TAPT1	82	22	BACE2	1775	chr21:42540502:+	TAPT1	30540	chr4:16204203:-	ONLY_REF_SPLICE	YES	33	18	0.76	0.85	0.7937	0.2129	BACE2->beta-site_APP-cleaving_enzyme_2,chr21:42539728-42654445:+,TAPT1->chr4:16162128-16229033:-,transmembrane_anterior_posterior_transformation_1	RERFLCSQ1_LUNG	0.76	0.85	1.0066	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	CNPY3--GLTSCR1L	54	16	CNPY3	3718	chr6:42903408:+	GLTSCR1L	17089	chr6:42819830:+	ONLY_REF_SPLICE	YES	131	9	0.35	0.89	0.5227	0.1549	LOCAL_REARRANGEMENT:+:[60640],CNPY3->canopy_FGF_signaling_regulator_3,chr6:42896938-42907025:+,GLTSCR1L->GLTSCR1_like,chr6:42749765-42836298:+	RERFLCSQ1_LUNG	0.35	0.89	0.6776	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	CD63--TGFBI	25	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.242	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	RERFLCSQ1_LUNG	1	1	0.242	TRUE	0	0	0	14	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	IGFBP7--KRT17	13	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1258	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	RERFLCSQ1_LUNG	1	1	0.1258	TRUE	0	0	0	9	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	VPS8--EPHA6	12	4	VPS8	48432	chr3:184658031:+	EPHA6	66214	chr3:96585669:+	ONLY_REF_SPLICE	YES	100	2	0.14	0.89	0.1162	0.0387	VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+,EPHA6->EPH_receptor_A6,chr3:96533425-97471304:+	RERFLCSQ1_LUNG	0.14	0.89	0.1549	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	BACE2--TAPT1	10	11	BACE2	1775	chr21:42540502:+	TAPT1	32725	chr4:16193146:-	ONLY_REF_SPLICE	YES	33	31	0.39	0.4	0.0968	0.1065	BACE2->beta-site_APP-cleaving_enzyme_2,chr21:42539728-42654445:+,TAPT1->chr4:16162128-16229033:-,transmembrane_anterior_posterior_transformation_1	RERFLCSQ1_LUNG	0.39	0.4	0.2033	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	FOCAD--RP11-399D6.2	8	3	FOCAD	1518	chr9:20658825:+	RP11-399D6.2	64014	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0774	0.029	FOCAD->chr9:20658308-20995954:+,focadhesin,RP11-399D6.2->chr9:22646199-22824212:+	RERFLCSQ1_LUNG	1	1	0.1064	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	MAPKAPK2--IKBKE	8	2	MAPKAPK2	1565	chr1:206858853:+	IKBKE	24760	chr1:206664152:+	ONLY_REF_SPLICE	YES	99	29	0.09	0.26	0.0774	0.0194	MAPKAPK2->Oncogene{Bushman},chr1:206858289-206907628:+,mitogen-activated_protein_kinase-activated_protein_kinase_2,IKBKE->ArcherDX_panel,FoundationOne_panel,chr1:206643791-206670223:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_epsilon	RERFLCSQ1_LUNG	0.09	0.26	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	FOCAD--DMRTA1	7	3	FOCAD	1518	chr9:20658825:+	DMRTA1	64809	chr9:22451063:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0678	0.029	FOCAD->chr9:20658308-20995954:+,focadhesin,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	RERFLCSQ1_LUNG	0.91	1	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	USP13--CASC5	7	3	USP13	21655	chr3:179483636:+	CASC5	51861	chr15:40937195:+	ONLY_REF_SPLICE	YES	107	46	0.09	0.18	0.0678	0.029	USP13->chr3:179370543-179507189:+,ubiquitin_specific_peptidase_13_(isopeptidase_T-3),CASC5->Oncogene{Bushman},cancer_susceptibility_candidate_5,chr15:40886218-40956540:+	RERFLCSQ1_LUNG	0.09	0.18	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	VIM--ACTB	4	0	VIM	2082	chr10:17271339:+	ACTB	15618	chr7:5570234:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	RERFLCSQ1_LUNG	1	1	0.0387	TRUE	0	0	0	9	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	FOCAD--RP11-399D6.2	2	3	FOCAD	2834	chr9:20684292:+	RP11-399D6.2	64014	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0.029	FOCAD->chr9:20658308-20995954:+,focadhesin,RP11-399D6.2->chr9:22646199-22824212:+	RERFLCSQ1_LUNG	1	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	RP11-114H21.2--CTB-1I21.1	1	7	RP11-114H21.2	2303	chr5:135840382:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.0097	0.0678	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	RERFLCSQ1_LUNG	0.73	1	0.0775	TRUE	0	0	0	4	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	RP11-6N13.1--CTD-2374C24.1	2	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0.0097	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	RERFLCSQ1_LUNG	1	1	0.0291	TRUE	1	1	0	17	1	TRUE	ACH-000442
RERFLCSQ1_LUNG	BEAN1--C9orf3	2	0	BEAN1	1135	chr16:66461334:+	C9orf3	53601	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	BEAN1->brain_expressed,_associated_with_NEDD4,_1,chr16:66461200-66527432:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	FER--CEP120	2	0	FER	3318	chr5:108103939:+	CEP120	48367	chr5:122734978:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	FER->FER_tyrosine_kinase,chr5:108083523-108532542:+,CEP120->centrosomal_protein_120,chr5:122680579-122759286:-	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	G3BP1--CTD-2410N18.5	2	0	G3BP1	1992	chr5:151151597:+	CTD-2410N18.5	27988	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTD-2410N18.5->chr5:133502861-133561762:-	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	4	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	KIAA0101--PICALM	2	0	KIAA0101	3906	chr15:64673525:-	PICALM	14368	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	KIAA0101->KIAA0101,chr15:64657193-64679886:-,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	KIRREL3--CWF19L2	2	0	KIRREL3	2916	chr11:126870351:-	CWF19L2	37675	chr11:107289013:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila),CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	MAPKAPK2--RASSF5	2	0	MAPKAPK2	1565	chr1:206858853:+	RASSF5	12654	chr1:206711501:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[95673],MAPKAPK2->Oncogene{Bushman},chr1:206858289-206907628:+,mitogen-activated_protein_kinase-activated_protein_kinase_2,RASSF5->Ras_association_domain_family_member_5,chr1:206680879-206762616:+	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	PACSIN2--C1orf112	2	0	PACSIN2	1125	chr22:43411027:-	C1orf112	57641	chr1:169821931:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,C1orf112->chr1:169631245-169823221:+,chromosome_1_open_reading_frame_112	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	RPS6KB1--VMP1	2	0	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	9	0	11	6	TRUE	ACH-000442
RERFLCSQ1_LUNG	SURF1--SURF4	2	0	SURF1	3802	chr9:136220604:-	SURF4	12492	chr9:136231902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:-:[4773],SURF1->chr9:136218610-136223552:-,surfeit_1,SURF4->chr9:136228325-136242970:-,surfeit_4	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	VPS8--RP11-329B9.1	2	0	VPS8	1083	chr3:184530013:+	RP11-329B9.1	65962	chr3:184483257:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_INVERSION:+:-:[38988],VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+,RP11-329B9.1->chr3:184474177-184490943:-	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	FOCAD--DMRTA1	1	1	FOCAD	1151	chr9:20658458:+	DMRTA1	64809	chr9:22451063:+	ONLY_REF_SPLICE	YES	4	1	0.33	0.67	0.0097	0.0097	FOCAD->chr9:20658308-20995954:+,focadhesin,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	RERFLCSQ1_LUNG	0.33	0.67	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	ZNF430--TMEM71	1	1	ZNF430	4006	chr19:21216990:+	TMEM71	23079	chr8:133740232:-	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0097	0.0097	ZNF430->chr19:21203426-21242856:+,zinc_finger_protein_430,TMEM71->chr8:133697253-133772958:-,transmembrane_protein_71	RERFLCSQ1_LUNG	0.5	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
DMS273_LUNG	FHL3--POGZ	99	12	FHL3	1168	chr1:38471111:-	POGZ	22683	chr1:151384872:-	ONLY_REF_SPLICE	YES	1	136	0.99	0.45	1.197	0.1451	FHL3->chr1:38462442-38471278:-,four_and_a_half_LIM_domains_3,POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain	DMS273_LUNG	0.45	0.99	1.3421	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	FHL3--POGZ	50	14	FHL3	1250	chr1:38471029:-	POGZ	22683	chr1:151384872:-	ONLY_REF_SPLICE	YES	2	136	0.97	0.32	0.6046	0.1693	FHL3->chr1:38462442-38471278:-,four_and_a_half_LIM_domains_3,POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain	DMS273_LUNG	0.32	0.97	0.7739	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	ZFPM2--CASC11	13	3	ZFPM2	12920	chr8:106646585:+	CASC11	26149	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	32	0	0.33	1	0.1572	0.0363	ZFPM2->chr8:106330920-106816760:+,zinc_finger_protein,_FOG_family_member_2,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	DMS273_LUNG	0.33	1	0.1935	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	ABCA5--STMN1	2	0	ABCA5	1193	chr17:67323193:-	STMN1	52047	chr1:26231229:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,STMN1->chr1:26210672-26233482:-,stathmin_1	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	ELAVL1--CTD-2619J13.14	2	0	ELAVL1	3505	chr19:8056528:-	CTD-2619J13.14	18770	chr19:58918137:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,CTD-2619J13.14->chr19:58915605-58919851:-	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	FMNL2--ARL5A	2	0	FMNL2	1484	chr2:153192234:+	ARL5A	37661	chr2:152671713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	FMNL2->chr2:153191751-153506348:+,formin_like_2,ARL5A->ADP_ribosylation_factor_like_GTPase_5A,chr2:152645498-152685006:-	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	KIF22--C17orf53	2	0	KIF22	6675	chr16:29811369:+	C17orf53	22290	chr17:42235201:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	KIF22->chr16:29802040-29816706:+,kinesin_family_member_22,C17orf53->chr17:42219274-42239844:+,chromosome_17_open_reading_frame_53	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	PABPC4--VPS72	2	0	PABPC4	9730	chr1:40030095:-	VPS72	21212	chr1:151150621:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4,VPS72->chr1:151142463-151167797:-,vacuolar_protein_sorting_72_homolog	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	PNN--EWSR1	2	0	PNN	5195	chr14:39648666:+	EWSR1	26997	chr22:29688126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PNN->chr14:39644387-39652422:+,pinin,_desmosome_associated_protein,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	PTRH2--PABPC1	2	0	PTRH2	1256	chr17:57784732:-	PABPC1	24175	chr8:101715587:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	RCC1--GABPB2	2	0	RCC1	2175	chr1:28834672:+	GABPB2	21386	chr1:151060666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	RLF--TARS2	2	0	RLF	5837	chr1:40668286:+	TARS2	26848	chr1:150476811:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,TARS2->chr1:150459887-150480078:+,threonyl-tRNA_synthetase_2,_mitochondrial_(putative)	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	RP5-884C9.2--SMAP2	2	0	RP5-884C9.2	1301	chr1:38513286:+	SMAP2	9746	chr1:40827972:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RP5-884C9.2->chr1:38512986-38584697:+,SMAP2->chr1:40810522-40888998:+,small_ArfGAP2	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	SEC24B-AS1--KIAA0947	2	0	SEC24B-AS1	2139	chr4:110352848:-	KIAA0947	39576	chr5:5476086:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SEC24B-AS1->SEC24B_antisense_RNA_1,chr4:110268631-110354973:-,KIAA0947->chr5:5420777-5490347:+	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	ZNF793--FAM35A	2	0	ZNF793	2465	chr19:37999305:+	FAM35A	35570	chr10:88950241:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ZNF793->chr19:37997841-38039664:+,zinc_finger_protein_793,FAM35A->chr10:88853918-88951225:+,family_with_sequence_similarity_35_member_A	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
NCIH292_LUNG	CRTC1--MAML2	40	15	CRTC1	1152	chr19:18794638:+	MAML2	27695	chr11:95826681:-	ONLY_REF_SPLICE	YES	4	5	0.93	0.92	0.3693	0.1385	Cosmic{samples=632,mutations=253,papers=36},Mitelman{CA_mucep=2},chimerdb_omim:{humanmalignantsalivaryglandtumor},chimerdb_omim:{mucoepidermoidcarcinoma},chimerdb_pubmed{Mucoepidermoid carcinomas (MEC),mucoepidermoid carcinoma,mucoepidermoid carcinoma and Warthin's tumor of salivary glands,Warthin's tumor, mucoepidermoid carcinoma,mucoepidermoid carcinoma (MEC), Warthin tumors (WT),Mucoepidermoid carcinoma},{Klijn_CCL:Lung=1},CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	NCIH292_LUNG	0.92	0.93	0.5078	TRUE	0	1	0	1	1	TRUE	ACH-001075
NCIH292_LUNG	IGFBP7--KRT17	9	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	NCIH292_LUNG	1	1	0.0831	TRUE	0	0	0	9	0	TRUE	ACH-001075
NCIH292_LUNG	IGFBP7--KRT17	5	2	IGFBP7	1147	chr4:57976405:-	KRT17	10592	chr17:39780778:-	INCL_NON_REF_SPLICE	YES	85	1	0.08	0.88	0.0462	0.0185	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	NCIH292_LUNG	0.08	0.88	0.0647	TRUE	0	0	0	9	0	TRUE	ACH-001075
NCIH292_LUNG	PTP4A1--MT2A	3	0	PTP4A1	3933	chr6:64282517:+	MT2A	16021	chr16:56642496:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1,MT2A->chr16:56642111-56643409:+,metallothionein_2A	NCIH292_LUNG	1	1	0.0277	TRUE	0	0	0	2	0	TRUE	ACH-001075
NCIH292_LUNG	ABCC10--SAT1	2	0	ABCC10	9876	chr6:43406533:+	SAT1	24601	chrX:23803445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	ABCC10->ATP_binding_cassette_subfamily_C_member_10,chr6:43395104-43418168:+,SAT1->chrX:23801290-23804343:+,spermidine/spermine_N1-acetyltransferase_1	NCIH292_LUNG	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-001075
NCIH292_LUNG	CTTN--RPS6KA4	2	0	CTTN	11290	chr11:70266616:+	RPS6KA4	26248	chr11:64128606:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,RPS6KA4->chr11:64126620-64139687:+,ribosomal_protein_S6_kinase_A4	NCIH292_LUNG	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-001075
NCIH292_LUNG	GRHL2--AZIN1	2	0	GRHL2	1358	chr8:102505017:+	AZIN1	30959	chr8:103870378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	NCIH292_LUNG	1	1	0.0185	TRUE	0	1	0	1	1	TRUE	ACH-001075
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGFR1OP2--FGFR1	472	225	FGFR1OP2	5274	chr12:27110676:+	FGFR1	36749	chr8:38275891:-	ONLY_REF_SPLICE	YES	127	2	0.85	1	6.7919	3.2377	chimerdb_omim:{T-celllymphoblasticlymphoma},{Klijn_CCL:Lymphoid=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	10.0296	TRUE	0	0	0	1	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM9B--HCLS1	38	0	TMEM9B	1652	chr11:8985907:-	HCLS1	26041	chr3:121351323:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5468	0	TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5468	TRUE	1	0	0	2	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ST7--TFEC	27	8	ST7	1454	chr7:116593745:+	TFEC	43945	chr7:115752092:-	ONLY_REF_SPLICE	YES	16	0	0.69	1	0.3885	0.1151	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,TFEC->chr7:115575202-115799950:-,transcription_factor_EC	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.5036	TRUE	0	0	0	1	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRIA3--STAG2	19	9	GRIA3	7855	chrX:122460064:+	STAG2	35373	chrX:123155217:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2734	0.1295	GRIA3->chrX:122318006-122624766:+,glutamate_ionotropic_receptor_AMPA_type_subunit_3,STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4029	TRUE	0	0	0	1	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRIA3--STAG2	8	8	GRIA3	7855	chrX:122460064:+	STAG2	36438	chrX:123156381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1151	0.1151	GRIA3->chrX:122318006-122624766:+,glutamate_ionotropic_receptor_AMPA_type_subunit_3,STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2302	TRUE	0	0	0	1	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R9A--XRCC2	4	2	PPP1R9A	15374	chr7:94881442:+	XRCC2	35538	chr7:152357867:-	ONLY_REF_SPLICE	YES	6	2	0.5	0.75	0.0576	0.0288	{Klijn_CCL:Lymphoid=1},PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A,XRCC2->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_2,chr7:152341864-152373250:-	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.75	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ST7--TFEC	3	0	ST7	1454	chr7:116593745:+	TFEC	50860	chr7:115596847:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,TFEC->chr7:115575202-115799950:-,transcription_factor_EC	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R9A--XRCC2	1	1	PPP1R9A	15374	chr7:94881442:+	XRCC2	36620	chr7:152346448:-	ONLY_REF_SPLICE	YES	6	25	0.25	0.07	0.0144	0.0144	{Klijn_CCL:Lymphoid=1},PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A,XRCC2->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_2,chr7:152341864-152373250:-	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.25	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000386
SKMEL1_SKIN	RABGAP1--CTD-2353F22.1	270	75	RABGAP1	3561	chr9:125719488:+	CTD-2353F22.1	41246	chr5:36668813:-	ONLY_REF_SPLICE	YES	12	0	0.97	1	2.625	0.7292	RABGAP1->RAB_GTPase_activating_protein_1,chr9:125703112-125867145:+,CTD-2353F22.1->chr5:36666316-36725297:-	SKMEL1_SKIN	0.97	1	3.3542	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	OTOA--METTL9	196	73	OTOA	5955	chr16:21698969:+	METTL9	39525	chr16:21623966:+	ONLY_REF_SPLICE	YES	0	1237	1	0.18	1.9056	0.7097	LOCAL_REARRANGEMENT:+:[21041],OTOA->chr16:21689835-21772050:+,otoancorin,METTL9->chr16:21608539-21668794:+,methyltransferase_like_9	SKMEL1_SKIN	0.18	1	2.6153	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	USP15--RP11-417L19.4	86	14	USP15	1166	chr12:62654284:+	RP11-417L19.4	37313	chr12:132413884:-	INCL_NON_REF_SPLICE	YES	35	0	0.74	1	0.8361	0.1361	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RP11-417L19.4->chr12:132409281-132413896:-	SKMEL1_SKIN	0.74	1	0.9722	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	TADA2A--C17orf78	51	27	TADA2A	2741	chr17:35771477:+	C17orf78	29021	chr17:35736075:+	ONLY_REF_SPLICE	YES	35	0	0.69	1	0.4958	0.2625	{Klijn_CCL:Skin=1},LOCAL_REARRANGEMENT:+:[17303],TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,C17orf78->chr17:35732928-35749662:+,chromosome_17_open_reading_frame_78	SKMEL1_SKIN	0.69	1	0.7583	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	FUT8--NUMB	50	20	FUT8	22918	chr14:66200099:+	NUMB	40912	chr14:73783130:-	ONLY_REF_SPLICE	YES	18	51	0.8	0.58	0.4861	0.1944	{Klijn_CCL:Skin=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	SKMEL1_SKIN	0.58	0.8	0.6805	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	PPP1R12A--PSEN1	42	21	PPP1R12A	1766	chr12:80328475:-	PSEN1	58252	chr14:73678477:+	ONLY_REF_SPLICE	YES	65	40	0.49	0.61	0.4083	0.2042	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,PSEN1->chr14:73603126-73690399:+,presenilin_1	SKMEL1_SKIN	0.49	0.61	0.6125	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	ZBTB26--AGAP2	45	2	ZBTB26	1064	chr9:125693716:-	AGAP2	13231	chr12:58129210:-	ONLY_REF_SPLICE	YES	0	4	1	0.92	0.4375	0.0194	ZBTB26->chr9:125677845-125693779:-,zinc_finger_and_BTB_domain_containing_26,AGAP2->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_2,Oncogene{Bushman},chr12:58118980-58135940:-	SKMEL1_SKIN	0.92	1	0.4569	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	FUT8--NUMB	40	16	FUT8	22918	chr14:66200099:+	NUMB	44035	chr14:73763993:-	ONLY_REF_SPLICE	YES	18	48	0.76	0.54	0.3889	0.1556	{Klijn_CCL:Skin=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	SKMEL1_SKIN	0.54	0.76	0.5445	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	RABGAP1--CTD-2353F22.1	34	25	RABGAP1	3561	chr9:125719488:+	CTD-2353F22.1	42393	chr5:36666586:-	ONLY_REF_SPLICE	YES	12	45	0.83	0.57	0.3306	0.2431	RABGAP1->RAB_GTPase_activating_protein_1,chr9:125703112-125867145:+,CTD-2353F22.1->chr5:36666316-36725297:-	SKMEL1_SKIN	0.57	0.83	0.5737	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	TERT--SLC6A3	38	3	TERT	16058	chr5:1255402:-	SLC6A3	36459	chr5:1401101:-	ONLY_REF_SPLICE	YES	173	0	0.19	1	0.3694	0.0292	LOCAL_REARRANGEMENT:-:[97725],TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase,SLC6A3->Oncogene{Bushman},chr5:1392909-1445545:-,solute_carrier_family_6_member_3	SKMEL1_SKIN	0.19	1	0.3986	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	BABAM1--OCEL1	35	8	BABAM1	2711	chr19:17379900:+	OCEL1	15364	chr19:17339065:+	ONLY_REF_SPLICE	YES	171	17	0.2	0.72	0.3403	0.0778	{Klijn_CCL:Skin=1},LOCAL_REARRANGEMENT:+:[38131],BABAM1->BRISC_and_BRCA1_A_complex_member_1,chr19:17378159-17392058:+,OCEL1->chr19:17337013-17340028:+,occludin/ELL_domain_containing_1	SKMEL1_SKIN	0.2	0.72	0.4181	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	KIAA1984--CDH18	29	4	KIAA1984	4889	chr9:139697238:+	CDH18	16891	chr5:19981287:-	ONLY_REF_SPLICE	YES	1	7	0.97	0.82	0.2819	0.0389	KIAA1984->chr9:139690802-139702193:+,CDH18->cadherin_18,chr5:19473060-20575982:-	SKMEL1_SKIN	0.82	0.97	0.3208	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	TMED2--RP11-351O2.1	26	7	TMED2	5209	chr12:124074996:+	RP11-351O2.1	12658	chr12:128084153:+	INCL_NON_REF_SPLICE	YES	678	0	0.05	1	0.2528	0.0681	TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2,RP11-351O2.1->chr12:128082713-128084260:+	SKMEL1_SKIN	0.05	1	0.3209	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	RP11-178C3.2--VMP1	23	6	RP11-178C3.2	2422	chr17:58043828:+	VMP1	25342	chr17:57915656:+	ONLY_REF_SPLICE	YES	12	147	0.71	0.16	0.2236	0.0583	RP11-178C3.2->chr17:58042193-58074333:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SKMEL1_SKIN	0.16	0.71	0.2819	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	EPHB2--RP11-114H23.2	22	1	EPHB2	1205	chr1:23037536:+	RP11-114H23.2	27730	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2139	0.0097	EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+,RP11-114H23.2->chr12:76087790-76092596:-	SKMEL1_SKIN	1	1	0.2236	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	TERT--SLC6A3	16	6	TERT	17741	chr5:1253719:-	SLC6A3	36459	chr5:1401101:-	INCL_NON_REF_SPLICE	YES	140	0	0.14	1	0.1556	0.0583	LOCAL_REARRANGEMENT:-:[97725],TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase,SLC6A3->Oncogene{Bushman},chr5:1392909-1445545:-,solute_carrier_family_6_member_3	SKMEL1_SKIN	0.14	1	0.2139	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	TADA2A--C17orf78	9	30	TADA2A	2741	chr17:35771477:+	C17orf78	27934	chr17:35734817:+	ONLY_REF_SPLICE	YES	35	0	0.53	1	0.0875	0.2917	{Klijn_CCL:Skin=1},LOCAL_REARRANGEMENT:+:[17303],TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,C17orf78->chr17:35732928-35749662:+,chromosome_17_open_reading_frame_78	SKMEL1_SKIN	0.53	1	0.3792	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	OSBPL8--GALNT9	14	5	OSBPL8	1413	chr12:76953177:-	GALNT9	40086	chr12:132863016:-	ONLY_REF_SPLICE	YES	42	1	0.31	0.95	0.1361	0.0486	OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8,GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9	SKMEL1_SKIN	0.31	0.95	0.1847	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	EGFLAM--CTD-2116N24.1	13	7	EGFLAM	1443	chr5:38258953:+	CTD-2116N24.1	35022	chr5:38183806:+	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.1264	0.0681	LOCAL_REARRANGEMENT:+:[74477],EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+,CTD-2116N24.1->chr5:38025799-38184034:+	SKMEL1_SKIN	0.91	1	0.1945	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	AFF1--TECR	14	1	AFF1	6061	chr4:87928576:+	TECR	47173	chr19:14675598:+	ONLY_REF_SPLICE	YES	19	318	0.44	0.05	0.1361	0.0097	GTEx&tcga_normals:163/3694=4.41%,GTEx:1.69%,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,TECR->chr19:14627897-14676792:+,trans-2,3-enoyl-CoA_reductase	SKMEL1_SKIN	0.05	0.44	0.1458	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	USP15--RP11-351N6.1	12	0	USP15	1166	chr12:62654284:+	RP11-351N6.1	38444	chr5:26389792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1167	0	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RP11-351N6.1->chr5:26382628-26399928:-	SKMEL1_SKIN	1	1	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	PPM1H--PRMT8	11	3	PPM1H	1546	chr12:63328272:-	PRMT8	25935	chr12:3649772:+	ONLY_REF_SPLICE	YES	26	0	0.35	1	0.1069	0.0292	PPM1H->chr12:63037762-63328817:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1H,PRMT8->chr12:3490515-3703139:+,protein_arginine_methyltransferase_8	SKMEL1_SKIN	0.35	1	0.1361	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	ZC3H13--ERCC1	11	0	ZC3H13	13296	chr13:46559432:-	ERCC1	37499	chr19:45926639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1069	0	ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1	SKMEL1_SKIN	1	1	0.1069	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	BABAM1--OCEL1	8	9	BABAM1	2711	chr19:17379900:+	OCEL1	14948	chr19:17338649:+	ONLY_REF_SPLICE	YES	171	5	0.09	0.77	0.0778	0.0875	{Klijn_CCL:Skin=1},LOCAL_REARRANGEMENT:+:[38131],BABAM1->BRISC_and_BRCA1_A_complex_member_1,chr19:17378159-17392058:+,OCEL1->chr19:17337013-17340028:+,occludin/ELL_domain_containing_1	SKMEL1_SKIN	0.09	0.77	0.1653	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	CPB2-AS1--PYROXD2	9	3	CPB2-AS1	5815	chr13:46672916:+	PYROXD2	19605	chr10:100157255:-	ONLY_REF_SPLICE	YES	9	0	0.57	1	0.0875	0.0292	CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,PYROXD2->chr10:100143322-100174941:-,pyridine_nucleotide-disulphide_oxidoreductase_domain_2	SKMEL1_SKIN	0.57	1	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	TERT--SLC6A3	8	0	TERT	14933	chr5:1258713:-	SLC6A3	36459	chr5:1401101:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0778	0	LOCAL_REARRANGEMENT:-:[97725],TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase,SLC6A3->Oncogene{Bushman},chr5:1392909-1445545:-,solute_carrier_family_6_member_3	SKMEL1_SKIN	1	1	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	R3HDM2--RP1-90J4.3	7	1	R3HDM2	2356	chr12:57789532:-	RP1-90J4.3	33473	chr12:47879381:+	INCL_NON_REF_SPLICE	YES	2	10	0.8	0.44	0.0681	0.0097	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,RP1-90J4.3->chr12:47878472-47879505:+	SKMEL1_SKIN	0.44	0.8	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	CPB2-AS1--ZC3H13	6	0	CPB2-AS1	1160	chr13:46627100:+	ZC3H13	17040	chr13:46594692:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0583	0	LOCAL_INVERSION:+:-:[47],CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	SKMEL1_SKIN	1	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	EGFLAM--CTD-2207A17.1	5	4	EGFLAM	1443	chr5:38258953:+	CTD-2207A17.1	33911	chr5:38151367:+	ONLY_REF_SPLICE	YES	2	3	0.82	0.75	0.0486	0.0389	EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+,CTD-2207A17.1->chr5:38148582-38153817:+	SKMEL1_SKIN	0.75	0.82	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	EPHB2--RP11-114H23.2	6	0	EPHB2	1205	chr1:23037536:+	RP11-114H23.2	27758	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+,RP11-114H23.2->chr12:76087790-76092596:-	SKMEL1_SKIN	1	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	ZBTB26--AGAP2	5	2	ZBTB26	1060	chr9:125693720:-	AGAP2	13231	chr12:58129210:-	INCL_NON_REF_SPLICE	YES	0	4	1	0.64	0.0486	0.0194	ZBTB26->chr9:125677845-125693779:-,zinc_finger_and_BTB_domain_containing_26,AGAP2->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_2,Oncogene{Bushman},chr12:58118980-58135940:-	SKMEL1_SKIN	0.64	1	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	NEMF--SOS2	5	1	NEMF	27383	chr14:50262509:-	SOS2	46380	chr14:50641270:-	ONLY_REF_SPLICE	YES	75	32	0.07	0.16	0.0486	0.0097	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	SKMEL1_SKIN	0.07	0.16	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	ZC3H13--LCP1	5	0	ZC3H13	1356	chr13:46626539:-	LCP1	39147	chr13:46733821:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	LOCAL_REARRANGEMENT:-:[73161],ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1	SKMEL1_SKIN	1	1	0.0486	TRUE	0	0	0	2	0	TRUE	ACH-000465
SKMEL1_SKIN	EGFLAM--CTD-2207A17.1	4	2	EGFLAM	1443	chr5:38258953:+	CTD-2207A17.1	34216	chr5:38151672:+	INCL_NON_REF_SPLICE	YES	2	4	0.75	0.6	0.0389	0.0194	EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+,CTD-2207A17.1->chr5:38148582-38153817:+	SKMEL1_SKIN	0.6	0.75	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	RP11-351N6.1--RP11-417L19.4	4	1	RP11-351N6.1	2227	chr5:26389709:-	RP11-417L19.4	8440	chr12:132413884:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0.0097	RP11-351N6.1->chr5:26382628-26399928:-,RP11-417L19.4->chr12:132409281-132413896:-	SKMEL1_SKIN	1	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	SMG6--METTL16	4	0	SMG6	9695	chr17:2185941:-	METTL16	49424	chr17:2344853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-,METTL16->chr17:2308856-2415185:-,methyltransferase_like_16	SKMEL1_SKIN	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	STAT5B--TYK2	4	0	STAT5B	1460	chr17:40428266:-	TYK2	23280	chr19:10490455:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0	STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,TYK2->chr19:10461209-10491352:-,tyrosine_kinase_2	SKMEL1_SKIN	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	PPP1R12A--PSEN1	3	3	PPP1R12A	1766	chr12:80328475:-	PSEN1	59426	chr14:73683834:+	ONLY_REF_SPLICE	YES	65	27	0.08	0.18	0.0292	0.0292	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,PSEN1->chr14:73603126-73690399:+,presenilin_1	SKMEL1_SKIN	0.08	0.18	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	GCN1L1--LINC00508	3	2	GCN1L1	9013	chr12:120612965:-	LINC00508	48759	chr12:128425280:-	ONLY_REF_SPLICE	YES	117	0	0.04	1	0.0292	0.0194	GCN1L1->chr12:120565007-120632513:-,LINC00508->chr12:128425140-128434705:-,long_intergenic_non-protein_coding_RNA_508	SKMEL1_SKIN	0.04	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	CPB2-AS1--ZC3H13	3	0	CPB2-AS1	1160	chr13:46627100:+	ZC3H13	18150	chr13:46585689:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_INVERSION:+:-:[47],CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	SKMEL1_SKIN	1	1	0.0292	TRUE	0	0	0	2	0	TRUE	ACH-000465
SKMEL1_SKIN	EPHB2--RP11-114H23.2	3	0	EPHB2	1205	chr1:23037536:+	RP11-114H23.2	27935	chr12:76088550:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+,RP11-114H23.2->chr12:76087790-76092596:-	SKMEL1_SKIN	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	KIAA1984--CDH18	2	4	KIAA1984	4889	chr9:139697238:+	CDH18	14604	chr5:19992123:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0194	0.0389	KIAA1984->chr9:139690802-139702193:+,CDH18->cadherin_18,chr5:19473060-20575982:-	SKMEL1_SKIN	0.86	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	RCC1--DHRSX	3	0	RCC1	2175	chr1:28834672:+	DHRSX	29742	chrX:2161271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked	SKMEL1_SKIN	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	CTD-2547E10.2--IGSF6	2	2	CTD-2547E10.2	9565	chr16:21487920:-	IGSF6	33704	chr16:21658813:-	ONLY_REF_SPLICE	YES	58	0	0.06	1	0.0194	0.0194	CTD-2547E10.2->chr16:21458004-21531765:-,IGSF6->chr16:21652609-21663981:-,immunoglobulin_superfamily_member_6	SKMEL1_SKIN	0.06	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	PRKCA--CEP95	2	1	PRKCA	4995	chr17:64492401:+	CEP95	43965	chr17:62517520:+	ONLY_REF_SPLICE	YES	8	27	0.27	0.1	0.0194	0.0097	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,CEP95->centrosomal_protein_95,chr17:62502706-62538579:+	SKMEL1_SKIN	0.1	0.27	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	PRR4--RP11-575F12.1	2	1	PRR4	1192	chr12:11324021:-	RP11-575F12.1	27951	chr12:127485195:-	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0194	0.0097	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),RP11-575F12.1->chr12:127399766-127544946:-	SKMEL1_SKIN	0.14	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	BABAM1--EXOSC10	2	0	BABAM1	1178	chr19:17378336:+	EXOSC10	25447	chr1:11137005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	BABAM1->BRISC_and_BRCA1_A_complex_member_1,chr19:17378159-17392058:+,EXOSC10->chr1:11126675-11159938:-,exosome_component_10	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	CPB2-AS1--ZC3H13	2	0	CPB2-AS1	1160	chr13:46627100:+	ZC3H13	23051	chr13:46563232:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_INVERSION:+:-:[47],CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	2	0	TRUE	ACH-000465
SKMEL1_SKIN	EGFLAM--CTD-2207A17.1	1	4	EGFLAM	2629	chr5:38305719:+	CTD-2207A17.1	33911	chr5:38151367:+	ONLY_REF_SPLICE	NO	1	3	0.83	0.62	0.0097	0.0389	EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+,CTD-2207A17.1->chr5:38148582-38153817:+	SKMEL1_SKIN	0.62	0.83	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	MFN2--PLOD1	2	0	MFN2	2609	chr1:12042171:+	PLOD1	30722	chr1:12016974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:+:[4643],MFN2->chr1:12040238-12073571:+,mitofusin_2,PLOD1->chr1:11994262-12035595:+,procollagen-lysine,2-oxoglutarate_5-dioxygenase_1	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	MGAT5--TMEM163	2	0	MGAT5	16255	chr2:135170586:+	TMEM163	30846	chr2:135470889:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_INVERSION:+:-:[1138],MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	PLXNB1--ATRIP	2	0	PLXNB1	12607	chr3:48456992:-	ATRIP	35209	chr3:48505144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_INVERSION:-:+:[16520],PLXNB1->Oncogene{Bushman},chr3:48445261-48471594:-,plexin_B1,ATRIP->ATR_interacting_protein,chr3:48488114-48507115:+	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	PTPRN2--PINX1	2	0	PTPRN2	25202	chr7:157361594:-	PINX1	41928	chr8:10623426:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	RP5-1039K5.16--BAIAP2L2	2	0	RP5-1039K5.16	1064	chr22:38430172:-	BAIAP2L2	15035	chr22:38483271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:-:[50661],RP5-1039K5.16->chr22:38428172-38430235:-,BAIAP2L2->BAI1_associated_protein_2_like_2,chr22:38480896-38506677:-	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	SPARC--GLRA1	2	0	SPARC	5825	chr5:151054173:-	GLRA1	22573	chr5:151239569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,GLRA1->chr5:151202074-151304403:-,glycine_receptor_alpha_1	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	STAT5B--TYK2	2	0	STAT5B	1460	chr17:40428266:-	TYK2	23370	chr19:10490365:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,TYK2->chr19:10461209-10491352:-,tyrosine_kinase_2	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	VPS37B--ABCB9	2	0	VPS37B	1493	chr12:123380499:-	ABCB9	30301	chr12:123430769:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:-:[24507],VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,ABCB9->ATP_binding_cassette_subfamily_B_member_9,chr12:123405498-123466196:-	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	ZC3H13--LCP1	2	0	ZC3H13	1828	chr13:46626067:-	LCP1	39147	chr13:46733821:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:-:[73161],ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	2	0	TRUE	ACH-000465
SKMEL1_SKIN	ZBTB26--AGAP2	1	2	ZBTB26	1437	chr9:125693343:-	AGAP2	13231	chr12:58129210:-	ONLY_REF_SPLICE	NO	1	4	0.75	0.43	0.0097	0.0194	ZBTB26->chr9:125677845-125693779:-,zinc_finger_and_BTB_domain_containing_26,AGAP2->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_2,Oncogene{Bushman},chr12:58118980-58135940:-	SKMEL1_SKIN	0.43	0.75	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	MEIS1--AC092669.2	1	1	MEIS1	14433	chr2:66691352:+	AC092669.2	30797	chr2:66554794:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0097	0.0097	MEIS1->Meis_homeobox_1,Oncogene{Bushman},chr2:66660584-66801001:+,AC092669.2->chr2:66554481-66555973:+	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	PRR4--RP11-575F12.1	1	1	PRR4	2363	chr12:11273609:-	RP11-575F12.1	27951	chr12:127485195:-	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0097	0.0097	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),RP11-575F12.1->chr12:127399766-127544946:-	SKMEL1_SKIN	0.11	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	RP11-96H19.1--NELL2	1	1	RP11-96H19.1	2709	chr12:46781755:+	NELL2	12625	chr12:45269683:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0097	0.0097	RP11-96H19.1->chr12:46777462-46850051:+,NELL2->chr12:44902058-45315631:-,neural_EGFL_like_2	SKMEL1_SKIN	0.5	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	VPRBP--DOCK3	1	1	VPRBP	8573	chr3:51474986:-	DOCK3	62301	chr3:51367569:+	ONLY_REF_SPLICE	YES	5	3	0.29	0.4	0.0097	0.0097	LOCAL_INVERSION:-:+:[11669],VPRBP->Vpr_(HIV-1)_binding_protein,chr3:51433298-51534010:-,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	SKMEL1_SKIN	0.29	0.4	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
NCIH520_LUNG	RCAN1--RUNX1	1563	325	RCAN1	1383	chr21:35987059:-	RUNX1	52846	chr21:36171759:-	ONLY_REF_SPLICE	YES	74	100	0.96	0.95	14.2551	2.9641	RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	NCIH520_LUNG	0.95	0.96	17.2192	TRUE	0	1	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	RCAN1--RUNX1	652	623	RCAN1	5614	chr21:35898961:-	RUNX1	52846	chr21:36171759:-	ONLY_REF_SPLICE	YES	98	100	0.93	0.93	5.9464	5.682	RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	NCIH520_LUNG	0.93	0.93	11.6284	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	348	146	NKD1	10610	chr16:50667260:+	ADCY7	30123	chr16:50334630:+	INCL_NON_REF_SPLICE	YES	2016	13	0.2	0.97	3.1739	1.3316	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0.2	0.97	4.5055	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	KDM6A--AL592528.1	192	62	KDM6A	1477	chrX:44733233:+	AL592528.1	35789	chr21:47252572:-	ONLY_REF_SPLICE	YES	1	0	1	1	1.7511	0.5655	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,AL592528.1->chr21:47247875-47256333:-	NCIH520_LUNG	1	1	2.3166	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	124	147	NKD1	10610	chr16:50667260:+	ADCY7	30119	chr16:50334626:+	INCL_NON_REF_SPLICE	YES	2016	11	0.12	0.96	1.1309	1.3407	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0.12	0.96	2.4716	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	RCAN1--RUNX1	46	338	RCAN1	1865	chr21:35986577:-	RUNX1	52846	chr21:36171759:-	ONLY_REF_SPLICE	YES	90	100	0.81	0.79	0.4195	3.0827	RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	NCIH520_LUNG	0.79	0.81	3.5022	TRUE	0	1	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	ZNF252P--ATAD2	127	3	ZNF252P	1079	chr8:146228203:-	ATAD2	37596	chr8:124351686:-	ONLY_REF_SPLICE	YES	0	149	1	0.47	1.1583	0.0274	ZNF252P->chr8:146198975-146228281:-,zinc_finger_protein_252,_pseudogene,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	NCIH520_LUNG	0.47	1	1.1857	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	RCAN1--RUNX1	7	338	RCAN1	2356	chr21:35986086:-	RUNX1	52846	chr21:36171759:-	ONLY_REF_SPLICE	YES	90	100	0.79	0.78	0.0638	3.0827	RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	NCIH520_LUNG	0.78	0.79	3.1465	TRUE	0	1	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	SUPV3L1--VPS26A	79	46	SUPV3L1	17116	chr10:70967697:+	VPS26A	28035	chr10:70922162:+	ONLY_REF_SPLICE	YES	71	184	0.64	0.4	0.7205	0.4195	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[7371],SUPV3L1->Suv3_like_RNA_helicase,chr10:70939988-70968855:+,VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+	NCIH520_LUNG	0.4	0.64	1.14	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	ATRX--MAGT1	76	14	ATRX	20367	chrX:76907604:-	MAGT1	57508	chrX:77086392:-	ONLY_REF_SPLICE	YES	53	144	0.63	0.38	0.6931	0.1277	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[40159],ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,MAGT1->chrX:77081861-77151090:-,magnesium_transporter_1	NCIH520_LUNG	0.38	0.63	0.8208	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	25	152	NKD1	10669	chr16:50667319:+	ADCY7	30119	chr16:50334626:+	INCL_NON_REF_SPLICE	YES	2106	11	0.08	0.94	0.228	1.3863	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0.08	0.94	1.6143	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	PAK1--TENM4	58	16	PAK1	2084	chr11:77184597:-	TENM4	49607	chr11:78614568:-	ONLY_REF_SPLICE	YES	103	0	0.42	1	0.529	0.1459	PAK1->Oncogene{Bushman},chr11:77032752-77185680:-,p21_(RAC1)_activated_kinase_1,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	NCIH520_LUNG	0.42	1	0.6749	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	51	31	NKD1	9669	chr16:50666319:+	ADCY7	30119	chr16:50334626:+	ONLY_REF_SPLICE	YES	1735	11	0.05	0.88	0.4651	0.2827	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0.05	0.88	0.7478	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	3	154	NKD1	11100	chr16:50667750:+	ADCY7	30119	chr16:50334626:+	INCL_NON_REF_SPLICE	YES	695	11	0.18	0.93	0.0274	1.4045	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0.18	0.93	1.4319	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	3	151	NKD1	10669	chr16:50667319:+	ADCY7	30123	chr16:50334630:+	INCL_NON_REF_SPLICE	YES	2106	13	0.07	0.92	0.0274	1.3772	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0.07	0.92	1.4046	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	DOK6--CCDC102B	34	7	DOK6	1256	chr18:67068546:+	CCDC102B	38090	chr18:66541906:+	ONLY_REF_SPLICE	YES	6	0	0.87	1	0.3101	0.0638	{Klijn_CCL:Lung=1},DOK6->chr18:67068291-67516323:+,docking_protein_6,CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B	NCIH520_LUNG	0.87	1	0.3739	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	BPTF--ARSG	32	9	BPTF	3637	chr17:65850878:+	ARSG	51077	chr17:66303084:+	ONLY_REF_SPLICE	YES	23	0	0.64	1	0.2919	0.0821	BPTF->bromodomain_PHD_finger_transcription_factor,chr17:65821640-65980494:+,ARSG->arylsulfatase_G,chr17:66255323-66418872:+	NCIH520_LUNG	0.64	1	0.374	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	KMT2E--LETM2	20	12	KMT2E	16085	chr7:104722244:+	LETM2	42440	chr8:38260043:+	ONLY_REF_SPLICE	YES	29	1	0.52	0.97	0.1824	0.1094	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LETM2->chr8:38243725-38267045:+,leucine_zipper_and_EF-hand_containing_transmembrane_protein_2	NCIH520_LUNG	0.52	0.97	0.2918	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	RCAN1--RUNX1	9	27	RCAN1	1383	chr21:35987059:-	RUNX1	54008	chr21:36164907:-	ONLY_REF_SPLICE	YES	74	392	0.33	0.08	0.0821	0.2462	RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	NCIH520_LUNG	0.08	0.33	0.3283	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	SUPV3L1--VPS26A	3	51	SUPV3L1	17854	chr10:70968435:+	VPS26A	28035	chr10:70922162:+	INCL_NON_REF_SPLICE	YES	77	184	0.41	0.23	0.0274	0.4651	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[7371],SUPV3L1->Suv3_like_RNA_helicase,chr10:70939988-70968855:+,VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+	NCIH520_LUNG	0.23	0.41	0.4925	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	GTF2F2--LINC00407	14	2	GTF2F2	2281	chr13:45710941:+	LINC00407	18011	chr13:45275056:+	ONLY_REF_SPLICE	YES	98	0	0.14	1	0.1277	0.0182	GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2,LINC00407->chr13:45225948-45275152:+,long_intergenic_non-protein_coding_RNA_407	NCIH520_LUNG	0.14	1	0.1459	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	WDR83OS--FBXW9	10	13	WDR83OS	2294	chr19:12780877:-	FBXW9	11447	chr19:12800924:-	INCL_NON_REF_SPLICE	YES	28	26	0.45	0.47	0.0912	0.1186	LOCAL_REARRANGEMENT:-:[16697],WDR83OS->WD_repeat_domain_83_opposite_strand,chr19:12778885-12782170:-,FBXW9->F-box_and_WD_repeat_domain_containing_9,chr19:12798867-12807457:-	NCIH520_LUNG	0.45	0.47	0.2098	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	ATRX--MAGT1	6	15	ATRX	20367	chrX:76907604:-	MAGT1	56433	chrX:77096817:-	ONLY_REF_SPLICE	YES	53	136	0.28	0.13	0.0547	0.1368	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[40159],ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,MAGT1->chrX:77081861-77151090:-,magnesium_transporter_1	NCIH520_LUNG	0.13	0.28	0.1915	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NEIL1--PPCDC	9	1	NEIL1	2045	chr15:75640340:+	PPCDC	15153	chr15:75336727:+	ONLY_REF_SPLICE	YES	2	64	0.83	0.14	0.0821	0.0091	NEIL1->Oncogene{Bushman},chr15:75639296-75647592:+,nei_like_DNA_glycosylase_1,PPCDC->chr15:75315896-75409803:+,phosphopantothenoylcysteine_decarboxylase	NCIH520_LUNG	0.14	0.83	0.0912	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	TIAM1--SCAF4	8	1	TIAM1	5426	chr21:32711558:-	SCAF4	42072	chr21:33078670:-	ONLY_REF_SPLICE	YES	17	23	0.35	0.28	0.073	0.0091	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-	NCIH520_LUNG	0.28	0.35	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	PLCB4--PLCB1	7	0	PLCB4	8912	chr20:9319684:+	PLCB1	86832	chr20:8862269:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0638	0	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	NCIH520_LUNG	1	1	0.0638	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	MACF1--WNT9A	6	3	MACF1	11842	chr1:39715775:+	WNT9A	126349	chr1:228113220:-	ONLY_REF_SPLICE	YES	40	1	0.18	0.9	0.0547	0.0274	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,WNT9A->Wnt_family_member_9A,chr1:228106357-228135599:-	NCIH520_LUNG	0.18	0.9	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	PAK1--TENM4	2	16	PAK1	2227	chr11:77184454:-	TENM4	49607	chr11:78614568:-	ONLY_REF_SPLICE	NO	119	0	0.13	1	0.0182	0.1459	PAK1->Oncogene{Bushman},chr11:77032752-77185680:-,p21_(RAC1)_activated_kinase_1,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	NCIH520_LUNG	0.13	1	0.1641	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	ZNF252P--ATAD2	5	4	ZNF252P	1111	chr8:146228171:-	ATAD2	37596	chr8:124351686:-	INCL_NON_REF_SPLICE	YES	2	149	0.82	0.06	0.0456	0.0365	ZNF252P->chr8:146198975-146228281:-,zinc_finger_protein_252,_pseudogene,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	NCIH520_LUNG	0.06	0.82	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NRXN3--ACAA2	5	2	NRXN3	24693	chr14:79454484:+	ACAA2	51138	chr18:47329223:-	ONLY_REF_SPLICE	YES	36	118	0.16	0.06	0.0456	0.0182	NRXN3->chr14:78708734-80330762:+,neurexin_3,ACAA2->acetyl-CoA_acyltransferase_2,chr18:47309869-47340330:-	NCIH520_LUNG	0.06	0.16	0.0638	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NUTM2A-AS1--SFTPA1	5	1	NUTM2A-AS1	14159	chr10:89048199:-	SFTPA1	26206	chr10:81371559:+	ONLY_REF_SPLICE	YES	35	0	0.15	1	0.0456	0.0091	NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,SFTPA1->chr10:81370695-81375196:+,surfactant_protein_A1	NCIH520_LUNG	0.15	1	0.0547	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	AMFR--RP11-327F22.4	4	0	AMFR	9965	chr16:56435645:-	RP11-327F22.4	25321	chr16:50818100:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	AMFR->Oncogene{Bushman},autocrine_motility_factor_receptor,chr16:56395364-56459450:-,RP11-327F22.4->chr16:50817770-50837249:-	NCIH520_LUNG	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	DPYSL3--JAKMIP2	4	0	DPYSL3	8449	chr5:146795272:-	JAKMIP2	48977	chr5:146971249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[78371],DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3,JAKMIP2->chr5:146967990-147162338:-,janus_kinase_and_microtubule_interacting_protein_2	NCIH520_LUNG	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NKD1--CNEP1R1	4	0	NKD1	2226	chr16:50583466:+	CNEP1R1	18984	chr16:50060307:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,CNEP1R1->CTD_nuclear_envelope_phosphatase_1_regulatory_subunit_1,chr16:50058321-50070999:+	NCIH520_LUNG	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	RCC1--FAM192A	4	0	RCC1	2175	chr1:28834672:+	FAM192A	24869	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	NCIH520_LUNG	1	1	0.0365	TRUE	0	3	0	3	0	TRUE	ACH-000395
NCIH520_LUNG	DPYSL3--JAKMIP2	3	0	DPYSL3	5010	chr5:146833112:-	JAKMIP2	48977	chr5:146971249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[78371],DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3,JAKMIP2->chr5:146967990-147162338:-,janus_kinase_and_microtubule_interacting_protein_2	NCIH520_LUNG	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	FARS2--CDYL	3	0	FARS2	1617	chr6:5261893:+	CDYL	23182	chr6:4891947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,CDYL->chr6:4706393-4955785:+,chromodomain_protein,_Y-like	NCIH520_LUNG	1	1	0.0274	TRUE	0	1	0	2	1	TRUE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	3	0	NKD1	2226	chr16:50583466:+	ADCY7	44160	chr16:50350441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NPM1P24--SET	3	0	NPM1P24	1535	chr10:74677758:-	SET	7622	chr9:131451517:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH520_LUNG	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NRXN3--SET	3	0	NRXN3	24693	chr14:79454484:+	SET	52425	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},NRXN3->chr14:78708734-80330762:+,neurexin_3,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH520_LUNG	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	DANCR--ACAA2	2	0	DANCR	1530	chr4:53579126:+	ACAA2	10666	chr18:47329223:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ACAA2->acetyl-CoA_acyltransferase_2,chr18:47309869-47340330:-	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	30054	chr13:114201615:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	NCIH520_LUNG	1	1	0.0182	TRUE	0	3	0	3	3	TRUE	ACH-000395
NCIH520_LUNG	DPYSL3--JAKMIP2	2	0	DPYSL3	1579	chr5:146889041:-	JAKMIP2	48977	chr5:146971249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[78371],DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3,JAKMIP2->chr5:146967990-147162338:-,janus_kinase_and_microtubule_interacting_protein_2	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	MGA--AC159540.1	2	0	MGA	13640	chr15:42005694:+	AC159540.1	46366	chr2:98089511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,AC159540.1->chr2:98081083-98099107:-	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NCK1--MLLT4-AS1	2	0	NCK1	4708	chr3:136647069:+	MLLT4-AS1	16264	chr6:168225486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,MLLT4-AS1->MLLT4_antisense_RNA_1_(head_to_head),chr6:168224556-168227389:-	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	SDF2--C5orf28	2	0	SDF2	1464	chr17:26988744:-	C5orf28	15958	chr5:43454145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	SDF2->chr17:26975374-26989207:-,stromal_cell_derived_factor_2,C5orf28->chr5:43444354-43483995:-,chromosome_5_open_reading_frame_28	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	TSPAN5--RAP1GDS1	2	0	TSPAN5	2090	chr4:99578691:-	RAP1GDS1	31645	chr4:99325628:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=4;pct=0.05%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Hippocampus=1,Thyroid=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[26506],TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	TSPAN5--RAP1GDS1	2	0	TSPAN5	5664	chr4:99428829:-	RAP1GDS1	37926	chr4:99355087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=4;pct=0.05%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Hippocampus=1,Thyroid=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[26506],TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	WBP1L--EIF4EBP2	2	0	WBP1L	1174	chr10:104503900:+	EIF4EBP2	13447	chr10:72179670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+,EIF4EBP2->chr10:72164135-72188374:+,eukaryotic_translation_initiation_factor_4E_binding_protein_2	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	KMT2E--LETM2	1	2	KMT2E	14975	chr7:104719410:+	LETM2	42440	chr8:38260043:+	ONLY_REF_SPLICE	YES	17	1	0.15	0.75	0.0091	0.0182	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LETM2->chr8:38243725-38267045:+,leucine_zipper_and_EF-hand_containing_transmembrane_protein_2	NCIH520_LUNG	0.15	0.75	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	CTD-2023M8.1--BASP1	1	1	CTD-2023M8.1	1176	chr5:18746107:-	BASP1	9745	chr5:17275317:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0091	0.0091	CTD-2023M8.1->chr5:18704542-18746282:-,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	NCIH520_LUNG	0.67	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	KMT2E--LETM2	1	1	KMT2E	13482	chr7:104717880:+	LETM2	42440	chr8:38260043:+	ONLY_REF_SPLICE	YES	32	1	0.06	0.67	0.0091	0.0091	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LETM2->chr8:38243725-38267045:+,leucine_zipper_and_EF-hand_containing_transmembrane_protein_2	NCIH520_LUNG	0.06	0.67	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
LN382_CENTRAL_NERVOUS_SYSTEM	ACSL3--ALAS1	134	147	ACSL3	1325	chr2:223725976:+	ALAS1	28305	chr3:52233226:+	ONLY_REF_SPLICE	YES	314	185	0.47	0.6	1.6008	1.7561	ACSL3->Oncogene{Bushman},acyl-CoA_synthetase_long-chain_family_member_3,chr2:223725652-223809357:+,ALAS1->5'-aminolevulinate_synthase_1,chr3:52232102-52248343:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.47	0.6	3.3569	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RIT1--ARHGEF2	90	57	RIT1	3804	chr1:155874102:-	ARHGEF2	18479	chr1:155955240:-	ONLY_REF_SPLICE	YES	140	8	0.51	0.95	1.0752	0.6809	LOCAL_REARRANGEMENT:-:[35435],RIT1->Ras-like_without_CAAX_1,chr1:155867599-155881195:-,ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.51	0.95	1.7561	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ACSL3--ALAS1	25	137	ACSL3	1325	chr2:223725976:+	ALAS1	28316	chr3:52233237:+	ONLY_REF_SPLICE	YES	314	175	0.34	0.48	0.2987	1.6367	ACSL3->Oncogene{Bushman},acyl-CoA_synthetase_long-chain_family_member_3,chr2:223725652-223809357:+,ALAS1->5'-aminolevulinate_synthase_1,chr3:52232102-52248343:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.34	0.48	1.9354	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	KIAA0319L--PYCR2	43	58	KIAA0319L	4118	chr1:36019951:-	PYCR2	34356	chr1:226111471:-	ONLY_REF_SPLICE	YES	97	385	0.51	0.21	0.5137	0.6929	KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,PYCR2->chr1:226107578-226111978:-,pyrroline-5-carboxylate_reductase_family_member_2	LN382_CENTRAL_NERVOUS_SYSTEM	0.21	0.51	1.2066	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	KIAA0319L--PYCR2	12	37	KIAA0319L	4118	chr1:36019951:-	PYCR2	35744	chr1:226110083:-	ONLY_REF_SPLICE	YES	97	440	0.34	0.1	0.1434	0.442	KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,PYCR2->chr1:226107578-226111978:-,pyrroline-5-carboxylate_reductase_family_member_2	LN382_CENTRAL_NERVOUS_SYSTEM	0.1	0.34	0.5854	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	WDFY3--MAPK10	14	19	WDFY3	3377	chr4:85818064:-	MAPK10	116971	chr4:86952584:-	ONLY_REF_SPLICE	YES	7	10	0.82	0.77	0.1673	0.227	WDFY3->WD_repeat_and_FYVE_domain_containing_3,chr4:85590704-85887544:-,MAPK10->Oncogene{Bushman},chr4:86936276-87515284:-,mitogen-activated_protein_kinase_10	LN382_CENTRAL_NERVOUS_SYSTEM	0.77	0.82	0.3943	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	COPB2--SLC37A3	13	15	COPB2	9085	chr3:139096883:-	SLC37A3	33029	chr7:140082396:-	ONLY_REF_SPLICE	YES	478	25	0.06	0.53	0.1553	0.1792	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,SLC37A3->chr7:139993493-140104233:-,solute_carrier_family_37_member_3	LN382_CENTRAL_NERVOUS_SYSTEM	0.06	0.53	0.3345	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ACSL3--ALAS1	3	41	ACSL3	1325	chr2:223725976:+	ALAS1	29536	chr3:52236523:+	ONLY_REF_SPLICE	YES	314	356	0.12	0.11	0.0358	0.4898	ACSL3->Oncogene{Bushman},acyl-CoA_synthetase_long-chain_family_member_3,chr2:223725652-223809357:+,ALAS1->5'-aminolevulinate_synthase_1,chr3:52232102-52248343:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.11	0.12	0.5256	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	STARD3--CDK12	11	1	STARD3	1167	chr17:37793484:+	CDK12	38860	chr17:37700502:+	ONLY_REF_SPLICE	YES	18	21	0.4	0.36	0.1314	0.0119	LOCAL_REARRANGEMENT:+:[72158],STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	LN382_CENTRAL_NERVOUS_SYSTEM	0.36	0.4	0.1433	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	NUBP2--RAB26	9	3	NUBP2	1136	chr16:1833037:+	RAB26	13236	chr16:2199942:+	ONLY_REF_SPLICE	YES	3	3	0.8	0.8	0.1075	0.0358	NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,RAB26->RAB26,_member_RAS_oncogene_family,chr16:2190804-2204166:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.8	0.8	0.1433	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SEPT9--RBFOX3	9	3	SEPT9	8751	chr17:75316430:+	RBFOX3	52288	chr17:77303906:-	ONLY_REF_SPLICE	YES	95	0	0.11	1	0.1075	0.0358	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RBFOX3->RNA_binding_protein,_fox-1_homolog_3,chr17:77085427-77613550:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.1433	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	NUBP2--RAB26	8	3	NUBP2	1136	chr16:1833037:+	RAB26	14786	chr16:2201570:+	ONLY_REF_SPLICE	YES	3	18	0.79	0.38	0.0956	0.0358	NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,RAB26->RAB26,_member_RAS_oncogene_family,chr16:2190804-2204166:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.38	0.79	0.1314	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RCN3--CTD-3148I10.9	7	3	RCN3	5534	chr19:50042436:+	CTD-3148I10.9	15797	chr19:49989272:+	INCL_NON_REF_SPLICE	YES	4	1	0.71	0.91	0.0836	0.0358	LOCAL_REARRANGEMENT:+:[41387],RCN3->chr19:50030875-50050219:+,reticulocalbin_3,CTD-3148I10.9->chr19:49966009-49989488:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.71	0.91	0.1194	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	AVPI1--SFRP5	7	2	AVPI1	1558	chr10:99446523:-	SFRP5	9106	chr10:99529502:-	ONLY_REF_SPLICE	YES	70	0	0.11	1	0.0836	0.0239	LOCAL_REARRANGEMENT:-:[79428],AVPI1->Oncogene{Bushman},arginine_vasopressin_induced_1,chr10:99437181-99447080:-,SFRP5->chr10:99526508-99531709:-,secreted_frizzled-related_protein_5	LN382_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.1075	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	WDFY3--MAPK10	1	20	WDFY3	4466	chr4:85800559:-	MAPK10	116971	chr4:86952584:-	ONLY_REF_SPLICE	YES	7	10	0.75	0.68	0.0119	0.2389	WDFY3->WD_repeat_and_FYVE_domain_containing_3,chr4:85590704-85887544:-,MAPK10->Oncogene{Bushman},chr4:86936276-87515284:-,mitogen-activated_protein_kinase_10	LN382_CENTRAL_NERVOUS_SYSTEM	0.68	0.75	0.2508	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ITPK1--BTBD7	5	3	ITPK1	3277	chr14:93542940:-	BTBD7	36198	chr14:93717998:-	ONLY_REF_SPLICE	YES	65	24	0.11	0.25	0.0597	0.0358	ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.11	0.25	0.0955	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ADCY9--NSMCE1	4	5	ADCY9	9269	chr16:4042147:-	NSMCE1	30036	chr16:27268902:-	ONLY_REF_SPLICE	YES	28	15	0.24	0.38	0.0478	0.0597	ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,NSMCE1->NSE1_homolog,_SMC5-SMC6_complex_component,chr16:27236312-27280115:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.24	0.38	0.1075	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	WDFY3--MAPK10	4	5	WDFY3	2277	chr4:85853423:-	MAPK10	116971	chr4:86952584:-	ONLY_REF_SPLICE	YES	4	10	0.69	0.47	0.0478	0.0597	WDFY3->WD_repeat_and_FYVE_domain_containing_3,chr4:85590704-85887544:-,MAPK10->Oncogene{Bushman},chr4:86936276-87515284:-,mitogen-activated_protein_kinase_10	LN382_CENTRAL_NERVOUS_SYSTEM	0.47	0.69	0.1075	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RIT1--ARHGEF2	1	11	RIT1	1955	chr1:155880241:-	ARHGEF2	18479	chr1:155955240:-	ONLY_REF_SPLICE	NO	258	8	0.04	0.6	0.0119	0.1314	LOCAL_REARRANGEMENT:-:[35435],RIT1->Ras-like_without_CAAX_1,chr1:155867599-155881195:-,ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.04	0.6	0.1433	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SMURF1--SH3BP4	3	0	SMURF1	1379	chr7:98741345:-	SH3BP4	45717	chr2:235963289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-,SH3BP4->SH3_domain_binding_protein_4,chr2:235860617-235964358:+	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SEPT9--RBFOX3	2	3	SEPT9	6917	chr17:75303279:+	RBFOX3	52288	chr17:77303906:-	ONLY_REF_SPLICE	YES	68	0	0.07	1	0.0239	0.0358	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RBFOX3->RNA_binding_protein,_fox-1_homolog_3,chr17:77085427-77613550:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0597	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	NUBP2--RAB26	1	6	NUBP2	2166	chr16:1834067:+	RAB26	13236	chr16:2199942:+	ONLY_REF_SPLICE	YES	10	3	0.41	0.7	0.0119	0.0717	NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,RAB26->RAB26,_member_RAS_oncogene_family,chr16:2190804-2204166:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.41	0.7	0.0836	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	40918	chr11:35006117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	2	0	7	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	2	0	COL1A1	6491	chr17:48273284:-	COL7A1	49337	chr3:48605196:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	0	0	2	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	CRIM1--FEZ2	2	0	CRIM1	8239	chr2:36669878:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	1	1	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ENAH--XPNPEP1	2	0	ENAH	15992	chr1:225695653:-	XPNPEP1	52532	chr10:111633185:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila),XPNPEP1->X-prolyl_aminopeptidase_(aminopeptidase_P)_1,_soluble,chr10:111624524-111683311:-	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	FGF2--IL21-AS1	2	0	FGF2	1645	chr4:123748507:+	IL21-AS1	22982	chr4:123609692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	FGF2->Oncogene{Bushman},chr4:123747863-123819391:+,fibroblast_growth_factor_2,IL21-AS1->IL21_antisense_RNA_1,chr4:123540138-123610311:+	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	IKBIP--SLC25A3	2	0	IKBIP	2709	chr12:99028074:-	SLC25A3	14713	chr12:98991634:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	LOCAL_INVERSION:-:+:[11237],IKBIP->IKBKB_interacting_protein,chr12:99007183-99038891:-,SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	0	0	3	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	KIAA1377--UBAP2L	2	0	KIAA1377	4776	chr11:101818873:+	UBAP2L	44161	chr1:154232424:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	KIAA1377->chr11:101785746-101871789:+,UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PRRG1--LANCL3	2	0	PRRG1	4586	chrX:37285253:+	LANCL3	17056	chrX:37514941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	PRRG1->chrX:37208528-37316548:+,proline_rich_and_Gla_domain_1,LANCL3->LanC_like_3,chrX:37430822-37543716:+	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	1	2	0	5	2	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SPIN1--S1PR3	2	0	SPIN1	1120	chr9:91003453:+	S1PR3	23488	chr9:91615969:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	SPIN1->chr9:91003334-91093609:+,spindlin_1,S1PR3->chr9:91606362-91619925:+,sphingosine-1-phosphate_receptor_3	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SUMF2--CCT6A	2	0	SUMF2	3658	chr7:56140804:+	CCT6A	20326	chr7:56127962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[13],SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	5	0	5	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	TSPAN5--ADH1C	1	1	TSPAN5	5664	chr4:99428829:-	ADH1C	22642	chr4:100269003:-	ONLY_REF_SPLICE	YES	36	0	0.05	1	0.0119	0.0119	TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,ADH1C->alcohol_dehydrogenase_1C_(class_I),_gamma_polypeptide,chr4:100257649-100274184:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000215
ZR751_BREAST	EYA3--MST1P2	21	2	EYA3	5465	chr1:28365350:-	MST1P2	31262	chr1:16973958:+	ONLY_REF_SPLICE	YES	2	3	0.92	0.88	0.3523	0.0336	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,MST1P2->chr1:16972069-16976914:+,macrophage_stimulating_1_(hepatocyte_growth_factor-like)_pseudogene_2	ZR751_BREAST	0.88	0.92	0.3859	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	SREK1--HOMER1	13	4	SREK1	12394	chr5:65460725:+	HOMER1	32540	chr5:78752841:-	ONLY_REF_SPLICE	YES	16	1	0.52	0.94	0.2181	0.0671	{Klijn_CCL:Breast=1},SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1,HOMER1->chr5:78668459-78810040:-,homer_scaffolding_protein_1	ZR751_BREAST	0.52	0.94	0.2852	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	STAG3L4--TYW1	7	1	STAG3L4	2362	chr7:66771070:+	TYW1	22522	chr7:66548417:+	ONLY_REF_SPLICE	YES	8	3	0.5	0.73	0.1174	0.0168	LOCAL_REARRANGEMENT:+:[63107],STAG3L4->chr7:66767608-66786513:+,stromal_antigen_3-like_4_(pseudogene),TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	ZR751_BREAST	0.5	0.73	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	ESR1--CCDC170	6	4	ESR1	3373	chr6:152023140:+	CCDC170	38747	chr6:151894309:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.1007	0.0671	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	ZR751_BREAST	0.91	1	0.1678	TRUE	0	1	0	3	1	TRUE	ACH-000097
ZR751_BREAST	MINOS1--RCC2	7	0	MINOS1	1127	chr1:19923603:+	RCC2	19194	chr1:17755695:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1174	0	MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,RCC2->Oncogene{Bushman},chr1:17733256-17766220:-,regulator_of_chromosome_condensation_2	ZR751_BREAST	1	1	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	CHD6--BPI	6	0	CHD6	1155	chr20:40246979:-	BPI	73744	chr20:36962832:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1007	0	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,BPI->bactericidal/permeability-increasing_protein,chr20:36888551-36965907:+	ZR751_BREAST	1	1	0.1007	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	COG5--SLC26A3	4	1	COG5	3910	chr7:107194730:-	SLC26A3	49308	chr7:107412553:-	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0671	0.0168	COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,SLC26A3->chr7:107405912-107443670:-,solute_carrier_family_26_member_3	ZR751_BREAST	0.33	1	0.0839	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	AFG3L2--SPIRE1	4	0	AFG3L2	1346	chr18:12376968:-	SPIRE1	31157	chr18:12546903:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[69198],AFG3L2->AFG3_like_matrix_AAA_peptidase_subunit_2,chr18:12328943-12377313:-,SPIRE1->chr18:12446511-12658133:-,spire_type_actin_nucleation_factor_1	ZR751_BREAST	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	BOP1--ARHGAP39	4	0	BOP1	4671	chr8:145500212:-	ARHGAP39	17503	chr8:145781027:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,ARHGAP39->Rho_GTPase_activating_protein_39,chr8:145754563-145911194:-	ZR751_BREAST	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	DDI2--MKNK1-AS1	4	0	DDI2	6940	chr1:15964929:+	MKNK1-AS1	28391	chr1:47023897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	DDI2->DNA_damage_inducible_1_homolog_2,chr1:15943995-15995539:+,MKNK1-AS1->MKNK1_antisense_RNA_1,chr1:47004368-47035927:+	ZR751_BREAST	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	EXOSC10--KPNA6	2	5	EXOSC10	13242	chr1:11136899:-	KPNA6	28217	chr1:32622454:+	ONLY_REF_SPLICE	YES	14	2	0.33	0.78	0.0336	0.0839	{Klijn_CCL:Breast=1},EXOSC10->chr1:11126675-11159938:-,exosome_component_10,KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6	ZR751_BREAST	0.33	0.78	0.1175	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	KIF18B--CDK5RAP3	3	0	KIF18B	10526	chr17:43003724:-	CDK5RAP3	25255	chr17:46057981:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	KIF18B->chr17:43002077-43025082:-,kinesin_family_member_18B,CDK5RAP3->CDK5_regulatory_subunit_associated_protein_3,chr17:46045176-46059140:+	ZR751_BREAST	1	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	SRPR--HMGB3	3	0	SRPR	3374	chr11:126136666:-	HMGB3	17327	chrX:150158662:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	SRPR->chr11:126132814-126139039:-,HMGB3->chrX:150148982-150159248:+,high_mobility_group_box_3	ZR751_BREAST	1	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	SLC2A1--CAPZB	2	1	SLC2A1	1226	chr1:43424305:-	CAPZB	17847	chr1:19746244:-	ONLY_REF_SPLICE	YES	15	10	0.17	0.23	0.0336	0.0168	{Klijn_CCL:Breast=1},SLC2A1->chr1:43391052-43424530:-,solute_carrier_family_2_member_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	ZR751_BREAST	0.17	0.23	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	AC002985.3--ZER1	2	0	AC002985.3	3518	chr19:19042134:-	ZER1	17068	chr9:131505024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	AC002985.3->chr19:19017822-19045206:-,ZER1->chr9:131492065-131534693:-,zyg-11_related_cell_cycle_regulator	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	DPM1--CLEC2D	2	0	DPM1	6776	chr20:49557402:-	CLEC2D	17412	chr12:9833519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	DPM1->chr20:49551404-49575092:-,dolichyl-phosphate_mannosyltransferase_polypeptide_1,_catalytic_subunit,CLEC2D->C-type_lectin_domain_family_2_member_D,chr12:9817565-9848413:+	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	FHOD1--YTHDC2	2	0	FHOD1	1449	chr16:67281113:-	YTHDC2	44628	chr5:112929179:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	FHOD1->chr16:67263290-67281561:-,formin_homology_2_domain_containing_1,YTHDC2->YTH_domain_containing_2,chr5:112849380-112930982:+	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	HELZ--RFWD2	2	0	HELZ	4266	chr17:65235549:-	RFWD2	53933	chr1:176153828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	HELZ->chr17:65066554-65242105:-,helicase_with_zinc_finger,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	KIAA1143--RAB25	2	0	KIAA1143	3192	chr3:44794837:-	RAB25	14643	chr1:156038061:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	KIAA1143->KIAA1143,chr3:44779153-44803154:-,RAB25->RAB25,_member_RAS_oncogene_family,chr1:156030951-156040295:+	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	QARS--VPS29	2	0	QARS	7236	chr3:49136318:-	VPS29	13169	chr12:110939913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	QARS->chr3:49133365-49142553:-,glutaminyl-tRNA_synthetase,VPS29->VPS29_retromer_complex_component,chr12:110928902-110939922:-	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	RNF213--SMARCD2	2	0	RNF213	40318	chr17:78324196:+	SMARCD2	85906	chr17:61912927:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,SMARCD2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_d,_member_2,chr17:61909444-61920425:-	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	RP11-357C3.3--ARHGEF9	2	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	22895	chrX:62926329:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	ZR751_BREAST	1	1	0.0336	TRUE	0	3	0	3	0	TRUE	ACH-000097
ZR751_BREAST	SESTD1--SEC63	2	0	SESTD1	15349	chr2:179989091:-	SEC63	53191	chr6:108204350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	SESTD1->SEC14_and_spectrin_domain_containing_1,chr2:179966419-180129517:-,SEC63->SEC63_homolog,_protein_translocation_regulator,chr6:108188960-108279393:-	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	SRRM2--RPL11	2	0	SRRM2	7483	chr16:2810500:+	RPL11	26495	chr1:24022288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	SRRM2->chr16:2802330-2822539:+,serine/arginine_repetitive_matrix_2,RPL11->chr1:24018269-24022915:+,ribosomal_protein_L11	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	THRAP3--CSMD2	2	0	THRAP3	1090	chr1:36690106:+	CSMD2	22025	chr1:34554794:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,CSMD2->CUB_and_Sushi_multiple_domains_2,chr1:33979609-34631443:-	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	ZMIZ2--C9orf3	2	0	ZMIZ2	8754	chr7:44800192:+	C9orf3	57832	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	ZMIZ2->chr7:44788180-44809477:+,zinc_finger_MIZ-type_containing_2,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	HOMER1--SREK1	1	3	HOMER1	2448	chr5:78808593:-	SREK1	34325	chr5:65465879:+	ONLY_REF_SPLICE	YES	1	15	0.8	0.21	0.0168	0.0503	{Klijn_CCL:Breast=1},HOMER1->chr5:78668459-78810040:-,homer_scaffolding_protein_1,SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1	ZR751_BREAST	0.21	0.8	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	STAG3L4--TYW1	1	1	STAG3L4	1265	chr7:66767872:+	TYW1	22522	chr7:66548417:+	ONLY_REF_SPLICE	YES	3	3	0.4	0.4	0.0168	0.0168	LOCAL_REARRANGEMENT:+:[63107],STAG3L4->chr7:66767608-66786513:+,stromal_antigen_3-like_4_(pseudogene),TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	ZR751_BREAST	0.4	0.4	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	ZNF232--SCIMP	1	1	ZNF232	5359	chr17:5012221:-	SCIMP	13807	chr17:5118293:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0168	0.0168	LOCAL_REARRANGEMENT:-:[85845],ZNF232->chr17:5008836-5026411:-,zinc_finger_protein_232,SCIMP->SLP_adaptor_and_CSK_interacting_membrane_protein,chr17:5112256-5138155:-	ZR751_BREAST	0.33	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
HS281T_FIBROBLAST	VIM--COL1A2	20	0	VIM	2175	chr10:17271432:+	COL1A2	16093	chr7:94029518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.217	0	GTEx&tcga_normals:5/3694=0.14%,VIM->chr10:17270258-17279592:+,vimentin,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS281T_FIBROBLAST	1	1	0.217	TRUE	0	0	0	1	0	TRUE	ACH-000083
HS281T_FIBROBLAST	SERPINE1--CCDC80	19	0	SERPINE1	9721	chr7:100781638:+	CCDC80	16674	chr3:112359515:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2062	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,CCDC80->chr3:112323407-112368377:-,coiled-coil_domain_containing_80	HS281T_FIBROBLAST	1	1	0.2062	TRUE	0	0	0	1	0	TRUE	ACH-000083
HS281T_FIBROBLAST	VIM--TPM2	7	0	VIM	2156	chr10:17271413:+	TPM2	13400	chr9:35689822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.076	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS281T_FIBROBLAST	1	1	0.076	TRUE	0	0	0	8	0	TRUE	ACH-000083
HS281T_FIBROBLAST	CTGF--MT2A	5	0	CTGF	1166	chr6:132272348:-	MT2A	7582	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS281T_FIBROBLAST	1	1	0.0543	TRUE	0	0	0	3	0	TRUE	ACH-000083
HS281T_FIBROBLAST	VIM--TMSB4X	5	0	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS281T_FIBROBLAST	1	1	0.0543	TRUE	0	0	0	15	0	TRUE	ACH-000083
HS281T_FIBROBLAST	VIM--TPM2	5	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS281T_FIBROBLAST	1	1	0.0543	TRUE	0	0	0	8	0	TRUE	ACH-000083
HS281T_FIBROBLAST	CTGF--ACTB	3	0	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS281T_FIBROBLAST	1	1	0.0326	TRUE	0	0	0	9	0	TRUE	ACH-000083
HS281T_FIBROBLAST	VIM--TMSB4X	3	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS281T_FIBROBLAST	1	1	0.0326	TRUE	0	0	0	15	0	TRUE	ACH-000083
HS281T_FIBROBLAST	VIM--TPM2	3	0	VIM	2476	chr10:17271733:+	TPM2	15355	chr9:35685502:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS281T_FIBROBLAST	1	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000083
HS281T_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13337	chr9:35689885:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS281T_FIBROBLAST	1	1	0.0326	TRUE	0	0	0	8	0	TRUE	ACH-000083
HS281T_FIBROBLAST	VIM--TPM2	3	0	VIM	2524	chr10:17271781:+	TPM2	15403	chr9:35685454:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS281T_FIBROBLAST	1	1	0.0326	TRUE	0	0	0	2	0	TRUE	ACH-000083
HS281T_FIBROBLAST	TBC1D15--ZCWPW1	2	0	TBC1D15	15680	chr12:72291721:+	ZCWPW1	37460	chr7:100013720:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TBC1D15->TBC1_domain_family_member_15,chr12:72233487-72320629:+,ZCWPW1->chr7:99998449-100026615:-,zinc_finger_CW-type_and_PWWP_domain_containing_1	HS281T_FIBROBLAST	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000083
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	252	107	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	44	100	0.89	0.78	2.0143	0.8553	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.89	2.8696	TRUE	0	2	1	16	2	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	4	105	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	44	95	0.71	0.53	0.032	0.8393	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.71	0.8713	TRUE	0	2	1	16	2	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF3--SYNE4	25	1	ILF3	5507	chr19:10782211:+	SYNE4	28922	chr19:36494573:-	ONLY_REF_SPLICE	YES	670	0	0.04	1	0.1998	0.008	ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SYNE4->chr19:36494209-36499695:-,spectrin_repeat_containing_nuclear_envelope_family_member_4	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.2078	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-3116E22.6--ZNF274	8	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0639	TRUE	0	0	0	13	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PABPC1--RPS28	8	0	PABPC1	2022	chr8:101734016:-	RPS28	18700	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0639	TRUE	0	0	0	6	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--GNAS	4	0	C17orf76-AS1	1593	chr17:16342728:+	GNAS	29039	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	C17orf76-AS1->chr17:16342136-16381992:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	TRUE	0	0	0	4	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF3--SYNE4	4	0	ILF3	5507	chr19:10782211:+	SYNE4	29073	chr19:36494422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SYNE4->chr19:36494209-36499695:-,spectrin_repeat_containing_nuclear_envelope_family_member_4	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFP1--ZNRF1	4	0	ZFP1	1171	chr16:75182560:+	ZNRF1	17806	chr16:75127470:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[37498],ZFP1->ZFP1_zinc_finger_protein,chr16:75182390-75206134:+,ZNRF1->chr16:75032928-75144892:+,zinc_and_ring_finger_1,_E3_ubiquitin_protein_ligase	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AHCY--NDUFV2	3	0	AHCY	10102	chr20:32878156:-	NDUFV2	16309	chr18:9102723:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-,NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX39B--EEF1A1	3	0	DDX39B	7280	chr6:31502806:-	EEF1A1	19267	chr6:74228798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP1--MGAM	3	0	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	1	0	7	1	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTB--FKBP8	2	0	ACTB	4493	chr7:5570155:-	FKBP8	12949	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_v2:{count=3;pct=0.03%;dist=Esophagus_-_Muscularis=2,Whole_Blood=1},ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	1	0	2	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--RTKN2	2	0	CHD2	6529	chr15:93444529:+	RTKN2	73632	chr10:63959620:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,RTKN2->chr10:63942794-64028466:-,rhotekin_2	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NTNG2--SETX	2	0	NTNG2	10949	chr9:135116891:+	SETX	31126	chr9:135187243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	LOCAL_INVERSION:+:-:[16822],NTNG2->chr9:135037334-135119921:+,netrin_G2,SETX->chr9:135136743-135230372:-,senataxin	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-782C8.1--MYL12B	2	0	RP11-782C8.1	1059	chr1:143119119:+	MYL12B	14169	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	RP11-782C8.1->chr1:143119061-143233417:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NBAS--FAM49A	1	1	NBAS	5992	chr2:15691617:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	42	9	0.05	0.18	0.008	0.008	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.18	0.016	TRUE	0	0	0	5	0	TRUE	ACH-000076
AU565_BREAST	TATDN1--GSDMB	1700	3	TATDN1	1434	chr8:125551266:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	1	39	1	0.98	17.7506	0.0313	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.98	1	17.7819	TRUE	0	1	0	3	1	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	525	1	TATDN1	1434	chr8:125551266:-	GSDMB	27467	chr17:38062238:-	ONLY_REF_SPLICE	YES	1	939	1	0.36	5.4818	0.0104	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.36	1	5.4922	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	485	2	TATDN1	1434	chr8:125551266:-	GSDMB	27181	chr17:38062524:-	ONLY_REF_SPLICE	YES	1	713	1	0.41	5.0641	0.0209	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.41	1	5.085	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	CYTH1--EIF3H	358	42	CYTH1	1096	chr17:76778284:-	EIF3H	28690	chr8:117768258:-	ONLY_REF_SPLICE	YES	3	0	0.99	1	3.7381	0.4385	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	AU565_BREAST	0.99	1	4.1766	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	272	39	TATDN1	1531	chr8:125551169:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	5	39	0.98	0.89	2.8401	0.4072	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.89	0.98	3.2473	TRUE	0	1	0	3	1	TRUE	ACH-000248
AU565_BREAST	CYTH1--EIF3H	129	19	CYTH1	1096	chr17:76778284:-	EIF3H	32173	chr8:117738411:-	ONLY_REF_SPLICE	YES	3	2052	0.98	0.07	1.347	0.1984	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	AU565_BREAST	0.07	0.98	1.5454	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	ANKHD1--PCDH1	118	27	ANKHD1	7029	chr5:139825560:+	PCDH1	56142	chr5:141234001:-	ONLY_REF_SPLICE	YES	148	14	0.49	0.91	1.2321	0.2819	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,PCDH1->chr5:141232938-141258811:-,protocadherin_1	AU565_BREAST	0.49	0.91	1.514	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	PTK2--TRAPPC9	82	34	PTK2	2092	chr8:142011224:-	TRAPPC9	77038	chr8:141321473:-	ONLY_REF_SPLICE	YES	13	2	0.9	0.98	0.8562	0.355	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	AU565_BREAST	0.9	0.98	1.2112	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	SUMF1--LRRFIP2	72	27	SUMF1	8817	chr3:4418014:-	LRRFIP2	40265	chr3:37170640:-	ONLY_REF_SPLICE	YES	89	49	0.53	0.67	0.7518	0.2819	{Klijn_CCL:Breast=1},SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	AU565_BREAST	0.53	0.67	1.0337	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	75	6	TATDN1	1531	chr8:125551169:-	GSDMB	27467	chr17:38062238:-	ONLY_REF_SPLICE	YES	5	939	0.94	0.08	0.7831	0.0626	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.08	0.94	0.8457	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	ACOT8--WASH3P	61	12	ACOT8	2353	chr20:44483798:-	WASH3P	13886	chr15:102506273:+	ONLY_REF_SPLICE	YES	124	3	0.37	0.96	0.6369	0.1253	ACOT8->acyl-CoA_thioesterase_8,chr20:44470360-44486045:-,WASH3P->WAS_protein_family_homolog_3_pseudogene,chr15:102501356-102516768:+	AU565_BREAST	0.37	0.96	0.7622	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	KLHDC2--SNTB1	55	19	KLHDC2	9999	chr14:50249312:+	SNTB1	23424	chr8:121561198:-	ONLY_REF_SPLICE	YES	159	106	0.32	0.41	0.5743	0.1984	KLHDC2->chr14:50234326-50249909:+,kelch_domain_containing_2,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	AU565_BREAST	0.32	0.41	0.7727	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	NCOA2--CALB1	53	19	NCOA2	1106	chr8:71315935:-	CALB1	39758	chr8:91094330:-	ONLY_REF_SPLICE	YES	4	8	0.95	0.9	0.5534	0.1984	NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,CALB1->calbindin_1,chr8:91070836-91107703:-	AU565_BREAST	0.9	0.95	0.7518	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	52	14	TATDN1	1531	chr8:125551169:-	GSDMB	27181	chr17:38062524:-	ONLY_REF_SPLICE	YES	5	713	0.93	0.08	0.543	0.1462	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.08	0.93	0.6892	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	FOXK2--NARF	44	4	FOXK2	15124	chr17:80554067:+	NARF	30519	chr17:80426640:+	ONLY_REF_SPLICE	YES	103	82	0.32	0.37	0.4594	0.0418	LOCAL_REARRANGEMENT:+:[29176],FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor	AU565_BREAST	0.32	0.37	0.5012	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	CYTH1--EIF3H	36	32	CYTH1	1096	chr17:76778284:-	EIF3H	28912	chr8:117768036:-	ONLY_REF_SPLICE	YES	3	2	0.96	0.97	0.3759	0.3341	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	AU565_BREAST	0.96	0.97	0.71	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TAF2--COLEC10	33	9	TAF2	9798	chr8:120807772:-	COLEC10	41258	chr8:120114587:+	ONLY_REF_SPLICE	YES	90	2	0.32	0.95	0.3446	0.094	TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	AU565_BREAST	0.32	0.95	0.4386	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	PREX1--CPNE1	31	11	PREX1	2314	chr20:47364346:-	CPNE1	53305	chr20:34215335:-	ONLY_REF_SPLICE	YES	65	145	0.39	0.22	0.3237	0.1149	GTEx&tcga_normals:1/3694=0.03%,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,CPNE1->chr20:34213953-34252878:-,copine_1	AU565_BREAST	0.22	0.39	0.4386	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	DHX35--ITCH	30	12	DHX35	2243	chr20:37597857:+	ITCH	30373	chr20:32957200:+	ONLY_REF_SPLICE	YES	19	2	0.69	0.95	0.3132	0.1253	DHX35->DEAH-box_helicase_35,chr20:37590942-37668366:+,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	AU565_BREAST	0.69	0.95	0.4385	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	30	2	TATDN1	1434	chr8:125551266:-	GSDMB	26465	chr17:38063240:-	ONLY_REF_SPLICE	YES	1	708	0.97	0.04	0.3132	0.0209	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.04	0.97	0.3341	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TBC1D31--ZNF704	25	15	TBC1D31	8244	chr8:124096580:+	ZNF704	36178	chr8:81733850:-	ONLY_REF_SPLICE	YES	100	88	0.29	0.31	0.261	0.1566	TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+,ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704	AU565_BREAST	0.29	0.31	0.4176	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	PTK2--TRAPPC9	17	40	PTK2	5802	chr8:141958765:-	TRAPPC9	77038	chr8:141321473:-	ONLY_REF_SPLICE	YES	17	2	0.77	0.97	0.1775	0.4177	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	AU565_BREAST	0.77	0.97	0.5952	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	ATAD5--TLK2	24	8	ATAD5	20714	chr17:29206505:+	TLK2	48337	chr17:60650576:+	ONLY_REF_SPLICE	YES	8	30	0.8	0.52	0.2506	0.0835	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2	AU565_BREAST	0.52	0.8	0.3341	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TRIO--FBXL7	20	7	TRIO	38970	chr5:14420130:+	FBXL7	77700	chr5:15616092:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.2088	0.0731	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+	AU565_BREAST	0.96	1	0.2819	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	RARA--PKIA	20	2	RARA	1095	chr17:38465538:+	PKIA	21989	chr8:79485046:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.2088	0.0209	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,PKIA->chr8:79428374-79517502:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_alpha	AU565_BREAST	0.96	1	0.2297	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	SLC45A4--RP11-89M16.1	20	1	SLC45A4	2851	chr8:142264088:-	RP11-89M16.1	25605	chr8:129440630:-	ONLY_REF_SPLICE	YES	7	0	0.75	1	0.2088	0.0104	SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4,RP11-89M16.1->chr8:129417515-129576925:-	AU565_BREAST	0.75	1	0.2192	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	SAMD12--MRPL13	12	27	SAMD12	3503	chr8:119452071:-	MRPL13	22212	chr8:121455548:-	ONLY_REF_SPLICE	YES	31	41	0.56	0.49	0.1253	0.2819	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	AU565_BREAST	0.49	0.56	0.4072	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	PVT1--LINC00536	13	14	PVT1	20335	chr8:129082518:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	11	1	0.71	0.96	0.1357	0.1462	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	AU565_BREAST	0.71	0.96	0.2819	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	PBRM1--WDR82	14	3	PBRM1	6967	chr3:52702514:-	WDR82	48674	chr3:52304825:-	ONLY_REF_SPLICE	YES	17	23	0.5	0.42	0.1462	0.0313	PBRM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:52579368-52719933:-,polybromo_1,WDR82->Oncogene{Bushman},WD_repeat_domain_82,chr3:52288437-52322036:-	AU565_BREAST	0.42	0.5	0.1775	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	SAMD12--MRPL13	8	27	SAMD12	3508	chr8:119452066:-	MRPL13	22212	chr8:121455548:-	INCL_NON_REF_SPLICE	YES	34	41	0.51	0.46	0.0835	0.2819	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	AU565_BREAST	0.46	0.51	0.3654	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	VSTM2L--CTNNBL1	13	6	VSTM2L	3596	chr20:36561991:+	CTNNBL1	32009	chr20:36488301:+	ONLY_REF_SPLICE	YES	92	96	0.17	0.17	0.1357	0.0626	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[30968],VSTM2L->V-set_and_transmembrane_domain_containing_2_like,chr20:36531499-36573752:+,CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+	AU565_BREAST	0.17	0.17	0.1983	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	9	21	TATDN1	1531	chr8:125551169:-	GSDMB	24410	chr17:38065295:-	ONLY_REF_SPLICE	YES	5	385	0.86	0.07	0.094	0.2193	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.07	0.86	0.3133	TRUE	0	1	0	3	1	TRUE	ACH-000248
AU565_BREAST	SAMD12--MRPL13	10	14	SAMD12	2373	chr8:119592954:-	MRPL13	22212	chr8:121455548:-	ONLY_REF_SPLICE	YES	42	41	0.36	0.37	0.1044	0.1462	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	AU565_BREAST	0.36	0.37	0.2506	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	3	39	TATDN1	2128	chr8:125550572:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	5	39	0.89	0.52	0.0313	0.4072	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.52	0.89	0.4385	TRUE	0	1	0	3	1	TRUE	ACH-000248
AU565_BREAST	PVT1--LINC00536	10	10	PVT1	18060	chr8:129022690:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	13	1	0.61	0.95	0.1044	0.1044	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	AU565_BREAST	0.61	0.95	0.2088	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	PREX1--CPNE1	11	3	PREX1	2314	chr20:47364346:-	CPNE1	53915	chr20:34214725:-	ONLY_REF_SPLICE	YES	65	180	0.18	0.07	0.1149	0.0313	GTEx&tcga_normals:1/3694=0.03%,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,CPNE1->chr20:34213953-34252878:-,copine_1	AU565_BREAST	0.07	0.18	0.1462	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	PTK2--TRAPPC9	2	34	PTK2	2337	chr8:142010979:-	TRAPPC9	77038	chr8:141321473:-	ONLY_REF_SPLICE	YES	20	2	0.64	0.95	0.0209	0.355	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	AU565_BREAST	0.64	0.95	0.3759	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	MTSS1--RP11-941H19.3	9	3	MTSS1	12346	chr8:125592792:-	RP11-941H19.3	31995	chr8:81201052:+	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.094	0.0313	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-941H19.3->chr8:81178389-81252075:+	AU565_BREAST	0.75	1	0.1253	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	CTC-559E9.6--MTSS1	9	1	CTC-559E9.6	1393	chr19:19887803:+	MTSS1	18871	chr8:125603476:-	ONLY_REF_SPLICE	YES	0	5	1	0.67	0.094	0.0104	CTC-559E9.6->chr19:19887411-19945736:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	AU565_BREAST	0.67	1	0.1044	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	SUMF1--LRRFIP2	5	13	SUMF1	7757	chr3:4452549:-	LRRFIP2	40265	chr3:37170640:-	ONLY_REF_SPLICE	YES	92	49	0.16	0.27	0.0522	0.1357	{Klijn_CCL:Breast=1},SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	AU565_BREAST	0.16	0.27	0.1879	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	ANKHD1--PCDH1	1	27	ANKHD1	7029	chr5:139825560:+	PCDH1	55103	chr5:141235827:-	ONLY_REF_SPLICE	NO	148	14	0.16	0.67	0.0104	0.2819	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,PCDH1->chr5:141232938-141258811:-,protocadherin_1	AU565_BREAST	0.16	0.67	0.2923	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	CTC-559E9.6--MTSS1	6	3	CTC-559E9.6	4541	chr19:19900630:+	MTSS1	18871	chr8:125603476:-	ONLY_REF_SPLICE	YES	0	5	1	0.64	0.0626	0.0313	CTC-559E9.6->chr19:19887411-19945736:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	AU565_BREAST	0.64	1	0.0939	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	PVT1--LINC00536	4	8	PVT1	13955	chr8:129001537:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	14	1	0.46	0.92	0.0418	0.0835	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	AU565_BREAST	0.46	0.92	0.1253	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	PVT1--LINC00536	2	16	PVT1	20424	chr8:129082607:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	11	1	0.62	0.95	0.0209	0.1671	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	AU565_BREAST	0.62	0.95	0.188	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	MTSS1--RP11-941H19.3	5	3	MTSS1	11334	chr8:125597328:-	RP11-941H19.3	31995	chr8:81201052:+	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0522	0.0313	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-941H19.3->chr8:81178389-81252075:+	AU565_BREAST	0.67	1	0.0835	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TAF2--COLEC10	3	10	TAF2	10884	chr8:120805606:-	COLEC10	41258	chr8:120114587:+	ONLY_REF_SPLICE	YES	85	2	0.13	0.87	0.0313	0.1044	TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	AU565_BREAST	0.13	0.87	0.1357	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	RPTOR--RNF213	4	3	RPTOR	12519	chr17:78765309:+	RNF213	70443	chr17:78298830:+	ONLY_REF_SPLICE	YES	33	53	0.17	0.12	0.0418	0.0313	GTEx&tcga_normals:1/3694=0.03%,RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213	AU565_BREAST	0.12	0.17	0.0731	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	BLOC1S6--AKAP13	3	6	BLOC1S6	2907	chr15:45884474:+	AKAP13	40961	chr15:86182605:+	ONLY_REF_SPLICE	YES	53	27	0.15	0.25	0.0313	0.0626	BLOC1S6->biogenesis_of_lysosomal_organelles_complex_1_subunit_6,chr15:45879321-45908197:+,AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+	AU565_BREAST	0.15	0.25	0.0939	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	PTK2--TRAPPC9	3	6	PTK2	2092	chr8:142011224:-	TRAPPC9	79316	chr8:141310713:-	ONLY_REF_SPLICE	YES	13	24	0.41	0.27	0.0313	0.0626	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	AU565_BREAST	0.27	0.41	0.0939	TRUE	0	1	0	1	1	TRUE	ACH-000248
AU565_BREAST	RARA--PKIA	4	2	RARA	1095	chr17:38465538:+	PKIA	24171	chr8:79510593:+	ONLY_REF_SPLICE	YES	1	3	0.86	0.67	0.0418	0.0209	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,PKIA->chr8:79428374-79517502:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_alpha	AU565_BREAST	0.67	0.86	0.0627	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	BLOC1S6--AKAP13	3	5	BLOC1S6	1403	chr15:45879723:+	AKAP13	40961	chr15:86182605:+	ONLY_REF_SPLICE	YES	43	27	0.16	0.23	0.0313	0.0522	BLOC1S6->biogenesis_of_lysosomal_organelles_complex_1_subunit_6,chr15:45879321-45908197:+,AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+	AU565_BREAST	0.16	0.23	0.0835	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	ATAD5--TLK2	2	5	ATAD5	19649	chr17:29205114:+	TLK2	48337	chr17:60650576:+	ONLY_REF_SPLICE	YES	9	30	0.44	0.19	0.0209	0.0522	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2	AU565_BREAST	0.19	0.44	0.0731	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	CTC-559E9.6--MTSS1	3	1	CTC-559E9.6	2476	chr19:19897500:+	MTSS1	18871	chr8:125603476:-	ONLY_REF_SPLICE	YES	3	5	0.57	0.44	0.0313	0.0104	CTC-559E9.6->chr19:19887411-19945736:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	AU565_BREAST	0.44	0.57	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	AGK--NDUFB2	3	0	AGK	2361	chr7:141255367:+	NDUFB2	34277	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	GTEx_FI:{Esophagus=[count:1=pct:0.2],Thyroid=[count:1=pct:0.6]},{Klijn_CCL:Lung=1,Ovary=1},AGK->acylglycerol_kinase,chr7:141250989-141355044:+,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	AU565_BREAST	1	1	0.0313	TRUE	1	5	0	3	1	TRUE	ACH-000248
AU565_BREAST	CPSF6--RAB3IP	3	0	CPSF6	1170	chr12:69633486:+	RAB3IP	22085	chr12:70149164:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	AU565_BREAST	1	1	0.0313	TRUE	0	0	0	3	0	TRUE	ACH-000248
AU565_BREAST	PLCD4--CXCR2	3	0	PLCD4	4266	chr2:219480682:+	CXCR2	21675	chr2:218991014:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	PLCD4->chr2:219472488-219501907:+,phospholipase_C_delta_4,CXCR2->C-X-C_motif_chemokine_receptor_2,chr2:218990012-219001976:+	AU565_BREAST	1	1	0.0313	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	PLCD4--CXCR2	2	1	PLCD4	4369	chr2:219480785:+	CXCR2	21675	chr2:218991014:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0209	0.0104	PLCD4->chr2:219472488-219501907:+,phospholipase_C_delta_4,CXCR2->C-X-C_motif_chemokine_receptor_2,chr2:218990012-219001976:+	AU565_BREAST	0.6	1	0.0313	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	ACLY--KRT19	2	0	ACLY	21602	chr17:40039375:-	KRT19	35735	chr17:39681525:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ACLY->ATP_citrate_lyase,chr17:40023161-40086795:-,KRT19->chr17:39679869-39684560:-,keratin_19	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	ATR--U2SURP	2	0	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	AU565_BREAST	1	1	0.0209	TRUE	0	10	0	10	7	TRUE	ACH-000248
AU565_BREAST	BCLAF1--MAP7	2	0	BCLAF1	1139	chr6:136610851:-	MAP7	27840	chr6:136742937:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	LOCAL_REARRANGEMENT:-:[52886],BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	C1orf132--CD46	2	0	C1orf132	2221	chr1:208041271:-	CD46	25901	chr1:207930359:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	LOCAL_INVERSION:-:+:[6005],C1orf132->chr1:207974863-208042495:-,chromosome_1_open_reading_frame_132,CD46->CD46_molecule,Oncogene{Bushman},chr1:207925402-207968858:+	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	HP1BP3--EIF4G3	2	0	HP1BP3	1129	chr1:21113688:-	EIF4G3	28440	chr1:21415706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	AU565_BREAST	1	1	0.0209	TRUE	0	2	0	6	0	TRUE	ACH-000248
AU565_BREAST	KIAA1731--NCL	2	0	KIAA1731	21008	chr11:93454578:+	NCL	43393	chr2:232320335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	KIAA1731->chr11:93394805-93463522:+,NCL->chr2:232318242-232348352:-,nucleolin	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	LYPLAL1--RRP15	2	0	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	AU565_BREAST	1	1	0.0209	TRUE	0	12	0	13	2	TRUE	ACH-000248
AU565_BREAST	MCF2L--CARS2	2	0	MCF2L	1054	chr13:113548745:+	CARS2	86265	chr13:111296830:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,CARS2->chr13:111293759-111365950:-,cysteinyl-tRNA_synthetase_2,_mitochondrial_(putative)	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	AU565_BREAST	1	1	0.0209	TRUE	1	10	0	18	0	TRUE	ACH-000248
AU565_BREAST	RHOA--DAG1	2	0	RHOA	2179	chr3:49449253:-	DAG1	21789	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[55715],RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,DAG1->chr3:49506146-49573048:+,dystroglycan_1	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	8	0	TRUE	ACH-000248
AU565_BREAST	VEZT--METAP2	2	0	VEZT	1141	chr12:95611662:+	METAP2	38328	chr12:95887832:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	VEZT->chr12:95611522-95696566:+,vezatin,_adherens_junctions_transmembrane_protein,METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	ZNF704--TBC1D31	2	0	ZNF704	3480	chr8:81733609:-	TBC1D31	35932	chr8:124089351:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704,TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	ZZZ3--GNAS	2	0	ZZZ3	1158	chr1:78148947:-	GNAS	40363	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
HS819T_FIBROBLAST	COL25A1--COL8A1	27	0	COL25A1	20923	chr4:109784475:-	COL8A1	60706	chr3:99513315:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3025	0	HGNC_GENEFAM,PROTCLUST,COL25A1->chr4:109731877-110223813:-,collagen_type_XXV_alpha_1,COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1	HS819T_FIBROBLAST	1	1	0.3025	TRUE	0	0	0	1	0	TRUE	ACH-000224
HS819T_FIBROBLAST	VIM-AS1--SERPINE1	5	0	VIM-AS1	1072	chr10:17271913:-	SERPINE1	12331	chr7:100773810:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	HS819T_FIBROBLAST	1	1	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000224
HS819T_FIBROBLAST	ADIRF-AS1--LGALS1	3	0	ADIRF-AS1	3782	chr10:88728287:-	LGALS1	10007	chr22:38071654:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	ADIRF-AS1->ADIRF_antisense_RNA_1,chr10:88725102-88731068:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HS819T_FIBROBLAST	1	1	0.0336	TRUE	0	0	0	5	0	TRUE	ACH-000224
HS819T_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS819T_FIBROBLAST	1	1	0.0336	TRUE	0	0	0	8	0	TRUE	ACH-000224
HS819T_FIBROBLAST	ARNT--PPP2CB	2	0	ARNT	15007	chr1:150801569:-	PPP2CB	33166	chr8:30657271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	ARNT->Oncogene{Bushman},aryl_hydrocarbon_receptor_nuclear_translocator,chr1:150782181-150849244:-,PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta	HS819T_FIBROBLAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000224
HS819T_FIBROBLAST	SP100--TRIP12	2	0	SP100	2724	chr2:231282380:+	TRIP12	49183	chr2:230724290:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	SP100->SP100_nuclear_antigen,chr2:231280657-231408805:+,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	HS819T_FIBROBLAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000224
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOA3--PRKD2	154	71	NCOA3	2242	chr20:46212005:+	PRKD2	37746	chr19:47201107:-	ONLY_REF_SPLICE	YES	128	90	0.64	0.71	1.9122	0.8816	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,PRKD2->chr19:47177532-47220384:-,protein_kinase_D2	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.71	2.7938	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FCHSD2--NCF2	90	54	FCHSD2	4185	chr11:72794740:-	NCF2	31311	chr1:183546842:-	ONLY_REF_SPLICE	YES	58	0	0.71	1	1.1175	0.6705	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,NCF2->chr1:183524698-183560011:-,neutrophil_cytosolic_factor_2	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	1.788	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFTUD2--MAP3K14	63	32	EFTUD2	16093	chr17:42949814:-	MAP3K14	36779	chr17:43366671:-	ONLY_REF_SPLICE	YES	179	62	0.35	0.61	0.7823	0.3973	{Klijn_CCL:Lymphoid=1},EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,MAP3K14->chr17:43340488-43394414:-,mitogen-activated_protein_kinase_kinase_kinase_14	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.61	1.1796	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SIK2--MCM3	55	32	SIK2	3489	chr11:111491126:+	MCM3	27278	chr6:52148204:-	ONLY_REF_SPLICE	YES	53	1186	0.62	0.07	0.6829	0.3973	SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,MCM3->chr6:52128807-52149679:-,minichromosome_maintenance_complex_component_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.62	1.0802	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP3CA--TBCK	45	28	PPP3CA	2540	chr4:102267896:-	TBCK	61631	chr4:107037535:-	ONLY_REF_SPLICE	YES	49	29	0.6	0.72	0.5588	0.3477	PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha,TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.72	0.9065	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	28	9	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.3477	0.1118	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.4595	TRUE	0	0	0	16	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1407O15.2--AC124789.1	27	11	RP11-1407O15.2	5790	chr17:36375100:-	AC124789.1	30615	chr17:36608071:-	ONLY_REF_SPLICE	YES	209	1	0.15	0.97	0.3353	0.1366	RP11-1407O15.2->chr17:36337717-36421858:-,AC124789.1->chr17:36606638-36608688:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.97	0.4719	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC41--TMCC3	26	13	CCDC41	1432	chr12:94853333:-	TMCC3	34241	chr12:94976314:-	ONLY_REF_SPLICE	YES	49	35	0.44	0.53	0.3228	0.1614	CCDC41->chr12:94700225-94853764:-,TMCC3->chr12:94960900-95044338:-,transmembrane_and_coiled-coil_domain_family_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.53	0.4842	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAMP2--MPI	22	24	SCAMP2	1167	chr15:75165540:-	MPI	15095	chr15:75183720:+	ONLY_REF_SPLICE	YES	320	310	0.13	0.13	0.2732	0.298	LOCAL_INVERSION:-:+:[16640],SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2,MPI->chr15:75182346-75191798:+,mannose_phosphate_isomerase	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.13	0.5712	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC30A9--SRSF3	20	0	SLC30A9	2454	chr4:42003797:+	SRSF3	32136	chr6:36568929:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2483	0	SLC30A9->chr4:41992489-42092474:+,solute_carrier_family_30_member_9,SRSF3->Oncogene{Bushman},chr6:36562145-36573377:+,serine/arginine-rich_splicing_factor_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--EP300	19	0	GLTSCR1	1973	chr19:48112425:+	EP300	23521	chr22:41513191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2359	0	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2359	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FCHSD2--NCF2	3	37	FCHSD2	3139	chr11:72851076:-	NCF2	31311	chr1:183546842:-	ONLY_REF_SPLICE	YES	51	0	0.44	1	0.0373	0.4594	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,NCF2->chr1:183524698-183560011:-,neutrophil_cytosolic_factor_2	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.4967	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC1--DAPK2	9	6	HERC1	10471	chr15:64046704:-	DAPK2	92020	chr15:64332466:-	ONLY_REF_SPLICE	YES	17	0	0.47	1	0.1118	0.0745	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[73094],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.1863	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTMR9--UNC5D	8	5	MTMR9	5607	chr8:11157657:+	UNC5D	25394	chr8:35406810:+	ONLY_REF_SPLICE	YES	18	0	0.42	1	0.0993	0.0621	MTMR9->chr8:11141925-11185646:+,myotubularin_related_protein_9,UNC5D->chr8:35092975-35654068:+,unc-5_netrin_receptor_D	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.1614	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--DAZL	8	4	RFTN1	3399	chr3:16535232:-	DAZL	29050	chr3:16640105:-	ONLY_REF_SPLICE	YES	154	1	0.07	0.92	0.0993	0.0497	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],LOCAL_REARRANGEMENT:-:[72766],RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.92	0.149	TRUE	0	1	0	2	1	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAMP2--MPI	1	28	SCAMP2	1167	chr15:75165540:-	MPI	14154	chr15:75182779:+	ONLY_REF_SPLICE	NO	320	23	0.08	0.56	0.0124	0.3477	LOCAL_INVERSION:-:+:[16640],SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2,MPI->chr15:75182346-75191798:+,mannose_phosphate_isomerase	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.56	0.3601	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC41--TMCC3	4	15	CCDC41	2485	chr12:94829051:-	TMCC3	34241	chr12:94976314:-	ONLY_REF_SPLICE	YES	55	35	0.26	0.35	0.0497	0.1863	CCDC41->chr12:94700225-94853764:-,TMCC3->chr12:94960900-95044338:-,transmembrane_and_coiled-coil_domain_family_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.35	0.236	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAMP2--MPI	1	27	SCAMP2	1167	chr15:75165540:-	MPI	14243	chr15:75182868:+	ONLY_REF_SPLICE	NO	320	28	0.08	0.5	0.0124	0.3353	LOCAL_INVERSION:-:+:[16640],SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2,MPI->chr15:75182346-75191798:+,mannose_phosphate_isomerase	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.5	0.3477	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTX2--SRRM3	7	1	DTX2	3034	chr7:76093026:+	SRRM3	26472	chr7:75877506:+	ONLY_REF_SPLICE	YES	26	0	0.24	1	0.0869	0.0124	DTX2->Oncogene{Bushman},chr7:76090993-76135312:+,deltex_2,_E3_ubiquitin_ligase,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.0993	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC6--RAPGEFL1	5	7	CDC6	8634	chr17:38453019:+	RAPGEFL1	20315	chr17:38345086:+	INCL_NON_REF_SPLICE	YES	152	6	0.07	0.67	0.0621	0.0869	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:+:[91977],CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.67	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTX2--SRRM3	6	3	DTX2	4154	chr7:76099736:+	SRRM3	26472	chr7:75877506:+	ONLY_REF_SPLICE	YES	26	0	0.26	1	0.0745	0.0373	DTX2->Oncogene{Bushman},chr7:76090993-76135312:+,deltex_2,_E3_ubiquitin_ligase,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.1118	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL17RB--CACNA1D	6	3	IL17RB	10322	chr3:53894255:+	CACNA1D	19372	chr3:53684806:+	ONLY_REF_SPLICE	YES	102	0	0.08	1	0.0745	0.0373	LOCAL_REARRANGEMENT:+:[32847],IL17RB->Oncogene{Bushman},chr3:53880607-53899827:+,interleukin_17_receptor_B,CACNA1D->calcium_voltage-gated_channel_subunit_alpha1_D,chr3:53528683-53847760:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.1118	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL6ST--AC022431.2	6	3	IL6ST	1210	chr5:55290612:-	AC022431.2	32294	chr5:55828982:-	ONLY_REF_SPLICE	YES	37	8	0.2	0.53	0.0745	0.0373	IL6ST->Oncogene{Bushman},chr5:55230923-55290821:-,interleukin_6_signal_transducer,AC022431.2->chr5:55807394-55902059:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.53	0.1118	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC6--RAPGEFL1	4	7	CDC6	8634	chr17:38453019:+	RAPGEFL1	20347	chr17:38345118:+	ONLY_REF_SPLICE	YES	152	7	0.07	0.61	0.0497	0.0869	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:+:[91977],CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.61	0.1366	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFTUD2--MAP3K14	3	11	EFTUD2	14070	chr17:42953302:-	MAP3K14	36779	chr17:43366671:-	ONLY_REF_SPLICE	YES	331	62	0.04	0.18	0.0373	0.1366	{Klijn_CCL:Lymphoid=1},EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,MAP3K14->chr17:43340488-43394414:-,mitogen-activated_protein_kinase_kinase_kinase_14	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.18	0.1739	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL6ST--AC022431.2	5	3	IL6ST	1210	chr5:55290612:-	AC022431.2	31195	chr5:55831055:-	ONLY_REF_SPLICE	YES	37	0	0.18	1	0.0621	0.0373	IL6ST->Oncogene{Bushman},chr5:55230923-55290821:-,interleukin_6_signal_transducer,AC022431.2->chr5:55807394-55902059:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.0994	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	5	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0621	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0621	TRUE	1	10	0	18	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	2	11	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	10	0	0.57	1	0.0248	0.1366	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.1614	TRUE	0	0	0	11	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTMR9--UNC5D	3	5	MTMR9	5700	chr8:11157750:+	UNC5D	25394	chr8:35406810:+	INCL_NON_REF_SPLICE	YES	26	0	0.24	1	0.0373	0.0621	MTMR9->chr8:11141925-11185646:+,myotubularin_related_protein_9,UNC5D->chr8:35092975-35654068:+,unc-5_netrin_receptor_D	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.0994	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC6--RAPGEFL1	2	6	CDC6	7519	chr17:38451708:+	RAPGEFL1	20347	chr17:38345118:+	ONLY_REF_SPLICE	YES	139	7	0.05	0.53	0.0248	0.0745	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:+:[91977],CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.53	0.0993	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFTUD2--RP11-326A19.4	3	0	EFTUD2	1294	chr17:42976737:-	RP11-326A19.4	35492	chr15:89613322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,RP11-326A19.4->chr15:89584454-89626050:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE7A--CTD-3025N20.2	3	0	PDE7A	1952	chr8:66753606:-	CTD-3025N20.2	27862	chr8:66447099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	PDE7A->chr8:66629745-66754557:-,phosphodiesterase_7A,CTD-3025N20.2->chr8:66439243-66475015:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	1	5	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	10	7	0.38	0.46	0.0124	0.0621	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.46	0.0745	TRUE	0	0	0	13	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30007	chr8:144669019:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	1	10	0	18	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTX2--SRRM3	1	1	DTX2	1161	chr7:76091153:+	SRRM3	26472	chr7:75877506:+	ONLY_REF_SPLICE	YES	22	0	0.08	1	0.0124	0.0124	DTX2->Oncogene{Bushman},chr7:76090993-76135312:+,deltex_2,_E3_ubiquitin_ligase,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTMR9--UNC5D	1	1	MTMR9	3429	chr8:11152811:+	UNC5D	25394	chr8:35406810:+	ONLY_REF_SPLICE	YES	34	0	0.06	1	0.0124	0.0124	MTMR9->chr8:11141925-11185646:+,myotubularin_related_protein_9,UNC5D->chr8:35092975-35654068:+,unc-5_netrin_receptor_D	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB15--CTD-2509G16.5	1	1	RAB15	1824	chr14:65438671:-	CTD-2509G16.5	17912	chr14:65714441:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0124	0.0124	RAB15->RAB15,_member_RAS_oncogene_family,chr14:65412532-65439494:-,CTD-2509G16.5->chr14:65703198-65785508:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000653
NCIH2291_LUNG	MAML2--TUBA3D	49	12	MAML2	2798	chr11:96074547:-	TUBA3D	16217	chr2:132235737:+	ONLY_REF_SPLICE	YES	12	0	0.84	1	0.5952	0.1458	MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,TUBA3D->chr2:132233666-132240507:+,tubulin_alpha_3d	NCIH2291_LUNG	0.84	1	0.741	TRUE	0	0	0	1	0	TRUE	ACH-000718
NCIH2291_LUNG	RAB10--ANAPC1P1	13	2	RAB10	1629	chr2:26257604:+	ANAPC1P1	12293	chr2:87098430:+	INCL_NON_REF_SPLICE	YES	109	0	0.12	1	0.1579	0.0243	RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+,ANAPC1P1->anaphase_promoting_complex_subunit_1_pseudogene_1,chr2:87098424-87149816:+	NCIH2291_LUNG	0.12	1	0.1822	TRUE	0	0	0	1	0	TRUE	ACH-000718
NCIH2291_LUNG	KRT7--P4HB	4	0	KRT7	5529	chr12:52632508:+	P4HB	18785	chr17:79817165:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	KRT7->chr12:52626304-52645970:+,keratin_7,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	NCIH2291_LUNG	1	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000718
NCIH2291_LUNG	KRT7--TUBA1C	4	0	KRT7	1809	chr12:52627112:+	TUBA1C	26832	chr12:49666110:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	KRT7->chr12:52626304-52645970:+,keratin_7,TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c	NCIH2291_LUNG	1	1	0.0486	TRUE	0	0	0	4	0	TRUE	ACH-000718
NCIH2291_LUNG	VCL--RP11-574K11.8	4	0	VCL	2333	chr10:75802911:+	RP11-574K11.8	30958	chr10:75606093:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,RP11-574K11.8->chr10:75601591-75606324:+	NCIH2291_LUNG	1	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000718
NCIH2291_LUNG	FTH1--ACTB	3	0	FTH1	1148	chr11:61734985:-	ACTB	12968	chr7:5568855:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH2291_LUNG	1	1	0.0364	TRUE	0	0	0	8	0	TRUE	ACH-000718
NCIH2291_LUNG	AKAP13--PDE8A	2	0	AKAP13	11544	chr15:86087186:+	PDE8A	69389	chr15:85607601:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	NCIH2291_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000718
NCIH2291_LUNG	RP1-43E13.2--CAPZB	2	0	RP1-43E13.2	1059	chr1:19537053:+	CAPZB	10088	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_INVERSION:+:-:[98069],RP1-43E13.2->chr1:19536995-19567198:+,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	NCIH2291_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000718
NCIH2291_LUNG	USP4--RHOA	2	0	USP4	2917	chr3:49372902:-	RHOA	35012	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[18433],USP4->Oncogene{Bushman},chr3:49315264-49378145:-,ubiquitin_specific_peptidase_4,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	NCIH2291_LUNG	1	1	0.0243	TRUE	0	2	0	2	2	TRUE	ACH-000718
DU145_PROSTATE	C14orf166--SLC25A21	667	331	C14orf166	7469	chr14:52468584:+	SLC25A21	22129	chr14:37180687:-	ONLY_REF_SPLICE	YES	431	3	0.7	1	10.4651	5.1933	{Klijn_CCL:Other=1},C14orf166->chr14:52456193-52471420:+,chromosome_14_open_reading_frame_166,SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21	DU145_PROSTATE	0.7	1	15.6584	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	UBE2L3--KRAS	192	99	UBE2L3	5318	chr22:21965332:+	KRAS	13025	chr12:25398329:-	ONLY_REF_SPLICE	YES	294	17	0.5	0.94	3.0125	1.5533	Cosmic{samples=1,mutations=1,papers=1},{Klijn_CCL:Other=1},UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-	DU145_PROSTATE	0.5	0.94	4.5658	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	LDLR--RPL31P11	124	42	LDLR	13239	chr19:11224438:+	RPL31P11	27084	chr1:161655000:-	INCL_NON_REF_SPLICE	YES	42	0	0.8	1	1.9455	0.659	LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,RPL31P11->chr1:161653485-161655042:-,ribosomal_protein_L31_pseudogene_11	DU145_PROSTATE	0.8	1	2.6045	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	C14orf166--SLC25A21	3	176	C14orf166	6323	chr14:52466514:+	SLC25A21	22129	chr14:37180687:-	ONLY_REF_SPLICE	YES	323	3	0.36	0.98	0.0471	2.7614	{Klijn_CCL:Other=1},C14orf166->chr14:52456193-52471420:+,chromosome_14_open_reading_frame_166,SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21	DU145_PROSTATE	0.36	0.98	2.8085	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	C14orf166--SLC25A21	2	66	C14orf166	7469	chr14:52468584:+	SLC25A21	23295	chr14:37154130:-	ONLY_REF_SPLICE	YES	431	277	0.14	0.2	0.0314	1.0355	{Klijn_CCL:Other=1},C14orf166->chr14:52456193-52471420:+,chromosome_14_open_reading_frame_166,SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21	DU145_PROSTATE	0.14	0.2	1.0669	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	UBE2L3--KRAS	1	35	UBE2L3	5318	chr22:21965332:+	KRAS	16555	chr12:25380346:-	ONLY_REF_SPLICE	YES	294	52	0.11	0.41	0.0157	0.5491	Cosmic{samples=1,mutations=1,papers=1},{Klijn_CCL:Other=1},UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-	DU145_PROSTATE	0.11	0.41	0.5648	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	DPY19L2P2--DNAJC2	3	1	DPY19L2P2	13218	chr7:102881009:-	DNAJC2	34930	chr7:102982401:-	ONLY_REF_SPLICE	YES	2	82	0.67	0.05	0.0471	0.0157	LOCAL_REARRANGEMENT:-:[32064],DPY19L2P2->DPY19L2_pseudogene_2,chr7:102815580-102920857:-,DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-	DU145_PROSTATE	0.05	0.67	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	RP11-175P13.3--ANKS1B	3	1	RP11-175P13.3	6913	chr12:100570821:-	ANKS1B	12954	chr12:100219167:-	ONLY_REF_SPLICE	YES	4	2	0.5	0.67	0.0471	0.0157	RP11-175P13.3->chr12:100566974-100593561:-,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	DU145_PROSTATE	0.5	0.67	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	AFG3L2--IFIT5	2	0	AFG3L2	14094	chr18:12344131:-	IFIT5	25279	chr10:91176962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	AFG3L2->AFG3_like_matrix_AAA_peptidase_subunit_2,chr18:12328943-12377313:-,IFIT5->chr10:91174343-91180758:+,interferon_induced_protein_with_tetratricopeptide_repeats_5	DU145_PROSTATE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	MFGE8--DYNC2H1	2	0	MFGE8	7145	chr15:89448988:-	DYNC2H1	101327	chr11:103270391:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	MFGE8->chr15:89441916-89456642:-,milk_fat_globule-EGF_factor_8_protein,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	DU145_PROSTATE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	POLE2--PPP1CC	2	0	POLE2	3464	chr14:50146443:-	PPP1CC	24621	chr12:111169706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit,PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma	DU145_PROSTATE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	UBAP2L--AC008067.2	2	0	UBAP2L	23719	chr1:154234173:+	AC008067.2	35188	chr2:80840119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like,AC008067.2->chr2:80802238-80845902:-	DU145_PROSTATE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000979
IGR37_SKIN	SSH2--STK11	88	64	SSH2	1339	chr17:28256956:-	STK11	40377	chr19:1218416:+	ONLY_REF_SPLICE	YES	89	2	0.63	0.99	0.8998	0.6544	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR37_SKIN	0.63	0.99	1.5542	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	SSH2--STK11	45	79	SSH2	5062	chr17:28175867:-	STK11	40377	chr19:1218416:+	ONLY_REF_SPLICE	YES	11	2	0.92	0.98	0.4601	0.8078	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR37_SKIN	0.92	0.98	1.2679	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	EFTUD1--CTD-2034I4.2	32	8	EFTUD1	1150	chr15:82554955:-	CTD-2034I4.2	33406	chr15:81980751:+	ONLY_REF_SPLICE	YES	2	0	0.95	1	0.3272	0.0818	EFTUD1->chr15:82422571-82555104:-,CTD-2034I4.2->chr15:81846344-81989121:+	IGR37_SKIN	0.95	1	0.409	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	TBL1X--WWC3	26	25	TBL1X	9851	chrX:9622362:+	WWC3	35204	chrX:10058811:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2659	0.2556	TBL1X->chrX:9431335-9687780:+,transducin_(beta)-like_1X-linked,WWC3->WWC_family_member_3,chrX:9983602-10112518:+	IGR37_SKIN	1	1	0.5215	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	SSH2--STK11	5	90	SSH2	5062	chr17:28175867:-	STK11	39246	chr19:1216267:+	ONLY_REF_SPLICE	YES	11	0	0.9	1	0.0511	0.9203	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR37_SKIN	0.9	1	0.9714	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	SSH2--STK11	7	72	SSH2	1339	chr17:28256956:-	STK11	39246	chr19:1216267:+	ONLY_REF_SPLICE	YES	89	0	0.47	1	0.0716	0.7362	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR37_SKIN	0.47	1	0.8078	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	HDGFRP3--RP13-996F3.3	15	4	HDGFRP3	9055	chr15:83819967:-	RP13-996F3.3	16727	chr15:83146651:-	ONLY_REF_SPLICE	YES	134	39	0.12	0.33	0.1534	0.0409	HDGFRP3->chr15:83784320-83876770:-,RP13-996F3.3->chr15:83141718-83182928:-	IGR37_SKIN	0.12	0.33	0.1943	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	FAM154B--RP11-152F13.7	6	3	FAM154B	1123	chr15:82555273:+	RP11-152F13.7	13317	chr15:82969811:+	ONLY_REF_SPLICE	YES	3	44	0.75	0.17	0.0614	0.0307	FAM154B->chr15:82555151-82577271:+,RP11-152F13.7->chr15:82944773-82974312:+	IGR37_SKIN	0.17	0.75	0.0921	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	FAM101A--RP11-114H23.2	5	1	FAM101A	6449	chr12:124780182:+	RP11-114H23.2	14613	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0511	0.0102	FAM101A->chr12:124457788-124800570:+,family_with_sequence_similarity_101_member_A,RP11-114H23.2->chr12:76087790-76092596:-	IGR37_SKIN	1	1	0.0613	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	GNL1--GALNT2	5	0	GNL1	12394	chr6:30510182:-	GALNT2	26581	chr1:230384985:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	GNL1->G_protein_nucleolar_1_(putative),chr6:30509154-30524951:-,GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2	IGR37_SKIN	1	1	0.0511	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	AKT3--CEP170	2	0	AKT3	3500	chr1:244006427:-	CEP170	40024	chr1:243388623:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	{Klijn_CCL:Head-Neck=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	BACE2--MBP	2	0	BACE2	5797	chr21:42608591:+	MBP	45727	chr18:74702016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	BACE2->beta-site_APP-cleaving_enzyme_2,chr21:42539728-42654445:+,MBP->chr18:74690783-74845639:-,myelin_basic_protein	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	C22orf39--UBOX5	2	0	C22orf39	1855	chr22:19434901:-	UBOX5	37835	chr20:3096112:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,UBOX5->U-box_domain_containing_5,chr20:3088219-3140842:-	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	DEXI--GTSE1	2	0	DEXI	4396	chr16:11023074:-	GTSE1	8362	chr22:46693277:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	DEXI->Dexi_homolog,chr16:11022748-11036317:-,GTSE1->G2_and_S-phase_expressed_1,chr22:46692638-46726707:+	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	DUSP10--RP11-400N13.3	2	0	DUSP10	3050	chr1:221912276:-	RP11-400N13.3	13554	chr1:222232020:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	DUSP10->Oncogene{Bushman},chr1:221874766-221915518:-,dual_specificity_phosphatase_10,RP11-400N13.3->chr1:222215047-222238105:-	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	HIATL2--METTL2A	2	0	HIATL2	4609	chr9:99711837:-	METTL2A	20370	chr17:60522198:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	HIATL2->chr9:99660348-99775862:-,METTL2A->chr17:60501228-60527454:+,methyltransferase_like_2A	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	HSF4--SCYL1	2	0	HSF4	3246	chr16:67199533:+	SCYL1	20536	chr11:65305913:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	HSF4->chr16:67197288-67203848:+,heat_shock_transcription_factor_4,SCYL1->Oncogene{Bushman},SCY1_like_pseudokinase_1,chr11:65292548-65306175:+	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	ITSN1--ANKRD28	2	0	ITSN1	1314	chr21:35015019:+	ANKRD28	86700	chr3:15751243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	ITSN1->chr21:35014706-35272165:+,intersectin_1,ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	KMT2E--PMPCA	2	0	KMT2E	8894	chr7:104707254:+	PMPCA	38738	chr9:139311403:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,PMPCA->chr9:139305110-139318213:+,peptidase,_mitochondrial_processing_alpha_subunit	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	NELFA--NDUFS3	2	0	NELFA	10905	chr4:1993271:-	NDUFS3	27996	chr11:47603640:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	NELFA->chr4:1984441-2043630:-,negative_elongation_factor_complex_member_A,NDUFS3->NADH:ubiquinone_oxidoreductase_core_subunit_S3,chr11:47586888-47606114:+	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	PHLPP1--ADNP2	2	0	PHLPP1	5188	chr18:60497464:+	ADNP2	35768	chr18:77875413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	PHLPP1->Oncogene{Bushman},PH_domain_and_leucine_rich_repeat_protein_phosphatase_1,chr18:60382672-60647666:+,ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	PLS3--TMEM14C	2	0	PLS3	1087	chrX:114795587:+	TMEM14C	26312	chr6:10724803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	PLS3->chrX:114795501-114885181:+,plastin_3,TMEM14C->chr6:10723148-10731362:+,transmembrane_protein_14C	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	REL--UGP2	2	0	REL	1330	chr2:61108985:+	UGP2	31698	chr2:64109600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	REL->Oncogene{Bushman},REL_proto-oncogene,_NF-kB_subunit,chr2:61108656-61158745:+,UGP2->UDP-glucose_pyrophosphorylase_2,chr2:64068074-64118696:+	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	SCFD1--COG7	2	0	SCFD1	25050	chr14:31171581:+	COG7	38911	chr16:23457282:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	SCFD1->chr14:31091318-31205018:+,sec1_family_domain_containing_1,COG7->chr16:23399814-23464501:-,component_of_oligomeric_golgi_complex_7	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	SEPT7--FBXO8	2	0	SEPT7	8977	chr7:35913385:+	FBXO8	34933	chr4:175160341:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	SEPT7->chr7:35840542-35944917:+,septin_7,FBXO8->F-box_protein_8,chr4:175157809-175205415:-	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	TEX10--PTBP3	2	0	TEX10	1168	chr9:103115054:-	PTBP3	27043	chr9:115060196:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	TEX10->chr9:103064359-103115221:-,testis_expressed_10,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	TIMM17A--B4GALT7	2	0	TIMM17A	2356	chr1:201926702:+	B4GALT7	12805	chr5:177028427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	TIMM17A->chr1:201924619-201939789:+,translocase_of_inner_mitochondrial_membrane_17_homolog_A_(yeast),B4GALT7->beta-1,4-galactosyltransferase_7,chr5:177027101-177037348:+	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	FAM154B--RP11-152F13.7	1	2	FAM154B	1123	chr15:82555273:+	RP11-152F13.7	13661	chr15:82970155:+	ONLY_REF_SPLICE	YES	3	62	0.5	0.05	0.0102	0.0205	FAM154B->chr15:82555151-82577271:+,RP11-152F13.7->chr15:82944773-82974312:+	IGR37_SKIN	0.05	0.5	0.0307	TRUE	0	0	0	1	0	TRUE	ACH-000650
NCIH146_LUNG	PTGES3--AC108051.1	280	39	PTGES3	5533	chr12:57064059:-	AC108051.1	15797	chr2:103583963:-	ONLY_REF_SPLICE	YES	855	0	0.27	1	3.4515	0.4807	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,AC108051.1->chr2:103583866-103600887:-	NCIH146_LUNG	0.27	1	3.9322	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	AKT3--AC016629.3	116	67	AKT3	3500	chr1:244006427:-	AC016629.3	36902	chr19:59110627:-	INCL_NON_REF_SPLICE	YES	77	0	0.7	1	1.4299	0.8259	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,AC016629.3->chr19:59105263-59110722:-	NCIH146_LUNG	0.7	1	2.2558	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	PMM2--ABAT	38	30	PMM2	13956	chr16:8906963:+	ABAT	39627	chr16:8858595:+	ONLY_REF_SPLICE	YES	49	116	0.58	0.37	0.4684	0.3698	{Klijn_CCL:Lung=1,Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[4248],PMM2->chr16:8882680-8943188:+,phosphomannomutase_2,ABAT->4-aminobutyrate_aminotransferase,chr16:8768422-8878432:+	NCIH146_LUNG	0.37	0.58	0.8382	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	32	21	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	41694	chr5:80531941:-	ONLY_REF_SPLICE	YES	3	7	0.95	0.88	0.3945	0.2589	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.88	0.95	0.6534	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	S1PR2--AC013394.2	19	15	S1PR2	1069	chr19:10341880:-	AC013394.2	13851	chr15:93440954:+	ONLY_REF_SPLICE	YES	17	187	0.67	0.15	0.2342	0.1849	S1PR2->chr19:10334520-10341948:-,sphingosine-1-phosphate_receptor_2,AC013394.2->chr15:93425937-93441975:+	NCIH146_LUNG	0.15	0.67	0.4191	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SLCO1A2--C2CD5	19	7	SLCO1A2	22351	chr12:21445098:-	C2CD5	47900	chr12:22646271:-	ONLY_REF_SPLICE	YES	33	87	0.44	0.23	0.2342	0.0863	SLCO1A2->chr12:21417534-21572528:-,solute_carrier_organic_anion_transporter_family_member_1A2,C2CD5->C2_calcium-dependent_domain_containing_5,chr12:22601517-22697480:-	NCIH146_LUNG	0.23	0.44	0.3205	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	17	5	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	44219	chr5:80515611:-	ONLY_REF_SPLICE	YES	3	0	0.88	1	0.2096	0.0616	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.88	1	0.2712	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	MYO3A--SCD5	15	8	MYO3A	4469	chr10:26243937:+	SCD5	45828	chr4:83626566:-	ONLY_REF_SPLICE	YES	21	15	0.52	0.61	0.1849	0.0986	MYO3A->chr10:26223196-26501456:+,myosin_IIIA,SCD5->chr4:83550692-83720010:-,stearoyl-CoA_desaturase_5	NCIH146_LUNG	0.52	0.61	0.2835	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	S1PR2--AC013394.2	13	16	S1PR2	2213	chr19:10335480:-	AC013394.2	13851	chr15:93440954:+	INCL_NON_REF_SPLICE	YES	25	187	0.54	0.13	0.1602	0.1972	S1PR2->chr19:10334520-10341948:-,sphingosine-1-phosphate_receptor_2,AC013394.2->chr15:93425937-93441975:+	NCIH146_LUNG	0.13	0.54	0.3574	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	PARP4--OSBPL9	13	11	PARP4	30636	chr13:25015984:-	OSBPL9	43950	chr1:52117663:+	ONLY_REF_SPLICE	YES	38	31	0.39	0.44	0.1602	0.1356	PARP4->chr13:24995064-25086948:-,poly(ADP-ribose)_polymerase_family_member_4,OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9	NCIH146_LUNG	0.39	0.44	0.2958	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	GUSBP2--RP11-457M11.5	13	7	GUSBP2	9031	chr6:26846479:-	RP11-457M11.5	15456	chr6:26687347:+	INCL_NON_REF_SPLICE	YES	7	6	0.74	0.77	0.1602	0.0863	GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2,RP11-457M11.5->chr6:26686469-26688192:+	NCIH146_LUNG	0.74	0.77	0.2465	TRUE	1	2	0	3	2	TRUE	ACH-000506
NCIH146_LUNG	ZNF443--CACNA1A	12	7	ZNF443	4499	chr19:12541714:-	CACNA1A	33669	chr19:13397780:-	INCL_NON_REF_SPLICE	YES	15	79	0.56	0.19	0.1479	0.0863	ZNF443->chr19:12540521-12551926:-,zinc_finger_protein_443,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	NCIH146_LUNG	0.19	0.56	0.2342	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SMEK2--RTN4	13	1	SMEK2	6792	chr2:55831114:-	RTN4	41919	chr2:55214834:-	ONLY_REF_SPLICE	YES	28	174	0.33	0.07	0.1602	0.0123	GTEx&tcga_normals:1/3694=0.03%,SMEK2->chr2:55774428-55846015:-,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	NCIH146_LUNG	0.07	0.33	0.1725	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	EFNA5--RP11-252I13.2	11	8	EFNA5	1407	chr5:107006190:-	RP11-252I13.2	16014	chr5:107046209:-	ONLY_REF_SPLICE	YES	9	1	0.68	0.95	0.1356	0.0986	LOCAL_REARRANGEMENT:-:[28940],EFNA5->chr5:106712590-107006596:-,ephrin_A5,RP11-252I13.2->chr5:107035536-107052542:-	NCIH146_LUNG	0.68	0.95	0.2342	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SYN3--LARGE	9	5	SYN3	5498	chr22:33376630:-	LARGE	58411	chr22:33562818:-	ONLY_REF_SPLICE	YES	25	0	0.36	1	0.1109	0.0616	SYN3->chr22:32908539-33454358:-,synapsin_III,LARGE->chr22:33558212-34318829:-,like-glycosyltransferase	NCIH146_LUNG	0.36	1	0.1725	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	3	26	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	37232	chr5:80541228:-	ONLY_REF_SPLICE	YES	3	13	0.91	0.69	0.037	0.3205	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.69	0.91	0.3575	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	2	28	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	36149	chr5:80542791:-	ONLY_REF_SPLICE	YES	3	12	0.91	0.71	0.0247	0.3451	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.71	0.91	0.3698	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	2	28	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	35062	chr5:80546608:-	ONLY_REF_SPLICE	YES	3	11	0.91	0.73	0.0247	0.3451	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.73	0.91	0.3698	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	PMM2--ABAT	4	14	PMM2	13956	chr16:8906963:+	ABAT	41097	chr16:8860065:+	ONLY_REF_SPLICE	YES	49	102	0.27	0.15	0.0493	0.1726	{Klijn_CCL:Lung=1,Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[4248],PMM2->chr16:8882680-8943188:+,phosphomannomutase_2,ABAT->4-aminobutyrate_aminotransferase,chr16:8768422-8878432:+	NCIH146_LUNG	0.15	0.27	0.2219	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	S1PR2--AC013394.2	3	17	S1PR2	2314	chr19:10335379:-	AC013394.2	13851	chr15:93440954:+	INCL_NON_REF_SPLICE	YES	6	187	0.77	0.1	0.037	0.2096	S1PR2->chr19:10334520-10341948:-,sphingosine-1-phosphate_receptor_2,AC013394.2->chr15:93425937-93441975:+	NCIH146_LUNG	0.1	0.77	0.2466	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	RP11-459O1.2--CNR1	6	4	RP11-459O1.2	2236	chr6:89033719:-	CNR1	14602	chr6:88855056:-	ONLY_REF_SPLICE	YES	0	3	1	0.77	0.074	0.0493	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	NCIH146_LUNG	0.77	1	0.1233	TRUE	0	1	0	2	1	TRUE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	1	22	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	38903	chr5:80535174:-	ONLY_REF_SPLICE	YES	3	12	0.88	0.66	0.0123	0.2712	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.66	0.88	0.2835	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	1	22	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	38898	chr5:80535179:-	ONLY_REF_SPLICE	YES	3	13	0.88	0.64	0.0123	0.2712	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.64	0.88	0.2835	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	TYMS--GNAS	6	0	TYMS	4286	chr18:662320:+	GNAS	29027	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.074	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH146_LUNG	1	1	0.074	TRUE	0	2	0	3	0	TRUE	ACH-000506
NCIH146_LUNG	ZNF443--CACNA1A	5	3	ZNF443	3822	chr19:12542391:-	CACNA1A	33669	chr19:13397780:-	INCL_NON_REF_SPLICE	YES	30	79	0.21	0.09	0.0616	0.037	ZNF443->chr19:12540521-12551926:-,zinc_finger_protein_443,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	NCIH146_LUNG	0.09	0.21	0.0986	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	ZNF250--TRAPPC9	5	2	ZNF250	13108	chr8:146101922:-	TRAPPC9	48206	chr8:141034176:-	ONLY_REF_SPLICE	YES	5	21	0.58	0.25	0.0616	0.0247	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	NCIH146_LUNG	0.25	0.58	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	VWDE--PHF14	5	1	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	23	50	0.21	0.11	0.0616	0.0123	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH146_LUNG	0.11	0.21	0.0739	TRUE	0	6	0	17	2	TRUE	ACH-000506
NCIH146_LUNG	PROM1--TAPT1	4	2	PROM1	8824	chr4:16077310:-	TAPT1	51133	chr4:16215521:-	ONLY_REF_SPLICE	YES	2	26	0.75	0.19	0.0493	0.0247	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[76127],PROM1->chr4:15964699-16086001:-,prominin_1,TAPT1->chr4:16162128-16229033:-,transmembrane_anterior_posterior_transformation_1	NCIH146_LUNG	0.19	0.75	0.074	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	AKT3--AC016629.3	1	12	AKT3	3500	chr1:244006427:-	AC016629.3	38063	chr19:59109183:-	ONLY_REF_SPLICE	YES	77	18	0.14	0.42	0.0123	0.1479	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,AC016629.3->chr19:59105263-59110722:-	NCIH146_LUNG	0.14	0.42	0.1602	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	DPYSL5--YIPF4	4	0	DPYSL5	17939	chr2:27171466:+	YIPF4	37274	chr2:32539012:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0	DPYSL5->chr2:27070615-27173219:+,dihydropyrimidinase_like_5,YIPF4->Yip1_domain_family_member_4,chr2:32502979-32541663:+	NCIH146_LUNG	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SHFM1--DLX6-AS1	4	0	SHFM1	7020	chr7:96324110:-	DLX6-AS1	31487	chr7:96598430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH146_LUNG	1	1	0.0493	TRUE	0	1	0	6	0	TRUE	ACH-000506
NCIH146_LUNG	MYO3A--SCD5	3	1	MYO3A	2149	chr10:26224759:+	SCD5	45828	chr4:83626566:-	ONLY_REF_SPLICE	YES	23	15	0.15	0.21	0.037	0.0123	MYO3A->chr10:26223196-26501456:+,myosin_IIIA,SCD5->chr4:83550692-83720010:-,stearoyl-CoA_desaturase_5	NCIH146_LUNG	0.15	0.21	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	ATP8B1--MAPK8	2	0	ATP8B1	3779	chr18:55398859:-	MAPK8	49703	chr10:49639236:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	ATP8B1->ATPase_phospholipid_transporting_8B1,Oncogene{Bushman},chr18:55313658-55470333:-,MAPK8->Oncogene{Bushman},chr10:49514698-49647403:+,mitogen-activated_protein_kinase_8	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	ATRX--PGK1	2	0	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	NCIH146_LUNG	1	1	0.0247	TRUE	0	1	0	9	0	TRUE	ACH-000506
NCIH146_LUNG	CPSF6--BAGE2	2	0	CPSF6	11046	chr12:69656342:+	BAGE2	24376	chr21:11058323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	NCIH146_LUNG	1	1	0.0247	TRUE	0	1	0	2	0	TRUE	ACH-000506
NCIH146_LUNG	DNAJC24--IMMP1L	2	0	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	NCIH146_LUNG	1	1	0.0247	TRUE	0	4	0	9	1	TRUE	ACH-000506
NCIH146_LUNG	NR2F1-AS1--SKIV2L2	2	0	NR2F1-AS1	6705	chr5:92899070:-	SKIV2L2	25696	chr5:54618155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-,SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	PDAP1--ZNF789	2	0	PDAP1	3518	chr7:99001021:-	ZNF789	14783	chr7:99074026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	LOCAL_INVERSION:-:+:[64012],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,ZNF789->chr7:99070464-99101273:+,zinc_finger_protein_789	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	PTPRO--EPS8	2	0	PTPRO	1405	chr12:15475735:+	EPS8	46133	chr12:15835906:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	LOCAL_INVERSION:+:-:[22759],PTPRO->chr12:15475331-15750333:+,protein_tyrosine_phosphatase,_receptor_type_O,EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	PXMP2--TPM3	2	0	PXMP2	2662	chr12:133266962:+	TPM3	30642	chr1:154130197:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,TPM3->Oncogene{Bushman},chr1:154127784-154167124:-,tropomyosin_3	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	STAG3L1--SAR1A	2	0	STAG3L1	5752	chr7:74995707:+	SAR1A	19380	chr10:71920825:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	STAG3L1->chr7:74988448-75024657:+,stromal_antigen_3-like_1_(pseudogene),SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	TMEM241--SYMPK	2	0	TMEM241	17323	chr18:20889644:-	SYMPK	33589	chr19:46357765:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,SYMPK->chr19:46318668-46366548:-,symplekin	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	TYMS--PCBP2	2	0	TYMS	4286	chr18:662320:+	PCBP2	28728	chr12:53862564:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	VPS35--C16orf87	2	0	VPS35	7356	chr16:46712855:-	C16orf87	30117	chr16:46836982:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	GTEx&tcga_normals:1/3694=0.03%,VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-,C16orf87->chr16:46830519-46865323:-,chromosome_16_open_reading_frame_87	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	RP11-459O1.2--CNR1	1	2	RP11-459O1.2	1090	chr6:89130663:-	CNR1	14602	chr6:88855056:-	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.0123	0.0247	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	NCIH146_LUNG	0.5	1	0.037	TRUE	0	1	0	2	1	TRUE	ACH-000506
NCIH146_LUNG	ZNF250--TRAPPC9	1	2	ZNF250	14319	chr8:146096003:-	TRAPPC9	48206	chr8:141034176:-	ONLY_REF_SPLICE	YES	2	21	0.6	0.12	0.0123	0.0247	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	NCIH146_LUNG	0.12	0.6	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	ZNF250--TRAPPC9	1	1	ZNF250	9280	chr8:146105750:-	TRAPPC9	48206	chr8:141034176:-	ONLY_REF_SPLICE	YES	5	21	0.29	0.09	0.0123	0.0123	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	NCIH146_LUNG	0.09	0.29	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000506
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNMT1--TYK2	475	216	DNMT1	7402	chr19:10292717:-	TYK2	53838	chr19:10469978:-	ONLY_REF_SPLICE	YES	173	189	0.8	0.79	4.4191	2.0095	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,TYK2->chr19:10461209-10491352:-,tyrosine_kinase_2	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	0.8	6.4286	TRUE	0	0	0	1	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNMT1--TYK2	42	94	DNMT1	7402	chr19:10292717:-	TYK2	54966	chr19:10468814:-	ONLY_REF_SPLICE	YES	173	226	0.44	0.38	0.3907	0.8745	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,TYK2->chr19:10461209-10491352:-,tyrosine_kinase_2	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.44	1.2652	TRUE	0	0	0	1	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP4--NUPL1	33	3	SSBP4	1844	chr19:18530517:+	NUPL1	15377	chr13:25881944:+	ONLY_REF_SPLICE	YES	29	84	0.55	0.3	0.307	0.0279	SSBP4->Oncogene{Bushman},chr19:18529674-18545372:+,single_stranded_DNA_binding_protein_4,NUPL1->chr13:25875662-25923938:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.55	0.3349	TRUE	0	0	0	1	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	12	1	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	31250	chr5:151575002:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.1116	0.0093	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.1209	TRUE	0	1	0	2	1	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--GSE1	9	3	PVT1	1202	chr8:128806980:+	GSE1	30817	chr16:85667520:+	ONLY_REF_SPLICE	YES	174	13	0.06	0.48	0.0837	0.0279	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.48	0.1116	TRUE	0	0	0	1	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAS1L--NCL	8	0	LAS1L	13911	chrX:64737973:-	NCL	25282	chr2:232325470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0744	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0744	TRUE	0	0	0	3	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--SEPT7	7	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0651	TRUE	1	1	0	18	1	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAS1L--NCL	7	0	LAS1L	13911	chrX:64737973:-	NCL	24363	chr2:232326389:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0651	TRUE	0	0	0	3	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	5	0	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	34474	chr5:151646826:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0465	0	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0465	TRUE	0	2	0	2	2	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAS1L--NCL	5	0	LAS1L	13887	chrX:64737997:-	NCL	25264	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0465	TRUE	0	0	0	3	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAS1L--NCL	5	0	LAS1L	13890	chrX:64737994:-	NCL	25276	chr2:232325476:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0465	TRUE	0	0	0	3	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B2M--TSTA3	2	0	B2M	1137	chr15:45003811:+	TSTA3	11241	chr8:144698893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,TSTA3->chr8:144694788-144700218:-,tissue_specific_transplantation_antigen_P35B	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNAI2--YY1AP1	2	0	GNAI2	7094	chr3:50273885:+	YY1AP1	22396	chr1:155649303:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+,YY1AP1->YY1_associated_protein_1,chr1:155629237-155658791:-	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MCM5--KAT2A	2	0	MCM5	18815	chr22:35819334:+	KAT2A	26860	chr17:40270421:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	MCM5->Oncogene{Bushman},chr22:35796056-35821423:+,minichromosome_maintenance_complex_component_5,KAT2A->chr17:40265126-40273376:-,lysine_acetyltransferase_2A	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000373
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	307	302	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	4	0	0.99	1	3.9075	3.8439	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	7.7514	TRUE	0	2	1	16	2	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMP2K--FRAS1	200	15	BMP2K	1380	chr4:79697875:+	FRAS1	110355	chr4:79455603:+	ONLY_REF_SPLICE	YES	7	5	0.97	0.98	2.5456	0.1909	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.98	2.7365	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--PHF12	174	58	FAM222B	5825	chr17:27117396:-	PHF12	30355	chr17:27241055:-	ONLY_REF_SPLICE	YES	16	31	0.94	0.88	2.2147	0.7382	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.94	2.9529	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXNC1--CRADD	106	55	PLXNC1	2311	chr12:94543809:+	CRADD	56741	chr12:94287826:+	ONLY_REF_SPLICE	YES	70	21	0.7	0.88	1.3492	0.7	PLXNC1->chr12:94542499-94701451:+,plexin_C1,CRADD->CASP2_and_RIPK1_domain_containing_adaptor_with_death_domain,chr12:94071151-94288616:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.88	2.0492	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLG1--UHRF1	79	61	DLG1	5122	chr3:197009550:-	UHRF1	47783	chr19:4929234:+	ONLY_REF_SPLICE	YES	31	149	0.82	0.48	1.0055	0.7764	DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.82	1.7819	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	5	297	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	4	0	0.99	1	0.0636	3.7802	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	3.8438	TRUE	0	2	1	16	2	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--AC104820.2	58	24	ITGA4	2116	chr2:182323044:+	AC104820.2	48720	chr2:182227414:+	ONLY_REF_SPLICE	YES	109	2	0.43	0.98	0.7382	0.3055	LOCAL_REARRANGEMENT:+:[57643],ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,AC104820.2->chr2:181966659-182264286:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.98	1.0437	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC27--RP11-488P3.1	56	25	CDC27	20923	chr17:45199810:-	RP11-488P3.1	29487	chr1:94219902:-	ONLY_REF_SPLICE	YES	151	0	0.35	1	0.7128	0.3182	CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-,RP11-488P3.1->chr1:94218480-94241000:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	1.031	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	47	29	ABL1	1510	chr9:133589842:+	BCR	40306	chr22:23632526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.5982	0.3691	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9673	TRUE	0	0	0	6	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--PHF12	44	5	FAM222B	2441	chr17:27169700:-	PHF12	30355	chr17:27241055:-	ONLY_REF_SPLICE	YES	1	31	0.98	0.61	0.56	0.0636	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.98	0.6236	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC2P3--NBEAP1	27	33	HERC2P3	14978	chr15:20657621:-	NBEAP1	33237	chr15:20876597:-	ONLY_REF_SPLICE	YES	1378	0	0.04	1	0.3437	0.42	HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3,NBEAP1->Oncogene{Bushman},chr15:20862967-20893737:-,neurobeachin_pseudogene_1	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.7637	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--AC104820.2	24	40	ITGA4	2116	chr2:182323044:+	AC104820.2	47584	chr2:182218935:+	ONLY_REF_SPLICE	YES	109	0	0.37	1	0.3055	0.5091	LOCAL_REARRANGEMENT:+:[57643],ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,AC104820.2->chr2:181966659-182264286:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	1	0.8146	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--GSDMC	32	7	CCDC26	2447	chr8:130587128:-	GSDMC	19378	chr8:130764393:-	ONLY_REF_SPLICE	YES	10	2	0.8	0.95	0.4073	0.0891	LOCAL_REARRANGEMENT:-:[67957],CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,GSDMC->chr8:130760442-130799134:-,gasdermin_C	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.95	0.4964	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC6A6--LSM3	12	74	SLC6A6	1280	chr3:14444355:+	LSM3	30553	chr3:14239536:+	ONLY_REF_SPLICE	NO	79	666	0.52	0.11	0.1527	0.9419	SLC6A6->chr3:14444076-14530857:+,solute_carrier_family_6_member_6,LSM3->LSM3_homolog,_U6_small_nuclear_RNA_and_mRNA_degradation_associated,chr3:14219858-14242619:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.52	1.0946	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SAMHD1--RBL1	24	13	SAMHD1	14148	chr20:35532560:-	RBL1	45547	chr20:35627332:-	ONLY_REF_SPLICE	YES	35	23	0.51	0.62	0.3055	0.1655	LOCAL_INVERSION:-:-,chr20:[44506],SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-,RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.62	0.471	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC57--CSNK1D	23	10	CCDC57	24489	chr17:80109436:-	CSNK1D	47164	chr17:80213453:-	ONLY_REF_SPLICE	YES	21	375	0.61	0.08	0.2927	0.1273	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[26193],CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.61	0.42	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP48--HSPG2	23	7	USP48	30242	chr1:22013684:-	HSPG2	58884	chr1:22190706:-	ONLY_REF_SPLICE	YES	134	15	0.18	0.67	0.2927	0.0891	LOCAL_REARRANGEMENT:-:[38639],USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48,HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.67	0.3818	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	16	14	CCDC26	6922	chr8:130365050:-	LINC00977	12110	chr8:130235615:-	INCL_NON_REF_SPLICE	YES	70	0	0.3	1	0.2036	0.1782	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.3818	TRUE	0	0	0	4	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--AC104820.2	8	42	ITGA4	2116	chr2:182323044:+	AC104820.2	45346	chr2:182205773:+	ONLY_REF_SPLICE	YES	109	0	0.31	1	0.1018	0.5346	LOCAL_REARRANGEMENT:+:[57643],ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,AC104820.2->chr2:181966659-182264286:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	0.6364	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMP2K--FRAS1	13	16	BMP2K	1412	chr4:79697907:+	FRAS1	110355	chr4:79455603:+	INCL_NON_REF_SPLICE	YES	27	5	0.52	0.85	0.1655	0.2036	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.85	0.3691	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	15	4	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	31250	chr5:151575002:+	ONLY_REF_SPLICE	YES	0	2	1	0.9	0.1909	0.0509	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2418	TRUE	0	1	0	2	1	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00534--DECR1	12	16	LINC00534	2350	chr8:91258498:+	DECR1	22646	chr8:91054956:+	ONLY_REF_SPLICE	YES	73	254	0.28	0.1	0.1527	0.2036	LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534,DECR1->2,4-dienoyl-CoA_reductase_1,_mitochondrial,chr8:91013633-91064320:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.28	0.3563	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXNC1--CRADD	1	56	PLXNC1	10187	chr12:94613939:+	CRADD	53830	chr12:94243746:+	ONLY_REF_SPLICE	YES	104	38	0.35	0.6	0.0127	0.7128	PLXNC1->chr12:94542499-94701451:+,plexin_C1,CRADD->CASP2_and_RIPK1_domain_containing_adaptor_with_death_domain,chr12:94071151-94288616:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.6	0.7255	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXNC1--CRADD	1	56	PLXNC1	4255	chr12:94551986:+	CRADD	56741	chr12:94287826:+	ONLY_REF_SPLICE	NO	73	21	0.44	0.73	0.0127	0.7128	PLXNC1->chr12:94542499-94701451:+,plexin_C1,CRADD->CASP2_and_RIPK1_domain_containing_adaptor_with_death_domain,chr12:94071151-94288616:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.73	0.7255	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	14	3	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	34474	chr5:151646826:+	ONLY_REF_SPLICE	YES	0	27	1	0.39	0.1782	0.0382	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.2164	TRUE	0	2	0	2	2	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXNC1--RP11-1060G2.2	14	3	PLXNC1	2311	chr12:94543809:+	RP11-1060G2.2	44127	chr12:94340839:+	INCL_NON_REF_SPLICE	YES	70	12	0.2	0.59	0.1782	0.0382	PLXNC1->chr12:94542499-94701451:+,plexin_C1,RP11-1060G2.2->chr12:94338817-94341589:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.59	0.2164	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--PHF12	9	20	FAM222B	3499	chr17:27161311:-	PHF12	30355	chr17:27241055:-	ONLY_REF_SPLICE	YES	3	31	0.91	0.48	0.1146	0.2546	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.91	0.3692	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--AC104820.2	2	40	ITGA4	2116	chr2:182323044:+	AC104820.2	46430	chr2:182206885:+	ONLY_REF_SPLICE	YES	109	0	0.28	1	0.0255	0.5091	LOCAL_REARRANGEMENT:+:[57643],ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,AC104820.2->chr2:181966659-182264286:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.5346	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNMT3A--DTNB	9	0	DNMT3A	1765	chr2:25564695:-	DTNB	42221	chr2:25754466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1146	0	LOCAL_REARRANGEMENT:-:[34608],DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-,DTNB->chr2:25600067-25896503:-,dystrobrevin_beta	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1146	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCTD21--GAB2	9	0	KCTD21	1250	chr11:77899619:-	GAB2	17492	chr11:77991947:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1146	0	LOCAL_REARRANGEMENT:-:[26475],KCTD21->chr11:77882295-77899868:-,potassium_channel_tetramerization_domain_containing_21,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1146	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--PHF12	2	26	FAM222B	4726	chr17:27139227:-	PHF12	30355	chr17:27241055:-	ONLY_REF_SPLICE	YES	11	31	0.72	0.47	0.0255	0.3309	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.72	0.3564	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMP2K--FRAS1	1	16	BMP2K	18691	chr4:79808438:+	FRAS1	87264	chr4:79391132:+	ONLY_REF_SPLICE	YES	108	2	0.14	0.89	0.0127	0.2036	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.89	0.2163	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00534--DECR1	1	16	LINC00534	2350	chr8:91258498:+	DECR1	15014	chr8:91029352:+	ONLY_REF_SPLICE	YES	73	47	0.19	0.27	0.0127	0.2036	LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534,DECR1->2,4-dienoyl-CoA_reductase_1,_mitochondrial,chr8:91013633-91064320:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.27	0.2163	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXNC1--RP11-1060G2.2	4	4	PLXNC1	26963	chr12:94659001:+	RP11-1060G2.2	44127	chr12:94340839:+	INCL_NON_REF_SPLICE	YES	66	12	0.11	0.4	0.0509	0.0509	PLXNC1->chr12:94542499-94701451:+,plexin_C1,RP11-1060G2.2->chr12:94338817-94341589:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.4	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WASF3--XPO4	5	0	WASF3	1117	chr13:27131956:+	XPO4	21840	chr13:21437262:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0636	0	WASF3->WAS_protein_family_member_3,chr13:27131840-27263085:+,XPO4->chr13:21351469-21477187:-,exportin_4	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0636	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	5	CCDC26	6922	chr8:130365050:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	70	16	0.1	0.33	0.0382	0.0636	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.33	0.1018	TRUE	0	0	0	6	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SIGLEC12--CIB3	4	1	SIGLEC12	4772	chr19:52001272:-	CIB3	15204	chr19:16272297:-	ONLY_REF_SPLICE	YES	94	0	0.05	1	0.0509	0.0127	SIGLEC12->chr19:51994611-52005043:-,sialic_acid_binding_Ig_like_lectin_12_(gene/pseudogene),CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0636	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	3	4	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	30533	chr5:151574285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0.0509	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0891	TRUE	0	1	0	2	1	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2A--FTL	4	0	PRRC2A	7323	chr6:31595650:+	FTL	20243	chr19:49468579:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-857K21.7--MTND2P28	3	3	RP5-857K21.7	1231	chr1:568367:+	MTND2P28	4713	chr1:565050:+	INCL_NON_REF_SPLICE	YES	103	0	0.06	1	0.0382	0.0382	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0764	TRUE	1	0	0	3	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--AC104820.2	3	2	ITGA4	2116	chr2:182323044:+	AC104820.2	49952	chr2:182263106:+	ONLY_REF_SPLICE	YES	109	5	0.04	0.5	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[57643],ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,AC104820.2->chr2:181966659-182264286:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.5	0.0637	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--GSDMC	1	7	CCDC26	2447	chr8:130587128:-	GSDMC	19634	chr8:130764137:-	ONLY_REF_SPLICE	YES	10	1	0.44	0.89	0.0127	0.0891	LOCAL_REARRANGEMENT:-:[67957],CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,GSDMC->chr8:130760442-130799134:-,gasdermin_C	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.89	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	2	1	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	10	16	0.23	0.16	0.0255	0.0127	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.23	0.0382	TRUE	0	2	0	11	2	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAMK1D--CDC123	2	0	CAMK1D	1429	chr10:12391909:+	CDC123	26630	chr10:12257739:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Blood=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Whole_Blood=3},LOCAL_REARRANGEMENT:+:[98893],CAMK1D->calcium/calmodulin_dependent_protein_kinase_ID,chr10:12391481-12877545:+,CDC123->cell_division_cycle_123,chr10:12237964-12292588:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC1--PPIB	2	0	HERC1	1116	chr15:64126026:-	PPIB	91577	chr15:64449108:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,PPIB->chr15:64448011-64455404:-,peptidylprolyl_isomerase_B	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LDHB--GNAS	2	0	LDHB	3396	chr12:21810685:-	GNAS	40398	chr20:57484405:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	LDHB->chr12:21788276-21910791:-,lactate_dehydrogenase_B,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--MYC	2	0	PVT1	8346	chr8:128903244:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	TRUE	0	5	0	7	2	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	1	3	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	32340	chr5:151596635:+	ONLY_REF_SPLICE	YES	0	24	1	0.14	0.0127	0.0382	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	1	3	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	33437	chr5:151610824:+	ONLY_REF_SPLICE	YES	0	27	1	0.13	0.0127	0.0382	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SIGLEC12--CIB3	1	3	SIGLEC12	5441	chr19:52000603:-	CIB3	15204	chr19:16272297:-	ONLY_REF_SPLICE	YES	86	0	0.04	1	0.0127	0.0382	SIGLEC12->chr19:51994611-52005043:-,sialic_acid_binding_Ig_like_lectin_12_(gene/pseudogene),CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00534--NECAB1	1	1	LINC00534	6170	chr8:91466751:+	NECAB1	11791	chr8:91813919:+	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0127	0.0127	LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534,NECAB1->N-terminal_EF-hand_calcium_binding_protein_1,chr8:91803778-91971636:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000072
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2D--IQGAP3	173	23	MEF2D	1343	chr1:156470278:-	IQGAP3	31092	chr1:156521887:-	ONLY_REF_SPLICE	YES	47	18	0.81	0.92	1.4283	0.1899	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.92	1.6182	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO5A--DYM	120	26	MYO5A	1271	chr15:52820977:-	DYM	84734	chr18:46645296:-	ONLY_REF_SPLICE	YES	4	56	0.97	0.72	0.9907	0.2147	MYO5A->chr15:52599480-52821247:-,myosin_VA,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.97	1.2054	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC31A--PPIA	102	48	SEC31A	37749	chr4:83742190:-	PPIA	42353	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	134	0	0.53	1	0.8421	0.3963	SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	1	1.2384	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT2B--IQSEC1	110	15	KAT2B	2885	chr3:20113951:+	IQSEC1	35790	chr3:12963742:-	ONLY_REF_SPLICE	YES	14	34	0.9	0.79	0.9082	0.1238	KAT2B->chr3:20081515-20195896:+,lysine_acetyltransferase_2B,IQSEC1->IQ_motif_and_Sec7_domain_1,chr3:12938719-13114617:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	0.9	1.032	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--CACNA1A	88	15	FOXK2	10797	chr17:80544076:+	CACNA1A	63096	chr19:13356079:-	ONLY_REF_SPLICE	YES	110	0	0.48	1	0.7265	0.1238	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.8503	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVRAG--AP000462.2	81	19	UVRAG	16943	chr11:75715133:+	AP000462.2	32442	chr11:115247900:+	ONLY_REF_SPLICE	YES	17	0	0.85	1	0.6687	0.1569	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,AP000462.2->chr11:115234348-115248649:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.8256	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGEF11--PLEKHM2	80	22	ARHGEF11	2072	chr1:157014091:-	PLEKHM2	41739	chr1:16042732:+	ONLY_REF_SPLICE	YES	29	7	0.78	0.94	0.6605	0.1816	ARHGEF11->Rho_guanine_nucleotide_exchange_factor_11,chr1:156904632-157015162:-,PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.94	0.8421	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ROCK2--NTSR2	77	24	ROCK2	2753	chr2:11484122:-	NTSR2	42078	chr2:11798848:-	ONLY_REF_SPLICE	YES	28	6	0.78	0.94	0.6357	0.1981	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,NTSR2->chr2:11798304-11810290:-,neurotensin_receptor_2	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.94	0.8338	TRUE	0	1	0	1	1	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLEKHM2--ARHGEF11	60	13	PLEKHM2	11253	chr1:16055685:+	ARHGEF11	21837	chr1:156955965:-	ONLY_REF_SPLICE	YES	59	26	0.55	0.74	0.4954	0.1073	PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2,ARHGEF11->Rho_guanine_nucleotide_exchange_factor_11,chr1:156904632-157015162:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.74	0.6027	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2K--PDS5A	44	19	UBE2K	4583	chr4:39757359:+	PDS5A	33258	chr4:39891984:-	ONLY_REF_SPLICE	YES	127	147	0.33	0.3	0.3633	0.1569	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Hippocampus=1,Heart_-_Atrial_Appendage=1},{Klijn_CCL:Lymphoid=1},LOCAL_INVERSION:+:-:[40071],UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.33	0.5202	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-660H19.1--RP11-145M4.3	32	10	RP4-660H19.1	2425	chr1:73316433:-	RP11-145M4.3	10224	chr1:59553687:+	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.2642	0.0826	RP4-660H19.1->chr1:73214604-73364823:-,RP11-145M4.3->chr1:59522315-59553867:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.3468	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTOR--EPGN	33	5	MTOR	26879	chr1:11259315:-	EPGN	60764	chr4:75177902:+	ONLY_REF_SPLICE	YES	21	0	0.64	1	0.2724	0.0413	MTOR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:11166592-11322564:-,mechanistic_target_of_rapamycin,EPGN->chr4:75174190-75181024:+,epithelial_mitogen	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.3137	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2D--IQGAP3	27	25	MEF2D	1343	chr1:156470278:-	IQGAP3	28773	chr1:156526485:-	ONLY_REF_SPLICE	YES	47	5	0.53	0.91	0.2229	0.2064	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.91	0.4293	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ROCK2--NTSR2	23	32	ROCK2	2753	chr2:11484122:-	NTSR2	39713	chr2:11802366:-	ONLY_REF_SPLICE	YES	28	0	0.66	1	0.1899	0.2642	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,NTSR2->chr2:11798304-11810290:-,neurotensin_receptor_2	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	1	0.4541	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLBP--LETM1	25	8	SLBP	4315	chr4:1701291:-	LETM1	23128	chr4:1827410:-	ONLY_REF_SPLICE	YES	318	142	0.09	0.19	0.2064	0.066	LOCAL_REARRANGEMENT:-:[98924],SLBP->chr4:1694527-1714282:-,stem-loop_binding_protein,LETM1->chr4:1813206-1857974:-,leucine_zipper_and_EF-hand_containing_transmembrane_protein_1	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.19	0.2724	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC31A--PPIA	11	57	SEC31A	39396	chr4:83739760:-	PPIA	42343	chr7:44836279:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0908	0.4706	SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5614	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ROCK2--NTSR2	17	29	ROCK2	2753	chr2:11484122:-	NTSR2	40987	chr2:11800259:-	ONLY_REF_SPLICE	YES	28	5	0.62	0.9	0.1404	0.2394	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,NTSR2->chr2:11798304-11810290:-,neurotensin_receptor_2	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.9	0.3798	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TET3--ALMS1	22	1	TET3	7038	chr2:74307718:+	ALMS1	32608	chr2:73675090:+	ONLY_REF_SPLICE	YES	13	12	0.64	0.66	0.1816	0.0083	TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,ALMS1->ALMS1,_centrosome_and_basal_body_associated_protein,chr2:73612886-73837920:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.66	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADI1--GPC5	18	9	ADI1	1369	chr2:3523139:-	GPC5	23455	chr13:93518535:+	ONLY_REF_SPLICE	YES	392	0	0.06	1	0.1486	0.0743	ADI1->acireductone_dioxygenase_1,chr2:3501132-3523507:-,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.2229	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYM--MYO5A	19	4	DYM	28693	chr18:46690055:-	MYO5A	41410	chr15:52725482:-	ONLY_REF_SPLICE	YES	56	8	0.29	0.74	0.1569	0.033	DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin,MYO5A->chr15:52599480-52821247:-,myosin_VA	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.74	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP32--PTRH2	19	4	USP32	4918	chr17:58422842:-	PTRH2	50711	chr17:57775339:-	ONLY_REF_SPLICE	YES	11	16	0.68	0.59	0.1569	0.033	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.68	0.1899	TRUE	0	0	0	2	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf159--AC004041.2	18	5	C14orf159	4606	chr14:91581338:+	AC004041.2	39567	chr5:131977974:-	ONLY_REF_SPLICE	YES	55	0	0.29	1	0.1486	0.0413	C14orf159->chr14:91526677-91691976:+,chromosome_14_open_reading_frame_159,AC004041.2->chr5:131966281-131999964:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2D--IQGAP3	12	27	MEF2D	2397	chr1:156469224:-	IQGAP3	28773	chr1:156526485:-	ONLY_REF_SPLICE	YES	66	5	0.37	0.89	0.0991	0.2229	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.89	0.322	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC31A--PPIA	5	50	SEC31A	38861	chr4:83740295:-	PPIA	42353	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	133	0	0.29	1	0.0413	0.4128	SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.4541	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALMS1--TET3	15	0	ALMS1	8543	chr2:73659419:+	TET3	46525	chr2:74307625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1238	0	ALMS1->ALMS1,_centrosome_and_basal_body_associated_protein,chr2:73612886-73837920:+,TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1238	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2D--IQGAP3	8	25	MEF2D	2397	chr1:156469224:-	IQGAP3	31092	chr1:156521887:-	ONLY_REF_SPLICE	YES	66	18	0.33	0.65	0.066	0.2064	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.65	0.2724	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND1B--CD46	13	4	DENND1B	7107	chr1:197684161:-	CD46	41298	chr1:207930359:+	ONLY_REF_SPLICE	YES	0	326	1	0.05	0.1073	0.033	DENND1B->DENN_domain_containing_1B,chr1:197473878-197744826:-,CD46->CD46_molecule,Oncogene{Bushman},chr1:207925402-207968858:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.1403	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO5A--DYM	11	9	MYO5A	1271	chr15:52820977:-	DYM	88190	chr18:46623885:-	ONLY_REF_SPLICE	YES	4	93	0.83	0.18	0.0908	0.0743	MYO5A->chr15:52599480-52821247:-,myosin_VA,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.83	0.1651	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf159--AC004041.2	10	0	C14orf159	3895	chr14:91580627:+	AC004041.2	39567	chr5:131977974:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0826	0	C14orf159->chr14:91526677-91691976:+,chromosome_14_open_reading_frame_159,AC004041.2->chr5:131966281-131999964:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0826	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP10--NDUFC1	9	3	ARHGAP10	2624	chr4:148744108:+	NDUFC1	39981	chr4:140217114:-	ONLY_REF_SPLICE	YES	7	8	0.63	0.6	0.0743	0.0248	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.63	0.0991	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--FGF1	9	0	RFTN1	12839	chr3:16419225:-	FGF1	32124	chr5:141993726:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0743	0	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,FGF1->Oncogene{Bushman},chr5:141971743-142077617:-,fibroblast_growth_factor_1	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	METTL4--RP11-161I6.2	7	1	METTL4	7729	chr18:2552694:-	RP11-161I6.2	17059	chr18:2239879:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0578	0.0083	METTL4->chr18:2537524-2571508:-,methyltransferase_like_4,RP11-161I6.2->chr18:1883525-2240847:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2K--PDS5A	7	1	UBE2K	1347	chr4:39700010:+	PDS5A	33258	chr4:39891984:-	ONLY_REF_SPLICE	YES	36	147	0.18	0.05	0.0578	0.0083	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Hippocampus=1,Heart_-_Atrial_Appendage=1},{Klijn_CCL:Lymphoid=1},LOCAL_INVERSION:+:-:[40071],UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.18	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2D--IQGAP3	1	24	MEF2D	1343	chr1:156470278:-	IQGAP3	29934	chr1:156524184:-	ONLY_REF_SPLICE	YES	47	19	0.35	0.57	0.0083	0.1981	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.57	0.2064	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OXNAD1--AC005592.2	6	1	OXNAD1	10066	chr3:16345099:+	AC005592.2	29406	chr5:141961367:+	ONLY_REF_SPLICE	YES	21	0	0.25	1	0.0495	0.0083	OXNAD1->chr3:16306706-16391806:+,oxidoreductase_NAD_binding_domain_containing_1,AC005592.2->chr5:141704858-142051566:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1B--AC068535.4	6	0	RAP1B	15072	chr12:69053773:+	AC068535.4	19991	chr2:105121504:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,AC068535.4->chr2:105104916-105126967:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0495	TRUE	0	0	0	4	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf159--AC004041.2	4	3	C14orf159	4140	chr14:91580872:+	AC004041.2	39567	chr5:131977974:-	ONLY_REF_SPLICE	YES	46	0	0.13	1	0.033	0.0248	C14orf159->chr14:91526677-91691976:+,chromosome_14_open_reading_frame_159,AC004041.2->chr5:131966281-131999964:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-660H19.1--RP11-145M4.3	2	10	RP4-660H19.1	2425	chr1:73316433:-	RP11-145M4.3	9030	chr1:59552075:+	ONLY_REF_SPLICE	YES	3	2	0.8	0.86	0.0165	0.0826	RP4-660H19.1->chr1:73214604-73364823:-,RP11-145M4.3->chr1:59522315-59553867:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.86	0.0991	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-660H19.1--RP11-145M4.3	3	6	RP4-660H19.1	1374	chr1:73364450:-	RP11-145M4.3	10224	chr1:59553687:+	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0248	0.0495	RP4-660H19.1->chr1:73214604-73364823:-,RP11-145M4.3->chr1:59522315-59553867:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OXNAD1--AC005592.2	4	1	OXNAD1	10066	chr3:16345099:+	AC005592.2	28270	chr5:141909560:+	ONLY_REF_SPLICE	YES	21	0	0.19	1	0.033	0.0083	OXNAD1->chr3:16306706-16391806:+,oxidoreductase_NAD_binding_domain_containing_1,AC005592.2->chr5:141704858-142051566:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP10--NDUFC1	4	0	ARHGAP10	2624	chr4:148744108:+	NDUFC1	40795	chr4:140216300:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLEKHM2--ARHGEF11	2	7	PLEKHM2	10796	chr1:16055228:+	ARHGEF11	21837	chr1:156955965:-	ONLY_REF_SPLICE	YES	40	26	0.18	0.26	0.0165	0.0578	PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2,ARHGEF11->Rho_guanine_nucleotide_exchange_factor_11,chr1:156904632-157015162:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.26	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2374C24.1--RP11-6N13.1	3	0	CTD-2374C24.1	1068	chr5:104581998:-	RP11-6N13.1	22342	chr5:103820353:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	CTD-2374C24.1->chr5:104253193-104582065:-,RP11-6N13.1->chr5:103718999-104728671:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--CACNA1A	2	4	FOXK2	10797	chr17:80544076:+	CACNA1A	64180	chr19:13347432:-	ONLY_REF_SPLICE	YES	110	1	0.05	0.86	0.0165	0.033	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.86	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLEKHM2--ARHGEF11	2	3	PLEKHM2	10211	chr1:16054643:+	ARHGEF11	21837	chr1:156955965:-	ONLY_REF_SPLICE	YES	65	26	0.07	0.16	0.0165	0.0248	PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2,ARHGEF11->Rho_guanine_nucleotide_exchange_factor_11,chr1:156904632-157015162:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.16	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTOR--EPGN	2	2	MTOR	26596	chr1:11259598:-	EPGN	60764	chr4:75177902:+	ONLY_REF_SPLICE	NO	25	0	0.14	1	0.0165	0.0165	MTOR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:11166592-11322564:-,mechanistic_target_of_rapamycin,EPGN->chr4:75174190-75181024:+,epithelial_mitogen	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-660H19.1--RP11-145M4.3	1	6	RP4-660H19.1	1374	chr1:73364450:-	RP11-145M4.3	9030	chr1:59552075:+	ONLY_REF_SPLICE	YES	3	2	0.7	0.78	0.0083	0.0495	RP4-660H19.1->chr1:73214604-73364823:-,RP11-145M4.3->chr1:59522315-59553867:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.78	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL163953.3--SIPA1L1	2	1	AL163953.3	7654	chr14:53836219:+	SIPA1L1	17459	chr14:71880665:+	ONLY_REF_SPLICE	YES	1	5	0.75	0.38	0.0165	0.0083	AL163953.3->chr14:53635772-54153976:+,SIPA1L1->chr14:71787166-72207946:+,signal_induced_proliferation_associated_1_like_1	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.75	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP32--PTRH2	1	5	USP32	4918	chr17:58422842:-	PTRH2	48500	chr17:57777550:-	ONLY_REF_SPLICE	YES	11	9	0.35	0.4	0.0083	0.0413	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.4	0.0496	TRUE	0	0	0	2	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCSD1--DCAF6	2	0	RCSD1	1337	chr1:167599666:+	DCAF6	22963	chr1:167921038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0	RCSD1->RCSD_domain_containing_1,chr1:167599330-167675486:+,DCAF6->DDB1_and_CUL4_associated_factor_6,chr1:167905021-168045081:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--FGF1	2	0	RFTN1	12839	chr3:16419225:-	FGF1	33327	chr5:141980370:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,FGF1->Oncogene{Bushman},chr5:141971743-142077617:-,fibroblast_growth_factor_1	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-435B5.4--RPS14	2	0	RP11-435B5.4	2843	chr1:143465380:-	RPS14	22391	chr5:149826526:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0	RP11-435B5.4->chr1:143354963-143467632:-,RPS14->chr5:149822753-149829319:-,ribosomal_protein_S14	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CTBP1	2	0	YWHAE	1332	chr17:1303341:-	CTBP1	16917	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	TRUE	0	1	0	2	0	TRUE	ACH-000923
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIAM1--KCTD10	10	12	TIAM1	3104	chr21:32836296:-	KCTD10	43593	chr12:109907533:-	ONLY_REF_SPLICE	YES	13	1	0.63	0.96	0.1113	0.1335	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.96	0.2448	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIAM1--KCTD10	4	13	TIAM1	3171	chr21:32836229:-	KCTD10	43593	chr12:109907533:-	INCL_NON_REF_SPLICE	YES	9	1	0.65	0.94	0.0445	0.1446	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.94	0.1891	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNTN4--SSUH2	6	0	CNTN4	12473	chr3:2787381:+	SSUH2	61145	chr3:8677543:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0668	0	CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4,SSUH2->chr3:8661086-8786726:-,ssu-2_homolog_(C._elegans)	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIAM1--KCTD10	3	8	TIAM1	2051	chr21:32931240:-	KCTD10	43593	chr12:109907533:-	ONLY_REF_SPLICE	YES	10	1	0.52	0.92	0.0334	0.089	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.92	0.1224	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTA1--OR7G2	3	3	VTA1	7670	chr6:142525202:+	OR7G2	17910	chr19:9213935:-	INCL_NON_REF_SPLICE	YES	84	0	0.07	1	0.0334	0.0334	VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1,OR7G2->chr19:9212945-9213982:-,olfactory_receptor_family_7_subfamily_G_member_2	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B3GALNT2--MAP2K5	2	0	B3GALNT2	3612	chr1:235657991:-	MAP2K5	52898	chr15:68098984:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	B3GALNT2->beta-1,3-N-acetylgalactosaminyltransferase_2,chr1:235613238-235667781:-,MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ1A--CFL1	2	0	BAZ1A	2156	chr14:35343698:-	CFL1	41609	chr11:65623713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,CFL1->chr11:65590493-65629497:-,cofilin_1	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GCNT2--WDR43	2	0	GCNT2	6569	chr6:10529074:+	WDR43	38311	chr2:29159788:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group),WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1191--CANX	2	0	KIAA1191	1367	chr5:175788605:-	CANX	20784	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	KIAA1191->KIAA1191,chr5:175773064-175788971:-,CANX->calnexin,chr5:179105629-179157926:+	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTBP1--GFI1	2	0	PTBP1	1431	chr19:797505:+	GFI1	18316	chr1:92949143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1,GFI1->Oncogene{Bushman},chr1:92940319-92952433:-,growth_factor_independent_1_transcription_repressor	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--RBM39	2	0	SF1	3289	chr11:64543970:-	RBM39	32367	chr20:34301018:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBR5--AZIN1	2	0	UBR5	1669	chr8:103424401:-	AZIN1	63524	chr8:103870378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx&tcga_normals:1/3694=0.03%,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	4	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP47--FBXO3	2	0	USP47	7470	chr11:11913653:+	FBXO3	59623	chr11:33763630:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,FBXO3->F-box_protein_3,chr11:33762485-33796089:-	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VEPH1--OSER1	2	0	VEPH1	6165	chr3:157213001:-	OSER1	33731	chr20:42835638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	VEPH1->Oncogene{Bushman},chr3:156977531-157251408:-,ventricular_zone_expressed_PH_domain_containing_1,OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
ES2_OVARY	ACER3--CHKA	40	24	ACER3	1213	chr11:76572123:+	CHKA	33043	chr11:67838324:-	ONLY_REF_SPLICE	YES	23	12	0.74	0.84	0.3818	0.2291	ACER3->alkaline_ceramidase_3,chr11:76571911-76737841:+,CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-	ES2_OVARY	0.74	0.84	0.6109	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	GDPD5--ARHGAP42	35	14	GDPD5	1694	chr11:75236255:-	ARHGAP42	38227	chr11:100641074:+	ONLY_REF_SPLICE	YES	3	5	0.94	0.91	0.3341	0.1336	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+	ES2_OVARY	0.91	0.94	0.4677	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	YAP1--MAML2	29	14	YAP1	8159	chr11:102076805:+	MAML2	22480	chr11:95826681:-	ONLY_REF_SPLICE	YES	337	2	0.11	0.96	0.2768	0.1336	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	ES2_OVARY	0.11	0.96	0.4104	TRUE	0	1	0	2	1	TRUE	ACH-000906
ES2_OVARY	FAM76B--JRKL	25	8	FAM76B	5291	chr11:95519283:-	JRKL	22168	chr11:96240201:+	ONLY_REF_SPLICE	YES	15	0	0.69	1	0.2386	0.0764	FAM76B->chr11:95502106-95523573:-,family_with_sequence_similarity_76_member_B,JRKL->JRK-like,chr11:96123153-96240738:+	ES2_OVARY	0.69	1	0.315	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	PPP1R12A--RP1-78O14.1	19	6	PPP1R12A	1766	chr12:80328475:-	RP1-78O14.1	41348	chr12:79787705:-	ONLY_REF_SPLICE	YES	51	0	0.33	1	0.1814	0.0573	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	ES2_OVARY	0.33	1	0.2387	TRUE	0	0	0	2	0	TRUE	ACH-000906
ES2_OVARY	ZNF738--SMOC2	16	4	ZNF738	1214	chr19:21541945:+	SMOC2	14678	chr6:168910595:+	ONLY_REF_SPLICE	YES	15	0	0.57	1	0.1527	0.0382	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,SMOC2->SPARC_related_modular_calcium_binding_2,chr6:168841831-169073984:+	ES2_OVARY	0.57	1	0.1909	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	YAP1--MAML2	10	19	YAP1	9219	chr11:102080295:+	MAML2	22480	chr11:95826681:-	ONLY_REF_SPLICE	YES	401	2	0.07	0.94	0.0954	0.1814	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	ES2_OVARY	0.07	0.94	0.2768	TRUE	0	1	0	2	1	TRUE	ACH-000906
ES2_OVARY	YAP1--MAML2	5	19	YAP1	8171	chr11:102076817:+	MAML2	22480	chr11:95826681:-	ONLY_REF_SPLICE	YES	406	2	0.06	0.92	0.0477	0.1814	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	ES2_OVARY	0.06	0.92	0.2291	TRUE	0	1	0	2	1	TRUE	ACH-000906
ES2_OVARY	ACER3--CHKA	2	21	ACER3	1196	chr11:76572106:+	CHKA	33043	chr11:67838324:-	ONLY_REF_SPLICE	YES	21	12	0.52	0.66	0.0191	0.2004	ACER3->alkaline_ceramidase_3,chr11:76571911-76737841:+,CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-	ES2_OVARY	0.52	0.66	0.2195	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	ARHGAP42--ANKRD13D	7	1	ARHGAP42	1180	chr11:100558563:+	ANKRD13D	43996	chr11:67067001:+	ONLY_REF_SPLICE	YES	4	27	0.67	0.23	0.0668	0.0095	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,ANKRD13D->ankyrin_repeat_domain_13_family_member_D,chr11:67056018-67069956:+	ES2_OVARY	0.23	0.67	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	CNTN5--POLN	6	1	CNTN5	17790	chr11:99945026:+	POLN	56535	chr4:2133017:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0573	0.0095	CNTN5->chr11:98891683-100229616:+,contactin_5,POLN->chr4:2073645-2243848:-,polymerase_(DNA)_nu	ES2_OVARY	1	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	RABGAP1L--MACROD2	3	2	RABGAP1L	14961	chr1:174274265:+	MACROD2	66316	chr20:14830550:+	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0286	0.0191	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,MACROD2->MACRO_domain_containing_2,chr20:13976015-16033842:+	ES2_OVARY	0.28	1	0.0477	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	KIAA0556--XPO6	3	0	KIAA0556	5858	chr16:27642483:+	XPO6	57207	chr16:28157524:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	KIAA0556->KIAA0556,chr16:27561454-27791690:+,XPO6->chr16:28109300-28223241:-,exportin_6	ES2_OVARY	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	PPP1R12A--RP1-78O14.1	3	0	PPP1R12A	1766	chr12:80328475:-	RP1-78O14.1	43357	chr12:79735189:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	ES2_OVARY	1	1	0.0286	TRUE	0	0	0	2	0	TRUE	ACH-000906
ES2_OVARY	RABGAP1L--MACROD2	2	2	RABGAP1L	14961	chr1:174274265:+	MACROD2	67919	chr20:14868789:+	ONLY_REF_SPLICE	YES	13	0	0.24	1	0.0191	0.0191	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,MACROD2->MACRO_domain_containing_2,chr20:13976015-16033842:+	ES2_OVARY	0.24	1	0.0382	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	ARHGAP42--ANKRD13D	2	1	ARHGAP42	1180	chr11:100558563:+	ANKRD13D	43524	chr11:67066529:+	ONLY_REF_SPLICE	YES	4	28	0.43	0.1	0.0191	0.0095	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,ANKRD13D->ankyrin_repeat_domain_13_family_member_D,chr11:67056018-67069956:+	ES2_OVARY	0.1	0.43	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	FAM76B--RP11-49K4.2	2	0	FAM76B	5291	chr11:95519283:-	RP11-49K4.2	17537	chr11:96244092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	FAM76B->chr11:95502106-95523573:-,family_with_sequence_similarity_76_member_B,RP11-49K4.2->chr11:96241589-96247912:+	ES2_OVARY	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	GAS5--RPL3	2	0	GAS5	3355	chr1:173835666:-	RPL3	14377	chr22:39710851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding),RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	ES2_OVARY	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	GDI2--RAB10	2	0	GDI2	3440	chr10:5855177:-	RAB10	22430	chr2:26350013:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-,RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+	ES2_OVARY	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	U2AF1--PKNOX1	2	0	U2AF1	1137	chr21:44527561:-	PKNOX1	18796	chr21:44424436:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[59375],U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-,PKNOX1->Oncogene{Bushman},PBX/knotted_1_homeobox_1,chr21:44394620-44453691:+	ES2_OVARY	1	1	0.0191	TRUE	0	1	0	3	0	TRUE	ACH-000906
ES2_OVARY	UBE2K--FAM192A	2	0	UBE2K	1347	chr4:39700010:+	FAM192A	20786	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	ES2_OVARY	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	YAP1--MAML2	2	0	YAP1	4192	chr11:101985125:+	MAML2	25106	chr11:95724887:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	ES2_OVARY	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000906
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFS6--CTD-2589H19.4	30	5	NDUFS6	1975	chr5:1802488:+	CTD-2589H19.4	8093	chr5:769045:-	INCL_NON_REF_SPLICE	YES	384	0	0.08	1	0.2542	0.0424	NDUFS6->NADH:ubiquinone_oxidoreductase_subunit_S6,chr5:1801514-1816719:+,CTD-2589H19.4->chr5:767512-769046:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.2966	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDCA7--PTMA	3	0	CDCA7	1165	chr2:174219712:+	PTMA	17347	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	CDCA7->cell_division_cycle_associated_7,chr2:174219548-174233725:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK10--NAA50	3	0	CDK10	10791	chr16:89760542:+	NAA50	22810	chr3:113438875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10,NAA50->N(alpha)-acetyltransferase_50,_NatE_catalytic_subunit,chr3:113435307-113465147:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLECL1--KLRK1	3	0	CLECL1	1351	chr12:9885545:-	KLRK1	10914	chr12:10541474:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	CLECL1->C-type_lectin_like_1,chr12:9868456-9885895:-,KLRK1->Oncogene{Bushman},chr12:10524952-10544473:-,killer_cell_lectin_like_receptor_K1	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-273B12.8--UBTF	3	0	CTC-273B12.8	2587	chr19:48984690:+	UBTF	20674	chr17:42283325:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	CTC-273B12.8->chr19:48983104-48985571:+,UBTF->chr17:42282401-42298994:-,upstream_binding_transcription_factor,_RNA_polymerase_I	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOT1L--ZWILCH	3	0	DOT1L	15138	chr19:2210824:+	ZWILCH	57041	chr15:66840824:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,ZWILCH->chr15:66797297-66842115:+,zwilch_kinetochore_protein	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	E2F2--POLD2	3	0	E2F2	7419	chr1:23842911:-	POLD2	20848	chr7:44155803:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	E2F2->E2F_transcription_factor_2,Oncogene{Bushman},chr1:23832922-23857712:-,POLD2->chr7:44154286-44163957:-,polymerase_(DNA)_delta_2,_accessory_subunit	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R13B--MARK3	3	0	PPP1R13B	1292	chr14:104313636:-	MARK3	52962	chr14:103958114:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},PPP1R13B->chr14:104200089-104313927:-,protein_phosphatase_1_regulatory_subunit_13B,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-832N8.1--PTMA	3	0	RP11-832N8.1	1033	chr11:107779178:+	PTMA	5991	chr2:232573250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	RP11-832N8.1->chr11:107779146-107779490:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABCA11P--DAZAP1	2	0	ABCA11P	1149	chr4:467770:-	DAZAP1	14041	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ABCA11P->ATP_binding_cassette_subfamily_A_member_11,_pseudogene,chr4:419224-467918:-,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--PAX5	2	0	ABL1	1510	chr9:133589842:+	PAX5	22115	chr9:37015191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,PAX5->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:36833272-37034103:-,paired_box_5	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATAD2--DERL1	2	0	ATAD2	3815	chr8:124408427:-	DERL1	36240	chr8:124042956:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,DERL1->chr8:124025404-124054663:-,derlin_1	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2L11--NFYB	2	0	BCL2L11	2467	chr2:111878765:+	NFYB	25384	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	BCL2L11->BCL2_like_11,Oncogene{Bushman},chr2:111876955-111926024:+,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CACYBP--DHX9	2	0	CACYBP	2032	chr1:174969331:+	DHX9	16028	chr1:182821368:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	CACYBP->calcyclin_binding_protein,chr1:174968300-174980851:+,DHX9->DEAH-box_helicase_9,Oncogene{Bushman},chr1:182808504-182856886:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC84--ARID1A	2	0	CCDC84	1968	chr11:118869819:+	ARID1A	33003	chr1:27105514:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	CCDC84->chr11:118868852-118886501:+,coiled-coil_domain_containing_84,ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCT2--CCDC14	2	0	CCT2	3929	chr12:69982042:+	CCDC14	20166	chr3:123674962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC27--HNRNPH1	2	0	CDC27	2753	chr17:45258928:-	HNRNPH1	39842	chr5:179041960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT2--NUDT5	2	0	CNOT2	1487	chr12:70637260:+	NUDT5	36625	chr10:12228331:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,NUDT5->chr10:12207324-12238143:-,nudix_hydrolase_5	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR3--DYRK1A	2	0	DSCR3	1724	chr21:38639539:-	DYRK1A	29194	chr21:38844986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	LOCAL_INVERSION:-:+:[97830],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DUS2--UBE2D2	2	0	DUS2	6781	chr16:68059397:+	UBE2D2	29799	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	DUS2->chr16:68021649-68113223:+,dihydrouridine_synthase_2,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EBF1--CYFIP2	2	0	EBF1	6894	chr5:158500404:-	CYFIP2	30915	chr5:156712349:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,CYFIP2->chr5:156693089-156822606:+,cytoplasmic_FMR1_interacting_protein_2	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1G--ZFAND2A	2	0	EEF1G	1948	chr11:62341454:-	ZFAND2A	13339	chr7:1197893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma,ZFAND2A->chr7:1191707-1200395:-,zinc_finger_AN1-type_containing_2A	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELMO1--GUSBP2	2	0	ELMO1	1575	chr7:37488278:-	GUSBP2	47312	chr6:26856976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ETF1--RQCD1	2	0	ETF1	1468	chr5:137878522:-	RQCD1	19896	chr2:219445284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1,RQCD1->chr2:219433303-219461803:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNG7--PAXIP1	2	0	GNG7	2276	chr19:2683478:-	PAXIP1	18567	chr7:154790494:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GNG7->G_protein_subunit_gamma_7,chr19:2511217-2702707:-,PAXIP1->PAX_interacting_protein_1,chr7:154735397-154794794:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMGN2--SRSF11	2	0	HMGN2	1178	chr1:26799118:+	SRSF11	8868	chr1:70687298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPA2B1--TTC1	2	0	HNRNPA2B1	1958	chr7:26240192:-	TTC1	17027	chr5:159462147:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,TTC1->chr5:159436120-159492550:+,tetratricopeptide_repeat_domain_1	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--NSMCE1	2	0	IL4R	1353	chr16:27325341:+	NSMCE1	28261	chr16:27268902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	LOCAL_INVERSION:+:-:[44874],IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,NSMCE1->NSE1_homolog,_SMC5-SMC6_complex_component,chr16:27236312-27280115:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	1	0	1	1	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KPNA3--IGJ	2	0	KPNA3	2529	chr13:50321085:-	IGJ	20630	chr4:71532231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	KPNA3->chr13:50273447-50367057:-,karyopherin_subunit_alpha_3,IGJ->chr4:71521258-71547534:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBP--ARHGEF7	2	0	MBP	5877	chr18:74817167:-	ARHGEF7	51142	chr13:111896219:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx&tcga_normals:1/3694=0.03%,MBP->chr18:74690783-74845639:-,myelin_basic_protein,ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTG1--CARHSP1	2	0	MTG1	7895	chr10:135216277:+	CARHSP1	18662	chr16:8953192:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	MTG1->chr10:135207598-135234811:+,mitochondrial_ribosome_associated_GTPase_1,CARHSP1->calcium_regulated_heat_stable_protein_1,chr16:8946799-8962866:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOA3--PHTF1	2	0	NCOA3	1163	chr20:46130763:+	PHTF1	30288	chr1:114301355:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,PHTF1->chr1:114239453-114302111:-,putative_homeodomain_transcription_factor_1	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NHSL1--DCAF8	2	0	NHSL1	8956	chr6:138794443:-	DCAF8	32049	chr1:160231148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	NHSL1->NHS_like_1,chr6:138743180-139013708:-,DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOP56--KANSL2	2	0	NOP56	2249	chr20:2634039:+	KANSL2	21732	chr12:49048843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	NOP56->NOP56_ribonucleoprotein,chr20:2632791-2639039:+,KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCM1--SMDT1	2	0	PCM1	2417	chr8:17782289:+	SMDT1	52428	chr22:42479123:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1,SMDT1->chr22:42475695-42480288:+,single-pass_membrane_protein_with_aspartate-rich_tail_1	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHF20--RBM39	2	0	PHF20	4583	chr20:34389527:+	RBM39	47544	chr20:34309799:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[29662],PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2J--PHF20	2	0	POLR2J	3365	chr7:102114808:-	PHF20	9997	chr20:34388016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	POLR2J->chr7:102113565-102119354:-,polymerase_(RNA)_II_subunit_J,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMD2--BUB3	2	0	PSMD2	3950	chr3:184019446:+	BUB3	14612	chr10:124914434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	PSMD2->Oncogene{Bushman},chr3:184016497-184026842:+,proteasome_26S_subunit,_non-ATPase_2,BUB3->BUB3,_mitotic_checkpoint_protein,chr10:124913793-124924886:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-689B22.2--ATP2A2	2	0	RP11-689B22.2	3762	chr12:109030231:+	ATP2A2	14100	chr12:110760797:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	RP11-689B22.2->chr12:109022463-109035094:+,ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS12--LARS	2	0	RPS12	2887	chr6:133137702:+	LARS	22709	chr5:145523912:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4IP1--ARID1B	2	0	RTN4IP1	2903	chr6:107070693:-	ARID1B	22372	chr6:157256600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	RTN4IP1->Oncogene{Bushman},chr6:107018903-107077373:-,reticulon_4_interacting_protein_1,ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STMN1--SMIM14	2	0	STMN1	3328	chr1:26231155:-	SMIM14	17747	chr4:39606800:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	STMN1->chr1:26210672-26233482:-,stathmin_1,SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBK1--OAZ2	2	0	TBK1	2877	chr12:64849737:+	OAZ2	32885	chr15:64981368:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,OAZ2->chr15:64979772-64995480:-,ornithine_decarboxylase_antizyme_2	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM258--ATM	2	0	TMEM258	3310	chr11:61557965:-	ATM	69809	chr11:108200941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	TMEM258->chr11:61535973-61560274:-,transmembrane_protein_258,ATM->ATM_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:108093211-108239829:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMX2--TRPM7	2	0	TMX2	3861	chr11:57506732:+	TRPM7	39536	chr15:50878685:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,TRPM7->chr15:50844670-50979012:-,transient_receptor_potential_cation_channel_subfamily_M_member_7	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPD52--HOOK3	2	0	TPD52	6214	chr8:81083660:-	HOOK3	30642	chr8:42761316:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTBK2--PRRC2C	2	0	TTBK2	4247	chr15:43170747:-	PRRC2C	71130	chr1:171557518:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	TTBK2->chr15:43030932-43213007:-,tau_tubulin_kinase_2,PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF101--INTS2	2	0	ZNF101	1171	chr19:19779775:+	INTS2	16355	chr17:60002460:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ZNF101->chr19:19779605-19794318:+,zinc_finger_protein_101,INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF468--CNOT11	2	0	ZNF468	4096	chr19:53352340:-	CNOT11	18516	chr2:101881307:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ZNF468->chr19:53341261-53360902:-,zinc_finger_protein_468,CNOT11->CCR4-NOT_transcription_complex_subunit_11,chr2:101869264-101886778:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZRANB3--DCUN1D5	2	0	ZRANB3	2907	chr2:136261899:-	DCUN1D5	44535	chr11:102937296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3,DCUN1D5->chr11:102932805-102962944:-,defective_in_cullin_neddylation_1_domain_containing_5	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
SNU449_LIVER	RP11-435B5.4--OSER1-AS1	86	44	RP11-435B5.4	2843	chr1:143465380:-	OSER1-AS1	24529	chr20:42853461:+	ONLY_REF_SPLICE	YES	2	19	0.98	0.87	0.8146	0.4168	RP11-435B5.4->chr1:143354963-143467632:-,OSER1-AS1->OSER1_antisense_RNA_1_(head_to_head),chr20:42839600-42854667:+	SNU449_LIVER	0.87	0.98	1.2314	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	RP11-435B5.4--OSER1-AS1	16	47	RP11-435B5.4	2843	chr1:143465380:-	OSER1-AS1	22111	chr20:42846007:+	ONLY_REF_SPLICE	YES	2	18	0.97	0.78	0.1516	0.4452	RP11-435B5.4->chr1:143354963-143467632:-,OSER1-AS1->OSER1_antisense_RNA_1_(head_to_head),chr20:42839600-42854667:+	SNU449_LIVER	0.78	0.97	0.5968	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	HELLS--EYS	21	12	HELLS	1709	chr10:96306255:+	EYS	80034	chr6:64791895:-	ONLY_REF_SPLICE	YES	103	0	0.24	1	0.1989	0.1137	HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,EYS->chr6:64429876-66417118:-,eyes_shut_homolog_(Drosophila)	SNU449_LIVER	0.24	1	0.3126	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	RP11-435B5.4--OSER1-AS1	1	44	RP11-435B5.4	2843	chr1:143465380:-	OSER1-AS1	23427	chr20:42852359:+	ONLY_REF_SPLICE	NO	2	23	0.96	0.66	0.0095	0.4168	RP11-435B5.4->chr1:143354963-143467632:-,OSER1-AS1->OSER1_antisense_RNA_1_(head_to_head),chr20:42839600-42854667:+	SNU449_LIVER	0.66	0.96	0.4263	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	GATAD2A--RP11-678G14.3	9	2	GATAD2A	9305	chr19:19576423:+	RP11-678G14.3	27312	chr19:21754341:-	ONLY_REF_SPLICE	YES	118	0	0.09	1	0.0853	0.0189	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,RP11-678G14.3->chr19:21753624-21770124:-	SNU449_LIVER	0.09	1	0.1042	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	ARMC4--RP11-748L13.2	8	2	ARMC4	13214	chr10:28250497:-	RP11-748L13.2	42094	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0758	0.0189	ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-,RP11-748L13.2->chr10:27620286-27630181:-	SNU449_LIVER	1	1	0.0947	TRUE	0	6	2	1	6	TRUE	ACH-000420
SNU449_LIVER	CD99L2--ZNF280C	4	0	CD99L2	9528	chrX:149962164:-	ZNF280C	20807	chrX:129394439:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	CD99L2->CD99_molecule_like_2,chrX:149934810-150067289:-,ZNF280C->chrX:129336685-129402873:-,zinc_finger_protein_280C	SNU449_LIVER	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	VIM--TMSB4X	4	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU449_LIVER	1	1	0.0379	TRUE	0	0	0	15	0	TRUE	ACH-000420
SNU449_LIVER	HDX--ABCD1	3	2	HDX	6553	chrX:83695540:-	ABCD1	29397	chrX:153008441:+	ONLY_REF_SPLICE	YES	16	10	0.24	0.33	0.0284	0.0189	HDX->chrX:83572882-83757487:-,highly_divergent_homeobox,ABCD1->ATP_binding_cassette_subfamily_D_member_1,chrX:152990323-153010216:+	SNU449_LIVER	0.24	0.33	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	VIM--CYR61	3	0	VIM	2081	chr10:17271338:+	CYR61	12321	chr1:86046560:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,VIM->chr10:17270258-17279592:+,vimentin,CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61	SNU449_LIVER	1	1	0.0284	TRUE	0	0	0	2	0	TRUE	ACH-000420
SNU449_LIVER	HDX--ABCD1	2	2	HDX	5499	chrX:83723480:-	ABCD1	29397	chrX:153008441:+	ONLY_REF_SPLICE	YES	17	10	0.19	0.29	0.0189	0.0189	HDX->chrX:83572882-83757487:-,highly_divergent_homeobox,ABCD1->ATP_binding_cassette_subfamily_D_member_1,chrX:152990323-153010216:+	SNU449_LIVER	0.19	0.29	0.0378	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	HELLS--EYS	1	4	HELLS	1709	chr10:96306255:+	EYS	81181	chr6:64776384:-	ONLY_REF_SPLICE	NO	103	2	0.05	0.71	0.0095	0.0379	HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,EYS->chr6:64429876-66417118:-,eyes_shut_homolog_(Drosophila)	SNU449_LIVER	0.05	0.71	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	ZNF280D--PICALM	2	0	ZNF280D	2032	chr15:57209738:-	PICALM	51815	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ZNF280D->chr15:56922379-57210769:-,zinc_finger_protein_280D,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	SNU449_LIVER	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	HDX--ABCD1	1	1	HDX	2247	chrX:83743032:-	ABCD1	29397	chrX:153008441:+	ONLY_REF_SPLICE	YES	8	10	0.2	0.17	0.0095	0.0095	HDX->chrX:83572882-83757487:-,highly_divergent_homeobox,ABCD1->ATP_binding_cassette_subfamily_D_member_1,chrX:152990323-153010216:+	SNU449_LIVER	0.17	0.2	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	HDX--ABCD1	1	1	HDX	1138	chrX:83757350:-	ABCD1	29397	chrX:153008441:+	ONLY_REF_SPLICE	YES	3	10	0.4	0.17	0.0095	0.0095	HDX->chrX:83572882-83757487:-,highly_divergent_homeobox,ABCD1->ATP_binding_cassette_subfamily_D_member_1,chrX:152990323-153010216:+	SNU449_LIVER	0.17	0.4	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	MSH5--AIF1	1	1	MSH5	3633	chr6:31710947:+	AIF1	24171	chr6:31584121:+	ONLY_REF_SPLICE	YES	36	1	0.05	0.67	0.0095	0.0095	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,AIF1->allograft_inflammatory_factor_1,chr6:31582961-31584798:+	SNU449_LIVER	0.05	0.67	0.019	TRUE	0	0	0	2	0	TRUE	ACH-000420
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	ADI1--JUND	22	0	ADI1	1068	chr2:3523440:-	JUND	14746	chr19:18391078:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2444	0	GTEx&tcga_normals:1/3694=0.03%,ADI1->acireductone_dioxygenase_1,chr2:3501132-3523507:-,JUND->JunD_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr19:18390563-18392432:-	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.2444	TRUE	0	0	0	1	0	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	TBCA--SCAMP1	3	0	TBCA	2304	chr5:77072029:-	SCAMP1	15680	chr5:77684661:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Esophagus_-_Mucosa=1},TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	CHFR--CTBP1	2	0	CHFR	2239	chr12:133522207:-	CTBP1	38499	chr4:1232125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	CPSF6--TARDBP	2	0	CPSF6	11046	chr12:69656342:+	TARDBP	21253	chr1:11073773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TARDBP->TAR_DNA_binding_protein,chr1:11072414-11085796:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	DMTF1--EEF1D	2	0	DMTF1	2885	chr7:86783844:+	EEF1D	39798	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	DMTF1->Oncogene{Bushman},chr7:86781677-86825653:+,cyclin_D_binding_myb_like_transcription_factor_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	SNX5--DSTN	2	0	SNX5	1281	chr20:17949343:-	DSTN	24446	chr20:17581383:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5,DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0222	TRUE	0	0	0	2	0	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	TXNRD1--CHST11	2	0	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0222	TRUE	0	2	1	13	2	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	VWDE--PHF14	1	1	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	NO	3	61	0.4	0.03	0.0111	0.0111	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.03	0.4	0.0222	TRUE	0	6	0	17	2	TRUE	ACH-000961
HUH28_BILIARY_TRACT	FLNA--MYH9	877	3	FLNA	18618	chrX:153580048:-	MYH9	54988	chr22:36690200:-	INCL_NON_REF_SPLICE	YES	4993	1810	0.15	0.33	12.1527	0.0416	GTEx&tcga_normals:71/3694=1.92%,GTEx:1.22%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FLNA->chrX:153576892-153603006:-,filamin_A,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	HUH28_BILIARY_TRACT	0.15	0.33	12.1943	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	ADAMTS2--RP11-798K23.4	100	54	ADAMTS2	2636	chr5:178770768:-	RP11-798K23.4	32863	chr5:178930741:-	ONLY_REF_SPLICE	YES	127	0	0.55	1	1.3857	0.7483	GTEx_FI:{Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},ADAMTS2->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_2,chr5:178537852-178772431:-,RP11-798K23.4->chr5:178930323-178942580:-	HUH28_BILIARY_TRACT	0.55	1	2.134	TRUE	1	3	0	2	3	TRUE	ACH-000808
HUH28_BILIARY_TRACT	RASA2--ZBTB38	61	30	RASA2	1170	chr3:141206058:+	ZBTB38	33448	chr3:141087463:+	ONLY_REF_SPLICE	YES	6	3	0.94	0.97	0.8453	0.4157	YOSHIHARA_TCGA_num_samples[BLCA:1|LUAD:1],LOCAL_REARRANGEMENT:+:[37255],RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38	HUH28_BILIARY_TRACT	0.94	0.97	1.261	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	SPAG9--MBTD1	23	14	SPAG9	3704	chr17:49133773:-	MBTD1	55721	chr17:49284366:-	ONLY_REF_SPLICE	YES	53	10	0.41	0.79	0.3187	0.194	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[56560],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HUH28_BILIARY_TRACT	0.41	0.79	0.5127	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	GFPT1--NFU1	23	13	GFPT1	8751	chr2:69583628:-	NFU1	39166	chr2:69633214:-	ONLY_REF_SPLICE	YES	73	49	0.33	0.42	0.3187	0.1801	YOSHIHARA_TCGA_num_samples[KIRC:1|LUSC:1],LOCAL_REARRANGEMENT:-:[8500],GFPT1->chr2:69546905-69614382:-,glutamine--fructose-6-phosphate_transaminase_1,NFU1->NFU1_iron-sulfur_cluster_scaffold,chr2:69622882-69664760:-	HUH28_BILIARY_TRACT	0.33	0.42	0.4988	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	TTC37--CTNNA2	13	3	TTC37	7999	chr5:94876394:-	CTNNA2	76220	chr2:80620336:+	ONLY_REF_SPLICE	YES	47	0	0.25	1	0.1801	0.0416	TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,CTNNA2->catenin_alpha_2,chr2:79412357-80875905:+	HUH28_BILIARY_TRACT	0.25	1	0.2217	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	GFPT1--NFU1	8	8	GFPT1	8751	chr2:69583628:-	NFU1	40227	chr2:69627670:-	ONLY_REF_SPLICE	YES	73	46	0.18	0.26	0.1109	0.1109	YOSHIHARA_TCGA_num_samples[KIRC:1|LUSC:1],LOCAL_REARRANGEMENT:-:[8500],GFPT1->chr2:69546905-69614382:-,glutamine--fructose-6-phosphate_transaminase_1,NFU1->NFU1_iron-sulfur_cluster_scaffold,chr2:69622882-69664760:-	HUH28_BILIARY_TRACT	0.18	0.26	0.2218	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	TTC37--CTNNA2	7	6	TTC37	9098	chr5:94872747:-	CTNNA2	76220	chr2:80620336:+	ONLY_REF_SPLICE	YES	68	0	0.16	1	0.097	0.0831	TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,CTNNA2->catenin_alpha_2,chr2:79412357-80875905:+	HUH28_BILIARY_TRACT	0.16	1	0.1801	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	GFPT1--NFU1	2	7	GFPT1	7689	chr2:69585461:-	NFU1	39166	chr2:69633214:-	ONLY_REF_SPLICE	YES	61	49	0.13	0.16	0.0277	0.097	YOSHIHARA_TCGA_num_samples[KIRC:1|LUSC:1],LOCAL_REARRANGEMENT:-:[8500],GFPT1->chr2:69546905-69614382:-,glutamine--fructose-6-phosphate_transaminase_1,NFU1->NFU1_iron-sulfur_cluster_scaffold,chr2:69622882-69664760:-	HUH28_BILIARY_TRACT	0.13	0.16	0.1247	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	TTC37--CTNNA2	2	6	TTC37	9324	chr5:94872521:-	CTNNA2	76220	chr2:80620336:+	ONLY_REF_SPLICE	YES	41	0	0.16	1	0.0277	0.0831	TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,CTNNA2->catenin_alpha_2,chr2:79412357-80875905:+	HUH28_BILIARY_TRACT	0.16	1	0.1108	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HUH28_BILIARY_TRACT	1	1	0.0416	TRUE	0	5	0	18	5	TRUE	ACH-000808
HUH28_BILIARY_TRACT	EPS15--NRD1	2	0	EPS15	23929	chr1:51868107:-	NRD1	45816	chr1:52299842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Thyroid=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Caudate_(basal_ganglia)=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,NRD1->chr1:52254863-52344477:-	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	1	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	GPC6--GPC5	2	0	GPC6	1775	chr13:93879869:+	GPC5	28531	chr13:93518535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	HGNC_GENEFAM,PROTCLUST,YOSHIHARA_TCGA_num_samples[HNSC:1|KIRC:1],GPC6->chr13:93879095-95059655:+,glypican_6,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	0	3	0	3	3	TRUE	ACH-000808
HUH28_BILIARY_TRACT	NAPG--VAPA	2	0	NAPG	1254	chr18:10526155:+	VAPA	28984	chr18:9950392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	NAPG->NSF_attachment_protein_gamma,chr18:10525902-10552758:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	0	1	0	3	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	RP5-864K19.4--DNAJB6	2	0	RP5-864K19.4	1240	chr1:39325911:+	DNAJB6	36180	chr7:157208710:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	RP5-864K19.4->chr1:39325672-39385068:+,DNAJB6->DnaJ_heat_shock_protein_family_(Hsp40)_member_B6,chr7:157128075-157210133:+	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	SPAG9--MBTD1	2	0	SPAG9	3704	chr17:49133773:-	MBTD1	56839	chr17:49281286:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[56560],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	TGIF1--MYL12B	2	0	TGIF1	8043	chr18:3450503:+	MYL12B	20407	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Lung=1},TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	0	2	0	6	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	UBC--BRI3BP	2	0	UBC	2915	chr12:125399133:-	BRI3BP	10203	chr12:125497080:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx&tcga_normals:2/3694=0.05%,LOCAL_INVERSION:-:+:[76332],UBC->chr12:125396150-125401914:-,ubiquitin_C,BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	FBXL5--RP11-484O2.1	1	1	FBXL5	16339	chr4:15613889:-	RP11-484O2.1	22958	chr4:15364147:-	ONLY_REF_SPLICE	YES	60	0	0.03	1	0.0139	0.0139	FBXL5->F-box_and_leucine-rich_repeat_protein_5,chr4:15606162-15683302:-,RP11-484O2.1->chr4:15359765-15421656:-	HUH28_BILIARY_TRACT	0.03	1	0.0278	TRUE	1	6	0	5	2	TRUE	ACH-000808
NCIH650_LUNG	IFNGR2--IFNAR1	535	209	IFNGR2	4594	chr21:34787327:+	IFNAR1	21417	chr21:34721397:+	ONLY_REF_SPLICE	YES	140	89	0.84	0.89	6.836	2.6705	HGNC_GENEFAM,PROTCLUST,{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[43034],IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1),IFNAR1->Oncogene{Bushman},chr21:34696734-34732168:+,interferon_alpha_and_beta_receptor_subunit_1	NCIH650_LUNG	0.84	0.89	9.5065	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PLEKHM1--HMMR	153	71	PLEKHM1	1098	chr17:43568018:-	HMMR	29194	chr5:162890862:+	ONLY_REF_SPLICE	YES	24	4	0.9	0.98	1.955	0.9072	PLEKHM1->chr17:43513266-43568115:-,pleckstrin_homology_and_RUN_domain_containing_M1,HMMR->chr5:162887209-162918947:+,hyaluronan_mediated_motility_receptor	NCIH650_LUNG	0.9	0.98	2.8622	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	SBNO1--FAM9B	73	58	SBNO1	21821	chr12:123798167:-	FAM9B	40439	chrX:9130945:-	ONLY_REF_SPLICE	YES	353	2	0.27	0.98	0.9328	0.7411	SBNO1->Oncogene{Bushman},chr12:123773656-123849390:-,strawberry_notch_homolog_1_(Drosophila),FAM9B->chrX:8992273-9132680:-,family_with_sequence_similarity_9_member_B	NCIH650_LUNG	0.27	0.98	1.6739	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PPT1--USP35	76	43	PPT1	6334	chr1:40555082:-	USP35	28764	chr11:77924692:+	ONLY_REF_SPLICE	YES	253	53	0.32	0.69	0.9711	0.5494	PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1,USP35->chr11:77899858-77925757:+,ubiquitin_specific_peptidase_35	NCIH650_LUNG	0.32	0.69	1.5205	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PTPN12--DTX2P1	54	0	PTPN12	1371	chr7:77166962:+	DTX2P1	40648	chr7:76643229:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.69	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	NCIH650_LUNG	1	1	0.69	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PTPN12--DTX2P1	37	0	PTPN12	1371	chr7:77166962:+	DTX2P1	46311	chr7:76671294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4728	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	NCIH650_LUNG	1	1	0.4728	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	NOTCH2--CPNE8	26	14	NOTCH2	1293	chr1:120611948:-	CPNE8	59113	chr12:39170103:-	ONLY_REF_SPLICE	YES	153	87	0.21	0.31	0.3322	0.1789	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,CPNE8->chr12:39040624-39301232:-,copine_8	NCIH650_LUNG	0.21	0.31	0.5111	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	TXLNA--KPNA6	18	5	TXLNA	9200	chr1:32659761:+	KPNA6	18885	chr1:32620189:+	ONLY_REF_SPLICE	YES	98	2	0.19	0.92	0.23	0.0639	LOCAL_REARRANGEMENT:+:[3118],TXLNA->chr1:32645287-32663886:+,taxilin_alpha,KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6	NCIH650_LUNG	0.19	0.92	0.2939	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	SEPT9--RP11-686D22.2	16	7	SEPT9	37702	chr17:75489158:+	RP11-686D22.2	46339	chr17:33671349:+	INCL_NON_REF_SPLICE	YES	127	0	0.15	1	0.2044	0.0894	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-686D22.2->chr17:33671250-33671583:+	NCIH650_LUNG	0.15	1	0.2938	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	CNTN1--SBNO1	16	3	CNTN1	19729	chr12:41353036:+	SBNO1	67415	chr12:123780597:-	ONLY_REF_SPLICE	YES	42	417	0.31	0.04	0.2044	0.0383	{Klijn_CCL:Lung=1},CNTN1->chr12:41086244-41466220:+,contactin_1,SBNO1->Oncogene{Bushman},chr12:123773656-123849390:-,strawberry_notch_homolog_1_(Drosophila)	NCIH650_LUNG	0.04	0.31	0.2427	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	UHRF1BP1L--DEPDC4	9	13	UHRF1BP1L	14855	chr12:100476794:-	DEPDC4	41347	chr12:100636347:-	ONLY_REF_SPLICE	YES	34	2	0.39	0.92	0.115	0.1661	LOCAL_REARRANGEMENT:-:[60821],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,DEPDC4->DEP_domain_containing_4,chr12:100597447-100660857:-	NCIH650_LUNG	0.39	0.92	0.2811	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	IFNGR2--IFNAR1	2	22	IFNGR2	1721	chr21:34775922:+	IFNAR1	21417	chr21:34721397:+	ONLY_REF_SPLICE	YES	50	89	0.32	0.21	0.0256	0.2811	HGNC_GENEFAM,PROTCLUST,{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[43034],IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1),IFNAR1->Oncogene{Bushman},chr21:34696734-34732168:+,interferon_alpha_and_beta_receptor_subunit_1	NCIH650_LUNG	0.21	0.32	0.3067	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	UHRF1BP1L--DEPDC4	6	6	UHRF1BP1L	14855	chr12:100476794:-	DEPDC4	43274	chr12:100631895:-	ONLY_REF_SPLICE	YES	34	1	0.26	0.92	0.0767	0.0767	LOCAL_REARRANGEMENT:-:[60821],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,DEPDC4->DEP_domain_containing_4,chr12:100597447-100660857:-	NCIH650_LUNG	0.26	0.92	0.1534	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	TOP1--RP11-354I10.1	5	6	TOP1	2735	chr20:39690130:+	RP11-354I10.1	26999	chr6:9141373:-	ONLY_REF_SPLICE	YES	293	0	0.04	1	0.0639	0.0767	TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I,RP11-354I10.1->chr6:9124454-9162010:-	NCIH650_LUNG	0.04	1	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PTPN12--DTX2P1	4	0	PTPN12	1371	chr7:77166962:+	DTX2P1	47398	chr7:76672912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0511	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	NCIH650_LUNG	1	1	0.0511	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PTPN12--DTX2P1	4	0	PTPN12	1371	chr7:77166962:+	DTX2P1	41735	chr7:76644989:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0511	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	NCIH650_LUNG	1	1	0.0511	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	TMEM38B--FKTN	3	2	TMEM38B	8365	chr9:108510471:+	FKTN	28578	chr9:108382215:+	ONLY_REF_SPLICE	YES	94	20	0.05	0.2	0.0383	0.0256	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[53426],TMEM38B->chr9:108456825-108538893:+,transmembrane_protein_38B,FKTN->chr9:108320411-108403399:+,fukutin	NCIH650_LUNG	0.05	0.2	0.0639	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	TMEM38B--FKTN	1	9	TMEM38B	8365	chr9:108510471:+	FKTN	26314	chr9:108377559:+	ONLY_REF_SPLICE	YES	94	20	0.1	0.33	0.0128	0.115	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[53426],TMEM38B->chr9:108456825-108538893:+,transmembrane_protein_38B,FKTN->chr9:108320411-108403399:+,fukutin	NCIH650_LUNG	0.1	0.33	0.1278	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	WDR7--CTD-2008L17.1	3	1	WDR7	18978	chr18:54426184:+	CTD-2008L17.1	45827	chr18:53684959:+	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0383	0.0128	WDR7->WD_repeat_domain_7,chr18:54318574-54698828:+,CTD-2008L17.1->chr18:53560269-53690753:+	NCIH650_LUNG	0.36	1	0.0511	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	SETD8--CDK2AP1	3	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0383	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	NCIH650_LUNG	1	1	0.0383	TRUE	0	0	0	18	0	TRUE	ACH-000945
NCIH650_LUNG	UHRF1BP1L--DEPDC4	2	3	UHRF1BP1L	13736	chr12:100478254:-	DEPDC4	43274	chr12:100631895:-	ONLY_REF_SPLICE	YES	54	1	0.08	0.83	0.0256	0.0383	LOCAL_REARRANGEMENT:-:[60821],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,DEPDC4->DEP_domain_containing_4,chr12:100597447-100660857:-	NCIH650_LUNG	0.08	0.83	0.0639	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	KPNB1--UBB	2	0	KPNB1	23674	chr17:45758035:+	UBB	31881	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1,UBB->chr17:16284112-16286059:+,ubiquitin_B	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	MRPL48--AP1S1	2	0	MRPL48	1677	chr11:73499037:+	AP1S1	21643	chr7:100799875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,AP1S1->adaptor_related_protein_complex_1_sigma_1_subunit,chr7:100797678-100804877:+	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	NFKB2--SLC6A16	2	0	NFKB2	3380	chr10:104156246:+	SLC6A16	18506	chr19:49797810:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	NFKB2->Oncogene{Bushman},chr10:104153867-104162281:+,nuclear_factor_kappa_B_subunit_2,SLC6A16->chr19:49792895-49828482:-,solute_carrier_family_6_member_16	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PTPN11--MAPKAPK5	2	0	PTPN11	1775	chr12:112856929:+	MAPKAPK5	36211	chr12:112321385:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	PTPN11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:112856155-112947717:+,protein_tyrosine_phosphatase,_non-receptor_type_11,MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PTPN12--DTX2P1	2	0	PTPN12	2571	chr7:77168162:+	DTX2P1	40648	chr7:76643229:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PTPN23--PICALM	2	0	PTPN23	1170	chr3:47422670:+	PICALM	17342	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	TYMP--CTD-2020K17.1	2	0	TYMP	3469	chr22:50966017:-	CTD-2020K17.1	10074	chr17:43297821:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	TYMP->Oncogene{Bushman},chr22:50964181-50968485:-,thymidine_phosphorylase,CTD-2020K17.1->chr17:43268298-43299589:-	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	ZEB1--SMAD2	2	0	ZEB1	1798	chr10:31608221:+	SMAD2	34144	chr18:45423180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	DCDC1--RP11-1L12.3	1	2	DCDC1	8746	chr11:31287054:-	RP11-1L12.3	69846	chr11:27068859:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0128	0.0256	DCDC1->chr11:30851916-31391357:-,doublecortin_domain_containing_1,RP11-1L12.3->chr11:27068733-27241660:-	NCIH650_LUNG	0.75	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000945
SNU1272_KIDNEY	PLCB4--RP11-340E6.1	54	37	PLCB4	2500	chr20:9076989:+	RP11-340E6.1	53814	chr3:141432134:+	ONLY_REF_SPLICE	YES	180	0	0.34	1	0.4733	0.3243	PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,RP11-340E6.1->chr3:141382041-141439915:+	SNU1272_KIDNEY	0.34	1	0.7976	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	PLCB4--RP11-340E6.1	56	27	PLCB4	1444	chr20:9049853:+	RP11-340E6.1	53814	chr3:141432134:+	ONLY_REF_SPLICE	YES	153	0	0.35	1	0.4908	0.2367	PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,RP11-340E6.1->chr3:141382041-141439915:+	SNU1272_KIDNEY	0.35	1	0.7275	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	PLCB4--RP11-340E6.1	12	0	PLCB4	1141	chr20:9049550:+	RP11-340E6.1	53814	chr3:141432134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1052	0	PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,RP11-340E6.1->chr3:141382041-141439915:+	SNU1272_KIDNEY	1	1	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	CTB-161M19.4--GRAMD3	9	0	CTB-161M19.4	1085	chr5:118406501:-	GRAMD3	22465	chr5:125813384:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0789	0	CTB-161M19.4->chr5:118342042-118406585:-,GRAMD3->GRAM_domain_containing_3,chr5:125695824-125832186:+	SNU1272_KIDNEY	1	1	0.0789	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	DMXL1--RP11-517I3.1	3	4	DMXL1	42449	chr5:118539131:+	RP11-517I3.1	65265	chr5:125794764:-	ONLY_REF_SPLICE	YES	23	0	0.23	1	0.0263	0.0351	DMXL1->Dmx_like_1,chr5:118373467-118584833:+,RP11-517I3.1->chr5:125769197-125826063:-	SNU1272_KIDNEY	0.23	1	0.0614	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	VIM--DPYSL3	4	0	VIM	2110	chr10:17271367:+	DPYSL3	16144	chr5:146833182:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	VIM->chr10:17270258-17279592:+,vimentin,DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3	SNU1272_KIDNEY	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	THBS1--ALDOA	3	0	THBS1	1096	chr15:39873375:+	ALDOA	31807	chr16:30080238:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	SNU1272_KIDNEY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	LEPREL1--PRRC2C	2	0	LEPREL1	1235	chr3:189839992:-	PRRC2C	34340	chr1:171492360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	LEPREL1->chr3:189674517-189840226:-,PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C	SNU1272_KIDNEY	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	ZNF250--DDB2	2	0	ZNF250	5808	chr8:146112225:-	DDB2	22825	chr11:47237887:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2	SNU1272_KIDNEY	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000513
NCIH1355_LUNG	PDE4D--RP11-506H20.1	22	10	PDE4D	30827	chr5:58476421:-	RP11-506H20.1	59607	chr5:54575361:+	ONLY_REF_SPLICE	YES	87	0	0.27	1	0.1981	0.09	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-506H20.1->chr5:54529762-54591029:+	NCIH1355_LUNG	0.27	1	0.2881	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	SLC2A13--RP11-547C5.2	17	8	SLC2A13	4206	chr12:40422103:-	RP11-547C5.2	24456	chr12:43383650:-	ONLY_REF_SPLICE	YES	7	0	0.78	1	0.1531	0.072	SLC2A13->chr12:40148823-40499891:-,solute_carrier_family_2_member_13,RP11-547C5.2->chr12:43373057-43390289:-	NCIH1355_LUNG	0.78	1	0.2251	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	YAF2--LRRK2	15	6	YAF2	10231	chr12:42604157:-	LRRK2	44295	chr12:40688647:+	ONLY_REF_SPLICE	YES	65	13	0.24	0.62	0.1351	0.054	YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	NCIH1355_LUNG	0.24	0.62	0.1891	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	C7orf50--MAD1L1	14	6	C7orf50	3078	chr7:1166893:-	MAD1L1	45926	chr7:2020176:-	ONLY_REF_SPLICE	YES	92	28	0.18	0.42	0.126	0.054	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIH1355_LUNG	0.18	0.42	0.18	TRUE	0	1	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	FBXO4--NIPBL	14	3	FBXO4	6477	chr5:41934410:+	NIPBL	60913	chr5:37063892:+	ONLY_REF_SPLICE	YES	8	54	0.68	0.24	0.126	0.027	FBXO4->F-box_protein_4,chr5:41925356-41941845:+,NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+	NCIH1355_LUNG	0.24	0.68	0.153	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	TSPAN5--DNAJB14	12	2	TSPAN5	1484	chr4:99579297:-	DNAJB14	21440	chr4:100851778:-	ONLY_REF_SPLICE	YES	18	98	0.44	0.12	0.108	0.018	TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,DNAJB14->DnaJ_heat_shock_protein_family_(Hsp40)_member_B14,chr4:100817405-100867883:-	NCIH1355_LUNG	0.12	0.44	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	CLTC--RPS6KB1	10	6	CLTC	15918	chr17:57746301:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	183	44	0.08	0.27	0.09	0.054	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	NCIH1355_LUNG	0.08	0.27	0.144	TRUE	0	1	0	2	0	TRUE	ACH-000666
NCIH1355_LUNG	PDE4D--RP11-506H20.1	8	6	PDE4D	30827	chr5:58476421:-	RP11-506H20.1	60724	chr5:54578856:+	ONLY_REF_SPLICE	YES	87	6	0.14	0.7	0.072	0.054	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-506H20.1->chr5:54529762-54591029:+	NCIH1355_LUNG	0.14	0.7	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	YAF2--LRRK2	8	6	YAF2	3318	chr12:42629416:-	LRRK2	44295	chr12:40688647:+	ONLY_REF_SPLICE	YES	68	13	0.17	0.52	0.072	0.054	YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	NCIH1355_LUNG	0.17	0.52	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	CCSER1--MMRN1	9	1	CCSER1	1297	chr4:91048982:+	MMRN1	52159	chr4:90872756:+	ONLY_REF_SPLICE	YES	9	1	0.53	0.91	0.081	0.009	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	NCIH1355_LUNG	0.53	0.91	0.09	TRUE	0	1	0	1	1	TRUE	ACH-000666
NCIH1355_LUNG	YAF2--LRRK2	8	5	YAF2	1751	chr12:42631401:-	LRRK2	44295	chr12:40688647:+	ONLY_REF_SPLICE	YES	72	13	0.15	0.5	0.072	0.045	YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	NCIH1355_LUNG	0.15	0.5	0.117	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	RCC1--GNAS	8	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.072	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1355_LUNG	1	1	0.072	TRUE	0	3	0	13	2	TRUE	ACH-000666
NCIH1355_LUNG	SLC2A13--RP11-547C5.2	7	4	SLC2A13	4206	chr12:40422103:-	RP11-547C5.2	25557	chr12:43373203:-	ONLY_REF_SPLICE	YES	7	2	0.61	0.85	0.063	0.036	SLC2A13->chr12:40148823-40499891:-,solute_carrier_family_2_member_13,RP11-547C5.2->chr12:43373057-43390289:-	NCIH1355_LUNG	0.61	0.85	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	GRB14--COBLL1	7	3	GRB14	3001	chr2:165476197:-	COBLL1	29056	chr2:165600385:-	ONLY_REF_SPLICE	YES	10	4	0.5	0.71	0.063	0.027	LOCAL_REARRANGEMENT:-:[31776],GRB14->chr2:165349322-165478358:-,growth_factor_receptor_bound_protein_14,COBLL1->chr2:165510134-165700189:-,cordon-bleu_WH2_repeat_protein_like_1	NCIH1355_LUNG	0.5	0.71	0.09	TRUE	0	1	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	YAF2--LRRK2	3	6	YAF2	12641	chr12:42592938:-	LRRK2	44295	chr12:40688647:+	ONLY_REF_SPLICE	YES	65	13	0.12	0.41	0.027	0.054	YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	NCIH1355_LUNG	0.12	0.41	0.081	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	PTP4A1--KRT18	4	0	PTP4A1	3910	chr6:64282494:+	KRT18	15883	chr12:53342902:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1,KRT18->chr12:53342655-53346685:+,keratin_18	NCIH1355_LUNG	1	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	PDE4D--RP11-506H20.1	3	1	PDE4D	26151	chr5:58571164:-	RP11-506H20.1	59607	chr5:54575361:+	ONLY_REF_SPLICE	YES	98	0	0.04	1	0.027	0.009	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-506H20.1->chr5:54529762-54591029:+	NCIH1355_LUNG	0.04	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	ARMC4P1--RP11-748L13.2	3	0	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	NCIH1355_LUNG	1	1	0.027	TRUE	1	34	11	8	34	TRUE	ACH-000666
NCIH1355_LUNG	TSPAN5--DNAJB14	2	2	TSPAN5	3554	chr4:99495608:-	DNAJB14	21440	chr4:100851778:-	ONLY_REF_SPLICE	NO	23	98	0.15	0.04	0.018	0.018	TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,DNAJB14->DnaJ_heat_shock_protein_family_(Hsp40)_member_B14,chr4:100817405-100867883:-	NCIH1355_LUNG	0.04	0.15	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	40918	chr11:35006117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	NCIH1355_LUNG	1	1	0.018	TRUE	0	2	0	7	0	TRUE	ACH-000666
NCIH1355_LUNG	RNASEH2B--FAM124A	2	0	RNASEH2B	1463	chr13:51484276:+	FAM124A	26560	chr13:51854586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	RNASEH2B->chr13:51483814-51544592:+,ribonuclease_H2_subunit_B,FAM124A->chr13:51796503-51858377:+,family_with_sequence_similarity_124_member_A	NCIH1355_LUNG	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	SLK--MTMR2	2	0	SLK	1695	chr10:105727653:+	MTMR2	28131	chr11:95647476:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	SLK->STE20_like_kinase,chr10:105726959-105788991:+,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	NCIH1355_LUNG	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	TMBIM4--SLC4A7	2	0	TMBIM4	1218	chr12:66563635:-	SLC4A7	27815	chr3:27465643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4,SLC4A7->chr3:27414214-27525911:-,solute_carrier_family_4_member_7	NCIH1355_LUNG	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	TSPAN5--DNAJB14	2	0	TSPAN5	1484	chr4:99579297:-	DNAJB14	31569	chr4:100830053:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,DNAJB14->DnaJ_heat_shock_protein_family_(Hsp40)_member_B14,chr4:100817405-100867883:-	NCIH1355_LUNG	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000666
KNS62_LUNG	CTD-2547E10.2--GNPTG	84	62	CTD-2547E10.2	1617	chr16:21531149:-	GNPTG	37322	chr16:1411744:+	ONLY_REF_SPLICE	YES	15	46	0.91	0.76	1.2863	0.9494	CTD-2547E10.2->chr16:21458004-21531765:-,GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+	KNS62_LUNG	0.76	0.91	2.2357	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	CTD-2547E10.2--GNPTG	4	67	CTD-2547E10.2	1617	chr16:21531149:-	GNPTG	34484	chr16:1407701:+	ONLY_REF_SPLICE	YES	15	45	0.83	0.61	0.0613	1.026	CTD-2547E10.2->chr16:21458004-21531765:-,GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+	KNS62_LUNG	0.61	0.83	1.0873	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	HSD17B4--TNFAIP8	10	19	HSD17B4	26739	chr5:118867099:+	TNFAIP8	44947	chr5:118728511:+	ONLY_REF_SPLICE	YES	116	28	0.2	0.51	0.1531	0.291	LOCAL_REARRANGEMENT:+:[52755],HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	KNS62_LUNG	0.2	0.51	0.4441	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	HSD17B4--TNFAIP8	10	16	HSD17B4	25480	chr5:118865675:+	TNFAIP8	44947	chr5:118728511:+	ONLY_REF_SPLICE	YES	135	28	0.16	0.48	0.1531	0.245	LOCAL_REARRANGEMENT:+:[52755],HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	KNS62_LUNG	0.16	0.48	0.3981	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	CTD-2547E10.2--GNPTG	2	38	CTD-2547E10.2	1617	chr16:21531149:-	GNPTG	37451	chr16:1411873:+	ONLY_REF_SPLICE	YES	15	62	0.73	0.39	0.0306	0.5819	CTD-2547E10.2->chr16:21458004-21531765:-,GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+	KNS62_LUNG	0.39	0.73	0.6125	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	LPP--RP11-430L16.1	4	7	LPP	5388	chr3:187943315:+	RP11-430L16.1	55201	chr3:187864354:+	ONLY_REF_SPLICE	YES	5	0	0.69	1	0.0613	0.1072	LOCAL_REARRANGEMENT:+:[6264],LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,RP11-430L16.1->chr3:187824884-187864808:+	KNS62_LUNG	0.69	1	0.1685	TRUE	0	6	0	1	6	TRUE	ACH-000858
KNS62_LUNG	LPP--RP11-430L16.1	3	1	LPP	2859	chr3:187926106:+	RP11-430L16.1	55201	chr3:187864354:+	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0459	0.0153	LOCAL_REARRANGEMENT:+:[6264],LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,RP11-430L16.1->chr3:187824884-187864808:+	KNS62_LUNG	0.4	1	0.0612	TRUE	0	2	0	1	2	TRUE	ACH-000858
KNS62_LUNG	GNPTG--MKL2	2	3	GNPTG	1384	chr16:1402307:+	MKL2	11404	chr16:14173147:+	ONLY_REF_SPLICE	YES	45	0	0.1	1	0.0306	0.0459	GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+,MKL2->MKL1/myocardin_like_2,chr16:14165178-14360630:+	KNS62_LUNG	0.1	1	0.0765	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	SQLE--ZNF572	2	0	SQLE	5009	chr8:126017947:+	ZNF572	17961	chr8:125987848:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	LOCAL_REARRANGEMENT:+:[19108],SQLE->chr8:126010739-126034525:+,squalene_epoxidase,ZNF572->chr8:125985540-125991631:+,zinc_finger_protein_572	KNS62_LUNG	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	XRCC4--PPP2R2A	2	0	XRCC4	3492	chr5:82407022:+	PPP2R2A	23382	chr8:26211984:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	XRCC4->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_4,chr5:82373317-82649606:+,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	KNS62_LUNG	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	FAT2--SPARC	1	1	FAT2	12371	chr5:150928856:-	SPARC	47072	chr5:151051255:-	ONLY_REF_SPLICE	NO	15	3	0.12	0.4	0.0153	0.0153	LOCAL_REARRANGEMENT:-:[92152],FAT2->FAT_atypical_cadherin_2,Oncogene{Bushman},chr5:150883654-150948505:-,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	KNS62_LUNG	0.12	0.4	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000858
SNU1077_ENDOMETRIUM	PRKRIP1--GRB2	120	24	PRKRIP1	4162	chr7:102016769:+	GRB2	20763	chr17:73328878:-	ONLY_REF_SPLICE	YES	90	161	0.62	0.47	1.0183	0.2037	PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,GRB2->Oncogene{Bushman},chr17:73314157-73401790:-,growth_factor_receptor_bound_protein_2	SNU1077_ENDOMETRIUM	0.47	0.62	1.222	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	SPTAN1--DNM1	43	37	SPTAN1	8210	chr9:131340524:+	DNM1	49607	chr9:130980510:+	ONLY_REF_SPLICE	YES	111	11	0.42	0.88	0.3649	0.314	SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,DNM1->chr9:130965658-131017527:+,dynamin_1	SNU1077_ENDOMETRIUM	0.42	0.88	0.6789	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	WDR45B--AMZ1	35	15	WDR45B	12803	chr17:80574400:-	AMZ1	20011	chr7:2739868:+	ONLY_REF_SPLICE	YES	298	0	0.14	1	0.297	0.1273	WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-,AMZ1->archaelysin_family_metallopeptidase_1,chr7:2719156-2815134:+	SNU1077_ENDOMETRIUM	0.14	1	0.4243	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	COL1A1--COL12A1	35	0	COL1A1	12975	chr17:48266800:-	COL12A1	80399	chr6:75797412:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.297	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	SNU1077_ENDOMETRIUM	1	1	0.297	TRUE	0	5	0	2	5	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	KDSR--SERPINB2	14	0	KDSR	7459	chr18:61018121:-	SERPINB2	28961	chr18:61564325:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1188	0	KDSR->3-ketodihydrosphingosine_reductase,Oncogene{Bushman},chr18:60994959-61034743:-,SERPINB2->chr18:61538926-61571124:+,serpin_family_B_member_2	SNU1077_ENDOMETRIUM	1	1	0.1188	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	FUBP1--USP33	12	4	FUBP1	10611	chr1:78425869:-	USP33	25596	chr1:78207433:-	ONLY_REF_SPLICE	YES	284	76	0.05	0.17	0.1018	0.0339	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	SNU1077_ENDOMETRIUM	0.05	0.17	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	LINC00511--SLC39A11	11	4	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	30	38	0.33	0.28	0.0933	0.0339	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	SNU1077_ENDOMETRIUM	0.28	0.33	0.1272	TRUE	0	5	0	7	4	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	OSBPL10--BSN	10	5	OSBPL10	12012	chr3:31871532:-	BSN	39760	chr3:49662408:+	ONLY_REF_SPLICE	YES	83	0	0.15	1	0.0849	0.0424	OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10,BSN->bassoon_presynaptic_cytomatrix_protein,chr3:49591922-49708978:+	SNU1077_ENDOMETRIUM	0.15	1	0.1273	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	FAM78A--SMYD5	11	0	FAM78A	5177	chr9:134138865:-	SMYD5	15958	chr2:73447179:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0933	0	FAM78A->chr9:134133463-134151934:-,family_with_sequence_similarity_78_member_A,SMYD5->SMYD_family_member_5,chr2:73441350-73454365:+	SNU1077_ENDOMETRIUM	1	1	0.0933	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	SHROOM3--FAM47E	9	5	SHROOM3	23016	chr4:77680848:+	FAM47E	52402	chr4:77230297:+	ONLY_REF_SPLICE	YES	75	0	0.16	1	0.0764	0.0424	SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,FAM47E->chr4:77135193-77204933:+,chr4:77172874-77232282:+,family_with_sequence_similarity_47_member_E	SNU1077_ENDOMETRIUM	0.16	1	0.1188	TRUE	0	1	0	1	1	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	BEND7--FRMD4A	8	3	BEND7	2586	chr10:13568138:-	FRMD4A	36363	chr10:13900912:-	ONLY_REF_SPLICE	YES	5	2	0.69	0.85	0.0679	0.0255	BEND7->BEN_domain_containing_7,chr10:13480484-13570974:-,FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-	SNU1077_ENDOMETRIUM	0.69	0.85	0.0934	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	SFI1--RNF185	8	3	SFI1	11947	chr22:31953045:+	RNF185	43778	chr22:31583033:+	ONLY_REF_SPLICE	YES	28	22	0.28	0.33	0.0679	0.0255	SFI1->SFI1_centrin_binding_protein,chr22:31884674-32014572:+,RNF185->chr22:31556168-31603005:+,ring_finger_protein_185	SNU1077_ENDOMETRIUM	0.28	0.33	0.0934	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	LRRC40--PALMD	7	6	LRRC40	1231	chr1:70671073:-	PALMD	29151	chr1:100152232:+	ONLY_REF_SPLICE	YES	62	0	0.17	1	0.0594	0.0509	LRRC40->chr1:70610488-70671303:-,leucine_rich_repeat_containing_40,PALMD->chr1:100111499-100160097:+,palmdelphin	SNU1077_ENDOMETRIUM	0.17	1	0.1103	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	COL1A1--COL12A1	4	0	COL1A1	14895	chr17:48264880:-	COL12A1	80399	chr6:75797412:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	SNU1077_ENDOMETRIUM	1	1	0.0339	TRUE	0	2	0	1	1	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	TSG101--SPTY2D1-AS1	4	0	TSG101	6948	chr11:18531089:-	SPTY2D1-AS1	24014	chr11:18624705:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_INVERSION:-:+:[72555],TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101,SPTY2D1-AS1->SPTY2D1_antisense_RNA_1,chr11:18621334-18631802:+	SNU1077_ENDOMETRIUM	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	MTSS1--NSMCE2	3	3	MTSS1	1606	chr8:125740125:-	NSMCE2	32160	chr8:126114293:+	ONLY_REF_SPLICE	YES	30	12	0.17	0.33	0.0255	0.0255	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+	SNU1077_ENDOMETRIUM	0.17	0.33	0.051	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	ACACA--PADI2	3	1	ACACA	31464	chr17:35608931:-	PADI2	80875	chr1:17431556:-	ONLY_REF_SPLICE	YES	61	5	0.06	0.44	0.0255	0.0085	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,PADI2->Oncogene{Bushman},chr1:17393256-17445948:-,peptidyl_arginine_deiminase_2	SNU1077_ENDOMETRIUM	0.06	0.44	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	COL1A1--COL12A1	3	0	COL1A1	13148	chr17:48266627:-	COL12A1	80390	chr6:75797421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	SNU1077_ENDOMETRIUM	1	1	0.0255	TRUE	0	5	0	2	5	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	NOX4--RAB38	3	0	NOX4	18108	chr11:89106600:-	RAB38	31534	chr11:87883123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	NOX4->NADPH_oxidase_4,chr11:89057524-89322779:-,RAB38->RAB38,_member_RAS_oncogene_family,chr11:87846410-87908635:-	SNU1077_ENDOMETRIUM	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	CPSF6--REV1	2	0	CPSF6	11046	chr12:69656342:+	REV1	21113	chr2:100081447:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	LINC00511--SLC39A11	2	0	LINC00511	3455	chr17:70614455:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	NAT10--RP11-18I14.10	2	0	NAT10	11141	chr11:34145402:+	RP11-18I14.10	31030	chr10:104209944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	NAT10->N-acetyltransferase_10,chr11:34127149-34169217:+,RP11-18I14.10->chr10:104209574-104220863:+	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-286N22.8--DYNLT1	2	0	RP11-286N22.8	1963	chr11:61197654:+	DYNLT1	16494	chr6:159058926:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	RP11-286N22.8->chr11:61196692-61253294:+,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	RPL32P3--IFT122	2	0	RPL32P3	4754	chr3:129112478:-	IFT122	38380	chr3:129221554:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx_FI:{Brain=[count:2=pct:0.3],Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},LOCAL_INVERSION:-:+:[40470],RPL32P3->chr3:129101765-129118498:-,ribosomal_protein_L32_pseudogene_3,IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	4	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	UTRN--ARFGAP1	2	0	UTRN	2292	chr6:144613043:+	ARFGAP1	101412	chr20:61916218:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	UTRN->chr6:144606837-145174170:+,utrophin,ARFGAP1->ADP_ribosylation_factor_GTPase_activating_protein_1,chr20:61904137-61921142:+	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	SORBS1--KCNK9	1	1	SORBS1	3202	chr10:97250792:-	KCNK9	49685	chr8:140631342:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0085	0.0085	SORBS1->chr10:97071528-97321171:-,sorbin_and_SH3_domain_containing_1,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	SNU1077_ENDOMETRIUM	0.67	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000302
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	797	348	NPM1	4640	chr5:170818803:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	1629	0	0.41	1	8.3384	3.6408	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	11.9792	TRUE	0	0	0	6	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEGF8--CNFN	131	54	MEGF8	27471	chr19:42874983:+	CNFN	37748	chr19:42891628:-	ONLY_REF_SPLICE	YES	39	0	0.83	1	1.3705	0.565	LOCAL_INVERSION:+:-:[8250],MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,CNFN->chr19:42891171-42894439:-,cornifelin	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	1.9355	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	1	167	NPM1	4265	chr5:170818428:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	1841	0	0.08	1	0.0105	1.7472	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	1.7577	TRUE	0	0	0	6	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRSX--TCEANC	31	10	DHRSX	4890	chrX:2326786:-	TCEANC	20079	chrX:13677771:+	ONLY_REF_SPLICE	YES	12	5	0.77	0.89	0.3243	0.1046	DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked,TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.89	0.4289	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZC3H15--FAM171B	27	12	ZC3H15	6140	chr2:187366152:+	FAM171B	17938	chr2:187604955:+	ONLY_REF_SPLICE	YES	137	6	0.22	0.87	0.2825	0.1255	GTEx&tcga_normals:1/3694=0.03%,ZC3H15->chr2:187350883-187374090:+,zinc_finger_CCCH-type_containing_15,FAM171B->chr2:187558698-187630685:+,family_with_sequence_similarity_171_member_B	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.87	0.408	TRUE	0	1	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--CTD-2575K13.6	26	2	GLTSCR1	1973	chr19:48112425:+	CTD-2575K13.6	21208	chr19:42414249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.272	0.0209	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,CTD-2575K13.6->chr19:42412671-42414249:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2929	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--CTD-2575K13.6	18	23	GLTSCR1	3075	chr19:48173801:+	CTD-2575K13.6	21208	chr19:42414249:-	ONLY_REF_SPLICE	YES	7	0	0.85	1	0.1883	0.2406	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,CTD-2575K13.6->chr19:42412671-42414249:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.4289	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHX15--CCDC149	16	7	DHX15	20362	chr4:24531224:-	CCDC149	29547	chr4:24878319:-	ONLY_REF_SPLICE	YES	281	3	0.08	0.88	0.1674	0.0732	DHX15->DEAH-box_helicase_15,chr4:24519064-24586173:-,CCDC149->chr4:24807739-24981826:-,coiled-coil_domain_containing_149	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.88	0.2406	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARCH5--KIF11	11	1	MARCH5	3696	chr10:94071094:+	KIF11	15730	chr10:94366022:+	ONLY_REF_SPLICE	YES	53	16	0.18	0.43	0.1151	0.0105	MARCH5->chr10:94050920-94113721:+,membrane_associated_ring-CH-type_finger_5,KIF11->chr10:94353043-94415150:+,kinesin_family_member_11	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.43	0.1256	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--MEGF8	6	5	GLTSCR1	3075	chr19:48173801:+	MEGF8	49330	chr19:42879659:+	ONLY_REF_SPLICE	YES	7	44	0.61	0.2	0.0628	0.0523	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.61	0.1151	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRSX--TCEANC	5	5	DHRSX	4890	chrX:2326786:-	TCEANC	22288	chrX:13680620:+	ONLY_REF_SPLICE	YES	12	7	0.45	0.59	0.0523	0.0523	DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked,TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.59	0.1046	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNK9--TRAPPC9	6	1	KCNK9	1347	chr8:140714953:-	TRAPPC9	74595	chr8:140744445:-	ONLY_REF_SPLICE	YES	2	7	0.78	0.5	0.0628	0.0105	LOCAL_REARRANGEMENT:-:[27287],KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.78	0.0733	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--CTD-2575K13.6	6	0	GLTSCR1	1973	chr19:48112425:+	CTD-2575K13.6	21834	chr19:42413623:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0628	0	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,CTD-2575K13.6->chr19:42412671-42414249:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--CTD-2575K13.6	5	2	GLTSCR1	1087	chr19:48111539:+	CTD-2575K13.6	21208	chr19:42414249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0523	0.0209	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,CTD-2575K13.6->chr19:42412671-42414249:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0732	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NSD1--ZNF346	4	2	NSD1	4006	chr5:176563031:+	ZNF346	52011	chr5:176491513:+	ONLY_REF_SPLICE	YES	37	33	0.14	0.15	0.0418	0.0209	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[51836],NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.15	0.0627	TRUE	0	0	0	2	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--CTD-2575K13.6	4	1	GLTSCR1	3075	chr19:48173801:+	CTD-2575K13.6	21834	chr19:42413623:-	ONLY_REF_SPLICE	YES	7	21	0.42	0.19	0.0418	0.0105	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,CTD-2575K13.6->chr19:42412671-42414249:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.42	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS19--GZMB	4	0	RPS19	1928	chr19:42364915:+	GZMB	12124	chr14:25103366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19,GZMB->chr14:25100160-25103473:-,granzyme_B	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIP13--CEACAM8	4	0	TRIP13	14669	chr5:917266:+	CEACAM8	24343	chr19:43087489:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	TRIP13->chr5:892758-919472:+,thyroid_hormone_receptor_interactor_13,CEACAM8->carcinoembryonic_antigen_related_cell_adhesion_molecule_8,chr19:43084393-43099207:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRSX--TCEANC	2	4	DHRSX	3821	chrX:2343238:-	TCEANC	20079	chrX:13677771:+	ONLY_REF_SPLICE	YES	9	5	0.4	0.55	0.0209	0.0418	DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked,TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.55	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTFR1--RP11-112J3.15	3	0	MTFR1	13810	chr8:66631730:+	RP11-112J3.15	22834	chr9:35756858:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,RP11-112J3.15->chr9:35756709-35757937:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RGP1--PDE7A	3	0	RGP1	8656	chr9:35756858:+	PDE7A	34071	chr8:66631730:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	RGP1->RGP1_homolog,_RAB6A_GEF_complex_partner_1,chr9:35749203-35758572:+,PDE7A->chr8:66629745-66754557:-,phosphodiesterase_7A	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-640M9.1--SRGAP2B	3	0	RP11-640M9.1	2197	chr1:144520774:-	SRGAP2B	24229	chr1:143915700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	RP11-640M9.1->chr1:144456138-144521970:-,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	2	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-536B24.2--HSPA5	3	0	RP4-536B24.2	1054	chr16:87870191:+	HSPA5	9510	chr9:127999232:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	RP4-536B24.2->chr16:87870138-87871269:+,HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SERPINA1--ISY1	3	0	SERPINA1	9297	chr14:94844816:-	ISY1	23503	chr3:128853022:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	SERPINA1->Oncogene{Bushman},chr14:94843084-94857030:-,serpin_family_A_member_1,ISY1->ISY1_splicing_factor_homolog,chr3:128846258-128880136:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRSX--TCEANC	2	3	DHRSX	4890	chrX:2326786:-	TCEANC	26104	chrX:13684436:+	ONLY_REF_SPLICE	YES	12	2	0.29	0.71	0.0209	0.0314	DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked,TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.71	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABCF1--GANAB	2	0	ABCF1	2232	chr6:30545232:+	GANAB	19383	chr11:62407203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ABCF1->ATP_binding_cassette_subfamily_F_member_1,chr6:30539153-30564956:+,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASPH--EFNA5	2	0	ASPH	8053	chr8:62593527:-	EFNA5	53638	chr5:106723472:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,EFNA5->chr5:106712590-107006596:-,ephrin_A5	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCNT2--SRPK1	2	0	CCNT2	6381	chr2:135700244:+	SRPK1	24491	chr6:35858790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CCNT2->chr2:135675805-135716912:+,cyclin_T2,SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT1--RTFDC1	2	0	CNOT1	17824	chr16:58594116:-	RTFDC1	56560	chr20:55049734:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,RTFDC1->chr20:55043647-55093943:+,replication_termination_factor_2_domain_containing_1	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELMO1--ANKIB1	2	0	ELMO1	7375	chr7:37382217:-	ANKIB1	45628	chr7:91924203:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1,ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNDC3B--CCDC91	2	0	FNDC3B	8204	chr3:171866360:+	CCDC91	58050	chr12:28410135:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS5--CCNI	2	0	GAS5	4654	chr1:173834367:-	CCNI	11200	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding),CCNI->chr4:77968311-77997158:-,cyclin_I	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NELFCD--DYNC1LI1	2	0	NELFCD	1162	chr20:57556424:+	DYNC1LI1	22719	chr3:32574589:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	NELFCD->chr20:57556263-57570188:+,negative_elongation_factor_complex_member_C/D,DYNC1LI1->chr3:32567463-32612366:-,dynein_cytoplasmic_1_light_intermediate_chain_1	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP210--THUMPD3	2	0	NUP210	11745	chr3:13417004:-	THUMPD3	48578	chr3:9408592:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa,THUMPD3->THUMP_domain_containing_3,chr3:9404526-9428475:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OGFR--CIRH1A	2	0	OGFR	4491	chr20:61439677:+	CIRH1A	25882	chr16:69189774:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	OGFR->chr20:61436187-61445352:+,opioid_growth_factor_receptor,CIRH1A->chr16:69165194-69265033:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PACS1--ATP5J	2	0	PACS1	1480	chr11:65838313:+	ATP5J	33638	chr21:27102112:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,ATP5J->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F6,chr21:27088815-27107984:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PGM2--EZH2	2	0	PGM2	6284	chr4:37841881:+	EZH2	29182	chr7:148516779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	PGM2->chr4:37828255-37864558:+,phosphoglucomutase_2,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2A--CC2D1A	2	0	PRRC2A	3972	chr6:31592299:+	CC2D1A	31688	chr19:14038706:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A,CC2D1A->chr19:14017014-14041692:+,coiled-coil_and_C2_domain_containing_1A	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABAC1--LIPE-AS1	2	0	RABAC1	2105	chr19:42462438:-	LIPE-AS1	16291	chr19:43026144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	RABAC1->Rab_acceptor_1,chr19:42460833-42463542:-,LIPE-AS1->LIPE_antisense_RNA_1,chr19:42901280-43156507:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--NT5M	2	0	SF1	3289	chr11:64543970:-	NT5M	18374	chr17:17209857:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,NT5M->5',3'-nucleotidase,_mitochondrial,chr17:17206649-17250977:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A9--PHF14	2	0	SLC38A9	7186	chr5:54993674:-	PHF14	58284	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},SLC38A9->chr5:54921673-55069022:-,solute_carrier_family_38_member_9,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX4--SRP9	2	0	SNX4	2288	chr3:125223467:-	SRP9	19329	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	SNX4->chr3:125165495-125239041:-,sorting_nexin_4,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRSX--TCEANC	1	1	DHRSX	2207	chrX:2418858:-	TCEANC	26104	chrX:13684436:+	ONLY_REF_SPLICE	YES	33	2	0.06	0.5	0.0105	0.0105	DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked,TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.5	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VCAN--XRCC4	1	1	VCAN	5412	chr5:82789750:+	XRCC4	41394	chr5:82648944:+	ONLY_REF_SPLICE	YES	31	12	0.06	0.14	0.0105	0.0105	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Artery_-_Coronary=1},VCAN->Oncogene{Bushman},chr5:82767284-82878122:+,versican,XRCC4->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_4,chr5:82373317-82649606:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.14	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	602	503	NPM1	4640	chr5:170818803:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	6283	0	0.15	1	7.2844	6.0865	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	13.3709	TRUE	0	0	0	6	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV14DV4--TRAJ39	34	5	TRAV14DV4	1589	chr14:22392827:+	TRAJ39	4596	chr14:22970591:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4114	0.0605	HGNC_GENEFAM,TRAV14DV4->T_cell_receptor_alpha_variable_14/delta_variable_4,chr14:22392239-22392827:+,TRAJ39->T_cell_receptor_alpha_joining_39,chr14:22970585-22970647:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4719	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRCC6--WDR45B	3	0	XRCC6	1968	chr22:42018090:+	WDR45B	20813	chr17:80588898:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC093627.9--TBC1D5	2	0	AC093627.9	1935	chr7:148532:-	TBC1D5	43975	chr3:17349626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	AC093627.9->chr7:135853-149466:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPS2--TMBIM4	2	0	CAPS2	25622	chr12:75676031:-	TMBIM4	37045	chr12:66547228:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},CAPS2->calcyphosine_2,chr12:75669759-75784708:-,TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD53--RAP1A	2	0	CD53	1096	chr1:111415870:+	RAP1A	17407	chr1:112233956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CD53->CD53_molecule,Oncogene{Bushman},chr1:111415775-111442550:+,RAP1A->Oncogene{Bushman},RAP1A,_member_of_RAS_oncogene_family,chr1:112084840-112259313:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HINFP--VPS52	2	0	HINFP	10513	chr11:119003929:+	VPS52	26229	chr6:33218764:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	HINFP->chr11:118992297-119006752:+,histone_H4_transcription_factor,VPS52->VPS52,_GARP_complex_subunit,chr6:33218049-33239824:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--ACOT7	2	0	KCNAB2	2323	chr1:6052848:+	ACOT7	45183	chr1:6393628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LY96--RP1-16A9.1	1	4	LY96	4475	chr8:74939076:+	RP1-16A9.1	10107	chr8:75119956:+	ONLY_REF_SPLICE	YES	86	0	0.05	1	0.0121	0.0484	LY96->chr8:74903587-74941322:+,lymphocyte_antigen_96,RP1-16A9.1->chr8:75111631-75120676:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFKFB3--RBM17	2	0	PFKFB3	1096	chr10:6186976:+	RBM17	27573	chr10:6139011:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[27461],PFKFB3->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_3,chr10:6186881-6277495:+,RBM17->RNA_binding_motif_protein_17,chr10:6130950-6159420:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	2	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SHKBP1--PLEKHG2	2	0	SHKBP1	1780	chr19:41083536:+	PLEKHG2	20918	chr19:39908195:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SHKBP1->SH3KBP1_binding_protein_1,chr19:41082757-41097305:+,PLEKHG2->Oncogene{Bushman},chr19:39903225-39919054:+,pleckstrin_homology_and_RhoGEF_domain_containing_G2	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A12--DDX1	2	0	SLC25A12	6620	chr2:172725191:-	DDX1	41462	chr2:15753348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},SLC25A12->chr2:172640880-172864766:-,solute_carrier_family_25_member_12,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRABD--TMEM8A	2	0	TRABD	1062	chr22:50624405:+	TMEM8A	15512	chr16:427848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	TRABD->TraB_domain_containing,chr22:50624344-50638027:+,TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDGFRA--DCUN1D4	1	1	PDGFRA	1319	chr4:55095582:+	DCUN1D4	39543	chr4:52729603:+	ONLY_REF_SPLICE	YES	3	34	0.4	0.06	0.0121	0.0121	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},PDGFRA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr4:55095264-55164414:+,platelet_derived_growth_factor_receptor_alpha,DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.4	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
U251MG_CENTRAL_NERVOUS_SYSTEM	DHX38--AMPD1	74	79	DHX38	3764	chr16:72130908:+	AMPD1	23632	chr1:115231362:-	ONLY_REF_SPLICE	YES	99	0	0.61	1	0.9535	1.018	DHX38->DEAH-box_helicase_38,chr16:72127461-72146811:+,AMPD1->adenosine_monophosphate_deaminase_1,chr1:115215719-115238239:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0.61	1	1.9715	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	DHX38--AMPD1	19	85	DHX38	4536	chr16:72131680:+	AMPD1	23632	chr1:115231362:-	ONLY_REF_SPLICE	YES	85	0	0.55	1	0.2448	1.0953	DHX38->DEAH-box_helicase_38,chr16:72127461-72146811:+,AMPD1->adenosine_monophosphate_deaminase_1,chr1:115215719-115238239:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0.55	1	1.3401	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MLF1IP--ENPP6	18	16	MLF1IP	8907	chr4:185634098:-	ENPP6	24827	chr4:185074886:-	ONLY_REF_SPLICE	YES	89	0	0.28	1	0.2319	0.2062	MLF1IP->chr4:185615772-185655287:-,ENPP6->chr4:185009859-185142383:-,ectonucleotide_pyrophosphatase/phosphodiesterase_6	U251MG_CENTRAL_NERVOUS_SYSTEM	0.28	1	0.4381	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	PSD3--RBPMS	17	12	PSD3	20075	chr8:18656805:-	RBPMS	54699	chr8:30332295:+	ONLY_REF_SPLICE	YES	71	10	0.29	0.74	0.2191	0.1546	PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,RBPMS->RNA_binding_protein_with_multiple_splicing,chr8:30241944-30429778:+	U251MG_CENTRAL_NERVOUS_SYSTEM	0.29	0.74	0.3737	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MICALL2--MAD1L1	12	4	MICALL2	1319	chr7:1498820:-	MAD1L1	59103	chr7:1855864:-	ONLY_REF_SPLICE	YES	24	38	0.4	0.3	0.1546	0.0515	MICALL2->MICAL_like_2,chr7:1468101-1499138:-,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0.3	0.4	0.2061	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	VIM--IGFBP7	6	0	VIM	2695	chr10:17271952:+	IGFBP7	16001	chr4:57899417:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,VIM->chr10:17270258-17279592:+,vimentin,IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0773	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	6	0	VIM	2124	chr10:17271381:+	TMSB4X	12219	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0773	TRUE	0	0	0	3	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	VIM--IGFBP7	5	0	VIM	2120	chr10:17271377:+	IGFBP7	12218	chr4:57976538:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0644	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,VIM->chr10:17270258-17279592:+,vimentin,IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0644	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	CNPY3--SPACA1	4	0	CNPY3	1522	chr6:42897459:+	SPACA1	10615	chr6:88763664:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0515	0	CNPY3->canopy_FGF_signaling_regulator_3,chr6:42896938-42907025:+,SPACA1->chr6:88757507-88776550:+,sperm_acrosome_associated_1	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0515	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	ZKSCAN7--KIF15	1	5	ZKSCAN7	7346	chr3:44612157:+	KIF15	33590	chr3:44856403:+	ONLY_REF_SPLICE	YES	4	28	0.6	0.18	0.0129	0.0644	ZKSCAN7->chr3:44596685-44624975:+,zinc_finger_with_KRAB_and_SCAN_domains_7,KIF15->chr3:44803209-44914868:+,kinesin_family_member_15	U251MG_CENTRAL_NERVOUS_SYSTEM	0.18	0.6	0.0773	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MLF1IP--ENPP6	1	4	MLF1IP	8907	chr4:185634098:-	ENPP6	26007	chr4:185045425:-	ONLY_REF_SPLICE	NO	89	7	0.05	0.42	0.0129	0.0515	MLF1IP->chr4:185615772-185655287:-,ENPP6->chr4:185009859-185142383:-,ectonucleotide_pyrophosphatase/phosphodiesterase_6	U251MG_CENTRAL_NERVOUS_SYSTEM	0.05	0.42	0.0644	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MRPS18B--XPO5	2	0	MRPS18B	1235	chr6:30585720:+	XPO5	35617	chr6:43494485:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MRPS18B->chr6:30585486-30594172:+,mitochondrial_ribosomal_protein_S18B,XPO5->chr6:43490072-43543812:-,exportin_5	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	PCMTD1--TCEANC	2	0	PCMTD1	7395	chr8:52758221:-	TCEANC	21515	chrX:13673408:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	RP11-274B21.1--VIM	2	0	RP11-274B21.1	3261	chr7:128214845:+	VIM	26443	chr10:17276692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	RP11-274B21.1->chr7:128171752-128269512:+,VIM->chr10:17270258-17279592:+,vimentin	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000232
FU97_STOMACH	ATP2A2--IFT81	470	398	ATP2A2	15858	chr12:110771948:+	IFT81	55642	chr12:110655849:+	ONLY_REF_SPLICE	YES	939	34	0.48	0.96	4.8902	4.141	YOSHIHARA_TCGA_num_samples[LUAD:2],{Klijn_CCL:Stomach=1,Cervix=1},LOCAL_REARRANGEMENT:+:[61959],ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,IFT81->chr12:110562140-110656602:+,intraflagellar_transport_81	FU97_STOMACH	0.48	0.96	9.0312	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	BANP--CA5A	68	1	BANP	3272	chr16:87985121:+	CA5A	39897	chr16:87936126:-	ONLY_REF_SPLICE	YES	0	20	1	0.78	0.7075	0.0104	LOCAL_INVERSION:+:-:[12715],BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-	FU97_STOMACH	0.78	1	0.7179	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	GMCL1--ANXA4	51	51	GMCL1	9891	chr2:70076874:+	ANXA4	30750	chr2:70031665:+	ONLY_REF_SPLICE	YES	123	2083	0.45	0.05	0.5306	0.5306	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[3178],GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,ANXA4->annexin_A4,chr2:69871557-70053596:+	FU97_STOMACH	0.05	0.45	1.0612	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	KRT19--SLC47A1	34	32	KRT19	1481	chr17:39684080:-	SLC47A1	11788	chr17:19445706:+	ONLY_REF_SPLICE	YES	272	12	0.2	0.85	0.3538	0.3329	{Klijn_CCL:Stomach=1},KRT19->chr17:39679869-39684560:-,keratin_19,SLC47A1->chr17:19398698-19482347:+,solute_carrier_family_47_member_1	FU97_STOMACH	0.2	0.85	0.6867	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	KIAA0368--SUSD1	30	21	KIAA0368	25389	chr9:114170851:-	SUSD1	74323	chr9:114804240:-	ONLY_REF_SPLICE	YES	162	79	0.24	0.39	0.3121	0.2185	KIAA0368->KIAA0368,chr9:114122972-114247025:-,SUSD1->chr9:114803065-114937688:-,sushi_domain_containing_1	FU97_STOMACH	0.24	0.39	0.5306	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	KIAA0195--ARMC7	13	32	KIAA0195	18849	chr17:73492552:+	ARMC7	27124	chr17:73110264:+	ONLY_REF_SPLICE	YES	79	44	0.36	0.51	0.1353	0.3329	KIAA0195->chr17:73437240-73496171:+,ARMC7->armadillo_repeat_containing_7,chr17:73106047-73126360:+	FU97_STOMACH	0.36	0.51	0.4682	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	FNDC3B--TMEM212	13	21	FNDC3B	6332	chr3:171851336:+	TMEM212	48823	chr3:171569772:+	ONLY_REF_SPLICE	YES	734	0	0.04	1	0.1353	0.2185	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,TMEM212->chr3:171561139-171656505:+,transmembrane_protein_212	FU97_STOMACH	0.04	1	0.3538	TRUE	0	1	0	1	1	TRUE	ACH-000633
FU97_STOMACH	HSPG2--WNT4	14	13	HSPG2	51307	chr1:22156486:-	WNT4	62097	chr1:22456344:-	ONLY_REF_SPLICE	YES	103	0	0.21	1	0.1457	0.1353	HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2,WNT4->Wnt_family_member_4,chr1:22443798-22470462:-	FU97_STOMACH	0.21	1	0.281	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	SMAD6--ZWILCH	12	12	SMAD6	6684	chr15:67009390:+	ZWILCH	13715	chr15:66801183:+	INCL_NON_REF_SPLICE	YES	275	17	0.08	0.59	0.1249	0.1249	SMAD6->SMAD_family_member_6,chr15:66994566-67074338:+,ZWILCH->chr15:66797297-66842115:+,zwilch_kinetochore_protein	FU97_STOMACH	0.08	0.59	0.2498	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	CA5A--BANP	6	6	CA5A	1221	chr16:87969915:-	BANP	22006	chr16:88008654:+	ONLY_REF_SPLICE	YES	39	5	0.24	0.71	0.0624	0.0624	LOCAL_INVERSION:-:+:[12715],CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-,BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+	FU97_STOMACH	0.24	0.71	0.1248	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	RP11-1319K7.1--GTF2H2B	6	3	RP11-1319K7.1	12960	chr5:69394512:-	GTF2H2B	19908	chr5:69716076:+	ONLY_REF_SPLICE	YES	24	175	0.27	0.05	0.0624	0.0312	RP11-1319K7.1->chr5:69390202-69424261:-,GTF2H2B->chr5:69711179-69743885:+,general_transcription_factor_IIH_subunit_2B_(pseudogene)	FU97_STOMACH	0.05	0.27	0.0936	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	NPHP4--MAP7D1	5	5	NPHP4	16885	chr1:5964677:-	MAP7D1	43159	chr1:36636572:+	ONLY_REF_SPLICE	YES	47	23	0.18	0.3	0.052	0.052	NPHP4->chr1:5922871-6052533:-,nephronophthisis_4,MAP7D1->MAP7_domain_containing_1,chr1:36621180-36646450:+	FU97_STOMACH	0.18	0.3	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	BANP--CA5A	3	11	BANP	4030	chr16:87985879:+	CA5A	39897	chr16:87936126:-	ONLY_REF_SPLICE	YES	5	20	0.74	0.41	0.0312	0.1145	LOCAL_INVERSION:+:-:[12715],BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-	FU97_STOMACH	0.41	0.74	0.1457	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	NXPE3--ABI3BP	5	3	NXPE3	3808	chr3:101501624:+	ABI3BP	25764	chr3:100621530:-	ONLY_REF_SPLICE	YES	57	0	0.12	1	0.052	0.0312	NXPE3->chr3:101498046-101547073:+,neurexophilin_and_PC-esterase_domain_family_member_3,ABI3BP->ABI_family_member_3_binding_protein,chr3:100468000-100712359:-	FU97_STOMACH	0.12	1	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	AL021546.6--PLA2G1B	5	2	AL021546.6	2497	chr12:120884632:+	PLA2G1B	8845	chr12:120763823:-	ONLY_REF_SPLICE	YES	102	0	0.06	1	0.052	0.0208	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},AL021546.6->chr12:120876001-120897809:+,PLA2G1B->chr12:120759914-120765592:-,phospholipase_A2_group_IB	FU97_STOMACH	0.06	1	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	BLVRA--STK17A	5	0	BLVRA	4300	chr7:43810769:+	STK17A	17592	chr7:43647855:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.052	0	BLVRA->biliverdin_reductase_A,chr7:43798279-43846939:+,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	FU97_STOMACH	1	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	KIAA0195--ARMC7	2	10	KIAA0195	18849	chr17:73492552:+	ARMC7	28786	chr17:73124772:+	ONLY_REF_SPLICE	YES	79	30	0.13	0.29	0.0208	0.104	KIAA0195->chr17:73437240-73496171:+,ARMC7->armadillo_repeat_containing_7,chr17:73106047-73126360:+	FU97_STOMACH	0.13	0.29	0.1248	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	ARHGEF10L--RP11-723G8.2	4	0	ARHGEF10L	1116	chr1:17866445:+	RP11-723G8.2	45382	chr18:69403790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	ARHGEF10L->Rho_guanine_nucleotide_exchange_factor_10_like,chr1:17866330-18024369:+,RP11-723G8.2->chr18:69399851-69455364:-	FU97_STOMACH	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	ZNF26--ARHGAP9	4	0	ZNF26	1509	chr12:133563459:+	ARHGAP9	22539	chr12:57868486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	ZNF26->chr12:133562951-133589154:+,zinc_finger_protein_26,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	FU97_STOMACH	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	UVRAG--MYLK	3	3	UVRAG	7929	chr11:75599947:+	MYLK	34627	chr3:123550517:-	ONLY_REF_SPLICE	YES	71	1	0.08	0.86	0.0312	0.0312	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,MYLK->chr3:123328896-123603178:-,myosin_light_chain_kinase	FU97_STOMACH	0.08	0.86	0.0624	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	HSPG2--WNT4	2	6	HSPG2	50318	chr1:22157475:-	WNT4	62097	chr1:22456344:-	ONLY_REF_SPLICE	YES	166	0	0.05	1	0.0208	0.0624	HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2,WNT4->Wnt_family_member_4,chr1:22443798-22470462:-	FU97_STOMACH	0.05	1	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	LYSMD4--VWA5A	3	0	LYSMD4	7899	chr15:100260989:-	VWA5A	24891	chr11:124012305:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	LYSMD4->LysM_domain_containing_4,chr15:100255902-100273766:-,VWA5A->chr11:123986069-124018428:+,von_Willebrand_factor_A_domain_containing_5A	FU97_STOMACH	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	PNISR--RP11-347C12.1	3	0	PNISR	1117	chr6:99873091:-	RP11-347C12.1	25326	chr16:30246900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,RP11-347C12.1->chr16:30234258-30265831:-	FU97_STOMACH	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	RRBP1--JAG1	3	0	RRBP1	10888	chr20:17614105:-	JAG1	30633	chr20:10644662:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	RRBP1->chr20:17594323-17662940:-,ribosome_binding_protein_1,JAG1->Oncogene{Bushman},chr20:10618332-10654694:-,chr20:10625847-10627014:-,jagged_1	FU97_STOMACH	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	TPM4--AC009227.2	3	0	TPM4	16147	chr19:16212221:+	AC009227.2	25031	chr2:155293896:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,AC009227.2->chr2:155292365-155313950:-	FU97_STOMACH	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	CHD1L--TMEM41B	2	0	CHD1L	6077	chr1:146731572:+	TMEM41B	32385	chr11:9309353:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CHD1L->chr1:146714291-146767443:+,chromodomain_helicase_DNA_binding_protein_1-like,TMEM41B->chr11:9302201-9336327:-,transmembrane_protein_41B	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	27609	chr13:114193672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	FU97_STOMACH	1	1	0.0208	TRUE	0	4	1	3	2	TRUE	ACH-000633
FU97_STOMACH	HSPG2--WNT4	2	0	HSPG2	49837	chr1:22157956:-	WNT4	62097	chr1:22456344:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2,WNT4->Wnt_family_member_4,chr1:22443798-22470462:-	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	JPX--ANKS6	2	0	JPX	4177	chrX:73214796:+	ANKS6	18066	chr9:101547158:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	JPX->JPX_transcript,_XIST_activator_(non-protein_coding),chrX:73164159-73290243:+,ANKS6->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_6,chr9:101493611-101559247:-	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	MLLT10--CWC27	2	0	MLLT10	10376	chr10:21884369:+	CWC27	55694	chr5:64313986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	NDUFS1--NBEAL1	2	0	NDUFS1	16037	chr2:206992521:-	NBEAL1	61635	chr2:204000400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	NDUFS1->NADH:ubiquinone_oxidoreductase_core_subunit_S1,chr2:206979541-207024327:-,NBEAL1->chr2:203879602-204091101:+,neurobeachin_like_1	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	PLD1--FNDC3B	2	0	PLD1	1552	chr3:171528189:-	FNDC3B	47799	chr3:171830242:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1,FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	2	0	TRUE	ACH-000633
FU97_STOMACH	PSMA1--PDE3B	2	0	PSMA1	2367	chr11:14632512:-	PDE3B	23191	chr11:14793483:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1,PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	SLC12A9--CRYZL1	2	0	SLC12A9	4264	chr7:100452376:+	CRYZL1	38225	chr21:34963517:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	SLC12A9->chr7:100424442-100464631:+,solute_carrier_family_12_member_9,CRYZL1->chr21:34961647-35016232:-,crystallin_zeta_like_1	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	UBE2B--CARS	2	0	UBE2B	2542	chr5:133710154:+	CARS	17425	chr11:3063486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B,CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	YME1L1--RAB18	2	0	YME1L1	7416	chr10:27434357:-	RAB18	33873	chr10:27815757:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	YME1L1->YME1_like_1_ATPase,chr10:27399383-27444195:-,RAB18->RAB18,_member_RAS_oncogene_family,chr10:27793197-27831143:+	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	FMNL3--FAIM2	1	3	FMNL3	2111	chr12:50100838:-	FAIM2	33945	chr12:50295108:-	ONLY_REF_SPLICE	YES	27	0	0.13	1	0.0104	0.0312	FMNL3->Oncogene{Bushman},chr12:50031724-50101948:-,formin_like_3,FAIM2->Fas_apoptotic_inhibitory_molecule_2,chr12:50260679-50298000:-	FU97_STOMACH	0.13	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	HMOX2--EFCAB5	1	1	HMOX2	2722	chr16:4526488:+	EFCAB5	19016	chr17:28269258:+	ONLY_REF_SPLICE	YES	19	0	0.1	1	0.0104	0.0104	HMOX2->chr16:4524691-4560348:+,heme_oxygenase_2,EFCAB5->EF-hand_calcium_binding_domain_5,chr17:28256218-28435470:+	FU97_STOMACH	0.1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	TAMM41--LINC00885	1	1	TAMM41	13768	chr3:11850991:-	LINC00885	22874	chr3:195886771:+	ONLY_REF_SPLICE	YES	29	0	0.06	1	0.0104	0.0104	TAMM41->TAM41_mitochondrial_translocator_assembly_and_maintenance_homolog,chr3:11831916-11888393:-,LINC00885->chr3:195869507-195887761:+,long_intergenic_non-protein_coding_RNA_885	FU97_STOMACH	0.06	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
HS688AT_FIBROBLAST	CD63--TGFBI	69	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8232	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS688AT_FIBROBLAST	1	1	0.8232	TRUE	0	0	0	14	0	TRUE	ACH-000306
HS688AT_FIBROBLAST	THBS1--VIM	7	0	THBS1	1101	chr15:39873380:+	VIM	23486	chr10:17271402:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0	GTEx&tcga_normals:2/3694=0.05%,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,VIM->chr10:17270258-17279592:+,vimentin	HS688AT_FIBROBLAST	1	1	0.0835	TRUE	0	0	0	1	0	TRUE	ACH-000306
HS688AT_FIBROBLAST	ADIRF-AS1--LGALS1	4	0	ADIRF-AS1	3806	chr10:88728263:-	LGALS1	10029	chr22:38071676:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	ADIRF-AS1->ADIRF_antisense_RNA_1,chr10:88725102-88731068:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HS688AT_FIBROBLAST	1	1	0.0477	TRUE	0	0	0	5	0	TRUE	ACH-000306
HS688AT_FIBROBLAST	ADIRF-AS1--LGALS1	3	0	ADIRF-AS1	3782	chr10:88728287:-	LGALS1	10007	chr22:38071654:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	ADIRF-AS1->ADIRF_antisense_RNA_1,chr10:88725102-88731068:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HS688AT_FIBROBLAST	1	1	0.0358	TRUE	0	0	0	5	0	TRUE	ACH-000306
HS688AT_FIBROBLAST	PKM--SERPINE1	3	0	PKM	19656	chr15:72491974:-	SERPINE1	23331	chr7:100770440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	HS688AT_FIBROBLAST	1	1	0.0358	TRUE	0	0	0	4	0	TRUE	ACH-000306
HS688AT_FIBROBLAST	UBL3--SLC7A1	3	0	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	HS688AT_FIBROBLAST	1	1	0.0358	TRUE	1	5	0	8	1	TRUE	ACH-000306
HS688AT_FIBROBLAST	VIM--TMSB4X	3	0	VIM	2124	chr10:17271381:+	TMSB4X	12219	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS688AT_FIBROBLAST	1	1	0.0358	TRUE	0	0	0	3	0	TRUE	ACH-000306
HS688AT_FIBROBLAST	VIM--TMSB4X	3	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS688AT_FIBROBLAST	1	1	0.0358	TRUE	0	0	0	15	0	TRUE	ACH-000306
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	684	18	IGH@	95370	chr14:106329408:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1080	0	0.39	1	5.1931	0.1367	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	5.3298	TRUE	0	0	0	3	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A2--PTMA	154	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1692	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1692	TRUE	0	0	0	10	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	74	18	IGH@	94353	chr14:106330425:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1693	0	0.05	1	0.5618	0.1367	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.6985	TRUE	0	0	0	3	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	74	18	IGH@	94754	chr14:106330024:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1692	0	0.05	1	0.5618	0.1367	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.6985	TRUE	0	0	0	3	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	71	18	IGH@	93161	chr14:106331617:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1696	0	0.05	1	0.5391	0.1367	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.6758	TRUE	0	0	0	3	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP85--C1orf109	38	12	CEP85	8479	chr1:26586293:+	C1orf109	22178	chr1:38156110:-	ONLY_REF_SPLICE	YES	23	19	0.68	0.72	0.2885	0.0911	CEP85->centrosomal_protein_85,chr1:26560691-26605299:+,C1orf109->chr1:38147242-38157914:-,chromosome_1_open_reading_frame_109	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.72	0.3796	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.13--IGKV2-28	8	0	AC096579.13	1039	chr2:89161037:-	IGKV2-28	9107	chr2:89521489:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0607	0	AC096579.13->chr2:89109984-89161075:-,IGKV2-28->chr2:89521179-89521942:-,immunoglobulin_kappa_variable_2-28	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	TRUE	0	3	0	1	1	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNB1	8	0	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0607	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	TRUE	0	10	0	7	3	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	4	0	IGH@	95370	chr14:106329408:-	CASC11	135896	chr8:128715488:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0304	TRUE	0	0	0	2	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYCBP2--SLAIN1	3	0	MYCBP2	1577	chr13:77900609:-	SLAIN1	99139	chr13:78293667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Coronary=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellum=1},MYCBP2->MYC_binding_protein_2,_E3_ubiquitin_protein_ligase,chr13:77618792-77901185:-,SLAIN1->SLAIN_motif_family_member_1,chr13:78272023-78338377:+	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COA4--SETD6	2	0	COA4	1232	chr11:73587802:-	SETD6	10581	chr16:58551924:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	COA4->chr11:73583712-73588033:-,cytochrome_c_oxidase_assembly_factor_4_homolog,SETD6->SET_domain_containing_6,chr16:58549383-58554431:+	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKDC--MCM4	2	0	PRKDC	56276	chr8:48748899:-	MCM4	90076	chr8:48874076:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[2],PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNB1	2	0	RCC1	2175	chr1:28834672:+	GNB1	23173	chr1:1756938:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	3	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL5--EXO1	2	0	RPL5	6333	chr1:93303190:+	EXO1	22746	chr1:242030132:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,EXO1->chr1:242011269-242058450:+,exonuclease_1	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3A--PHF14	2	0	RPS3A	3799	chr4:152024231:+	PHF14	32888	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	RPS3A->chr4:152020725-152025804:+,ribosomal_protein_S3A,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SND1--IGL@	2	0	SND1	13407	chr7:127347701:+	IGL@	99972	chr22:23237555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,IGL@->Oncogene{Bushman}	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--XPO1	2	0	USP34	1120	chr2:61697785:-	XPO1	80582	chr2:61761038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	2	0	4	2	TRUE	ACH-000162
SNU685_ENDOMETRIUM	R3HDM2--CTDSP2	1032	194	R3HDM2	2356	chr12:57789532:-	CTDSP2	34864	chr12:58223379:-	ONLY_REF_SPLICE	YES	6	80	1	0.94	10.7249	2.0161	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,CTDSP2->CTD_small_phosphatase_2,chr12:58213710-58240522:-	SNU685_ENDOMETRIUM	0.94	1	12.741	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	LYPLA1--CCDC26	57	43	LYPLA1	2110	chr8:55013468:-	CCDC26	19874	chr8:130411930:-	ONLY_REF_SPLICE	YES	143	0	0.41	1	0.5924	0.4469	LYPLA1->chr8:54958938-55014577:-,lysophospholipase_I,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	SNU685_ENDOMETRIUM	0.41	1	1.0393	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	R3HDM2--CTDSP2	33	38	R3HDM2	1286	chr12:57824503:-	CTDSP2	34864	chr12:58223379:-	ONLY_REF_SPLICE	YES	2	80	0.97	0.47	0.3429	0.3949	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,CTDSP2->CTD_small_phosphatase_2,chr12:58213710-58240522:-	SNU685_ENDOMETRIUM	0.47	0.97	0.7378	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	FAM60A--CACNA1C	37	18	FAM60A	12639	chr12:31440568:-	CACNA1C	32480	chr12:2659109:+	ONLY_REF_SPLICE	YES	403	3	0.12	0.95	0.3845	0.1871	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,CACNA1C->calcium_voltage-gated_channel_subunit_alpha1_C,chr12:2079952-2802108:+	SNU685_ENDOMETRIUM	0.12	0.95	0.5716	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	FAM60A--CACNA1C	30	24	FAM60A	12639	chr12:31440568:-	CACNA1C	31405	chr12:2656616:+	ONLY_REF_SPLICE	YES	403	7	0.12	0.89	0.3118	0.2494	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,CACNA1C->calcium_voltage-gated_channel_subunit_alpha1_C,chr12:2079952-2802108:+	SNU685_ENDOMETRIUM	0.12	0.89	0.5612	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	LYPLA1--CCDC26	18	16	LYPLA1	2110	chr8:55013468:-	CCDC26	22124	chr8:130365226:-	ONLY_REF_SPLICE	YES	143	1	0.19	0.97	0.1871	0.1663	LYPLA1->chr8:54958938-55014577:-,lysophospholipase_I,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	SNU685_ENDOMETRIUM	0.19	0.97	0.3534	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	RAMP1--NDP	19	7	RAMP1	4311	chr2:238786004:+	NDP	10100	chrX:43818098:-	ONLY_REF_SPLICE	YES	95	0	0.21	1	0.1975	0.0727	RAMP1->Oncogene{Bushman},chr2:238767536-238820756:+,receptor_activity_modifying_protein_1,NDP->Norrie_disease_(pseudoglioma),chrX:43808022-43832750:-	SNU685_ENDOMETRIUM	0.21	1	0.2702	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	CD9--VWF	12	21	CD9	1851	chr12:6309731:+	VWF	15334	chr12:6232362:-	ONLY_REF_SPLICE	YES	198	0	0.14	1	0.1247	0.2182	LOCAL_INVERSION:+:-:[74945],CD9->CD9_molecule,Oncogene{Bushman},chr12:6308881-6347425:+,VWF->chr12:6058040-6233936:-,von_Willebrand_factor	SNU685_ENDOMETRIUM	0.14	1	0.3429	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	LYPLA1--CCDC26	6	44	LYPLA1	2110	chr8:55013468:-	CCDC26	18826	chr8:130492936:-	ONLY_REF_SPLICE	YES	143	0	0.26	1	0.0624	0.4573	LYPLA1->chr8:54958938-55014577:-,lysophospholipase_I,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	SNU685_ENDOMETRIUM	0.26	1	0.5197	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	BICD1--CASC1	14	5	BICD1	4185	chr12:32369393:+	CASC1	37927	chr12:25276220:-	ONLY_REF_SPLICE	YES	181	2	0.1	0.9	0.1455	0.052	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,CASC1->cancer_susceptibility_candidate_1,chr12:25261354-25348096:-	SNU685_ENDOMETRIUM	0.1	0.9	0.1975	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	DNM1L--RP11-551L14.1	8	3	DNM1L	2936	chr12:32854496:+	RP11-551L14.1	29163	chr12:31354169:-	ONLY_REF_SPLICE	YES	280	0	0.04	1	0.0831	0.0312	DNM1L->chr12:32832134-32898486:+,dynamin_1-like,RP11-551L14.1->chr12:31264586-31359088:-	SNU685_ENDOMETRIUM	0.04	1	0.1143	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	TARBP1--ARID4B	6	7	TARBP1	11795	chr1:234586174:-	ARID4B	40443	chr1:235424067:-	ONLY_REF_SPLICE	YES	77	46	0.14	0.22	0.0624	0.0727	TARBP1->TAR_(HIV-1)_RNA_binding_protein_1,chr1:234527059-234614849:-,ARID4B->AT-rich_interaction_domain_4B,chr1:235294949-235491534:-	SNU685_ENDOMETRIUM	0.14	0.22	0.1351	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	TMSB10--TMSB4X	4	0	TMSB10	1438	chr2:85133186:+	TMSB4X	6247	chrX:12994426:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU685_ENDOMETRIUM	1	1	0.0416	TRUE	0	1	0	17	1	TRUE	ACH-000407
SNU685_ENDOMETRIUM	DVL1--MMEL1	3	1	DVL1	1455	chr1:1284276:-	MMEL1	15359	chr1:2543643:-	ONLY_REF_SPLICE	YES	88	0	0.04	1	0.0312	0.0104	DVL1->chr1:1270656-1284730:-,dishevelled_segment_polarity_protein_1,MMEL1->chr1:2522078-2564481:-,membrane_metallo-endopeptidase-like_1	SNU685_ENDOMETRIUM	0.04	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	RPS6KB1--VMP1	3	0	RPS6KB1	5427	chr17:57990165:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SNU685_ENDOMETRIUM	1	1	0.0312	TRUE	0	5	0	6	5	TRUE	ACH-000407
SNU685_ENDOMETRIUM	TMSB10--TMSB4X	3	0	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU685_ENDOMETRIUM	1	1	0.0312	TRUE	0	1	0	17	1	TRUE	ACH-000407
SNU685_ENDOMETRIUM	XRN1--GRK7	2	1	XRN1	15682	chr3:142132977:-	GRK7	54640	chr3:141535556:+	ONLY_REF_SPLICE	YES	56	0	0.05	1	0.0208	0.0104	XRN1->5'-3'_exoribonuclease_1,chr3:142025449-142166904:-,GRK7->G_protein-coupled_receptor_kinase_7,chr3:141496990-141537332:+	SNU685_ENDOMETRIUM	0.05	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	COL16A1--BAI2	2	0	COL16A1	23359	chr1:32140859:-	BAI2	53619	chr1:32210332:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LOCAL_REARRANGEMENT:-:[22798],COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1,BAI2->chr1:32192718-32230494:-	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	CSNK2A1--ACACA	2	0	CSNK2A1	3515	chr20:508577:-	ACACA	50344	chr17:35620797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	RAMP1--NDP	2	0	RAMP1	1835	chr2:238768370:+	NDP	10100	chrX:43818098:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	RAMP1->Oncogene{Bushman},chr2:238767536-238820756:+,receptor_activity_modifying_protein_1,NDP->Norrie_disease_(pseudoglioma),chrX:43808022-43832750:-	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	RASA2--LRMP	2	0	RASA2	3392	chr3:141235273:+	LRMP	47715	chr12:25222284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	RPS6KB1--VMP1	2	0	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	9	0	11	6	TRUE	ACH-000407
SNU685_ENDOMETRIUM	SIL1--DNAJC18	2	0	SIL1	21983	chr5:138356860:-	DNAJC18	43363	chr5:138749961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,DNAJC18->DnaJ_heat_shock_protein_family_(Hsp40)_member_C18,chr5:138744279-138780180:-	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	TRAF2--COL5A1	2	0	TRAF2	8092	chr9:139794972:+	COL5A1	61169	chr9:137693800:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	KIF26B--SMYD3	1	2	KIF26B	2699	chr1:245319985:+	SMYD3	55692	chr1:246093239:-	ONLY_REF_SPLICE	YES	15	47	0.17	0.06	0.0104	0.0208	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	SNU685_ENDOMETRIUM	0.06	0.17	0.0312	TRUE	0	18	0	6	12	TRUE	ACH-000407
SNU685_ENDOMETRIUM	BACH1--ANTXR2	1	1	BACH1	1190	chr21:30566581:+	ANTXR2	47247	chr4:80899328:-	ONLY_REF_SPLICE	NO	5	44	0.29	0.04	0.0104	0.0104	BACH1->BTB_domain_and_CNC_homolog_1,chr21:30566392-31003071:+,ANTXR2->anthrax_toxin_receptor_2,chr4:80822303-81046608:-	SNU685_ENDOMETRIUM	0.04	0.29	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
HCC1937_BREAST	RP11-135A1.3--OPA1	372	156	RP11-135A1.3	1086	chr3:193809435:+	OPA1	35749	chr3:193409852:+	ONLY_REF_SPLICE	YES	0	243	1	0.68	4.0289	1.6895	RP11-135A1.3->chr3:193809350-193826963:+,OPA1->OPA1,_mitochondrial_dynamin_like_GTPase,chr3:193310933-193415612:+	HCC1937_BREAST	0.68	1	5.7184	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	RNF121--SCAF11	32	17	RNF121	3604	chr11:71671937:+	SCAF11	22103	chr12:46357971:-	ONLY_REF_SPLICE	YES	162	84	0.23	0.37	0.3466	0.1841	HGNC_GENEFAM,RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-	HCC1937_BREAST	0.23	0.37	0.5307	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	NFIA--EHF	32	14	NFIA	7204	chr1:61554352:+	EHF	39943	chr11:34673089:+	ONLY_REF_SPLICE	YES	8	185	0.85	0.2	0.3466	0.1516	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A,EHF->ETS_homologous_factor,chr11:34642640-34682604:+	HCC1937_BREAST	0.2	0.85	0.4982	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	GAB1--RP11-364L4.3	29	11	GAB1	1499	chr4:144258413:+	RP11-364L4.3	30578	chr4:144250432:+	ONLY_REF_SPLICE	YES	26	0	0.61	1	0.3141	0.1191	LOCAL_REARRANGEMENT:+:[6904],GAB1->GRB2_associated_binding_protein_1,Oncogene{Bushman},chr4:144257915-144395721:+,RP11-364L4.3->chr4:144207446-144251011:+	HCC1937_BREAST	0.61	1	0.4332	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	MYO5B--CCDC11	5	6	MYO5B	1327	chr18:47721137:-	CCDC11	57041	chr18:47778154:-	ONLY_REF_SPLICE	YES	6	1	0.65	0.92	0.0542	0.065	LOCAL_REARRANGEMENT:-:[32100],MYO5B->chr18:47349183-47721463:-,myosin_VB,CCDC11->chr18:47753563-47792892:-	HCC1937_BREAST	0.65	0.92	0.1192	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	UBE2E2--AC092661.1	6	1	UBE2E2	1243	chr3:23244753:+	AC092661.1	22259	chr4:118575962:+	ONLY_REF_SPLICE	YES	32	0	0.18	1	0.065	0.0108	UBE2E2->chr3:23244511-23633284:+,ubiquitin_conjugating_enzyme_E2_E2,AC092661.1->chr4:118349552-118612343:+	HCC1937_BREAST	0.18	1	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	RNF121--SCAF11	1	18	RNF121	4742	chr11:71673335:+	SCAF11	22103	chr12:46357971:-	ONLY_REF_SPLICE	YES	165	84	0.1	0.18	0.0108	0.1949	HGNC_GENEFAM,RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-	HCC1937_BREAST	0.1	0.18	0.2057	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	SMG1--MYH14	1	17	SMG1	17623	chr16:18888453:-	MYH14	82466	chr19:50747499:+	ONLY_REF_SPLICE	NO	62	147	0.23	0.11	0.0108	0.1841	SMG1->SMG1_phosphatidylinositol_3-kinase-related_kinase,chr16:18816175-18937776:-,MYH14->chr19:50691443-50813802:+,myosin,_heavy_chain_14,_non-muscle	HCC1937_BREAST	0.11	0.23	0.1949	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	LY6E--S100A6	5	0	LY6E	4687	chr8:144103227:+	S100A6	9963	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HCC1937_BREAST	1	1	0.0542	TRUE	0	0	0	7	0	TRUE	ACH-000223
HCC1937_BREAST	EIF1--PPIA	3	1	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	13	0	0.24	1	0.0325	0.0108	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	HCC1937_BREAST	0.24	1	0.0433	TRUE	0	0	0	7	0	TRUE	ACH-000223
HCC1937_BREAST	LY6E--S100A6	3	0	LY6E	4707	chr8:144103247:+	S100A6	10598	chr1:153507832:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HCC1937_BREAST	1	1	0.0325	TRUE	0	0	0	7	0	TRUE	ACH-000223
HCC1937_BREAST	MYO5B--CCDC11	1	5	MYO5B	1327	chr18:47721137:-	CCDC11	57849	chr18:47777346:-	ONLY_REF_SPLICE	YES	6	2	0.5	0.75	0.0108	0.0542	LOCAL_REARRANGEMENT:-:[32100],MYO5B->chr18:47349183-47721463:-,myosin_VB,CCDC11->chr18:47753563-47792892:-	HCC1937_BREAST	0.5	0.75	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	WNT5B--CPEB1	2	1	WNT5B	2060	chr12:1640116:+	CPEB1	26761	chr15:83296118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0.0108	WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+,CPEB1->chr15:83211951-83317612:-,cytoplasmic_polyadenylation_element_binding_protein_1	HCC1937_BREAST	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	CTNNA1--ETF1	2	0	CTNNA1	5795	chr5:138089199:+	ETF1	47262	chr5:137849395:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LOCAL_INVERSION:+:-:[67667],CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1	HCC1937_BREAST	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	FAM83H-AS1--SHARPIN	2	0	FAM83H-AS1	3722	chr8:144822118:+	SHARPIN	16250	chr8:145158128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	FAM83H-AS1->FAM83H_antisense_RNA_1_(head_to_head),chr8:144816310-144828507:+,SHARPIN->SHANK_associated_RH_domain_interactor,chr8:145153536-145163027:-	HCC1937_BREAST	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	TMEM87A--SDHAP1	2	0	TMEM87A	14117	chr15:42528518:-	SDHAP1	45141	chr3:195686957:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TMEM87A->chr15:42502730-42565861:-,transmembrane_protein_87A,SDHAP1->chr3:195686619-195717189:-,succinate_dehydrogenase_complex_flavoprotein_subunit_A_pseudogene_1	HCC1937_BREAST	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000223
KLE_ENDOMETRIUM	SRSF5--KIAA0247	335	135	SRSF5	3434	chr14:70233972:+	KIAA0247	14855	chr14:70170112:+	ONLY_REF_SPLICE	YES	149	21	0.76	0.96	4.8149	1.9403	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[11758],SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5,KIAA0247->chr14:70078313-70181859:+	KLE_ENDOMETRIUM	0.76	0.96	6.7552	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	SRSF5--KIAA0247	143	132	SRSF5	3430	chr14:70233968:+	KIAA0247	14855	chr14:70170112:+	ONLY_REF_SPLICE	YES	139	21	0.66	0.93	2.0553	1.8972	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[11758],SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5,KIAA0247->chr14:70078313-70181859:+	KLE_ENDOMETRIUM	0.66	0.93	3.9525	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	PGAP3--GSDMB	37	20	PGAP3	4973	chr17:37840850:-	GSDMB	22558	chr17:38062238:-	ONLY_REF_SPLICE	YES	41	9	0.58	0.86	0.5318	0.2875	{Klijn_CCL:Uterus=1},PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,GSDMB->chr17:38060848-38076107:-,gasdermin_B	KLE_ENDOMETRIUM	0.58	0.86	0.8193	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	SRSF5--KIAA0247	3	139	SRSF5	3559	chr14:70234097:+	KIAA0247	14855	chr14:70170112:+	ONLY_REF_SPLICE	YES	355	21	0.29	0.87	0.0431	1.9978	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[11758],SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5,KIAA0247->chr14:70078313-70181859:+	KLE_ENDOMETRIUM	0.29	0.87	2.0409	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	SRSF5--KIAA0247	2	139	SRSF5	4166	chr14:70234704:+	KIAA0247	14855	chr14:70170112:+	ONLY_REF_SPLICE	YES	360	21	0.28	0.87	0.0287	1.9978	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[11758],SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5,KIAA0247->chr14:70078313-70181859:+	KLE_ENDOMETRIUM	0.28	0.87	2.0265	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	RERE--ENO1	31	8	RERE	1484	chr1:8877219:-	ENO1	42962	chr1:8934976:-	ONLY_REF_SPLICE	YES	3	1974	0.93	0.02	0.4456	0.115	LOCAL_REARRANGEMENT:-:[43359],RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	KLE_ENDOMETRIUM	0.02	0.93	0.5606	TRUE	0	6	0	2	3	TRUE	ACH-000293
KLE_ENDOMETRIUM	PGAP3--GSDMB	6	20	PGAP3	4973	chr17:37840850:-	GSDMB	18619	chr17:38066177:-	ONLY_REF_SPLICE	YES	41	2	0.39	0.93	0.0862	0.2875	{Klijn_CCL:Uterus=1},PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,GSDMB->chr17:38060848-38076107:-,gasdermin_B	KLE_ENDOMETRIUM	0.39	0.93	0.3737	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	CDH23--FAM110D	8	2	CDH23	47084	chr10:73501678:+	FAM110D	78231	chr1:26487703:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.115	0.0287	{Klijn_CCL:Uterus=1},CDH23->cadherin-related_23,chr10:73156691-73575702:+,FAM110D->chr1:26485511-26489119:+,family_with_sequence_similarity_110_member_D	KLE_ENDOMETRIUM	1	1	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	SRSF5--KIAA0247	1	26	SRSF5	3434	chr14:70233972:+	KIAA0247	16064	chr14:70171321:+	ONLY_REF_SPLICE	NO	149	111	0.15	0.2	0.0144	0.3737	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[11758],SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5,KIAA0247->chr14:70078313-70181859:+	KLE_ENDOMETRIUM	0.15	0.2	0.3881	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	NSUN4--NCCRP1	5	5	NSUN4	7353	chr1:46812747:+	NCCRP1	16914	chr19:39687551:+	INCL_NON_REF_SPLICE	YES	78	0	0.11	1	0.0719	0.0719	{Klijn_CCL:Uterus=1},NSUN4->NOP2/Sun_RNA_methyltransferase_family_member_4,chr1:46805849-46830824:+,NCCRP1->chr19:39687601-39692524:+,non-specific_cytotoxic_cell_receptor_protein_1_homolog_(zebrafish)	KLE_ENDOMETRIUM	0.11	1	0.1438	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	PGAP3--GSDMB	1	20	PGAP3	4973	chr17:37840850:-	GSDMB	19501	chr17:38065295:-	ONLY_REF_SPLICE	NO	41	3	0.34	0.88	0.0144	0.2875	{Klijn_CCL:Uterus=1},PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,GSDMB->chr17:38060848-38076107:-,gasdermin_B	KLE_ENDOMETRIUM	0.34	0.88	0.3019	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	ADCY9--ZSCAN32	4	2	ADCY9	3436	chr16:4163751:-	ZSCAN32	31939	chr16:3434941:-	ONLY_REF_SPLICE	YES	4	11	0.6	0.35	0.0575	0.0287	ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,ZSCAN32->chr16:3432085-3451065:-,zinc_finger_and_SCAN_domain_containing_32	KLE_ENDOMETRIUM	0.35	0.6	0.0862	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	EXOC4--LMTK2	4	1	EXOC4	5516	chr7:132990815:+	LMTK2	50255	chr7:97800853:+	ONLY_REF_SPLICE	YES	8	12	0.38	0.29	0.0575	0.0144	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2	KLE_ENDOMETRIUM	0.29	0.38	0.0719	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	NSUN4--NCCRP1	3	5	NSUN4	7353	chr1:46812747:+	NCCRP1	16910	chr19:39687547:+	INCL_NON_REF_SPLICE	YES	78	0	0.09	1	0.0431	0.0719	{Klijn_CCL:Uterus=1},NSUN4->NOP2/Sun_RNA_methyltransferase_family_member_4,chr1:46805849-46830824:+,NCCRP1->chr19:39687601-39692524:+,non-specific_cytotoxic_cell_receptor_protein_1_homolog_(zebrafish)	KLE_ENDOMETRIUM	0.09	1	0.115	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	AFAP1L2--RP11-1220K2.2	4	0	AFAP1L2	6765	chr10:116091562:-	RP11-1220K2.2	56578	chr7:141883066:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0575	0	AFAP1L2->actin_filament_associated_protein_1_like_2,chr10:116054583-116164515:-,RP11-1220K2.2->chr7:141811549-141922124:+	KLE_ENDOMETRIUM	1	1	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	CTD-2023N9.1--RUNX2	4	0	CTD-2023N9.1	3408	chr5:56792744:+	RUNX2	25854	chr6:45630852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0575	0	CTD-2023N9.1->chr5:56690887-56829251:+,RUNX2->Oncogene{Bushman},chr6:45295894-45632086:+,runt_related_transcription_factor_2	KLE_ENDOMETRIUM	1	1	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	RCC1--CTD-2354A18.1	4	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0575	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	KLE_ENDOMETRIUM	1	1	0.0575	TRUE	0	1	0	7	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	SPINT2--KRT18	4	0	SPINT2	9728	chr19:38782783:+	KRT18	13710	chr12:53343165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0	SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2,KRT18->chr12:53342655-53346685:+,keratin_18	KLE_ENDOMETRIUM	1	1	0.0575	TRUE	0	0	0	2	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	AC010970.2--RPL13A	3	0	AC010970.2	1597	chrY:10036115:-	RPL13A	6620	chr19:49994036:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	AC010970.2->chrY:10036113-10036711:-,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	KLE_ENDOMETRIUM	1	1	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	AP5Z1--EIF3B	3	0	AP5Z1	1135	chr7:4815387:+	EIF3B	27869	chr7:2412308:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0	AP5Z1->adaptor_related_protein_complex_5_zeta_1_subunit,chr7:4815253-4833943:+,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	KLE_ENDOMETRIUM	1	1	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	CAPZB--EPHA2	3	0	CAPZB	1137	chr1:19811930:-	EPHA2	31626	chr1:16456063:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-	KLE_ENDOMETRIUM	1	1	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	RCC1--RHOA	3	0	RCC1	2175	chr1:28834672:+	RHOA	22152	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	KLE_ENDOMETRIUM	1	1	0.0431	TRUE	0	1	0	6	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	NSUN4--NCCRP1	2	3	NSUN4	7353	chr1:46812747:+	NCCRP1	18056	chr19:39688693:+	ONLY_REF_SPLICE	YES	78	2	0.06	0.71	0.0287	0.0431	{Klijn_CCL:Uterus=1},NSUN4->NOP2/Sun_RNA_methyltransferase_family_member_4,chr1:46805849-46830824:+,NCCRP1->chr19:39687601-39692524:+,non-specific_cytotoxic_cell_receptor_protein_1_homolog_(zebrafish)	KLE_ENDOMETRIUM	0.06	0.71	0.0718	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	PGAP3--GSDMB	1	7	PGAP3	3664	chr17:37842175:-	GSDMB	22558	chr17:38062238:-	ONLY_REF_SPLICE	YES	16	9	0.33	0.47	0.0144	0.1006	{Klijn_CCL:Uterus=1},PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,GSDMB->chr17:38060848-38076107:-,gasdermin_B	KLE_ENDOMETRIUM	0.33	0.47	0.115	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	PVT1--ANKRD55	2	1	PVT1	8346	chr8:128903244:+	ANKRD55	29956	chr5:55479461:-	ONLY_REF_SPLICE	YES	28	1	0.1	0.75	0.0287	0.0144	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ANKRD55->ankyrin_repeat_domain_55,chr5:55395507-55529186:-	KLE_ENDOMETRIUM	0.1	0.75	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	CAPZA2--LENG8	2	0	CAPZA2	3371	chr7:116502704:+	LENG8	36724	chr19:54971946:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8	KLE_ENDOMETRIUM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	PELI1--RAB1A	2	0	PELI1	1374	chr2:64371215:-	RAB1A	17536	chr2:65331940:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1,RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-	KLE_ENDOMETRIUM	1	1	0.0287	TRUE	1	1	0	1	1	TRUE	ACH-000293
KLE_ENDOMETRIUM	PLXNA1--COL18A1	2	0	PLXNA1	3377	chr3:126710409:+	COL18A1	37349	chr21:46893809:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	PLXNA1->chr3:126707437-126756235:+,plexin_A1,COL18A1->chr21:46825052-46933634:+,collagen_type_XVIII_alpha_1	KLE_ENDOMETRIUM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	SH3PXD2B--LAMTOR4	2	0	SH3PXD2B	3403	chr5:171833281:-	LAMTOR4	25570	chr7:99747122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	SH3PXD2B->SH3_and_PX_domains_2B,chr5:171752185-171881527:-,LAMTOR4->chr7:99746530-99753567:+,late_endosomal/lysosomal_adaptor,_MAPK_and_MTOR_activator_4	KLE_ENDOMETRIUM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	TMTC1--NCBP2	2	0	TMTC1	14722	chr12:29757111:-	NCBP2	46181	chr3:196663953:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	TMTC1->chr12:29653773-29937692:-,transmembrane_and_tetratricopeptide_repeat_containing_1,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	KLE_ENDOMETRIUM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	ADCY9--ZSCAN32	1	3	ADCY9	3436	chr16:4163751:-	ZSCAN32	27712	chr16:3447744:-	ONLY_REF_SPLICE	YES	4	1	0.5	0.8	0.0144	0.0431	ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,ZSCAN32->chr16:3432085-3451065:-,zinc_finger_and_SCAN_domain_containing_32	KLE_ENDOMETRIUM	0.5	0.8	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	PGAP3--GSDMB	1	3	PGAP3	4973	chr17:37840850:-	GSDMB	23047	chr17:38061749:-	ONLY_REF_SPLICE	NO	41	17	0.09	0.19	0.0144	0.0431	{Klijn_CCL:Uterus=1},PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,GSDMB->chr17:38060848-38076107:-,gasdermin_B	KLE_ENDOMETRIUM	0.09	0.19	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	CCDC102B--CDH19	1	1	CCDC102B	2386	chr18:66383831:+	CDH19	25356	chr18:64239553:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0144	0.0144	CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B,CDH19->cadherin_19,chr18:64168320-64271375:-	KLE_ENDOMETRIUM	0.5	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000293
SKNSH_AUTONOMIC_GANGLIA	EXOC4--PVT1	22	12	EXOC4	9042	chr7:133059756:+	PVT1	63632	chr8:129108764:+	ONLY_REF_SPLICE	YES	91	7	0.27	0.83	0.2589	0.1412	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	SKNSH_AUTONOMIC_GANGLIA	0.27	0.83	0.4001	TRUE	0	0	0	1	0	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	EXOC4--PVT1	5	14	EXOC4	9042	chr7:133059756:+	PVT1	61334	chr8:129082406:+	ONLY_REF_SPLICE	YES	91	7	0.17	0.73	0.0588	0.1647	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	SKNSH_AUTONOMIC_GANGLIA	0.17	0.73	0.2235	TRUE	0	0	0	1	0	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PVT1--EXOC4	5	6	PVT1	18060	chr8:129022690:+	EXOC4	39866	chr7:133160082:+	ONLY_REF_SPLICE	YES	8	90	0.58	0.11	0.0588	0.0706	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	SKNSH_AUTONOMIC_GANGLIA	0.11	0.58	0.1294	TRUE	0	0	0	1	0	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	EXOC4--PVT1	1	12	EXOC4	9042	chr7:133059756:+	PVT1	63635	chr8:129108767:+	ONLY_REF_SPLICE	YES	91	6	0.12	0.68	0.0118	0.1412	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	SKNSH_AUTONOMIC_GANGLIA	0.12	0.68	0.153	TRUE	0	0	0	1	0	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PRKCSH--LGALS1	4	0	PRKCSH	11051	chr19:11560150:+	LGALS1	15725	chr22:38071655:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	PRKCSH->chr19:11546109-11561783:+,protein_kinase_C_substrate_80K-H,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	SKNSH_AUTONOMIC_GANGLIA	1	1	0.0471	TRUE	0	0	0	3	0	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	FGFR2--ATE1	2	2	FGFR2	4111	chr10:123353223:-	ATE1	51958	chr10:123503373:-	ONLY_REF_SPLICE	YES	2	35	0.67	0.1	0.0235	0.0235	{Klijn_CCL:Breast=1,Stomach=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,ATE1->arginyltransferase_1,chr10:123499939-123688316:-	SKNSH_AUTONOMIC_GANGLIA	0.1	0.67	0.047	TRUE	0	1	0	1	1	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PVT1--EXOC4	2	2	PVT1	10746	chr8:128951922:+	EXOC4	39866	chr7:133160082:+	ONLY_REF_SPLICE	YES	9	90	0.31	0.04	0.0235	0.0235	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	SKNSH_AUTONOMIC_GANGLIA	0.04	0.31	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PVT1--EXOC4	1	3	PVT1	17334	chr8:129021964:+	EXOC4	39866	chr7:133160082:+	ONLY_REF_SPLICE	YES	8	90	0.33	0.04	0.0118	0.0353	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	SKNSH_AUTONOMIC_GANGLIA	0.04	0.33	0.0471	TRUE	0	0	0	1	0	TRUE	ACH-000149
CHP212_AUTONOMIC_GANGLIA	AC096559.1--GREB1	2	1	AC096559.1	10319	chr2:12448910:+	GREB1	25173	chr2:11696580:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0217	0.0108	AC096559.1->chr2:11988748-12718474:+,GREB1->chr2:11674242-11782914:+,growth_regulation_by_estrogen_in_breast_cancer_1	CHP212_AUTONOMIC_GANGLIA	0.75	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	AC096559.1--GREB1	2	1	AC096559.1	13591	chr2:12480427:+	GREB1	25173	chr2:11696580:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0217	0.0108	AC096559.1->chr2:11988748-12718474:+,GREB1->chr2:11674242-11782914:+,growth_regulation_by_estrogen_in_breast_cancer_1	CHP212_AUTONOMIC_GANGLIA	0.75	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	CALM2--C9orf3	2	0	CALM2	1161	chr2:47403580:-	C9orf3	51730	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	EYA4--FARS2	2	0	EYA4	7372	chr6:133595951:+	FARS2	43282	chr6:5545413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	EYA4->EYA_transcriptional_coactivator_and_phosphatase_4,Oncogene{Bushman},chr6:133561736-133853258:+,FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	HIBADH--SMURF2	2	0	HIBADH	6024	chr7:27668990:-	SMURF2	25322	chr17:62574694:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	HNRNPH1--WHSC1	2	0	HNRNPH1	4526	chr5:179050038:-	WHSC1	22624	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MRPS21--BAZ2A	2	0	MRPS21	1581	chr1:150266869:+	BAZ2A	12650	chr12:57007922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	MRPS21->chr1:150266289-150281414:+,mitochondrial_ribosomal_protein_S21,BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	PHF7--FAM208A	2	0	PHF7	4385	chr3:52448603:+	FAM208A	14014	chr3:56707753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PHF7->PHD_finger_protein_7,chr3:52444673-52457657:+,FAM208A->chr3:56654161-56717265:-,family_with_sequence_similarity_208_member_A	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000120
SF539_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--IFI27	12	5	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	2892	2	0.01	0.89	0.1059	0.0441	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	SF539_CENTRAL_NERVOUS_SYSTEM	0.01	0.89	0.15	TRUE	0	2	0	13	2	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	ERC1--CCDC77	4	2	ERC1	6700	chr12:1137738:+	CCDC77	48868	chr12:514677:+	ONLY_REF_SPLICE	YES	11	10	0.35	0.38	0.0353	0.0176	ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	SF539_CENTRAL_NERVOUS_SYSTEM	0.35	0.38	0.0529	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	FBXO46--RAB8A	3	0	FBXO46	2080	chr19:46226731:-	RAB8A	13726	chr19:16232560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	FBXO46->F-box_protein_46,chr19:46213887-46234162:-,RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	ERC1--CCDC77	2	2	ERC1	6700	chr12:1137738:+	CCDC77	49922	chr12:518534:+	ONLY_REF_SPLICE	YES	11	16	0.27	0.2	0.0176	0.0176	ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	SF539_CENTRAL_NERVOUS_SYSTEM	0.2	0.27	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	ERC1--CCDC77	2	2	ERC1	6700	chr12:1137738:+	CCDC77	51336	chr12:520913:+	ONLY_REF_SPLICE	YES	11	25	0.27	0.14	0.0176	0.0176	ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	SF539_CENTRAL_NERVOUS_SYSTEM	0.14	0.27	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	APIP--LDLRAD3	2	0	APIP	1272	chr11:34937775:-	LDLRAD3	27528	chr11:36248635:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	APIP->APAF1_interacting_protein,chr11:34874641-34938046:-,LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	CCDC77--ERC1	2	0	CCDC77	14934	chr12:547720:+	ERC1	25896	chr12:1136914:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	HAGH--MRPL14	2	0	HAGH	6114	chr16:1869116:-	MRPL14	18681	chr6:44084366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,MRPL14->chr6:44081194-44095194:-,mitochondrial_ribosomal_protein_L14	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	IFI44L--NPHP3	2	0	IFI44L	1650	chr1:79086256:+	NPHP3	40710	chr3:132410130:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	IFI44L->chr1:79085607-79111830:+,interferon_induced_protein_44_like,NPHP3->chr3:132276986-132441303:-,nephronophthisis_3_(adolescent)	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	JARID2--RP11-277P12.20	2	0	JARID2	3478	chr6:15374483:+	RP11-277P12.20	29374	chr12:10526634:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,RP11-277P12.20->chr12:10516368-10551105:+	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	MEF2A--LRRC28	2	0	MEF2A	6729	chr15:100173378:+	LRRC28	48619	chr15:99926235:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=3;pct=0.03%;dist=Ovary=1,Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},LOCAL_REARRANGEMENT:+:[86436],MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	2	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	NDUFV2--RALBP1	2	0	NDUFV2	1168	chr18:9102795:+	RALBP1	18205	chr18:9512989:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+,RALBP1->chr18:9475007-9538114:+,ralA_binding_protein_1	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	PLXNA1--RERE	2	0	PLXNA1	22272	chr3:126748907:+	RERE	65150	chr1:8416306:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	PLXNA1->chr3:126707437-126756235:+,plexin_A1,RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	CCDC77--ERC1	1	1	CCDC77	14934	chr12:547720:+	ERC1	24469	chr12:1129841:+	ONLY_REF_SPLICE	YES	29	6	0.06	0.25	0.0088	0.0088	CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	SF539_CENTRAL_NERVOUS_SYSTEM	0.06	0.25	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
NCIH810_LUNG	KCNH6--ACE	188	117	KCNH6	1156	chr17:61600850:+	ACE	32405	chr17:61570797:+	ONLY_REF_SPLICE	YES	124	68	0.71	0.82	2.0469	1.2739	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:+,chr17:[1490],KCNH6->chr17:61600695-61626338:+,potassium_voltage-gated_channel_subfamily_H_member_6,ACE->angiotensin_I_converting_enzyme,chr17:61554422-61599205:+,chr17:61562184-61599209:+	NCIH810_LUNG	0.71	0.82	3.3208	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CCDC57--CCNE1	142	56	CCDC57	29723	chr17:80085568:-	CCNE1	42403	chr19:30303439:+	ONLY_REF_SPLICE	YES	36	0	0.85	1	1.546	0.6097	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CCNE1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:30302805-30315215:+,cyclin_E1	NCIH810_LUNG	0.85	1	2.1557	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	KCNH6--ACE	107	47	KCNH6	1156	chr17:61600850:+	ACE	32891	chr17:61571283:+	ONLY_REF_SPLICE	YES	124	114	0.55	0.57	1.165	0.5117	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:+,chr17:[1490],KCNH6->chr17:61600695-61626338:+,potassium_voltage-gated_channel_subfamily_H_member_6,ACE->angiotensin_I_converting_enzyme,chr17:61554422-61599205:+,chr17:61562184-61599209:+	NCIH810_LUNG	0.55	0.57	1.6767	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	JAGN1--TTLL3	71	34	JAGN1	1258	chr3:9932495:+	TTLL3	10382	chr3:9854627:+	ONLY_REF_SPLICE	YES	138	5	0.43	0.95	0.773	0.3702	LOCAL_REARRANGEMENT:+:[35416],JAGN1->chr3:9932238-9936033:+,jagunal_homolog_1,TTLL3->Oncogene{Bushman},chr3:9849770-9896822:+,tubulin_tyrosine_ligase_like_3	NCIH810_LUNG	0.43	0.95	1.1432	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CNOT1--RP11-481J2.2	61	17	CNOT1	16673	chr16:58608513:-	RP11-481J2.2	53823	chr16:58469596:+	ONLY_REF_SPLICE	YES	60	0	0.57	1	0.6641	0.1851	LOCAL_INVERSION:-:+:[57481],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,RP11-481J2.2->chr16:58455230-58496374:+	NCIH810_LUNG	0.57	1	0.8492	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	GOLPH3L--PTPLAD1	51	28	GOLPH3L	2358	chr1:150667132:-	PTPLAD1	16759	chr15:65844014:+	ONLY_REF_SPLICE	YES	82	334	0.49	0.19	0.5553	0.3049	{Klijn_CCL:Lung=1},GOLPH3L->chr1:150618701-150669630:-,golgi_phosphoprotein_3_like,PTPLAD1->chr15:65822756-65870687:+	NCIH810_LUNG	0.19	0.49	0.8602	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CTC-525D6.1--CYP2G2P	48	21	CTC-525D6.1	1329	chr19:30016331:-	CYP2G2P	20170	chr19:41561248:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5226	0.2286	CTC-525D6.1->chr19:29777918-30016659:-,CYP2G2P->chr19:41556354-41568349:-,cytochrome_P450_family_2_subfamily_G_member_2,_pseudogene	NCIH810_LUNG	1	1	0.7512	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	KCNH6--ACE	13	123	KCNH6	1156	chr17:61600850:+	ACE	22985	chr17:61559827:+	ONLY_REF_SPLICE	YES	124	71	0.52	0.66	0.1415	1.3392	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:+,chr17:[1490],KCNH6->chr17:61600695-61626338:+,potassium_voltage-gated_channel_subfamily_H_member_6,ACE->angiotensin_I_converting_enzyme,chr17:61554422-61599205:+,chr17:61562184-61599209:+	NCIH810_LUNG	0.52	0.66	1.4807	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	DHRS7B--PKHD1	36	3	DHRS7B	2421	chr17:21030304:+	PKHD1	87546	chr6:51514018:-	ONLY_REF_SPLICE	YES	2	9	0.95	0.81	0.392	0.0327	{Klijn_CCL:Lung=1},DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	NCIH810_LUNG	0.81	0.95	0.4247	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CGGBP1--TBC1D5	25	11	CGGBP1	2284	chr3:88190120:-	TBC1D5	48839	chr3:17349626:-	ONLY_REF_SPLICE	YES	5	12	0.88	0.75	0.2722	0.1198	CGGBP1->CGG_triplet_repeat_binding_protein_1,chr3:88101094-88199035:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH810_LUNG	0.75	0.88	0.392	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	PDPK1--RBFOX1	24	15	PDPK1	9922	chr16:2616454:+	RBFOX1	43518	chr16:7568149:+	ONLY_REF_SPLICE	YES	20	4	0.66	0.91	0.2613	0.1633	PDPK1->3-phosphoinositide_dependent_protein_kinase_1,chr16:2587965-2653189:+,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	NCIH810_LUNG	0.66	0.91	0.4246	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CCDC57--CCNE1	17	38	CCDC57	29723	chr17:80085568:-	CCNE1	42560	chr19:30303596:+	ONLY_REF_SPLICE	YES	36	23	0.6	0.71	0.1851	0.4137	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CCNE1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:30302805-30315215:+,cyclin_E1	NCIH810_LUNG	0.6	0.71	0.5988	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	YARS--CSMD2	23	1	YARS	1966	chr1:33282789:-	CSMD2	25777	chr1:34383902:-	ONLY_REF_SPLICE	YES	129	0	0.16	1	0.2504	0.0109	YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase,CSMD2->CUB_and_Sushi_multiple_domains_2,chr1:33979609-34631443:-	NCIH810_LUNG	0.16	1	0.2613	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	SLC25A51--RP11-237M21.1	22	0	SLC25A51	1286	chr9:37904065:-	RP11-237M21.1	14022	chr9:65707604:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2395	0	SLC25A51->chr9:37879400-37904350:-,solute_carrier_family_25_member_51,RP11-237M21.1->chr9:65696702-65725786:-	NCIH810_LUNG	1	1	0.2395	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	ADARB2--C20orf26	21	3	ADARB2	1426	chr10:1779245:-	C20orf26	65881	chr20:20340854:+	ONLY_REF_SPLICE	YES	2	3	0.92	0.89	0.2286	0.0327	ADARB2->Oncogene{Bushman},adenosine_deaminase,_RNA_specific_B2_(inactive),chr10:1228073-1779670:-,C20orf26->chr20:20033158-20341346:+	NCIH810_LUNG	0.89	0.92	0.2613	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	DHRS7B--PKHD1	20	5	DHRS7B	2421	chr17:21030304:+	PKHD1	85528	chr6:51524767:-	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.2178	0.0544	{Klijn_CCL:Lung=1},DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	NCIH810_LUNG	0.93	1	0.2722	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	PDPK1--RBFOX1	12	16	PDPK1	9922	chr16:2616454:+	RBFOX1	38591	chr16:7378649:+	ONLY_REF_SPLICE	YES	20	0	0.58	1	0.1307	0.1742	PDPK1->3-phosphoinositide_dependent_protein_kinase_1,chr16:2587965-2653189:+,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	NCIH810_LUNG	0.58	1	0.3049	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	GOLPH3L--PTPLAD1	5	29	GOLPH3L	2906	chr1:150666584:-	PTPLAD1	16759	chr15:65844014:+	ONLY_REF_SPLICE	YES	77	334	0.31	0.09	0.0544	0.3157	{Klijn_CCL:Lung=1},GOLPH3L->chr1:150618701-150669630:-,golgi_phosphoprotein_3_like,PTPLAD1->chr15:65822756-65870687:+	NCIH810_LUNG	0.09	0.31	0.3701	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	JAGN1--TTLL3	4	31	JAGN1	1258	chr3:9932495:+	TTLL3	10385	chr3:9854630:+	ONLY_REF_SPLICE	YES	138	5	0.2	0.88	0.0436	0.3375	LOCAL_REARRANGEMENT:+:[35416],JAGN1->chr3:9932238-9936033:+,jagunal_homolog_1,TTLL3->Oncogene{Bushman},chr3:9849770-9896822:+,tubulin_tyrosine_ligase_like_3	NCIH810_LUNG	0.2	0.88	0.3811	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	SLC25A51--RP11-237M21.1	10	1	SLC25A51	1823	chr9:37903528:-	RP11-237M21.1	14022	chr9:65707604:-	INCL_NON_REF_SPLICE	YES	9	0	0.55	1	0.1089	0.0109	SLC25A51->chr9:37879400-37904350:-,solute_carrier_family_25_member_51,RP11-237M21.1->chr9:65696702-65725786:-	NCIH810_LUNG	0.55	1	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	SLC25A51--RP11-237M21.1	9	1	SLC25A51	1823	chr9:37903528:-	RP11-237M21.1	14011	chr9:65707615:-	INCL_NON_REF_SPLICE	YES	9	0	0.53	1	0.098	0.0109	SLC25A51->chr9:37879400-37904350:-,solute_carrier_family_25_member_51,RP11-237M21.1->chr9:65696702-65725786:-	NCIH810_LUNG	0.53	1	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	NPM1P4--NCL	8	0	NPM1P4	1488	chr13:28270854:-	NCL	10591	chr2:232325485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	NCIH810_LUNG	1	1	0.0871	TRUE	0	0	0	3	0	TRUE	ACH-000789
NCIH810_LUNG	PDPK1--RBFOX1	7	3	PDPK1	7316	chr16:2611523:+	RBFOX1	43518	chr16:7568149:+	ONLY_REF_SPLICE	YES	29	4	0.26	0.71	0.0762	0.0327	PDPK1->3-phosphoinositide_dependent_protein_kinase_1,chr16:2587965-2653189:+,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	NCIH810_LUNG	0.26	0.71	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	SLC25A51--RP11-237M21.1	7	0	SLC25A51	1286	chr9:37904065:-	RP11-237M21.1	14011	chr9:65707615:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0762	0	SLC25A51->chr9:37879400-37904350:-,solute_carrier_family_25_member_51,RP11-237M21.1->chr9:65696702-65725786:-	NCIH810_LUNG	1	1	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	U73166.2--GNAI2	7	0	U73166.2	3761	chr3:50300495:+	GNAI2	19414	chr3:50293624:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0762	0	LOCAL_REARRANGEMENT:+:[948],U73166.2->chr3:50297735-50300790:+,GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+	NCIH810_LUNG	1	1	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	PCCA--CLYBL	6	2	PCCA	10753	chr13:100861717:+	CLYBL	38523	chr13:100511115:+	ONLY_REF_SPLICE	YES	27	12	0.23	0.4	0.0653	0.0218	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],{Klijn_CCL:Lung=1},PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit,CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like	NCIH810_LUNG	0.23	0.4	0.0871	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	RP11-347C12.2--LZIC	5	4	RP11-347C12.2	7835	chr16:30305887:-	LZIC	43265	chr1:9992030:-	ONLY_REF_SPLICE	YES	39	79	0.19	0.1	0.0544	0.0436	RP11-347C12.2->chr16:30234230-30346695:-,LZIC->chr1:9982173-10003465:-,leucine_zipper_and_CTNNBIP1_domain_containing	NCIH810_LUNG	0.1	0.19	0.098	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CTC-525D6.1--CYP2G2P	3	10	CTC-525D6.1	1282	chr19:30016378:-	CYP2G2P	20170	chr19:41561248:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.1089	CTC-525D6.1->chr19:29777918-30016659:-,CYP2G2P->chr19:41556354-41568349:-,cytochrome_P450_family_2_subfamily_G_member_2,_pseudogene	NCIH810_LUNG	1	1	0.1416	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	WASF2--IFI6	5	2	WASF2	1173	chr1:27816497:-	IFI6	18294	chr1:27995857:-	ONLY_REF_SPLICE	YES	131	0	0.05	1	0.0544	0.0218	WASF2->Oncogene{Bushman},WAS_protein_family_member_2,chr1:27730730-27816669:-,IFI6->chr1:27992572-27998729:-,interferon_alpha_inducible_protein_6	NCIH810_LUNG	0.05	1	0.0762	TRUE	0	8	0	1	5	TRUE	ACH-000789
NCIH810_LUNG	CCDC57--CCNE1	2	12	CCDC57	29723	chr17:80085568:-	CCNE1	44203	chr19:30308044:+	ONLY_REF_SPLICE	YES	36	298	0.28	0.04	0.0218	0.1307	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CCNE1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:30302805-30315215:+,cyclin_E1	NCIH810_LUNG	0.04	0.28	0.1525	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	TRIM55--ADHFE1	4	4	TRIM55	4843	chr8:67049425:+	ADHFE1	24128	chr8:67361100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0.0436	TRIM55->chr8:67039131-67087720:+,tripartite_motif_containing_55,ADHFE1->alcohol_dehydrogenase,_iron_containing_1,chr8:67342420-67383836:+	NCIH810_LUNG	1	1	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	DHRS7B--PKHD1	4	1	DHRS7B	1081	chr17:21026757:+	PKHD1	87546	chr6:51514018:-	ONLY_REF_SPLICE	YES	0	9	1	0.36	0.0436	0.0109	{Klijn_CCL:Lung=1},DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	NCIH810_LUNG	0.36	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	TPX2--HM13	4	0	TPX2	5884	chr20:30354485:+	HM13	26139	chr20:30115287:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	NCIH810_LUNG	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CCDC57--CCNE1	3	3	CCDC57	24489	chr17:80109436:-	CCNE1	42403	chr19:30303439:+	ONLY_REF_SPLICE	YES	69	0	0.08	1	0.0327	0.0327	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CCNE1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:30302805-30315215:+,cyclin_E1	NCIH810_LUNG	0.08	1	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	NRG1--RTF1	3	2	NRG1	2344	chr8:31498245:+	RTF1	38948	chr15:41763370:+	ONLY_REF_SPLICE	YES	0	52	1	0.09	0.0327	0.0218	NRG1->chr8:31496902-32622548:+,neuregulin_1,RTF1->RTF1_homolog,_Paf1/RNA_polymerase_II_complex_component,chr15:41700606-41775761:+	NCIH810_LUNG	0.09	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	TPCN1--DTX1	3	2	TPCN1	7733	chr12:113698297:+	DTX1	35678	chr12:113495254:+	ONLY_REF_SPLICE	YES	20	0	0.2	1	0.0327	0.0218	TPCN1->chr12:113658855-113736390:+,two_pore_segment_channel_1,DTX1->chr12:113494514-113535833:+,deltex_1	NCIH810_LUNG	0.2	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CPSF6--POGZ	3	0	CPSF6	11046	chr12:69656342:+	POGZ	37023	chr1:151380716:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain	NCIH810_LUNG	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	NPM1P4--NCL	3	0	NPM1P4	1488	chr13:28270854:-	NCL	10603	chr2:232325473:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	NCIH810_LUNG	1	1	0.0327	TRUE	0	0	0	3	0	TRUE	ACH-000789
NCIH810_LUNG	NPM1P4--NCL	3	0	NPM1P4	1488	chr13:28270854:-	NCL	10594	chr2:232325482:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	NCIH810_LUNG	1	1	0.0327	TRUE	0	0	0	3	0	TRUE	ACH-000789
NCIH810_LUNG	NPM1P4--NCL	3	0	NPM1P4	1486	chr13:28270856:-	NCL	9637	chr2:232326439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	NCIH810_LUNG	1	1	0.0327	TRUE	0	0	0	3	0	TRUE	ACH-000789
NCIH810_LUNG	SLC16A3--RP3-335N17.2	2	4	SLC16A3	10170	chr17:80195769:+	RP3-335N17.2	19930	chr6:51487158:+	ONLY_REF_SPLICE	YES	129	1	0.04	0.86	0.0218	0.0436	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,RP3-335N17.2->chr6:51464521-51487682:+	NCIH810_LUNG	0.04	0.86	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	VWDE--PHF14	3	0	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH810_LUNG	1	1	0.0327	TRUE	0	6	0	17	2	TRUE	ACH-000789
NCIH810_LUNG	CNOT1--RP11-481J2.2	1	6	CNOT1	16673	chr16:58608513:-	RP11-481J2.2	56935	chr16:58495375:+	ONLY_REF_SPLICE	YES	60	5	0.1	0.58	0.0109	0.0653	LOCAL_INVERSION:-:+:[57481],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,RP11-481J2.2->chr16:58455230-58496374:+	NCIH810_LUNG	0.1	0.58	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	TTC28--ZMAT5	2	2	TTC28	2523	chr22:29025540:-	ZMAT5	45637	chr22:30138469:-	ONLY_REF_SPLICE	YES	2	45	0.67	0.08	0.0218	0.0218	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,ZMAT5->chr22:30126945-30163000:-,zinc_finger_matrin-type_5	NCIH810_LUNG	0.08	0.67	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	AC003991.3--GCA	2	0	AC003991.3	9701	chr7:87901185:+	GCA	21533	chr2:163204088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	AC003991.3->chr7:87848674-87921781:+,GCA->chr2:163175350-163228105:+,grancalcin	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	AEBP2--PLEKHA5	2	0	AEBP2	2869	chr12:19593304:+	PLEKHA5	29672	chr12:19406874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Testis=[count:3=pct:2.9]},GTEx_v2:{count=2;pct=0.02%;dist=Testis=2},LOCAL_REARRANGEMENT:+:[27645],AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	FKBP15--HDHD3	2	0	FKBP15	22912	chr9:115935733:-	HDHD3	36384	chr9:116139205:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	FKBP15->FK506_binding_protein_15,chr9:115923286-115983641:-,HDHD3->chr9:116135699-116139279:-,haloacid_dehalogenase_like_hydrolase_domain_containing_3	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MYO6--BAI3	2	0	MYO6	1232	chr6:76459140:+	BAI3	67743	chr6:70034764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	MYO6->chr6:76458909-76629254:+,myosin_VI,BAI3->chr6:69345259-70099403:+	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	PER2--AC012485.2	2	0	PER2	18646	chr2:239164298:-	AC012485.2	30719	chr2:239208829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	LOCAL_REARRANGEMENT:-:[8608],PER2->chr2:239152679-239198743:-,period_circadian_clock_2,AC012485.2->chr2:239207351-239209261:-	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	SLC16A3--RP3-335N17.2	1	4	SLC16A3	10170	chr17:80195769:+	RP3-335N17.2	18324	chr6:51470062:+	ONLY_REF_SPLICE	YES	129	0	0.04	1	0.0109	0.0436	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,RP3-335N17.2->chr6:51464521-51487682:+	NCIH810_LUNG	0.04	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	TPX2--HM13	2	0	TPX2	2458	chr20:30330450:+	HM13	27706	chr20:30125982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	2	0	TRUE	ACH-000789
NCIH810_LUNG	VEZT--UBE2N	2	0	VEZT	1141	chr12:95611662:+	UBE2N	34097	chr12:93805075:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	VEZT->chr12:95611522-95696566:+,vezatin,_adherens_junctions_transmembrane_protein,UBE2N->chr12:93799449-93836038:-,ubiquitin_conjugating_enzyme_E2_N	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	YARS--CSMD2	2	0	YARS	1966	chr1:33282789:-	CSMD2	26985	chr1:34312597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase,CSMD2->CUB_and_Sushi_multiple_domains_2,chr1:33979609-34631443:-	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	FBXL5--RP11-484O2.1	1	1	FBXL5	16339	chr4:15613889:-	RP11-484O2.1	22958	chr4:15364147:-	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0109	0.0109	FBXL5->F-box_and_leucine-rich_repeat_protein_5,chr4:15606162-15683302:-,RP11-484O2.1->chr4:15359765-15421656:-	NCIH810_LUNG	0.11	1	0.0218	TRUE	1	6	0	5	2	TRUE	ACH-000789
NCIH810_LUNG	XRN1--ATR	1	1	XRN1	4470	chr3:142151503:-	ATR	56247	chr3:142279296:-	ONLY_REF_SPLICE	YES	8	15	0.2	0.12	0.0109	0.0109	LOCAL_REARRANGEMENT:-:[1173],XRN1->5'-3'_exoribonuclease_1,chr3:142025449-142166904:-,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	NCIH810_LUNG	0.12	0.2	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
LN428_CENTRAL_NERVOUS_SYSTEM	CTD-2544L4.1--TBC1D7	45	5	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5189	chr6:13328738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4929	0.0548	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.5477	TRUE	0	0	0	5	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	CTD-2544L4.1--TBC1D7	43	5	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5177	chr6:13328750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.471	0.0548	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.5258	TRUE	0	0	0	5	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	CTD-2544L4.1--TBC1D7	37	5	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5183	chr6:13328744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4053	0.0548	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.4601	TRUE	0	0	0	5	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RSBN1L--PTPN12	33	5	RSBN1L	10808	chr7:77407763:+	PTPN12	36506	chr7:77256022:+	ONLY_REF_SPLICE	YES	55	75	0.41	0.34	0.3615	0.0548	LOCAL_REARRANGEMENT:+:[56372],RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like,PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12	LN428_CENTRAL_NERVOUS_SYSTEM	0.34	0.41	0.4163	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTAP--RP11-399D6.2	28	12	MTAP	12211	chr9:21859424:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3067	0.1314	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.4381	TRUE	0	0	0	2	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTAP--RP11-399D6.2	27	8	MTAP	9899	chr9:21854869:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	12	0	0.74	1	0.2958	0.0876	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	LN428_CENTRAL_NERVOUS_SYSTEM	0.74	1	0.3834	TRUE	0	0	0	4	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	USP20--HMCN2	24	0	USP20	1802	chr9:132597778:+	HMCN2	25386	chr9:133046882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2629	0	USP20->chr9:132596977-132644107:+,ubiquitin_specific_peptidase_20,HMCN2->chr9:133046882-133309510:+,hemicentin_2	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.2629	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	8	14	RP5-857K21.7	1231	chr1:568367:+	MTND2P28	4713	chr1:565050:+	INCL_NON_REF_SPLICE	YES	300	0	0.07	1	0.0876	0.1534	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.241	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	DIS3L2--SPP2	11	0	DIS3L2	18560	chr2:233114056:+	SPP2	43895	chr2:234975177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1205	0	DIS3L2->DIS3_like_3'-5'_exoribonuclease_2,chr2:232825955-233209060:+,SPP2->chr2:234959323-234985778:+,secreted_phosphoprotein_2	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.1205	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	5	14	RP5-857K21.7	1234	chr1:568370:+	MTND2P28	4717	chr1:565054:+	INCL_NON_REF_SPLICE	YES	301	0	0.06	1	0.0548	0.1534	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.2082	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTAP--RP11-399D6.2	3	15	MTAP	12211	chr9:21859424:+	RP11-399D6.2	23187	chr9:22646222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0.1643	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.1972	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	5	0	RP5-857K21.7	1374	chr1:568510:+	MTND2P28	5601	chr1:565938:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0548	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	5	0	RP5-857K21.7	1240	chr1:568376:+	MTND2P28	5550	chr1:565887:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0548	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	4	1	RP5-857K21.7	1359	chr1:568495:+	MTND2P28	5582	chr1:565919:+	INCL_NON_REF_SPLICE	YES	109	23	0.04	0.18	0.0438	0.011	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.04	0.18	0.0548	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	AHCYL2--DCC	4	0	AHCYL2	1417	chr7:128865280:+	DCC	40737	chr18:50432414:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0438	0	AHCYL2->adenosylhomocysteinase_like_2,chr7:128864864-129070052:+,DCC->DCC_netrin_1_receptor,Oncogene{Bushman},chr18:49866542-51057784:+	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	4	0	RP5-857K21.7	1222	chr1:568358:+	MTND2P28	5582	chr1:565919:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0438	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	4	0	RP5-857K21.7	1276	chr1:568412:+	MTND2P28	5539	chr1:565876:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0438	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	SPARC--FTL	3	0	SPARC	11851	chr5:151045958:-	FTL	19036	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx&tcga_normals:4/3694=0.11%,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0329	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	ATXN7--DOCK3	2	0	ATXN7	15446	chr3:63976535:+	DOCK3	28913	chr3:50879106:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	ATXN7->ataxin_7,chr3:63850233-63989138:+,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	BSDC1--RBBP4	2	0	BSDC1	1652	chr1:32859681:-	RBBP4	25601	chr1:33138051:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	BSDC1->BSD_domain_containing_1,chr1:32830704-32860332:-,RBBP4->chr1:33116743-33151812:+,retinoblastoma_binding_protein_4	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	FAM91A1--ERCC4	2	0	FAM91A1	3538	chr8:124787538:+	ERCC4	39395	chr16:14031623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	FAM91A1->chr8:124780696-124827692:+,family_with_sequence_similarity_91_member_A1,ERCC4->Oncogene{Bushman},chr16:14014014-14046202:+,excision_repair_cross-complementation_group_4	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	KMT2E--TIAM2	2	0	KMT2E	1357	chr7:104654982:+	TIAM2	55130	chr6:155465740:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,TIAM2->T-cell_lymphoma_invasion_and_metastasis_2,chr6:155153831-155578857:+	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MRPL39--ZNF766	2	0	MRPL39	2069	chr21:26978761:-	ZNF766	22848	chr19:52793319:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	MRPL39->chr21:26957968-26979829:-,mitochondrial_ribosomal_protein_L39,ZNF766->chr19:52772824-52795977:+,zinc_finger_protein_766	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-473M20.14--LITAF	2	0	RP11-473M20.14	8505	chr16:3174488:-	LITAF	24018	chr16:11650591:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	RP11-473M20.14->chr16:3166043-3184883:-,LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	TRA2B--TBC1D5	2	0	TRA2B	1312	chr3:185655613:-	TBC1D5	58037	chr3:17349626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	1	2	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.011	0.0219	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LN428_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.0329	TRUE	0	0	0	9	0	TRUE	ACH-000455
DM3_FIBROBLAST	ATF6B--EXT2	9	0	ATF6B	4740	chr6:32088598:-	EXT2	35688	chr11:44265893:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1406	0	ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2	DM3_FIBROBLAST	1	1	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	RABAC1--ATP5SL	5	0	RABAC1	2038	chr19:42462505:-	ATP5SL	11598	chr19:41939272:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0781	0	RABAC1->Rab_acceptor_1,chr19:42460833-42463542:-,ATP5SL->ATP5S_like,chr19:41937223-41946622:-	DM3_FIBROBLAST	1	1	0.0781	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	APP--CALR	4	0	APP	11587	chr21:27394262:-	CALR	36022	chr19:13054563:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	GTEx&tcga_normals:3/3694=0.08%,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,CALR->calreticulin,chr19:13049392-13055303:+	DM3_FIBROBLAST	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	CAB39--SPSB1	4	0	CAB39	14130	chr2:231684910:+	SPSB1	21675	chr1:9415991:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	CAB39->calcium_binding_protein_39,chr2:231577560-231685790:+,SPSB1->chr1:9352939-9429591:+,splA/ryanodine_receptor_domain_and_SOCS_box_containing_1	DM3_FIBROBLAST	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	CD63--SEPT8	4	0	CD63	4855	chr12:56119637:-	SEPT8	21053	chr5:132093507:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	CD63->CD63_molecule,chr12:56119107-56123491:-,SEPT8->chr5:132086509-132142933:-,septin_8	DM3_FIBROBLAST	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	HEXB--RPS3	4	0	HEXB	15929	chr5:74016543:+	RPS3	26207	chr11:75115878:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	HEXB->chr5:73935848-74018472:+,hexosaminidase_subunit_beta,RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3	DM3_FIBROBLAST	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	CCND1--DCBLD2	3	0	CCND1	1290	chr11:69456144:+	DCBLD2	12711	chr3:98620047:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	CYBA--DCN	3	0	CYBA	1193	chr16:88717368:-	DCN	23162	chr12:91552210:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	CYBA->chr16:88709691-88717560:-,cytochrome_b-245_alpha_chain,DCN->chr12:91539025-91576900:-,decorin	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	EEF2--AC002985.3	3	0	EEF2	9044	chr19:3977268:-	AC002985.3	16806	chr19:19023826:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,AC002985.3->chr19:19017822-19045206:-	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	FKBP2--ITGB1	3	0	FKBP2	3264	chr11:64010738:+	ITGB1	21815	chr10:33218934:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	FKBP2->FK506_binding_protein_2,chr11:64008475-64011604:+,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	FLNA--RPRD1B	3	0	FLNA	16104	chrX:153582562:-	RPRD1B	35393	chr20:36718144:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	FLNA->chrX:153576892-153603006:-,filamin_A,RPRD1B->chr20:36661948-36720768:+,regulation_of_nuclear_pre-mRNA_domain_containing_1B	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	GNPTG--MAP1B	3	0	GNPTG	1384	chr16:1402307:+	MAP1B	14875	chr5:71479570:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0	GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+,MAP1B->chr5:71403061-71505395:+,microtubule_associated_protein_1B	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	GRHPR--MAP7D1	3	0	GRHPR	2286	chr9:37424959:+	MAP7D1	27952	chr1:36645959:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	GRHPR->chr9:37422663-37436987:+,glyoxylate_reductase/hydroxypyruvate_reductase,MAP7D1->MAP7_domain_containing_1,chr1:36621180-36646450:+	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	MANF--TUBA1B	3	0	MANF	4894	chr3:51426397:+	TUBA1B	11706	chr12:49521800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	MANF->Oncogene{Bushman},chr3:51422478-51426828:+,mesencephalic_astrocyte_derived_neurotrophic_factor,TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	PLD3--CTSB	3	0	PLD3	8650	chr19:40877770:+	CTSB	27357	chr8:11710946:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,CTSB->Oncogene{Bushman},cathepsin_B,chr8:11700033-11726957:-	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	RP11-1035H13.3--HELZ2	3	0	RP11-1035H13.3	6122	chr16:18800301:-	HELZ2	26130	chr20:62189501:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	RP11-1035H13.3->chr16:18799385-18812841:-,HELZ2->chr20:62189439-62205592:-,helicase_with_zinc_finger_2	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	AASS--CPED1	2	0	AASS	1120	chr7:121784215:-	CPED1	40349	chr7:120764385:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	AASS->aminoadipate-semialdehyde_synthase,chr7:121715701-121784334:-,CPED1->cadherin_like_and_PC-esterase_domain_containing_1,chr7:120628731-120937498:+	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	ADD1--CMAS	2	0	ADD1	1168	chr4:2845751:+	CMAS	34377	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	ADD1->adducin_1,chr4:2845584-2931803:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	ATP6V1H--ME1	2	0	ATP6V1H	5524	chr8:54745544:-	ME1	38442	chr6:83926315:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-,ME1->chr6:83920108-84140797:-,malic_enzyme_1	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	CEP57L1--CDC40	2	0	CEP57L1	8203	chr6:109461878:+	CDC40	31487	chr6:110531910:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	CEP57L1->centrosomal_protein_57_like_1,chr6:109416313-109485135:+,CDC40->cell_division_cycle_40,chr6:110501344-110575478:+	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	DROSHA--NNT	2	0	DROSHA	18692	chr5:31483661:-	NNT	66673	chr5:43675613:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	DROSHA->chr5:31400604-31532303:-,drosha_ribonuclease_III,NNT->chr5:43602794-43707507:+,nicotinamide_nucleotide_transhydrogenase	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	FGFR1--TAF12	2	0	FGFR1	16478	chr8:38282027:-	TAF12	34758	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	GPALPP1--SPAG9	2	0	GPALPP1	1191	chr13:45563877:+	SPAG9	52752	chr17:49054582:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	GPALPP1->GPALPP_motifs_containing_1,chr13:45563687-45607746:+,SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	LPIN2--MYL12B	2	0	LPIN2	1229	chr18:3013085:-	MYL12B	32733	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	LPIN2->chr18:2916992-3013313:-,lipin_2,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	1	0	4	0	TRUE	ACH-000742
DM3_FIBROBLAST	RP11-392P7.6--EMP1	2	0	RP11-392P7.6	1078	chr12:13080737:+	EMP1	19999	chr12:13364403:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	RP11-392P7.6->chr12:13080660-13137579:+,EMP1->Oncogene{Bushman},chr12:13349650-13369708:+,epithelial_membrane_protein_1	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	SEC24D--THOC2	2	0	SEC24D	11872	chr4:119718838:-	THOC2	70988	chrX:122753287:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	SEC24D->SEC24_homolog_D,_COPII_coat_complex_component,chr4:119643978-119759838:-,THOC2->THO_complex_2,chrX:122734412-122866906:-	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	TACC1--ATP6V1H	2	0	TACC1	16198	chr8:38684893:+	ATP6V1H	55325	chr8:54628584:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1,ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	ZNF736--PHF14	2	0	ZNF736	6637	chr7:63774531:+	PHF14	45146	chr7:11209043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
HEKTE_KIDNEY	CFL1--FIBP	3	0	CFL1	4089	chr11:65625568:-	FIBP	16353	chr11:65655603:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:-:[21715],CFL1->chr11:65590493-65629497:-,cofilin_1,FIBP->FGF1_intracellular_binding_protein,chr11:65651212-65656010:-	HEKTE_KIDNEY	1	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000049
HEKTE_KIDNEY	B3GALNT2--C6orf118	2	0	B3GALNT2	10579	chr1:235628953:-	C6orf118	23755	chr6:165715785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	B3GALNT2->beta-1,3-N-acetylgalactosaminyltransferase_2,chr1:235613238-235667781:-,C6orf118->chr6:165693153-165723096:-,chromosome_6_open_reading_frame_118	HEKTE_KIDNEY	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000049
HEKTE_KIDNEY	RBM5--MOB1A	2	0	RBM5	5377	chr3:50131308:+	MOB1A	30250	chr2:74399879:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+,MOB1A->MOB_kinase_activator_1A,chr2:74379655-74406025:-	HEKTE_KIDNEY	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000049
HEKTE_KIDNEY	POSTN--TRPC4	1	3	POSTN	18733	chr13:38143437:-	TRPC4	38332	chr13:38211762:-	ONLY_REF_SPLICE	NO	4	85	0.5	0.04	0.0121	0.0364	LOCAL_REARRANGEMENT:-:[37792],POSTN->chr13:38136720-38172981:-,periostin,TRPC4->chr13:38210773-38444562:-,transient_receptor_potential_cation_channel_subfamily_C_member_4	HEKTE_KIDNEY	0.04	0.5	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000049
HEKTE_KIDNEY	SFI1--SEPP1	1	3	SFI1	4292	chr22:31904362:+	SEPP1	47418	chr5:42808468:-	ONLY_REF_SPLICE	NO	47	0	0.08	1	0.0121	0.0364	SFI1->SFI1_centrin_binding_protein,chr22:31884674-32014572:+,SEPP1->chr5:42799982-42887494:-,selenoprotein_P,_plasma,_1	HEKTE_KIDNEY	0.08	1	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000049
HEKTE_KIDNEY	RP5-1119A7.14--RBFOX2	1	1	RP5-1119A7.14	1162	chr22:36850830:-	RBFOX2	7663	chr22:36334945:-	ONLY_REF_SPLICE	NO	0	19	1	0.1	0.0121	0.0121	RP5-1119A7.14->chr22:36841445-36850991:-,RBFOX2->RNA_binding_protein,_fox-1_homolog_2,chr22:36134783-36424473:-	HEKTE_KIDNEY	0.1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000049
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFF1--KMT2A	8	9	AFF1	11101	chr4:88005316:+	KMT2A	51810	chr11:118354898:+	ONLY_REF_SPLICE	YES	37	2	0.31	0.89	0.0814	0.0916	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.89	0.173	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	7	10	KMT2A	16644	chr11:118353210:+	AFF1	63588	chr4:88011136:+	ONLY_REF_SPLICE	YES	2	40	0.89	0.3	0.0712	0.1018	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.89	0.173	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PABPC1--MTND2P28	5	0	PABPC1	8207	chr8:101721756:-	MTND2P28	18371	chr1:565033:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENO1--EEF2	4	0	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0407	TRUE	0	0	0	9	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	2	5	KMT2A	16241	chr11:118352807:+	AFF1	63588	chr4:88011136:+	ONLY_REF_SPLICE	YES	3	40	0.7	0.15	0.0204	0.0509	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.7	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF3--RPLP1	3	0	ILF3	11721	chr19:10793354:+	RPLP1	24497	chr15:69745159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFC2--ESYT2	3	0	RFC2	4007	chr7:73664069:-	ESYT2	34390	chr7:158540971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	RFC2->chr7:73645829-73668774:-,replication_factor_C_subunit_2,ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL14EP--ZFAT	2	0	ARL14EP	1152	chr11:30344749:+	ZFAT	18482	chr8:135649955:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ARL14EP->ADP_ribosylation_factor_like_GTPase_14_effector_protein,chr11:30344598-30359774:+,ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP9B--RCAN1	2	0	ATP9B	5810	chr18:76856649:+	RCAN1	61840	chr21:35896008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ATP9B->ATPase_phospholipid_transporting_9B_(putative),chr18:76829285-77138283:+,RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C9orf64--ATXN2L	2	0	C9orf64	2606	chr9:86570296:-	ATXN2L	22620	chr16:28848072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	C9orf64->chr9:86553226-86571901:-,chromosome_9_open_reading_frame_64,ATXN2L->ataxin_2_like,chr16:28834356-28848558:+	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHFR--KNTC1	2	0	CHFR	2239	chr12:133522207:-	KNTC1	72755	chr12:123078823:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPD--MKL1	2	0	HNRNPD	3442	chr4:83292681:-	MKL1	20653	chr22:40859290:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D,MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTERFD3--UBXN4	2	0	MTERFD3	1198	chr12:107380747:-	UBXN4	16388	chr2:136519388:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MTERFD3->chr12:107371069-107380944:-,UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYLIP--PARP8	2	0	MYLIP	1285	chr6:16129640:+	PARP8	28296	chr5:50084357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MYLIP->chr6:16129356-16148479:+,myosin_regulatory_light_chain_interacting_protein,PARP8->chr5:49961733-50142356:+,poly(ADP-ribose)_polymerase_family_member_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--RHOA	2	0	RCC1	2175	chr1:28834672:+	RHOA	22152	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	1	0	6	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A53--MAPK9	2	0	SLC25A53	1150	chrX:103401559:-	MAPK9	15190	chr5:179707608:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SLC25A53->chrX:103343898-103401708:-,solute_carrier_family_25_member_53,MAPK9->Oncogene{Bushman},chr5:179660143-179719099:-,mitogen-activated_protein_kinase_9	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAPOLA--VRK1	1	1	PAPOLA	2168	chr14:96968937:+	VRK1	34194	chr14:97299804:+	ONLY_REF_SPLICE	YES	110	10	0.02	0.17	0.0102	0.0102	PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.17	0.0204	TRUE	0	3	0	2	2	TRUE	ACH-000045
BC3C_URINARY_TRACT	CNN2--AC004221.2	345	89	CNN2	4331	chr19:1032695:+	AC004221.2	12745	chr19:1239363:+	ONLY_REF_SPLICE	YES	331	1	0.57	1	4.3301	1.1171	CNN2->calponin_2,chr19:1026298-1039068:+,AC004221.2->chr19:1238178-1239521:+	BC3C_URINARY_TRACT	0.57	1	5.4472	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	UQCRC1--SLC26A6	27	7	UQCRC1	2815	chr3:48646595:-	SLC26A6	14391	chr3:48671068:-	ONLY_REF_SPLICE	YES	543	6	0.06	0.85	0.3389	0.0879	LOCAL_REARRANGEMENT:-:[14747],UQCRC1->chr3:48636435-48648409:-,ubiquinol-cytochrome_c_reductase_core_protein_I,SLC26A6->chr3:48663156-48672926:-,solute_carrier_family_26_member_6	BC3C_URINARY_TRACT	0.06	0.85	0.4268	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	CNN2--AC004221.2	9	71	CNN2	4300	chr19:1032664:+	AC004221.2	12745	chr19:1239363:+	INCL_NON_REF_SPLICE	YES	316	1	0.2	0.99	0.113	0.8911	CNN2->calponin_2,chr19:1026298-1039068:+,AC004221.2->chr19:1238178-1239521:+	BC3C_URINARY_TRACT	0.2	0.99	1.0041	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	CNN2--AC004221.2	8	71	CNN2	4298	chr19:1032662:+	AC004221.2	12745	chr19:1239363:+	ONLY_REF_SPLICE	YES	318	1	0.2	0.99	0.1004	0.8911	CNN2->calponin_2,chr19:1026298-1039068:+,AC004221.2->chr19:1238178-1239521:+	BC3C_URINARY_TRACT	0.2	0.99	0.9915	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	ZDHHC14--RP11-80B9.1	6	2	ZDHHC14	2134	chr6:157803298:+	RP11-80B9.1	24405	chr1:240931452:+	ONLY_REF_SPLICE	YES	6	0	0.57	1	0.0753	0.0251	ZDHHC14->Oncogene{Bushman},chr6:157802165-158099178:+,zinc_finger_DHHC-type_containing_14,RP11-80B9.1->chr1:240928857-240931980:+	BC3C_URINARY_TRACT	0.57	1	0.1004	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	SLC7A5--RPL39	5	0	SLC7A5	8058	chr16:87871484:-	RPL39	17596	chrX:118925591:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	BC3C_URINARY_TRACT	1	1	0.0628	TRUE	0	0	0	5	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	ANO10--CPNE4	4	1	ANO10	14991	chr3:43621845:-	CPNE4	34186	chr3:131759165:-	ONLY_REF_SPLICE	YES	20	0	0.2	1	0.0502	0.0126	ANO10->anoctamin_10,chr3:43396351-43733086:-,CPNE4->chr3:131252399-132004254:-,copine_4	BC3C_URINARY_TRACT	0.2	1	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	TXN--PTGR1	3	0	TXN	1229	chr9:113018692:-	PTGR1	14662	chr9:114348445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	TXN->Oncogene{Bushman},chr9:113006091-113018920:-,thioredoxin,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	BC3C_URINARY_TRACT	1	1	0.0377	TRUE	0	0	0	3	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	ADM--RPS24	2	0	ADM	1550	chr11:10326776:+	RPS24	8276	chr10:79795110:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	ADM->adrenomedullin,chr11:10326227-10328944:+,RPS24->chr10:79793518-79816570:+,ribosomal_protein_S24	BC3C_URINARY_TRACT	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	ASB13--GDI2	2	0	ASB13	1087	chr10:5708472:-	GDI2	16977	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:-:[98628],ASB13->ankyrin_repeat_and_SOCS_box_containing_13,chr10:5680830-5708558:-,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	BC3C_URINARY_TRACT	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	CNTNAP3B--SP1	2	0	CNTNAP3B	2589	chr9:43709760:+	SP1	42451	chr12:53775894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	CNTNAP3B->chr9:43684902-43924049:+,contactin_associated_protein-like_3B,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	BC3C_URINARY_TRACT	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	DANCR--SERINC2	2	0	DANCR	1530	chr4:53579126:+	SERINC2	18554	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	BC3C_URINARY_TRACT	1	1	0.0251	TRUE	0	9	0	3	2	TRUE	ACH-000593
BC3C_URINARY_TRACT	PCDH9--FAM192A	2	0	PCDH9	5728	chr13:67799537:-	FAM192A	20892	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	PCDH9->chr13:66876967-67804468:-,protocadherin_9,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	BC3C_URINARY_TRACT	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	XPR1--MPZL1	2	0	XPR1	2319	chr1:180651547:+	MPZL1	28963	chr1:167734820:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,MPZL1->chr1:167690429-167761156:+,myelin_protein_zero_like_1	BC3C_URINARY_TRACT	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	ATR--U2SURP	1	1	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	23	96	0.08	0.02	0.0126	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	BC3C_URINARY_TRACT	0.02	0.08	0.0252	TRUE	0	10	0	10	7	TRUE	ACH-000593
SH10TC_STOMACH	EZH2--ZCCHC8	107	87	EZH2	14183	chr7:148513776:-	ZCCHC8	36741	chr12:122962839:-	ONLY_REF_SPLICE	YES	163	61	0.54	0.76	1.4129	1.1488	EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit,ZCCHC8->chr12:122957417-122985518:-,zinc_finger_CCHC-type_containing_8	SH10TC_STOMACH	0.54	0.76	2.5617	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	CCDC91--ASIC2	95	42	CCDC91	25881	chr12:28637098:+	ASIC2	41851	chr17:31439085:-	ONLY_REF_SPLICE	YES	143	0	0.49	1	1.2544	0.5546	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,ASIC2->acid_sensing_ion_channel_subunit_2,chr17:31340105-32501983:-	SH10TC_STOMACH	0.49	1	1.809	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	SFSWAP--EP400	39	20	SFSWAP	4873	chr12:132199498:+	EP400	65951	chr12:132534868:+	ONLY_REF_SPLICE	YES	68	29	0.46	0.67	0.515	0.2641	SFSWAP->chr12:132195626-132284282:+,splicing_factor,_suppressor_of_white-apricot_homolog,EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+	SH10TC_STOMACH	0.46	0.67	0.7791	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	RP11-179A16.1--RP11-993B23.3	32	10	RP11-179A16.1	5792	chr11:82067554:-	RP11-993B23.3	15843	chr12:28111452:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4225	0.132	RP11-179A16.1->chr11:81590893-82429124:-,RP11-993B23.3->chr12:28111450-28122746:+	SH10TC_STOMACH	1	1	0.5545	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	SUZ12P--TMEM98	21	20	SUZ12P	1513	chr17:29036829:+	TMEM98	22549	chr17:31258493:+	ONLY_REF_SPLICE	YES	26	427	0.61	0.09	0.2773	0.2641	SUZ12P->chr17:29036317-29117926:+,TMEM98->chr17:31254928-31272124:+,transmembrane_protein_98	SH10TC_STOMACH	0.09	0.61	0.5414	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	SUZ12P--TMEM98	20	23	SUZ12P	1513	chr17:29036829:+	TMEM98	22401	chr17:31258345:+	ONLY_REF_SPLICE	YES	26	159	0.62	0.21	0.2641	0.3037	SUZ12P->chr17:29036317-29117926:+,TMEM98->chr17:31254928-31272124:+,transmembrane_protein_98	SH10TC_STOMACH	0.21	0.62	0.5678	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	ACACA--MYO1D	21	9	ACACA	1558	chr17:35766352:-	MYO1D	105498	chr17:30986356:-	ONLY_REF_SPLICE	YES	8	23	0.79	0.57	0.2773	0.1188	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,MYO1D->chr17:30819540-31204195:-,myosin_ID	SH10TC_STOMACH	0.57	0.79	0.3961	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	ORC4--HOOK3	18	5	ORC4	1946	chr2:148778202:-	HOOK3	48124	chr8:42862990:+	ONLY_REF_SPLICE	YES	12	83	0.66	0.22	0.2377	0.066	ORC4->chr2:148687968-148779147:-,origin_recognition_complex_subunit_4,HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3	SH10TC_STOMACH	0.22	0.66	0.3037	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	GOSR2--EYA2	13	18	GOSR2	9200	chr17:45016070:+	EYA2	36387	chr20:45808446:+	ONLY_REF_SPLICE	YES	203	0	0.13	1	0.1717	0.2377	GOSR2->chr17:45000483-45105003:+,golgi_SNAP_receptor_complex_member_2,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	SH10TC_STOMACH	0.13	1	0.4094	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	SUPT6H--TEFM	11	16	SUPT6H	17212	chr17:27015236:+	TEFM	35753	chr17:29227580:-	ONLY_REF_SPLICE	YES	116	57	0.19	0.32	0.1452	0.2113	SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+,TEFM->chr17:29224354-29233838:-,transcription_elongation_factor,_mitochondrial	SH10TC_STOMACH	0.19	0.32	0.3565	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	ASUN--TADA2A	13	5	ASUN	8980	chr12:27075549:-	TADA2A	22757	chr17:35771356:+	ONLY_REF_SPLICE	YES	400	9	0.04	0.67	0.1717	0.066	ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-,TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A	SH10TC_STOMACH	0.04	0.67	0.2377	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	MED24--C17orf104	10	9	MED24	4669	chr17:38209551:-	C17orf104	24514	chr17:42734495:+	ONLY_REF_SPLICE	YES	122	0	0.13	1	0.132	0.1188	MED24->chr17:38175350-38217468:-,mediator_complex_subunit_24,C17orf104->chr17:42733762-42767676:+	SH10TC_STOMACH	0.13	1	0.2508	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	LINC00941--DLG2	10	5	LINC00941	2174	chr12:30949150:+	DLG2	24740	chr11:84245774:-	ONLY_REF_SPLICE	YES	98	0	0.13	1	0.132	0.066	LINC00941->chr12:30947977-30955645:+,long_intergenic_non-protein_coding_RNA_941,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	SH10TC_STOMACH	0.13	1	0.198	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	ORC4--HOOK3	6	11	ORC4	1971	chr2:148778177:-	HOOK3	48124	chr8:42862990:+	ONLY_REF_SPLICE	YES	33	83	0.34	0.17	0.0792	0.1452	ORC4->chr2:148687968-148779147:-,origin_recognition_complex_subunit_4,HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3	SH10TC_STOMACH	0.17	0.34	0.2244	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	SUPT6H--TEFM	3	10	SUPT6H	17212	chr17:27015236:+	TEFM	35794	chr17:29227539:-	ONLY_REF_SPLICE	YES	116	53	0.1	0.2	0.0396	0.132	SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+,TEFM->chr17:29224354-29233838:-,transcription_elongation_factor,_mitochondrial	SH10TC_STOMACH	0.1	0.2	0.1716	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	RP11-179A16.1--RP11-993B23.3	4	3	RP11-179A16.1	3440	chr11:82384134:-	RP11-993B23.3	15843	chr12:28111452:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0.0396	RP11-179A16.1->chr11:81590893-82429124:-,RP11-993B23.3->chr12:28111450-28122746:+	SH10TC_STOMACH	1	1	0.0924	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	DLG2--GBE1	2	2	DLG2	34415	chr11:83497733:-	GBE1	67656	chr3:81720104:-	ONLY_REF_SPLICE	YES	0	51	1	0.07	0.0264	0.0264	DLG2->chr11:83166055-85338966:-,discs_large_homolog_2,GBE1->chr3:81538850-81811312:-,glucan_(1,4-alpha-),_branching_enzyme_1	SH10TC_STOMACH	0.07	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	C17orf76-AS1--PTCD3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	SH10TC_STOMACH	1	1	0.0264	TRUE	0	3	0	8	0	TRUE	ACH-000764
SH10TC_STOMACH	ORC4--HOOK3	1	4	ORC4	1946	chr2:148778202:-	HOOK3	49207	chr8:42865448:+	ONLY_REF_SPLICE	YES	12	66	0.29	0.07	0.0132	0.0528	ORC4->chr2:148687968-148779147:-,origin_recognition_complex_subunit_4,HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3	SH10TC_STOMACH	0.07	0.29	0.066	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	SNHG16--GNAS	2	0	SNHG16	1092	chr17:74553939:+	GNAS	27053	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SH10TC_STOMACH	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000764
PANC1_PANCREAS	MTAP--DMRTA1	20	4	MTAP	7556	chr9:21818201:+	DMRTA1	25056	chr9:22451063:+	ONLY_REF_SPLICE	YES	0	2	1	0.92	0.18	0.036	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	PANC1_PANCREAS	0.92	1	0.216	TRUE	0	1	0	2	0	TRUE	ACH-000164
PANC1_PANCREAS	MOB3A--AP3D1	11	3	MOB3A	5013	chr19:2085174:-	AP3D1	16622	chr19:2138713:-	ONLY_REF_SPLICE	YES	27	35	0.34	0.29	0.099	0.027	LOCAL_REARRANGEMENT:-:[4316],MOB3A->MOB_kinase_activator_3A,chr19:2071037-2096672:-,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	PANC1_PANCREAS	0.29	0.34	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	ANP32B--APP	10	0	ANP32B	8121	chr9:100773592:+	APP	24365	chr21:27394316:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.09	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	PANC1_PANCREAS	1	1	0.09	TRUE	0	0	0	7	0	TRUE	ACH-000164
PANC1_PANCREAS	GAREM--NOL4	9	2	GAREM	2318	chr18:29972858:-	NOL4	32560	chr18:31673561:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.081	0.018	GAREM->chr18:29704840-30050447:-,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	PANC1_PANCREAS	0.79	1	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	RECK--ZNF780B	8	6	RECK	1666	chr9:36037095:+	ZNF780B	38270	chr19:40542533:-	ONLY_REF_SPLICE	YES	44	32	0.24	0.3	0.072	0.054	RECK->chr9:36036430-36124448:+,reversion_inducing_cysteine_rich_protein_with_kazal_motifs,ZNF780B->chr19:40534167-40562116:-,zinc_finger_protein_780B	PANC1_PANCREAS	0.24	0.3	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	EIF1--HSP90AB1	5	0	EIF1	1112	chr17:39845248:+	HSP90AB1	12471	chr6:44219510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.045	0	GTEx&tcga_normals:1/3694=0.03%,EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1	PANC1_PANCREAS	1	1	0.045	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	MTAP--DMRTA1	4	1	MTAP	7556	chr9:21818201:+	DMRTA1	25194	chr9:22451201:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.45	0.036	0.009	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	PANC1_PANCREAS	0.45	1	0.045	TRUE	0	1	0	2	0	TRUE	ACH-000164
PANC1_PANCREAS	ANTXR2--PRKG2	4	0	ANTXR2	19212	chr4:80929675:-	PRKG2	54609	chr4:82013606:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	ANTXR2->anthrax_toxin_receptor_2,chr4:80822303-81046608:-,PRKG2->chr4:82009837-82136218:-,protein_kinase,_cGMP-dependent,_type_II	PANC1_PANCREAS	1	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	DOT1L--CSNK1G2	4	0	DOT1L	1117	chr19:2164264:+	CSNK1G2	44051	chr19:1969507:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+	PANC1_PANCREAS	1	1	0.036	TRUE	1	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	MTAP--RP11-399D6.2	4	0	MTAP	7556	chr9:21818201:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	PANC1_PANCREAS	1	1	0.036	TRUE	0	0	0	2	0	TRUE	ACH-000164
PANC1_PANCREAS	PREP--RP11-553A21.3	3	3	PREP	8016	chr6:105800847:-	RP11-553A21.3	22420	chr6:74405298:-	ONLY_REF_SPLICE	YES	67	1	0.08	0.86	0.027	0.027	PREP->chr6:105725440-105850959:-,prolyl_endopeptidase,RP11-553A21.3->chr6:74403626-74405854:-	PANC1_PANCREAS	0.08	0.86	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	AL589743.1--RP11-536C10.17	3	1	AL589743.1	5091	chr14:19656224:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	137	0	0.03	1	0.027	0.009	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	PANC1_PANCREAS	0.03	1	0.036	TRUE	0	4	0	3	4	TRUE	ACH-000164
PANC1_PANCREAS	AP000525.9--LA16c-60G3.6	3	1	AP000525.9	3590	chr22:16189032:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	72	0	0.05	1	0.027	0.009	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	PANC1_PANCREAS	0.05	1	0.036	TRUE	0	0	0	3	0	TRUE	ACH-000164
PANC1_PANCREAS	AP000525.9--LA16c-60G3.6	3	1	AP000525.9	5082	chr22:16186811:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	62	0	0.06	1	0.027	0.009	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	PANC1_PANCREAS	0.06	1	0.036	TRUE	0	3	0	6	3	TRUE	ACH-000164
PANC1_PANCREAS	ANP32B--APP	3	0	ANP32B	8117	chr9:100773588:+	APP	24340	chr21:27394341:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	PANC1_PANCREAS	1	1	0.027	TRUE	0	0	0	7	0	TRUE	ACH-000164
PANC1_PANCREAS	GLCCI1--JAZF1	3	0	GLCCI1	10957	chr7:8110761:+	JAZF1	33260	chr7:27880486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GLCCI1->chr7:8008425-8133902:+,glucocorticoid_induced_1,JAZF1->JAZF_zinc_finger_1,Oncogene{Bushman},chr7:27870192-28220362:-	PANC1_PANCREAS	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	GPR126--VTA1	3	0	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	PANC1_PANCREAS	1	1	0.027	TRUE	0	2	0	15	1	TRUE	ACH-000164
PANC1_PANCREAS	SETD8--CDK2AP1	3	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	PANC1_PANCREAS	1	1	0.027	TRUE	0	0	0	18	0	TRUE	ACH-000164
PANC1_PANCREAS	SH2B3--GRAMD4	2	1	SH2B3	3089	chr12:111856681:+	GRAMD4	29295	chr22:47068740:+	ONLY_REF_SPLICE	YES	24	15	0.11	0.17	0.018	0.009	SH2B3->SH2B_adaptor_protein_3,chr12:111843752-111889427:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	PANC1_PANCREAS	0.11	0.17	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	APIP--CD44	2	0	APIP	1272	chr11:34937775:-	CD44	36540	chr11:35236399:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	APIP->APAF1_interacting_protein,chr11:34874641-34938046:-,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	ATXN1--TCP1	2	0	ATXN1	3053	chr6:16753464:-	TCP1	40505	chr6:160201119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	ATXN1->ataxin_1,chr6:16299343-16761722:-,TCP1->chr6:160199530-160210781:-,t-complex_1	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	C1orf63--PSMD2	2	0	C1orf63	8720	chr1:25594231:-	PSMD2	29192	chr3:184026237:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,PSMD2->Oncogene{Bushman},chr3:184016497-184026842:+,proteasome_26S_subunit,_non-ATPase_2	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	C7orf50--PRKAR1B	2	0	C7orf50	3078	chr7:1166893:-	PRKAR1B	28024	chr7:647089:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	CNDP2--ZADH2	2	0	CNDP2	1616	chr18:72163666:+	ZADH2	27147	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	CNDP2->CNDP_dipeptidase_2_(metallopeptidase_M20_family),chr18:72163051-72188366:+,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	CYR61--BCL10	2	0	CYR61	2524	chr1:86047967:+	BCL10	10287	chr1:85733665:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61,BCL10->B-cell_CLL/lymphoma_10,Oncogene{Bushman},chr1:85731931-85742773:-	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	GMDS-AS1--SAP130	2	0	GMDS-AS1	2273	chr6:2249160:+	SAP130	47239	chr2:128735663:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	GRAMD4--CUX2	2	0	GRAMD4	18768	chr22:47071449:+	CUX2	33513	chr12:111729222:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+,CUX2->chr12:111471828-111788358:+,cut_like_homeobox_2	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	HNRNPA2B1--TAX1BP1	2	0	HNRNPA2B1	1958	chr7:26240192:-	TAX1BP1	32122	chr7:27855968:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	PWWP2B--INPP5A	2	0	PWWP2B	1184	chr10:134210855:+	INPP5A	21634	chr10:134579277:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GTEx_FI:{Skin=[count:2=pct:0.6]},PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	SH2B3--CUX2	2	0	SH2B3	3089	chr12:111856681:+	CUX2	21789	chr12:111729222:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	LOCAL_REARRANGEMENT:+:[55394],SH2B3->SH2B_adaptor_protein_3,chr12:111843752-111889427:+,CUX2->chr12:111471828-111788358:+,cut_like_homeobox_2	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	SLC16A5--GNL3	2	0	SLC16A5	1318	chr17:73084139:+	GNL3	18158	chr3:52723090:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	SLC16A5->chr17:73083822-73102257:+,solute_carrier_family_16_member_5,GNL3->G_protein_nucleolar_3,chr3:52715172-52728508:+	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	TNS3--CTBP1	2	0	TNS3	1132	chr7:47622025:-	CTBP1	51325	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	TNS3->chr7:47314752-47622156:-,tensin_3,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
IALM_LUNG	IGSF3--GGT1	41	11	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	1	7	0.98	0.88	0.4313	0.1157	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	IALM_LUNG	0.88	0.98	0.547	TRUE	1	1	0	8	1	TRUE	ACH-000672
IALM_LUNG	PFDN1--CTC-329D1.3	38	0	PFDN1	1081	chr5:139682626:-	CTC-329D1.3	12670	chr5:139728125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3997	0	LOCAL_REARRANGEMENT:-:[45363],PFDN1->chr5:139624624-139682706:-,prefoldin_subunit_1,CTC-329D1.3->chr5:139728069-139737379:-	IALM_LUNG	1	1	0.3997	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	ABCC4--DDX11L2	22	13	ABCC4	15862	chr13:95829961:-	DDX11L2	42999	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	32	1	0.52	0.97	0.2314	0.1367	ABCC4->ATP_binding_cassette_subfamily_C_member_4,chr13:95672083-95953687:-,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	IALM_LUNG	0.52	0.97	0.3681	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	PIGU--NCOA6	18	11	PIGU	1151	chr20:33264760:-	NCOA6	44726	chr20:33303169:-	ONLY_REF_SPLICE	YES	84	55	0.26	0.35	0.1893	0.1157	LOCAL_REARRANGEMENT:-:[19812],PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	IALM_LUNG	0.26	0.35	0.305	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	IGSF3--GGT1	3	11	IGSF3	13000	chr1:117131317:-	GGT1	26901	chr22:25003923:+	INCL_NON_REF_SPLICE	YES	1	7	0.93	0.67	0.0316	0.1157	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	IALM_LUNG	0.67	0.93	0.1473	TRUE	1	1	0	8	1	TRUE	ACH-000672
IALM_LUNG	VIM--RPS18	4	0	VIM	2101	chr10:17271358:+	RPS18	12272	chr6:33239854:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},VIM->chr10:17270258-17279592:+,vimentin,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	IALM_LUNG	1	1	0.0421	TRUE	0	0	0	2	0	TRUE	ACH-000672
IALM_LUNG	AC093642.5--RP4-717I23.3	2	3	AC093642.5	2310	chr2:243037178:+	RP4-717I23.3	16904	chr1:93806067:-	ONLY_REF_SPLICE	YES	7	15	0.42	0.25	0.021	0.0316	AC093642.5->chr2:243030784-243102304:+,RP4-717I23.3->chr1:93727743-93811582:-	IALM_LUNG	0.25	0.42	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	C17orf76-AS1--CTD-2354A18.1	2	0	C17orf76-AS1	1593	chr17:16342728:+	CTD-2354A18.1	16095	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	C17orf76-AS1->chr17:16342136-16381992:+,CTD-2354A18.1->chr18:70992176-71017113:+	IALM_LUNG	1	1	0.021	TRUE	0	0	0	3	0	TRUE	ACH-000672
IALM_LUNG	C17orf76-AS1--THOC7	2	0	C17orf76-AS1	1593	chr17:16342728:+	THOC7	16858	chr3:63825449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	C17orf76-AS1->chr17:16342136-16381992:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	IALM_LUNG	1	1	0.021	TRUE	0	1	0	1	0	TRUE	ACH-000672
IALM_LUNG	CTC-786C10.1--SPSB2	2	0	CTC-786C10.1	1532	chr16:85205413:+	SPSB2	10971	chr12:6982150:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	CTC-786C10.1->chr16:85204882-85218969:+,SPSB2->chr12:6980099-6998522:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_2	IALM_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	FNTA--TMEM62	2	0	FNTA	2593	chr8:42911689:+	TMEM62	28455	chr15:43440953:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	FNTA->chr8:42889337-42940931:+,farnesyltransferase,_CAAX_box,_alpha,TMEM62->chr15:43415477-43477344:+,transmembrane_protein_62	IALM_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	PBX3--MAPKAP1	2	0	PBX3	2279	chr9:128510902:+	MAPKAP1	23367	chr9:128434922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	IALM_LUNG	1	1	0.021	TRUE	0	1	0	3	0	TRUE	ACH-000672
IALM_LUNG	PFDN1--HBEGF	2	0	PFDN1	1081	chr5:139682626:-	HBEGF	11704	chr5:139725669:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	LOCAL_REARRANGEMENT:-:[29722],PFDN1->chr5:139624624-139682706:-,prefoldin_subunit_1,HBEGF->chr5:139712428-139726216:-,heparin_binding_EGF_like_growth_factor	IALM_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	POLA1--MTBP	2	0	POLA1	31877	chrX:24839700:+	MTBP	51149	chr8:121471455:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit,MTBP->MDM2_binding_protein,chr8:121457640-121554373:+	IALM_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	SKIV2L2--CTD-3185P2.1	2	0	SKIV2L2	24057	chr5:54696249:+	CTD-3185P2.1	36533	chr15:66783055:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+,CTD-3185P2.1->chr15:66782086-66784447:-	IALM_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000672
SNU8_OVARY	USP54--SYNPO2L	21	0	USP54	1017	chr10:75385695:-	SYNPO2L	42013	chr10:75414038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1847	0	LOCAL_REARRANGEMENT:-:[18928],USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,SYNPO2L->chr10:75404639-75423561:-,synaptopodin_2_like	SNU8_OVARY	1	1	0.1847	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	FAM102A--PTGES2	12	4	FAM102A	1522	chr9:130742271:-	PTGES2	19113	chr9:130887720:-	ONLY_REF_SPLICE	YES	16	72	0.5	0.18	0.1056	0.0352	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,PTGES2->chr9:130882972-130890741:-,prostaglandin_E_synthase_2	SNU8_OVARY	0.18	0.5	0.1408	TRUE	0	2	0	1	1	TRUE	ACH-000460
SNU8_OVARY	SLMAP--SLC19A1	8	3	SLMAP	3400	chr3:57743576:+	SLC19A1	55291	chr21:46922883:-	ONLY_REF_SPLICE	YES	19	2	0.37	0.85	0.0704	0.0264	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,SLC19A1->Oncogene{Bushman},chr21:46913486-46964325:-,solute_carrier_family_19_member_1	SNU8_OVARY	0.37	0.85	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	VPS37B--PITPNM2	7	6	VPS37B	1493	chr12:123380499:-	PITPNM2	20171	chr12:123519232:-	ONLY_REF_SPLICE	YES	135	2	0.09	0.87	0.0616	0.0528	LOCAL_REARRANGEMENT:-:[87036],VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2	SNU8_OVARY	0.09	0.87	0.1144	TRUE	0	1	0	2	1	TRUE	ACH-000460
SNU8_OVARY	LUC7L--CTDNEP1	7	0	LUC7L	8639	chr16:256003:-	CTDNEP1	19037	chr17:7150662:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0616	0	LUC7L->LUC7_like,chr16:238968-279462:-,CTDNEP1->CTD_nuclear_envelope_phosphatase_1,chr17:7146910-7155810:-	SNU8_OVARY	1	1	0.0616	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	ST3GAL1--ADAM18	6	2	ST3GAL1	8438	chr8:134511378:-	ADAM18	48289	chr8:39581267:+	ONLY_REF_SPLICE	YES	63	0	0.11	1	0.0528	0.0176	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,ADAM18->ADAM_metallopeptidase_domain_18,chr8:39442008-39587583:+	SNU8_OVARY	0.11	1	0.0704	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	IRS2--CARS2	3	2	IRS2	5527	chr13:110434389:-	CARS2	20636	chr13:111340365:-	ONLY_REF_SPLICE	YES	21	41	0.19	0.11	0.0264	0.0176	IRS2->ArcherDX_panel,FoundationOne_panel,chr13:110406184-110438915:-,insulin_receptor_substrate_2,CARS2->chr13:111293759-111365950:-,cysteinyl-tRNA_synthetase_2,_mitochondrial_(putative)	SNU8_OVARY	0.11	0.19	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	IRS2--CARS2	3	2	IRS2	5527	chr13:110434389:-	CARS2	21939	chr13:111335481:-	ONLY_REF_SPLICE	YES	21	43	0.19	0.1	0.0264	0.0176	IRS2->ArcherDX_panel,FoundationOne_panel,chr13:110406184-110438915:-,insulin_receptor_substrate_2,CARS2->chr13:111293759-111365950:-,cysteinyl-tRNA_synthetase_2,_mitochondrial_(putative)	SNU8_OVARY	0.1	0.19	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	AC073610.5--ASB1	2	0	AC073610.5	1009	chr12:49333438:-	ASB1	10538	chr2:239352983:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	AC073610.5->chr12:49315767-49333446:-,ASB1->ankyrin_repeat_and_SOCS_box_containing_1,chr2:239335383-239360891:+	SNU8_OVARY	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	ATXN10--FBLN1	2	0	ATXN10	12366	chr22:46136418:+	FBLN1	53199	chr22:45996187:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	GTEx&tcga_normals:8/3694=0.22%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:+:[70663],ATXN10->ataxin_10,chr22:46067678-46241187:+,FBLN1->Oncogene{Bushman},chr22:45898118-45997015:+,fibulin_1	SNU8_OVARY	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	POGZ--FUBP3	2	0	POGZ	6239	chr1:151413404:-	FUBP3	37801	chr9:133495741:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	SNU8_OVARY	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	RNF213--IFT57	2	0	RNF213	26377	chr17:78306431:+	IFT57	87173	chr3:107910490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,IFT57->chr3:107879659-107941417:-,intraflagellar_transport_57	SNU8_OVARY	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	GRHL2--NACAP1	1	1	GRHL2	1358	chr8:102505017:+	NACAP1	25847	chr8:102379851:+	ONLY_REF_SPLICE	YES	20	0	0.09	1	0.0088	0.0088	GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2,NACAP1->chr8:102374022-102384935:+,nascent_polypeptide_associated_complex_alpha_subunit_pseudogene_1	SNU8_OVARY	0.09	1	0.0176	TRUE	0	2	0	1	2	TRUE	ACH-000460
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASH1L--PFN1	178	106	ASH1L	1655	chr1:155531944:-	PFN1	42628	chr17:4849292:-	ONLY_REF_SPLICE	YES	14	1631	0.95	0.15	2.2201	1.3221	ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,PFN1->Oncogene{Bushman},chr17:4848947-4852356:-,profilin_1	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.95	3.5422	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD13A--CCDC63	26	7	ANKRD13A	1599	chr12:110437589:+	CCDC63	27587	chr12:111296390:+	ONLY_REF_SPLICE	YES	7	0	0.82	1	0.3243	0.0873	ANKRD13A->ankyrin_repeat_domain_13A,chr12:110436991-110477568:+,CCDC63->chr12:111284573-111345339:+,coiled-coil_domain_containing_63	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.4116	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAAF1--PLXNA1	25	5	PAAF1	6064	chr11:73598502:+	PLXNA1	44039	chr3:126751230:+	ONLY_REF_SPLICE	YES	67	104	0.31	0.22	0.3118	0.0624	PAAF1->chr11:73587744-73638790:+,proteasomal_ATPase_associated_factor_1,PLXNA1->chr3:126707437-126756235:+,plexin_A1	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.31	0.3742	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERCC1--IGL@	11	0	ERCC1	5740	chr19:45927378:-	IGL@	82199	chr22:23243161:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1372	0	ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,IGL@->Oncogene{Bushman}	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1372	TRUE	0	1	0	1	1	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERCC1--IGL@	10	0	ERCC1	5740	chr19:45927378:-	IGL@	84837	chr22:23248517:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1247	0	ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,IGL@->Oncogene{Bushman}	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1247	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-114H21.2--CTB-1I21.1	5	8	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0624	0.0998	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.1622	TRUE	0	2	0	12	2	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAPDH--IGL@	4	8	GAPDH	5321	chr12:6647437:+	IGL@	58558	chr22:23154303:+	INCL_NON_REF_SPLICE	YES	75	180	0.14	0.06	0.0499	0.0998	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,IGL@->Oncogene{Bushman}	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.14	0.1497	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1GDS1--RP11-696N14.1	5	3	RAP1GDS1	2297	chr4:99214666:+	RP11-696N14.1	36380	chr4:100125514:+	ONLY_REF_SPLICE	YES	92	0	0.08	1	0.0624	0.0374	RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,RP11-696N14.1->chr4:100010008-100222513:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0998	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1GDS1--RP11-696N14.1	3	5	RAP1GDS1	2297	chr4:99214666:+	RP11-696N14.1	32959	chr4:100078648:+	INCL_NON_REF_SPLICE	YES	92	3	0.08	0.73	0.0374	0.0624	RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,RP11-696N14.1->chr4:100010008-100222513:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.73	0.0998	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASH1L--PFN1	4	0	ASH1L	1029	chr1:155532570:-	PFN1	42628	chr17:4849292:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0499	0	ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,PFN1->Oncogene{Bushman},chr17:4848947-4852356:-,profilin_1	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASH1L--SLC25A11	2	4	ASH1L	1655	chr1:155531944:-	SLC25A11	40603	chr17:4842507:-	ONLY_REF_SPLICE	YES	14	120	0.3	0.05	0.0249	0.0499	ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,SLC25A11->chr17:4840425-4843546:-,solute_carrier_family_25_member_11	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.3	0.0748	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAPDH--IGL@	3	0	GAPDH	4191	chr12:6646307:+	IGL@	58544	chr22:23154289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,IGL@->Oncogene{Bushman}	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1GDS1--RP11-696N14.1	1	7	RAP1GDS1	2297	chr4:99214666:+	RP11-696N14.1	30013	chr4:100075702:+	ONLY_REF_SPLICE	YES	92	5	0.08	0.62	0.0125	0.0873	RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,RP11-696N14.1->chr4:100010008-100222513:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.62	0.0998	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD13A--CCDC63	2	1	ANKRD13A	1134	chr12:110437124:+	CCDC63	27587	chr12:111296390:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0249	0.0125	ANKRD13A->ankyrin_repeat_domain_13A,chr12:110436991-110477568:+,CCDC63->chr12:111284573-111345339:+,coiled-coil_domain_containing_63	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUDCD1--RP11-1084E5.1	2	1	NUDCD1	13056	chr8:110257551:-	RP11-1084E5.1	20569	chr8:110056356:-	ONLY_REF_SPLICE	YES	69	0	0.04	1	0.0249	0.0125	NUDCD1->NudC_domain_containing_1,chr8:110253148-110346614:-,RP11-1084E5.1->chr8:109907258-110075646:-	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0374	TRUE	0	1	0	1	1	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--ANAPC16	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANAPC16	16237	chr10:73990124:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	C17orf76-AS1->chr17:16342136-16381992:+,ANAPC16->anaphase_promoting_complex_subunit_16,chr10:73975787-73995618:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00624--FMO5	2	0	LINC00624	3701	chr1:146986158:-	FMO5	8747	chr1:146696658:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	LINC00624->chr1:146986158-146989699:-,long_intergenic_non-protein_coding_RNA_624,FMO5->chr1:146646930-146714700:-,flavin_containing_monooxygenase_5	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	3	1	2	3	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM47--SEC11C	2	0	RBM47	9994	chr4:40468594:-	SEC11C	26306	chr18:56816745:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,SEC11C->SEC11_homolog_C,_signal_peptidase_complex_subunit,chr18:56806709-56826068:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL32--C3orf83	2	0	RPL32	3240	chr3:12880848:-	C3orf83	13258	chr3:12584728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	RPL32->chr3:12875984-12883087:-,ribosomal_protein_L32,C3orf83->chr3:12556433-12602558:-	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000598
PC9_LUNG	ZSCAN22--CHMP2A	969	64	ZSCAN22	1096	chr19:58838480:+	CHMP2A	11518	chr19:59065603:-	ONLY_REF_SPLICE	YES	0	241	1	0.81	9.7656	0.645	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC9_LUNG	0.81	1	10.4106	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	FUT8--GALNT16	281	130	FUT8	12030	chr14:66028484:+	GALNT16	42140	chr14:69808398:+	ONLY_REF_SPLICE	YES	255	0	0.62	1	2.8319	1.3101	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16	PC9_LUNG	0.62	1	4.142	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	ZSCAN22--CHMP2A	271	33	ZSCAN22	1091	chr19:58838475:+	CHMP2A	11518	chr19:59065603:-	INCL_NON_REF_SPLICE	YES	6	241	0.98	0.56	2.7311	0.3326	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC9_LUNG	0.56	0.98	3.0637	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	ATN1--TPI1	165	91	ATN1	9629	chr12:7050186:+	TPI1	16858	chr12:6979213:+	ONLY_REF_SPLICE	YES	201	4224	0.56	0.06	1.6629	0.9171	LOCAL_REARRANGEMENT:+:[53514],ATN1->atrophin_1,chr12:7033626-7051484:+,TPI1->chr12:6976283-6980112:+,triosephosphate_isomerase_1	PC9_LUNG	0.06	0.56	2.58	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	EFHD1--UBR3	126	43	EFHD1	7630	chr2:233537153:+	UBR3	52132	chr2:170917589:+	ONLY_REF_SPLICE	YES	46	40	0.79	0.81	1.2698	0.4334	EFHD1->EF-hand_domain_family_member_D1,chr2:233470767-233547491:+,UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative)	PC9_LUNG	0.79	0.81	1.7032	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	CPSF3--ASAP2	53	30	CPSF3	8834	chr2:9576490:+	ASAP2	48165	chr2:9533611:+	ONLY_REF_SPLICE	YES	265	44	0.24	0.65	0.5341	0.3023	LOCAL_REARRANGEMENT:+:[17885],CPSF3->chr2:9563697-9613230:+,cleavage_and_polyadenylation_specific_factor_3,ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+	PC9_LUNG	0.24	0.65	0.8364	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	ZSCAN22--CHMP2A	42	64	ZSCAN22	1096	chr19:58838480:+	CHMP2A	10677	chr19:59066444:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4233	0.645	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC9_LUNG	1	1	1.0683	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	ZNF623--GSDMD	38	22	ZNF623	1133	chr8:144718315:+	GSDMD	15594	chr8:144642773:+	ONLY_REF_SPLICE	YES	27	216	0.69	0.22	0.383	0.2217	LOCAL_REARRANGEMENT:+:[72951],ZNF623->chr8:144718183-144735900:+,zinc_finger_protein_623,GSDMD->chr8:144635377-144645232:+,gasdermin_D	PC9_LUNG	0.22	0.69	0.6047	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	SYMPK--NOVA2	31	16	SYMPK	16165	chr19:46333312:-	NOVA2	39867	chr19:46444203:-	ONLY_REF_SPLICE	YES	143	0	0.25	1	0.3124	0.1612	LOCAL_REARRANGEMENT:-:[70444],SYMPK->chr19:46318668-46366548:-,symplekin,NOVA2->NOVA_alternative_splicing_regulator_2,chr19:46436992-46476804:-	PC9_LUNG	0.25	1	0.4736	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	PEX1--FAM133B	28	11	PEX1	1225	chr7:92157621:-	FAM133B	33172	chr7:92207707:-	ONLY_REF_SPLICE	YES	26	117	0.6	0.25	0.2822	0.1109	LOCAL_REARRANGEMENT:-:[32262],PEX1->chr7:92116334-92157845:-,peroxisomal_biogenesis_factor_1,FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B	PC9_LUNG	0.25	0.6	0.3931	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	TBC1D22A--GRAMD4	22	7	TBC1D22A	1228	chr22:47158745:+	GRAMD4	31919	chr22:47054084:+	ONLY_REF_SPLICE	YES	131	60	0.18	0.33	0.2217	0.0705	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	PC9_LUNG	0.18	0.33	0.2922	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	FUT8--GALNT16	2	85	FUT8	12030	chr14:66028484:+	GALNT16	43224	chr14:69813757:+	ONLY_REF_SPLICE	YES	255	2	0.25	0.98	0.0202	0.8566	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16	PC9_LUNG	0.25	0.98	0.8768	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	ZSCAN22--CHMP2A	7	64	ZSCAN22	1096	chr19:58838480:+	CHMP2A	10762	chr19:59066359:-	INCL_NON_REF_SPLICE	YES	0	31	1	0.7	0.0705	0.645	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC9_LUNG	0.7	1	0.7155	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	ZDHHC5--CLP1	19	11	ZDHHC5	7247	chr11:57456137:+	CLP1	22601	chr11:57426927:+	ONLY_REF_SPLICE	YES	200	18	0.13	0.62	0.1915	0.1109	LOCAL_REARRANGEMENT:+:[5879],ZDHHC5->chr11:57435219-57468659:+,zinc_finger_DHHC-type_containing_5,CLP1->Oncogene{Bushman},chr11:57416465-57429340:+,cleavage_and_polyadenylation_factor_I_subunit_1	PC9_LUNG	0.13	0.62	0.3024	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	ZSCAN22--CHMP2A	6	62	ZSCAN22	1096	chr19:58838480:+	CHMP2A	11527	chr19:59065594:-	INCL_NON_REF_SPLICE	YES	0	235	1	0.22	0.0605	0.6248	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC9_LUNG	0.22	1	0.6853	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	ZSCAN22--CHMP2A	12	33	ZSCAN22	1091	chr19:58838475:+	CHMP2A	10677	chr19:59066444:-	INCL_NON_REF_SPLICE	YES	6	0	0.88	1	0.1209	0.3326	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC9_LUNG	0.88	1	0.4535	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	UBASH3B--MEP1B	17	5	UBASH3B	17454	chr11:122672040:+	MEP1B	42010	chr18:29796954:+	ONLY_REF_SPLICE	YES	280	0	0.07	1	0.1713	0.0504	UBASH3B->chr11:122526383-122685181:+,ubiquitin_associated_and_SH3_domain_containing_B,MEP1B->chr18:29765032-29800367:+,meprin_A_subunit_beta	PC9_LUNG	0.07	1	0.2217	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	SEPT11--CCNG2	12	7	SEPT11	1228	chr4:77871083:+	CCNG2	30949	chr4:78079686:+	ONLY_REF_SPLICE	YES	43	85	0.31	0.18	0.1209	0.0705	SEPT11->chr4:77870856-77961537:+,septin_11,CCNG2->chr4:78078304-78354542:+,cyclin_G2	PC9_LUNG	0.18	0.31	0.1914	TRUE	0	1	0	4	1	TRUE	ACH-000779
PC9_LUNG	ZNF623--GSDMD	2	24	ZNF623	1403	chr8:144718585:+	GSDMD	15594	chr8:144642773:+	ONLY_REF_SPLICE	YES	54	216	0.33	0.11	0.0202	0.2419	LOCAL_REARRANGEMENT:+:[72951],ZNF623->chr8:144718183-144735900:+,zinc_finger_protein_623,GSDMD->chr8:144635377-144645232:+,gasdermin_D	PC9_LUNG	0.11	0.33	0.2621	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	RP11-114H21.2--CTB-1I21.1	1	25	RP11-114H21.2	2303	chr5:135840382:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.0101	0.252	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	PC9_LUNG	0.81	1	0.2621	TRUE	0	0	0	4	0	TRUE	ACH-000779
PC9_LUNG	RP11-114H21.2--CTB-1I21.1	1	24	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	7	0	0.78	1	0.0101	0.2419	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	PC9_LUNG	0.78	1	0.252	TRUE	0	2	0	12	2	TRUE	ACH-000779
PC9_LUNG	EFHD1--UBR3	2	12	EFHD1	7630	chr2:233537153:+	UBR3	53521	chr2:170929938:+	ONLY_REF_SPLICE	YES	46	81	0.23	0.15	0.0202	0.1209	EFHD1->EF-hand_domain_family_member_D1,chr2:233470767-233547491:+,UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative)	PC9_LUNG	0.15	0.23	0.1411	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	RP11-307P5.1--SASH1	4	4	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	9	8	0.47	0.5	0.0403	0.0403	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	PC9_LUNG	0.47	0.5	0.0806	TRUE	0	0	0	16	0	TRUE	ACH-000779
PC9_LUNG	RCC1--ANXA2	4	0	RCC1	2175	chr1:28834672:+	ANXA2	35637	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0403	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ANXA2->annexin_A2,chr15:60639333-60695082:-	PC9_LUNG	1	1	0.0403	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	RCC1--RPS6KC1	4	0	RCC1	2175	chr1:28834672:+	RPS6KC1	33457	chr1:213415912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0403	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1	PC9_LUNG	1	1	0.0403	TRUE	0	1	0	1	0	TRUE	ACH-000779
PC9_LUNG	STS--RP11-692P14.1	3	3	STS	2372	chrX:7171377:+	RP11-692P14.1	19696	chrX:7986097:+	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0302	0.0302	STS->chrX:7137497-7272851:+,steroid_sulfatase_(microsomal),_isozyme_S,RP11-692P14.1->chrX:7975419-7986201:+	PC9_LUNG	0.43	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	TXNRD1--CHST11	1	10	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	NO	3238	289	0	0.04	0.0101	0.1008	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	PC9_LUNG	0	0.04	0.1109	TRUE	0	2	1	13	2	TRUE	ACH-000779
PC9_LUNG	DANCR--ITGB3BP	3	0	DANCR	1530	chr4:53579126:+	ITGB3BP	18619	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	PC9_LUNG	1	1	0.0302	TRUE	0	0	0	9	0	TRUE	ACH-000779
PC9_LUNG	PCNP--RARRES1	3	0	PCNP	1185	chr3:101293123:+	RARRES1	16261	chr3:158422716:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	PCNP->PEST_proteolytic_signal_containing_nuclear_protein,chr3:101292939-101313281:+,RARRES1->Oncogene{Bushman},chr3:158414681-158450485:-,retinoic_acid_receptor_responder_1	PC9_LUNG	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	CRYBG3--EPHA6	2	1	CRYBG3	18288	chr3:97614929:+	EPHA6	67009	chr3:97439105:+	ONLY_REF_SPLICE	YES	33	0	0.08	1	0.0202	0.0101	LOCAL_INVERSION:+,chr3:+:[69580],CRYBG3->chr3:97540884-97594132:+,chr3:97595819-97663810:+,crystallin_beta-gamma_domain_containing_3,EPHA6->EPH_receptor_A6,chr3:96533425-97471304:+	PC9_LUNG	0.08	1	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	AC079610.2--SPAG16	2	0	AC079610.2	1173	chr2:214148757:-	SPAG16	15817	chr2:214204887:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_INVERSION:-:+:[184],AC079610.2->chr2:214141276-214148929:-,SPAG16->chr2:214149113-215275225:+,sperm_associated_antigen_16	PC9_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	C17orf76-AS1--ITGB3BP	2	0	C17orf76-AS1	1593	chr17:16342728:+	ITGB3BP	24528	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	C17orf76-AS1->chr17:16342136-16381992:+,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	PC9_LUNG	1	1	0.0202	TRUE	0	0	0	4	0	TRUE	ACH-000779
PC9_LUNG	ELOVL1--LSR	2	0	ELOVL1	3840	chr1:43830857:-	LSR	10615	chr19:35741218:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	ELOVL1->ELOVL_fatty_acid_elongase_1,chr1:43829068-43833696:-,LSR->chr19:35739233-35758867:+,lipolysis_stimulated_lipoprotein_receptor	PC9_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	GPALPP1--NUFIP1	2	0	GPALPP1	1191	chr13:45563877:+	NUFIP1	24230	chr13:45540071:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_INVERSION:+:-:[69],GPALPP1->GPALPP_motifs_containing_1,chr13:45563687-45607746:+,NUFIP1->chr13:45513384-45563618:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_1	PC9_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	RCC1--RHOA	2	0	RCC1	2175	chr1:28834672:+	RHOA	22152	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	PC9_LUNG	1	1	0.0202	TRUE	0	1	0	6	0	TRUE	ACH-000779
PC9_LUNG	RP11-761E20.1--AMOT	2	0	RP11-761E20.1	1129	chrX:115085294:-	AMOT	9444	chrX:112075598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RP11-761E20.1->chrX:115033604-115085422:-,AMOT->Oncogene{Bushman},angiomotin,chrX:112017731-112084043:-	PC9_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	PLEKHA7--RP11-90K6.1	1	2	PLEKHA7	1455	chr11:17035536:-	RP11-90K6.1	37669	chr3:112045369:+	ONLY_REF_SPLICE	YES	24	2	0.11	0.6	0.0101	0.0202	PLEKHA7->chr11:16799842-17035990:-,pleckstrin_homology_domain_containing_A7,RP11-90K6.1->chr3:112021325-112051638:+	PC9_LUNG	0.11	0.6	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	CRYBG3--EPHA6	1	1	CRYBG3	19431	chr3:97617869:+	EPHA6	67009	chr3:97439105:+	ONLY_REF_SPLICE	YES	31	0	0.06	1	0.0101	0.0101	LOCAL_INVERSION:+,chr3:+:[69580],CRYBG3->chr3:97540884-97594132:+,chr3:97595819-97663810:+,crystallin_beta-gamma_domain_containing_3,EPHA6->EPH_receptor_A6,chr3:96533425-97471304:+	PC9_LUNG	0.06	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000779
SNU407_LARGE_INTESTINE	RCC1--RP11-74E22.6	12	0	RCC1	2175	chr1:28834672:+	RP11-74E22.6	18879	chr17:2591768:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1353	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RP11-74E22.6->chr17:2591767-2592254:+	SNU407_LARGE_INTESTINE	1	1	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	SLC7A5--ATP5G2	5	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0564	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	SNU407_LARGE_INTESTINE	1	1	0.0564	TRUE	0	0	0	7	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	CTNNA1--MATR3	3	3	CTNNA1	27885	chr5:138240130:+	MATR3	42739	chr5:138611810:+	ONLY_REF_SPLICE	YES	91	9	0.06	0.4	0.0338	0.0338	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	SNU407_LARGE_INTESTINE	0.06	0.4	0.0676	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	CHTOP--ILF2	2	0	CHTOP	1295	chr1:153606819:+	ILF2	17998	chr1:153636950:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_INVERSION:+:-:[15730],CHTOP->chr1:153606525-153618782:+,chromatin_target_of_PRMT1,ILF2->chr1:153634512-153643524:-,interleukin_enhancer_binding_factor_2	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	CTNNB1--CCDC77	2	0	CTNNB1	16512	chr3:41280845:+	CCDC77	27049	chr12:514677:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	DYM--SMAD2	2	0	DYM	3143	chr18:46956625:-	SMAD2	44201	chr18:45423180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin,SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	GBA--EFNA1	2	0	GBA	2795	chr1:155210877:-	EFNA1	15492	chr1:155103815:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_INVERSION:-:+:[96910],GBA->chr1:155204243-155214490:-,glucosylceramidase_beta,EFNA1->chr1:155099936-155107333:+,ephrin_A1	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	NPNT--PPA2	2	0	NPNT	3050	chr4:106819158:+	PPA2	38003	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Thyroid=5,Artery_-_Tibial=2,Artery_-_Aorta=2,Lung=1},NPNT->chr4:106815932-106925184:+,nephronectin,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	1	5	1	3	1	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	NRF1--UBE2H	2	0	NRF1	1111	chr7:129251665:+	UBE2H	25675	chr7:129520811:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[73650],NRF1->Oncogene{Bushman},chr7:129251555-129396922:+,nuclear_respiratory_factor_1,UBE2H->chr7:129470572-129592789:-,ubiquitin_conjugating_enzyme_E2_H	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	TADA1--RP11-568K15.1	2	0	TADA1	1168	chr1:166845397:-	RP11-568K15.1	12371	chr1:178006936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TADA1->chr1:166825747-166845564:-,transcriptional_adaptor_1,RP11-568K15.1->chr1:177975271-178007085:-	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	WBP2NL--RANGAP1	2	0	WBP2NL	1156	chr22:42394884:+	RANGAP1	25624	chr22:41664160:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	WBP2NL->WBP2_N-terminal_like,chr22:42394729-42454460:+,RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	CTNNA1--MATR3	1	3	CTNNA1	27885	chr5:138240130:+	MATR3	43769	chr5:138614016:+	ONLY_REF_SPLICE	YES	91	23	0.04	0.15	0.0113	0.0338	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	SNU407_LARGE_INTESTINE	0.04	0.15	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000955
NCIH1563_LUNG	AP3B1--LHFPL2	58	21	AP3B1	3467	chr5:77536686:-	LHFPL2	52140	chr5:77806221:-	ONLY_REF_SPLICE	YES	131	73	0.38	0.52	0.4867	0.1762	AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-,LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2	NCIH1563_LUNG	0.38	0.52	0.6629	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	NUDT4--PIK3R1	37	8	NUDT4	1539	chr12:93772197:+	PIK3R1	19726	chr5:67569218:+	ONLY_REF_SPLICE	YES	28	3	0.62	0.94	0.3105	0.0671	NUDT4->chr12:93771659-93797024:+,nudix_hydrolase_4,PIK3R1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:67511548-67597649:+,phosphoinositide-3-kinase_regulatory_subunit_1	NCIH1563_LUNG	0.62	0.94	0.3776	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	PITPNM2--ARHGAP32	31	13	PITPNM2	7375	chr12:123519060:-	ARHGAP32	37110	chr11:128994789:-	ONLY_REF_SPLICE	YES	12	5	0.79	0.9	0.2602	0.1091	PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2,ARHGAP32->Rho_GTPase_activating_protein_32,chr11:128834955-129149219:-	NCIH1563_LUNG	0.79	0.9	0.3693	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	RAB3GAP1--MGAT5	22	10	RAB3GAP1	7756	chr2:135851263:+	MGAT5	40569	chr2:135093788:+	ONLY_REF_SPLICE	YES	71	28	0.31	0.53	0.1846	0.0839	RAB3GAP1->RAB3_GTPase_activating_protein_catalytic_subunit_1,chr2:135809835-135933964:+,MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase	NCIH1563_LUNG	0.31	0.53	0.2685	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	EEA1--C5orf50	22	6	EEA1	26894	chr12:93181643:-	C5orf50	42961	chr5:171217234:+	ONLY_REF_SPLICE	YES	34	0	0.45	1	0.1846	0.0504	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,C5orf50->chr5:171212876-171221602:+	NCIH1563_LUNG	0.45	1	0.235	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	FBXL7--RP1-167G20.1	13	2	FBXL7	3619	chr5:15616181:+	RP1-167G20.1	18878	chr5:16373945:-	ONLY_REF_SPLICE	YES	11	0	0.58	1	0.1091	0.0168	FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+,RP1-167G20.1->chr5:16373470-16440190:-	NCIH1563_LUNG	0.58	1	0.1259	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	EEA1--C5orf50	10	1	EEA1	25711	chr12:93192668:-	C5orf50	42961	chr5:171217234:+	ONLY_REF_SPLICE	YES	23	0	0.32	1	0.0839	0.0084	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,C5orf50->chr5:171212876-171221602:+	NCIH1563_LUNG	0.32	1	0.0923	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	MARCH6--FBXL7	4	0	MARCH6	1215	chr5:10354029:+	FBXL7	42106	chr5:15616092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	GTEx&tcga_normals:1/3694=0.03%,MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+	NCIH1563_LUNG	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	FBXL7--MARCH11	3	0	FBXL7	3619	chr5:15616181:+	MARCH11	15298	chr5:16177990:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+,MARCH11->chr5:16067248-16180871:-,membrane_associated_ring-CH-type_finger_11	NCIH1563_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	AP3B1--LHFPL2	2	0	AP3B1	3467	chr5:77536686:-	LHFPL2	54983	chr5:77784976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-,LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2	NCIH1563_LUNG	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	CHD6--GNAS	2	0	CHD6	1155	chr20:40246979:-	GNAS	67953	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1563_LUNG	1	1	0.0168	TRUE	0	1	0	2	0	TRUE	ACH-000892
NCIH1563_LUNG	FBXL7--MARCH11	2	0	FBXL7	3619	chr5:15616181:+	MARCH11	17649	chr5:16067902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+,MARCH11->chr5:16067248-16180871:-,membrane_associated_ring-CH-type_finger_11	NCIH1563_LUNG	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	KIF18A--BDNF	2	0	KIF18A	1245	chr11:28129611:-	BDNF	33116	chr11:27680132:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	KIF18A->chr11:28042167-28129855:-,kinesin_family_member_18A,BDNF->brain-derived_neurotrophic_factor,chr11:27676440-27743605:-	NCIH1563_LUNG	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	NBAS--FAM49A	2	0	NBAS	5992	chr2:15691617:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NCIH1563_LUNG	1	1	0.0168	TRUE	0	0	0	5	0	TRUE	ACH-000892
NCIH1563_LUNG	TEKT4P2--GNAS	2	0	TEKT4P2	2129	chr21:9966322:-	GNAS	26807	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	TEKT4P2->chr21:9907190-9968585:-,tektin_4_pseudogene_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1563_LUNG	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	ZIC5--PCCA	2	0	ZIC5	2783	chr13:100622381:-	PCCA	32312	chr13:100982815:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	ZIC5->Zic_family_member_5,chr13:100615218-100624163:-,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	NCIH1563_LUNG	1	1	0.0168	TRUE	0	0	0	2	0	TRUE	ACH-000892
HCC44_LUNG	ASAP1--RNF111	76	38	ASAP1	3357	chr8:131414131:-	RNF111	57220	chr15:59358963:+	ONLY_REF_SPLICE	YES	23	15	0.83	0.88	0.9577	0.4789	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,RNF111->chr15:59157374-59389618:+,ring_finger_protein_111	HCC44_LUNG	0.83	0.88	1.4366	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	BRWD3--POF1B	33	7	BRWD3	2150	chrX:80064038:-	POF1B	64340	chrX:84537323:-	ONLY_REF_SPLICE	YES	7	0	0.85	1	0.4158	0.0882	BRWD3->Oncogene{Bushman},bromodomain_and_WD_repeat_domain_containing_3,chrX:79926353-80065187:-,POF1B->chrX:84532402-84634748:-,premature_ovarian_failure,_1B	HCC44_LUNG	0.85	1	0.504	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	UBE2R2--PRSS3	28	9	UBE2R2	1368	chr9:33817932:+	PRSS3	16387	chr9:33796641:+	ONLY_REF_SPLICE	YES	59	2	0.39	0.95	0.3528	0.1134	LOCAL_REARRANGEMENT:+:[18335],UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,PRSS3->chr9:33750515-33799230:+,protease,_serine_3	HCC44_LUNG	0.39	0.95	0.4662	TRUE	0	1	0	1	0	TRUE	ACH-000667
HCC44_LUNG	FBXO11--AC018462.2	10	3	FBXO11	21841	chr2:48036297:-	AC018462.2	33955	chr2:62317936:-	ONLY_REF_SPLICE	YES	83	0	0.14	1	0.126	0.0378	FBXO11->F-box_protein_11,chr2:48016455-48132932:-,AC018462.2->chr2:62296582-62374016:-	HCC44_LUNG	0.14	1	0.1638	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	POLR1A--AFF3	4	12	POLR1A	18201	chr2:86276007:-	AFF3	66522	chr2:100210751:-	ONLY_REF_SPLICE	YES	46	0	0.26	1	0.0504	0.1512	{Klijn_CCL:Lung=1},POLR1A->chr2:86247339-86333278:-,polymerase_(RNA)_I_subunit_A,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	HCC44_LUNG	0.26	1	0.2016	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	SMURF2--RP13-104F24.1	6	4	SMURF2	13242	chr17:62567916:-	RP13-104F24.1	31389	chr17:62750772:-	ONLY_REF_SPLICE	YES	76	38	0.12	0.21	0.0756	0.0504	LOCAL_REARRANGEMENT:-:[87850],SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,RP13-104F24.1->chr17:62746036-62754721:-	HCC44_LUNG	0.12	0.21	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	PTPLB--STK3	6	2	PTPLB	3921	chr3:123286609:-	STK3	28032	chr8:99787047:-	ONLY_REF_SPLICE	YES	54	26	0.13	0.24	0.0756	0.0252	PTPLB->chr3:123209667-123304032:-,STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3	HCC44_LUNG	0.13	0.24	0.1008	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	PVT1--CASC8	4	7	PVT1	1202	chr8:128806980:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	623	1	0.02	0.92	0.0504	0.0882	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC44_LUNG	0.02	0.92	0.1386	TRUE	0	2	0	5	2	TRUE	ACH-000667
HCC44_LUNG	DNMBP--CRTAC1	5	2	DNMBP	6352	chr10:101714971:-	CRTAC1	32247	chr10:99696123:-	ONLY_REF_SPLICE	YES	34	0	0.17	1	0.063	0.0252	DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein,CRTAC1->cartilage_acidic_protein_1,chr10:99624757-99790585:-	HCC44_LUNG	0.17	1	0.0882	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	UBE2R2--PRSS3	2	10	UBE2R2	1368	chr9:33817932:+	PRSS3	13412	chr9:33762055:+	ONLY_REF_SPLICE	YES	59	0	0.17	1	0.0252	0.126	LOCAL_REARRANGEMENT:+:[18335],UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,PRSS3->chr9:33750515-33799230:+,protease,_serine_3	HCC44_LUNG	0.17	1	0.1512	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	ASAP1--RNF111	1	5	ASAP1	3357	chr8:131414131:-	RNF111	58540	chr15:59368153:+	ONLY_REF_SPLICE	NO	23	99	0.21	0.06	0.0126	0.063	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,RNF111->chr15:59157374-59389618:+,ring_finger_protein_111	HCC44_LUNG	0.06	0.21	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	BRIX1--LRRC8A	2	0	BRIX1	1522	chr5:34916002:+	LRRC8A	20466	chr9:131678375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	BRIX1->BRX1,_biogenesis_of_ribosomes,chr5:34915481-34926101:+,LRRC8A->chr9:131644391-131680318:+,leucine-rich_repeat_containing_8_family_member_A	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	CEP89--B3GNTL1	2	0	CEP89	20626	chr19:33392151:-	B3GNTL1	29867	chr17:81006661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	COL4A5--CHMP1A	2	0	COL4A5	33572	chrX:107869579:+	CHMP1A	60337	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	GTEx_v2:{count=1;pct=0.01%;dist=Bladder=1},COL4A5->chrX:107683074-107940775:+,collagen_type_IV_alpha_5,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HCC44_LUNG	1	1	0.0252	TRUE	0	1	0	1	0	TRUE	ACH-000667
HCC44_LUNG	DDHD1--HMGN4	2	0	DDHD1	4498	chr14:53570401:-	HMGN4	29697	chr6:26545355:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	DDHD1->DDHD_domain_containing_1,chr14:53510686-53620000:-,HMGN4->chr6:26538633-26546482:+,high_mobility_group_nucleosomal_binding_domain_4	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	MINK1--FAM3A	2	0	MINK1	17304	chr17:4800108:+	FAM3A	21983	chrX:153744136:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1,FAM3A->chrX:153733350-153744566:-,family_with_sequence_similarity_3_member_A	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	NHP2L1--XRCC6	2	0	NHP2L1	2186	chr22:42084798:-	XRCC6	17752	chr22:42042900:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LOCAL_INVERSION:-:+:[9890],NHP2L1->chr22:42069934-42086508:-,XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	2	0	TRUE	ACH-000667
HCC44_LUNG	TRIO--ZNF141	2	0	TRIO	65422	chr5:14502766:+	ZNF141	84571	chr4:376884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,ZNF141->chr4:331603-378653:+,zinc_finger_protein_141	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	U2SURP--AC005562.1	2	0	U2SURP	14940	chr3:142741504:+	AC005562.1	51216	chr17:28960116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+,AC005562.1->chr17:28903482-28999807:+	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	RP11-115J23.1--RP11-22P4.1	1	2	RP11-115J23.1	2304	chr11:28763455:+	RP11-22P4.1	13665	chr11:28445846:+	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0126	0.0252	RP11-115J23.1->chr11:28724162-29085368:+,RP11-22P4.1->chr11:28373654-28548588:+	HCC44_LUNG	0.3	1	0.0378	TRUE	0	0	0	1	0	TRUE	ACH-000667
ASPC1_PANCREAS	POLR1A--REEP1	16	8	POLR1A	14506	chr2:86292397:-	REEP1	47395	chr2:86509365:-	ONLY_REF_SPLICE	YES	44	0	0.35	1	0.1898	0.0949	POLR1A->chr2:86247339-86333278:-,polymerase_(RNA)_I_subunit_A,REEP1->chr2:86441116-86565206:-,receptor_accessory_protein_1	ASPC1_PANCREAS	0.35	1	0.2847	TRUE	0	4	0	1	4	TRUE	ACH-000222
ASPC1_PANCREAS	CCAT1--CASC8	3	22	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	25	0	0.5	1	0.0356	0.261	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	ASPC1_PANCREAS	0.5	1	0.2966	TRUE	0	26	0	18	24	TRUE	ACH-000222
ASPC1_PANCREAS	PXN--OGFOD2	7	6	PXN	10891	chr12:120659426:-	OGFOD2	24417	chr12:123460358:+	ONLY_REF_SPLICE	YES	341	32	0.04	0.29	0.0831	0.0712	PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,OGFOD2->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_2,chr12:123459127-123464590:+	ASPC1_PANCREAS	0.04	0.29	0.1543	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	RP11-551L14.4--DENND5B	5	7	RP11-551L14.4	2325	chr12:31152122:-	DENND5B	10868	chr12:31652605:-	ONLY_REF_SPLICE	YES	14	6	0.46	0.67	0.0593	0.0831	RP11-551L14.4->chr12:31149973-31158938:-,DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-	ASPC1_PANCREAS	0.46	0.67	0.1424	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	LY6E--S100A6	4	0	LY6E	4687	chr8:144103227:+	S100A6	9963	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	ASPC1_PANCREAS	1	1	0.0475	TRUE	0	0	0	7	0	TRUE	ACH-000222
ASPC1_PANCREAS	RP11-551L14.4--DENND5B	1	7	RP11-551L14.4	3689	chr12:31150346:-	DENND5B	10868	chr12:31652605:-	ONLY_REF_SPLICE	YES	5	6	0.62	0.57	0.0119	0.0831	RP11-551L14.4->chr12:31149973-31158938:-,DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-	ASPC1_PANCREAS	0.57	0.62	0.095	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	RP11-551L14.4--DENND5B	2	1	RP11-551L14.4	1207	chr12:31158732:-	DENND5B	10868	chr12:31652605:-	ONLY_REF_SPLICE	YES	7	6	0.3	0.33	0.0237	0.0119	RP11-551L14.4->chr12:31149973-31158938:-,DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-	ASPC1_PANCREAS	0.3	0.33	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	AC019117.2--AHR	2	0	AC019117.2	5389	chr7:17474572:-	AHR	10569	chr7:17349560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	LOCAL_INVERSION:-:+:[88325],AC019117.2->chr7:17474101-17500296:-,AHR->aryl_hydrocarbon_receptor,chr7:17338246-17385776:+	ASPC1_PANCREAS	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	ANXA11--TSPAN14	2	0	ANXA11	1230	chr10:81965099:-	TSPAN14	33514	chr10:82248973:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	ANXA11->annexin_A11,chr10:81910645-81965328:-,TSPAN14->chr10:82213922-82292879:+,tetraspanin_14	ASPC1_PANCREAS	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	CALM2--LRPPRC	2	0	CALM2	1161	chr2:47403580:-	LRPPRC	23258	chr2:44190845:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,LRPPRC->chr2:44113647-44223144:-,leucine_rich_pentatricopeptide_repeat_containing	ASPC1_PANCREAS	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	FAR1--RRAS2	2	0	FAR1	1137	chr11:13690353:+	RRAS2	30938	chr11:14317401:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	FAR1->chr11:13690217-13753893:+,fatty_acyl-CoA_reductase_1,RRAS2->Oncogene{Bushman},chr11:14299472-14386052:-,related_RAS_viral_(r-ras)_oncogene_homolog_2	ASPC1_PANCREAS	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	NUP54--TBC1D17	2	0	NUP54	1208	chr4:77069461:-	TBC1D17	24414	chr19:50386908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	NUP54->chr4:77035812-77069668:-,nucleoporin_54kDa,TBC1D17->TBC1_domain_family_member_17,chr19:50380682-50392005:+	ASPC1_PANCREAS	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	RP11-1029J19.5--AL132709.1	2	0	RP11-1029J19.5	1055	chr14:102197391:-	AL132709.1	7295	chr14:101543043:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	RP11-1029J19.5->chr14:102100791-102197445:-,AL132709.1->chr14:101540206-101544247:-	ASPC1_PANCREAS	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000222
NCIH226_LUNG	BCAR3--RP5-898J17.1	61	28	BCAR3	8673	chr1:94140170:-	RP5-898J17.1	32392	chr1:96769894:-	ONLY_REF_SPLICE	YES	112	0	0.44	1	0.8283	0.3802	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP5-898J17.1->chr1:96719625-96839681:-	NCIH226_LUNG	0.44	1	1.2085	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	GSK3B--AC026188.1	14	8	GSK3B	2071	chr3:119812194:-	AC026188.1	26755	chr3:3424314:-	INCL_NON_REF_SPLICE	YES	63	0	0.26	1	0.1901	0.1086	GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,AC026188.1->chr3:3292371-3668980:-	NCIH226_LUNG	0.26	1	0.2987	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	MED14-AS1--YWHAB	16	0	MED14-AS1	1118	chrX:40594769:+	YWHAB	5950	chr20:43514369:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2172	0	MED14-AS1->chrX:40594652-40597950:+,YWHAB->chr20:43514317-43537173:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_beta	NCIH226_LUNG	1	1	0.2172	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	PAFAH2--NR5A2	15	1	PAFAH2	1133	chr1:26324516:-	NR5A2	30254	chr1:200080330:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.2037	0.0136	PAFAH2->chr1:26286258-26324648:-,platelet_activating_factor_acetylhydrolase_2,NR5A2->chr1:199996730-200146552:+,nuclear_receptor_subfamily_5_group_A_member_2	NCIH226_LUNG	0.94	1	0.2173	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	GSK3B--AC026188.1	5	9	GSK3B	2071	chr3:119812194:-	AC026188.1	26735	chr3:3424334:-	ONLY_REF_SPLICE	YES	63	0	0.18	1	0.0679	0.1222	GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,AC026188.1->chr3:3292371-3668980:-	NCIH226_LUNG	0.18	1	0.1901	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	ROCK2--MYCNOS	5	8	ROCK2	7336	chr2:11375828:-	MYCNOS	39206	chr2:16081219:-	ONLY_REF_SPLICE	YES	23	0	0.36	1	0.0679	0.1086	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,MYCNOS->MYCN_opposite_strand,chr2:16061159-16082371:-	NCIH226_LUNG	0.36	1	0.1765	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	CELF1--KBTBD4	5	3	CELF1	3345	chr11:47574544:-	KBTBD4	34257	chr11:47597251:-	ONLY_REF_SPLICE	YES	219	37	0.04	0.18	0.0679	0.0407	LOCAL_INVERSION:-:-,chr11:[6628],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,KBTBD4->chr11:47593749-47600567:-,chr11:47599277-47599823:+,kelch_repeat_and_BTB_domain_containing_4	NCIH226_LUNG	0.04	0.18	0.1086	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	BCAR3--RP5-898J17.1	5	2	BCAR3	6854	chr1:94147154:-	RP5-898J17.1	32392	chr1:96769894:-	ONLY_REF_SPLICE	YES	43	0	0.14	1	0.0679	0.0272	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP5-898J17.1->chr1:96719625-96839681:-	NCIH226_LUNG	0.14	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	RBBP5--DSTYK	3	9	RBBP5	3256	chr1:205083917:-	DSTYK	21252	chr1:205138960:-	ONLY_REF_SPLICE	YES	66	49	0.15	0.2	0.0407	0.1222	LOCAL_REARRANGEMENT:-:[20489],RBBP5->Oncogene{Bushman},chr1:205055270-205091143:-,retinoblastoma_binding_protein_5,DSTYK->chr1:205111632-205180727:-,dual_serine/threonine_and_tyrosine_protein_kinase	NCIH226_LUNG	0.15	0.2	0.1629	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	PARP9--RP11-81N13.1	3	4	PARP9	1139	chr3:122283286:-	RP11-81N13.1	29845	chr3:67890446:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0407	0.0543	PARP9->chr3:122246771-122283424:-,poly(ADP-ribose)_polymerase_family_member_9,RP11-81N13.1->chr3:67705121-67998137:+	NCIH226_LUNG	0.64	1	0.095	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	BCAR3--RP5-898J17.1	1	10	BCAR3	8673	chr1:94140170:-	RP5-898J17.1	34247	chr1:96721306:-	ONLY_REF_SPLICE	NO	112	3	0.09	0.79	0.0136	0.1358	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP5-898J17.1->chr1:96719625-96839681:-	NCIH226_LUNG	0.09	0.79	0.1494	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	RP11-18H7.1--TF	3	2	RP11-18H7.1	1884	chr3:119814625:+	TF	17659	chr3:133475675:+	ONLY_REF_SPLICE	YES	1	2	0.83	0.71	0.0407	0.0272	RP11-18H7.1->chr3:119813742-119855630:+,TF->chr3:133464800-133497850:+,transferrin	NCIH226_LUNG	0.71	0.83	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	ANXA5--ALDH1A3	3	0	ANXA5	2572	chr4:122607489:-	ALDH1A3	17573	chr15:101420035:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	ANXA5->annexin_A5,chr4:122589110-122618268:-,ALDH1A3->aldehyde_dehydrogenase_1_family_member_A3,chr15:101417919-101456831:+	NCIH226_LUNG	1	1	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	RCC1--NFYB	3	0	RCC1	2175	chr1:28834672:+	NFYB	20792	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	NCIH226_LUNG	1	1	0.0407	TRUE	0	0	0	2	0	TRUE	ACH-000367
NCIH226_LUNG	RBMS3--SACM1L	2	3	RBMS3	8902	chr3:29804480:+	SACM1L	48329	chr3:45776727:+	ONLY_REF_SPLICE	YES	12	81	0.29	0.06	0.0272	0.0407	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,SACM1L->SAC1_suppressor_of_actin_mutations_1-like_(yeast),chr3:45730548-45786916:+	NCIH226_LUNG	0.06	0.29	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	F3--PSMA1	2	0	F3	1264	chr1:95007093:-	PSMA1	18376	chr11:14535245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	NCIH226_LUNG	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	GPBP1L1--COX4I1	2	0	GPBP1L1	1131	chr1:46153655:-	COX4I1	25678	chr16:85834811:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,COX4I1->chr16:85832239-85840650:+,cytochrome_c_oxidase_subunit_4I1	NCIH226_LUNG	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	MTERFD2--AHSA2	2	0	MTERFD2	11529	chr2:242028603:-	AHSA2	22701	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	MTERFD2->chr2:242011584-242041747:-,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	NCIH226_LUNG	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	RCC1--MRPL3	2	0	RCC1	2175	chr1:28834672:+	MRPL3	27527	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	NCIH226_LUNG	1	1	0.0272	TRUE	0	0	0	6	0	TRUE	ACH-000367
NCIH226_LUNG	UBE2D2--PSMA1	2	0	UBE2D2	5520	chr5:138994202:+	PSMA1	20154	chr11:14535245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	NCIH226_LUNG	1	1	0.0272	TRUE	0	1	0	1	0	TRUE	ACH-000367
HEC6_ENDOMETRIUM	SOCS4--WDHD1	80	49	SOCS4	2658	chr14:55498709:+	WDHD1	15706	chr14:55477178:-	ONLY_REF_SPLICE	YES	24	47	0.84	0.73	0.9282	0.5685	LOCAL_INVERSION:+:-:[125],SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4,WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-	HEC6_ENDOMETRIUM	0.73	0.84	1.4967	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	C2orf69--ROCK2	59	47	C2orf69	1516	chr2:200776494:+	ROCK2	13051	chr2:11427862:-	ONLY_REF_SPLICE	YES	26	24	0.8	0.82	0.6846	0.5453	C2orf69->chr2:200775979-200820658:+,chromosome_2_open_reading_frame_69,ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-	HEC6_ENDOMETRIUM	0.8	0.82	1.2299	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	ZHX1--ATAD2	22	18	ZHX1	2420	chr8:124286362:-	ATAD2	27973	chr8:124369976:-	ONLY_REF_SPLICE	YES	34	47	0.54	0.46	0.2553	0.2089	LOCAL_REARRANGEMENT:-:[44309],ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	HEC6_ENDOMETRIUM	0.46	0.54	0.4642	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	VPS54--PELI1	19	8	VPS54	2291	chr2:64210998:-	PELI1	31702	chr2:64335513:-	ONLY_REF_SPLICE	YES	18	27	0.6	0.5	0.2205	0.0928	LOCAL_REARRANGEMENT:-:[73580],VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-,PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1	HEC6_ENDOMETRIUM	0.5	0.6	0.3133	TRUE	0	1	0	1	1	TRUE	ACH-000984
HEC6_ENDOMETRIUM	ZHX1--ATAD2	12	11	ZHX1	2325	chr8:124286457:-	ATAD2	27973	chr8:124369976:-	ONLY_REF_SPLICE	YES	19	47	0.55	0.33	0.1392	0.1276	LOCAL_REARRANGEMENT:-:[44309],ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	HEC6_ENDOMETRIUM	0.33	0.55	0.2668	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	SOCS4--WDHD1	10	18	SOCS4	1242	chr14:55494189:+	WDHD1	15706	chr14:55477178:-	ONLY_REF_SPLICE	YES	30	47	0.48	0.37	0.116	0.2089	LOCAL_INVERSION:+:-:[125],SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4,WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-	HEC6_ENDOMETRIUM	0.37	0.48	0.3249	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	RAB3IP--PTPRB	12	6	RAB3IP	4471	chr12:70150443:+	PTPRB	28780	chr12:71016426:-	ONLY_REF_SPLICE	YES	59	0	0.23	1	0.1392	0.0696	RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+,PTPRB->chr12:70910630-71031220:-,protein_tyrosine_phosphatase,_receptor_type_B	HEC6_ENDOMETRIUM	0.23	1	0.2088	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	FAM111B--GLYATL1P3	8	9	FAM111B	3151	chr11:58877179:+	GLYATL1P3	12550	chr11:58861002:+	ONLY_REF_SPLICE	YES	50	21	0.25	0.45	0.0928	0.1044	LOCAL_REARRANGEMENT:+:[12399],FAM111B->chr11:58874658-58894883:+,family_with_sequence_similarity_111_member_B,GLYATL1P3->chr11:58853780-58862259:+,glycine-N-acyltransferase_like_1_pseudogene_3	HEC6_ENDOMETRIUM	0.25	0.45	0.1972	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	ROCK2--C2orf69	8	9	ROCK2	2753	chr2:11484122:-	C2orf69	39570	chr2:200789785:+	ONLY_REF_SPLICE	YES	19	26	0.47	0.4	0.0928	0.1044	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,C2orf69->chr2:200775979-200820658:+,chromosome_2_open_reading_frame_69	HEC6_ENDOMETRIUM	0.4	0.47	0.1972	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	VPS54--PELI1	9	1	VPS54	1135	chr2:64246072:-	PELI1	31702	chr2:64335513:-	ONLY_REF_SPLICE	YES	3	27	0.77	0.27	0.1044	0.0116	LOCAL_REARRANGEMENT:-:[73580],VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-,PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1	HEC6_ENDOMETRIUM	0.27	0.77	0.116	TRUE	0	2	0	1	2	TRUE	ACH-000984
HEC6_ENDOMETRIUM	WDHD1--SOCS4	4	9	WDHD1	8205	chr14:55467698:-	SOCS4	30487	chr14:55494283:+	INCL_NON_REF_SPLICE	YES	50	27	0.21	0.33	0.0464	0.1044	LOCAL_INVERSION:-:+:[125],WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-,SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4	HEC6_ENDOMETRIUM	0.21	0.33	0.1508	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	TRAF7--KCTD5	6	0	TRAF7	1161	chr16:2205859:+	KCTD5	25488	chr16:2757299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0696	0	TRAF7->Oncogene{Bushman},TNF_receptor_associated_factor_7,chr16:2205699-2228130:+,KCTD5->chr16:2732476-2759031:+,potassium_channel_tetramerization_domain_containing_5	HEC6_ENDOMETRIUM	1	1	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	FAM111B--GLYATL1P3	5	2	FAM111B	2157	chr11:58876185:+	GLYATL1P3	12550	chr11:58861002:+	ONLY_REF_SPLICE	YES	24	21	0.23	0.25	0.058	0.0232	LOCAL_REARRANGEMENT:+:[12399],FAM111B->chr11:58874658-58894883:+,family_with_sequence_similarity_111_member_B,GLYATL1P3->chr11:58853780-58862259:+,glycine-N-acyltransferase_like_1_pseudogene_3	HEC6_ENDOMETRIUM	0.23	0.25	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	VPS54--PELI1	3	10	VPS54	3533	chr2:64208780:-	PELI1	31702	chr2:64335513:-	ONLY_REF_SPLICE	YES	25	27	0.34	0.33	0.0348	0.116	LOCAL_REARRANGEMENT:-:[73580],VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-,PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1	HEC6_ENDOMETRIUM	0.33	0.34	0.1508	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	LRP5--CCND1	5	0	LRP5	2594	chr11:68115711:+	CCND1	37436	chr11:69462762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.058	0	LRP5->LDL_receptor_related_protein_5,Oncogene{Bushman},chr11:68080077-68216743:+,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	HEC6_ENDOMETRIUM	1	1	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	PFKFB3--RBM17	4	0	PFKFB3	1096	chr10:6186976:+	RBM17	27573	chr10:6139011:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[27461],PFKFB3->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_3,chr10:6186881-6277495:+,RBM17->RNA_binding_motif_protein_17,chr10:6130950-6159420:+	HEC6_ENDOMETRIUM	1	1	0.0464	TRUE	0	0	0	2	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	C2orf69--ROCK2	1	10	C2orf69	1516	chr2:200776494:+	ROCK2	15234	chr2:11389924:-	ONLY_REF_SPLICE	YES	26	53	0.3	0.17	0.0116	0.116	C2orf69->chr2:200775979-200820658:+,chromosome_2_open_reading_frame_69,ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-	HEC6_ENDOMETRIUM	0.17	0.3	0.1276	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	LRP5--CCND1	3	0	LRP5	2594	chr11:68115711:+	CCND1	38683	chr11:69465886:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	LRP5->LDL_receptor_related_protein_5,Oncogene{Bushman},chr11:68080077-68216743:+,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	HEC6_ENDOMETRIUM	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	SOCS4--WDHD1	1	8	SOCS4	2658	chr14:55498709:+	WDHD1	16858	chr14:55475437:-	ONLY_REF_SPLICE	YES	24	50	0.27	0.15	0.0116	0.0928	LOCAL_INVERSION:+:-:[125],SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4,WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-	HEC6_ENDOMETRIUM	0.15	0.27	0.1044	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	DANCR--CYHR1	2	0	DANCR	1530	chr4:53579126:+	CYHR1	16157	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	MKL1--ST13	2	0	MKL1	2287	chr22:40990678:-	ST13	25915	chr22:41246884:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	1	0	1	1	TRUE	ACH-000984
HEC6_ENDOMETRIUM	PIGQ--CAPN15	2	0	PIGQ	3528	chr16:619795:+	CAPN15	30802	chr16:601302:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:+:[12359],PIGQ->chr16:616995-634136:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_Q,CAPN15->calpain_15,chr16:577717-604636:+	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	RAB20--IRS2	2	0	RAB20	1386	chr13:111213695:-	IRS2	12042	chr13:110408655:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RAB20->RAB20,_member_RAS_oncogene_family,chr13:111175417-111214080:-,IRS2->ArcherDX_panel,FoundationOne_panel,chr13:110406184-110438915:-,insulin_receptor_substrate_2	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	1	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	SLCO4A1--PSMA7	2	0	SLCO4A1	1109	chr20:61273905:+	PSMA7	20024	chr20:60716000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	SLCO4A1--RNF166	2	0	SLCO4A1	1109	chr20:61273905:+	RNF166	23072	chr16:88766140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,RNF166->chr16:88762903-88772829:-,ring_finger_protein_166	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	TP73-AS1--LRRC47	2	0	TP73-AS1	2730	chr1:3662171:-	LRRC47	14719	chr1:3703874:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:-:[32884],TP73-AS1->TP73_antisense_RNA_1,chr1:3652548-3663900:-,LRRC47->chr1:3696784-3713068:-,leucine_rich_repeat_containing_47	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	TRAF7--KCTD5	2	0	TRAF7	1161	chr16:2205859:+	KCTD5	19671	chr16:2745936:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TRAF7->Oncogene{Bushman},TNF_receptor_associated_factor_7,chr16:2205699-2228130:+,KCTD5->chr16:2732476-2759031:+,potassium_channel_tetramerization_domain_containing_5	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000984
HMCB_SKIN	EWSR1--CREM	451	212	EWSR1	11554	chr22:29683123:+	CREM	42362	chr10:35495823:+	ONLY_REF_SPLICE	YES	289	160	0.7	0.81	5.0351	2.3668	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	0.7	0.81	7.4019	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	EWSR1--CREM	34	215	EWSR1	12735	chr22:29684775:+	CREM	42362	chr10:35495823:+	ONLY_REF_SPLICE	YES	99	160	0.72	0.61	0.3796	2.4003	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	0.61	0.72	2.7799	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-94A24.1	71	24	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7927	0.2679	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	HMCB_SKIN	1	1	1.0606	TRUE	0	2	0	7	2	TRUE	ACH-000931
HMCB_SKIN	SCARF2--ZNF74	60	37	SCARF2	7345	chr22:20780420:-	ZNF74	14733	chr22:20754338:+	INCL_NON_REF_SPLICE	YES	488	79	0.17	0.55	0.6699	0.4131	LOCAL_INVERSION:-:+:[16129],SCARF2->chr22:20778874-20792146:-,scavenger_receptor_class_F_member_2,ZNF74->chr22:20748405-20762745:+,zinc_finger_protein_74	HMCB_SKIN	0.17	0.55	1.083	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-557C18.4	62	19	RP11-973F15.1	1734	chr8:123705612:-	RP11-557C18.4	7865	chr8:123989465:-	ONLY_REF_SPLICE	YES	241	0	0.25	1	0.6922	0.2121	RP11-973F15.1->chr8:123682624-123706345:-,RP11-557C18.4->chr8:123989266-123997869:-	HMCB_SKIN	0.25	1	0.9043	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	CHD6--RP5-1010E17.1	58	2	CHD6	1155	chr20:40246979:-	RP5-1010E17.1	56068	chr20:54054667:+	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.6475	0.0223	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,RP5-1010E17.1->chr20:54039549-54084752:+	HMCB_SKIN	0.97	1	0.6698	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	EWSR1--CREM	2	214	EWSR1	12704	chr22:29684744:+	CREM	42362	chr10:35495823:+	ONLY_REF_SPLICE	YES	81	160	0.73	0.57	0.0223	2.3892	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	0.57	0.73	2.4115	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	MCFD2--HPCAL1	47	2	MCFD2	2674	chr2:47142862:-	HPCAL1	21336	chr2:10536961:+	ONLY_REF_SPLICE	YES	18	19	0.73	0.72	0.5247	0.0223	HGNC_GENEFAM,MCFD2->chr2:47129009-47168994:-,multiple_coagulation_factor_deficiency_2,HPCAL1->chr2:10443015-10567743:+,hippocalcin_like_1	HMCB_SKIN	0.72	0.73	0.547	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	EWSR1--CREM	9	111	EWSR1	12704	chr22:29684744:+	CREM	42421	chr10:35495882:+	INCL_NON_REF_SPLICE	YES	81	647	0.6	0.16	0.1005	1.2392	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	0.16	0.6	1.3397	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-557C18.4	32	13	RP11-973F15.1	1226	chr8:123706120:-	RP11-557C18.4	7865	chr8:123989465:-	ONLY_REF_SPLICE	YES	238	0	0.16	1	0.3573	0.1451	RP11-973F15.1->chr8:123682624-123706345:-,RP11-557C18.4->chr8:123989266-123997869:-	HMCB_SKIN	0.16	1	0.5024	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	EWSR1--CREM	3	110	EWSR1	11554	chr22:29683123:+	CREM	42421	chr10:35495882:+	INCL_NON_REF_SPLICE	YES	289	647	0.28	0.15	0.0335	1.2281	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	0.15	0.28	1.2616	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-96B2.1	27	6	RP11-973F15.1	3763	chr8:123682599:-	RP11-96B2.1	7930	chr8:123499705:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3014	0.067	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	HMCB_SKIN	1	1	0.3684	TRUE	0	2	0	4	2	TRUE	ACH-000931
HMCB_SKIN	TBL1XR1-AS1--RP11-292E2.4	17	3	TBL1XR1-AS1	1136	chr3:176762784:+	RP11-292E2.4	5416	chr3:153149646:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1898	0.0335	TBL1XR1-AS1->TBL1XR1_antisense_RNA_1,chr3:176762649-176765711:+,RP11-292E2.4->chr3:153149645-153161320:+	HMCB_SKIN	1	1	0.2233	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	CHD6--RP5-1010E17.1	17	2	CHD6	1155	chr20:40246979:-	RP5-1010E17.1	57243	chr20:54065403:+	ONLY_REF_SPLICE	YES	2	13	0.9	0.59	0.1898	0.0223	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,RP5-1010E17.1->chr20:54039549-54084752:+	HMCB_SKIN	0.59	0.9	0.2121	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	EWSR1--CREM	2	38	EWSR1	10342	chr22:29678546:+	CREM	42362	chr10:35495823:+	ONLY_REF_SPLICE	YES	492	160	0.08	0.2	0.0223	0.4242	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	0.08	0.2	0.4465	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	ETV5--RP11-48F14.1	8	3	ETV5	15237	chr3:185774864:-	RP11-48F14.1	28618	chr3:186174335:-	ONLY_REF_SPLICE	YES	97	4	0.1	0.73	0.0893	0.0335	ETV5->ArcherDX_panel,ETS_variant_5,FoundationOne_panel,Oncogene{Bushman},chr3:185764097-185828107:-,RP11-48F14.1->chr3:186172771-186211450:-	HMCB_SKIN	0.1	0.73	0.1228	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	ETV5--RP11-48F14.1	7	4	ETV5	15237	chr3:185774864:-	RP11-48F14.1	27534	chr3:186175419:-	ONLY_REF_SPLICE	YES	97	0	0.1	1	0.0782	0.0447	ETV5->ArcherDX_panel,ETS_variant_5,FoundationOne_panel,Oncogene{Bushman},chr3:185764097-185828107:-,RP11-48F14.1->chr3:186172771-186211450:-	HMCB_SKIN	0.1	1	0.1229	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	CHD6--RP5-1010E17.1	7	1	CHD6	1155	chr20:40246979:-	RP5-1010E17.1	61367	chr20:54084629:+	ONLY_REF_SPLICE	YES	2	15	0.8	0.35	0.0782	0.0112	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,RP5-1010E17.1->chr20:54039549-54084752:+	HMCB_SKIN	0.35	0.8	0.0894	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	CHD6--RP5-1010E17.1	6	1	CHD6	1155	chr20:40246979:-	RP5-1010E17.1	60243	chr20:54083355:+	ONLY_REF_SPLICE	YES	2	19	0.78	0.27	0.067	0.0112	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,RP5-1010E17.1->chr20:54039549-54084752:+	HMCB_SKIN	0.27	0.78	0.0782	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	FAM135B--COL22A1	5	4	FAM135B	1152	chr8:139508914:-	COL22A1	110829	chr8:139609213:-	ONLY_REF_SPLICE	YES	5	37	0.64	0.2	0.0558	0.0447	LOCAL_REARRANGEMENT:-:[91413],FAM135B->chr8:139142266-139509065:-,family_with_sequence_similarity_135_member_B,COL22A1->chr8:139600478-139926249:-,collagen_type_XXII_alpha_1	HMCB_SKIN	0.2	0.64	0.1005	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-94A24.1	2	11	RP11-973F15.1	2854	chr8:123683508:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	72	0	0.15	1	0.0223	0.1228	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	HMCB_SKIN	0.15	1	0.1451	TRUE	0	2	0	7	2	TRUE	ACH-000931
HMCB_SKIN	AL163953.3--PTGER2	4	2	AL163953.3	3068	chr14:53684773:+	PTGER2	15234	chr14:52793939:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0447	0.0223	AL163953.3->chr14:53635772-54153976:+,PTGER2->chr14:52781023-52795324:+,prostaglandin_E_receptor_2	HMCB_SKIN	0.86	1	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-96B2.1	4	1	RP11-973F15.1	1226	chr8:123706120:-	RP11-96B2.1	7930	chr8:123499705:-	ONLY_REF_SPLICE	YES	238	0	0.02	1	0.0447	0.0112	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	HMCB_SKIN	0.02	1	0.0559	TRUE	0	8	0	3	8	TRUE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-94A24.1	2	7	RP11-973F15.1	1226	chr8:123706120:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	238	0	0.04	1	0.0223	0.0782	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	HMCB_SKIN	0.04	1	0.1005	TRUE	0	2	0	5	1	TRUE	ACH-000931
HMCB_SKIN	DDHD2--BAG4	3	1	DDHD2	24435	chr8:38130960:+	BAG4	30243	chr8:38050206:+	ONLY_REF_SPLICE	YES	0	32	1	0.11	0.0335	0.0112	LOCAL_REARRANGEMENT:+:[11917],DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+,BAG4->BCL2_associated_athanogene_4,chr8:38034051-38070819:+	HMCB_SKIN	0.11	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	EWSR1--CREM	3	0	EWSR1	10283	chr22:29678487:+	CREM	43921	chr10:35500584:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	SLC7A2--COL11A1	3	0	SLC7A2	16641	chr8:17422837:+	COL11A1	53027	chr1:103449723:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	SLC7A2->chr8:17354597-17428082:+,solute_carrier_family_7_member_2,COL11A1->Oncogene{Bushman},chr1:103342023-103574052:-,collagen_type_XI_alpha_1	HMCB_SKIN	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	SLC7A5--ATP5G2	3	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	HMCB_SKIN	1	1	0.0335	TRUE	0	0	0	7	0	TRUE	ACH-000931
HMCB_SKIN	MCFD2--HPCAL1	2	2	MCFD2	1284	chr2:47168711:-	HPCAL1	21336	chr2:10536961:+	ONLY_REF_SPLICE	YES	15	19	0.21	0.17	0.0223	0.0223	HGNC_GENEFAM,MCFD2->chr2:47129009-47168994:-,multiple_coagulation_factor_deficiency_2,HPCAL1->chr2:10443015-10567743:+,hippocalcin_like_1	HMCB_SKIN	0.17	0.21	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RASL10A--RP11-324I22.2	2	1	RASL10A	1371	chr22:29715298:-	RP11-324I22.2	9369	chr10:35509028:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0223	0.0112	RASL10A->RAS_like_family_10_member_A,chr22:29708922-29715668:-,RP11-324I22.2->chr10:35508822-35519526:-	HMCB_SKIN	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	CPOX--NSUN3	2	0	CPOX	3299	chr3:98309476:-	NSUN3	24885	chr3:93845055:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	CPOX->chr3:98239976-98312567:-,coproporphyrinogen_oxidase,NSUN3->NOP2/Sun_RNA_methyltransferase_family_member_3,chr3:93781760-93847389:+	HMCB_SKIN	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	FAM135B--COL22A1	1	4	FAM135B	1152	chr8:139508914:-	COL22A1	111896	chr8:139606442:-	ONLY_REF_SPLICE	YES	5	28	0.5	0.15	0.0112	0.0447	LOCAL_REARRANGEMENT:-:[91413],FAM135B->chr8:139142266-139509065:-,family_with_sequence_similarity_135_member_B,COL22A1->chr8:139600478-139926249:-,collagen_type_XXII_alpha_1	HMCB_SKIN	0.15	0.5	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	HS2ST1--SEP15	2	0	HS2ST1	1513	chr1:87380843:+	SEP15	26013	chr1:87369131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	HMCB_SKIN	1	1	0.0223	TRUE	0	2	0	9	0	TRUE	ACH-000931
HMCB_SKIN	TMLHE--VAMP7	2	0	TMLHE	2332	chrX:154842453:-	VAMP7	22451	chrX:155169365:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,VAMP7->chrX:155110956-155173433:+,chrY:59213962-59276439:+,vesicle_associated_membrane_protein_7	HMCB_SKIN	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	MCFD2--HPCAL1	1	2	MCFD2	2674	chr2:47142862:-	HPCAL1	20170	chr2:10494342:+	ONLY_REF_SPLICE	YES	18	19	0.14	0.14	0.0112	0.0223	HGNC_GENEFAM,MCFD2->chr2:47129009-47168994:-,multiple_coagulation_factor_deficiency_2,HPCAL1->chr2:10443015-10567743:+,hippocalcin_like_1	HMCB_SKIN	0.14	0.14	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000931
SKMEL24_SKIN	PDIA4--S100B	3	0	PDIA4	6371	chr7:148709401:-	S100B	15347	chr21:48024983:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	PDIA4->chr7:148700154-148725733:-,protein_disulfide_isomerase_family_A_member_4,S100B->Oncogene{Bushman},S100_calcium_binding_protein_B,chr21:48018875-48025121:-	SKMEL24_SKIN	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	SERPINE2--TIMP3	3	0	SERPINE2	7414	chr2:224866602:-	TIMP3	27505	chr22:33255755:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2,TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+	SKMEL24_SKIN	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	DCAF8--COPA	2	0	DCAF8	1076	chr1:160254845:-	COPA	34168	chr1:160295442:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	HGNC_GENEFAM,LOCAL_INVERSION:-,chr1:-:[4143],DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	ERRFI1--UBE2J2	2	0	ERRFI1	1151	chr1:8086218:-	UBE2J2	19343	chr1:1192690:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-,UBE2J2->chr1:1189289-1209265:-,ubiquitin_conjugating_enzyme_E2_J2	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	MBTD1--RSAD1	2	0	MBTD1	2021	chr17:49336504:-	RSAD1	27838	chr17:48559452:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1,RSAD1->chr17:48556161-48563336:+,radical_S-adenosyl_methionine_domain_containing_1	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	MOSPD2--PIR	2	0	MOSPD2	1318	chrX:14891880:+	PIR	32654	chrX:15425672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	MOSPD2->chrX:14891563-14940449:+,motile_sperm_domain_containing_2,PIR->chrX:15402921-15511687:-,pirin	SKMEL24_SKIN	1	1	0.0187	TRUE	1	9	0	3	1	TRUE	ACH-000822
SKMEL24_SKIN	RAB8B--ANXA2	2	0	RAB8B	1280	chr15:63481947:+	ANXA2	29428	chr15:60678285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},{Klijn_CCL:Urinary_Bladder=1},RAB8B->RAB8B,_member_RAS_oncogene_family,chr15:63481668-63559981:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	2	0	TRUE	ACH-000822
SKMEL24_SKIN	SPARC--MFSD12	2	0	SPARC	8469	chr5:151051134:-	MFSD12	27039	chr19:3547545:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,MFSD12->chr19:3538259-3574288:-,major_facilitator_superfamily_domain_containing_12	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	TEAD1--BTBD10	2	0	TEAD1	2140	chr11:12697108:+	BTBD10	34078	chr11:13443385:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,BTBD10->BTB_domain_containing_10,chr11:13409548-13484844:-	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	ZEB2--TEX41	2	0	ZEB2	5479	chr2:145274845:-	TEX41	71079	chr2:145929565:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,TEX41->chr2:145425534-145940216:+,testis_expressed_41_(non-protein_coding)	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	RP11-141M1.3--MYO1D	1	1	RP11-141M1.3	5599	chr13:34098375:-	MYO1D	50383	chr17:30821933:-	ONLY_REF_SPLICE	NO	31	8	0.06	0.2	0.0093	0.0093	RP11-141M1.3->chr13:33929343-34250905:-,MYO1D->chr17:30819540-31204195:-,myosin_ID	SKMEL24_SKIN	0.06	0.2	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000822
SNU61_LARGE_INTESTINE	NAPEPLD--POU2F3	72	34	NAPEPLD	3910	chr7:102768930:-	POU2F3	20661	chr11:120168974:+	ONLY_REF_SPLICE	YES	26	0	0.8	1	0.694	0.3277	NAPEPLD->N-acyl_phosphatidylethanolamine_phospholipase_D,chr7:102740223-102790007:-,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	SNU61_LARGE_INTESTINE	0.8	1	1.0217	TRUE	0	0	0	1	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	ANP32B--NCL	65	0	ANP32B	8161	chr9:100773632:+	NCL	19608	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6265	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU61_LARGE_INTESTINE	1	1	0.6265	TRUE	0	0	0	7	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	ITGB1BP1--SPDYA	25	8	ITGB1BP1	4481	chr2:9558755:-	SPDYA	25647	chr2:29041914:+	ONLY_REF_SPLICE	YES	142	0	0.19	1	0.241	0.0771	ITGB1BP1->chr2:9543604-9563676:-,integrin_subunit_beta_1_binding_protein_1,SPDYA->chr2:29005383-29073477:+,speedy/RINGO_cell_cycle_regulator_family_member_A	SNU61_LARGE_INTESTINE	0.19	1	0.3181	TRUE	0	0	0	1	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	ANP32B--NCL	14	0	ANP32B	8117	chr9:100773588:+	NCL	19615	chr2:232325481:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1349	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU61_LARGE_INTESTINE	1	1	0.1349	TRUE	0	0	0	7	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	ANP32B--NCL	3	0	ANP32B	8152	chr9:100773623:+	NCL	19608	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU61_LARGE_INTESTINE	1	1	0.0289	TRUE	0	0	0	7	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	DCUN1D1--MKI67	2	0	DCUN1D1	4385	chr3:182683467:-	MKI67	22422	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	DCUN1D1->chr3:182655862-182703741:-,defective_in_cullin_neddylation_1_domain_containing_1,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	SNU61_LARGE_INTESTINE	1	1	0.0193	TRUE	0	0	0	2	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	MTHFD2--RP11-1094M14.11	2	0	MTHFD2	5101	chr2:74435848:+	RP11-1094M14.11	16749	chr17:33900896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	MTHFD2->chr2:74425689-74444692:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_2,_methenyltetrahydrofolate_cyclohydrolase,RP11-1094M14.11->chr17:33895139-33901811:+	SNU61_LARGE_INTESTINE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	RP4-633O19__A.1--MYH9	2	0	RP4-633O19__A.1	1110	chr22:36784780:+	MYH9	9409	chr22:36737571:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	LOCAL_INVERSION:+:-:[608],RP4-633O19__A.1->chr22:36784671-36792562:+,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	SNU61_LARGE_INTESTINE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	RP11-20I20.2--CTBP1	1	1	RP11-20I20.2	1114	chr4:1107540:+	CTBP1	8481	chr4:1235307:-	ONLY_REF_SPLICE	NO	0	24	1	0.08	0.0096	0.0096	LOCAL_INVERSION:+:-:[78471],RP11-20I20.2->chr4:1107427-1126765:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SNU61_LARGE_INTESTINE	0.08	1	0.0192	TRUE	0	1	1	6	1	TRUE	ACH-000532
JHOS2_OVARY	FAM102A--CIZ1	89	30	FAM102A	1522	chr9:130742271:-	CIZ1	19522	chr9:130953141:-	ONLY_REF_SPLICE	YES	47	16	0.72	0.88	0.9629	0.3246	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-	JHOS2_OVARY	0.72	0.88	1.2875	TRUE	0	1	0	1	1	TRUE	ACH-000132
JHOS2_OVARY	SLC35E2B--KIAA2013	49	34	SLC35E2B	1280	chr1:1623888:-	KIAA2013	19939	chr1:11983546:-	ONLY_REF_SPLICE	YES	23	141	0.78	0.37	0.5301	0.3678	SLC35E2B->chr1:1592939-1624167:-,solute_carrier_family_35_member_E2B,KIAA2013->KIAA2013,chr1:11979648-11986485:-	JHOS2_OVARY	0.37	0.78	0.8979	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	IRF3--FBP2	44	45	IRF3	4451	chr19:50165682:-	FBP2	17296	chr9:97321318:-	INCL_NON_REF_SPLICE	YES	282	1	0.24	0.99	0.476	0.4869	IRF3->chr19:50162826-50169132:-,interferon_regulatory_factor_3,FBP2->chr9:97321002-97356075:-,fructose-bisphosphatase_2	JHOS2_OVARY	0.24	0.99	0.9629	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	DUS1L--CCDC57	48	18	DUS1L	4027	chr17:80020737:-	CCDC57	49744	chr17:80059742:-	ONLY_REF_SPLICE	YES	454	42	0.13	0.61	0.5193	0.1947	LOCAL_REARRANGEMENT:-:[35573],DUS1L->chr17:80015382-80023763:-,dihydrouridine_synthase_1_like,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	JHOS2_OVARY	0.13	0.61	0.714	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	SAMD4B--PPFIA3	35	33	SAMD4B	8437	chr19:39847729:+	PPFIA3	42351	chr19:49651340:+	ONLY_REF_SPLICE	YES	51	0	0.57	1	0.3787	0.357	HGNC_GENEFAM,SAMD4B->chr19:39833036-39876350:+,sterile_alpha_motif_domain_containing_4B,PPFIA3->PTPRF_interacting_protein_alpha_3,chr19:49622646-49654283:+	JHOS2_OVARY	0.57	1	0.7357	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	STK24--DOCK9	35	4	STK24	2156	chr13:99228999:-	DOCK9	72398	chr13:99462545:-	ONLY_REF_SPLICE	YES	13	58	0.75	0.4	0.3787	0.0433	STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24,DOCK9->chr13:99445741-99738879:-,dedicator_of_cytokinesis_9	JHOS2_OVARY	0.4	0.75	0.422	TRUE	0	1	0	2	1	TRUE	ACH-000132
JHOS2_OVARY	THEM6--FANCI	32	14	THEM6	1657	chr8:143809277:+	FANCI	35148	chr15:89844557:+	ONLY_REF_SPLICE	YES	35	91	0.57	0.34	0.3462	0.1515	THEM6->chr8:143808621-143818345:+,thioesterase_superfamily_member_6,FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+	JHOS2_OVARY	0.34	0.57	0.4977	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	IRF3--FBP2	9	60	IRF3	4537	chr19:50165596:-	FBP2	17284	chr9:97321330:-	INCL_NON_REF_SPLICE	YES	292	1	0.19	0.99	0.0974	0.6491	IRF3->chr19:50162826-50169132:-,interferon_regulatory_factor_3,FBP2->chr9:97321002-97356075:-,fructose-bisphosphatase_2	JHOS2_OVARY	0.19	0.99	0.7465	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	SLC35E2B--KIAA2013	9	45	SLC35E2B	2698	chr1:1622415:-	KIAA2013	19939	chr1:11983546:-	ONLY_REF_SPLICE	YES	30	141	0.64	0.28	0.0974	0.4869	SLC35E2B->chr1:1592939-1624167:-,solute_carrier_family_35_member_E2B,KIAA2013->KIAA2013,chr1:11979648-11986485:-	JHOS2_OVARY	0.28	0.64	0.5843	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	SAMD4B--PPFIA3	14	11	SAMD4B	8437	chr19:39847729:+	PPFIA3	42934	chr19:49651923:+	ONLY_REF_SPLICE	YES	51	18	0.33	0.58	0.1515	0.119	HGNC_GENEFAM,SAMD4B->chr19:39833036-39876350:+,sterile_alpha_motif_domain_containing_4B,PPFIA3->PTPRF_interacting_protein_alpha_3,chr19:49622646-49654283:+	JHOS2_OVARY	0.33	0.58	0.2705	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	DUS1L--CCDC57	6	26	DUS1L	4027	chr17:80020737:-	CCDC57	46073	chr17:80065497:-	ONLY_REF_SPLICE	YES	454	12	0.07	0.73	0.0649	0.2813	LOCAL_REARRANGEMENT:-:[35573],DUS1L->chr17:80015382-80023763:-,dihydrouridine_synthase_1_like,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	JHOS2_OVARY	0.07	0.73	0.3462	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	RP11-973F15.1--RP11-94A24.1	10	9	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1082	0.0974	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	JHOS2_OVARY	1	1	0.2056	TRUE	0	2	0	7	2	TRUE	ACH-000132
JHOS2_OVARY	UBE3C--TNNC1	9	8	UBE3C	15765	chr7:157000629:+	TNNC1	34858	chr3:52486529:-	ONLY_REF_SPLICE	YES	155	1	0.1	0.94	0.0974	0.0866	UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C,TNNC1->chr3:52485118-52488086:-,troponin_C1,_slow_skeletal_and_cardiac_type	JHOS2_OVARY	0.1	0.94	0.184	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	SCAF4--KCNE1	4	10	SCAF4	15111	chr21:33060620:-	KCNE1	27833	chr21:35831062:-	ONLY_REF_SPLICE	YES	47	0	0.23	1	0.0433	0.1082	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,KCNE1->chr21:35818988-35884573:-,potassium_voltage-gated_channel_subfamily_E_regulatory_subunit_1	JHOS2_OVARY	0.23	1	0.1515	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	CNNM4--GBP1	6	0	CNNM4	2500	chr2:97428138:+	GBP1	14438	chr1:89530975:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	CNNM4->Oncogene{Bushman},chr2:97426639-97477628:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_4,GBP1->Oncogene{Bushman},chr1:89518002-89531043:-,guanylate_binding_protein_1	JHOS2_OVARY	1	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	DNAJC11--TTC34	6	0	DNAJC11	15303	chr1:6698355:-	TTC34	29193	chr1:2577002:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0649	0	DNAJC11->DnaJ_heat_shock_protein_family_(Hsp40)_member_C11,chr1:6694228-6761984:-,TTC34->chr1:2567415-2718286:-,tetratricopeptide_repeat_domain_34	JHOS2_OVARY	1	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	GBP1--CNNM4	5	4	GBP1	1201	chr1:89530843:-	CNNM4	18352	chr2:97462749:+	ONLY_REF_SPLICE	YES	22	21	0.29	0.3	0.0541	0.0433	GBP1->Oncogene{Bushman},chr1:89518002-89531043:-,guanylate_binding_protein_1,CNNM4->Oncogene{Bushman},chr2:97426639-97477628:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_4	JHOS2_OVARY	0.29	0.3	0.0974	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	RGS12--RBFOX3	6	0	RGS12	8553	chr4:3344780:+	RBFOX3	44493	chr17:77231887:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0649	0	RGS12->chr4:3294755-3441640:+,regulator_of_G-protein_signaling_12,RBFOX3->RNA_binding_protein,_fox-1_homolog_3,chr17:77085427-77613550:-	JHOS2_OVARY	1	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	SCAF4--KCNE1	3	10	SCAF4	15111	chr21:33060620:-	KCNE1	27861	chr21:35831034:-	ONLY_REF_SPLICE	YES	47	1	0.22	0.93	0.0325	0.1082	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,KCNE1->chr21:35818988-35884573:-,potassium_voltage-gated_channel_subfamily_E_regulatory_subunit_1	JHOS2_OVARY	0.22	0.93	0.1407	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	CALM2--PLCL1	5	0	CALM2	5840	chr2:47397873:-	PLCL1	33013	chr2:199436078:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0541	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,PLCL1->Oncogene{Bushman},chr2:198669426-199437305:+,phospholipase_C_like_1	JHOS2_OVARY	1	1	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	XPR1--RP11-522D2.1	3	2	XPR1	2319	chr1:180651547:+	RP11-522D2.1	27467	chr1:180531340:+	ONLY_REF_SPLICE	YES	78	0	0.06	1	0.0325	0.0216	LOCAL_REARRANGEMENT:+:[65486],XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,RP11-522D2.1->chr1:180528112-180535654:+	JHOS2_OVARY	0.06	1	0.0541	TRUE	0	8	0	2	8	TRUE	ACH-000132
JHOS2_OVARY	STK24--DOCK9	2	5	STK24	2906	chr13:99228249:-	DOCK9	72398	chr13:99462545:-	ONLY_REF_SPLICE	YES	24	58	0.23	0.11	0.0216	0.0541	STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24,DOCK9->chr13:99445741-99738879:-,dedicator_of_cytokinesis_9	JHOS2_OVARY	0.11	0.23	0.0757	TRUE	0	1	0	2	1	TRUE	ACH-000132
JHOS2_OVARY	MGAT5--LHFPL3	3	0	MGAT5	1309	chr2:134877862:+	LHFPL3	35469	chr7:104546634:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,LHFPL3->chr7:103969104-104549001:+,lipoma_HMGIC_fusion_partner-like_3	JHOS2_OVARY	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	BAZ2B--DCUN1D2	2	0	BAZ2B	1451	chr2:160472753:-	DCUN1D2	67972	chr13:114117206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	DCAF16--HMGB1	2	0	DCAF16	1312	chr4:17812070:-	HMGB1	15653	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	DCAF16->DDB1_and_CUL4_associated_factor_16,chr4:17802278-17812381:-,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	DUS1L--CCDC57	2	0	DUS1L	2065	chr17:80022699:-	CCDC57	49744	chr17:80059742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_REARRANGEMENT:-:[35573],DUS1L->chr17:80015382-80023763:-,dihydrouridine_synthase_1_like,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	FNDC3B--FUS	2	0	FNDC3B	6332	chr3:171851336:+	FUS	54674	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	GOLGB1--PIK3CA	2	0	GOLGB1	1124	chr3:121468479:-	PIK3CA	36820	chr3:178916538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GOLGB1->chr3:121382046-121468602:-,golgin_B1,PIK3CA->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr3:178865902-178957881:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_alpha	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	HNRNPA2B1--GNAS	2	0	HNRNPA2B1	1958	chr7:26240192:-	GNAS	30423	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	3	0	TRUE	ACH-000132
JHOS2_OVARY	KLF6--HNRNPH1	2	0	KLF6	4009	chr10:3823833:-	HNRNPH1	20894	chr5:179045324:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	KLF6->Kruppel-like_factor_6,Oncogene{Bushman},chr10:3818188-3827473:-,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	RNF213--TOP2A	2	0	RNF213	41437	chr17:78325603:+	TOP2A	101512	chr17:38546416:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,TOP2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38544768-38574202:-,topoisomerase_(DNA)_II_alpha	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	RP11-146F11.5--HSD17B7	2	0	RP11-146F11.5	1188	chr16:30597415:+	HSD17B7	12227	chr1:162769533:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	RP11-146F11.5->chr16:30597228-30619914:+,HSD17B7->chr1:162760492-162782607:+,hydroxysteroid_(17-beta)_dehydrogenase_7	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	RP11-632K20.7--DHX35	2	0	RP11-632K20.7	9146	chr15:32815230:-	DHX35	37879	chr20:37667142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	RP11-632K20.7->chr15:32812049-32829127:-,DHX35->DEAH-box_helicase_35,chr20:37590942-37668366:+	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	SPOCK2--CYHR1	2	0	SPOCK2	1893	chr10:73847898:-	CYHR1	28008	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	SPOCK2->chr10:73818793-73848790:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_2,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	TEFM--RBM39	2	0	TEFM	3117	chr17:29231084:-	RBM39	21282	chr20:34313077:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	TEFM->chr17:29224354-29233838:-,transcription_elongation_factor,_mitochondrial,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	TMEM126B--ULK4	2	0	TMEM126B	1104	chr11:85339732:+	ULK4	44416	chr3:41705190:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	TMEM126B->chr11:85339629-85347580:+,transmembrane_protein_126B,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	TMEM14A--RHOA	2	0	TMEM14A	3325	chr6:52546712:+	RHOA	12267	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	TMEM14A->chr6:52535907-52551386:+,transmembrane_protein_14A,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	TRA2B--AKIRIN2	2	0	TRA2B	5984	chr3:185649365:-	AKIRIN2	27602	chr6:88385649:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),AKIRIN2->akirin_2,chr6:88384790-88411927:-	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	USP10--COTL1	2	0	USP10	7066	chr16:84767109:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	5	0	TRUE	ACH-000132
JHOS2_OVARY	VAV2--ILF3	2	0	VAV2	2729	chr9:136804225:-	ILF3	56783	chr19:10799855:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	ZNF286A--ARL13B	2	0	ZNF286A	5099	chr17:15611561:+	ARL13B	36156	chr3:93768250:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ZNF286A->chr17:15602891-15640874:+,chr17:15603006-15648092:+,zinc_finger_protein_286A,ARL13B->ADP_ribosylation_factor_like_GTPase_13B,chr3:93698983-93774512:+	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	SCAF4--KCNE1	1	3	SCAF4	15111	chr21:33060620:-	KCNE1	30300	chr21:35821982:-	ONLY_REF_SPLICE	YES	47	4	0.08	0.5	0.0108	0.0325	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,KCNE1->chr21:35818988-35884573:-,potassium_voltage-gated_channel_subfamily_E_regulatory_subunit_1	JHOS2_OVARY	0.08	0.5	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	BCR--ABL1	1	2	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	NO	68	44	0.04	0.06	0.0108	0.0216	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	JHOS2_OVARY	0.04	0.06	0.0324	TRUE	0	2	1	16	2	TRUE	ACH-000132
JHOS2_OVARY	RP11-973F15.1--RP11-94A24.1	1	2	RP11-973F15.1	1226	chr8:123706120:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	35	0	0.08	1	0.0108	0.0216	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	JHOS2_OVARY	0.08	1	0.0324	TRUE	0	2	0	5	1	TRUE	ACH-000132
JHOS2_OVARY	DTNA--ZNF24	1	1	DTNA	1225	chr18:32073478:+	ZNF24	56869	chr18:32920697:-	ONLY_REF_SPLICE	YES	19	4	0.1	0.33	0.0108	0.0108	DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha,ZNF24->chr18:32912176-32925446:-,zinc_finger_protein_24	JHOS2_OVARY	0.1	0.33	0.0216	TRUE	0	0	0	2	0	TRUE	ACH-000132
SKNFI_AUTONOMIC_GANGLIA	PCNX--AC011625.1	147	22	PCNX	1599	chr14:71374720:+	AC011625.1	60362	chr7:132052402:+	ONLY_REF_SPLICE	YES	6	0	0.97	1	1.3029	0.195	PCNX->chr14:71374122-71582099:+,AC011625.1->chr7:132037093-132052735:+	SKNFI_AUTONOMIC_GANGLIA	0.97	1	1.4979	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	CASC9--RP11-300E4.2	14	2	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	22	0	0.42	1	0.1241	0.0177	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	SKNFI_AUTONOMIC_GANGLIA	0.42	1	0.1418	TRUE	0	23	0	19	23	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	PCNX--AC011625.1	4	22	PCNX	1599	chr14:71374720:+	AC011625.1	59218	chr7:132050683:+	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.0355	0.195	PCNX->chr14:71374122-71582099:+,AC011625.1->chr7:132037093-132052735:+	SKNFI_AUTONOMIC_GANGLIA	0.81	1	0.2305	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	PCNX--AC011625.1	3	16	PCNX	1599	chr14:71374720:+	AC011625.1	60375	chr7:132052415:+	INCL_NON_REF_SPLICE	YES	6	0	0.76	1	0.0266	0.1418	PCNX->chr14:71374122-71582099:+,AC011625.1->chr7:132037093-132052735:+	SKNFI_AUTONOMIC_GANGLIA	0.76	1	0.1684	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	LINC00693--RBMS3	4	1	LINC00693	2706	chr3:28617987:+	RBMS3	11220	chr3:29476234:+	ONLY_REF_SPLICE	YES	16	49	0.24	0.09	0.0355	0.0089	LINC00693->chr3:28616282-28799831:+,long_intergenic_non-protein_coding_RNA_693,RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+	SKNFI_AUTONOMIC_GANGLIA	0.09	0.24	0.0444	TRUE	1	0	0	2	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	ABCC5--ORC1	3	0	ABCC5	8141	chr3:183705558:-	ORC1	55361	chr1:52841271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	ABCC5->ATP_binding_cassette_subfamily_C_member_5,chr3:183637722-183735803:-,ORC1->chr1:52838501-52870131:-,origin_recognition_complex_subunit_1	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	CSTF3--ZNF207	2	0	CSTF3	5593	chr11:33163213:-	ZNF207	36731	chr17:30694791:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3,ZNF207->chr17:30677136-30708905:+,zinc_finger_protein_207	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	DUSP15--ITGA6	2	0	DUSP15	4317	chr20:30452756:-	ITGA6	22698	chr2:173338783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	DUSP15->chr20:30435440-30458550:-,dual_specificity_phosphatase_15,ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	GPS1--PTTG1IP	2	0	GPS1	2274	chr17:80009840:+	PTTG1IP	14929	chr21:46281186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	GPS1->G_protein_pathway_suppressor_1,chr17:80008567-80015346:+,PTTG1IP->Oncogene{Bushman},chr21:46269500-46293752:-,pituitary_tumor-transforming_1_interacting_protein	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	PDSS2--COG5	2	0	PDSS2	2710	chr6:107655402:-	COG5	30108	chr7:106938791:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2,COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	STMN2--GNAS	2	0	STMN2	1401	chr8:80523449:+	GNAS	27719	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	STMN2->chr8:80523049-80578410:+,stathmin_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000341
VCAP_PROSTATE	USP10--ZDHHC7	597	106	USP10	1134	chr16:84733717:+	ZDHHC7	26839	chr16:85024241:-	ONLY_REF_SPLICE	YES	0	1	1	1	4.3839	0.7784	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,ZDHHC7->Oncogene{Bushman},chr16:85007787-85045141:-,zinc_finger_DHHC-type_containing_7	VCAP_PROSTATE	1	1	5.1623	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TMPRSS2--ERG	522	3	TMPRSS2	3407	chr21:42880008:-	ERG	35606	chr21:39817544:-	ONLY_REF_SPLICE	YES	0	15	1	0.97	3.8331	0.022	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	VCAP_PROSTATE	0.97	1	3.8551	TRUE	0	117	4	2	116	TRUE	ACH-000115
VCAP_PROSTATE	PIK3C2A--TEAD1	318	70	PIK3C2A	1136	chr11:17229395:-	TEAD1	48550	chr11:12883797:+	ONLY_REF_SPLICE	YES	58	40	0.87	0.91	2.3351	0.514	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	VCAP_PROSTATE	0.87	0.91	2.8491	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	HJURP--EIF4E2	220	95	HJURP	10025	chr2:234749255:-	EIF4E2	19493	chr2:233421126:+	ONLY_REF_SPLICE	YES	120	19	0.72	0.94	1.6155	0.6976	chimerdb_pubmed{VCaP, VCaPMet},HJURP->Holliday_junction_recognition_protein,chr2:234742062-234763212:-,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	VCAP_PROSTATE	0.72	0.94	2.3131	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	VWA2--PRKCH	184	146	VWA2	2373	chr10:116008524:+	PRKCH	34092	chr14:61909829:+	ONLY_REF_SPLICE	YES	73	81	0.82	0.8	1.3511	1.0721	VWA2->chr10:115999018-116051272:+,von_Willebrand_factor_A_domain_containing_2,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	VCAP_PROSTATE	0.8	0.82	2.4232	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	LMAN2--AP3S1	131	59	LMAN2	1401	chr5:176778453:-	AP3S1	13494	chr5:115202367:+	ONLY_REF_SPLICE	YES	729	352	0.21	0.35	0.962	0.4332	chimerdb_pubmed{VCaP, VCaPMet},LMAN2->chr5:176758563-176778853:-,lectin,_mannose_binding_2,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	VCAP_PROSTATE	0.21	0.35	1.3952	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TMPRSS2--ERG	124	60	TMPRSS2	3538	chr21:42879877:-	ERG	35606	chr21:39817544:-	ONLY_REF_SPLICE	YES	122	15	0.6	0.92	0.9106	0.4406	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	VCAP_PROSTATE	0.6	0.92	1.3512	TRUE	0	117	4	2	116	TRUE	ACH-000115
VCAP_PROSTATE	C2orf42--DIRC2	108	96	C2orf42	1211	chr2:70475537:-	DIRC2	20687	chr3:122552164:+	ONLY_REF_SPLICE	YES	0	35	1	0.85	0.7931	0.7049	C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42,DIRC2->Oncogene{Bushman},chr3:122513642-122599986:+,disrupted_in_renal_carcinoma_2	VCAP_PROSTATE	0.85	1	1.498	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ZDHHC7--ABCB9	107	59	ZDHHC7	4762	chr16:85023910:-	ABCB9	23947	chr12:123444869:-	ONLY_REF_SPLICE	YES	8	87	0.95	0.66	0.7857	0.4332	ZDHHC7->Oncogene{Bushman},chr16:85007787-85045141:-,zinc_finger_DHHC-type_containing_7,ABCB9->ATP_binding_cassette_subfamily_B_member_9,chr12:123405498-123466196:-	VCAP_PROSTATE	0.66	0.95	1.2189	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	HSF1--RERE	107	49	HSF1	1277	chr8:145515556:+	RERE	18021	chr1:8716500:-	ONLY_REF_SPLICE	YES	380	114	0.29	0.58	0.7857	0.3598	HSF1->chr8:145515280-145538385:+,heat_shock_transcription_factor_1,RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-	VCAP_PROSTATE	0.29	0.58	1.1455	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RC3H2--RGS3	93	87	RC3H2	14994	chr9:125622196:-	RGS3	56208	chr9:116299076:+	ONLY_REF_SPLICE	YES	154	187	0.54	0.49	0.6829	0.6389	chimerdb_pubmed{VCaP, VCaPMet},RC3H2->chr9:125606835-125667620:-,ring_finger_and_CCCH-type_domains_2,RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3	VCAP_PROSTATE	0.49	0.54	1.3218	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ARMC6--SSX3	90	52	ARMC6	1356	chr19:19144739:+	SSX3	18996	chrX:48214704:-	ONLY_REF_SPLICE	YES	192	0	0.43	1	0.6609	0.3818	ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+,SSX3->chrX:48205863-48216142:-,synovial_sarcoma,_X_breakpoint_3	VCAP_PROSTATE	0.43	1	1.0427	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RP11-299J3.8--CNNM4	95	0	RP11-299J3.8	1044	chr3:122135097:+	CNNM4	18383	chr2:97474298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6976	0	RP11-299J3.8->chr3:122135054-122162027:+,CNNM4->Oncogene{Bushman},chr2:97426639-97477628:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_4	VCAP_PROSTATE	1	1	0.6976	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	EZH1--ABCC4	87	1	EZH1	1043	chr17:40897029:-	ABCC4	44655	chr13:95816772:-	ONLY_REF_SPLICE	YES	0	258	1	0.25	0.6389	0.0073	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,ABCC4->ATP_binding_cassette_subfamily_C_member_4,chr13:95672083-95953687:-	VCAP_PROSTATE	0.25	1	0.6462	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ADCK3--RNF187	80	14	ADCK3	10662	chr1:227128100:+	RNF187	27419	chr1:228676661:+	ONLY_REF_SPLICE	YES	13	94	0.88	0.5	0.5875	0.1028	ADCK3->aarF_domain_containing_kinase_3,chr1:227085237-227175246:+,RNF187->chr1:228674762-228683467:+,ring_finger_protein_187	VCAP_PROSTATE	0.5	0.88	0.6903	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	INPP4A--HJURP	68	46	INPP4A	28650	chr2:99193606:+	HJURP	50837	chr2:234746298:-	ONLY_REF_SPLICE	YES	48	111	0.7	0.51	0.4993	0.3378	chimerdb_pubmed{VCaP, VCaPMet},INPP4A->chr2:99061317-99210853:+,inositol_polyphosphate-4-phosphatase_type_I_A,HJURP->Holliday_junction_recognition_protein,chr2:234742062-234763212:-	VCAP_PROSTATE	0.51	0.7	0.8371	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	C16orf70--ENKD1	58	62	C16orf70	1282	chr16:67144142:+	ENKD1	20466	chr16:67700168:-	ONLY_REF_SPLICE	YES	0	136	1	0.47	0.4259	0.4553	C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,ENKD1->chr16:67696848-67701168:-,enkurin_domain_containing_1	VCAP_PROSTATE	0.47	1	0.8812	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	C16orf70--ENKD1	42	123	C16orf70	1282	chr16:67144142:+	ENKD1	19638	chr16:67700996:-	INCL_NON_REF_SPLICE	YES	0	19	1	0.9	0.3084	0.9032	C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,ENKD1->chr16:67696848-67701168:-,enkurin_domain_containing_1	VCAP_PROSTATE	0.9	1	1.2116	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PDE4D--C5orf47	60	40	PDE4D	30827	chr5:58476421:-	C5orf47	59612	chr5:173412730:+	ONLY_REF_SPLICE	YES	18	0	0.85	1	0.4406	0.2937	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,C5orf47->chr5:173400782-173433143:+,chromosome_5_open_reading_frame_47	VCAP_PROSTATE	0.85	1	0.7343	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PIK3C2A--TEAD1	34	88	PIK3C2A	2205	chr11:17225854:-	TEAD1	48550	chr11:12883797:+	ONLY_REF_SPLICE	YES	112	40	0.52	0.75	0.2497	0.6462	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	VCAP_PROSTATE	0.52	0.75	0.8959	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PDGFA--WASH2P	33	45	PDGFA	7208	chr7:550446:-	WASH2P	19852	chr2:114355063:+	ONLY_REF_SPLICE	YES	79	51	0.5	0.6	0.2423	0.3304	PDGFA->OncocartaV1_panel,Oncogene{Bushman},chr7:536895-559933:-,platelet_derived_growth_factor_subunit_A,WASH2P->WAS_protein_family_homolog_2_pseudogene,chr2:114341664-114356655:+	VCAP_PROSTATE	0.5	0.6	0.5727	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ARMC6--SSX3	28	59	ARMC6	1439	chr19:19144822:+	SSX3	18996	chrX:48214704:-	ONLY_REF_SPLICE	YES	221	0	0.28	1	0.2056	0.4332	ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+,SSX3->chrX:48205863-48216142:-,synovial_sarcoma,_X_breakpoint_3	VCAP_PROSTATE	0.28	1	0.6388	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CSNK1G3--CTC-338M12.6	27	44	CSNK1G3	9095	chr5:122924205:+	CTC-338M12.6	25826	chr5:180629588:+	ONLY_REF_SPLICE	YES	59	2	0.55	0.97	0.1983	0.3231	CSNK1G3->casein_kinase_1_gamma_3,chr5:122847793-122952739:+,CTC-338M12.6->chr5:180622496-180630103:+	VCAP_PROSTATE	0.55	0.97	0.5214	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PDE4D--FAM172A	28	35	PDE4D	19661	chr5:59064073:-	FAM172A	72510	chr5:92956835:-	ONLY_REF_SPLICE	YES	35	7	0.64	0.9	0.2056	0.257	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	VCAP_PROSTATE	0.64	0.9	0.4626	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TMPRSS2--ERG	36	3	TMPRSS2	3407	chr21:42880008:-	ERG	31121	chr21:39846044:-	ONLY_REF_SPLICE	YES	0	7	1	0.85	0.2644	0.022	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	VCAP_PROSTATE	0.85	1	0.2864	TRUE	0	61	2	1	61	TRUE	ACH-000115
VCAP_PROSTATE	NDUFAF2--MAST4	28	32	NDUFAF2	1254	chr5:60241209:+	MAST4	15109	chr5:66084498:+	ONLY_REF_SPLICE	YES	253	5	0.19	0.92	0.2056	0.235	NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+,MAST4->chr5:65892176-66465423:+,microtubule_associated_serine/threonine_kinase_family_member_4	VCAP_PROSTATE	0.19	0.92	0.4406	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CSNK1G3--CTC-338M12.6	22	48	CSNK1G3	9095	chr5:122924205:+	CTC-338M12.6	24334	chr5:180627913:+	ONLY_REF_SPLICE	YES	59	0	0.54	1	0.1615	0.3525	CSNK1G3->casein_kinase_1_gamma_3,chr5:122847793-122952739:+,CTC-338M12.6->chr5:180622496-180630103:+	VCAP_PROSTATE	0.54	1	0.514	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RC3H2--RGS3	10	90	RC3H2	15872	chr9:125621318:-	RGS3	56208	chr9:116299076:+	INCL_NON_REF_SPLICE	YES	160	187	0.38	0.35	0.0734	0.6609	chimerdb_pubmed{VCaP, VCaPMet},RC3H2->chr9:125606835-125667620:-,ring_finger_and_CCCH-type_domains_2,RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3	VCAP_PROSTATE	0.35	0.38	0.7343	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PSMG1--UNK	26	23	PSMG1	6794	chr21:40549361:-	UNK	14759	chr17:73789524:+	ONLY_REF_SPLICE	YES	101	131	0.33	0.27	0.1909	0.1689	PSMG1->chr21:40546695-40555777:-,proteasome_assembly_chaperone_1,UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger	VCAP_PROSTATE	0.27	0.33	0.3598	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	VWA2--PRKCH	1	116	VWA2	1311	chr10:115999328:+	PRKCH	34092	chr14:61909829:+	ONLY_REF_SPLICE	YES	97	81	0.55	0.59	0.0073	0.8518	VWA2->chr10:115999018-116051272:+,von_Willebrand_factor_A_domain_containing_2,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	VCAP_PROSTATE	0.55	0.59	0.8591	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	USP10--ZDHHC7	2	111	USP10	2255	chr16:84738466:+	ZDHHC7	26839	chr16:85024241:-	ONLY_REF_SPLICE	YES	1	1	0.99	0.99	0.0147	0.8151	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,ZDHHC7->Oncogene{Bushman},chr16:85007787-85045141:-,zinc_finger_DHHC-type_containing_7	VCAP_PROSTATE	0.99	0.99	0.8298	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PIK3C2A--TEAD1	10	69	PIK3C2A	1136	chr11:17229395:-	TEAD1	48554	chr11:12883801:+	INCL_NON_REF_SPLICE	YES	58	40	0.58	0.66	0.0734	0.5067	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	VCAP_PROSTATE	0.58	0.66	0.5801	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ARMC6--SSX3	9	63	ARMC6	1664	chr19:19145047:+	SSX3	18996	chrX:48214704:-	ONLY_REF_SPLICE	YES	234	0	0.24	1	0.0661	0.4626	ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+,SSX3->chrX:48205863-48216142:-,synovial_sarcoma,_X_breakpoint_3	VCAP_PROSTATE	0.24	1	0.5287	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	JMY--DMGDH	21	13	JMY	3668	chr5:78573906:+	DMGDH	37279	chr5:78329231:-	ONLY_REF_SPLICE	YES	21	0	0.62	1	0.1542	0.0955	LOCAL_INVERSION:+:-:[151],JMY->chr5:78532012-78623038:+,junction_mediating_and_regulatory_protein,_p53_cofactor,DMGDH->chr5:78293438-78531861:-,dimethylglycine_dehydrogenase	VCAP_PROSTATE	0.62	1	0.2497	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RANBP17--DOCK2	19	21	RANBP17	42989	chr5:170720985:+	DOCK2	77555	chr5:169267761:+	ONLY_REF_SPLICE	YES	4	0	0.91	1	0.1395	0.1542	RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+,DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2	VCAP_PROSTATE	0.91	1	0.2937	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TMPRSS2--ERG	7	65	TMPRSS2	3538	chr21:42879877:-	ERG	31121	chr21:39846044:-	ONLY_REF_SPLICE	YES	122	7	0.37	0.91	0.0514	0.4773	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	VCAP_PROSTATE	0.37	0.91	0.5287	TRUE	0	61	2	1	61	TRUE	ACH-000115
VCAP_PROSTATE	TTC6--MIPOL1	19	16	TTC6	2242	chr14:38075947:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	117	23	0.23	0.6	0.1395	0.1175	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	VCAP_PROSTATE	0.23	0.6	0.257	TRUE	0	3	0	4	3	TRUE	ACH-000115
VCAP_PROSTATE	PDE4D--FAM172A	19	12	PDE4D	13468	chr5:59284315:-	FAM172A	72510	chr5:92956835:-	ONLY_REF_SPLICE	YES	29	7	0.52	0.82	0.1395	0.0881	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	VCAP_PROSTATE	0.52	0.82	0.2276	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ARMC6--SSX3	4	64	ARMC6	2820	chr19:19148516:+	SSX3	18996	chrX:48214704:-	ONLY_REF_SPLICE	YES	240	0	0.22	1	0.0294	0.47	ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+,SSX3->chrX:48205863-48216142:-,synovial_sarcoma,_X_breakpoint_3	VCAP_PROSTATE	0.22	1	0.4994	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ZNF57--DKFZP761J1410	15	16	ZNF57	1151	chr19:2901046:+	DKFZP761J1410	13623	chr19:11470283:+	ONLY_REF_SPLICE	YES	1	161	0.97	0.16	0.1101	0.1175	ZNF57->chr19:2900896-2918474:+,zinc_finger_protein_57,DKFZP761J1410->chr19:11466062-11476374:+	VCAP_PROSTATE	0.16	0.97	0.2276	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CNOT6--S100Z	14	18	CNOT6	5731	chr5:179980471:+	S100Z	23187	chr5:76171129:+	ONLY_REF_SPLICE	YES	422	15	0.07	0.68	0.1028	0.1322	CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+,S100Z->S100_calcium_binding_protein_Z,chr5:76145826-76217475:+	VCAP_PROSTATE	0.07	0.68	0.235	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	NDUFAF2--MAST4	10	32	NDUFAF2	1300	chr5:60241255:+	MAST4	15109	chr5:66084498:+	ONLY_REF_SPLICE	YES	254	5	0.14	0.89	0.0734	0.235	NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+,MAST4->chr5:65892176-66465423:+,microtubule_associated_serine/threonine_kinase_family_member_4	VCAP_PROSTATE	0.14	0.89	0.3084	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TMPRSS2--ERG	2	63	TMPRSS2	4698	chr21:42878372:-	ERG	35606	chr21:39817544:-	ONLY_REF_SPLICE	NO	131	15	0.33	0.81	0.0147	0.4626	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	VCAP_PROSTATE	0.33	0.81	0.4773	TRUE	0	56	0	1	56	TRUE	ACH-000115
VCAP_PROSTATE	CNOT6--S100Z	9	34	CNOT6	5731	chr5:179980471:+	S100Z	20893	chr5:76145806:+	INCL_NON_REF_SPLICE	YES	422	0	0.09	1	0.0661	0.2497	CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+,S100Z->S100_calcium_binding_protein_Z,chr5:76145826-76217475:+	VCAP_PROSTATE	0.09	1	0.3158	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RP5-1021I20.4--AC025918.2	16	0	RP5-1021I20.4	22554	chr14:74390225:+	AC025918.2	28608	chr15:59186176:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1175	0	RP5-1021I20.4->chr14:74318674-74398981:+,AC025918.2->chr15:59182166-59186281:+	VCAP_PROSTATE	1	1	0.1175	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	HSF1--RERE	3	51	HSF1	2983	chr8:145517262:+	RERE	18021	chr1:8716500:-	ONLY_REF_SPLICE	NO	387	114	0.12	0.32	0.022	0.3745	HSF1->chr8:145515280-145538385:+,heat_shock_transcription_factor_1,RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-	VCAP_PROSTATE	0.12	0.32	0.3965	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	USP10--ABCB9	6	39	USP10	1134	chr16:84733717:+	ABCB9	31191	chr12:123444869:-	ONLY_REF_SPLICE	YES	0	87	1	0.34	0.0441	0.2864	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,ABCB9->ATP_binding_cassette_subfamily_B_member_9,chr12:123405498-123466196:-	VCAP_PROSTATE	0.34	1	0.3305	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ZNF57--DKFZP761J1410	10	19	ZNF57	1151	chr19:2901046:+	DKFZP761J1410	13548	chr19:11470208:+	ONLY_REF_SPLICE	YES	1	160	0.97	0.15	0.0734	0.1395	ZNF57->chr19:2900896-2918474:+,zinc_finger_protein_57,DKFZP761J1410->chr19:11466062-11476374:+	VCAP_PROSTATE	0.15	0.97	0.2129	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	VWA2--PRKCH	1	52	VWA2	2373	chr10:116008524:+	PRKCH	35243	chr14:61912410:+	ONLY_REF_SPLICE	YES	73	147	0.42	0.27	0.0073	0.3818	VWA2->chr10:115999018-116051272:+,von_Willebrand_factor_A_domain_containing_2,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	VCAP_PROSTATE	0.27	0.42	0.3891	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	C2orf42--DIRC2	4	38	C2orf42	1211	chr2:70475537:-	DIRC2	21817	chr3:122564610:+	ONLY_REF_SPLICE	YES	0	67	1	0.39	0.0294	0.279	C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42,DIRC2->Oncogene{Bushman},chr3:122513642-122599986:+,disrupted_in_renal_carcinoma_2	VCAP_PROSTATE	0.39	1	0.3084	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	HSF1--RERE	1	49	HSF1	2022	chr8:145516301:+	RERE	18021	chr1:8716500:-	ONLY_REF_SPLICE	YES	392	114	0.11	0.3	0.0073	0.3598	HSF1->chr8:145515280-145538385:+,heat_shock_transcription_factor_1,RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-	VCAP_PROSTATE	0.11	0.3	0.3671	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PIK3C2A--TEAD1	2	45	PIK3C2A	1136	chr11:17229395:-	TEAD1	49615	chr11:12886233:+	ONLY_REF_SPLICE	YES	58	57	0.45	0.45	0.0147	0.3304	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	VCAP_PROSTATE	0.45	0.45	0.3451	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ADCK3--RNF187	5	32	ADCK3	10662	chr1:227128100:+	RNF187	25461	chr1:228674703:+	INCL_NON_REF_SPLICE	YES	13	0	0.74	1	0.0367	0.235	ADCK3->aarF_domain_containing_kinase_3,chr1:227085237-227175246:+,RNF187->chr1:228674762-228683467:+,ring_finger_protein_187	VCAP_PROSTATE	0.74	1	0.2717	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PIK3C2A--TEAD1	3	40	PIK3C2A	1136	chr11:17229395:-	TEAD1	49767	chr11:12886385:+	ONLY_REF_SPLICE	YES	58	83	0.43	0.34	0.022	0.2937	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	VCAP_PROSTATE	0.34	0.43	0.3157	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CNNM4--PARD3B	11	7	CNNM4	8220	chr2:97474479:+	PARD3B	18014	chr2:205829875:+	ONLY_REF_SPLICE	YES	109	3	0.14	0.86	0.0808	0.0514	CNNM4->Oncogene{Bushman},chr2:97426639-97477628:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_4,PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta	VCAP_PROSTATE	0.14	0.86	0.1322	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PSMG1--UNK	5	29	PSMG1	6794	chr21:40549361:-	UNK	13629	chr17:73788394:+	ONLY_REF_SPLICE	YES	101	162	0.25	0.17	0.0367	0.213	PSMG1->chr21:40546695-40555777:-,proteasome_assembly_chaperone_1,UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger	VCAP_PROSTATE	0.17	0.25	0.2497	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CSNK1G3--CTC-338M12.6	1	44	CSNK1G3	9095	chr5:122924205:+	CTC-338M12.6	25438	chr5:180629200:+	ONLY_REF_SPLICE	YES	59	1	0.43	0.98	0.0073	0.3231	CSNK1G3->casein_kinase_1_gamma_3,chr5:122847793-122952739:+,CTC-338M12.6->chr5:180622496-180630103:+	VCAP_PROSTATE	0.43	0.98	0.3304	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	NDUFAF2--CTC-458G6.4	11	4	NDUFAF2	5683	chr5:60394859:+	CTC-458G6.4	10079	chr5:92162034:+	INCL_NON_REF_SPLICE	YES	176	0	0.08	1	0.0808	0.0294	NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+,CTC-458G6.4->chr5:92161962-92179711:+	VCAP_PROSTATE	0.08	1	0.1102	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PDE4D--FAM172A	3	36	PDE4D	20832	chr5:58882155:-	FAM172A	72510	chr5:92956835:-	ONLY_REF_SPLICE	YES	40	7	0.49	0.85	0.022	0.2644	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	VCAP_PROSTATE	0.49	0.85	0.2864	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RC3H2--RGS3	6	20	RC3H2	13779	chr9:125627628:-	RGS3	56208	chr9:116299076:+	ONLY_REF_SPLICE	YES	173	187	0.13	0.12	0.0441	0.1469	chimerdb_pubmed{VCaP, VCaPMet},RC3H2->chr9:125606835-125667620:-,ring_finger_and_CCCH-type_domains_2,RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3	VCAP_PROSTATE	0.12	0.13	0.191	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CSNK1G3--CTC-338M12.6	3	28	CSNK1G3	8737	chr5:122923847:+	CTC-338M12.6	25826	chr5:180629588:+	ONLY_REF_SPLICE	YES	87	2	0.26	0.94	0.022	0.2056	CSNK1G3->casein_kinase_1_gamma_3,chr5:122847793-122952739:+,CTC-338M12.6->chr5:180622496-180630103:+	VCAP_PROSTATE	0.26	0.94	0.2276	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	SLMAP--ANO10	6	14	SLMAP	7721	chr3:57835543:+	ANO10	44181	chr3:43679275:-	ONLY_REF_SPLICE	YES	77	3	0.21	0.87	0.0441	0.1028	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,ANO10->anoctamin_10,chr3:43396351-43733086:-	VCAP_PROSTATE	0.21	0.87	0.1469	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ARHGAP23--F13A1	8	5	ARHGAP23	16504	chr17:36638919:+	F13A1	36351	chr6:6251162:-	ONLY_REF_SPLICE	YES	2	2	0.87	0.87	0.0587	0.0367	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,F13A1->chr6:6144318-6321246:-,coagulation_factor_XIII_A_chain	VCAP_PROSTATE	0.87	0.87	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PIK3C2A--TEAD1	1	32	PIK3C2A	1136	chr11:17229395:-	TEAD1	52288	chr11:12901255:+	ONLY_REF_SPLICE	YES	58	114	0.36	0.22	0.0073	0.235	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	VCAP_PROSTATE	0.22	0.36	0.2423	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TTC6--MIPOL1	6	8	TTC6	1162	chr14:38065213:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	85	23	0.14	0.38	0.0441	0.0587	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	VCAP_PROSTATE	0.14	0.38	0.1028	TRUE	0	3	0	4	2	TRUE	ACH-000115
VCAP_PROSTATE	NREP--DOCK2	6	7	NREP	6917	chr5:111091467:-	DOCK2	71471	chr5:169477260:+	ONLY_REF_SPLICE	YES	49	14	0.21	0.48	0.0441	0.0514	NREP->chr5:110998318-111333161:-,neuronal_regeneration_related_protein,DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2	VCAP_PROSTATE	0.21	0.48	0.0955	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	DCDC2--ELOVL2-AS1	7	2	DCDC2	2650	chr6:24353797:-	ELOVL2-AS1	23103	chr6:11077922:+	ONLY_REF_SPLICE	YES	62	3	0.13	0.75	0.0514	0.0147	DCDC2->chr6:24171984-24358280:-,doublecortin_domain_containing_2,ELOVL2-AS1->ELOVL2_antisense_RNA_1,chr6:11043757-11078459:+	VCAP_PROSTATE	0.13	0.75	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	JMY--DMGDH	5	7	JMY	3668	chr5:78573906:+	DMGDH	37847	chr5:78328663:-	ONLY_REF_SPLICE	YES	21	3	0.36	0.8	0.0367	0.0514	LOCAL_INVERSION:+:-:[151],JMY->chr5:78532012-78623038:+,junction_mediating_and_regulatory_protein,_p53_cofactor,DMGDH->chr5:78293438-78531861:-,dimethylglycine_dehydrogenase	VCAP_PROSTATE	0.36	0.8	0.0881	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	JMY--DMGDH	4	10	JMY	3668	chr5:78573906:+	DMGDH	37362	chr5:78329148:-	INCL_NON_REF_SPLICE	YES	21	0	0.4	1	0.0294	0.0734	LOCAL_INVERSION:+:-:[151],JMY->chr5:78532012-78623038:+,junction_mediating_and_regulatory_protein,_p53_cofactor,DMGDH->chr5:78293438-78531861:-,dimethylglycine_dehydrogenase	VCAP_PROSTATE	0.4	1	0.1028	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TTC6--MIPOL1	4	10	TTC6	2242	chr14:38075947:+	MIPOL1	77335	chr14:37892060:+	ONLY_REF_SPLICE	YES	117	33	0.11	0.3	0.0294	0.0734	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	VCAP_PROSTATE	0.11	0.3	0.1028	TRUE	0	4	0	4	2	TRUE	ACH-000115
VCAP_PROSTATE	CNOT6--S100Z	1	21	CNOT6	5731	chr5:179980471:+	S100Z	22068	chr5:76165991:+	ONLY_REF_SPLICE	YES	422	0	0.05	1	0.0073	0.1542	CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+,S100Z->S100_calcium_binding_protein_Z,chr5:76145826-76217475:+	VCAP_PROSTATE	0.05	1	0.1615	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TMPRSS2--ERG	1	21	TMPRSS2	3538	chr21:42879877:-	ERG	36824	chr21:39795483:-	ONLY_REF_SPLICE	YES	122	1230	0.15	0.02	0.0073	0.1542	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	VCAP_PROSTATE	0.02	0.15	0.1615	TRUE	0	59	1	1	24	TRUE	ACH-000115
VCAP_PROSTATE	RP11-214N9.1--ATP6V1C2	5	4	RP11-214N9.1	1694	chr2:9696721:+	ATP6V1C2	8184	chr2:10894107:+	INCL_NON_REF_SPLICE	YES	1	8	0.9	0.53	0.0367	0.0294	RP11-214N9.1->chr2:9696028-9696904:+,ATP6V1C2->ATPase_H+_transporting_V1_subunit_C2,chr2:10861775-10925236:+	VCAP_PROSTATE	0.53	0.9	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	SLMAP--ANO10	1	19	SLMAP	7721	chr3:57835543:+	ANO10	42881	chr3:43680575:-	ONLY_REF_SPLICE	YES	77	0	0.21	1	0.0073	0.1395	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,ANO10->anoctamin_10,chr3:43396351-43733086:-	VCAP_PROSTATE	0.21	1	0.1468	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	MAN2A1--ANKRD31	5	2	MAN2A1	5759	chr5:109065214:+	ANKRD31	38855	chr5:74526460:-	ONLY_REF_SPLICE	YES	19	0	0.27	1	0.0367	0.0147	MAN2A1->chr5:109025067-109205326:+,mannosidase_alpha_class_2A_member_1,ANKRD31->ankyrin_repeat_domain_31,chr5:74364100-74532703:-	VCAP_PROSTATE	0.27	1	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	EBF1--GPR98	3	9	EBF1	3067	chr5:158523982:-	GPR98	124033	chr5:90261232:+	ONLY_REF_SPLICE	YES	4	18	0.75	0.4	0.022	0.0661	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,GPR98->chr5:89825161-90460038:+	VCAP_PROSTATE	0.4	0.75	0.0881	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	NDUFAF2--MAST4	3	8	NDUFAF2	1254	chr5:60241209:+	MAST4	19772	chr5:66195779:+	ONLY_REF_SPLICE	YES	253	2	0.04	0.85	0.022	0.0587	NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+,MAST4->chr5:65892176-66465423:+,microtubule_associated_serine/threonine_kinase_family_member_4	VCAP_PROSTATE	0.04	0.85	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RASA1--PPIP5K2	3	8	RASA1	2103	chr5:86564807:+	PPIP5K2	66849	chr5:102537223:+	ONLY_REF_SPLICE	YES	62	77	0.15	0.12	0.022	0.0587	RASA1->Oncogene{Bushman},RAS_p21_protein_activator_1,chr5:86563705-86687748:+,PPIP5K2->chr5:102455853-102548500:+,diphosphoinositol_pentakisphosphate_kinase_2	VCAP_PROSTATE	0.12	0.15	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	C2orf42--DIRC2	1	15	C2orf42	1211	chr2:70475537:-	DIRC2	22926	chr3:122575154:+	ONLY_REF_SPLICE	NO	0	84	1	0.16	0.0073	0.1101	C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42,DIRC2->Oncogene{Bushman},chr3:122513642-122599986:+,disrupted_in_renal_carcinoma_2	VCAP_PROSTATE	0.16	1	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	EBF1--RP11-373N22.3	4	2	EBF1	3698	chr5:158523351:-	RP11-373N22.3	29110	chr5:147670558:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0294	0.0147	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,RP11-373N22.3->chr5:147647870-147763346:-	VCAP_PROSTATE	0.5	1	0.0441	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	EBF2--PLXNC1	3	6	EBF2	5962	chr8:25890601:-	PLXNC1	53538	chr12:94688262:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0.0441	EBF2->chr8:25699246-25902913:-,early_B-cell_factor_2,PLXNC1->chr12:94542499-94701451:+,plexin_C1	VCAP_PROSTATE	1	1	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PDE4D--FAM172A	1	12	PDE4D	18262	chr5:59092886:-	FAM172A	72510	chr5:92956835:-	ONLY_REF_SPLICE	YES	7	7	0.65	0.65	0.0073	0.0881	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	VCAP_PROSTATE	0.65	0.65	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PPIP5K2--CTC-340A15.2	3	4	PPIP5K2	3088	chr5:102465407:+	CTC-340A15.2	77019	chr5:164598384:+	ONLY_REF_SPLICE	YES	59	1	0.11	0.88	0.022	0.0294	PPIP5K2->chr5:102455853-102548500:+,diphosphoinositol_pentakisphosphate_kinase_2,CTC-340A15.2->chr5:163723702-164598649:+	VCAP_PROSTATE	0.11	0.88	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PDE4D--C5orf47	2	6	PDE4D	30827	chr5:58476421:-	C5orf47	62166	chr5:173425156:+	ONLY_REF_SPLICE	YES	18	0	0.31	1	0.0147	0.0441	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,C5orf47->chr5:173400782-173433143:+,chromosome_5_open_reading_frame_47	VCAP_PROSTATE	0.31	1	0.0588	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ZNF57--DKFZP761J1410	2	6	ZNF57	1151	chr19:2901046:+	DKFZP761J1410	14973	chr19:11471893:+	ONLY_REF_SPLICE	YES	1	120	0.89	0.06	0.0147	0.0441	ZNF57->chr19:2900896-2918474:+,zinc_finger_protein_57,DKFZP761J1410->chr19:11466062-11476374:+	VCAP_PROSTATE	0.06	0.89	0.0588	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	EBF1--GPR98	1	9	EBF1	3698	chr5:158523351:-	GPR98	124033	chr5:90261232:+	ONLY_REF_SPLICE	YES	6	18	0.62	0.36	0.0073	0.0661	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,GPR98->chr5:89825161-90460038:+	VCAP_PROSTATE	0.36	0.62	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ZBTB20--LSAMP	3	1	ZBTB20	19209	chr3:114412375:-	LSAMP	49993	chr3:115805403:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.022	0.0073	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	VCAP_PROSTATE	0.5	1	0.0293	TRUE	0	1	0	1	1	TRUE	ACH-000115
VCAP_PROSTATE	BRMS1--SREBF1	3	0	BRMS1	5704	chr11:66106210:-	SREBF1	15655	chr17:17721020:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.022	0	BRMS1->Oncogene{Bushman},breast_cancer_metastasis_suppressor_1,chr11:66104804-66112596:-,SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1	VCAP_PROSTATE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	C16orf70--ENKD1	2	4	C16orf70	1282	chr16:67144142:+	ENKD1	23175	chr16:67697459:-	ONLY_REF_SPLICE	YES	0	144	1	0.04	0.0147	0.0294	C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,ENKD1->chr16:67696848-67701168:-,enkurin_domain_containing_1	VCAP_PROSTATE	0.04	1	0.0441	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	NUFIP2--MPI	3	0	NUFIP2	2387	chr17:27614684:-	MPI	20903	chr15:75185479:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.022	0	NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2,MPI->chr15:75182346-75191798:+,mannose_phosphate_isomerase	VCAP_PROSTATE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PDIA4--PPIA	3	0	PDIA4	6431	chr7:148709341:-	PPIA	15239	chr7:44836309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.022	0	PDIA4->chr7:148700154-148725733:-,protein_disulfide_isomerase_family_A_member_4,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	VCAP_PROSTATE	1	1	0.022	TRUE	0	0	0	2	0	TRUE	ACH-000115
VCAP_PROSTATE	PDE4D--C5orf47	2	2	PDE4D	30827	chr5:58476421:-	C5orf47	64352	chr5:173428199:+	ONLY_REF_SPLICE	YES	18	2	0.18	0.67	0.0147	0.0147	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,C5orf47->chr5:173400782-173433143:+,chromosome_5_open_reading_frame_47	VCAP_PROSTATE	0.18	0.67	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ZNF57--DKFZP761J1410	2	2	ZNF57	1151	chr19:2901046:+	DKFZP761J1410	17422	chr19:11474389:+	ONLY_REF_SPLICE	YES	1	95	0.8	0.04	0.0147	0.0147	ZNF57->chr19:2900896-2918474:+,zinc_finger_protein_57,DKFZP761J1410->chr19:11466062-11476374:+	VCAP_PROSTATE	0.04	0.8	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ANO10--SLMAP	2	1	ANO10	1078	chr3:43733009:-	SLMAP	39608	chr3:57843460:+	ONLY_REF_SPLICE	YES	0	79	1	0.04	0.0147	0.0073	ANO10->anoctamin_10,chr3:43396351-43733086:-,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	VCAP_PROSTATE	0.04	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	AAK1--AGAP1-IT1	2	0	AAK1	6979	chr2:69769655:-	AGAP1-IT1	40771	chr2:236415597:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,AGAP1-IT1->AGAP1_intronic_transcript_1,chr2:236414395-236416210:+	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ARHGAP26--RP11-155G15.2	2	0	ARHGAP26	18023	chr5:142311690:+	RP11-155G15.2	49198	chr5:96767448:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,RP11-155G15.2->chr5:96519303-96772921:+	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ATXN7L1--NEDD4L	2	0	ATXN7L1	1793	chr7:105516258:-	NEDD4L	58342	chr18:56008270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	ATXN7L1->ataxin_7_like_1,chr7:105245514-105517050:-,NEDD4L->chr18:55711599-56068772:+,neural_precursor_cell_expressed,_developmentally_down-regulated_4-like,_E3_ubiquitin_protein_ligase	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	BSG--SET	2	0	BSG	2405	chr19:572701:+	SET	18125	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CTD-2001C12.1--GNAS	2	0	CTD-2001C12.1	1102	chr5:99870865:-	GNAS	26550	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	CTD-2001C12.1->chr5:99785458-99870966:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	GEMIN4--ABR	2	0	GEMIN4	2685	chr17:655373:-	ABR	25250	chr17:1003975:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	GEMIN4->chr17:647654-657239:-,gem_nuclear_organelle_associated_protein_4,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	VCAP_PROSTATE	1	1	0.0147	TRUE	1	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	HP1BP3--AMACR	2	0	HP1BP3	1129	chr1:21113688:-	AMACR	23620	chr5:34006004:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,AMACR->alpha-methylacyl-CoA_racemase,chr5:33986283-34008220:-	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	MTERFD1--ERAP2	2	0	MTERFD1	1110	chr8:97273729:-	ERAP2	33450	chr5:96251392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	MTERFD1->chr8:97251626-97273838:-,ERAP2->chr5:96211643-96255420:+,endoplasmic_reticulum_aminopeptidase_2	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	NFE2L1--FOLH1B	2	0	NFE2L1	8029	chr17:46134864:+	FOLH1B	18030	chr11:89385664:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,FOLH1B->chr11:89371683-89431886:+,folate_hydrolase_1B	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PPP2R1A--ZNF577	2	0	PPP2R1A	1136	chr19:52693427:+	ZNF577	24217	chr19:52384130:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	PPP2R1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:52693292-52730687:+,protein_phosphatase_2_regulatory_subunit_A,_alpha,ZNF577->chr19:52359055-52394203:-,zinc_finger_protein_577	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RCN2--SETX	2	0	RCN2	3045	chr15:77228063:+	SETX	16623	chr9:135224822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	RCN2->chr15:77223960-77242601:+,reticulocalbin_2,SETX->chr9:135136743-135230372:-,senataxin	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	VCAP_PROSTATE	1	1	0.0147	TRUE	0	1	0	17	0	TRUE	ACH-000115
VCAP_PROSTATE	EBF1--GPR98	1	3	EBF1	1417	chr5:158526353:-	GPR98	124033	chr5:90261232:+	ONLY_REF_SPLICE	NO	14	18	0.22	0.18	0.0073	0.022	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,GPR98->chr5:89825161-90460038:+	VCAP_PROSTATE	0.18	0.22	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TTC6--MIPOL1	1	3	TTC6	2242	chr14:38075947:+	MIPOL1	90133	chr14:38016110:+	ONLY_REF_SPLICE	YES	117	54	0.03	0.07	0.0073	0.022	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	VCAP_PROSTATE	0.03	0.07	0.0293	TRUE	0	9	0	2	8	TRUE	ACH-000115
VCAP_PROSTATE	EBF1--GPR98	1	1	EBF1	3698	chr5:158523351:-	GPR98	126329	chr5:90368264:+	ONLY_REF_SPLICE	NO	6	27	0.25	0.07	0.0073	0.0073	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,GPR98->chr5:89825161-90460038:+	VCAP_PROSTATE	0.07	0.25	0.0146	TRUE	0	0	0	1	0	TRUE	ACH-000115
CAL851_BREAST	NUP153--PXMP4	154	30	NUP153	1149	chr6:17706508:-	PXMP4	28105	chr20:32302542:-	ONLY_REF_SPLICE	YES	31	31	0.86	0.86	1.3315	0.2594	NUP153->chr6:17615269-17706656:-,nucleoporin_153kDa,PXMP4->chr20:32294512-32308125:-,peroxisomal_membrane_protein_4	CAL851_BREAST	0.86	0.86	1.5909	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	C17orf70--NPLOC4	108	31	C17orf70	2796	chr17:79519192:-	NPLOC4	44018	chr17:79526442:-	ONLY_REF_SPLICE	YES	18	143	0.89	0.49	0.9338	0.268	LOCAL_REARRANGEMENT:-:[2926],C17orf70->chr17:79506911-79520987:-,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	CAL851_BREAST	0.49	0.89	1.2018	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	AFG3L1P--MC1R	69	31	AFG3L1P	1180	chr16:90039173:+	MC1R	28390	chr16:89984284:+	ONLY_REF_SPLICE	YES	24	2	0.81	0.98	0.5966	0.268	LOCAL_REARRANGEMENT:+:[51609],AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+,MC1R->chr16:89978527-89987385:+,melanocortin_1_receptor	CAL851_BREAST	0.81	0.98	0.8646	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	KATNB1--NLRC5	23	7	KATNB1	3685	chr16:57775729:+	NLRC5	54908	chr16:57101648:+	ONLY_REF_SPLICE	YES	13	7	0.7	0.81	0.1989	0.0605	KATNB1->chr16:57769642-57791162:+,katanin_regulatory_subunit_B1,NLRC5->NLR_family,_CARD_domain_containing_5,chr16:57023397-57117443:+	CAL851_BREAST	0.7	0.81	0.2594	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	C17orf70--NPLOC4	9	24	C17orf70	2768	chr17:79519220:-	NPLOC4	44018	chr17:79526442:-	INCL_NON_REF_SPLICE	YES	15	143	0.69	0.19	0.0778	0.2075	LOCAL_REARRANGEMENT:-:[2926],C17orf70->chr17:79506911-79520987:-,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	CAL851_BREAST	0.19	0.69	0.2853	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	C17orf70--NPLOC4	14	0	C17orf70	1888	chr17:79520100:-	NPLOC4	44018	chr17:79526442:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.121	0	LOCAL_REARRANGEMENT:-:[2926],C17orf70->chr17:79506911-79520987:-,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	CAL851_BREAST	1	1	0.121	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	CCDC91--AP005135.2	6	4	CCDC91	21147	chr12:28544344:+	AP005135.2	37363	chr11:134931841:-	ONLY_REF_SPLICE	YES	37	0	0.21	1	0.0519	0.0346	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,AP005135.2->chr11:134931675-134945793:-	CAL851_BREAST	0.21	1	0.0865	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	NUP153--E2F1	7	0	NUP153	1149	chr6:17706508:-	E2F1	28281	chr20:32268222:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0605	0	NUP153->chr6:17615269-17706656:-,nucleoporin_153kDa,E2F1->E2F_transcription_factor_1,Oncogene{Bushman},chr20:32263489-32274210:-	CAL851_BREAST	1	1	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	MYH9--RP5-921G16.1	5	4	MYH9	1212	chr22:36783852:-	RP5-921G16.1	47900	chr7:123992870:+	ONLY_REF_SPLICE	YES	223	2	0.04	0.82	0.0432	0.0346	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,RP5-921G16.1->chr7:123672259-124035172:+	CAL851_BREAST	0.04	0.82	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	FBXL20--GSDMB	5	3	FBXL20	3225	chr17:37499433:-	GSDMB	25304	chr17:38073574:-	ONLY_REF_SPLICE	YES	6	10	0.57	0.44	0.0432	0.0259	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	CAL851_BREAST	0.44	0.57	0.0691	TRUE	0	1	0	1	1	TRUE	ACH-000857
CAL851_BREAST	CYP39A1--FAM83B	5	1	CYP39A1	7044	chr6:46598700:-	FAM83B	24118	chr6:54804504:+	ONLY_REF_SPLICE	YES	18	21	0.25	0.22	0.0432	0.0086	CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1,FAM83B->chr6:54711569-54806820:+,family_with_sequence_similarity_83_member_B	CAL851_BREAST	0.22	0.25	0.0518	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	CCDC91--AP005135.2	2	4	CCDC91	22332	chr12:28565871:+	AP005135.2	37363	chr11:134931841:-	ONLY_REF_SPLICE	YES	40	0	0.13	1	0.0173	0.0346	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,AP005135.2->chr11:134931675-134945793:-	CAL851_BREAST	0.13	1	0.0519	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	FBXL20--GSDMB	2	3	FBXL20	3225	chr17:37499433:-	GSDMB	25295	chr17:38073583:-	ONLY_REF_SPLICE	NO	6	9	0.45	0.36	0.0173	0.0259	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	CAL851_BREAST	0.36	0.45	0.0432	TRUE	0	1	0	1	1	TRUE	ACH-000857
CAL851_BREAST	AGRN--DVL1	2	0	AGRN	11949	chr1:982337:+	DVL1	29506	chr1:1274033:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	AGRN->agrin,chr1:955503-991496:+,DVL1->chr1:1270656-1284730:-,dishevelled_segment_polarity_protein_1	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	ANKRD29--RP11-520D19.2	2	0	ANKRD29	6609	chr18:21218813:-	RP11-520D19.2	21557	chr3:81337375:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	ANKRD29->ankyrin_repeat_domain_29,chr18:21178890-21242849:-,RP11-520D19.2->chr3:81295730-81346496:-	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	CBX1--CCT3	2	0	CBX1	1254	chr17:46178630:-	CCT3	18715	chr1:156303434:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CBX1->chr17:46147414-46178883:-,chromobox_1,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	CREG1--MRPL24	2	0	CREG1	1380	chr1:167522625:-	MRPL24	14227	chr1:156708230:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CREG1->cellular_repressor_of_E1A_stimulated_genes_1,chr1:167498914-167523004:-,MRPL24->chr1:156707095-156711382:-,mitochondrial_ribosomal_protein_L24	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	CYP39A1--FAM83B	2	0	CYP39A1	2517	chr6:46609900:-	FAM83B	24118	chr6:54804504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1,FAM83B->chr6:54711569-54806820:+,family_with_sequence_similarity_83_member_B	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	NF1--LRRC37BP1	1	4	NF1	60081	chr17:29683600:+	LRRC37BP1	77615	chr17:28956698:+	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0086	0.0346	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,LRRC37BP1->chr17:28956698-28964482:+,leucine_rich_repeat_containing_37B_pseudogene_1	CAL851_BREAST	0.25	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	NRP1--PARD3	2	0	NRP1	4012	chr10:33619636:-	PARD3	64705	chr10:34420511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Kidney=[count:1=pct:7.1],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Kidney_-_Cortex=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Lung=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	CAL851_BREAST	1	1	0.0173	TRUE	0	3	0	3	0	TRUE	ACH-000857
CAL851_BREAST	NUP153--E2F1	2	0	NUP153	1149	chr6:17706508:-	E2F1	28723	chr20:32267780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	NUP153->chr6:17615269-17706656:-,nucleoporin_153kDa,E2F1->E2F_transcription_factor_1,Oncogene{Bushman},chr20:32263489-32274210:-	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	RP11-18I14.10--BCLAF1	2	0	RP11-18I14.10	1514	chr10:104210087:+	BCLAF1	16953	chr6:136597646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	RP11-18I14.10->chr10:104209574-104220863:+,BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	FBXL20--GSDMB	1	2	FBXL20	3225	chr17:37499433:-	GSDMB	26544	chr17:38068750:-	ONLY_REF_SPLICE	NO	6	22	0.33	0.12	0.0086	0.0173	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	CAL851_BREAST	0.12	0.33	0.0259	TRUE	0	1	0	1	1	TRUE	ACH-000857
CAL851_BREAST	MITF--LINC00930	1	1	MITF	1267	chr3:69788852:+	LINC00930	28509	chr15:93113926:-	ONLY_REF_SPLICE	YES	7	7	0.22	0.22	0.0086	0.0086	MITF->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:69788586-70017488:+,microphthalmia-associated_transcription_factor,LINC00930->chr15:93111048-93115272:-,long_intergenic_non-protein_coding_RNA_930	CAL851_BREAST	0.22	0.22	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000857
SW900_LUNG	CELF1--MTCH2	173	112	CELF1	3345	chr11:47574544:-	MTCH2	32890	chr11:47660603:-	ONLY_REF_SPLICE	YES	94	184	0.75	0.61	2.1184	1.3715	YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[51746],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	SW900_LUNG	0.61	0.75	3.4899	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	AEBP2--DCLK1	64	4	AEBP2	2869	chr12:19593304:+	DCLK1	33050	chr13:36413313:-	ONLY_REF_SPLICE	YES	51	1	0.57	0.99	0.7837	0.049	AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,DCLK1->chr13:36345478-36705443:-,doublecortin_like_kinase_1	SW900_LUNG	0.57	0.99	0.8327	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	MIR142--IGH@	57	0	MIR142	1039	chr17:56409831:-	IGH@	113632	chr14:106209407:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.698	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	SW900_LUNG	1	1	0.698	TRUE	0	1	0	3	1	TRUE	ACH-000669
SW900_LUNG	MIOX--ADM2	12	7	MIOX	2302	chr22:50926514:+	ADM2	10455	chr22:50922574:+	INCL_NON_REF_SPLICE	YES	0	22	1	0.46	0.1469	0.0857	LOCAL_REARRANGEMENT:+:[344],MIOX->chr22:50925213-50929077:+,myo-inositol_oxygenase,ADM2->adrenomedullin_2,chr22:50919985-50924869:+	SW900_LUNG	0.46	1	0.2326	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	PPP2R5B--RP11-59N23.3	13	1	PPP2R5B	8155	chr11:64695897:+	RP11-59N23.3	17767	chr12:21912848:+	ONLY_REF_SPLICE	YES	13	0	0.52	1	0.1592	0.0122	PPP2R5B->chr11:64685025-64701945:+,protein_phosphatase_2_regulatory_subunit_B',_beta,RP11-59N23.3->chr12:21815247-21912966:+	SW900_LUNG	0.52	1	0.1714	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	RALGAPA2--LARGE	7	5	RALGAPA2	3278	chr20:20656880:-	LARGE	73715	chr22:33733787:-	ONLY_REF_SPLICE	YES	6	4	0.67	0.75	0.0857	0.0612	{Klijn_CCL:Lung=1},RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-,LARGE->chr22:33558212-34318829:-,like-glycosyltransferase	SW900_LUNG	0.67	0.75	0.1469	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	ADRBK2--SEZ6L	5	6	ADRBK2	15003	chr22:26091181:+	SEZ6L	34623	chr22:26688372:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0612	0.0735	ADRBK2->adrenergic,_beta,_receptor_kinase_2,chr22:25960816-26125261:+,SEZ6L->chr22:26565440-26779562:+,seizure_related_6_homolog_like	SW900_LUNG	1	1	0.1347	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	GPR98--ITK	6	0	GPR98	27071	chr5:89954095:+	ITK	110955	chr5:156593099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0735	0	GPR98->chr5:89825161-90460038:+,ITK->IL2_inducible_T-cell_kinase,Oncogene{Bushman},chr5:156569944-156682201:+	SW900_LUNG	1	1	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	AEBP2--DCLK1	3	4	AEBP2	3226	chr12:19593661:+	DCLK1	33050	chr13:36413313:-	ONLY_REF_SPLICE	YES	68	1	0.09	0.88	0.0367	0.049	AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,DCLK1->chr13:36345478-36705443:-,doublecortin_like_kinase_1	SW900_LUNG	0.09	0.88	0.0857	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	EFNA4--RUSC1	3	0	EFNA4	2917	chr1:155039916:+	RUSC1	11568	chr1:155294636:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	{Klijn_CCL:Lymphoid=1},EFNA4->chr1:155036207-155042029:+,ephrin_A4,RUSC1->RUN_and_SH3_domain_containing_1,chr1:155290687-155300905:+	SW900_LUNG	1	1	0.0367	TRUE	0	0	0	2	0	TRUE	ACH-000669
SW900_LUNG	PSAP--GAPDH	3	0	PSAP	8522	chr10:73581679:-	GAPDH	20181	chr12:6646831:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SW900_LUNG	1	1	0.0367	TRUE	0	0	0	8	0	TRUE	ACH-000669
SW900_LUNG	SEPT11--CCNI	2	0	SEPT11	4239	chr4:77895960:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	SW900_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	RALGAPA2--LARGE	1	2	RALGAPA2	1114	chr20:20693018:-	LARGE	73715	chr22:33733787:-	ONLY_REF_SPLICE	YES	4	4	0.43	0.43	0.0122	0.0245	{Klijn_CCL:Lung=1},RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-,LARGE->chr22:33558212-34318829:-,like-glycosyltransferase	SW900_LUNG	0.43	0.43	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	BAZ1A--HEATR5A	1	1	BAZ1A	3435	chr14:35331250:-	HEATR5A	38097	chr14:31872255:-	ONLY_REF_SPLICE	YES	33	3	0.06	0.4	0.0122	0.0122	BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,HEATR5A->HEAT_repeat_containing_5A,chr14:31760994-31889788:-	SW900_LUNG	0.06	0.4	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000669
U118MG_CENTRAL_NERVOUS_SYSTEM	PTPN21--CEP128	108	47	PTPN21	3335	chr14:89016582:-	CEP128	46364	chr14:81304622:-	ONLY_REF_SPLICE	YES	21	19	0.88	0.89	0.7346	0.3197	PTPN21->Oncogene{Bushman},chr14:88932122-89021077:-,protein_tyrosine_phosphatase,_non-receptor_type_21,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.88	0.89	1.0543	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CARHSP1--PDILT	33	0	CARHSP1	1044	chr16:8962823:-	PDILT	18911	chr16:20387523:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2245	0	CARHSP1->calcium_regulated_heat_stable_protein_1,chr16:8946799-8962866:-,PDILT->chr16:20370492-20416059:-,protein_disulfide_isomerase_like,_testis_expressed	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.2245	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ARFGEF1--PREX2	19	8	ARFGEF1	1514	chr8:68255399:-	PREX2	48348	chr8:68930081:+	ONLY_REF_SPLICE	YES	10	0	0.73	1	0.1292	0.0544	ARFGEF1->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_1,chr8:68085747-68255912:-,PREX2->ArcherDX_panel,FoundationOne_panel,chr8:68864353-69149265:+,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_2	U118MG_CENTRAL_NERVOUS_SYSTEM	0.73	1	0.1836	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CARHSP1--PDILT	16	0	CARHSP1	1044	chr16:8962823:-	PDILT	22504	chr16:20381011:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1088	0	CARHSP1->calcium_regulated_heat_stable_protein_1,chr16:8946799-8962866:-,PDILT->chr16:20370492-20416059:-,protein_disulfide_isomerase_like,_testis_expressed	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1088	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CEP128--ALDH6A1	13	9	CEP128	16734	chr14:81307026:-	ALDH6A1	44866	chr14:74541720:-	ONLY_REF_SPLICE	YES	17	14	0.56	0.61	0.0884	0.0612	CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,ALDH6A1->aldehyde_dehydrogenase_6_family_member_A1,chr14:74523553-74551196:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.56	0.61	0.1496	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ENTPD4--PHYHIP	11	8	ENTPD4	18819	chr8:23261467:-	PHYHIP	26319	chr8:22085899:-	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.0748	0.0544	ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4,PHYHIP->chr8:22077222-22089854:-,phytanoyl-CoA_2-hydroxylase_interacting_protein	U118MG_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.1292	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PTPN21--CEP128	1	47	PTPN21	4458	chr14:89013873:-	CEP128	46364	chr14:81304622:-	ONLY_REF_SPLICE	YES	24	19	0.67	0.72	0.0068	0.3197	PTPN21->Oncogene{Bushman},chr14:88932122-89021077:-,protein_tyrosine_phosphatase,_non-receptor_type_21,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.67	0.72	0.3265	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CARHSP1--PDILT	7	0	CARHSP1	1044	chr16:8962823:-	PDILT	26002	chr16:20371979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0476	0	CARHSP1->calcium_regulated_heat_stable_protein_1,chr16:8946799-8962866:-,PDILT->chr16:20370492-20416059:-,protein_disulfide_isomerase_like,_testis_expressed	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0476	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ENTPD4--R3HCC1	5	5	ENTPD4	18819	chr8:23261467:-	R3HCC1	32269	chr8:23153480:+	ONLY_REF_SPLICE	YES	0	110	1	0.08	0.034	0.034	LOCAL_INVERSION:-:+:[89504],ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4,R3HCC1->R3H_domain_and_coiled-coil_containing_1,chr8:23127633-23153792:+	U118MG_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CTD-3116E22.6--ZNF274	5	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.034	TRUE	0	0	0	13	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	SAMD1--NCL	4	0	SAMD1	2749	chr19:14200100:-	NCL	12168	chr2:232326293:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1,NCL->chr2:232318242-232348352:-,nucleolin	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0272	TRUE	0	0	0	3	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CARHSP1--PDILT	3	0	CARHSP1	1044	chr16:8962823:-	PDILT	23702	chr16:20376862:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CARHSP1->calcium_regulated_heat_stable_protein_1,chr16:8946799-8962866:-,PDILT->chr16:20370492-20416059:-,protein_disulfide_isomerase_like,_testis_expressed	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	STX6--SLC13A4	3	0	STX6	1273	chr1:180991775:-	SLC13A4	23460	chr7:135390398:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	STX6->chr1:180941861-180992047:-,syntaxin_6,SLC13A4->chr7:135365985-135414006:-,solute_carrier_family_13_member_4	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	TRIM9--RBPJ	3	0	TRIM9	2944	chr14:51560836:-	RBPJ	33514	chr4:26364068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	TRIM9->chr14:51441980-51562779:-,tripartite_motif_containing_9,RBPJ->chr4:26165077-26436541:+,recombination_signal_binding_protein_for_immunoglobulin_kappa_J_region	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ZZZ3--PIGK	3	0	ZZZ3	1158	chr1:78148947:-	PIGK	34642	chr1:77588044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3,PIGK->chr1:77554675-77685115:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_K	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	1	0	2	1	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ADAM9--TAOK1	2	0	ADAM9	1292	chr8:38854679:+	TAOK1	55846	chr17:27861136:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,TAOK1->TAO_kinase_1,chr17:27717482-27878922:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	AFTPH--SERTAD2	2	0	AFTPH	1282	chr2:64751746:+	SERTAD2	20165	chr2:64864009:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	LOCAL_INVERSION:+:-:[38616],AFTPH->aftiphilin,chr2:64751465-64820139:+,SERTAD2->SERTA_domain_containing_2,chr2:64858755-64978139:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	AHI1--GNAS	2	0	AHI1	30632	chr6:135679270:-	GNAS	61369	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	AHI1->Abelson_helper_integration_site_1,Oncogene{Bushman},chr6:135604670-135818914:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	15	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ARHGEF10--PABPC1L	2	0	ARHGEF10	3311	chr8:1791602:+	PABPC1L	49211	chr20:43552802:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	ARHGEF10->Rho_guanine_nucleotide_exchange_factor_10,chr8:1772142-1906807:+,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	AUTS2--TYW1B	2	0	AUTS2	13589	chr7:70163606:+	TYW1B	46007	chr7:72209578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,TYW1B->chr7:72023729-72298777:-,tRNA-yW_synthesizing_protein_1_homolog_B	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	BACH1--OSER1	2	0	BACH1	6196	chr21:30671919:+	OSER1	29542	chr20:42831714:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	BACH1->BTB_domain_and_CNC_homolog_1,chr21:30566392-31003071:+,OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	BTN3A3--ECHS1	2	0	BTN3A3	3186	chr6:26444532:+	ECHS1	20941	chr10:135176437:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	BTN3A3->butyrophilin_subfamily_3_member_A3,chr6:26440700-26453643:+,ECHS1->chr10:135175984-135187193:-,enoyl-CoA_hydratase,_short_chain,_1,_mitochondrial	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	C2orf74--ALDH18A1	2	0	C2orf74	1089	chr2:61372331:+	ALDH18A1	14293	chr10:97388249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	C2orf74->chr2:61372243-61391964:+,chromosome_2_open_reading_frame_74,ALDH18A1->aldehyde_dehydrogenase_18_family_member_A1,chr10:97365696-97416463:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CDC5L--MCEE	2	0	CDC5L	9008	chr6:44376369:+	MCEE	25601	chr2:71351673:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	CDC5L->cell_division_cycle_5_like,chr6:44355262-44418163:+,MCEE->chr2:71336814-71357369:-,methylmalonyl-CoA_epimerase	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CHD2--CGGBP1	2	0	CHD2	6529	chr15:93444529:+	CGGBP1	62979	chr3:88107373:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,CGGBP1->CGG_triplet_repeat_binding_protein_1,chr3:88101094-88199035:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CLHC1--TCEA1	2	0	CLHC1	5395	chr2:55449371:-	TCEA1	23370	chr8:54923052:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	CLHC1->chr2:55401927-55459699:-,clathrin_heavy_chain_linker_domain_containing_1,TCEA1->Oncogene{Bushman},chr8:54879112-54935089:-,transcription_elongation_factor_A1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	COQ6--LSM14A	2	0	COQ6	4649	chr14:74422631:+	LSM14A	19936	chr19:34699834:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	COQ6->chr14:74416629-74430373:+,coenzyme_Q6,_monooxygenase,LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CTD-2410N18.5--RPLP1	2	0	CTD-2410N18.5	1312	chr5:133561451:-	RPLP1	8870	chr15:69747509:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	CTD-2410N18.5->chr5:133502861-133561762:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CTNNB1--TRAK1	2	0	CTNNB1	3896	chr3:41241161:+	TRAK1	27093	chr3:42166912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	DIDO1--EGFR	2	0	DIDO1	1157	chr20:61569148:-	EGFR	42697	chr7:55225356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	DLC1--ATG5	2	0	DLC1	10024	chr8:13133771:-	ATG5	41937	chr6:106649964:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,ATG5->autophagy_related_5,chr6:106632351-106773666:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ELK3--MED1	2	0	ELK3	5794	chr12:96617551:+	MED1	26447	chr17:37584043:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	ELK3->ELK3,_ETS_transcription_factor,Oncogene{Bushman},chr12:96588160-96663613:+,MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	FAM20C--CTTN	2	0	FAM20C	5852	chr7:208976:+	CTTN	18473	chr11:70251371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	FUT8--CHURC1	2	0	FUT8	22918	chr14:66200099:+	CHURC1	30122	chr14:65390709:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,CHURC1->chr14:65381079-65411309:+,churchill_domain_containing_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	GTF2H5--NEK9	2	0	GTF2H5	2113	chr6:158591570:+	NEK9	16302	chr14:75587877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5,NEK9->NIMA_related_kinase_9,chr14:75548822-75594047:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	HMGA2--PTCD3	2	0	HMGA2	3338	chr12:66221867:+	PTCD3	47437	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	LEPREL4--MGST1	2	0	LEPREL4	3899	chr17:39965958:-	MGST1	18015	chr12:16510539:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	LEPREL4->chr17:39958199-39968856:-,MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MGST1--GLTSCR2	2	0	MGST1	5873	chr12:16507204:+	GLTSCR2	33359	chr19:48259785:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MYL6B--PMF1	2	0	MYL6B	4337	chr12:56549376:+	PMF1	16497	chr1:156202111:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	MYL6B->chr12:56546040-56553431:+,myosin_light_chain_6B,PMF1->chr1:156182784-156212874:+,polyamine-modulated_factor_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	NUPL2--CADM1	2	0	NUPL2	3987	chr7:23226765:+	CADM1	21419	chr11:115111140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,CADM1->cell_adhesion_molecule_1,chr11:115039938-115375675:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PCMTD1--PLAG1	2	0	PCMTD1	1246	chr8:52811490:-	PLAG1	22743	chr8:57092072:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,PLAG1->Oncogene{Bushman},PLAG1_zinc_finger,chr8:57073463-57123883:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PELI3--SF3B2	2	0	PELI3	6844	chr11:66241396:+	SF3B2	17489	chr11:65822547:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	PELI3->chr11:66234216-66244808:+,pellino_E3_ubiquitin_protein_ligase_family_member_3,SF3B2->chr11:65818200-65836779:+,splicing_factor_3b_subunit_2	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PLOD1--C14orf80	2	0	PLOD1	6745	chr1:12012792:+	C14orf80	30891	chr14:105962217:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	PLOD1->chr1:11994262-12035595:+,procollagen-lysine,2-oxoglutarate_5-dioxygenase_1,C14orf80->chr14:105956192-105965912:+,chromosome_14_open_reading_frame_80	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PON2--COPS2	2	0	PON2	1940	chr7:95063571:-	COPS2	19991	chr15:49431850:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	PON2->chr7:95034175-95064510:-,paraoxonase_2,COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PPIL2--XPO6	2	0	PPIL2	20579	chr22:22043138:+	XPO6	63250	chr16:28109960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	PPIL2->chr22:22006559-22054304:+,peptidylprolyl_isomerase_like_2,XPO6->chr16:28109300-28223241:-,exportin_6	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RAD18--AC034187.2	2	0	RAD18	14138	chr3:8932073:-	AC034187.2	25478	chr3:8615560:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,AC034187.2->chr3:8615412-8634810:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RCC1--GBE1	2	0	RCC1	1142	chr1:28832596:+	GBE1	36126	chr3:81586246:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GBE1->chr3:81538850-81811312:-,glucan_(1,4-alpha-),_branching_enzyme_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP11-18H7.1--GSK3B	2	0	RP11-18H7.1	1148	chr3:119813889:+	GSK3B	19505	chr3:119595355:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	LOCAL_INVERSION:+:-:[478],RP11-18H7.1->chr3:119813742-119855630:+,GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP11-613M10.8--AKAP2	2	0	RP11-613M10.8	2282	chr9:37588808:-	AKAP2	30727	chr9:112898407:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	RP11-613M10.8->chr9:37512544-37592466:-,AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	SBNO1--SPPL2A	2	0	SBNO1	2275	chr12:123834857:-	SPPL2A	49295	chr15:51018574:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	SBNO1->Oncogene{Bushman},chr12:123773656-123849390:-,strawberry_notch_homolog_1_(Drosophila),SPPL2A->chr15:50999506-51058005:-,signal_peptide_peptidase_like_2A	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	SOS1--MEF2A	2	0	SOS1	6326	chr2:39283843:-	MEF2A	48947	chr15:100246934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-,MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	SPINT2--SNAP47	2	0	SPINT2	1100	chr19:38734774:+	SNAP47	20351	chr1:227935393:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2,SNAP47->chr1:227916240-227968927:+,synaptosome_associated_protein_47kDa	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	STK11--AMMECR1L	2	0	STK11	3716	chr19:1207202:+	AMMECR1L	20471	chr2:128641886:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11,AMMECR1L->AMMECR1_like,chr2:128619204-128643496:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	TICRR--CTTNBP2	2	0	TICRR	24511	chr15:90170413:+	CTTNBP2	52050	chr7:117386153:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	TICRR->TOPBP1_interacting_checkpoint_and_replication_regulator,chr15:90118713-90174287:+,CTTNBP2->chr7:117350705-117514193:-,cortactin_binding_protein_2	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	TOPBP1--AGFG1	2	0	TOPBP1	6448	chr3:133374134:-	AGFG1	48682	chr2:228418426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	TOPBP1->chr3:133317019-133380737:-,topoisomerase_(DNA)_II_binding_protein_1,AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	TWSG1--VAPA	2	0	TWSG1	2314	chr18:9337350:+	VAPA	17683	chr18:9931807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	TWSG1->chr18:9334765-9402418:+,twisted_gastrulation_BMP_signaling_modulator_1,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	UBXN7--CDK13	2	0	UBXN7	9266	chr3:196118684:-	CDK13	32138	chr7:40037093:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	UBXN7->UBX_domain_protein_7,chr3:196074533-196159345:-,CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	WDR83--VIM	2	0	WDR83	4507	chr19:12781635:+	VIM	17766	chr10:17278293:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	WDR83->WD_repeat_domain_83,chr19:12777614-12786646:+,VIM->chr10:17270258-17279592:+,vimentin	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ZNF451--CTNND1	2	0	ZNF451	2950	chr6:56955692:+	CTNND1	46728	chr11:57563049:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451,CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PTPN21--CEP128	1	3	PTPN21	4458	chr14:89013873:-	CEP128	48572	chr14:81297638:-	ONLY_REF_SPLICE	YES	24	39	0.14	0.09	0.0068	0.0204	PTPN21->Oncogene{Bushman},chr14:88932122-89021077:-,protein_tyrosine_phosphatase,_non-receptor_type_21,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.09	0.14	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PTPN21--CEP128	1	3	PTPN21	3335	chr14:89016582:-	CEP128	48572	chr14:81297638:-	ONLY_REF_SPLICE	YES	21	39	0.16	0.09	0.0068	0.0204	PTPN21->Oncogene{Bushman},chr14:88932122-89021077:-,protein_tyrosine_phosphatase,_non-receptor_type_21,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.09	0.16	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000040
ZR7530_BREAST	USP32--CWC25	1273	255	USP32	4918	chr17:58422842:-	CWC25	49141	chr17:36971350:-	ONLY_REF_SPLICE	YES	35	151	0.98	0.91	15.5917	3.1232	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-	ZR7530_BREAST	0.91	0.98	18.7149	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	DDX5--DEPTOR	580	432	DDX5	3124	chr17:62502194:-	DEPTOR	13837	chr8:120940640:+	ONLY_REF_SPLICE	YES	895	247	0.53	0.8	7.1038	5.2911	{Klijn_CCL:Breast=1},DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	ZR7530_BREAST	0.53	0.8	12.3949	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PRKDC--RP11-434I12.3	393	141	PRKDC	57477	chr8:48746757:-	RP11-434I12.3	90060	chr8:74274558:+	ONLY_REF_SPLICE	YES	56	2	0.91	1	4.8135	1.727	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,RP11-434I12.3->chr8:74271148-74275023:+	ZR7530_BREAST	0.91	1	6.5405	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TAOK1--PCGF2	215	76	TAOK1	1561	chr17:27718042:+	PCGF2	43636	chr17:36896695:-	ONLY_REF_SPLICE	YES	46	33	0.86	0.9	2.6333	0.9308	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2	ZR7530_BREAST	0.86	0.9	3.5641	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	BCAS3--HOXB9	175	92	BCAS3	11036	chr17:58885437:+	HOXB9	61254	chr17:46700497:-	ONLY_REF_SPLICE	YES	13	0	0.95	1	2.1434	1.1268	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,HOXB9->chr17:46698518-46703839:-,homeobox_B9	ZR7530_BREAST	0.95	1	3.2702	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PLEC--ENPP2	133	47	PLEC	2231	chr8:145049345:-	ENPP2	43843	chr8:120633759:-	ONLY_REF_SPLICE	YES	75	0	0.71	1	1.629	0.5757	PLEC->chr8:144989321-145050902:-,plectin,ENPP2->Oncogene{Bushman},chr8:120569326-120685693:-,ectonucleotide_pyrophosphatase/phosphodiesterase_2	ZR7530_BREAST	0.71	1	2.2047	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PPM1D--TRAPPC9	110	40	PPM1D	5213	chr17:58711338:+	TRAPPC9	74739	chr8:140744445:-	ONLY_REF_SPLICE	YES	344	73	0.3	0.67	1.3473	0.4899	{Klijn_CCL:Breast=1},PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	ZR7530_BREAST	0.3	0.67	1.8372	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	USP32--CWC25	41	263	USP32	4918	chr17:58422842:-	CWC25	48497	chr17:36971994:-	ONLY_REF_SPLICE	YES	35	153	0.9	0.67	0.5022	3.2212	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-	ZR7530_BREAST	0.67	0.9	3.7234	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	HYLS1--TIMM23	93	5	HYLS1	3110	chr11:125757660:+	TIMM23	18989	chr10:51592619:-	ONLY_REF_SPLICE	YES	1	141	0.99	0.41	1.1391	0.0612	HYLS1->chr11:125753509-125770543:+,hydrolethalus_syndrome_1,TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23	ZR7530_BREAST	0.41	0.99	1.2003	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TRPS1--LASP1	75	46	TRPS1	10091	chr8:116631359:-	LASP1	30290	chr17:37034339:+	ONLY_REF_SPLICE	YES	168	1760	0.42	0.06	0.9186	0.5634	{Klijn_CCL:Breast=1},TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+	ZR7530_BREAST	0.06	0.42	1.482	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	CENPO--RAB10	67	16	CENPO	3000	chr2:25022713:+	RAB10	16251	chr2:26321531:+	ONLY_REF_SPLICE	YES	13	101	0.86	0.45	0.8206	0.196	CENPO->centromere_protein_O,chr2:25016005-25045245:+,RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+	ZR7530_BREAST	0.45	0.86	1.0166	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	DDX5--NPEPPS	48	44	DDX5	3124	chr17:62502194:-	NPEPPS	18498	chr17:45646783:+	ONLY_REF_SPLICE	YES	895	199	0.09	0.32	0.5879	0.5389	DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+	ZR7530_BREAST	0.09	0.32	1.1268	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PRKDC--RP11-434I12.3	17	144	PRKDC	57477	chr8:48746757:-	RP11-434I12.3	88938	chr8:74271341:+	INCL_NON_REF_SPLICE	YES	56	1	0.74	0.99	0.2082	1.7637	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,RP11-434I12.3->chr8:74271148-74275023:+	ZR7530_BREAST	0.74	0.99	1.9719	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PPP1R16A--RP11-152P17.2	50	9	PPP1R16A	1159	chr8:145703510:+	RP11-152P17.2	16346	chr8:106939945:-	ONLY_REF_SPLICE	YES	5	1	0.92	0.98	0.6124	0.1102	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,RP11-152P17.2->chr8:106792474-107072752:-	ZR7530_BREAST	0.92	0.98	0.7226	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PDP2--RNF213	32	4	PDP2	2331	chr16:66914543:+	RNF213	53687	chr17:78324101:+	ONLY_REF_SPLICE	YES	3	17	0.92	0.68	0.3919	0.049	PDP2->chr16:66912492-66929657:+,pyruvate_dehyrogenase_phosphatase_catalytic_subunit_2,RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213	ZR7530_BREAST	0.68	0.92	0.4409	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	SRCIN1--RP11-1407O15.2	28	8	SRCIN1	1298	chr17:36761886:-	RP11-1407O15.2	37490	chr17:36375177:-	INCL_NON_REF_SPLICE	YES	2	439	0.95	0.08	0.3429	0.098	SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-,RP11-1407O15.2->chr17:36337717-36421858:-	ZR7530_BREAST	0.08	0.95	0.4409	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	ZMYM4--OPRD1	28	5	ZMYM4	24352	chr1:35873760:+	OPRD1	35799	chr1:29185466:+	ONLY_REF_SPLICE	YES	23	0	0.59	1	0.3429	0.0612	ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,OPRD1->chr1:29138654-29190208:+,opioid_receptor_delta_1	ZR7530_BREAST	0.59	1	0.4041	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	RP11-152P17.2--SLC13A2	26	0	RP11-152P17.2	3511	chr8:106939879:-	SLC13A2	18114	chr17:26816232:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3184	0	RP11-152P17.2->chr8:106792474-107072752:-,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	ZR7530_BREAST	1	1	0.3184	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TAOK1--RP11-1018N14.1	22	13	TAOK1	14861	chr17:27829741:+	RP11-1018N14.1	42702	chr17:49401093:-	ONLY_REF_SPLICE	YES	20	0	0.64	1	0.2695	0.1592	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,RP11-1018N14.1->chr17:49389970-49412526:-	ZR7530_BREAST	0.64	1	0.4287	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PPP1R16A--RP11-152P17.2	19	17	PPP1R16A	1554	chr8:145703905:+	RP11-152P17.2	16346	chr8:106939945:-	ONLY_REF_SPLICE	YES	26	1	0.58	0.97	0.2327	0.2082	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,RP11-152P17.2->chr8:106792474-107072752:-	ZR7530_BREAST	0.58	0.97	0.4409	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	USP32--CWC25	3	73	USP32	4918	chr17:58422842:-	CWC25	49317	chr17:36971174:-	INCL_NON_REF_SPLICE	YES	35	430	0.68	0.15	0.0367	0.8941	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-	ZR7530_BREAST	0.15	0.68	0.9308	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PHF20L1--RP11-369K17.1	15	5	PHF20L1	21076	chr8:133829790:+	RP11-369K17.1	41311	chr8:122055623:+	ONLY_REF_SPLICE	YES	307	0	0.06	1	0.1837	0.0612	PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+,RP11-369K17.1->chr8:121925305-122131994:+	ZR7530_BREAST	0.06	1	0.2449	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PLEC--ENPP2	3	49	PLEC	3358	chr8:145047571:-	ENPP2	43843	chr8:120633759:-	ONLY_REF_SPLICE	NO	84	0	0.38	1	0.0367	0.6002	PLEC->chr8:144989321-145050902:-,plectin,ENPP2->Oncogene{Bushman},chr8:120569326-120685693:-,ectonucleotide_pyrophosphatase/phosphodiesterase_2	ZR7530_BREAST	0.38	1	0.6369	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	USP32--SMURF2	14	3	USP32	4918	chr17:58422842:-	SMURF2	48330	chr17:62602758:-	ONLY_REF_SPLICE	YES	35	0	0.33	1	0.1715	0.0367	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	ZR7530_BREAST	0.33	1	0.2082	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TAOK1--RP11-1018N14.1	12	7	TAOK1	14861	chr17:27829741:+	RP11-1018N14.1	43802	chr17:49399037:-	ONLY_REF_SPLICE	YES	20	0	0.49	1	0.147	0.0857	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,RP11-1018N14.1->chr17:49389970-49412526:-	ZR7530_BREAST	0.49	1	0.2327	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	ADCY3--RP5-1061H20.3	13	2	ADCY3	18825	chr2:25047271:-	RP5-1061H20.3	27274	chr1:229407117:-	INCL_NON_REF_SPLICE	YES	13	0	0.54	1	0.1592	0.0245	ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-,RP5-1061H20.3->chr1:229406674-229407346:-	ZR7530_BREAST	0.54	1	0.1837	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	USP32--CWC25	1	44	USP32	4918	chr17:58422842:-	CWC25	50378	chr17:36969117:-	ONLY_REF_SPLICE	YES	35	706	0.56	0.06	0.0122	0.5389	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-	ZR7530_BREAST	0.06	0.56	0.5511	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	DDX5--DEPTOR	11	3	DDX5	2445	chr17:62502873:-	DEPTOR	13837	chr8:120940640:+	ONLY_REF_SPLICE	YES	45	247	0.24	0.05	0.1347	0.0367	{Klijn_CCL:Breast=1},DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	ZR7530_BREAST	0.05	0.24	0.1714	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TAOK1--RP11-1018N14.1	10	4	TAOK1	14861	chr17:27829741:+	RP11-1018N14.1	44893	chr17:49390145:-	ONLY_REF_SPLICE	YES	20	0	0.41	1	0.1225	0.049	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,RP11-1018N14.1->chr17:49389970-49412526:-	ZR7530_BREAST	0.41	1	0.1715	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	RNF213--TACC1	10	3	RNF213	38691	chr17:78322086:+	TACC1	89334	chr8:38646222:+	ONLY_REF_SPLICE	YES	29	12	0.31	0.52	0.1225	0.0367	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	ZR7530_BREAST	0.31	0.52	0.1592	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	NPDC1--SCGB2A2	9	2	NPDC1	4655	chr9:139935534:-	SCGB2A2	9271	chr11:62037630:+	INCL_NON_REF_SPLICE	YES	288	0	0.04	1	0.1102	0.0245	NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1,SCGB2A2->chr11:62037627-62040628:+,secretoglobin_family_2A_member_2	ZR7530_BREAST	0.04	1	0.1347	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	RNF213--TACC1	7	10	RNF213	38691	chr17:78322086:+	TACC1	82693	chr8:38599869:+	ONLY_REF_SPLICE	YES	29	0	0.37	1	0.0857	0.1225	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	ZR7530_BREAST	0.37	1	0.2082	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TAOK1--RP11-1018N14.1	5	13	TAOK1	14861	chr17:27829741:+	RP11-1018N14.1	40583	chr17:49411479:-	ONLY_REF_SPLICE	YES	20	1	0.47	0.95	0.0612	0.1592	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,RP11-1018N14.1->chr17:49389970-49412526:-	ZR7530_BREAST	0.47	0.95	0.2204	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PPP1R16A--RP11-152P17.2	3	18	PPP1R16A	1585	chr8:145703936:+	RP11-152P17.2	16346	chr8:106939945:-	INCL_NON_REF_SPLICE	YES	33	1	0.39	0.95	0.0367	0.2205	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,RP11-152P17.2->chr8:106792474-107072752:-	ZR7530_BREAST	0.39	0.95	0.2572	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PPP1R16A--SLC13A2	4	12	PPP1R16A	1159	chr8:145703510:+	SLC13A2	16565	chr17:26816232:+	ONLY_REF_SPLICE	YES	5	4	0.76	0.8	0.049	0.147	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	ZR7530_BREAST	0.76	0.8	0.196	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	CENPO--RAB10	6	3	CENPO	1830	chr2:25016834:+	RAB10	16251	chr2:26321531:+	ONLY_REF_SPLICE	YES	16	101	0.36	0.08	0.0735	0.0367	CENPO->centromere_protein_O,chr2:25016005-25045245:+,RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+	ZR7530_BREAST	0.08	0.36	0.1102	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PDP2--RNF213	4	10	PDP2	2447	chr16:66914659:+	RNF213	53687	chr17:78324101:+	ONLY_REF_SPLICE	YES	11	17	0.56	0.45	0.049	0.1225	PDP2->chr16:66912492-66929657:+,pyruvate_dehyrogenase_phosphatase_catalytic_subunit_2,RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213	ZR7530_BREAST	0.45	0.56	0.1715	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PPP1R16A--SLC13A2	3	13	PPP1R16A	1159	chr8:145703510:+	SLC13A2	15424	chr17:26814428:+	ONLY_REF_SPLICE	YES	5	5	0.76	0.76	0.0367	0.1592	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	ZR7530_BREAST	0.76	0.76	0.1959	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	RAB11FIP3--RP11-554D15.3	6	0	RAB11FIP3	7902	chr16:539000:+	RP11-554D15.3	27995	chr6:75240313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0735	0	RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,RP11-554D15.3->chr6:75239964-75443995:-	ZR7530_BREAST	1	1	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TAOK1--PCGF2	1	20	TAOK1	1125	chr17:27717606:+	PCGF2	43636	chr17:36896695:-	ONLY_REF_SPLICE	YES	89	33	0.19	0.39	0.0122	0.245	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2	ZR7530_BREAST	0.19	0.39	0.2572	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PLEC--ENPP2	3	11	PLEC	2231	chr8:145049345:-	ENPP2	44969	chr8:120631544:-	ONLY_REF_SPLICE	YES	75	19	0.16	0.42	0.0367	0.1347	PLEC->chr8:144989321-145050902:-,plectin,ENPP2->Oncogene{Bushman},chr8:120569326-120685693:-,ectonucleotide_pyrophosphatase/phosphodiesterase_2	ZR7530_BREAST	0.16	0.42	0.1714	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PPP1R16A--RP11-152P17.2	5	2	PPP1R16A	1159	chr8:145703510:+	RP11-152P17.2	18487	chr8:106810670:-	ONLY_REF_SPLICE	YES	5	1	0.58	0.88	0.0612	0.0245	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,RP11-152P17.2->chr8:106792474-107072752:-	ZR7530_BREAST	0.58	0.88	0.0857	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	ARSG--CEP112	5	1	ARSG	18733	chr17:66397591:+	CEP112	52883	chr17:63848152:-	ONLY_REF_SPLICE	YES	11	1	0.35	0.86	0.0612	0.0122	ARSG->arylsulfatase_G,chr17:66255323-66418872:+,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	ZR7530_BREAST	0.35	0.86	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PCGF2--ZNF652	4	3	PCGF2	2939	chr17:36904132:-	ZNF652	16154	chr17:47395345:-	ONLY_REF_SPLICE	YES	26	3	0.21	0.7	0.049	0.0367	PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652	ZR7530_BREAST	0.21	0.7	0.0857	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PCGF2--ZNF652	4	2	PCGF2	2622	chr17:36904449:-	ZNF652	16154	chr17:47395345:-	ONLY_REF_SPLICE	YES	4	3	0.6	0.67	0.049	0.0245	PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652	ZR7530_BREAST	0.6	0.67	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	USP32--SMURF2	4	2	USP32	4918	chr17:58422842:-	SMURF2	49369	chr17:62594608:-	ONLY_REF_SPLICE	YES	35	14	0.15	0.3	0.049	0.0245	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	ZR7530_BREAST	0.15	0.3	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	HYLS1--TIMM23	3	5	HYLS1	3110	chr11:125757660:+	TIMM23	18147	chr10:51593461:-	INCL_NON_REF_SPLICE	YES	1	159	0.89	0.05	0.0367	0.0612	HYLS1->chr11:125753509-125770543:+,hydrolethalus_syndrome_1,TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23	ZR7530_BREAST	0.05	0.89	0.0979	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PPP1R16A--RP11-152P17.2	2	7	PPP1R16A	1554	chr8:145703905:+	RP11-152P17.2	18487	chr8:106810670:-	ONLY_REF_SPLICE	YES	26	1	0.26	0.9	0.0245	0.0857	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,RP11-152P17.2->chr8:106792474-107072752:-	ZR7530_BREAST	0.26	0.9	0.1102	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PDP2--RNF213	2	5	PDP2	2355	chr16:66914567:+	RNF213	53687	chr17:78324101:+	ONLY_REF_SPLICE	YES	9	17	0.44	0.29	0.0245	0.0612	PDP2->chr16:66912492-66929657:+,pyruvate_dehyrogenase_phosphatase_catalytic_subunit_2,RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213	ZR7530_BREAST	0.29	0.44	0.0857	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TIAM1--NRIP1	3	1	TIAM1	2051	chr21:32931240:-	NRIP1	41915	chr21:16415895:-	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0367	0.0122	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1	ZR7530_BREAST	0.44	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	CISD3--IKZF3	3	0	CISD3	2205	chr17:36887692:+	IKZF3	11200	chr17:37949186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	CISD3->CDGSH_iron_sulfur_domain_3,chr17:36886488-36891297:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	ZR7530_BREAST	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TRAPPC9--RP11-1079K10.3	3	0	TRAPPC9	3535	chr8:141460889:-	RP11-1079K10.3	69450	chr17:47441641:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,RP11-1079K10.3->chr17:47438527-47447360:+	ZR7530_BREAST	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	APPBP2--PHF20L1	2	0	APPBP2	14268	chr17:58538024:-	PHF20L1	31137	chr8:133806656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-,PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+	ZR7530_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	ARSG--CEP112	2	0	ARSG	15317	chr17:66381313:+	CEP112	52883	chr17:63848152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	ARSG->arylsulfatase_G,chr17:66255323-66418872:+,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	ZR7530_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	NUCB2--ACTR6	2	0	NUCB2	17892	chr11:17331222:+	ACTR6	43610	chr12:100612193:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	NUCB2->chr11:17229700-17371521:+,nucleobindin_2,ACTR6->ARP6_actin-related_protein_6_homolog,chr12:100592900-100635643:+	ZR7530_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	RP11-152P17.2--SLC13A2	2	0	RP11-152P17.2	3511	chr8:106939879:-	SLC13A2	16973	chr17:26814428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	RP11-152P17.2->chr8:106792474-107072752:-,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	ZR7530_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	RNF213--TACC1	1	3	RNF213	38691	chr17:78322086:+	TACC1	91645	chr8:38677040:+	ONLY_REF_SPLICE	NO	29	13	0.12	0.24	0.0122	0.0367	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	ZR7530_BREAST	0.12	0.24	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	ZMYM4--OPRD1	1	3	ZMYM4	23200	chr1:35871069:+	OPRD1	35799	chr1:29185466:+	ONLY_REF_SPLICE	NO	36	0	0.1	1	0.0122	0.0367	ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,OPRD1->chr1:29138654-29190208:+,opioid_receptor_delta_1	ZR7530_BREAST	0.1	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000828
NCIH841_LUNG	DPH1--CCDC42	451	1	DPH1	1121	chr17:1933524:+	CCDC42	18585	chr17:8638572:-	ONLY_REF_SPLICE	YES	11	3	0.98	0.99	2.3966	0.0053	DPH1->Oncogene{Bushman},chr17:1933404-1946724:+,diphthamide_biosynthesis_1,CCDC42->chr17:8633252-8648537:-,coiled-coil_domain_containing_42	NCIH841_LUNG	0.98	0.99	2.4019	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	PELP1--RAP1GAP2	122	56	PELP1	8027	chr17:4578104:-	RAP1GAP2	32739	chr17:2921355:+	ONLY_REF_SPLICE	YES	308	38	0.37	0.82	0.6483	0.2976	PELP1->chr17:4574679-4607632:-,proline,_glutamate_and_leucine_rich_protein_1,RAP1GAP2->RAP1_GTPase_activating_protein_2,chr17:2680350-2941033:+	NCIH841_LUNG	0.37	0.82	0.9459	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	SPTBN1--SLC9A3R2	95	70	SPTBN1	4816	chr2:54753703:+	SLC9A3R2	59067	chr16:2086729:+	ONLY_REF_SPLICE	YES	306	135	0.35	0.55	0.5048	0.372	GTEx&tcga_normals:1/3694=0.03%,SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,SLC9A3R2->SLC9A3_regulator_2,chr16:2075357-2089027:+	NCIH841_LUNG	0.35	0.55	0.8768	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	LSMD1--VPS53	72	53	LSMD1	2175	chr17:7786553:-	VPS53	21773	chr17:565135:-	ONLY_REF_SPLICE	YES	54	63	0.7	0.66	0.3826	0.2816	LSMD1->chr17:7760003-7788556:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	NCIH841_LUNG	0.66	0.7	0.6642	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	TMEM50B--AP000302.58	47	15	TMEM50B	1174	chr21:34852145:-	AP000302.58	20283	chr21:34856149:-	INCL_NON_REF_SPLICE	YES	164	2	0.27	0.97	0.2498	0.0797	LOCAL_REARRANGEMENT:-:[2488],TMEM50B->chr21:34804792-34852318:-,transmembrane_protein_50B,AP000302.58->chr21:34854806-34856565:-	NCIH841_LUNG	0.27	0.97	0.3295	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	PTMA--PTMS	46	0	PTMA	6054	chr2:232576687:+	PTMS	13428	chr12:6878793:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2444	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH841_LUNG	1	1	0.2444	TRUE	0	0	0	16	0	TRUE	ACH-000292
NCIH841_LUNG	ZMYM4--ARL15	23	12	ZMYM4	6345	chr1:35827390:+	ARL15	39071	chr5:53409240:-	ONLY_REF_SPLICE	YES	148	44	0.19	0.44	0.1222	0.0638	ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-	NCIH841_LUNG	0.19	0.44	0.186	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	SMG6--MYO15A	23	11	SMG6	20091	chr17:2091693:-	MYO15A	47166	chr17:18027797:+	ONLY_REF_SPLICE	YES	49	8	0.41	0.81	0.1222	0.0585	SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-,MYO15A->chr17:18012020-18083116:+,myosin_XVA	NCIH841_LUNG	0.41	0.81	0.1807	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	ZNF586--AC006115.3	20	15	ZNF586	1224	chr19:58281246:+	AC006115.3	21446	chr19:57301296:+	ONLY_REF_SPLICE	YES	80	1	0.3	0.97	0.1063	0.0797	ZNF586->chr19:58281023-58331307:+,zinc_finger_protein_586,AC006115.3->chr19:57202054-57311014:+	NCIH841_LUNG	0.3	0.97	0.186	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	NXN--COX10-AS1	20	11	NXN	1452	chr17:882559:-	COX10-AS1	24794	chr17:13937733:-	ONLY_REF_SPLICE	YES	34	86	0.48	0.26	0.1063	0.0585	NXN->chr17:702553-883010:-,nucleoredoxin,COX10-AS1->COX10_antisense_RNA_1,chr17:13659795-13972812:-	NCIH841_LUNG	0.26	0.48	0.1648	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	PTMA--PTMS	18	0	PTMA	6054	chr2:232576687:+	PTMS	13958	chr12:6879323:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0957	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH841_LUNG	1	1	0.0957	TRUE	0	0	0	16	0	TRUE	ACH-000292
NCIH841_LUNG	SMG6--MYO15A	8	21	SMG6	20091	chr17:2091693:-	MYO15A	41265	chr17:18021896:+	ONLY_REF_SPLICE	YES	49	0	0.37	1	0.0425	0.1116	SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-,MYO15A->chr17:18012020-18083116:+,myosin_XVA	NCIH841_LUNG	0.37	1	0.1541	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	ZMYM4--ARL15	12	5	ZMYM4	3227	chr1:35791006:+	ARL15	39071	chr5:53409240:-	ONLY_REF_SPLICE	YES	161	44	0.1	0.28	0.0638	0.0266	ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-	NCIH841_LUNG	0.1	0.28	0.0904	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	ZNF217--SIGLEC5	12	5	ZNF217	2554	chr20:52224893:-	SIGLEC5	26446	chr19:52115675:-	ONLY_REF_SPLICE	YES	142	0	0.11	1	0.0638	0.0266	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,SIGLEC5->chr19:52114781-52150151:-,chr19:52115344-52150142:-,sialic_acid_binding_Ig_like_lectin_5	NCIH841_LUNG	0.11	1	0.0904	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	ERBB4--LL0XNC01-237H1.2	9	12	ERBB4	6418	chr2:212812155:-	LL0XNC01-237H1.2	47186	chrX:102152502:+	ONLY_REF_SPLICE	YES	54	8	0.28	0.72	0.0478	0.0638	ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,LL0XNC01-237H1.2->chrX:102139342-102161086:+	NCIH841_LUNG	0.28	0.72	0.1116	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	LSMD1--VPS53	3	36	LSMD1	2175	chr17:7786553:-	VPS53	23981	chr17:559193:-	ONLY_REF_SPLICE	YES	54	82	0.42	0.32	0.0159	0.1913	LSMD1->chr17:7760003-7788556:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	NCIH841_LUNG	0.32	0.42	0.2072	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	PTMA--PTMS	11	0	PTMA	6053	chr2:232576686:+	PTMS	13737	chr12:6879102:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0585	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH841_LUNG	1	1	0.0585	TRUE	0	0	0	16	0	TRUE	ACH-000292
NCIH841_LUNG	SYCP2L--CASC15	8	4	SYCP2L	24854	chr6:10942979:+	CASC15	67207	chr6:22205414:+	ONLY_REF_SPLICE	YES	42	4	0.22	0.75	0.0425	0.0213	SYCP2L->chr6:10748027-10979553:+,synaptonemal_complex_protein_2_like,CASC15->cancer_susceptibility_candidate_15_(non-protein_coding),chr6:21665003-22214734:+	NCIH841_LUNG	0.22	0.75	0.0638	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	CCAT1--CASC8	5	15	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.0266	0.0797	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH841_LUNG	0.83	1	0.1063	TRUE	0	7	0	14	6	TRUE	ACH-000292
NCIH841_LUNG	CCDC144B--RP1-41C23.1	8	3	CCDC144B	1514	chr17:18528417:-	RP1-41C23.1	37167	chr17:29964404:+	ONLY_REF_SPLICE	YES	47	0	0.19	1	0.0425	0.0159	CCDC144B->chr17:18441117-18528930:-,coiled-coil_domain_containing_144B_(pseudogene),RP1-41C23.1->chr17:29910181-29964562:+	NCIH841_LUNG	0.19	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	CACNA2D1--ABCB1	7	1	CACNA2D1	1434	chr7:82072681:-	ABCB1	52043	chr7:87230394:-	ONLY_REF_SPLICE	YES	73	0	0.1	1	0.0372	0.0053	CACNA2D1->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_1,chr7:81575760-82073114:-,ABCB1->ATP_binding_cassette_subfamily_B_member_1,Oncogene{Bushman},chr7:87133175-87342611:-	NCIH841_LUNG	0.1	1	0.0425	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	CCAT1--CASC8	4	11	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	4	0	0.79	1	0.0213	0.0585	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH841_LUNG	0.79	1	0.0798	TRUE	0	26	0	18	24	TRUE	ACH-000292
NCIH841_LUNG	SMYD4--LSMD1	5	7	SMYD4	8952	chr17:1703544:-	LSMD1	23368	chr17:7762142:-	INCL_NON_REF_SPLICE	YES	95	30	0.11	0.29	0.0266	0.0372	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,LSMD1->chr17:7760003-7788556:-	NCIH841_LUNG	0.11	0.29	0.0638	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	DDAH1--RP11-458D21.1	6	2	DDAH1	4486	chr1:85987302:-	RP11-458D21.1	26057	chr1:145376692:-	INCL_NON_REF_SPLICE	YES	85	21	0.09	0.28	0.0319	0.0106	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,RP11-458D21.1->chr1:145373054-145382434:-	NCIH841_LUNG	0.09	0.28	0.0425	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	ZMYM4--ARL15	4	9	ZMYM4	4749	chr1:35825047:+	ARL15	39071	chr5:53409240:-	ONLY_REF_SPLICE	YES	171	44	0.07	0.23	0.0213	0.0478	ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-	NCIH841_LUNG	0.07	0.23	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	TMSB10--TMSB4X	6	0	TMSB10	1438	chr2:85133186:+	TMSB4X	6247	chrX:12994426:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	NCIH841_LUNG	1	1	0.0319	TRUE	0	1	0	17	1	TRUE	ACH-000292
NCIH841_LUNG	CTGF--RPS28	5	0	CTGF	1169	chr6:132272345:-	RPS28	7559	chr19:8386402:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	GTEx&tcga_normals:1/3694=0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH841_LUNG	1	1	0.0266	TRUE	0	0	0	5	0	TRUE	ACH-000292
NCIH841_LUNG	PCNX--DIAPH2	5	0	PCNX	49618	chr14:71576548:+	DIAPH2	85678	chrX:96638908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	PCNX->chr14:71374122-71582099:+,DIAPH2->chrX:95939662-96859996:+,diaphanous_related_formin_2	NCIH841_LUNG	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	SMYD4--LSMD1	4	4	SMYD4	8648	chr17:1703848:-	LSMD1	23368	chr17:7762142:-	INCL_NON_REF_SPLICE	YES	93	30	0.08	0.21	0.0213	0.0213	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,LSMD1->chr17:7760003-7788556:-	NCIH841_LUNG	0.08	0.21	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	ZNF217--BCAS1	4	2	ZNF217	2554	chr20:52224893:-	BCAS1	28031	chr20:52591969:-	ONLY_REF_SPLICE	YES	142	2	0.04	0.75	0.0213	0.0106	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	NCIH841_LUNG	0.04	0.75	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	NRG1--NRG1-IT2	3	3	NRG1	2344	chr8:31498245:+	NRG1-IT2	31143	chr8:32144617:+	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0159	0.0159	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT2->chr8:32028898-32145082:+	NCIH841_LUNG	0.67	1	0.0318	TRUE	0	2	0	3	2	TRUE	ACH-000292
NCIH841_LUNG	SPECC1--KCNJ12	3	1	SPECC1	28107	chr17:20163607:+	KCNJ12	42707	chr17:21311831:+	ONLY_REF_SPLICE	YES	33	6	0.11	0.4	0.0159	0.0053	SPECC1->Oncogene{Bushman},chr17:19912657-20222339:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1,KCNJ12->chr17:21279509-21323179:+,potassium_voltage-gated_channel_subfamily_J_member_12	NCIH841_LUNG	0.11	0.4	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	RP11-386M24.4--MKI67	3	0	RP11-386M24.4	1211	chr15:93277215:-	MKI67	9841	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RP11-386M24.4->chr15:93258989-93277425:-,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	NCIH841_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	BUB3--SPECC1L	2	0	BUB3	6355	chr10:124922344:+	SPECC1L	14168	chr22:24698163:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	BUB3->BUB3,_mitotic_checkpoint_protein,chr10:124913793-124924886:+,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	CDK13--POU6F2	2	0	CDK13	10205	chr7:40087476:+	POU6F2	39282	chr7:39413076:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,POU6F2->Oncogene{Bushman},POU_class_6_homeobox_2,chr7:39017598-39532694:+	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	CPSF6--HOXC5	2	0	CPSF6	11046	chr12:69656342:+	HOXC5	21319	chr12:54428062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,HOXC5->chr12:54426637-54429142:+,homeobox_C5	NCIH841_LUNG	1	1	0.0106	TRUE	0	3	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	DHCR7--GCA	2	0	DHCR7	9366	chr11:71148858:-	GCA	20577	chr2:163204088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	DHCR7->7-dehydrocholesterol_reductase,chr11:71139239-71163914:-,GCA->chr2:163175350-163228105:+,grancalcin	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	EDC3--FEM1B	2	0	EDC3	1413	chr15:74988221:-	FEM1B	22979	chr15:68581945:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,FEM1B->chr15:68570141-68588203:+,fem-1_homolog_B	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	EIF3E--THAP4	2	0	EIF3E	6301	chr8:109260842:-	THAP4	38695	chr2:242524140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E,THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	GTDC1--TTC21B	2	0	GTDC1	1130	chr2:145090006:-	TTC21B	45451	chr2:166789567:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,TTC21B->chr2:166713985-166810353:-,tetratricopeptide_repeat_domain_21B	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	ING3--IVNS1ABP	2	0	ING3	3654	chr7:120595678:+	IVNS1ABP	24881	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	{Klijn_CCL:Sarcomatoid=1},ING3->Oncogene{Bushman},chr7:120590803-120617270:+,inhibitor_of_growth_family_member_3,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH841_LUNG	1	1	0.0106	TRUE	0	1	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	KLHL23--SRSF1	2	0	KLHL23	2931	chr2:170554041:+	SRSF1	19693	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	KLHL23->chr2:170550998-170633499:+,kelch_like_family_member_23,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	NTN1--STX8	2	0	NTN1	4039	chr17:9066318:+	STX8	29316	chr17:9281970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:2=pct:0.6],Esophagus=[count:2=pct:0.5]},GTEx_v2:{count=20;pct=0.23%;dist=Esophagus_-_Muscularis=7,Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Aorta=2,Stomach=1,Breast_-_Mammary_Tissue=1,Uterus=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Brain_-_Cortex=1},LOCAL_INVERSION:+:-:[6471],NTN1->chr17:8924859-9147317:+,netrin_1,STX8->chr17:9153788-9479908:-,syntaxin_8	NCIH841_LUNG	1	1	0.0106	TRUE	1	4	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	POLR2J3--ZADH2	2	0	POLR2J3	5847	chr7:102207444:-	ZADH2	21915	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	SEMA3C--PTPRK	2	0	SEMA3C	2619	chr7:80548144:-	PTPRK	39458	chr6:128718833:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	SEMA3C->chr7:80371854-80551675:-,semaphorin_3C,PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	18	0	TRUE	ACH-000292
NCIH841_LUNG	SH3BGRL2--PHIP	2	0	SH3BGRL2	2410	chr6:80383516:+	PHIP	13439	chr6:79770535:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},SH3BGRL2->Oncogene{Bushman},SH3_domain_binding_glutamate_rich_protein_like_2,chr6:80341000-80413372:+,PHIP->Oncogene{Bushman},chr6:79645584-79787953:-,pleckstrin_homology_domain_interacting_protein	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	SUPT3H--SMCO2	2	0	SUPT3H	2744	chr6:45332938:-	SMCO2	31526	chr12:27654856:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	C1S--NPHP3	1	1	C1S	1111	chr12:7096461:+	NPHP3	20837	chr3:132438674:-	ONLY_REF_SPLICE	NO	7	43	0.22	0.04	0.0053	0.0053	C1S->chr12:7096351-7178336:+,complement_component_1,_s_subcomponent,NPHP3->chr3:132276986-132441303:-,nephronophthisis_3_(adolescent)	NCIH841_LUNG	0.04	0.22	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	DPH1--CCDC42	1	1	DPH1	1121	chr17:1933524:+	CCDC42	18228	chr17:8638929:-	ONLY_REF_SPLICE	YES	11	1	0.15	0.67	0.0053	0.0053	DPH1->Oncogene{Bushman},chr17:1933404-1946724:+,diphthamide_biosynthesis_1,CCDC42->chr17:8633252-8648537:-,coiled-coil_domain_containing_42	NCIH841_LUNG	0.15	0.67	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
SNU1105_CENTRAL_NERVOUS_SYSTEM	MAPK1--MAP7D1	33	6	MAPK1	1359	chr22:22221612:-	MAP7D1	25354	chr1:36636572:+	ONLY_REF_SPLICE	YES	18	74	0.68	0.35	0.4261	0.0775	MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1,MAP7D1->MAP7_domain_containing_1,chr1:36621180-36646450:+	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.35	0.68	0.5036	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	FOCAD--SLC24A2	19	6	FOCAD	12964	chr9:20770237:+	SLC24A2	64909	chr9:19622297:-	ONLY_REF_SPLICE	YES	13	0	0.66	1	0.2453	0.0775	FOCAD->chr9:20658308-20995954:+,focadhesin,SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.66	1	0.3228	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	SLC9B2--BANK1	17	4	SLC9B2	5471	chr4:103997341:-	BANK1	31259	chr4:102590560:+	ONLY_REF_SPLICE	YES	13	0	0.62	1	0.2195	0.0516	SLC9B2->chr4:103941025-104006986:-,solute_carrier_family_9_member_B2,BANK1->B-cell_scaffold_protein_with_ankyrin_repeats_1,chr4:102332443-102995969:+	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.62	1	0.2711	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	PAPSS2--LINC00864	17	2	PAPSS2	1396	chr10:89419765:+	LINC00864	20886	chr10:89157957:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2195	0.0258	PAPSS2->3'-phosphoadenosine_5'-phosphosulfate_synthase_2,chr10:89419370-89507462:+,LINC00864->chr10:89156780-89184549:-,long_intergenic_non-protein_coding_RNA_864	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.2453	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	CYR61--ACTB	12	0	CYR61	3134	chr1:86048577:+	ACTB	12895	chr7:5567955:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1549	0	GTEx&tcga_normals:3/3694=0.08%,CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.1549	TRUE	0	0	0	2	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	MYH9--SPP1	5	0	MYH9	25917	chr22:36696301:-	SPP1	44641	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0646	TRUE	0	0	0	2	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	THBS1--TAGLN2	5	0	THBS1	1093	chr15:39873372:+	TAGLN2	27637	chr1:159888329:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,TAGLN2->chr1:159887897-159895522:-,transgelin_2	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	EHMT1--ZMYND19	4	0	EHMT1	1058	chr9:140513501:+	ZMYND19	52851	chr9:140483170:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	LOCAL_INVERSION:+:-:[28502],EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,ZMYND19->chr9:140476531-140484942:-,zinc_finger_MYND-type_containing_19	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	LRFN5--SLC9B2	2	0	LRFN5	10004	chr14:42236232:+	SLC9B2	33132	chr4:103966153:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	LRFN5->chr14:42076773-42373752:+,leucine_rich_repeat_and_fibronectin_type_III_domain_containing_5,SLC9B2->chr4:103941025-104006986:-,solute_carrier_family_9_member_B2	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	PCBP1-AS1--MED16	2	0	PCBP1-AS1	32810	chr2:70215874:-	MED16	53121	chr19:871253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,MED16->chr19:867962-893218:-,mediator_complex_subunit_16	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	ACTA2--RP11-57C13.3	1	1	ACTA2	1452	chr10:90750696:-	RP11-57C13.3	16423	chr10:89382237:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0.0129	ACTA2->actin,_alpha_2,_smooth_muscle,_aorta,chr10:90694831-90751147:-,RP11-57C13.3->chr10:89369920-89419760:-	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	BRWD1--ZNF346	1	1	BRWD1	17607	chr21:40636386:-	ZNF346	61636	chr5:176477704:+	ONLY_REF_SPLICE	YES	12	19	0.14	0.1	0.0129	0.0129	BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.1	0.14	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	LYPLAL1--RRP15	1	1	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	NO	53	63	0.04	0.03	0.0129	0.0129	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.03	0.04	0.0258	TRUE	0	12	0	13	2	TRUE	ACH-000368
NCIH1385_LUNG	TIMM23B--RP11-175I17.2	107	28	TIMM23B	6950	chr10:51387763:+	RP11-175I17.2	16572	chr10:46358562:-	ONLY_REF_SPLICE	YES	0	10	1	0.93	1.1954	0.3128	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,RP11-175I17.2->chr10:46349541-46411619:-	NCIH1385_LUNG	0.93	1	1.5082	TRUE	0	16	0	2	16	TRUE	ACH-000737
NCIH1385_LUNG	RAB11B--ANGPTL4	106	2	RAB11B	1476	chr19:8455340:+	ANGPTL4	11657	chr19:8430838:+	ONLY_REF_SPLICE	YES	16	32	0.87	0.77	1.1842	0.0223	LOCAL_REARRANGEMENT:+:[15608],RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,ANGPTL4->angiopoietin_like_4,chr19:8428173-8439257:+	NCIH1385_LUNG	0.77	0.87	1.2065	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	LINC00969--XPO5	97	16	LINC00969	1104	chr3:195385036:+	XPO5	62493	chr6:43501744:-	ONLY_REF_SPLICE	YES	22	53	0.84	0.68	1.0837	0.1787	LINC00969->chr3:195384933-195460422:+,long_intergenic_non-protein_coding_RNA_969,XPO5->chr6:43490072-43543812:-,exportin_5	NCIH1385_LUNG	0.68	0.84	1.2624	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	GIT2--ORAI1	42	11	GIT2	13286	chr12:110397652:-	ORAI1	35814	chr12:122078947:+	ONLY_REF_SPLICE	YES	28	8	0.65	0.87	0.4692	0.1229	GIT2->GIT_ArfGAP_2,chr12:110367607-110434194:-,ORAI1->ORAI_calcium_release-activated_calcium_modulator_1,chr12:122064455-122080583:+	NCIH1385_LUNG	0.65	0.87	0.5921	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RPH3AL--FAM101B	30	3	RPH3AL	2444	chr17:202503:-	FAM101B	29953	chr17:295730:-	ONLY_REF_SPLICE	YES	20	0	0.62	1	0.3352	0.0335	LOCAL_REARRANGEMENT:-:[53724],RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B	NCIH1385_LUNG	0.62	1	0.3687	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RAB11B--ANGPTL4	28	7	RAB11B	1476	chr19:8455340:+	ANGPTL4	10223	chr19:8429090:+	ONLY_REF_SPLICE	YES	16	2	0.69	0.95	0.3128	0.0782	LOCAL_REARRANGEMENT:+:[15608],RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,ANGPTL4->angiopoietin_like_4,chr19:8428173-8439257:+	NCIH1385_LUNG	0.69	0.95	0.391	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RPH3AL--FAM101B	23	1	RPH3AL	1058	chr17:235988:-	FAM101B	29953	chr17:295730:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.2569	0.0112	LOCAL_REARRANGEMENT:-:[53724],RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B	NCIH1385_LUNG	0.96	1	0.2681	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	AHDC1--PSME3	19	10	AHDC1	2035	chr1:27929908:-	PSME3	20723	chr17:40986361:+	ONLY_REF_SPLICE	YES	10	300	0.74	0.09	0.2123	0.1117	AHDC1->AT-hook_DNA_binding_motif_containing_1,chr1:27860546-27930942:-,PSME3->chr17:40976402-40995774:+,proteasome_activator_subunit_3	NCIH1385_LUNG	0.09	0.74	0.324	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	SH3BP2--FAM193A	19	8	SH3BP2	13588	chr4:2824764:+	FAM193A	58213	chr4:2733502:+	ONLY_REF_SPLICE	YES	19	31	0.59	0.47	0.2123	0.0894	LOCAL_REARRANGEMENT:+:[60458],SH3BP2->Oncogene{Bushman},SH3_domain_binding_protein_2,chr4:2794750-2842825:+,FAM193A->chr4:2626988-2734292:+,family_with_sequence_similarity_193_member_A	NCIH1385_LUNG	0.47	0.59	0.3017	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	ANKHD1--CTB-131B5.5	16	4	ANKHD1	1460	chr5:139781858:+	CTB-131B5.5	47936	chr5:139544235:+	ONLY_REF_SPLICE	YES	40	2	0.33	0.91	0.1787	0.0447	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CTB-131B5.5->chr5:139536904-139552636:+	NCIH1385_LUNG	0.33	0.91	0.2234	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	GSE1--SLC7A5	16	0	GSE1	2365	chr16:85647004:+	SLC7A5	30231	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1787	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	NCIH1385_LUNG	1	1	0.1787	TRUE	0	0	0	3	0	TRUE	ACH-000737
NCIH1385_LUNG	RAB11B--ANGPTL4	14	7	RAB11B	1476	chr19:8455340:+	ANGPTL4	9791	chr19:8428658:+	ONLY_REF_SPLICE	YES	16	0	0.57	1	0.1564	0.0782	LOCAL_REARRANGEMENT:+:[15608],RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,ANGPTL4->angiopoietin_like_4,chr19:8428173-8439257:+	NCIH1385_LUNG	0.57	1	0.2346	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CRYL1--TPTE2	13	8	CRYL1	3312	chr13:21086582:-	TPTE2	23617	chr13:20039704:-	ONLY_REF_SPLICE	YES	30	2	0.41	0.91	0.1452	0.0894	CRYL1->chr13:20977806-21099996:-,crystallin_lambda_1,TPTE2->chr13:19997017-20110903:-,transmembrane_phosphoinositide_3-phosphatase_and_tensin_homolog_2	NCIH1385_LUNG	0.41	0.91	0.2346	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	SH3BP2--FAM193A	11	11	SH3BP2	15708	chr4:2826923:+	FAM193A	58213	chr4:2733502:+	ONLY_REF_SPLICE	YES	17	31	0.56	0.42	0.1229	0.1229	LOCAL_REARRANGEMENT:+:[60458],SH3BP2->Oncogene{Bushman},SH3_domain_binding_protein_2,chr4:2794750-2842825:+,FAM193A->chr4:2626988-2734292:+,family_with_sequence_similarity_193_member_A	NCIH1385_LUNG	0.42	0.56	0.2458	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CRYL1--TPTE2	10	13	CRYL1	3312	chr13:21086582:-	TPTE2	21335	chr13:20048215:-	ONLY_REF_SPLICE	YES	30	1	0.43	0.96	0.1117	0.1452	CRYL1->chr13:20977806-21099996:-,crystallin_lambda_1,TPTE2->chr13:19997017-20110903:-,transmembrane_phosphoinositide_3-phosphatase_and_tensin_homolog_2	NCIH1385_LUNG	0.43	0.96	0.2569	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	WDR35--MTA3	9	6	WDR35	25562	chr2:20132044:-	MTA3	51414	chr2:42922905:+	ONLY_REF_SPLICE	YES	19	77	0.44	0.16	0.1005	0.067	WDR35->WD_repeat_domain_35,chr2:20110021-20189892:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	NCIH1385_LUNG	0.16	0.44	0.1675	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RPS6KB1--VMP1	10	1	RPS6KB1	7326	chr17:57992064:+	VMP1	29276	chr17:57812699:+	ONLY_REF_SPLICE	YES	37	240	0.23	0.04	0.1117	0.0112	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH1385_LUNG	0.04	0.23	0.1229	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	USP34--CEACAM16	10	0	USP34	1120	chr2:61697785:-	CEACAM16	80583	chr19:45208860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1117	0	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CEACAM16->carcinoembryonic_antigen_related_cell_adhesion_molecule_16,chr19:45202421-45213986:+	NCIH1385_LUNG	1	1	0.1117	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CRYL1--TPTE2	8	5	CRYL1	3312	chr13:21086582:-	TPTE2	23863	chr13:20039458:-	ONLY_REF_SPLICE	YES	30	3	0.3	0.81	0.0894	0.0559	CRYL1->chr13:20977806-21099996:-,crystallin_lambda_1,TPTE2->chr13:19997017-20110903:-,transmembrane_phosphoinositide_3-phosphatase_and_tensin_homolog_2	NCIH1385_LUNG	0.3	0.81	0.1453	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	ORAI1--GIT2	8	1	ORAI1	1502	chr12:122064956:+	GIT2	21866	chr12:110391039:-	ONLY_REF_SPLICE	YES	7	28	0.56	0.24	0.0894	0.0112	ORAI1->ORAI_calcium_release-activated_calcium_modulator_1,chr12:122064455-122080583:+,GIT2->GIT_ArfGAP_2,chr12:110367607-110434194:-	NCIH1385_LUNG	0.24	0.56	0.1006	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CASC9--RP11-300E4.2	7	3	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	20	0	0.33	1	0.0782	0.0335	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH1385_LUNG	0.33	1	0.1117	TRUE	0	12	0	10	12	TRUE	ACH-000737
NCIH1385_LUNG	ACAP2--TTBK1	5	4	ACAP2	1284	chr3:195163524:-	TTBK1	43509	chr6:43220477:+	ONLY_REF_SPLICE	YES	19	0	0.32	1	0.0559	0.0447	ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,TTBK1->chr6:43211418-43255997:+,tau_tubulin_kinase_1	NCIH1385_LUNG	0.32	1	0.1006	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	ACAP2--TTBK1	5	4	ACAP2	1284	chr3:195163524:-	TTBK1	41230	chr6:43214345:+	ONLY_REF_SPLICE	YES	19	0	0.32	1	0.0559	0.0447	ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,TTBK1->chr6:43211418-43255997:+,tau_tubulin_kinase_1	NCIH1385_LUNG	0.32	1	0.1006	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	AHDC1--PSME3	2	15	AHDC1	2035	chr1:27929908:-	PSME3	16914	chr17:40977775:+	ONLY_REF_SPLICE	YES	10	0	0.63	1	0.0223	0.1676	AHDC1->AT-hook_DNA_binding_motif_containing_1,chr1:27860546-27930942:-,PSME3->chr17:40976402-40995774:+,proteasome_activator_subunit_3	NCIH1385_LUNG	0.63	1	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RAB11B--ANGPTL4	4	7	RAB11B	1476	chr19:8455340:+	ANGPTL4	9238	chr19:8428105:+	INCL_NON_REF_SPLICE	YES	16	0	0.41	1	0.0447	0.0782	LOCAL_REARRANGEMENT:+:[15608],RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,ANGPTL4->angiopoietin_like_4,chr19:8428173-8439257:+	NCIH1385_LUNG	0.41	1	0.1229	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	POLE--ANKLE2	5	1	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	19	145	0.24	0.04	0.0559	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	NCIH1385_LUNG	0.04	0.24	0.0671	TRUE	0	0	0	11	0	TRUE	ACH-000737
NCIH1385_LUNG	WDR35--MTA3	4	5	WDR35	25462	chr2:20132144:-	MTA3	51414	chr2:42922905:+	ONLY_REF_SPLICE	YES	19	77	0.32	0.1	0.0447	0.0559	WDR35->WD_repeat_domain_35,chr2:20110021-20189892:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	NCIH1385_LUNG	0.1	0.32	0.1006	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	AC004980.7--SRRM3	5	0	AC004980.7	2605	chr7:76180839:+	SRRM3	12327	chr7:75864346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0559	0	AC004980.7->chr7:76178677-76257299:+,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	NCIH1385_LUNG	1	1	0.0559	TRUE	0	2	0	2	2	TRUE	ACH-000737
NCIH1385_LUNG	ATP6AP1--TUBA1B	5	0	ATP6AP1	8142	chrX:153664119:+	TUBA1B	14419	chr12:49522647:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	ATP6AP1->ATPase_H+_transporting_accessory_protein_1,chrX:153656978-153664862:+,TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b	NCIH1385_LUNG	1	1	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	TIMM23B--RP11-175I17.2	2	12	TIMM23B	5839	chr10:51384357:+	RP11-175I17.2	16572	chr10:46358562:-	ONLY_REF_SPLICE	YES	35	10	0.29	0.58	0.0223	0.1341	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,RP11-175I17.2->chr10:46349541-46411619:-	NCIH1385_LUNG	0.29	0.58	0.1564	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RAB11B--ANGPTL4	3	7	RAB11B	1476	chr19:8455340:+	ANGPTL4	9794	chr19:8428661:+	ONLY_REF_SPLICE	YES	16	0	0.38	1	0.0335	0.0782	LOCAL_REARRANGEMENT:+:[15608],RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,ANGPTL4->angiopoietin_like_4,chr19:8428173-8439257:+	NCIH1385_LUNG	0.38	1	0.1117	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RALGAPA1--SLC25A21	3	6	RALGAPA1	17045	chr14:36194230:-	SLC25A21	62935	chr14:37344209:-	ONLY_REF_SPLICE	YES	10	1	0.47	0.9	0.0335	0.067	RALGAPA1->Ral_GTPase_activating_protein_catalytic_alpha_subunit_1,chr14:36007558-36278510:-,SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21	NCIH1385_LUNG	0.47	0.9	0.1005	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	TTC31--MATN3	4	2	TTC31	3973	chr2:74718491:+	MATN3	11782	chr2:20206071:-	INCL_NON_REF_SPLICE	YES	17	0	0.26	1	0.0447	0.0223	TTC31->chr2:74710200-74722013:+,tetratricopeptide_repeat_domain_31,MATN3->chr2:20191872-20212455:-,matrilin_3	NCIH1385_LUNG	0.26	1	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	DOK6--CCDC102B	4	1	DOK6	1256	chr18:67068546:+	CCDC102B	42253	chr18:66721267:+	ONLY_REF_SPLICE	YES	12	1	0.29	0.83	0.0447	0.0112	{Klijn_CCL:Lung=1},DOK6->chr18:67068291-67516323:+,docking_protein_6,CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B	NCIH1385_LUNG	0.29	0.83	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	HOXB3--HOXB9	4	0	HOXB3	2581	chr17:46667487:-	HOXB9	22377	chr17:46700497:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[16244],HOXB3->chr17:46626232-46682274:-,homeobox_B3,HOXB9->chr17:46698518-46703839:-,homeobox_B9	NCIH1385_LUNG	1	1	0.0447	TRUE	0	0	0	2	0	TRUE	ACH-000737
NCIH1385_LUNG	MICALL2--MAFK	4	0	MICALL2	1319	chr7:1498820:-	MAFK	23354	chr7:1578785:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[71212],MICALL2->MICAL_like_2,chr7:1468101-1499138:-,MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K	NCIH1385_LUNG	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RALGAPA1--SLC25A21	3	4	RALGAPA1	15894	chr14:36197568:-	SLC25A21	62935	chr14:37344209:-	ONLY_REF_SPLICE	YES	19	1	0.27	0.88	0.0335	0.0447	RALGAPA1->Ral_GTPase_activating_protein_catalytic_alpha_subunit_1,chr14:36007558-36278510:-,SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21	NCIH1385_LUNG	0.27	0.88	0.0782	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CRYL1--TPTE2	1	11	CRYL1	3312	chr13:21086582:-	TPTE2	22497	chr13:20041484:-	ONLY_REF_SPLICE	YES	30	2	0.29	0.86	0.0112	0.1229	CRYL1->chr13:20977806-21099996:-,crystallin_lambda_1,TPTE2->chr13:19997017-20110903:-,transmembrane_phosphoinositide_3-phosphatase_and_tensin_homolog_2	NCIH1385_LUNG	0.29	0.86	0.1341	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MUM1--MISP	3	3	MUM1	5601	chr19:1358463:+	MISP	28540	chr19:759909:+	ONLY_REF_SPLICE	YES	28	54	0.18	0.1	0.0335	0.0335	MUM1->chr19:1285890-1378430:+,melanoma_associated_antigen_(mutated)_1,MISP->chr19:751126-764319:+,mitotic_spindle_positioning	NCIH1385_LUNG	0.1	0.18	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RPH3AL--FAM101B	3	3	RPH3AL	2563	chr17:202384:-	FAM101B	29953	chr17:295730:-	ONLY_REF_SPLICE	YES	36	0	0.14	1	0.0335	0.0335	LOCAL_REARRANGEMENT:-:[53724],RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B	NCIH1385_LUNG	0.14	1	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-161I6.2--DYRK3	3	2	RP11-161I6.2	4277	chr18:2126201:-	DYRK3	21243	chr1:206856252:+	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0335	0.0223	RP11-161I6.2->chr18:1883525-2240847:-,DYRK3->chr1:206808881-206857764:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_3	NCIH1385_LUNG	0.25	1	0.0558	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	GIT2--ORAI1	2	5	GIT2	12174	chr12:110399083:-	ORAI1	35814	chr12:122078947:+	ONLY_REF_SPLICE	YES	29	8	0.19	0.47	0.0223	0.0559	GIT2->GIT_ArfGAP_2,chr12:110367607-110434194:-,ORAI1->ORAI_calcium_release-activated_calcium_modulator_1,chr12:122064455-122080583:+	NCIH1385_LUNG	0.19	0.47	0.0782	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	C7orf50--MAFK	3	0	C7orf50	3078	chr7:1166893:-	MAFK	19809	chr7:1578785:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K	NCIH1385_LUNG	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	GSE1--SLC7A5	3	0	GSE1	2365	chr16:85647004:+	SLC7A5	29105	chr16:87885455:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	NCIH1385_LUNG	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	HOXB3--HOXB9	3	0	HOXB3	1433	chr17:46681842:-	HOXB9	22377	chr17:46700497:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[16244],HOXB3->chr17:46626232-46682274:-,homeobox_B3,HOXB9->chr17:46698518-46703839:-,homeobox_B9	NCIH1385_LUNG	1	1	0.0335	TRUE	0	0	0	3	0	TRUE	ACH-000737
NCIH1385_LUNG	POLE--PGAM5	3	0	POLE	1112	chr12:133263840:-	PGAM5	42986	chr12:133291444:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_INVERSION:-:+:[23454],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	NCIH1385_LUNG	1	1	0.0335	TRUE	0	0	0	2	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-1379J22.5--UBE2D2	3	0	RP11-1379J22.5	1720	chr5:179085482:+	UBE2D2	10384	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	RP11-1379J22.5->chr5:179084763-179091433:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	NCIH1385_LUNG	1	1	0.0335	TRUE	0	5	0	5	2	TRUE	ACH-000737
NCIH1385_LUNG	TPPP--IRX2	3	0	TPPP	1118	chr5:693393:-	IRX2	14481	chr5:2749901:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	GTEx_FI:{Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein,IRX2->chr5:2745959-2752969:-,iroquois_homeobox_2	NCIH1385_LUNG	1	1	0.0335	TRUE	1	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	TTC31--MATN3	3	0	TTC31	3793	chr2:74718311:+	MATN3	11782	chr2:20206071:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	TTC31->chr2:74710200-74722013:+,tetratricopeptide_repeat_domain_31,MATN3->chr2:20191872-20212455:-,matrilin_3	NCIH1385_LUNG	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-161I6.2--DYRK3	2	2	RP11-161I6.2	5370	chr18:2111645:-	DYRK3	21243	chr1:206856252:+	ONLY_REF_SPLICE	YES	15	0	0.21	1	0.0223	0.0223	RP11-161I6.2->chr18:1883525-2240847:-,DYRK3->chr1:206808881-206857764:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_3	NCIH1385_LUNG	0.21	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	ANKHD1--CTB-131B5.5	2	1	ANKHD1	1460	chr5:139781858:+	CTB-131B5.5	50651	chr5:139546950:+	ONLY_REF_SPLICE	YES	40	1	0.07	0.75	0.0223	0.0112	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CTB-131B5.5->chr5:139536904-139552636:+	NCIH1385_LUNG	0.07	0.75	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	TPPP--IRX2	2	1	TPPP	2433	chr5:677865:-	IRX2	14481	chr5:2749901:-	ONLY_REF_SPLICE	YES	13	7	0.19	0.3	0.0223	0.0112	GTEx_FI:{Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein,IRX2->chr5:2745959-2752969:-,iroquois_homeobox_2	NCIH1385_LUNG	0.19	0.3	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	ATG4C--LRRC40	2	0	ATG4C	5588	chr1:63282479:+	LRRC40	27564	chr1:70625121:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	ATG4C->autophagy_related_4C_cysteine_peptidase,chr1:63249806-63331184:+,LRRC40->chr1:70610488-70671303:-,leucine_rich_repeat_containing_40	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CALCA--ULK3	2	0	CALCA	4479	chr11:14990372:-	ULK3	15549	chr15:75129776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	CALCA->Oncogene{Bushman},calcitonin_related_polypeptide_alpha,chr11:14988214-14993900:-,ULK3->chr15:75128457-75135687:-,unc-51_like_kinase_3	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CAPN10--RNPEPL1	2	0	CAPN10	2469	chr2:241528891:+	RNPEPL1	24188	chr2:241513932:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_REARRANGEMENT:+:[5344],CAPN10->calpain_10,chr2:241526133-241557122:+,RNPEPL1->arginyl_aminopeptidase_(aminopeptidase_B)-like_1,chr2:241505221-241520789:+	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CDH7--PMAIP1	2	0	CDH7	3305	chr18:63430288:+	PMAIP1	23266	chr18:57569879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	CDH7->cadherin_7,chr18:63417488-63548638:+,PMAIP1->chr18:57567180-57571538:+,phorbol-12-myristate-13-acetate-induced_protein_1	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	DCTN6--KAT6A	2	0	DCTN6	2175	chr8:30021691:+	KAT6A	14480	chr8:41906820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6,KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	DTNA--RAB12	2	0	DTNA	1225	chr18:32073478:+	RAB12	54438	chr18:8624936:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha,RAB12->RAB12,_member_RAS_oncogene_family,chr18:8609443-8639379:+	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	DTNA--ZNF24	2	0	DTNA	1225	chr18:32073478:+	ZNF24	56869	chr18:32920697:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha,ZNF24->chr18:32912176-32925446:-,zinc_finger_protein_24	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	2	0	TRUE	ACH-000737
NCIH1385_LUNG	INPP4B--KCNN1	2	0	INPP4B	33644	chr4:143181645:-	KCNN1	65577	chr19:18084617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,KCNN1->chr19:18062102-18110889:+,potassium_calcium-activated_channel_subfamily_N_member_1	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	JPH3--SLC7A5	2	0	JPH3	9150	chr16:87717872:+	SLC7A5	20389	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	JPH3->chr16:87635441-87731762:+,junctophilin_3,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MBOAT2--AC068542.1	2	0	MBOAT2	15820	chr2:9000743:-	AC068542.1	27260	chr2:115586449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	MBOAT2->chr2:8992820-9143942:-,membrane_bound_O-acyltransferase_domain_containing_2,AC068542.1->chr2:115586009-115591125:-	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	PCNXL2--CEP70	2	0	PCNXL2	1388	chr1:233431072:-	CEP70	59802	chr3:138251412:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	PCNXL2->chr1:233119181-233431459:-,CEP70->centrosomal_protein_70,chr3:138213186-138313380:-	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RNF126--BSG	2	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	NCIH1385_LUNG	1	1	0.0223	TRUE	0	2	0	12	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-1379J22.5--HSD17B14	2	0	RP11-1379J22.5	1720	chr5:179085482:+	HSD17B14	12002	chr19:49318398:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP11-1379J22.5->chr5:179084763-179091433:+,HSD17B14->chr19:49316274-49339935:-,hydroxysteroid_(17-beta)_dehydrogenase_14	NCIH1385_LUNG	1	1	0.0223	TRUE	0	1	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-161I6.2--DYRK3	2	0	RP11-161I6.2	2055	chr18:2239793:-	DYRK3	21243	chr1:206856252:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP11-161I6.2->chr18:1883525-2240847:-,DYRK3->chr1:206808881-206857764:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_3	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	18	0	TRUE	ACH-000737
NCIH1385_LUNG	SLC7A2--MTMR7	2	0	SLC7A2	2196	chr8:17359811:+	MTMR7	26147	chr8:17230749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_INVERSION:+:-:[83560],SLC7A2->chr8:17354597-17428082:+,solute_carrier_family_7_member_2,MTMR7->chr8:17155539-17271037:-,myotubularin_related_protein_7	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	SMARCA2--VLDLR	2	0	SMARCA2	1063	chr9:2015404:+	VLDLR	49175	chr9:2635453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	SMARCA2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_2,chr9:2015342-2193624:+,VLDLR->chr9:2621834-2660053:+,very_low_density_lipoprotein_receptor	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	SNAP47--DEGS1	2	0	SNAP47	1248	chr1:227916487:+	DEGS1	22353	chr1:224377279:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	SNAP47->chr1:227916240-227968927:+,synaptosome_associated_protein_47kDa,DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	TOMM40L--NDUFS2	2	0	TOMM40L	1134	chr1:161195926:+	NDUFS2	19348	chr1:161183439:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_REARRANGEMENT:+:[11608],TOMM40L->chr1:161195793-161200408:+,translocase_of_outer_mitochondrial_membrane_40_like,NDUFS2->NADH:ubiquinone_oxidoreductase_core_subunit_S2,chr1:161166894-161184185:+	NCIH1385_LUNG	1	1	0.0223	TRUE	0	2	0	2	0	TRUE	ACH-000737
NCIH1385_LUNG	YWHAE--ABR	2	0	YWHAE	1332	chr17:1303341:-	ABR	45102	chr17:916404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	YWHAE--ABR	2	0	YWHAE	1332	chr17:1303341:-	ABR	26806	chr17:1003975:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	4	0	TRUE	ACH-000737
NCIH1385_LUNG	ACAP2--TTBK1	1	3	ACAP2	1284	chr3:195163524:-	TTBK1	44338	chr6:43221306:+	ONLY_REF_SPLICE	YES	19	11	0.17	0.27	0.0112	0.0335	ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,TTBK1->chr6:43211418-43255997:+,tau_tubulin_kinase_1	NCIH1385_LUNG	0.17	0.27	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	ACAP2--TTBK1	1	3	ACAP2	1284	chr3:195163524:-	TTBK1	44061	chr6:43221029:+	ONLY_REF_SPLICE	YES	19	7	0.17	0.36	0.0112	0.0335	ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,TTBK1->chr6:43211418-43255997:+,tau_tubulin_kinase_1	NCIH1385_LUNG	0.17	0.36	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	AC084018.1--SETD1B	1	1	AC084018.1	3200	chr12:122239613:-	SETD1B	11893	chr12:122242630:+	ONLY_REF_SPLICE	YES	42	0	0.05	1	0.0112	0.0112	LOCAL_INVERSION:-:+:[274],AC084018.1->chr12:122233173-122241812:-,SETD1B->SET_domain_containing_1B,chr12:122242086-122270562:+	NCIH1385_LUNG	0.05	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	DOT1L--AC135048.13	1	1	DOT1L	8576	chr19:2194576:+	AC135048.13	38506	chr16:30964506:+	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0112	0.0112	DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,AC135048.13->chr16:30959707-30967832:+	NCIH1385_LUNG	0.11	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MAD1L1--MAFK	1	1	MAD1L1	19401	chr7:2188787:-	MAFK	45880	chr7:1578785:+	ONLY_REF_SPLICE	YES	20	4	0.09	0.33	0.0112	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K	NCIH1385_LUNG	0.09	0.33	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MAD1L1--MAFK	1	1	MAD1L1	26516	chr7:2108829:-	MAFK	45880	chr7:1578785:+	ONLY_REF_SPLICE	YES	15	4	0.12	0.33	0.0112	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K	NCIH1385_LUNG	0.12	0.33	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	NOC4L--RP5-882C2.2	1	1	NOC4L	5448	chr12:132633440:+	RP5-882C2.2	12147	chr17:42299830:+	ONLY_REF_SPLICE	YES	44	1	0.04	0.67	0.0112	0.0112	NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,RP5-882C2.2->chr17:42298769-42301078:+	NCIH1385_LUNG	0.04	0.67	0.0224	TRUE	0	0	0	2	0	TRUE	ACH-000737
NCIH1385_LUNG	RNF216P1--FOXK1	1	1	RNF216P1	1174	chr7:5013792:+	FOXK1	23815	chr7:4780469:+	ONLY_REF_SPLICE	YES	12	30	0.14	0.06	0.0112	0.0112	RNF216P1->chr7:5013619-5080306:+,ring_finger_protein_216_pseudogene_1,FOXK1->chr7:4683388-4811074:+,forkhead_box_K1	NCIH1385_LUNG	0.06	0.14	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-386G11.10--DMKN	1	1	RP11-386G11.10	2083	chr12:49522647:+	DMKN	7961	chr19:36004560:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0112	0.0112	RP11-386G11.10->chr12:49521565-49541652:+,DMKN->chr19:35988122-36004560:-,dermokine	NCIH1385_LUNG	0.33	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	SLC10A4--SLAIN2	1	1	SLC10A4	2800	chr4:48487159:+	SLAIN2	9378	chr4:48371866:+	ONLY_REF_SPLICE	NO	1	17	0.67	0.11	0.0112	0.0112	LOCAL_REARRANGEMENT:+:[57131],SLC10A4->chr4:48485360-48491213:+,solute_carrier_family_10_member_4,SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+	NCIH1385_LUNG	0.11	0.67	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	TMEM18--SH3YL1	1	1	TMEM18	1151	chr2:677289:-	SH3YL1	20991	chr2:253115:-	ONLY_REF_SPLICE	YES	49	4	0.04	0.33	0.0112	0.0112	TMEM18->chr2:667335-677439:-,transmembrane_protein_18,SH3YL1->SH3_and_SYLF_domain_containing_1,chr2:217730-266398:-	NCIH1385_LUNG	0.04	0.33	0.0224	TRUE	1	1	0	2	0	TRUE	ACH-000737
UMUC1_URINARY_TRACT	LAMC1--MED13	4	0	LAMC1	9460	chr1:183085770:+	MED13	69840	chr17:60020100:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1,MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13	UMUC1_URINARY_TRACT	1	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	TSPAN15--HKDC1	4	0	TSPAN15	1218	chr10:71211446:+	HKDC1	25529	chr10:71016792:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	TSPAN15->chr10:71211229-71267425:+,tetraspanin_15,HKDC1->chr10:70980059-71027315:+,hexokinase_domain_containing_1	UMUC1_URINARY_TRACT	1	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	STX3--ATP5A1	2	6	STX3	11078	chr11:59560987:+	ATP5A1	27472	chr18:43675097:-	ONLY_REF_SPLICE	NO	6	70	0.57	0.1	0.0325	0.0976	{Klijn_CCL:Urinary_Bladder=1},STX3->chr11:59480929-59573354:+,syntaxin_3,ATP5A1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_alpha_subunit_1,_cardiac_muscle,chr18:43664110-43684300:-	UMUC1_URINARY_TRACT	0.1	0.57	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	CTA-384D8.36--MMP2	3	0	CTA-384D8.36	1656	chr22:50963010:+	MMP2	17629	chr16:55525810:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	CTA-384D8.36->chr22:50962355-50963209:+,MMP2->Oncogene{Bushman},chr16:55423612-55540603:+,matrix_metallopeptidase_2	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	GJB2--YBX3	3	0	GJB2	1081	chr13:20766957:-	YBX3	7520	chr12:10875819:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	GJB2->chr13:20761609-20767037:-,gap_junction_protein_beta_2,YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	MAST4--CNOT6	3	0	MAST4	50348	chr5:66461467:+	CNOT6	63042	chr5:179991495:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	MAST4->chr5:65892176-66465423:+,microtubule_associated_serine/threonine_kinase_family_member_4,CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	MCM5--TAGLN2	3	0	MCM5	16934	chr22:35817453:+	TAGLN2	27202	chr1:159890327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0488	0	MCM5->Oncogene{Bushman},chr22:35796056-35821423:+,minichromosome_maintenance_complex_component_5,TAGLN2->chr1:159887897-159895522:-,transgelin_2	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	MIR31HG--B4GALT1	3	0	MIR31HG	1181	chr9:21559488:-	B4GALT1	8478	chr9:33135422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0488	0	MIR31HG->MIR31_host_gene,chr9:21455641-21559668:-,B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	NPM1P27--ERRFI1	3	0	NPM1P27	1347	chr5:93019027:-	ERRFI1	8631	chr1:8073103:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	NPM1P27->chr5:93018544-93019373:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_27,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	OBFC1--PILRB	3	0	OBFC1	10958	chr10:105642420:-	PILRB	24606	chr7:99954404:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	OBFC1->chr10:105642300-105677963:-,oligonucleotide/oligosaccharide_binding_fold_containing_1,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	PLXNB2--MYH14	3	0	PLXNB2	15198	chr22:50718080:-	MYH14	53638	chr19:50781360:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	PLXNB2->chr22:50713408-50746056:-,plexin_B2,MYH14->chr19:50691443-50813802:+,myosin,_heavy_chain_14,_non-muscle	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	PMEPA1--PDE9A	3	0	PMEPA1	9176	chr20:56227616:-	PDE9A	35163	chr21:44182266:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	PMEPA1->Oncogene{Bushman},chr20:56223448-56286592:-,prostate_transmembrane_protein,_androgen_induced_1,PDE9A->chr21:44073746-44195619:+,phosphodiesterase_9A	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	RP11-982M15.2--EEF1A1P6	3	0	RP11-982M15.2	1670	chr14:105236355:+	EEF1A1P6	5680	chr7:22550862:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	RP11-982M15.2->chr14:105235686-105236608:+,EEF1A1P6->chr7:22550231-22551618:-,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_6	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	SPINT2--ITGB4	3	0	SPINT2	9769	chr19:38782824:+	ITGB4	24347	chr17:73733656:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	TSPAN12--HOOK2	3	0	TSPAN12	1170	chr7:120498287:-	HOOK2	18271	chr19:12903237:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	TSPAN12->chr7:120427376-120498456:-,tetraspanin_12,HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	ACSL4--COL4A5	2	0	ACSL4	1265	chrX:108976368:-	COL4A5	34863	chrX:107814643:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	ACSL4->acyl-CoA_synthetase_long-chain_family_member_4,chrX:108867473-108976632:-,COL4A5->chrX:107683074-107940775:+,collagen_type_IV_alpha_5	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	CDC42EP4--PGS1	2	0	CDC42EP4	1283	chr17:71308032:-	PGS1	22962	chr17:76410960:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	CDC42EP4->CDC42_effector_protein_4,chr17:71279763-71308314:-,PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	CDR2--SP1	2	0	CDR2	8528	chr16:22433482:-	SP1	20567	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	CDR2->cerebellar_degeneration_related_protein_2,chr16:22357257-22448486:-,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	EPHA1--GSTK1	2	0	EPHA1	10035	chr7:143091901:-	GSTK1	22164	chr7:142965881:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	EPHA1->EPH_receptor_A1,Oncogene{Bushman},chr7:143087382-143105985:-,GSTK1->chr7:142941186-142967947:+,glutathione_S-transferase_kappa_1	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	MAP3K13--VPS8	2	0	MAP3K13	2430	chr3:185003431:+	VPS8	92551	chr3:184766267:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	MIR205HG--GANAB	2	0	MIR205HG	1589	chr1:209602753:+	GANAB	13430	chr11:62400217:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	PCIF1--ADRM1	2	0	PCIF1	8269	chr20:44573669:+	ADRM1	17748	chr20:60881253:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	PCIF1->PDX1_C-terminal_inhibiting_factor_1,chr20:44563267-44576662:+,ADRM1->adhesion_regulating_molecule_1,chr20:60877149-60883918:+	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	RP11-65J3.1--SUPT3H	2	0	RP11-65J3.1	4703	chr9:132101196:+	SUPT3H	28426	chr6:44797594:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	RP11-65J3.1->chr9:132094579-132121817:+,SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	TALDO1--ASNS	2	0	TALDO1	1250	chr11:747578:+	ASNS	19414	chr7:97488267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	TALDO1->chr11:747329-765024:+,transaldolase_1,ASNS->Oncogene{Bushman},asparagine_synthetase_(glutamine-hydrolyzing),chr7:97481430-97501854:-	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	TM9SF4--C1orf63	2	0	TM9SF4	2648	chr20:30720929:+	C1orf63	37792	chr1:25570124:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	TM9SF4->chr20:30697309-30755061:+,transmembrane_9_superfamily_member_4,C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	TNIK--NCEH1	2	0	TNIK	1402	chr3:171177796:-	NCEH1	46439	chr3:172365904:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	TNIK->TRAF2_and_NCK_interacting_kinase,chr3:170779128-171178197:-,NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	YKT6--NUP93	2	0	YKT6	5169	chr7:44247797:+	NUP93	40455	chr16:56878411:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	YKT6->YKT6_v-SNARE_homolog_(S._cerevisiae),chr7:44240567-44253893:+,NUP93->ArcherDX_panel,FoundationOne_panel,chr16:56764017-56878797:+,nucleoporin_93kDa	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	SLC25A36--WDR72	1	1	SLC25A36	5624	chr3:140682069:+	WDR72	45453	chr15:53815519:-	ONLY_REF_SPLICE	YES	3	15	0.4	0.12	0.0163	0.0163	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-	UMUC1_URINARY_TRACT	0.12	0.4	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000834
LS513_LARGE_INTESTINE	LUZP1--TMCO4	60	7	LUZP1	2577	chr1:23495259:-	TMCO4	38383	chr1:20009937:-	ONLY_REF_SPLICE	YES	1	61	0.99	0.52	0.6671	0.0778	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,TMCO4->chr1:20008706-20126438:-,transmembrane_and_coiled-coil_domains_4	LS513_LARGE_INTESTINE	0.52	0.99	0.7449	TRUE	0	0	0	2	0	TRUE	ACH-000007
LS513_LARGE_INTESTINE	IQGAP1--FAM174B	50	43	IQGAP1	2279	chr15:90934105:+	FAM174B	56743	chr15:93173575:-	ONLY_REF_SPLICE	YES	285	12	0.25	0.89	0.5559	0.4781	IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,FAM174B->chr15:93160673-93353114:-,family_with_sequence_similarity_174_member_B	LS513_LARGE_INTESTINE	0.25	0.89	1.034	TRUE	0	0	0	2	0	TRUE	ACH-000007
LS513_LARGE_INTESTINE	LRBA--SH3D19	8	6	LRBA	38254	chr4:151682935:-	SH3D19	88953	chr4:152070713:-	ONLY_REF_SPLICE	YES	117	256	0.11	0.05	0.0889	0.0667	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},YOSHIHARA_TCGA_num_samples[BLCA:1|HNSC:1|LUSC:1],{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[87024],LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,SH3D19->SH3_domain_containing_19,chr4:152023903-152246784:-	LS513_LARGE_INTESTINE	0.05	0.11	0.1556	TRUE	0	4	0	2	4	TRUE	ACH-000007
LS513_LARGE_INTESTINE	SURF4--RPLP1	3	0	SURF4	7220	chr9:136229378:-	RPLP1	11318	chr15:69745167:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	SURF4->chr9:136228325-136242970:-,surfeit_4,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	LS513_LARGE_INTESTINE	1	1	0.0334	TRUE	0	0	0	4	0	TRUE	ACH-000007
LS513_LARGE_INTESTINE	MED10--HSD17B4	2	0	MED10	4159	chr5:6374437:-	HSD17B4	30378	chr5:118860911:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	MED10->chr5:6371994-6378707:-,mediator_complex_subunit_10,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	LS513_LARGE_INTESTINE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000007
LS513_LARGE_INTESTINE	MST1R--LAMTOR4	2	0	MST1R	4700	chr3:49935484:-	LAMTOR4	17866	chr7:99751023:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	MST1R->Oncogene{Bushman},chr3:49924435-49941299:-,macrophage_stimulating_1_receptor,LAMTOR4->chr7:99746530-99753567:+,late_endosomal/lysosomal_adaptor,_MAPK_and_MTOR_activator_4	LS513_LARGE_INTESTINE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000007
LS513_LARGE_INTESTINE	RPS3--MKI67	2	0	RPS3	2292	chr11:75111821:+	MKI67	16082	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	LS513_LARGE_INTESTINE	1	1	0.0222	TRUE	0	0	0	4	0	TRUE	ACH-000007
LS513_LARGE_INTESTINE	UBAC2--TM9SF2	2	0	UBAC2	1166	chr13:99853193:+	TM9SF2	23444	chr13:100169868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,TM9SF2->chr13:100153671-100216260:+,transmembrane_9_superfamily_member_2	LS513_LARGE_INTESTINE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000007
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PUM1--RP11-26E5.1	114	45	PUM1	7284	chr1:31479841:-	RP11-26E5.1	34527	chr8:130452220:+	ONLY_REF_SPLICE	YES	56	0	0.74	1	1.6913	0.6676	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,RP11-26E5.1->chr8:130428195-130458098:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	2.3589	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	74	46	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	35	0	0.77	1	1.0979	0.6825	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	1.7804	TRUE	0	2	1	16	2	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	55	14	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	0	32	1	0.68	0.816	0.2077	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	1.0237	TRUE	0	2	0	9	2	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PUM1--RP11-26E5.1	41	24	PUM1	6137	chr1:31501643:-	RP11-26E5.1	34527	chr8:130452220:+	ONLY_REF_SPLICE	YES	102	0	0.39	1	0.6083	0.3561	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,RP11-26E5.1->chr8:130428195-130458098:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.9644	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAML3--FAF1	17	2	MAML3	2325	chr4:141074014:-	FAF1	39783	chr1:50907195:-	ONLY_REF_SPLICE	YES	1	114	0.95	0.14	0.2522	0.0297	MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.95	0.2819	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PUM1--RP11-26E5.1	1	45	PUM1	8425	chr1:31478700:-	RP11-26E5.1	34527	chr8:130452220:+	ONLY_REF_SPLICE	NO	39	0	0.54	1	0.0148	0.6676	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,RP11-26E5.1->chr8:130428195-130458098:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	0.6824	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	4	28	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	26	0	0.55	1	0.0593	0.4154	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.4747	TRUE	0	2	1	16	2	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYNLRB1--FRG1	4	0	DYNLRB1	6082	chr20:33122599:+	FRG1	13470	chr4:190864357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	DYNLRB1->chr20:33104214-33128762:+,dynein_light_chain_roadblock-type_1,FRG1->FSHD_region_gene_1,chr4:190861943-190884359:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NSMCE2--ZNF341	4	0	NSMCE2	3820	chr8:126114729:+	ZNF341	27864	chr20:32354657:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+,ZNF341->chr20:32319463-32380075:+,zinc_finger_protein_341	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NSMCE2--ZNF341	4	0	NSMCE2	3820	chr8:126114729:+	ZNF341	26670	chr20:32349668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+,ZNF341->chr20:32319463-32380075:+,zinc_finger_protein_341	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA2B--CBS	3	0	ITGA2B	9912	chr17:42454377:-	CBS	37101	chr21:44474093:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0445	0	ITGA2B->chr17:42449548-42466873:-,integrin_subunit_alpha_2b,CBS->chr21:44473301-44497053:-,cystathionine-beta-synthase	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0445	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMCC3--USP44	1	1	TMCC3	1210	chr12:95044129:-	USP44	22382	chr12:95928102:-	ONLY_REF_SPLICE	YES	3	6	0.4	0.25	0.0148	0.0148	TMCC3->chr12:94960900-95044338:-,transmembrane_and_coiled-coil_domain_family_3,USP44->chr12:95910336-95945266:-,ubiquitin_specific_peptidase_44	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.4	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000326
NCIH1755_LUNG	FAM102B--UQCC1	623	142	FAM102B	1477	chr1:109103187:+	UQCC1	32350	chr20:33935075:-	ONLY_REF_SPLICE	YES	8	70	0.99	0.92	6.0711	1.3838	FAM102B->chr1:109102711-109187522:+,family_with_sequence_similarity_102_member_B,UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1	NCIH1755_LUNG	0.92	0.99	7.4549	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	PYROXD1--CCDC91	148	72	PYROXD1	3005	chr12:21593382:+	CCDC91	42855	chr12:28603094:+	ONLY_REF_SPLICE	YES	37	46	0.86	0.83	1.4422	0.7016	PYROXD1->chr12:21590549-21623300:+,pyridine_nucleotide-disulphide_oxidoreductase_domain_1,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NCIH1755_LUNG	0.83	0.86	2.1438	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	UBE2N--GPR182	79	1	UBE2N	1408	chr12:93835631:-	GPR182	12749	chr12:57388270:+	INCL_NON_REF_SPLICE	YES	21	0	0.79	1	0.7698	0.0097	UBE2N->chr12:93799449-93836038:-,ubiquitin_conjugating_enzyme_E2_N,GPR182->G_protein-coupled_receptor_182,chr12:57388230-57390468:+	NCIH1755_LUNG	0.79	1	0.7795	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	TBCD--FN3KRP	51	15	TBCD	20005	chr17:80842078:+	FN3KRP	56543	chr17:80676782:+	ONLY_REF_SPLICE	YES	74	184	0.47	0.26	0.497	0.1462	LOCAL_REARRANGEMENT:+:[21736],TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D,FN3KRP->chr17:80674559-80688204:+,fructosamine_3_kinase_related_protein	NCIH1755_LUNG	0.26	0.47	0.6432	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	DYNLRB1--RP11-782C8.2	52	0	DYNLRB1	1053	chr20:33104266:+	RP11-782C8.2	20527	chr1:143188628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5067	0	DYNLRB1->chr20:33104214-33128762:+,dynein_light_chain_roadblock-type_1,RP11-782C8.2->chr1:143118704-143211070:-	NCIH1755_LUNG	1	1	0.5067	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	MYH9--RP11-6B19.2	46	14	MYH9	27169	chr22:36694965:-	RP11-6B19.2	45688	chr12:15970044:-	ONLY_REF_SPLICE	YES	583	0	0.09	1	0.4483	0.1364	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,RP11-6B19.2->chr12:15966427-15981208:-	NCIH1755_LUNG	0.09	1	0.5847	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	PTK2--RP11-809O17.1	28	7	PTK2	2092	chr8:142011224:-	RP11-809O17.1	67687	chr8:142136570:-	ONLY_REF_SPLICE	YES	94	2	0.27	0.95	0.2729	0.0682	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,RP11-809O17.1->chr8:142136143-142140060:-	NCIH1755_LUNG	0.27	0.95	0.3411	TRUE	0	3	0	1	3	TRUE	ACH-000282
NCIH1755_LUNG	PYROXD1--CCDC91	9	76	PYROXD1	3005	chr12:21593382:+	CCDC91	41670	chr12:28565687:+	ONLY_REF_SPLICE	YES	37	42	0.7	0.67	0.0877	0.7406	PYROXD1->chr12:21590549-21623300:+,pyridine_nucleotide-disulphide_oxidoreductase_domain_1,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NCIH1755_LUNG	0.67	0.7	0.8283	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	PYROXD1--CCDC91	3	73	PYROXD1	3005	chr12:21593382:+	CCDC91	41775	chr12:28565792:+	INCL_NON_REF_SPLICE	YES	37	43	0.67	0.64	0.0292	0.7114	PYROXD1->chr12:21590549-21623300:+,pyridine_nucleotide-disulphide_oxidoreductase_domain_1,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NCIH1755_LUNG	0.64	0.67	0.7406	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	DYNLRB1--RP11-782C8.2	18	0	DYNLRB1	1053	chr20:33104266:+	RP11-782C8.2	21976	chr1:143186607:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1754	0	DYNLRB1->chr20:33104214-33128762:+,dynein_light_chain_roadblock-type_1,RP11-782C8.2->chr1:143118704-143211070:-	NCIH1755_LUNG	1	1	0.1754	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	FAM102B--UQCC1	7	20	FAM102B	1477	chr1:109103187:+	UQCC1	37184	chr20:33902568:-	ONLY_REF_SPLICE	YES	8	52	0.77	0.34	0.0682	0.1949	FAM102B->chr1:109102711-109187522:+,family_with_sequence_similarity_102_member_B,UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1	NCIH1755_LUNG	0.34	0.77	0.2631	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	PTK2--RP11-809O17.1	9	7	PTK2	2092	chr8:142011224:-	RP11-809O17.1	65464	chr8:142139904:-	INCL_NON_REF_SPLICE	YES	94	0	0.15	1	0.0877	0.0682	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,RP11-809O17.1->chr8:142136143-142140060:-	NCIH1755_LUNG	0.15	1	0.1559	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	LRBA--CYP4F59P	10	1	LRBA	2301	chr4:151935579:-	CYP4F59P	75785	chr9:43027965:-	ONLY_REF_SPLICE	YES	24	0	0.31	1	0.0974	0.0097	LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,CYP4F59P->chr9:43027748-43032877:-,cytochrome_P450_family_4_subfamily_F_member_59,_pseudogene	NCIH1755_LUNG	0.31	1	0.1071	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	EEA1--TESPA1	10	0	EEA1	3493	chr12:93285405:-	TESPA1	44781	chr12:55368391:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0974	0	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,TESPA1->chr12:55341802-55378530:-,thymocyte_expressed,_positive_selection_associated_1	NCIH1755_LUNG	1	1	0.0974	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	PYROXD1--CCDC91	2	32	PYROXD1	1200	chr12:21590748:+	CCDC91	42855	chr12:28603094:+	ONLY_REF_SPLICE	YES	27	46	0.56	0.42	0.0195	0.3118	PYROXD1->chr12:21590549-21623300:+,pyridine_nucleotide-disulphide_oxidoreductase_domain_1,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NCIH1755_LUNG	0.42	0.56	0.3313	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	SLC12A6--GOLGA8A	10	0	SLC12A6	2651	chr15:34628611:-	GOLGA8A	31347	chr15:34846157:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0974	0	LOCAL_REARRANGEMENT:-:[41008],SLC12A6->chr15:34525460-34630261:-,solute_carrier_family_12_member_6,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	NCIH1755_LUNG	1	1	0.0974	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	LMO4--ZNF7	7	5	LMO4	3802	chr1:87797934:+	ZNF7	21830	chr8:146062776:+	ONLY_REF_SPLICE	YES	51	56	0.19	0.18	0.0682	0.0487	LMO4->LIM_domain_only_4,chr1:87794151-87814606:+,ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7	NCIH1755_LUNG	0.18	0.19	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	SLC12A6--GOLGA8A	8	0	SLC12A6	2651	chr15:34628611:-	GOLGA8A	41938	chr15:34699936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.078	0	LOCAL_REARRANGEMENT:-:[41008],SLC12A6->chr15:34525460-34630261:-,solute_carrier_family_12_member_6,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	NCIH1755_LUNG	1	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	FAM107B--UPF2	6	2	FAM107B	1645	chr10:14816252:-	UPF2	38569	chr10:12009453:-	ONLY_REF_SPLICE	YES	0	10	1	0.44	0.0585	0.0195	FAM107B->chr10:14560556-14816896:-,family_with_sequence_similarity_107_member_B,UPF2->UPF2_regulator_of_nonsense_transcripts_homolog_(yeast),chr10:11962021-12085169:-	NCIH1755_LUNG	0.44	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	USP7--MLKL	6	1	USP7	8404	chr16:9024150:-	MLKL	44015	chr16:74712878:-	ONLY_REF_SPLICE	YES	80	15	0.08	0.32	0.0585	0.0097	USP7->Oncogene{Bushman},chr16:8985951-9058371:-,ubiquitin_specific_peptidase_7_(herpes_virus-associated),MLKL->chr16:74705753-74734858:-,mixed_lineage_kinase_domain-like	NCIH1755_LUNG	0.08	0.32	0.0682	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	NPC2--RP11-562L8.1	5	1	NPC2	1985	chr14:74959896:-	RP11-562L8.1	11260	chr14:29850470:-	INCL_NON_REF_SPLICE	YES	117	0	0.05	1	0.0487	0.0097	NPC2->NPC_intracellular_cholesterol_transporter_2,chr14:74942895-74960880:-,RP11-562L8.1->chr14:29734031-29850501:-	NCIH1755_LUNG	0.05	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	PKD1L2--CNTNAP4	4	0	PKD1L2	45304	chr16:81161366:-	CNTNAP4	62947	chr16:76350310:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	PKD1L2->chr16:81134480-81253975:-,polycystin_1_like_2_(gene/pseudogene),CNTNAP4->chr16:76311176-76593135:+,contactin_associated_protein_like_4	NCIH1755_LUNG	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	CTC-786C10.1--RP11-166B2.1	3	0	CTC-786C10.1	1532	chr16:85205413:+	RP11-166B2.1	14004	chr16:12023302:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	CTC-786C10.1->chr16:85204882-85218969:+,RP11-166B2.1->chr16:12021230-12070500:-	NCIH1755_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	PTK2--RP11-809O17.1	1	7	PTK2	3651	chr8:141993941:-	RP11-809O17.1	67687	chr8:142136570:-	ONLY_REF_SPLICE	YES	135	2	0.06	0.8	0.0097	0.0682	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,RP11-809O17.1->chr8:142136143-142140060:-	NCIH1755_LUNG	0.06	0.8	0.0779	TRUE	0	1	0	1	1	TRUE	ACH-000282
NCIH1755_LUNG	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0.0097	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH1755_LUNG	1	1	0.0292	TRUE	0	6	0	6	6	TRUE	ACH-000282
NCIH1755_LUNG	FBXO34--CTD-3006G17.2	2	0	FBXO34	1235	chr14:55738255:+	CTD-3006G17.2	20214	chr14:27729088:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CTD-3006G17.2->chr14:27727923-28314492:-	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	HECW1--BIRC6	2	0	HECW1	9383	chr7:43360341:+	BIRC6	120692	chr2:32800223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	HECW1->HECT,_C2_and_WW_domain_containing_E3_ubiquitin_protein_ligase_1,chr7:43152198-43605600:+,BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	HS2ST1--SEP15	2	0	HS2ST1	1513	chr1:87380843:+	SEP15	26013	chr1:87369131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	NCIH1755_LUNG	1	1	0.0195	TRUE	0	2	0	9	0	TRUE	ACH-000282
NCIH1755_LUNG	PHF20--ATP11A	2	0	PHF20	4583	chr20:34389527:+	ATP11A	58533	chr13:113508593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	PTBP3--PTGR1	2	0	PTBP3	1198	chr9:115095750:-	PTGR1	31030	chr9:114348445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	3	0	TRUE	ACH-000282
NCIH1755_LUNG	RP11-435B5.4--TMED2	2	0	RP11-435B5.4	2843	chr1:143465380:-	TMED2	21814	chr12:124071294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	RP11-435B5.4->chr1:143354963-143467632:-,TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	SERPINB6--THOC2	2	0	SERPINB6	5681	chr6:2959402:-	THOC2	23118	chrX:122802165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	SERPINB6->chr6:2948393-2972090:-,serpin_family_B_member_6,THOC2->THO_complex_2,chrX:122734412-122866906:-	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	WAC--RAB18	2	0	WAC	4265	chr10:28824686:+	RAB18	32254	chr10:27815757:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	GTEx&tcga_normals:1/3694=0.03%,WAC->WW_domain_containing_adaptor_with_coiled-coil,chr10:28821422-28912041:+,RAB18->RAB18,_member_RAS_oncogene_family,chr10:27793197-27831143:+	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0097	0.0097	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH1755_LUNG	1	1	0.0194	TRUE	0	6	0	7	6	TRUE	ACH-000282
HS698T_FIBROBLAST	GTF2A2--ANXA2	9	0	GTF2A2	1136	chr15:59949605:-	ANXA2	22041	chr15:60678285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1195	0	GTF2A2->chr15:59930261-59949740:-,general_transcription_factor_IIA_subunit_2,ANXA2->annexin_A2,chr15:60639333-60695082:-	HS698T_FIBROBLAST	1	1	0.1195	TRUE	0	0	0	1	0	TRUE	ACH-000850
HS698T_FIBROBLAST	COL1A1--COL7A1	4	0	COL1A1	5797	chr17:48273978:-	COL7A1	37770	chr3:48617056:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	HS698T_FIBROBLAST	1	1	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000850
HS698T_FIBROBLAST	COL1A1--COL7A1	3	0	COL1A1	10573	chr17:48269202:-	COL7A1	33641	chr3:48621185:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	HS698T_FIBROBLAST	1	1	0.0398	TRUE	0	0	0	1	0	TRUE	ACH-000850
HS698T_FIBROBLAST	PEAK1--UBE2Q2	3	0	PEAK1	1139	chr15:77712348:-	UBE2Q2	41669	chr15:76175707:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0398	0	PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1,UBE2Q2->chr15:76135622-76193419:+,ubiquitin_conjugating_enzyme_E2_Q2	HS698T_FIBROBLAST	1	1	0.0398	TRUE	0	0	0	1	0	TRUE	ACH-000850
HS698T_FIBROBLAST	GPR39--NCKAP5	2	0	GPR39	2325	chr2:133175471:+	NCKAP5	39094	chr2:133430878:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	LOCAL_INVERSION:+:-:[25242],GPR39->G_protein-coupled_receptor_39,chr2:133174147-133404132:+,NCKAP5->NCK_associated_protein_5,chr2:133429374-134326034:-	HS698T_FIBROBLAST	1	1	0.0266	TRUE	0	0	0	2	0	TRUE	ACH-000850
HS698T_FIBROBLAST	NCAM2--CCDC14	2	0	NCAM2	1304	chr21:22370936:+	CCDC14	45056	chr3:123667979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	NCAM2->chr21:22370633-22915650:+,neural_cell_adhesion_molecule_2,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14	HS698T_FIBROBLAST	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000850
HS698T_FIBROBLAST	RP3-510D11.1--DEF8	2	0	RP3-510D11.1	3450	chr1:9242066:-	DEF8	11051	chr16:90020651:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	RP3-510D11.1->chr1:9242066-9262678:-,DEF8->chr16:90014333-90034468:+,differentially_expressed_in_FDCP_8_homolog_(mouse)	HS698T_FIBROBLAST	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000850
LOXIMVI_SKIN	SLC38A2--PTMA	90	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.038	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	LOXIMVI_SKIN	1	1	1.038	TRUE	0	0	0	10	0	TRUE	ACH-000750
LOXIMVI_SKIN	CLTC--RPS6KB1	8	6	CLTC	1316	chr17:57697534:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	286	53	0.05	0.21	0.0923	0.0692	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	LOXIMVI_SKIN	0.05	0.21	0.1615	TRUE	0	1	0	5	0	TRUE	ACH-000750
LOXIMVI_SKIN	AP000525.9--LA16c-60G3.6	4	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	LOXIMVI_SKIN	1	1	0.0461	TRUE	0	5	0	18	5	TRUE	ACH-000750
LOXIMVI_SKIN	ITGB5--ZNF148	3	4	ITGB5	17016	chr3:124527869:-	ZNF148	35868	chr3:125042288:-	ONLY_REF_SPLICE	YES	136	33	0.05	0.17	0.0346	0.0461	ITGB5->chr3:124480795-124620265:-,integrin_subunit_beta_5,ZNF148->chr3:124944405-125094198:-,zinc_finger_protein_148	LOXIMVI_SKIN	0.05	0.17	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	ATP9B--ZNF516	3	1	ATP9B	25606	chr18:77037196:+	ZNF516	60555	chr18:74092259:-	ONLY_REF_SPLICE	YES	8	36	0.33	0.1	0.0346	0.0115	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},{Klijn_CCL:Skin=1},ATP9B->ATPase_phospholipid_transporting_9B_(putative),chr18:76829285-77138283:+,ZNF516->chr18:74069644-74207146:-,zinc_finger_protein_516	LOXIMVI_SKIN	0.1	0.33	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	CCDC82--CEP57	3	0	CCDC82	1080	chr11:96123008:-	CEP57	23975	chr11:95532396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},CCDC82->chr11:96085933-96123087:-,coiled-coil_domain_containing_82,CEP57->centrosomal_protein_57,chr11:95523129-95565857:+	LOXIMVI_SKIN	1	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	BTRC--YWHAE	2	0	BTRC	1166	chr10:103113985:+	YWHAE	28391	chr17:1268352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+,YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon	LOXIMVI_SKIN	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	CACNA2D4--INF2	2	0	CACNA2D4	26408	chr12:1919444:-	INF2	56520	chr14:105185132:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-,INF2->chr14:105155943-105185942:+,inverted_formin,_FH2_and_WH2_domain_containing	LOXIMVI_SKIN	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	PTBP3--KIAA0368	2	0	PTBP3	1198	chr9:115095750:-	KIAA0368	27893	chr9:114213835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,KIAA0368->KIAA0368,chr9:114122972-114247025:-	LOXIMVI_SKIN	1	1	0.0231	TRUE	0	0	0	3	0	TRUE	ACH-000750
LOXIMVI_SKIN	RCC1--TCP1	2	0	RCC1	2175	chr1:28834672:+	TCP1	25988	chr6:160201119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TCP1->chr6:160199530-160210781:-,t-complex_1	LOXIMVI_SKIN	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	SMAP2--ALS2	2	0	SMAP2	3725	chr1:40839895:+	ALS2	50810	chr2:202581434:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	SMAP2->chr1:40810522-40888998:+,small_ArfGAP2,ALS2->ALS2,_alsin_Rho_guanine_nucleotide_exchange_factor,chr2:202565277-202645912:-	LOXIMVI_SKIN	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	TAF1D--FKBP4	2	0	TAF1D	6933	chr11:93470230:-	FKBP4	21185	chr12:2908254:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-,FKBP4->FK506_binding_protein_4,chr12:2904119-2914576:+	LOXIMVI_SKIN	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000750
VMCUB1_URINARY_TRACT	PPP6R3--ASRGL1	6	1	PPP6R3	1110	chr11:68228295:+	ASRGL1	45594	chr11:62156605:+	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.1494	0.0249	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	VMCUB1_URINARY_TRACT	0.88	1	0.1743	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	RP11-178C3.1--VMP1	6	1	RP11-178C3.1	2149	chr17:58022879:+	VMP1	22686	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	60	1	0.1	0.1494	0.0249	LOCAL_REARRANGEMENT:+:[98653],RP11-178C3.1->chr17:58018269-58050462:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	VMCUB1_URINARY_TRACT	0.1	1	0.1743	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	TUBD1--CLTC	4	4	TUBD1	8664	chr17:57955464:-	CLTC	48447	chr17:57771089:+	ONLY_REF_SPLICE	YES	0	29	1	0.22	0.0996	0.0996	TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	VMCUB1_URINARY_TRACT	0.22	1	0.1992	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	AMOTL1--RAB38	4	0	AMOTL1	3353	chr11:94474154:+	RAB38	31321	chr11:87883123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0996	0	AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+,RAB38->RAB38,_member_RAS_oncogene_family,chr11:87846410-87908635:-	VMCUB1_URINARY_TRACT	1	1	0.0996	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	SEMA3B--TPM4	4	0	SEMA3B	3592	chr3:50307685:+	TPM4	19518	chr19:16192750:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0996	0	SEMA3B->Oncogene{Bushman},chr3:50304990-50314977:+,semaphorin_3B,TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4	VMCUB1_URINARY_TRACT	1	1	0.0996	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	WLS--PVRL1	4	0	WLS	1746	chr1:68698058:-	PVRL1	36037	chr11:119532242:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0996	0	WLS->chr1:68564142-68698803:-,wntless_Wnt_ligand_secretion_mediator,PVRL1->chr11:119494120-119599794:-	VMCUB1_URINARY_TRACT	1	1	0.0996	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	TRPM4--SNRNP70	3	1	TRPM4	6449	chr19:49671993:+	SNRNP70	28382	chr19:49601684:+	ONLY_REF_SPLICE	YES	1	22	0.8	0.15	0.0747	0.0249	LOCAL_REARRANGEMENT:+:[49136],TRPM4->chr19:49660998-49715093:+,transient_receptor_potential_cation_channel_subfamily_M_member_4,SNRNP70->chr19:49588676-49611862:+,small_nuclear_ribonucleoprotein_U1_subunit_70	VMCUB1_URINARY_TRACT	0.15	0.8	0.0996	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	ANO1-AS1--RABL3	3	0	ANO1-AS1	1149	chr11:70034467:-	RABL3	14580	chr3:120408347:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	ANO1-AS1->ANO1_antisense_RNA_1,chr11:70033894-70034615:-,RABL3->RAB,_member_of_RAS_oncogene_family_like_3,chr3:120405528-120461840:-	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	ASPH--GTF2A1	3	0	ASPH	26539	chr8:62537414:-	GTF2A1	62329	chr14:81644320:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,GTF2A1->Oncogene{Bushman},chr14:81641796-81687721:-,general_transcription_factor_IIA_subunit_1	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	CELSR1--NRP1	3	0	CELSR1	17592	chr22:46795674:-	NRP1	69934	chr10:33483582:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,NRP1->chr10:33466420-33625190:-,neuropilin_1	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	CSPG4P12--TBC1D2B	3	0	CSPG4P12	11871	chr15:85748570:+	TBC1D2B	42500	chr15:78288814:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	CSPG4P12->chondroitin_sulfate_proteoglycan_4_pseudogene_12,chr15:85734669-85757136:+,TBC1D2B->TBC1_domain_family_member_2B,chr15:78276378-78370066:-	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	DUSP4--ACTN4	3	0	DUSP4	9239	chr8:29194469:-	ACTN4	16174	chr19:39138335:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	DUSP4->chr8:29190581-29208185:-,dual_specificity_phosphatase_4,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	EWSR1--ATP2B4	3	0	EWSR1	21281	chr22:29695698:+	ATP2B4	36563	chr1:203678621:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	GLG1--AC004158.2	3	0	GLG1	1458	chr16:74640555:-	AC004158.2	43775	chr16:72557314:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0747	0	GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,AC004158.2->chr16:72459384-72698908:-	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	INPP5E--NUDCD3	3	0	INPP5E	8545	chr9:139323986:-	NUDCD3	27402	chr7:44424623:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	INPP5E->chr9:139323071-139334274:-,inositol_polyphosphate-5-phosphatase_E,NUDCD3->NudC_domain_containing_3,chr7:44418720-44530479:-	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	PPIP5K2--C6orf48	3	0	PPIP5K2	1340	chr5:102456192:+	C6orf48	50437	chr6:31803188:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0747	0	PPIP5K2->chr5:102455853-102548500:+,diphosphoinositol_pentakisphosphate_kinase_2,C6orf48->chr6:31802385-31807541:+,chromosome_6_open_reading_frame_48	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	RUVBL1--PRDX1	3	0	RUVBL1	8380	chr3:127819437:-	PRDX1	27131	chr1:45980579:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-,PRDX1->Oncogene{Bushman},chr1:45976708-45988719:-,peroxiredoxin_1	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	TINAGL1--MSN	3	0	TINAGL1	10557	chr1:32052875:+	MSN	32557	chrX:64959774:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	TINAGL1->chr1:32042116-32053288:+,tubulointerstitial_nephritis_antigen_like_1,MSN->Oncogene{Bushman},chrX:64808257-64961791:+,moesin	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	ULK1--FDPS	3	0	ULK1	10717	chr12:132398913:+	FDPS	29485	chr1:155290269:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	ULK1->chr12:132379196-132407712:+,unc-51_like_autophagy_activating_kinase_1,FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	GNB1--EIF4G2	2	0	GNB1	5398	chr1:1756836:-	EIF4G2	30000	chr11:10822634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-,EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	IFNAR1--COL18A1	2	0	IFNAR1	2827	chr21:34707953:+	COL18A1	22284	chr21:46888156:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	IFNAR1->Oncogene{Bushman},chr21:34696734-34732168:+,interferon_alpha_and_beta_receptor_subunit_1,COL18A1->chr21:46825052-46933634:+,collagen_type_XVIII_alpha_1	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	MGST2--SCOC	2	0	MGST2	6786	chr4:140625350:+	SCOC	20254	chr4:141300275:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	MGST2->chr4:140586922-140661899:+,microsomal_glutathione_S-transferase_2,SCOC->chr4:141178440-141306880:+,short_coiled-coil_protein	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	MIR205HG--C14orf166	2	0	MIR205HG	2657	chr1:209603821:+	C14orf166	13254	chr14:52466426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C14orf166->chr14:52456193-52471420:+,chromosome_14_open_reading_frame_166	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	MYEOV--VWCE	2	0	MYEOV	6399	chr11:69084392:+	VWCE	18077	chr11:61050377:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,VWCE->chr11:61025762-61062896:-,von_Willebrand_factor_C_and_EGF_domains	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	NAMPT--ARID4A	2	0	NAMPT	2499	chr7:105925274:-	ARID4A	46511	chr14:58832236:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase,ARID4A->AT-rich_interaction_domain_4A,Oncogene{Bushman},chr14:58765103-58840605:+	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	PIN4--EIF3G	2	0	PIN4	2874	chrX:71406384:+	EIF3G	16744	chr19:10227864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	PIN4->chrX:71401203-71522776:+,peptidylprolyl_cis/trans_isomerase,_NIMA-interacting_4,EIF3G->chr19:10225693-10230596:-,eukaryotic_translation_initiation_factor_3_subunit_G	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
UACC812_BREAST	HDGF--S100A10	107	24	HDGF	5607	chr1:156721135:-	S100A10	16701	chr1:151958727:-	ONLY_REF_SPLICE	YES	6	23	0.96	0.85	1.2929	0.29	HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor,S100A10->Oncogene{Bushman},S100_calcium_binding_protein_A10,chr1:151955391-151966866:-	UACC812_BREAST	0.85	0.96	1.5829	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	WIPF2--ERBB2	61	10	WIPF2	1189	chr17:38375744:+	ERBB2	23149	chr17:37851241:+	ONLY_REF_SPLICE	YES	6	7	0.92	0.91	0.7371	0.1208	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	UACC812_BREAST	0.91	0.92	0.8579	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	PRPF3--SRGAP2	46	20	PRPF3	10751	chr1:150310802:+	SRGAP2	24300	chr1:206566046:+	ONLY_REF_SPLICE	YES	16	3	0.8	0.96	0.5558	0.2417	PRPF3->chr1:150293925-150325671:+,pre-mRNA_processing_factor_3,SRGAP2->SLIT-ROBO_Rho_GTPase_activating_protein_2,chr1:206516200-206637783:+	UACC812_BREAST	0.8	0.96	0.7975	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	SRGAP2B--PRPF3	25	9	SRGAP2B	6684	chr1:144094424:+	PRPF3	26330	chr1:150321633:+	ONLY_REF_SPLICE	YES	0	24	1	0.59	0.3021	0.1087	SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+,PRPF3->chr1:150293925-150325671:+,pre-mRNA_processing_factor_3	UACC812_BREAST	0.59	1	0.4108	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	PPP1R12B--SNX27	10	5	PPP1R12B	1444	chr1:202318270:+	SNX27	58770	chr1:151655832:+	ONLY_REF_SPLICE	YES	0	4	1	0.79	0.1208	0.0604	GTEx&tcga_normals:1/3694=0.03%,PPP1R12B->chr1:202317827-202561834:+,protein_phosphatase_1_regulatory_subunit_12B,SNX27->chr1:151584541-151671567:+,sorting_nexin_family_member_27	UACC812_BREAST	0.79	1	0.1812	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	LMO7--SCEL	9	3	LMO7	28443	chr13:76408523:+	SCEL	49572	chr13:78129992:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.1087	0.0362	LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+,SCEL->chr13:78109809-78219398:+,sciellin	UACC812_BREAST	0.86	1	0.1449	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	ARID1A--WDTC1	9	1	ARID1A	2508	chr1:27024031:+	WDTC1	30131	chr1:27608730:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1087	0.0121	{Klijn_CCL:Breast=1},ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+	UACC812_BREAST	1	1	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	LASP1--CSF3	8	2	LASP1	7268	chr17:37054772:+	CSF3	18959	chr17:38171944:+	ONLY_REF_SPLICE	YES	28	47	0.26	0.18	0.0967	0.0242	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,CSF3->chr17:38171614-38174066:+,colony_stimulating_factor_3	UACC812_BREAST	0.18	0.26	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	WIPF2--ERBB2	5	12	WIPF2	1214	chr17:38375769:+	ERBB2	23149	chr17:37851241:+	ONLY_REF_SPLICE	YES	6	7	0.74	0.71	0.0604	0.145	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	UACC812_BREAST	0.71	0.74	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	PHF12--LRRC37BP1	7	3	PHF12	2707	chr17:27277083:-	LRRC37BP1	26742	chr17:28958773:+	ONLY_REF_SPLICE	YES	8	0	0.56	1	0.0846	0.0362	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,LRRC37BP1->chr17:28956698-28964482:+,leucine_rich_repeat_containing_37B_pseudogene_1	UACC812_BREAST	0.56	1	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	RRNAD1--CTSS	6	7	RRNAD1	5624	chr1:156704285:+	CTSS	18357	chr1:150720355:-	ONLY_REF_SPLICE	YES	11	4	0.54	0.76	0.0725	0.0846	RRNAD1->chr1:156698234-156706752:+,ribosomal_RNA_adenine_dimethylase_domain_containing_1,CTSS->cathepsin_S,chr1:150702672-150738433:-	UACC812_BREAST	0.54	0.76	0.1571	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	RRNAD1--CTSS	4	9	RRNAD1	5590	chr1:156704251:+	CTSS	17951	chr1:150720761:-	INCL_NON_REF_SPLICE	NO	9	0	0.59	1	0.0483	0.1087	RRNAD1->chr1:156698234-156706752:+,ribosomal_RNA_adenine_dimethylase_domain_containing_1,CTSS->cathepsin_S,chr1:150702672-150738433:-	UACC812_BREAST	0.59	1	0.157	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	HDGF--S100A10	6	0	HDGF	4721	chr1:156722021:-	S100A10	16701	chr1:151958727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0725	0	HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor,S100A10->Oncogene{Bushman},S100_calcium_binding_protein_A10,chr1:151955391-151966866:-	UACC812_BREAST	1	1	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	SUZ12P--MYO18A	6	0	SUZ12P	1513	chr17:29036829:+	MYO18A	22927	chr17:27494039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0725	0	SUZ12P->chr17:29036317-29117926:+,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	UACC812_BREAST	1	1	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	RRNAD1--CTSS	4	7	RRNAD1	5590	chr1:156704251:+	CTSS	18357	chr1:150720355:-	INCL_NON_REF_SPLICE	YES	9	4	0.55	0.73	0.0483	0.0846	RRNAD1->chr1:156698234-156706752:+,ribosomal_RNA_adenine_dimethylase_domain_containing_1,CTSS->cathepsin_S,chr1:150702672-150738433:-	UACC812_BREAST	0.55	0.73	0.1329	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	RRNAD1--CTSS	5	2	RRNAD1	4651	chr1:156703312:+	CTSS	18357	chr1:150720355:-	ONLY_REF_SPLICE	YES	14	4	0.33	0.64	0.0604	0.0242	RRNAD1->chr1:156698234-156706752:+,ribosomal_RNA_adenine_dimethylase_domain_containing_1,CTSS->cathepsin_S,chr1:150702672-150738433:-	UACC812_BREAST	0.33	0.64	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	SUZ12P--MYO18A	5	1	SUZ12P	5451	chr17:29062115:+	MYO18A	22927	chr17:27494039:-	ONLY_REF_SPLICE	YES	16	0	0.27	1	0.0604	0.0121	SUZ12P->chr17:29036317-29117926:+,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	UACC812_BREAST	0.27	1	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	WIPF2--ERBB2	5	1	WIPF2	1189	chr17:38375744:+	ERBB2	27594	chr17:37863243:+	ONLY_REF_SPLICE	YES	6	145	0.5	0.04	0.0604	0.0121	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	UACC812_BREAST	0.04	0.5	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	WARS2--AKT3	5	0	WARS2	1117	chr1:119683178:-	AKT3	25666	chr1:243859018:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0604	0	WARS2->chr1:119573839-119683294:-,tryptophanyl_tRNA_synthetase_2,_mitochondrial,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	UACC812_BREAST	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	ATAD5--ARHGAP23	4	1	ATAD5	8623	chr17:29171934:+	ARHGAP23	45663	chr17:36642303:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0483	0.0121	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+	UACC812_BREAST	0.83	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	HDGF--S100A10	4	1	HDGF	4912	chr1:156721830:-	S100A10	16701	chr1:151958727:-	ONLY_REF_SPLICE	YES	3	23	0.62	0.18	0.0483	0.0121	HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor,S100A10->Oncogene{Bushman},S100_calcium_binding_protein_A10,chr1:151955391-151966866:-	UACC812_BREAST	0.18	0.62	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	MLLT6--PLXDC1	4	0	MLLT6	2488	chr17:36863282:+	PLXDC1	47428	chr17:37234301:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	MLLT6->Oncogene{Bushman},chr17:36861795-36886056:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_6,PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1	UACC812_BREAST	1	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	POLR2J2--SAMHD1	4	0	POLR2J2	5507	chr7:102281082:-	SAMHD1	29720	chr20:35519906:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	POLR2J2->chr7:102277474-102312076:-,chr7:102277496-102312088:-,polymerase_(RNA)_II_subunit_J2,SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-	UACC812_BREAST	1	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	AKT3--P2RX5	3	2	AKT3	16835	chr1:243809195:-	P2RX5	45288	chr17:3585272:-	ONLY_REF_SPLICE	NO	0	2	1	0.71	0.0362	0.0242	{Klijn_CCL:Breast=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,P2RX5->chr17:3575493-3599698:-,purinergic_receptor_P2X_5	UACC812_BREAST	0.71	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	ACTB--ALKBH7	3	0	ACTB	7441	chr7:5567207:-	ALKBH7	12981	chr19:6374558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,ALKBH7->alkB_homolog_7,chr19:6372444-6375042:+	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	CDO1--CTNNB1	3	0	CDO1	8561	chr5:115140914:-	CTNNB1	28486	chr3:41281774:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	CDO1->chr5:115140430-115152651:-,cysteine_dioxygenase_type_1,CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	CTC-297N7.8--TOB1	3	0	CTC-297N7.8	1522	chr17:10578802:-	TOB1	12116	chr17:48939724:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	CTC-297N7.8->chr17:10575791-10579323:-,TOB1->chr17:48939584-48945339:-,transducer_of_ERBB2,_1	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	GPC6--PCDH9-AS2	3	0	GPC6	2934	chr13:94197674:+	PCDH9-AS2	22822	chr13:67488530:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	GPC6->chr13:93879095-95059655:+,glypican_6,PCDH9-AS2->PCDH9_antisense_RNA_2,chr13:67399301-67489163:+	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	IGFBP2--CLK2	3	0	IGFBP2	5478	chr2:217526680:+	CLK2	16676	chr1:155238229:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	IGFBP2->Oncogene{Bushman},chr2:217497551-217529159:+,insulin_like_growth_factor_binding_protein_2,CLK2->CDC_like_kinase_2,chr1:155232659-155248282:-	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	LAPTM4B--CSE1L	3	0	LAPTM4B	8797	chr8:98864185:+	CSE1L	30840	chr20:47707495:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta,CSE1L->Oncogene{Bushman},chr20:47662849-47713489:+,chromosome_segregation_1_like	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	PTP4A2--CHD3	3	0	PTP4A2	5019	chr1:32401187:-	CHD3	24955	chr17:7793053:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CHD3->Oncogene{Bushman},chr17:7788124-7816078:+,chromodomain_helicase_DNA_binding_protein_3	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	SIPA1--KANSL1	3	0	SIPA1	10348	chr11:65416833:+	KANSL1	35574	chr17:44117172:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	SIPA1->Oncogene{Bushman},chr11:65405568-65418401:+,signal-induced_proliferation-associated_1,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	RRNAD1--CTSS	2	3	RRNAD1	4651	chr1:156703312:+	CTSS	17951	chr1:150720761:-	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0242	0.0362	RRNAD1->chr1:156698234-156706752:+,ribosomal_RNA_adenine_dimethylase_domain_containing_1,CTSS->cathepsin_S,chr1:150702672-150738433:-	UACC812_BREAST	0.26	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	CEP128--TTC1	2	0	CEP128	15647	chr14:81329101:-	TTC1	46159	chr5:159462147:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,TTC1->chr5:159436120-159492550:+,tetratricopeptide_repeat_domain_1	UACC812_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	DAG1--CYFIP1	2	0	DAG1	1343	chr3:49506488:+	CYFIP1	20817	chr15:22925777:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	DAG1->chr3:49506146-49573048:+,dystroglycan_1,CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1	UACC812_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	NANS--UBE2D2	2	0	NANS	2418	chr9:100823279:+	UBE2D2	17026	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	NANS->N-acetylneuraminate_synthase,chr9:100819021-100845357:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	UACC812_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	NSD1--RP11-1277A3.2	2	0	NSD1	21541	chr5:176684152:+	RP11-1277A3.2	46002	chr5:177059739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,RP11-1277A3.2->chr5:177046060-177099210:-	UACC812_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	SCEL--LINC00446	2	0	SCEL	4068	chr13:78133998:+	LINC00446	39087	chr13:78605998:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SCEL->chr13:78109809-78219398:+,sciellin,LINC00446->chr13:78587018-78627730:+,long_intergenic_non-protein_coding_RNA_446	UACC812_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	TBC1D22A--HAP1	2	0	TBC1D22A	1228	chr22:47158745:+	HAP1	27673	chr17:39889050:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,HAP1->chr17:39873994-39890896:-,huntingtin-associated_protein_1	UACC812_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	LMO7--SCEL	1	3	LMO7	26166	chr13:76398009:+	SCEL	49572	chr13:78129992:+	ONLY_REF_SPLICE	NO	13	0	0.24	1	0.0121	0.0362	LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+,SCEL->chr13:78109809-78219398:+,sciellin	UACC812_BREAST	0.24	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	PRPF3--SRGAP2	1	3	PRPF3	9584	chr1:150307712:+	SRGAP2	24300	chr1:206566046:+	ONLY_REF_SPLICE	NO	19	3	0.17	0.57	0.0121	0.0362	PRPF3->chr1:150293925-150325671:+,pre-mRNA_processing_factor_3,SRGAP2->SLIT-ROBO_Rho_GTPase_activating_protein_2,chr1:206516200-206637783:+	UACC812_BREAST	0.17	0.57	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	PHF12--LRRC37BP1	1	2	PHF12	2707	chr17:27277083:-	LRRC37BP1	28085	chr17:28960116:+	ONLY_REF_SPLICE	YES	8	15	0.27	0.17	0.0121	0.0242	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,LRRC37BP1->chr17:28956698-28964482:+,leucine_rich_repeat_containing_37B_pseudogene_1	UACC812_BREAST	0.17	0.27	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	A4GALT--TTLL1	1	1	A4GALT	1134	chr22:43117171:-	TTLL1	17478	chr22:43447893:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0121	0.0121	A4GALT->alpha_1,4-galactosyltransferase,chr22:43088127-43117304:-,TTLL1->chr22:43435522-43485434:-,tubulin_tyrosine_ligase_like_1	UACC812_BREAST	0.5	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	167	56	IGH@	94353	chr14:106330425:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	69	1	0.76	2.6058	0.8738	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	3.4796	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	161	56	IGH@	94754	chr14:106330024:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	69	1	0.76	2.5122	0.8738	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	3.386	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	47	56	IGH@	93161	chr14:106331617:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	69	1	0.6	0.7334	0.8738	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	1.6072	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRD1--PHBP12	40	54	NRD1	27233	chr1:52263921:-	PHBP12	36992	chr1:51246299:+	INCL_NON_REF_SPLICE	YES	332	58	0.22	0.62	0.6241	0.8426	NRD1->chr1:52254863-52344477:-,PHBP12->chr1:51246012-51246822:+,prohibitin_pseudogene_12	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.62	1.4667	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	28	56	IGH@	95370	chr14:106329408:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	NO	0	69	1	0.55	0.4369	0.8738	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	1.3107	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	21	64	IGH@	94353	chr14:106330425:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.3277	0.9986	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.3263	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	21	64	IGH@	94754	chr14:106330024:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.3277	0.9986	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.3263	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	19	61	IGH@	94754	chr14:106330024:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	YES	0	21	1	0.79	0.2965	0.9518	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	1.2483	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	19	61	IGH@	94353	chr14:106330425:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	YES	0	21	1	0.79	0.2965	0.9518	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	1.2483	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIF20B--GBE1	28	17	KIF20B	27158	chr10:91514430:+	GBE1	46563	chr3:81699072:-	ONLY_REF_SPLICE	YES	24	13	0.65	0.78	0.4369	0.2653	{Klijn_CCL:Lymphoid=1},KIF20B->chr10:91461367-91534700:+,kinesin_family_member_20B,GBE1->chr3:81538850-81811312:-,glucan_(1,4-alpha-),_branching_enzyme_1	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.78	0.7022	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLK1--RP11-340A13.3	26	21	TLK1	7437	chr2:171974249:-	RP11-340A13.3	37878	chr4:59940962:-	INCL_NON_REF_SPLICE	YES	61	0	0.44	1	0.4057	0.3277	TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1,RP11-340A13.3->chr4:59912738-59940974:-	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.7334	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	8	64	IGH@	93161	chr14:106331617:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	NO	0	1	1	0.99	0.1248	0.9986	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.1234	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	7	64	IGH@	95370	chr14:106329408:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	NO	0	1	1	0.99	0.1092	0.9986	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.1078	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	6	61	IGH@	93161	chr14:106331617:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	NO	0	21	1	0.76	0.0936	0.9518	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	1.0454	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	5	61	IGH@	95370	chr14:106329408:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	NO	0	21	1	0.76	0.078	0.9518	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	1.0298	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GBE1--KIF20B	17	7	GBE1	5175	chr3:81719989:-	KIF20B	53134	chr10:91518463:+	ONLY_REF_SPLICE	YES	15	24	0.62	0.5	0.2653	0.1092	{Klijn_CCL:Lymphoid=1},GBE1->chr3:81538850-81811312:-,glucan_(1,4-alpha-),_branching_enzyme_1,KIF20B->chr10:91461367-91534700:+,kinesin_family_member_20B	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.62	0.3745	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	3	57	IGH@	95436	chr14:106329342:-	WHSC1	138040	chr4:1902353:+	INCL_NON_REF_SPLICE	NO	0	69	1	0.47	0.0468	0.8894	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.9362	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	56	IGH@	94353	chr14:106330425:-	WHSC1	136858	chr4:1900948:+	ONLY_REF_SPLICE	YES	0	78	1	0.42	0.0156	0.8738	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.8894	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YIPF1--ZCCHC11	10	8	YIPF1	10570	chr1:54325729:-	ZCCHC11	34502	chr1:52941207:-	ONLY_REF_SPLICE	YES	80	110	0.18	0.14	0.156	0.1248	YIPF1->Yip1_domain_family_member_1,chr1:54317392-54356407:-,ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.18	0.2808	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL4A3--FBXO36	6	8	COL4A3	39327	chr2:228163528:+	FBXO36	55424	chr2:230840957:+	ONLY_REF_SPLICE	YES	5	0	0.74	1	0.0936	0.1248	{Klijn_CCL:Lymphoid=1},COL4A3->Oncogene{Bushman},chr2:228029281-228179508:+,collagen_type_IV_alpha_3,FBXO36->F-box_protein_36,chr2:230787018-230877825:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	0.2184	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAND1--ACSS3	5	8	CAND1	6552	chr12:67688936:+	ACSS3	29482	chr12:81416162:+	ONLY_REF_SPLICE	YES	182	0	0.07	1	0.078	0.1248	{Klijn_CCL:Lymphoid=1},CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1,ACSS3->acyl-CoA_synthetase_short-chain_family_member_3,chr12:81331594-81650533:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.2028	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAND1--ACSS3	5	6	CAND1	6552	chr12:67688936:+	ACSS3	32840	chr12:81503339:+	ONLY_REF_SPLICE	YES	182	0	0.06	1	0.078	0.0936	{Klijn_CCL:Lymphoid=1},CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1,ACSS3->acyl-CoA_synthetase_short-chain_family_member_3,chr12:81331594-81650533:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.1716	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--SEPT7	5	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.078	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.078	TRUE	1	1	0	18	1	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLK1--RP11-340A13.3	2	11	TLK1	7437	chr2:171974249:-	RP11-340A13.3	38943	chr4:59913853:-	ONLY_REF_SPLICE	YES	61	0	0.18	1	0.0312	0.1716	TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1,RP11-340A13.3->chr4:59912738-59940974:-	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.2028	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AK4--ZCCHC11	4	2	AK4	2004	chr1:65614235:+	ZCCHC11	34329	chr1:52943554:-	ONLY_REF_SPLICE	YES	4	131	0.6	0.04	0.0624	0.0312	AK4->adenylate_kinase_4,chr1:65613232-65697828:+,ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.6	0.0936	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAWR--RPS11P6	4	1	PAWR	2369	chr12:80083509:-	RPS11P6	31133	chr12:64782813:+	ONLY_REF_SPLICE	YES	44	0	0.1	1	0.0624	0.0156	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RPS11P6->chr12:64616117-64790845:+,ribosomal_protein_S11_pseudogene_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAND1--ACSS3	2	8	CAND1	7809	chr12:67691443:+	ACSS3	29482	chr12:81416162:+	ONLY_REF_SPLICE	YES	246	0	0.04	1	0.0312	0.1248	{Klijn_CCL:Lymphoid=1},CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1,ACSS3->acyl-CoA_synthetase_short-chain_family_member_3,chr12:81331594-81650533:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.156	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCK2--LPHN3	4	0	NCK2	1242	chr2:106361595:+	LPHN3	20628	chr4:62542544:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0624	0	NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+,LPHN3->chr4:62066976-62944053:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0624	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AK4--ZCCHC11	3	2	AK4	2004	chr1:65614235:+	ZCCHC11	33155	chr1:52947268:-	INCL_NON_REF_SPLICE	YES	4	130	0.56	0.04	0.0468	0.0312	AK4->adenylate_kinase_4,chr1:65613232-65697828:+,ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.56	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARF1--BMI1	2	0	ARF1	1106	chr1:228270466:+	BMI1	14095	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	GTEx&tcga_normals:1/3694=0.03%,ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM65A--TRAF3	2	0	FAM65A	2823	chr16:67562817:+	TRAF3	27327	chr14:103352526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARS--R3HDM2	2	0	MARS	13325	chr12:57906747:+	R3HDM2	29486	chr12:57690334:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	LOCAL_INVERSION:+:-:[44440],MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase,R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFWD3--PMFBP1	2	0	RFWD3	9064	chr16:74678260:-	PMFBP1	26694	chr16:72205167:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	RFWD3->chr16:74655292-74700779:-,ring_finger_and_WD_repeat_domain_3,PMFBP1->chr16:72146056-72210777:-,polyamine_modulated_factor_1_binding_protein_1	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000714
A498_KIDNEY	CTD-2547E10.2--CTB-31N19.2	35	14	CTD-2547E10.2	1617	chr16:21531149:-	CTB-31N19.2	32575	chr16:21561694:-	ONLY_REF_SPLICE	YES	6	0	0.89	1	0.4461	0.1784	LOCAL_REARRANGEMENT:-:[12501],CTD-2547E10.2->chr16:21458004-21531765:-,CTB-31N19.2->chr16:21544266-21561694:-	A498_KIDNEY	0.89	1	0.6245	TRUE	0	0	0	2	0	TRUE	ACH-000555
A498_KIDNEY	SH2B2--CUX1	14	3	SH2B2	2903	chr7:101944563:+	CUX1	64578	chr7:101925132:+	ONLY_REF_SPLICE	YES	1	113	0.94	0.13	0.1784	0.0382	LOCAL_REARRANGEMENT:+:[1156],SH2B2->Oncogene{Bushman},SH2B_adaptor_protein_2,chr7:101928405-101962178:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	A498_KIDNEY	0.13	0.94	0.2166	TRUE	0	0	0	1	0	TRUE	ACH-000555
A498_KIDNEY	INVS--TGFBR1	11	2	INVS	15823	chr9:103009069:+	TGFBR1	34428	chr9:101894791:+	ONLY_REF_SPLICE	YES	29	20	0.31	0.39	0.1402	0.0255	{Klijn_CCL:Kidney=1},INVS->chr9:102861538-103063282:+,inversin,TGFBR1->Oncogene{Bushman},chr9:101866320-101916474:+,transforming_growth_factor_beta_receptor_1	A498_KIDNEY	0.31	0.39	0.1657	TRUE	0	0	0	1	0	TRUE	ACH-000555
A498_KIDNEY	RPH3AL--VPS53	9	0	RPH3AL	1058	chr17:235988:-	VPS53	52156	chr17:505136:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1147	0	RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	A498_KIDNEY	1	1	0.1147	TRUE	0	0	0	1	0	TRUE	ACH-000555
A498_KIDNEY	CTD-2547E10.2--CTB-31N19.2	4	2	CTD-2547E10.2	1617	chr16:21531149:-	CTB-31N19.2	33694	chr16:21559327:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.051	0.0255	LOCAL_REARRANGEMENT:-:[12501],CTD-2547E10.2->chr16:21458004-21531765:-,CTB-31N19.2->chr16:21544266-21561694:-	A498_KIDNEY	0.5	1	0.0765	TRUE	0	0	0	2	0	TRUE	ACH-000555
A498_KIDNEY	XXbac-BPG248L24.12--SPP1	4	0	XXbac-BPG248L24.12	1474	chr6:31324897:+	SPP1	5039	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0	XXbac-BPG248L24.12->chr6:31324424-31325414:+,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	A498_KIDNEY	1	1	0.051	TRUE	0	0	0	5	0	TRUE	ACH-000555
A498_KIDNEY	STIM1--PGAP2	2	3	STIM1	2883	chr11:3877639:+	PGAP2	34387	chr11:3829524:+	ONLY_REF_SPLICE	YES	103	6	0.05	0.45	0.0255	0.0382	LOCAL_REARRANGEMENT:+:[28156],STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1,PGAP2->chr11:3818954-3847601:+,post-GPI_attachment_to_proteins_2	A498_KIDNEY	0.05	0.45	0.0637	TRUE	0	2	0	1	2	TRUE	ACH-000555
A498_KIDNEY	GPC6--GPC5	2	1	GPC6	1775	chr13:93879869:+	GPC5	28531	chr13:93518535:+	ONLY_REF_SPLICE	YES	91	0	0.03	1	0.0255	0.0127	HGNC_GENEFAM,PROTCLUST,YOSHIHARA_TCGA_num_samples[HNSC:1|KIRC:1],GPC6->chr13:93879095-95059655:+,glypican_6,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	A498_KIDNEY	0.03	1	0.0382	TRUE	0	3	0	3	3	TRUE	ACH-000555
HPAC_PANCREAS	VTI1A--TECTB	11	11	VTI1A	1470	chr10:114207225:+	TECTB	26675	chr10:114053496:+	ONLY_REF_SPLICE	YES	35	0	0.39	1	0.1348	0.1348	VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,TECTB->chr10:114043493-114064793:+,tectorin_beta	HPAC_PANCREAS	0.39	1	0.2696	TRUE	0	0	0	1	0	TRUE	ACH-000270
HPAC_PANCREAS	CTCF--RP11-293N14.1	5	0	CTCF	7787	chr16:67655494:+	RP11-293N14.1	21140	chr16:76142240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0613	0	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,RP11-293N14.1->chr16:76141181-76181704:-	HPAC_PANCREAS	1	1	0.0613	TRUE	0	0	0	1	0	TRUE	ACH-000270
HPAC_PANCREAS	ARHGEF28--TBCA	2	0	ARHGEF28	1165	chr5:72922147:+	TBCA	58402	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	HPAC_PANCREAS	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000270
HPAC_PANCREAS	CASD1--CHMP1A	2	0	CASD1	19451	chr7:94183887:+	CHMP1A	29673	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CASD1->CAS1_domain_containing_1,chr7:94138531-94186331:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HPAC_PANCREAS	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000270
HPAC_PANCREAS	CDC42SE2--NDUFV1	2	0	CDC42SE2	6369	chr5:130651837:+	NDUFV1	21677	chr11:67375867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,NDUFV1->NADH:ubiquinone_oxidoreductase_core_subunit_V1,chr11:67374323-67380006:+	HPAC_PANCREAS	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000270
LN464_CENTRAL_NERVOUS_SYSTEM	RHPN2--INSL3	152	27	RHPN2	1105	chr19:33555690:-	INSL3	24224	chr19:17927868:-	ONLY_REF_SPLICE	YES	1	6	0.99	0.97	1.6221	0.2881	RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,INSL3->chr19:17927321-17932383:-,insulin_like_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.97	0.99	1.9102	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TXNRD1--CHST11	135	87	TXNRD1	17935	chr12:104709674:+	CHST11	40027	chr12:105150727:+	ONLY_REF_SPLICE	YES	436	89	0.34	0.71	1.4407	0.9285	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.34	0.71	2.3692	TRUE	0	0	0	2	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SNRPD2--ZNF266	73	1	SNRPD2	1683	chr19:46195145:-	ZNF266	12331	chr19:9530894:-	ONLY_REF_SPLICE	YES	15	29	0.83	0.72	0.7791	0.0107	SNRPD2->chr19:46190712-46195827:-,small_nuclear_ribonucleoprotein_D2_polypeptide,ZNF266->chr19:9523272-9546254:-,zinc_finger_protein_266	LN464_CENTRAL_NERVOUS_SYSTEM	0.72	0.83	0.7898	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RHPN2--INSL3	41	29	RHPN2	1105	chr19:33555690:-	INSL3	22022	chr19:17932384:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.4376	0.3095	RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,INSL3->chr19:17927321-17932383:-,insulin_like_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.99	1	0.7471	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TMEM170A--BCAR1	37	23	TMEM170A	4226	chr16:75485636:-	BCAR1	24931	chr16:75276988:-	ONLY_REF_SPLICE	YES	35	10	0.63	0.86	0.3949	0.2455	TMEM170A->chr16:75476952-75499395:-,transmembrane_protein_170A,BCAR1->BCAR1,_Cas_family_scaffolding_protein,chr16:75262928-75301951:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.63	0.86	0.6404	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MEGF8--HSH2D	36	20	MEGF8	6424	chr19:42841358:+	HSH2D	37747	chr19:16254442:+	ONLY_REF_SPLICE	YES	39	0	0.59	1	0.3842	0.2134	MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,HSH2D->chr19:16244838-16269386:+,hematopoietic_SH2_domain_containing	LN464_CENTRAL_NERVOUS_SYSTEM	0.59	1	0.5976	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ARFGEF2--BCAS1	34	19	ARFGEF2	26357	chr20:47626941:+	BCAS1	47358	chr20:52645511:-	ONLY_REF_SPLICE	YES	108	0	0.33	1	0.3628	0.2028	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.5656	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ZNF266--ADCK4	31	31	ZNF266	2911	chr19:9544344:-	ADCK4	20003	chr19:41211352:-	ONLY_REF_SPLICE	YES	26	35	0.7	0.64	0.3308	0.3308	ZNF266->chr19:9523272-9546254:-,zinc_finger_protein_266,ADCK4->aarF_domain_containing_kinase_4,chr19:41197434-41224112:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.64	0.7	0.6616	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NFIX--REEP6	33	18	NFIX	4898	chr19:13136366:+	REEP6	24883	chr19:1497173:+	ONLY_REF_SPLICE	YES	49	19	0.51	0.73	0.3522	0.1921	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,REEP6->chr19:1491165-1497926:+,receptor_accessory_protein_6	LN464_CENTRAL_NERVOUS_SYSTEM	0.51	0.73	0.5443	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NUBP2--RP11-296I10.3	30	0	NUBP2	1136	chr16:1833037:+	RP11-296I10.3	13195	chr16:70194214:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3202	0	NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,RP11-296I10.3->chr16:70190243-70207351:-	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.3202	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RALGAPB--RPRD1B	25	14	RALGAPB	6024	chr20:37128276:+	RPRD1B	53019	chr20:36718128:+	ONLY_REF_SPLICE	YES	61	132	0.39	0.23	0.2668	0.1494	RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,RPRD1B->chr20:36661948-36720768:+,regulation_of_nuclear_pre-mRNA_domain_containing_1B	LN464_CENTRAL_NERVOUS_SYSTEM	0.23	0.39	0.4162	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	LIMD1--LARS2	23	13	LIMD1	7325	chr3:45677743:+	LARS2	50725	chr3:45583321:+	ONLY_REF_SPLICE	YES	8	102	0.82	0.26	0.2455	0.1387	LOCAL_REARRANGEMENT:+:[5973],LIMD1->LIM_domains_containing_1,Oncogene{Bushman},chr3:45596886-45727830:+,LARS2->chr3:45429998-45590913:+,leucyl-tRNA_synthetase_2,_mitochondrial	LN464_CENTRAL_NERVOUS_SYSTEM	0.26	0.82	0.3842	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	AP1G1--CYB5B	24	8	AP1G1	24407	chr16:71779047:-	CYB5B	38740	chr16:69481053:+	ONLY_REF_SPLICE	YES	94	761	0.25	0.04	0.2561	0.0854	AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	LN464_CENTRAL_NERVOUS_SYSTEM	0.04	0.25	0.3415	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TMEM170A--BCAR1	15	25	TMEM170A	4295	chr16:75485567:-	BCAR1	24931	chr16:75276988:-	ONLY_REF_SPLICE	YES	38	10	0.51	0.8	0.1601	0.2668	TMEM170A->chr16:75476952-75499395:-,transmembrane_protein_170A,BCAR1->BCAR1,_Cas_family_scaffolding_protein,chr16:75262928-75301951:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.51	0.8	0.4269	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ZFYVE9--MCOLN2	20	4	ZFYVE9	3242	chr1:52698948:+	MCOLN2	31107	chr1:85424385:-	ONLY_REF_SPLICE	YES	21	30	0.53	0.44	0.2134	0.0427	ZFYVE9->chr1:52608046-52812358:+,zinc_finger_FYVE-type_containing_9,MCOLN2->chr1:85391268-85462796:-,mucolipin_2	LN464_CENTRAL_NERVOUS_SYSTEM	0.44	0.53	0.2561	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NFIC--ZNF14	18	1	NFIC	2241	chr19:3366664:+	ZNF14	26819	chr19:19825296:-	ONLY_REF_SPLICE	YES	4	8	0.83	0.7	0.1921	0.0107	NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C,ZNF14->chr19:19821280-19843906:-,zinc_finger_protein_14	LN464_CENTRAL_NERVOUS_SYSTEM	0.7	0.83	0.2028	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TOP1--ZHX3	13	18	TOP1	3859	chr20:39704934:+	ZHX3	30666	chr20:39897723:-	ONLY_REF_SPLICE	YES	377	1	0.08	0.97	0.1387	0.1921	LOCAL_INVERSION:+:-:[53961],TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I,ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.08	0.97	0.3308	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MYO5A--FAM214A	13	5	MYO5A	1271	chr15:52820977:-	FAM214A	70897	chr15:52885933:-	ONLY_REF_SPLICE	YES	5	15	0.78	0.55	0.1387	0.0534	LOCAL_REARRANGEMENT:-:[52267],MYO5A->chr15:52599480-52821247:-,myosin_VA,FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A	LN464_CENTRAL_NERVOUS_SYSTEM	0.55	0.78	0.1921	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MEGF8--HSH2D	8	24	MEGF8	7579	chr19:42847783:+	HSH2D	35385	chr19:16244837:+	INCL_NON_REF_SPLICE	YES	38	0	0.46	1	0.0854	0.2561	MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,HSH2D->chr19:16244838-16269386:+,hematopoietic_SH2_domain_containing	LN464_CENTRAL_NERVOUS_SYSTEM	0.46	1	0.3415	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	WWOX--CA5A	11	3	WWOX	6262	chr16:78149051:+	CA5A	36393	chr16:87938510:-	ONLY_REF_SPLICE	YES	15	0	0.48	1	0.1174	0.032	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.48	1	0.1494	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ITPK1--RP11-371E8.4	11	0	ITPK1	6705	chr14:93483021:-	RP11-371E8.4	29399	chr14:93681522:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1174	0	LOCAL_INVERSION:-:+:[68653],ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,RP11-371E8.4->chr14:93651318-93684932:+	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NFIX--REEP6	6	19	NFIX	4898	chr19:13136366:+	REEP6	23994	chr19:1496284:+	ONLY_REF_SPLICE	YES	49	17	0.34	0.6	0.064	0.2028	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,REEP6->chr19:1491165-1497926:+,receptor_accessory_protein_6	LN464_CENTRAL_NERVOUS_SYSTEM	0.34	0.6	0.2668	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SRPR--ASB16	10	2	SRPR	4811	chr11:126135229:-	ASB16	15113	chr17:42256125:+	INCL_NON_REF_SPLICE	YES	239	5	0.05	0.71	0.1067	0.0213	SRPR->chr11:126132814-126139039:-,ASB16->ankyrin_repeat_and_SOCS_box_containing_16,chr17:42247815-42256451:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.05	0.71	0.128	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SAMD4A--MAPK1IP1L	8	9	SAMD4A	2016	chr14:55034830:+	MAPK1IP1L	38739	chr14:55528398:+	ONLY_REF_SPLICE	YES	50	195	0.25	0.08	0.0854	0.096	SAMD4A->chr14:55033815-55260033:+,sterile_alpha_motif_domain_containing_4A,MAPK1IP1L->chr14:55518349-55536910:+,mitogen-activated_protein_kinase_1_interacting_protein_1-like	LN464_CENTRAL_NERVOUS_SYSTEM	0.08	0.25	0.1814	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RHPN2--INSL3	3	27	RHPN2	1105	chr19:33555690:-	INSL3	23107	chr19:17931299:-	ONLY_REF_SPLICE	YES	1	7	0.97	0.81	0.032	0.2881	RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,INSL3->chr19:17927321-17932383:-,insulin_like_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.81	0.97	0.3201	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MEGF8--RAB8A	8	4	MEGF8	7579	chr19:42847783:+	RAB8A	46447	chr19:16244837:+	INCL_NON_REF_SPLICE	YES	38	4	0.24	0.75	0.0854	0.0427	MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.24	0.75	0.1281	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TOP1--ZHX3	5	13	TOP1	2735	chr20:39690130:+	ZHX3	30666	chr20:39897723:-	ONLY_REF_SPLICE	YES	268	1	0.06	0.95	0.0534	0.1387	LOCAL_INVERSION:+:-:[53961],TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I,ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.06	0.95	0.1921	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ZNF266--ADCK4	3	21	ZNF266	2504	chr19:9544751:-	ADCK4	20003	chr19:41211352:-	ONLY_REF_SPLICE	YES	28	35	0.46	0.41	0.032	0.2241	ZNF266->chr19:9523272-9546254:-,zinc_finger_protein_266,ADCK4->aarF_domain_containing_kinase_4,chr19:41197434-41224112:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.41	0.46	0.2561	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ZNF266--ADCK4	3	21	ZNF266	2514	chr19:9544741:-	ADCK4	20003	chr19:41211352:-	ONLY_REF_SPLICE	YES	28	35	0.46	0.41	0.032	0.2241	ZNF266->chr19:9523272-9546254:-,zinc_finger_protein_266,ADCK4->aarF_domain_containing_kinase_4,chr19:41197434-41224112:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.41	0.46	0.2561	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MYO5A--FAM214A	6	6	MYO5A	1271	chr15:52820977:-	FAM214A	68858	chr15:52893362:-	ONLY_REF_SPLICE	YES	5	12	0.71	0.5	0.064	0.064	LOCAL_REARRANGEMENT:-:[52267],MYO5A->chr15:52599480-52821247:-,myosin_VA,FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A	LN464_CENTRAL_NERVOUS_SYSTEM	0.5	0.71	0.128	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NRG3--USP54	5	7	NRG3	1850	chr10:83635919:+	USP54	37504	chr10:75305430:-	ONLY_REF_SPLICE	YES	33	19	0.27	0.39	0.0534	0.0747	NRG3->chr10:83635070-84746935:+,neuregulin_3,USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54	LN464_CENTRAL_NERVOUS_SYSTEM	0.27	0.39	0.1281	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MEGF8--HSH2D	1	20	MEGF8	6424	chr19:42841358:+	HSH2D	36594	chr19:16252751:+	ONLY_REF_SPLICE	YES	39	0	0.35	1	0.0107	0.2134	MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,HSH2D->chr19:16244838-16269386:+,hematopoietic_SH2_domain_containing	LN464_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.2241	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MEGF8--HSH2D	1	20	MEGF8	7579	chr19:42847783:+	HSH2D	37747	chr19:16254442:+	ONLY_REF_SPLICE	NO	38	0	0.36	1	0.0107	0.2134	MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,HSH2D->chr19:16244838-16269386:+,hematopoietic_SH2_domain_containing	LN464_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.2241	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SAMD4A--MAPK1IP1L	3	8	SAMD4A	2016	chr14:55034830:+	MAPK1IP1L	39677	chr14:55529336:+	ONLY_REF_SPLICE	YES	50	242	0.18	0.04	0.032	0.0854	SAMD4A->chr14:55033815-55260033:+,sterile_alpha_motif_domain_containing_4A,MAPK1IP1L->chr14:55518349-55536910:+,mitogen-activated_protein_kinase_1_interacting_protein_1-like	LN464_CENTRAL_NERVOUS_SYSTEM	0.04	0.18	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TMEM170A--BCAR1	1	15	TMEM170A	2266	chr16:75498130:-	BCAR1	24931	chr16:75276988:-	ONLY_REF_SPLICE	NO	52	10	0.24	0.62	0.0107	0.1601	TMEM170A->chr16:75476952-75499395:-,transmembrane_protein_170A,BCAR1->BCAR1,_Cas_family_scaffolding_protein,chr16:75262928-75301951:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.24	0.62	0.1708	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ZNF266--ADCK4	1	14	ZNF266	1781	chr19:9545474:-	ADCK4	20003	chr19:41211352:-	ONLY_REF_SPLICE	YES	38	35	0.28	0.3	0.0107	0.1494	ZNF266->chr19:9523272-9546254:-,zinc_finger_protein_266,ADCK4->aarF_domain_containing_kinase_4,chr19:41197434-41224112:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.28	0.3	0.1601	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ZNF541--ZNF382	3	5	ZNF541	7246	chr19:48043384:-	ZNF382	18677	chr19:37096028:+	INCL_NON_REF_SPLICE	YES	1	1	0.89	0.89	0.032	0.0534	HGNC_GENEFAM,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541,ZNF382->chr19:37095719-37119499:+,zinc_finger_protein_382	LN464_CENTRAL_NERVOUS_SYSTEM	0.89	0.89	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ENO1--EEF2	4	0	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0427	TRUE	0	0	0	9	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NFIC--ZNF14	3	0	NFIC	1123	chr19:3359683:+	ZNF14	26819	chr19:19825296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C,ZNF14->chr19:19821280-19843906:-,zinc_finger_protein_14	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NUBP2--RP11-296I10.3	3	0	NUBP2	1136	chr16:1833037:+	RP11-296I10.3	14617	chr16:70192792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,RP11-296I10.3->chr16:70190243-70207351:-	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	UBE2L3--HDLBP	3	0	UBE2L3	4131	chr22:21947245:+	HDLBP	29769	chr2:242189395:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	LIMD1--LARS2	1	7	LIMD1	7325	chr3:45677743:+	LARS2	51853	chr3:45588843:+	ONLY_REF_SPLICE	YES	8	127	0.5	0.06	0.0107	0.0747	LOCAL_REARRANGEMENT:+:[5973],LIMD1->LIM_domains_containing_1,Oncogene{Bushman},chr3:45596886-45727830:+,LARS2->chr3:45429998-45590913:+,leucyl-tRNA_synthetase_2,_mitochondrial	LN464_CENTRAL_NERVOUS_SYSTEM	0.06	0.5	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	WWOX--CA5A	2	2	WWOX	6262	chr16:78149051:+	CA5A	37512	chr16:87936126:-	ONLY_REF_SPLICE	YES	15	1	0.21	0.8	0.0213	0.0213	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.21	0.8	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	GNG12--RP11-318C4.2	2	1	GNG12	1124	chr1:68299027:-	RP11-318C4.2	17008	chr10:124528842:+	ONLY_REF_SPLICE	YES	76	0	0.04	1	0.0213	0.0107	GNG12->G_protein_subunit_gamma_12,chr1:68167149-68299150:-,RP11-318C4.2->chr10:124516210-124558696:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	CD302--CHD1L	2	0	CD302	1111	chr2:160654643:-	CHD1L	26210	chr1:146747017:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	CD302->CD302_molecule,chr2:160625364-160654753:-,CHD1L->chr1:146714291-146767443:+,chromodomain_helicase_DNA_binding_protein_1-like	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	CTC-228N24.2--CTC-228N24.3	2	0	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	1	0	12	1	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	DDT--MEIS2	2	0	DDT	4753	chr22:24315957:-	MEIS2	27792	chr15:37188887:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	DDT->D-dopachrome_tautomerase,chr22:24313554-24322660:-,MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NRG3--USP54	2	0	NRG3	1850	chr10:83635919:+	USP54	44954	chr10:75290593:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	NRG3->chr10:83635070-84746935:+,neuregulin_3,USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RCC1--PCCA	2	0	RCC1	2175	chr1:28834672:+	PCCA	44867	chr13:101077887:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SLC39A10--DLG1	2	0	SLC39A10	3739	chr2:196522005:+	DLG1	54521	chr3:196796131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SNHG16--TMF1	2	0	SNHG16	1092	chr17:74553939:+	TMF1	23215	chr3:69077446:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,TMF1->TATA_element_modulatory_factor_1,chr3:69068978-69101484:-	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000676
TCCPAN2_PANCREAS	PCGF2--CWC25	18	9	PCGF2	5252	chr17:36896544:-	CWC25	16598	chr17:36971350:-	ONLY_REF_SPLICE	YES	11	10	0.71	0.73	0.2784	0.1392	LOCAL_REARRANGEMENT:-:[50617],PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-	TCCPAN2_PANCREAS	0.71	0.73	0.4176	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	PCGF2--CWC25	9	10	PCGF2	5252	chr17:36896544:-	CWC25	15954	chr17:36971994:-	ONLY_REF_SPLICE	YES	11	7	0.63	0.73	0.1392	0.1547	LOCAL_REARRANGEMENT:-:[50617],PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-	TCCPAN2_PANCREAS	0.63	0.73	0.2939	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	UST--EYS	3	1	UST	3550	chr6:149262570:+	EYS	40114	chr6:65767620:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.0464	0.0155	UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase,EYS->chr6:64429876-66417118:-,eyes_shut_homolog_(Drosophila)	TCCPAN2_PANCREAS	0.22	1	0.0619	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	BLOC1S1--SIPA1L3	3	0	BLOC1S1	3489	chr12:56113393:+	SIPA1L3	40707	chr19:38697454:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	BLOC1S1->biogenesis_of_lysosomal_organelles_complex_1_subunit_1,chr12:56109820-56113871:+,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	DHX35--GNAS	3	0	DHX35	4414	chr20:37612419:+	GNAS	45094	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	DHX35->DEAH-box_helicase_35,chr20:37590942-37668366:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	FGFRL1--TMEM127	3	0	FGFRL1	7567	chr4:1019093:+	TMEM127	21041	chr2:96914812:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,TMEM127->chr2:96914254-96931732:-,transmembrane_protein_127	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	PLEKHM2--HDGF	3	0	PLEKHM2	9252	chr1:16053684:+	HDGF	28158	chr1:156713510:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2,HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	TIAM2--ABHD2	3	0	TIAM2	15383	chr6:155411513:+	ABHD2	63469	chr15:89694908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	TIAM2->T-cell_lymphoma_invasion_and_metastasis_2,chr6:155153831-155578857:+,ABHD2->Oncogene{Bushman},abhydrolase_domain_containing_2,chr15:89630690-89745591:+	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	VASP--CCPG1	3	0	VASP	4698	chr19:46024647:+	CCPG1	13565	chr15:55700436:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	VASP->chr19:46009837-46030241:+,vasodilator-stimulated_phosphoprotein,CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	ZC3H7A--ABHD14B	3	0	ZC3H7A	23403	chr16:11846560:-	ABHD14B	31580	chr3:52005563:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,ABHD14B->abhydrolase_domain_containing_14B,chr3:52002526-52017425:-	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	CCNT2--UBE3C	2	0	CCNT2	5318	chr2:135696632:+	UBE3C	41989	chr7:157023774:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	CCNT2->chr2:135675805-135716912:+,cyclin_T2,UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	COG3--ITM2B	2	0	COG3	1286	chr13:46039345:+	ITM2B	32024	chr13:48827944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},COG3->chr13:46039060-46110765:+,component_of_oligomeric_golgi_complex_3,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	CYSTM1--ATAD3C	2	0	CYSTM1	1644	chr5:139554870:+	ATAD3C	12030	chr1:1386061:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1,ATAD3C->ATPase_family,_AAA_domain_containing_3C,chr1:1385069-1405538:+	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	FAS--STAMBPL1	2	0	FAS	1250	chr10:90750663:+	STAMBPL1	27470	chr10:90676437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[15504],FAS->ArcherDX_panel,Fas_cell_surface_death_receptor,FoundationOne_panel,Oncogene{Bushman},chr10:90750414-90775542:+,STAMBPL1->STAM_binding_protein_like_1,chr10:90639491-90734910:+	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	HCN2--TCFL5	2	0	HCN2	1685	chr19:590577:+	TCFL5	15227	chr20:61491660:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	HCN2->chr19:589893-617159:+,hyperpolarization_activated_cyclic_nucleotide_gated_potassium_channel_2,TCFL5->chr20:61472467-61493115:-,transcription_factor_like_5	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	IFNGR2--MIB1	2	0	IFNGR2	5800	chr21:34793992:+	MIB1	17550	chr18:19345733:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1),MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	KIAA1715--OLA1	2	0	KIAA1715	1680	chr2:176866888:-	OLA1	32574	chr2:175006728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	KIAA1715->KIAA1715,chr2:176788620-176867567:-,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	PPFIBP2--STK38	2	0	PPFIBP2	13354	chr11:7618904:+	STK38	43853	chr6:36493419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	PPFIBP2->PPFIA_binding_protein_2,chr11:7534529-7678358:+,STK38->chr6:36461669-36515247:-,serine/threonine_kinase_38	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	RP11-16D22.2--ILK	2	0	RP11-16D22.2	1082	chr13:34922261:+	ILK	11001	chr11:6630115:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	RP11-16D22.2->chr13:34922180-35188307:+,ILK->chr11:6624961-6632102:+,integrin_linked_kinase	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	RP11-762I7.5--GLS	2	0	RP11-762I7.5	14638	chr12:56182859:-	GLS	34108	chr2:191792032:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	RP11-762I7.5->chr12:56151059-56221330:-,GLS->chr2:191745553-191830278:+,glutaminase	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	SGK2--RP11-762I7.5	2	0	SGK2	1192	chr20:42187799:+	RP11-762I7.5	28538	chr12:56189860:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	SGK2->SGK2,_serine/threonine_kinase_2,chr20:42187608-42216877:+,RP11-762I7.5->chr12:56151059-56221330:-	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	TJP2--PCBP1-AS1	2	0	TJP2	22063	chr9:71855063:+	PCBP1-AS1	49058	chr2:70278437:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	TJP2->Oncogene{Bushman},chr9:71736209-71870124:+,tight_junction_protein_2,PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	UBAC2--TNNT1	2	0	UBAC2	14124	chr13:100020160:+	TNNT1	23561	chr19:55658075:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,TNNT1->chr19:55644162-55660722:-,troponin_T1,_slow_skeletal_type	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	VPS9D1--C11orf48	2	0	VPS9D1	3928	chr16:89782870:-	C11orf48	20367	chr11:62430805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	VPS9D1->VPS9_domain_containing_1,chr16:89773542-89787394:-,C11orf48->chr11:62430287-62439727:-	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	ZNF267--FUS	2	0	ZNF267	4304	chr16:31896577:+	FUS	21888	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	ZNF267->chr16:31885079-31928668:+,zinc_finger_protein_267,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
HS737T_FIBROBLAST	COL1A1--COL4A2	592	0	COL1A1	2858	chr17:48276917:-	COL4A2	63031	chr13:111155801:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	7.3135	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	1	1	7.3135	TRUE	0	0	0	1	0	TRUE	ACH-000185
HS737T_FIBROBLAST	GAS6--LTBP2	25	0	GAS6	7801	chr13:114538486:-	LTBP2	43349	chr14:74974798:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3088	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=6;pct=0.07%;dist=Cells_-_Transformed_fibroblasts=4,Artery_-_Aorta=1,Uterus=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2	HS737T_FIBROBLAST	1	1	0.3088	TRUE	0	0	0	1	0	TRUE	ACH-000185
HS737T_FIBROBLAST	GAS6--COL1A2	4	0	GAS6	10639	chr13:114535648:-	COL1A2	46301	chr7:94054469:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0	GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS737T_FIBROBLAST	1	1	0.0494	TRUE	0	0	0	1	0	TRUE	ACH-000185
HS737T_FIBROBLAST	LOXL2--THBS1	4	0	LOXL2	10231	chr8:23190965:-	THBS1	28331	chr15:39874672:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0	LOXL2->Oncogene{Bushman},chr8:23154702-23282841:-,lysyl_oxidase_like_2,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS737T_FIBROBLAST	1	1	0.0494	TRUE	0	0	0	1	0	TRUE	ACH-000185
HS737T_FIBROBLAST	NUDT3--CDH4	2	1	NUDT3	1411	chr6:34360041:-	CDH4	28394	chr20:60485478:+	ONLY_REF_SPLICE	YES	44	7	0.06	0.3	0.0247	0.0124	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,CDH4->cadherin_4,chr20:59827482-60515673:+	HS737T_FIBROBLAST	0.06	0.3	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000185
HS737T_FIBROBLAST	RP11-680G10.1--RP11-830F9.5	1	1	RP11-680G10.1	1181	chr16:85391249:+	RP11-830F9.5	7116	chr16:88949923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0124	0.0124	RP11-680G10.1->chr16:85391069-85393055:+,RP11-830F9.5->chr16:88947446-88953544:+	HS737T_FIBROBLAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000185
HCC2450_LUNG	CPSF6--NTS	413	290	CPSF6	11046	chr12:69656342:+	NTS	23679	chr12:86276001:+	ONLY_REF_SPLICE	YES	59	11	0.92	0.98	4.4011	3.0904	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NTS->chr12:86268073-86276770:+,neurotensin	HCC2450_LUNG	0.92	0.98	7.4915	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	MED13L--LYZ	397	269	MED13L	3147	chr12:116675273:-	LYZ	43875	chr12:69743888:+	ONLY_REF_SPLICE	YES	16	1	0.98	1	4.2306	2.8666	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,LYZ->chr12:69742121-69748014:+,lysozyme	HCC2450_LUNG	0.98	1	7.0972	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	EIF2AK3--HNRNPLL	343	157	EIF2AK3	3924	chr2:88913242:-	HNRNPLL	29155	chr2:38818790:-	ONLY_REF_SPLICE	YES	25	125	0.95	0.8	3.6551	1.6731	EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HCC2450_LUNG	0.8	0.95	5.3282	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	FLNB--SLMAP	61	63	FLNB	32206	chr3:58124256:+	SLMAP	64698	chr3:57843460:+	ONLY_REF_SPLICE	YES	283	37	0.3	0.77	0.65	0.6714	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	HCC2450_LUNG	0.3	0.77	1.3214	TRUE	0	1	0	1	1	TRUE	ACH-000975
HCC2450_LUNG	GMEB2--STMN3	66	23	GMEB2	2696	chr20:62250620:-	STMN3	18291	chr20:62275662:-	ONLY_REF_SPLICE	YES	14	7	0.86	0.93	0.7033	0.2451	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[12667],GMEB2->chr20:62218955-62258394:-,glucocorticoid_modulatory_element_binding_protein_2,STMN3->chr20:62271061-62284780:-,stathmin_3	HCC2450_LUNG	0.86	0.93	0.9484	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	MED13L--LYZ	39	97	MED13L	3147	chr12:116675273:-	LYZ	45274	chr12:69746000:+	ONLY_REF_SPLICE	YES	16	144	0.89	0.49	0.4156	1.0337	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,LYZ->chr12:69742121-69748014:+,lysozyme	HCC2450_LUNG	0.49	0.89	1.4493	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	TAF3--AKR1C4	34	10	TAF3	2615	chr10:7866523:+	AKR1C4	14675	chr10:5237428:+	INCL_NON_REF_SPLICE	YES	43	0	0.51	1	0.3623	0.1066	TAF3->TATA-box_binding_protein_associated_factor_3,chr10:7860467-8058590:+,AKR1C4->aldo-keto_reductase_family_1,_member_C4,chr10:5237425-5260912:+	HCC2450_LUNG	0.51	1	0.4689	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	GNAQ--PRUNE2	28	23	GNAQ	7652	chr9:80409379:-	PRUNE2	27936	chr9:79328637:-	ONLY_REF_SPLICE	YES	112	0	0.31	1	0.2984	0.2451	GNAQ->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_q,Oncogene{Bushman},OncomapV4_panel,chr9:80331003-80646374:-,PRUNE2->chr9:79226292-79521003:-,prune_homolog_2_(Drosophila)	HCC2450_LUNG	0.31	1	0.5435	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	TNRC18--ZSCAN25	23	13	TNRC18	37459	chr7:5347587:-	ZSCAN25	43610	chr7:99216671:+	INCL_NON_REF_SPLICE	YES	169	31	0.18	0.54	0.2451	0.1385	TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,ZSCAN25->chr7:99214569-99230030:+,zinc_finger_and_SCAN_domain_containing_25	HCC2450_LUNG	0.18	0.54	0.3836	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	EIF2AK3--HNRNPLL	4	67	EIF2AK3	3924	chr2:88913242:-	HNRNPLL	30274	chr2:38813023:-	ONLY_REF_SPLICE	YES	25	201	0.74	0.26	0.0426	0.714	EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HCC2450_LUNG	0.26	0.74	0.7566	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	SMAP1--RP1-90L14.1	17	9	SMAP1	8614	chr6:71508440:+	RP1-90L14.1	26296	chr6:85130960:-	ONLY_REF_SPLICE	YES	47	4	0.36	0.87	0.1812	0.0959	SMAP1->Oncogene{Bushman},chr6:71377479-71571718:+,small_ArfGAP_1,RP1-90L14.1->chr6:85130746-85265870:-	HCC2450_LUNG	0.36	0.87	0.2771	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	ADAMTS10--C19orf38	17	0	ADAMTS10	1092	chr19:8675529:-	C19orf38	29442	chr19:10979894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1812	0	ADAMTS10->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_10,chr19:8645126-8675620:-,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	HCC2450_LUNG	1	1	0.1812	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CTC-301O7.4--DKKL1	17	0	CTC-301O7.4	1378	chr19:49843488:-	DKKL1	11078	chr19:49877974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1812	0	LOCAL_INVERSION:-:+:[21175],CTC-301O7.4->chr19:49834874-49843865:-,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	1	1	0.1812	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	STAG1--ACAD11	15	6	STAG1	27179	chr3:136117591:-	ACAD11	58903	chr3:132324049:-	ONLY_REF_SPLICE	YES	46	34	0.31	0.38	0.1598	0.0639	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,ACAD11->acyl-CoA_dehydrogenase_family_member_11,chr3:132276982-132379567:-	HCC2450_LUNG	0.31	0.38	0.2237	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	NET1--CELF2	14	9	NET1	4384	chr10:5471192:+	CELF2	20301	chr10:11259388:+	ONLY_REF_SPLICE	YES	77	67	0.23	0.26	0.1492	0.0959	NET1->Oncogene{Bushman},chr10:5454514-5500426:+,neuroepithelial_cell_transforming_1,CELF2->CUGBP,_Elav-like_family_member_2,chr10:11047259-11378674:+	HCC2450_LUNG	0.23	0.26	0.2451	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	MED13L--LYZ	9	15	MED13L	1279	chr12:116714865:-	LYZ	43875	chr12:69743888:+	ONLY_REF_SPLICE	YES	27	1	0.47	0.96	0.0959	0.1598	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,LYZ->chr12:69742121-69748014:+,lysozyme	HCC2450_LUNG	0.47	0.96	0.2557	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	DST--BEND6	4	13	DST	1204	chr6:56819223:-	BEND6	130833	chr6:56846509:+	INCL_NON_REF_SPLICE	YES	7	28	0.71	0.38	0.0426	0.1385	LOCAL_INVERSION:-:+:[347],DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,BEND6->BEN_domain_containing_6,chr6:56819773-56892140:+	HCC2450_LUNG	0.38	0.71	0.1811	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	TRAF3--RCOR1	7	1	TRAF3	1200	chr14:103244012:+	RCOR1	36886	chr14:103192805:+	ONLY_REF_SPLICE	YES	5	90	0.62	0.08	0.0746	0.0107	LOCAL_REARRANGEMENT:+:[46900],TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+,RCOR1->REST_corepressor_1,chr14:103058998-103196913:+	HCC2450_LUNG	0.08	0.62	0.0853	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CCP110--MAPK11	6	4	CCP110	10129	chr16:19552109:+	MAPK11	27301	chr22:50703923:-	ONLY_REF_SPLICE	YES	38	15	0.21	0.4	0.0639	0.0426	CCP110->centriolar_coiled-coil_protein_110kDa,chr16:19535133-19564730:+,MAPK11->chr22:50702142-50709196:-,mitogen-activated_protein_kinase_11	HCC2450_LUNG	0.21	0.4	0.1065	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	SERPINE1--GANAB	7	0	SERPINE1	8802	chr7:100780719:+	GANAB	25326	chr11:62393136:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	HCC2450_LUNG	1	1	0.0746	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	TAF3--AKR1C4	5	2	TAF3	2615	chr10:7866523:+	AKR1C4	17162	chr10:5242144:+	ONLY_REF_SPLICE	YES	43	3	0.14	0.7	0.0533	0.0213	TAF3->TATA-box_binding_protein_associated_factor_3,chr10:7860467-8058590:+,AKR1C4->aldo-keto_reductase_family_1,_member_C4,chr10:5237425-5260912:+	HCC2450_LUNG	0.14	0.7	0.0746	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CELF2--AKR1CL1	5	1	CELF2	4032	chr10:11207645:+	AKR1CL1	29529	chr10:5204983:-	ONLY_REF_SPLICE	YES	62	0	0.09	1	0.0533	0.0107	CELF2->CUGBP,_Elav-like_family_member_2,chr10:11047259-11378674:+,AKR1CL1->chr10:5196335-5244449:-	HCC2450_LUNG	0.09	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CTC-301O7.4--DKKL1	5	1	CTC-301O7.4	1437	chr19:49843429:-	DKKL1	11078	chr19:49877974:+	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0533	0.0107	LOCAL_INVERSION:-:+:[21175],CTC-301O7.4->chr19:49834874-49843865:-,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	0.75	0.86	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	NME7--RP11-1113L8.1	5	0	NME7	1260	chr1:169336946:-	RP11-1113L8.1	24742	chr17:19474339:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0533	0	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,RP11-1113L8.1->chr17:19463424-19501235:-	HCC2450_LUNG	1	1	0.0533	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	SLC5A12--SCGB1D2	5	0	SLC5A12	8715	chr11:26725078:-	SCGB1D2	27745	chr11:62010761:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0533	0	SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12,SCGB1D2->chr11:62009682-62012280:+,secretoglobin,_family_1D_member_2	HCC2450_LUNG	1	1	0.0533	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	SLC6A16--DKKL1	4	2	SLC6A16	4714	chr19:49812133:-	DKKL1	18561	chr19:49877974:+	ONLY_REF_SPLICE	YES	4	1	0.6	0.86	0.0426	0.0213	LOCAL_INVERSION:-:+:[36558],SLC6A16->chr19:49792895-49828482:-,solute_carrier_family_6_member_16,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	0.6	0.86	0.0639	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	BDH1--AC024560.3	4	0	BDH1	8504	chr3:197260360:-	AC024560.3	36044	chr3:197320030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	LOCAL_REARRANGEMENT:-:[4890],BDH1->3-hydroxybutyrate_dehydrogenase,_type_1,chr3:197236654-197300194:-,AC024560.3->chr3:197305084-197354777:-	HCC2450_LUNG	1	1	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	ENO1--EEF2	4	0	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	HCC2450_LUNG	1	1	0.0426	TRUE	0	0	0	9	0	TRUE	ACH-000975
HCC2450_LUNG	STX18-AS1--LINC00504	3	4	STX18-AS1	2665	chr4:4546634:+	LINC00504	25473	chr4:14479082:-	ONLY_REF_SPLICE	YES	14	0	0.33	1	0.032	0.0426	HGNC_GENEFAM,STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,LINC00504->chr4:14472089-14889793:-,long_intergenic_non-protein_coding_RNA_504	HCC2450_LUNG	0.33	1	0.0746	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	TP53BP2--RP11-504P24.5	3	1	TP53BP2	1319	chr1:224033356:-	RP11-504P24.5	26275	chr1:224222758:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.032	0.0107	TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2,RP11-504P24.5->chr1:224218406-224222758:-	HCC2450_LUNG	0.22	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	COL1A2--PRDX1	3	0	COL1A2	12861	chr7:94040246:+	PRDX1	37189	chr1:45987556:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PRDX1->Oncogene{Bushman},chr1:45976708-45988719:-,peroxiredoxin_1	HCC2450_LUNG	1	1	0.032	TRUE	0	0	0	2	0	TRUE	ACH-000975
HCC2450_LUNG	CTB-113P19.1--FTL	3	0	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	HCC2450_LUNG	1	1	0.032	TRUE	0	2	0	13	2	TRUE	ACH-000975
HCC2450_LUNG	NME7--RP11-1113L8.1	3	0	NME7	1260	chr1:169336946:-	RP11-1113L8.1	25924	chr17:19467942:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,RP11-1113L8.1->chr17:19463424-19501235:-	HCC2450_LUNG	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	LYVE1--SBF2	2	2	LYVE1	2394	chr11:10589995:-	SBF2	42468	chr11:9871765:-	ONLY_REF_SPLICE	YES	0	23	1	0.15	0.0213	0.0213	LYVE1->chr11:10578513-10633236:-,lymphatic_vessel_endothelial_hyaluronan_receptor_1,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	HCC2450_LUNG	0.15	1	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	STX18-AS1--LINC00504	1	6	STX18-AS1	2665	chr4:4546634:+	LINC00504	22011	chr4:14630604:-	ONLY_REF_SPLICE	YES	14	0	0.33	1	0.0107	0.0639	HGNC_GENEFAM,STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,LINC00504->chr4:14472089-14889793:-,long_intergenic_non-protein_coding_RNA_504	HCC2450_LUNG	0.33	1	0.0746	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	ABI3BP--AC079117.1	2	0	ABI3BP	32813	chr3:100551108:-	AC079117.1	74523	chr2:77214532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	ABI3BP->ABI_family_member_3_binding_protein,chr3:100468000-100712359:-,AC079117.1->chr2:77213091-77236917:+	HCC2450_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CYP24A1--RRP15	2	0	CYP24A1	10936	chr20:52773708:-	RRP15	21269	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	HCC2450_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	DEGS1--CEP72	2	0	DEGS1	2440	chr1:224371120:+	CEP72	22412	chr5:647920:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1,CEP72->centrosomal_protein_72,chr5:612387-667283:+	HCC2450_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	PIGK--ZZZ3	2	0	PIGK	9202	chr1:77620134:-	ZZZ3	27682	chr1:78050340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	PIGK->chr1:77554675-77685115:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_K,ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3	HCC2450_LUNG	1	1	0.0213	TRUE	0	0	0	2	0	TRUE	ACH-000975
HCC2450_LUNG	RP11-463D19.2--TCEB1	2	0	RP11-463D19.2	1047	chr8:74791043:-	TCEB1	16412	chr8:74872053:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:-:[60315],RP11-463D19.2->chr8:74600926-74791089:-,TCEB1->chr8:74851404-74884522:-,transcription_elongation_factor_B_subunit_1	HCC2450_LUNG	1	1	0.0213	TRUE	1	0	0	2	0	TRUE	ACH-000975
HCC2450_LUNG	TP53BP2--RP11-504P24.5	2	0	TP53BP2	1319	chr1:224033356:-	RP11-504P24.5	28428	chr1:224218498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2,RP11-504P24.5->chr1:224218406-224222758:-	HCC2450_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	TUFT1--CAV1	2	0	TUFT1	1122	chr1:151512902:+	CAV1	21211	chr7:116199000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	TUFT1->chr1:151512781-151556059:+,tuftelin_1,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HCC2450_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CTC-301O7.4--DKKL1	1	2	CTC-301O7.4	2704	chr19:49835311:-	DKKL1	11078	chr19:49877974:+	ONLY_REF_SPLICE	NO	9	1	0.25	0.75	0.0107	0.0213	LOCAL_INVERSION:-:+:[21175],CTC-301O7.4->chr19:49834874-49843865:-,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	0.25	0.75	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CTC-301O7.4--DKKL1	1	2	CTC-301O7.4	3141	chr19:49834874:-	DKKL1	11078	chr19:49877974:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0107	0.0213	LOCAL_INVERSION:-:+:[21175],CTC-301O7.4->chr19:49834874-49843865:-,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	0.75	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	SLC6A16--DKKL1	1	2	SLC6A16	3939	chr19:49812908:-	DKKL1	18561	chr19:49877974:+	ONLY_REF_SPLICE	NO	8	1	0.27	0.75	0.0107	0.0213	LOCAL_INVERSION:-:+:[36558],SLC6A16->chr19:49792895-49828482:-,solute_carrier_family_6_member_16,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	0.27	0.75	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CTD-3105H18.16--BMPR1A	1	1	CTD-3105H18.16	1171	chr19:12551726:-	BMPR1A	10137	chr10:88635624:+	ONLY_REF_SPLICE	YES	6	36	0.25	0.05	0.0107	0.0107	CTD-3105H18.16->chr19:12502763-12551896:-,BMPR1A->Oncogene{Bushman},bone_morphogenetic_protein_receptor_type_1A,chr10:88516407-88692595:+	HCC2450_LUNG	0.05	0.25	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	FRMD4A--FAM107B	1	1	FRMD4A	4125	chr10:14372057:-	FAM107B	61917	chr10:14572514:-	ONLY_REF_SPLICE	YES	7	8	0.22	0.2	0.0107	0.0107	LOCAL_REARRANGEMENT:-:[56415],FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-,FAM107B->chr10:14560556-14816896:-,family_with_sequence_similarity_107_member_B	HCC2450_LUNG	0.2	0.22	0.0214	TRUE	0	1	0	3	1	TRUE	ACH-000975
HCC2450_LUNG	SLC6A16--DKKL1	1	1	SLC6A16	3237	chr19:49813610:-	DKKL1	18561	chr19:49877974:+	ONLY_REF_SPLICE	YES	9	1	0.18	0.67	0.0107	0.0107	LOCAL_INVERSION:-:+:[36558],SLC6A16->chr19:49792895-49828482:-,solute_carrier_family_6_member_16,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	0.18	0.67	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000975
HS934T_FIBROBLAST	LIX1L--HFE2	5	2	LIX1L	3671	chr1:145492375:+	HFE2	14919	chr1:145416313:+	ONLY_REF_SPLICE	YES	77	0	0.08	1	0.0592	0.0237	LOCAL_REARRANGEMENT:+:[59540],LIX1L->chr1:145477085-145501669:+,limb_and_CNS_expressed_1_like,HFE2->chr1:145413095-145417545:+,hemochromatosis_type_2_(juvenile)	HS934T_FIBROBLAST	0.08	1	0.0829	TRUE	0	0	0	1	0	TRUE	ACH-000194
HS934T_FIBROBLAST	COL1A1--COL6A2	4	0	COL1A1	2548	chr17:48277227:-	COL6A2	37395	chr21:47546057:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS934T_FIBROBLAST	1	1	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000194
HS934T_FIBROBLAST	JUND--MT2A	4	0	JUND	1481	chr19:18391952:-	MT2A	6254	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	JUND->JunD_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr19:18390563-18392432:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS934T_FIBROBLAST	1	1	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000194
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	208	66	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	24	0	0.92	1	1.758	0.5578	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	2.3158	TRUE	0	2	1	16	2	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	70	27	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	0	19	1	0.84	0.5916	0.2282	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	0.8198	TRUE	0	2	0	9	2	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	3	65	BCR	21553	chr22:23632600:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	24	0	0.74	1	0.0254	0.5494	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	0.5748	TRUE	0	2	1	16	2	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	12	15	ABL1	1510	chr9:133589842:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	0	30	1	0.47	0.1014	0.1268	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.2282	TRUE	0	0	0	6	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	3	38	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	29	0	0.59	1	0.0254	0.3212	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.3466	TRUE	0	2	1	16	2	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	3	7	ABL1	1510	chr9:133589842:+	BCR	48463	chr22:23651611:+	ONLY_REF_SPLICE	YES	0	66	1	0.13	0.0254	0.0592	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0846	TRUE	0	1	0	5	1	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--SUMO2	4	0	JSRP1	1202	chr19:2269557:-	SUMO2	10431	chr17:73179054:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	TRUE	0	0	0	2	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TBCA	4	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	TRUE	0	3	0	7	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-498C9.2--PRTN3	3	1	RP11-498C9.2	1779	chr17:79801819:+	PRTN3	4870	chr19:841038:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.8	0.0254	0.0085	RP11-498C9.2->chr17:79801041-79801834:+,PRTN3->chr19:840963-848175:+,proteinase_3	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSTF3--HIPK3	3	0	CSTF3	2073	chr11:33182845:-	HIPK3	32381	chr11:33350056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_INVERSION:-:+:[94301],CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3,HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRFBP1--TNFAIP8	3	0	SRFBP1	3270	chr5:121311082:+	TNFAIP8	22576	chr5:118728511:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	SRFBP1->chr5:121297656-121411265:+,serum_response_factor_binding_protein_1,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001432.14--TTC3	2	1	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	78	1	0.04	0.0169	0.0085	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0254	TRUE	0	0	0	15	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--IRF2BP2	2	0	CPSF6	11046	chr12:69656342:+	IRF2BP2	21567	chr1:234743598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	9	0	3	1	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FDPS--NAP1L4	2	0	FDPS	3847	chr1:155282186:+	NAP1L4	17986	chr11:3000467:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCAPH--MCM8	2	0	NCAPH	10839	chr2:97026448:+	MCM8	21694	chr20:5932657:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	NCAPH->chr2:97001525-97039583:+,non-SMC_condensin_I_complex_subunit_H,MCM8->chr20:5931298-5975852:+,minichromosome_maintenance_8_homologous_recombination_repair_factor	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000295
NCIH647_LUNG	NRCAM--PNPLA8	215	46	NRCAM	1475	chr7:108096687:-	PNPLA8	53857	chr7:108143086:-	ONLY_REF_SPLICE	YES	126	56	0.67	0.82	1.8952	0.4055	LOCAL_REARRANGEMENT:-:[13705],NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule,PNPLA8->chr7:108110866-108210110:-,patatin_like_phospholipase_domain_containing_8	NCIH647_LUNG	0.67	0.82	2.3007	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	52	26	PVT1	1202	chr8:128806980:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	124	0	0.39	1	0.4584	0.2292	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.39	1	0.6876	TRUE	0	2	0	3	2	TRUE	ACH-000378
NCIH647_LUNG	MYO9B--CTD-2291D10.4	43	13	MYO9B	11172	chr19:17273276:+	CTD-2291D10.4	44168	chr19:23258137:+	INCL_NON_REF_SPLICE	YES	124	1	0.31	0.98	0.379	0.1146	MYO9B->chr19:17186591-17325346:+,myosin_IXB,CTD-2291D10.4->chr19:23258003-23283163:+	NCIH647_LUNG	0.31	0.98	0.4936	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	WIPI2--DPY19L1	24	6	WIPI2	3967	chr7:5239289:+	DPY19L1	30946	chr7:35029553:-	ONLY_REF_SPLICE	YES	28	40	0.52	0.43	0.2116	0.0529	WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+,DPY19L1->chr7:34968488-35077883:-,dpy-19_like_1_(C._elegans)	NCIH647_LUNG	0.43	0.52	0.2645	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	MYO9B--CTD-2291D10.4	23	9	MYO9B	10055	chr19:17270294:+	CTD-2291D10.4	44168	chr19:23258137:+	INCL_NON_REF_SPLICE	YES	137	1	0.19	0.97	0.2027	0.0793	MYO9B->chr19:17186591-17325346:+,myosin_IXB,CTD-2291D10.4->chr19:23258003-23283163:+	NCIH647_LUNG	0.19	0.97	0.282	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	UBXN4--R3HDM1	19	12	UBXN4	3847	chr2:136505939:+	R3HDM1	45367	chr2:136432902:+	ONLY_REF_SPLICE	YES	223	48	0.12	0.39	0.1675	0.1058	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:2],LOCAL_REARRANGEMENT:+:[16349],UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	NCIH647_LUNG	0.12	0.39	0.2733	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	AP4S1--NUBPL	19	10	AP4S1	1682	chr14:31494993:+	NUBPL	29073	chr14:32142561:+	ONLY_REF_SPLICE	YES	29	19	0.5	0.6	0.1675	0.0881	AP4S1->adaptor_related_protein_complex_4_sigma_1_subunit,chr14:31494312-31562818:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	NCIH647_LUNG	0.5	0.6	0.2556	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	13	27	PVT1	2457	chr8:128808254:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	137	0	0.23	1	0.1146	0.238	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.23	1	0.3526	TRUE	0	2	0	3	2	TRUE	ACH-000378
NCIH647_LUNG	UBXN4--R3HDM1	14	15	UBXN4	5586	chr2:136511847:+	R3HDM1	45367	chr2:136432902:+	ONLY_REF_SPLICE	YES	194	48	0.13	0.38	0.1234	0.1322	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:2],LOCAL_REARRANGEMENT:+:[16349],UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	NCIH647_LUNG	0.13	0.38	0.2556	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	3	27	PVT1	1202	chr8:128806980:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	124	0	0.19	1	0.0264	0.238	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.19	1	0.2644	TRUE	0	1	0	3	1	TRUE	ACH-000378
NCIH647_LUNG	AP4S1--NUBPL	7	8	AP4S1	1682	chr14:31494993:+	NUBPL	29202	chr14:32142690:+	ONLY_REF_SPLICE	YES	29	20	0.34	0.43	0.0617	0.0705	AP4S1->adaptor_related_protein_complex_4_sigma_1_subunit,chr14:31494312-31562818:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	NCIH647_LUNG	0.34	0.43	0.1322	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	2	28	PVT1	2520	chr8:128808317:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	146	0	0.17	1	0.0176	0.2468	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.17	1	0.2644	TRUE	0	1	0	3	1	TRUE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	2	27	PVT1	2520	chr8:128808317:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	146	0	0.17	1	0.0176	0.238	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.17	1	0.2556	TRUE	0	2	0	3	2	TRUE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	1	28	PVT1	2457	chr8:128808254:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	137	0	0.17	1	0.0088	0.2468	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.17	1	0.2556	TRUE	0	1	0	3	1	TRUE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	6	3	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34734	chr8:129435839:-	ONLY_REF_SPLICE	YES	124	7	0.07	0.56	0.0529	0.0264	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.07	0.56	0.0793	TRUE	0	1	0	3	0	TRUE	ACH-000378
NCIH647_LUNG	SPATA5--SEC24D	6	1	SPATA5	8357	chr4:123859404:+	SEC24D	47961	chr4:119674043:-	ONLY_REF_SPLICE	YES	3	38	0.7	0.16	0.0529	0.0088	SPATA5->chr4:123844229-124240605:+,spermatogenesis_associated_5,SEC24D->SEC24_homolog_D,_COPII_coat_complex_component,chr4:119643978-119759838:-	NCIH647_LUNG	0.16	0.7	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	DPY19L1--WIPI2	5	1	DPY19L1	6290	chr7:35050080:-	WIPI2	36627	chr7:5254166:+	ONLY_REF_SPLICE	YES	46	23	0.12	0.21	0.0441	0.0088	DPY19L1->chr7:34968488-35077883:-,dpy-19_like_1_(C._elegans),WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+	NCIH647_LUNG	0.12	0.21	0.0529	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	4	3	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34727	chr8:129435846:-	INCL_NON_REF_SPLICE	YES	124	9	0.05	0.44	0.0353	0.0264	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.05	0.44	0.0617	TRUE	0	1	0	3	0	TRUE	ACH-000378
NCIH647_LUNG	ENO1--EEF2	4	0	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	NCIH647_LUNG	1	1	0.0353	TRUE	0	0	0	9	0	TRUE	ACH-000378
NCIH647_LUNG	WIPI2--DPY19L1	4	0	WIPI2	1306	chr7:5230124:+	DPY19L1	30946	chr7:35029553:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0353	0	WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+,DPY19L1->chr7:34968488-35077883:-,dpy-19_like_1_(C._elegans)	NCIH647_LUNG	1	1	0.0353	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	3	3	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34720	chr8:129435853:-	INCL_NON_REF_SPLICE	YES	124	9	0.05	0.4	0.0264	0.0264	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.05	0.4	0.0528	TRUE	0	1	0	3	0	TRUE	ACH-000378
NCIH647_LUNG	NRCAM--PNPLA8	3	0	NRCAM	1475	chr7:108096687:-	PNPLA8	57160	chr7:108131911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	LOCAL_REARRANGEMENT:-:[13705],NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule,PNPLA8->chr7:108110866-108210110:-,patatin_like_phospholipase_domain_containing_8	NCIH647_LUNG	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	AP4S1--NUBPL	2	3	AP4S1	1682	chr14:31494993:+	NUBPL	32589	chr14:32256986:+	ONLY_REF_SPLICE	YES	29	19	0.15	0.21	0.0176	0.0264	AP4S1->adaptor_related_protein_complex_4_sigma_1_subunit,chr14:31494312-31562818:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	NCIH647_LUNG	0.15	0.21	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	PODXL--TRBC2	2	3	PODXL	2958	chr7:131241019:-	TRBC2	16755	chr7:142498725:+	ONLY_REF_SPLICE	YES	32	0	0.14	1	0.0176	0.0264	PODXL->chr7:131185021-131242976:-,podocalyxin_like,TRBC2->T_cell_receptor_beta_constant_2,chr7:142498725-142500432:+	NCIH647_LUNG	0.14	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	TEC--SGCB	2	1	TEC	8518	chr4:48165719:-	SGCB	24661	chr4:52899806:-	ONLY_REF_SPLICE	YES	10	4	0.23	0.43	0.0176	0.0088	TEC->chr4:48137800-48271881:-,tec_protein_tyrosine_kinase,SGCB->chr4:52886872-52904648:-,sarcoglycan_beta	NCIH647_LUNG	0.23	0.43	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	AMBRA1--RPL30	2	0	AMBRA1	17529	chr11:46515158:-	RPL30	32417	chr8:99057627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	NCIH647_LUNG	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	LRP8--RP11-29G8.3	2	0	LRP8	21889	chr1:53716362:-	RP11-29G8.3	34665	chr13:76195899:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	LRP8->LDL_receptor_related_protein_8,chr1:53711217-53793742:-,RP11-29G8.3->chr13:76123909-76381256:+	NCIH647_LUNG	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	MYO1C--PITPNA	2	0	MYO1C	2213	chr17:1394894:-	PITPNA	30211	chr17:1461853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[24906],MYO1C->chr17:1367392-1396106:-,myosin_IC,PITPNA->chr17:1421012-1466110:-,phosphatidylinositol_transfer_protein_alpha	NCIH647_LUNG	1	1	0.0176	TRUE	1	3	0	2	2	TRUE	ACH-000378
NCIH647_LUNG	RCC1--FAF1	2	0	RCC1	2175	chr1:28834672:+	FAF1	30597	chr1:51061888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	NCIH647_LUNG	1	1	0.0176	TRUE	0	1	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	WIPI2--DPY19L1	1	4	WIPI2	3967	chr7:5239289:+	DPY19L1	33269	chr7:35013217:-	ONLY_REF_SPLICE	YES	28	50	0.15	0.09	0.0088	0.0353	WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+,DPY19L1->chr7:34968488-35077883:-,dpy-19_like_1_(C._elegans)	NCIH647_LUNG	0.09	0.15	0.0441	TRUE	0	0	0	1	0	TRUE	ACH-000378
HS751T_FIBROBLAST	PRKD1--CTD-2251F13.1	2	1	PRKD1	1600	chr14:30660505:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0.0113	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	HS751T_FIBROBLAST	1	1	0.0339	TRUE	0	1	0	5	1	TRUE	ACH-000165
HS751T_FIBROBLAST	DDAH1--RP11-290M5.2	2	0	DDAH1	3294	chr1:86041515:-	RP11-290M5.2	24699	chr1:86066264:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_INVERSION:-:+:[20881],DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,RP11-290M5.2->chr1:86064814-86066417:+	HS751T_FIBROBLAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000165
HS751T_FIBROBLAST	FAM229B--ARHGAP24	2	0	FAM229B	1122	chr6:112408923:+	ARHGAP24	19956	chr4:86844801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	FAM229B->chr6:112408802-112423993:+,family_with_sequence_similarity_229_member_B,ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+	HS751T_FIBROBLAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000165
HS751T_FIBROBLAST	NAA60--MYL12A	2	0	NAA60	1084	chr16:3415182:+	MYL12A	27791	chr18:3249359:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NAA60->N(alpha)-acetyltransferase_60,_NatF_catalytic_subunit,chr16:3415099-3536960:+,chr16:3493611-3536963:+,MYL12A->chr18:3247479-3256234:+,myosin_light_chain_12A	HS751T_FIBROBLAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000165
HS751T_FIBROBLAST	UBL3--KATNAL1	2	0	UBL3	2173	chr13:30423649:-	KATNAL1	16973	chr13:30815223:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,KATNAL1->chr13:30776767-30881621:-,katanin_catalytic_subunit_A1_like_1	HS751T_FIBROBLAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000165
WM793_SKIN	MAD1L1--SNX8	47	13	MAD1L1	3153	chr7:2269619:-	SNX8	53489	chr7:2309274:-	ONLY_REF_SPLICE	YES	53	100	0.53	0.38	0.5181	0.1433	LOCAL_REARRANGEMENT:-:[18527],MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,SNX8->chr7:2291405-2393953:-,sorting_nexin_8	WM793_SKIN	0.38	0.53	0.6614	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	AKT3--CEP170	8	3	AKT3	3500	chr1:244006427:-	CEP170	53263	chr1:243333056:-	ONLY_REF_SPLICE	YES	5	29	0.69	0.28	0.0882	0.0331	{Klijn_CCL:Head-Neck=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	WM793_SKIN	0.28	0.69	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	AKT3--CEP170	3	3	AKT3	3500	chr1:244006427:-	CEP170	55034	chr1:243329418:-	ONLY_REF_SPLICE	YES	5	35	0.55	0.15	0.0331	0.0331	{Klijn_CCL:Head-Neck=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	WM793_SKIN	0.15	0.55	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	XXbac-BPG252P9.9--SERPINE1	3	0	XXbac-BPG252P9.9	1463	chr6:30691192:-	SERPINE1	13741	chr7:100781885:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	XXbac-BPG252P9.9->chr6:30690882-30691654:-,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	WM793_SKIN	1	1	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	CCDC150--KCNMB2	2	2	CCDC150	2389	chr2:197511228:+	KCNMB2	40923	chr3:178525131:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.022	0.022	CCDC150->chr2:197504278-197628214:+,coiled-coil_domain_containing_150,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	WM793_SKIN	0.8	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	ADAMTS6--NDUFS4	2	0	ADAMTS6	2954	chr5:64769404:-	NDUFS4	43407	chr5:52954381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ADAMTS6->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_6,chr5:64444563-64777747:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	AP1S1--INTS8	2	0	AP1S1	2435	chr7:100800053:+	INTS8	37071	chr8:95888449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	AP1S1->adaptor_related_protein_complex_1_sigma_1_subunit,chr7:100797678-100804877:+,INTS8->chr8:95825539-95893974:+,integrator_complex_subunit_8	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	CCDC148--PKP4	2	0	CCDC148	1339	chr2:159312927:-	PKP4	44290	chr2:159522925:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[211],CCDC148->chr2:159027593-159313265:-,coiled-coil_domain_containing_148,PKP4->chr2:159313476-159539391:+,plakophilin_4	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	CCDC150--ZNF451	2	0	CCDC150	31923	chr2:197627207:+	ZNF451	67242	chr6:57025882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	CCDC150->chr2:197504278-197628214:+,coiled-coil_domain_containing_150,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	CRBN--PDE1C	2	0	CRBN	1090	chr3:3221305:-	PDE1C	40888	chr7:31855768:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	CRBN->cereblon,chr3:3190676-3221394:-,PDE1C->chr7:31790793-32338941:-,phosphodiesterase_1C	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	GRB10--PCMTD2	2	0	GRB10	20015	chr7:50771518:-	PCMTD2	48012	chr20:62895782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,PCMTD2->chr20:62887094-62926855:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_2	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	LINS--FAM115A	2	0	LINS	2110	chr15:101142326:-	FAM115A	26126	chr7:143573715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	LINS->chr15:101099574-101143435:-,FAM115A->chr7:143548468-143599291:-	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	MAD1L1--SNX8	2	0	MAD1L1	1372	chr7:2272507:-	SNX8	54570	chr7:2304093:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	LOCAL_REARRANGEMENT:-:[18527],MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,SNX8->chr7:2291405-2393953:-,sorting_nexin_8	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	NUPL2--SPTY2D1	2	0	NUPL2	3987	chr7:23226765:+	SPTY2D1	19552	chr11:18634035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,SPTY2D1->SPT2_chromatin_protein_domain_containing_1,chr11:18627948-18656338:-	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	PRSS27--ADA	2	0	PRSS27	1437	chr16:2770116:-	ADA	13204	chr20:43264929:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PRSS27->chr16:2762419-2770552:-,protease,_serine_27,ADA->adenosine_deaminase,chr20:43248163-43280874:-	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	RANBP2--TTL	2	0	RANBP2	1198	chr2:109336134:+	TTL	46484	chr2:113286258:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RANBP2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RAN_binding_protein_2,chr2:109335937-109402267:+,TTL->Oncogene{Bushman},chr2:113239731-113299316:+,tubulin_tyrosine_ligase	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	RIN2--OLA1	2	0	RIN2	11845	chr20:19956431:+	OLA1	27624	chr2:175006728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RIN2->Ras_and_Rab_interactor_2,chr20:19867165-19983101:+,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	SCFD2--AP3B1	2	0	SCFD2	5445	chr4:54139993:-	AP3B1	42712	chr5:77335098:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	SNAP25--CSNK2A1	2	0	SNAP25	1148	chr20:10199625:+	CSNK2A1	19293	chr20:489304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SNAP25->chr20:10199478-10288066:+,synaptosome_associated_protein_25kDa,CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	YWHAE--TBCD	2	0	YWHAE	1332	chr17:1303341:-	TBCD	25437	chr17:80765484:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	ZNF680--RSBN1L	2	0	ZNF680	3637	chr7:64004684:-	RSBN1L	23372	chr7:77407655:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	CCDC150--KCNMB2	1	1	CCDC150	1225	chr2:197504502:+	KCNMB2	39798	chr3:178512930:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.011	0.011	CCDC150->chr2:197504278-197628214:+,coiled-coil_domain_containing_150,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	WM793_SKIN	0.67	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	CCDC150--KCNMB2	1	1	CCDC150	1225	chr2:197504502:+	KCNMB2	40923	chr3:178525131:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.011	0.011	CCDC150->chr2:197504278-197628214:+,coiled-coil_domain_containing_150,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	WM793_SKIN	0.67	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
A2058_SKIN	AP3D1--JSRP1	103	49	AP3D1	10657	chr19:2127151:-	JSRP1	36567	chr19:2252486:-	INCL_NON_REF_SPLICE	YES	156	1	0.49	0.99	1.0396	0.4946	LOCAL_REARRANGEMENT:-:[87787],AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1	A2058_SKIN	0.49	0.99	1.5342	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	NFIX--DNASE2	41	24	NFIX	18574	chr19:13209401:+	DNASE2	21819	chr19:12992247:-	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.4138	0.2422	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,DNASE2->chr19:12986025-12992282:-,deoxyribonuclease_II,_lysosomal	A2058_SKIN	0.93	1	0.656	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	GIPC1--DNAJB1	29	16	GIPC1	9597	chr19:14589035:-	DNAJB1	16293	chr19:14629090:-	INCL_NON_REF_SPLICE	YES	364	234	0.11	0.16	0.2927	0.1615	LOCAL_REARRANGEMENT:-:[18638],GIPC1->GIPC_PDZ_domain_containing_family_member_1,chr19:14588572-14606944:-,DNAJB1->DnaJ_heat_shock_protein_family_(Hsp40)_member_B1,chr19:14625582-14640582:-	A2058_SKIN	0.11	0.16	0.4542	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	NEK8--SUPT6H	22	0	NEK8	2188	chr17:27055878:+	SUPT6H	24093	chr17:27008274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.222	0	LOCAL_REARRANGEMENT:+:[23218],NEK8->NIMA_related_kinase_8,chr17:27052915-27070473:+,SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+	A2058_SKIN	1	1	0.222	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	AP3D1--JSRP1	7	44	AP3D1	10656	chr19:2127152:-	JSRP1	36573	chr19:2252480:-	INCL_NON_REF_SPLICE	YES	155	1	0.25	0.98	0.0707	0.4441	LOCAL_REARRANGEMENT:-:[87787],AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1	A2058_SKIN	0.25	0.98	0.5148	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	DEPDC1B--ELOVL7	14	3	DEPDC1B	4088	chr5:59982789:-	ELOVL7	24022	chr5:60083258:-	ONLY_REF_SPLICE	YES	84	3	0.17	0.85	0.1413	0.0303	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[51601],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	A2058_SKIN	0.17	0.85	0.1716	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	NEK8--SUPT6H	11	0	NEK8	1076	chr17:27052990:+	SUPT6H	24093	chr17:27008274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.111	0	LOCAL_REARRANGEMENT:+:[23218],NEK8->NIMA_related_kinase_8,chr17:27052915-27070473:+,SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+	A2058_SKIN	1	1	0.111	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	GNG7--PALM	9	1	GNG7	3333	chr19:2646222:-	PALM	18745	chr19:726138:+	ONLY_REF_SPLICE	YES	4	0	0.71	1	0.0908	0.0101	GNG7->G_protein_subunit_gamma_7,chr19:2511217-2702707:-,PALM->chr19:708953-748329:+,paralemmin	A2058_SKIN	0.71	1	0.1009	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	AC010987.6--AC010987.5	8	1	AC010987.6	1074	chr2:68052621:-	AC010987.5	6726	chr2:67911209:-	ONLY_REF_SPLICE	YES	8	0	0.53	1	0.0807	0.0101	AC010987.6->chr2:68023186-68052694:-,AC010987.5->chr2:67792736-67911209:-	A2058_SKIN	0.53	1	0.0908	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	SEMA3A--MAGI2	8	1	SEMA3A	11043	chr7:83739786:-	MAGI2	45224	chr7:77998530:-	ONLY_REF_SPLICE	YES	19	0	0.32	1	0.0807	0.0101	SEMA3A->chr7:83585093-84122040:-,semaphorin_3A,MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2	A2058_SKIN	0.32	1	0.0908	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	NFIX--DNASE2	7	4	NFIX	15716	chr19:13206543:+	DNASE2	22100	chr19:12991966:-	INCL_NON_REF_SPLICE	YES	20	186	0.35	0.06	0.0707	0.0404	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,DNASE2->chr19:12986025-12992282:-,deoxyribonuclease_II,_lysosomal	A2058_SKIN	0.06	0.35	0.1111	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	MAGI2--SEMA3A	7	2	MAGI2	20055	chr7:77824191:-	SEMA3A	52661	chr7:83689874:-	ONLY_REF_SPLICE	YES	0	17	1	0.35	0.0707	0.0202	MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2,SEMA3A->chr7:83585093-84122040:-,semaphorin_3A	A2058_SKIN	0.35	1	0.0909	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	TTYH2--GPRC5C	2	3	TTYH2	4585	chr17:72227138:+	GPRC5C	26059	chr17:72435884:+	ONLY_REF_SPLICE	YES	20	0	0.2	1	0.0202	0.0303	TTYH2->chr17:72209653-72258155:+,tweety_family_member_2,GPRC5C->G_protein-coupled_receptor_class_C_group_5_member_C,chr17:72420990-72447792:+	A2058_SKIN	0.2	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	AC009948.5--NFE2L2	2	0	AC009948.5	1175	chr2:179278840:+	NFE2L2	25901	chr2:178098999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	AC009948.5->chr2:179278666-179304970:+,NFE2L2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:178092323-178257425:-,nuclear_factor,_erythroid_2_like_2	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	ACPL2--FBXO17	2	0	ACPL2	6995	chr3:140979096:+	FBXO17	24736	chr19:39440976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	ACPL2->chr3:140947568-141013748:+,FBXO17->F-box_protein_17,chr19:39432044-39466550:-	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	CMTM7--OSBPL10	2	0	CMTM7	1395	chr3:32433557:+	OSBPL10	21067	chr3:31921322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+,OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	CPSF6--RBM48	2	0	CPSF6	11046	chr12:69656342:+	RBM48	25384	chr7:92166165:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RBM48->RNA_binding_motif_protein_48,chr7:92158087-92167319:+	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	DNAJC24--PRMT3	2	0	DNAJC24	2020	chr11:31392406:+	PRMT3	33676	chr11:20448312:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	12	0	TRUE	ACH-000788
A2058_SKIN	G3BP1--SPARC	2	0	G3BP1	1992	chr5:151151597:+	SPARC	30368	chr5:151055762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_INVERSION:+:-:[83880],G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	MACROD1--ASB1	2	0	MACROD1	3565	chr11:63918711:-	ASB1	15501	chr2:239342195:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,ASB1->ankyrin_repeat_and_SOCS_box_containing_1,chr2:239335383-239360891:+	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	MKL1--AP000470.2	2	0	MKL1	3549	chr22:40948110:-	AP000470.2	24244	chr21:25559673:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,AP000470.2->chr21:25527484-25560655:-	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	PAPOLA--RP11-371E8.4	2	0	PAPOLA	5951	chr14:96987409:+	RP11-371E8.4	38344	chr14:93678378:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,RP11-371E8.4->chr14:93651318-93684932:+	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	POLE4--MSANTD2	2	0	POLE4	2655	chr2:75187273:+	MSANTD2	11805	chr11:124644870:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,MSANTD2->Myb/SANT_DNA_binding_domain_containing_2,chr11:124636394-124670569:-	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	RBFA--CTDP1	2	0	RBFA	1296	chr18:77794653:+	CTDP1	32161	chr18:77513652:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RBFA->chr18:77794358-77806397:+,ribosome_binding_factor_A_(putative),CTDP1->CTD_phosphatase_subunit_1,chr18:77439801-77514510:+	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	SIL1--PAIP2	2	0	SIL1	5712	chr5:138533958:-	PAIP2	32374	chr5:138699448:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_INVERSION:-:+:[48030],SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	USP10--COTL1	2	0	USP10	1134	chr16:84733717:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	7	0	TRUE	ACH-000788
A2058_SKIN	USP10--COTL1	2	0	USP10	1134	chr16:84733717:+	COTL1	26655	chr16:84623868:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	5	0	TRUE	ACH-000788
A2058_SKIN	AC010987.6--AC010987.5	1	1	AC010987.6	1074	chr2:68052621:-	AC010987.5	7852	chr2:67792776:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0101	0.0101	AC010987.6->chr2:68023186-68052694:-,AC010987.5->chr2:67792736-67911209:-	A2058_SKIN	0.2	1	0.0202	TRUE	0	1	0	1	1	TRUE	ACH-000788
A2058_SKIN	AC010987.6--AC010987.5	1	1	AC010987.6	2180	chr2:68051006:-	AC010987.5	6726	chr2:67911209:-	ONLY_REF_SPLICE	YES	13	0	0.13	1	0.0101	0.0101	AC010987.6->chr2:68023186-68052694:-,AC010987.5->chr2:67792736-67911209:-	A2058_SKIN	0.13	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
C32_SKIN	PKIG--KMT2A	77	60	PKIG	5692	chr20:43218507:+	KMT2A	36033	chr11:118362459:+	ONLY_REF_SPLICE	YES	332	19	0.29	0.88	0.9015	0.7025	PKIG->Oncogene{Bushman},chr20:43160426-43252888:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_gamma,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	C32_SKIN	0.29	0.88	1.604	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	PKIG--KMT2A	5	64	PKIG	6967	chr20:43227531:+	KMT2A	36033	chr11:118362459:+	ONLY_REF_SPLICE	YES	376	19	0.16	0.78	0.0585	0.7493	PKIG->Oncogene{Bushman},chr20:43160426-43252888:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_gamma,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	C32_SKIN	0.16	0.78	0.8078	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	PKIG--KMT2A	16	13	PKIG	5692	chr20:43218507:+	KMT2A	38392	chr11:118365003:+	ONLY_REF_SPLICE	YES	332	52	0.08	0.36	0.1873	0.1522	PKIG->Oncogene{Bushman},chr20:43160426-43252888:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_gamma,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	C32_SKIN	0.08	0.36	0.3395	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	PKIG--KMT2A	3	60	PKIG	5692	chr20:43218507:+	KMT2A	36017	chr11:118362443:+	INCL_NON_REF_SPLICE	YES	332	23	0.16	0.73	0.0351	0.7025	PKIG->Oncogene{Bushman},chr20:43160426-43252888:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_gamma,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	C32_SKIN	0.16	0.73	0.7376	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	MTAP--FOCAD	13	19	MTAP	1239	chr9:21802780:+	FOCAD	23546	chr9:20658690:+	ONLY_REF_SPLICE	YES	24	0	0.57	1	0.1522	0.2224	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,FOCAD->chr9:20658308-20995954:+,focadhesin	C32_SKIN	0.57	1	0.3746	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	MTAP--FOCAD	14	13	MTAP	1239	chr9:21802780:+	FOCAD	27043	chr9:20715321:+	ONLY_REF_SPLICE	YES	24	1	0.53	0.96	0.1639	0.1522	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,FOCAD->chr9:20658308-20995954:+,focadhesin	C32_SKIN	0.53	0.96	0.3161	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	MAST3--CTB-52I2.4	13	8	MAST3	22518	chr19:18258434:+	CTB-52I2.4	30353	chr19:18141505:+	ONLY_REF_SPLICE	YES	1	15	0.95	0.58	0.1522	0.0937	LOCAL_REARRANGEMENT:+:[65694],MAST3->chr19:18208603-18262502:+,microtubule_associated_serine/threonine_kinase_3,CTB-52I2.4->chr19:18133212-18142909:+	C32_SKIN	0.58	0.95	0.2459	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	NDRG3--YAP1	14	2	NDRG3	1034	chr20:35374448:-	YAP1	25400	chr11:101984875:+	ONLY_REF_SPLICE	YES	13	113	0.55	0.12	0.1639	0.0234	NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	C32_SKIN	0.12	0.55	0.1873	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	SPATS2L--MARCH4	13	1	SPATS2L	2042	chr2:201171645:+	MARCH4	37848	chr2:217148452:-	ONLY_REF_SPLICE	YES	20	0	0.41	1	0.1522	0.0117	SPATS2L->chr2:201170604-201346986:+,spermatogenesis_associated_serine_rich_2_like,MARCH4->chr2:217122588-217236750:-,membrane_associated_ring-CH-type_finger_4	C32_SKIN	0.41	1	0.1639	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	SPATS2L--MARCH4	12	1	SPATS2L	1721	chr2:201171324:+	MARCH4	37848	chr2:217148452:-	ONLY_REF_SPLICE	YES	13	0	0.5	1	0.1405	0.0117	SPATS2L->chr2:201170604-201346986:+,spermatogenesis_associated_serine_rich_2_like,MARCH4->chr2:217122588-217236750:-,membrane_associated_ring-CH-type_finger_4	C32_SKIN	0.5	1	0.1522	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	PKIG--KMT2A	6	24	PKIG	5692	chr20:43218507:+	KMT2A	37218	chr11:118363772:+	ONLY_REF_SPLICE	YES	332	37	0.08	0.45	0.0702	0.281	PKIG->Oncogene{Bushman},chr20:43160426-43252888:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_gamma,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	C32_SKIN	0.08	0.45	0.3512	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	FAM118B--KIRREL3-AS1	9	4	FAM118B	6012	chr11:126110939:+	KIRREL3-AS1	17779	chr11:126480556:+	ONLY_REF_SPLICE	YES	45	0	0.22	1	0.1054	0.0468	FAM118B->chr11:126081309-126132881:+,family_with_sequence_similarity_118_member_B,KIRREL3-AS1->KIRREL3_antisense_RNA_1,chr11:126413842-126480843:+	C32_SKIN	0.22	1	0.1522	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	MTAP--FOCAD	1	19	MTAP	1408	chr9:21802949:+	FOCAD	23546	chr9:20658690:+	ONLY_REF_SPLICE	YES	28	0	0.42	1	0.0117	0.2224	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,FOCAD->chr9:20658308-20995954:+,focadhesin	C32_SKIN	0.42	1	0.2341	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	PSAP--GAPDH	4	0	PSAP	8533	chr10:73581668:-	GAPDH	20191	chr12:6646841:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	C32_SKIN	1	1	0.0468	TRUE	0	0	0	8	0	TRUE	ACH-000580
C32_SKIN	SAMD9L--FAM185BP	3	1	SAMD9L	4591	chr7:92774045:-	FAM185BP	20109	chr7:76713338:-	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0351	0.0117	SAMD9L->chr7:92759368-92777682:-,sterile_alpha_motif_domain_containing_9_like,FAM185BP->chr7:76713203-76751433:-,family_with_sequence_similarity_185_member_B,_pseudogene	C32_SKIN	0.36	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	PSAP--GAPDH	3	0	PSAP	8522	chr10:73581679:-	GAPDH	20179	chr12:6646829:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	C32_SKIN	1	1	0.0351	TRUE	0	0	0	8	0	TRUE	ACH-000580
C32_SKIN	ATRX--PGK1	2	0	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	C32_SKIN	1	1	0.0234	TRUE	0	1	0	9	0	TRUE	ACH-000580
C32_SKIN	EPS8--DERA	2	0	EPS8	3576	chr12:15942095:-	DERA	39639	chr12:16109870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[28843],EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase	C32_SKIN	1	1	0.0234	TRUE	0	4	0	3	0	TRUE	ACH-000580
C32_SKIN	TOP3A--SERPINE2	2	0	TOP3A	10274	chr17:18198017:-	SERPINE2	33797	chr2:224863059:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	TOP3A->chr17:18174742-18218321:-,topoisomerase_(DNA)_III_alpha,SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2	C32_SKIN	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	RP11-444D3.1--KRAS	1	1	RP11-444D3.1	4602	chr12:24521497:-	KRAS	13880	chr12:25398329:-	ONLY_REF_SPLICE	YES	4	39	0.33	0.05	0.0117	0.0117	RP11-444D3.1->chr12:24366190-24715524:-,KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-	C32_SKIN	0.05	0.33	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000580
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--PELI1	4	0	CALM3	7082	chr19:47112584:+	PELI1	21467	chr2:64320604:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0808	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TP53BP1--PSMA4	4	0	TP53BP1	3595	chr15:43785235:-	PSMA4	40594	chr15:78837211:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0808	0	TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1,PSMA4->chr15:78832747-78841604:+,proteasome_subunit_alpha_4	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC009403.2--P4HB	3	0	AC009403.2	2738	chr7:155436162:-	P4HB	15498	chr17:79803106:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0606	0	AC009403.2->chr7:155403925-155437899:-,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKNA--ST6GAL1	3	0	AKNA	3584	chr9:117143414:-	ST6GAL1	59204	chr3:186795300:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	AKNA->AT-hook_transcription_factor,chr9:117096436-117156685:-,ST6GAL1->Oncogene{Bushman},ST6_beta-galactoside_alpha-2,6-sialyltransferase_1,chr3:186648274-186796341:+	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELF1--ZNF587	3	0	ELF1	10724	chr13:41515469:-	ZNF587	27346	chr19:58376231:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,ZNF587->chr19:58361225-58376480:+,zinc_finger_protein_587	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMG20B--FAM102A	3	0	HMG20B	7234	chr19:3579008:+	FAM102A	18458	chr9:130707800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	HMG20B->chr19:3572775-3579086:+,high_mobility_group_20B,FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFN1--CSNK2A2	3	0	PFN1	4183	chr17:4849174:-	CSNK2A2	19606	chr16:58197092:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	PFN1->Oncogene{Bushman},chr17:4848947-4852356:-,profilin_1,CSNK2A2->casein_kinase_2_alpha_2,chr16:58191811-58231824:-	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHF14--ANP32B	3	0	PHF14	1437	chr7:11013935:+	ANP32B	29994	chr9:100745795:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP4R2--RPL37A	3	0	PPP4R2	2374	chr3:73047309:+	RPL37A	26302	chr2:217393993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0606	0	PPP4R2->chr3:73045936-73118350:+,protein_phosphatase_4_regulatory_subunit_2,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2A--ATP5G2	3	0	PRRC2A	13066	chr6:31601393:+	ATP5G2	23975	chr12:54066408:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PUS10--GSTP1	3	0	PUS10	1912	chr2:61244483:-	GSTP1	27805	chr11:67352177:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	PUS10->Oncogene{Bushman},chr2:61167357-61245394:-,pseudouridylate_synthase_10,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAS1--CLPTM1L	3	0	ZFAS1	2031	chr20:47895745:+	CLPTM1L	14414	chr5:1334498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0606	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABCB7--FGFR1OP	2	0	ABCB7	1628	chrX:74375940:-	FGFR1OP	27142	chr6:167435897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	ABCB7->ATP_binding_cassette_subfamily_B_member_7,chrX:74273115-74376567:-,FGFR1OP->FGFR1_oncogene_partner,Oncogene{Bushman},chr6:167412670-167466201:+	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMGCR--SRSF10	2	0	HMGCR	11477	chr5:74647140:+	SRSF10	24773	chr1:24304763:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	HMGCR->3-hydroxy-3-methylglutaryl-CoA_reductase,Oncogene{Bushman},chr5:74632154-74657929:+,SRSF10->chr1:24291294-24307417:-,serine/arginine-rich_splicing_factor_10	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NARF--TBK1	2	0	NARF	2893	chr17:80417948:+	TBK1	36319	chr12:64889263:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor,TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPLB--HIP1	2	0	PTPLB	5010	chr3:123247233:-	HIP1	21877	chr7:75228565:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	{Klijn_CCL:Lymphoid=1},PTPLB->chr3:123209667-123304032:-,HIP1->Oncogene{Bushman},chr7:75162621-75368280:-,huntingtin_interacting_protein_1	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TFRC--PAK2	2	0	TFRC	1147	chr3:195808914:-	PAK2	28987	chr3:196509497:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000534
OE33_OESOPHAGUS	SF1--MEN1	298	160	SF1	3289	chr11:64543970:-	MEN1	18872	chr11:64575571:-	ONLY_REF_SPLICE	YES	250	91	0.65	0.83	3.1431	1.6876	LOCAL_REARRANGEMENT:-:[24724],SF1->chr11:64532078-64546258:-,splicing_factor_1,MEN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:64570982-64578766:-,menin_1	OE33_OESOPHAGUS	0.65	0.83	4.8307	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	THRA--ACLY	98	6	THRA	3378	chr17:38219345:+	ACLY	32634	chr17:40058066:-	ONLY_REF_SPLICE	YES	0	124	1	0.46	1.0336	0.0633	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,ACLY->ATP_citrate_lyase,chr17:40023161-40086795:-	OE33_OESOPHAGUS	0.46	1	1.0969	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	CUX1--HBP1	75	30	CUX1	13547	chr7:101747739:+	HBP1	69232	chr7:106836279:+	ONLY_REF_SPLICE	YES	204	86	0.34	0.55	0.791	0.3164	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,HBP1->HMG-box_transcription_factor_1,Oncogene{Bushman},chr7:106809406-106842974:+	OE33_OESOPHAGUS	0.34	0.55	1.1074	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	CCAT1--CASC8	70	46	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	50	0	0.7	1	0.7383	0.4852	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	OE33_OESOPHAGUS	0.7	1	1.2235	TRUE	0	7	0	14	6	TRUE	ACH-000383
OE33_OESOPHAGUS	THRA--ACLY	32	4	THRA	3378	chr17:38219345:+	ACLY	33752	chr17:40055038:-	ONLY_REF_SPLICE	YES	0	152	1	0.19	0.3375	0.0422	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,ACLY->ATP_citrate_lyase,chr17:40023161-40086795:-	OE33_OESOPHAGUS	0.19	1	0.3797	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	ACLY--WIPF2	30	11	ACLY	10777	chr17:40060982:-	WIPF2	36093	chr17:38412643:+	ONLY_REF_SPLICE	YES	135	16	0.23	0.72	0.3164	0.116	ACLY->ATP_citrate_lyase,chr17:40023161-40086795:-,WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+	OE33_OESOPHAGUS	0.23	0.72	0.4324	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	CCAT1--CASC8	15	19	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	50	15	0.4	0.69	0.1582	0.2004	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	OE33_OESOPHAGUS	0.4	0.69	0.3586	TRUE	0	26	0	18	24	TRUE	ACH-000383
OE33_OESOPHAGUS	EEF2--PIAS4	18	0	EEF2	1092	chr19:3985376:-	PIAS4	14401	chr19:4012921:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1898	0	LOCAL_INVERSION:-:+:[22177],EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,PIAS4->chr19:4007644-4039384:+,protein_inhibitor_of_activated_STAT_4	OE33_OESOPHAGUS	1	1	0.1898	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	CCAT1--CASC8	8	33	CCAT1	1274	chr8:128231060:-	CASC8	14106	chr8:128335399:-	INCL_NON_REF_SPLICE	YES	36	0	0.53	1	0.0844	0.3481	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	OE33_OESOPHAGUS	0.53	1	0.4325	TRUE	0	7	0	14	6	TRUE	ACH-000383
OE33_OESOPHAGUS	ALDOA--HMGA1	11	0	ALDOA	7440	chr16:30077212:+	HMGA1	20953	chr6:34212956:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.116	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,HMGA1->Oncogene{Bushman},chr6:34204650-34214008:+,high_mobility_group_AT-hook_1	OE33_OESOPHAGUS	1	1	0.116	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	STAT3--ACLY	6	3	STAT3	23055	chr17:40466374:-	ACLY	34021	chr17:40063825:-	INCL_NON_REF_SPLICE	YES	37	140	0.2	0.06	0.0633	0.0316	STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3,ACLY->ATP_citrate_lyase,chr17:40023161-40086795:-	OE33_OESOPHAGUS	0.06	0.2	0.0949	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	MRC2--KRT33B	5	2	MRC2	15392	chr17:60759738:+	KRT33B	26100	chr17:39524242:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0527	0.0211	MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2,KRT33B->chr17:39519746-39526052:-,keratin_33B	OE33_OESOPHAGUS	0.88	1	0.0738	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	GLG1--RFWD3	4	2	GLG1	1458	chr16:74640555:-	RFWD3	46405	chr16:74670475:-	ONLY_REF_SPLICE	YES	34	52	0.15	0.1	0.0422	0.0211	LOCAL_REARRANGEMENT:-:[14280],GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,RFWD3->chr16:74655292-74700779:-,ring_finger_and_WD_repeat_domain_3	OE33_OESOPHAGUS	0.1	0.15	0.0633	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	RP11-255B23.4--CASC8	3	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	13502	chr8:128335399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	OE33_OESOPHAGUS	1	1	0.0316	TRUE	0	0	0	3	0	TRUE	ACH-000383
OE33_OESOPHAGUS	SLCO4A1--ADRM1	3	0	SLCO4A1	1109	chr20:61273905:+	ADRM1	21543	chr20:60881253:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_v2:{count=1;pct=0.01%;dist=Kidney_-_Cortex=1},{Klijn_CCL:Colo-Rectal=1},SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,ADRM1->adhesion_regulating_molecule_1,chr20:60877149-60883918:+	OE33_OESOPHAGUS	1	1	0.0316	TRUE	0	0	0	2	0	TRUE	ACH-000383
OE33_OESOPHAGUS	TMSB10--KRT19	3	0	TMSB10	1922	chr2:85133670:+	KRT19	5491	chr17:39684117:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,KRT19->chr17:39679869-39684560:-,keratin_19	OE33_OESOPHAGUS	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	CAPZA2--TES	2	0	CAPZA2	3371	chr7:116502704:+	TES	27852	chr7:115874588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	OE33_OESOPHAGUS	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	EEF2--ZBTB7A	2	0	EEF2	1092	chr19:3985376:-	ZBTB7A	15775	chr19:4055245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:-:[58895],EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	OE33_OESOPHAGUS	1	1	0.0211	TRUE	0	1	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	FOXO1--UBL3	2	0	FOXO1	2015	chr13:41239720:-	UBL3	14459	chr13:30351400:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3	OE33_OESOPHAGUS	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	RP11-255B23.4--CASC8	1	4	RP11-255B23.4	2391	chr8:128200030:-	CASC8	13502	chr8:128335399:-	ONLY_REF_SPLICE	YES	18	0	0.22	1	0.0105	0.0422	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	OE33_OESOPHAGUS	0.22	1	0.0527	TRUE	0	1	0	2	1	TRUE	ACH-000383
OE33_OESOPHAGUS	AP000350.4--RPS15A	1	2	AP000350.4	3772	chr22:24236613:-	RPS15A	8037	chr16:18800441:-	ONLY_REF_SPLICE	YES	0	19	1	0.14	0.0105	0.0211	AP000350.4->chr22:24236613-24241117:-,RPS15A->chr16:18792617-18801705:-,ribosomal_protein_S15a	OE33_OESOPHAGUS	0.14	1	0.0316	TRUE	0	0	0	2	0	TRUE	ACH-000383
NCIH2405_LUNG	RP11-732M18.3--GTF2H5	99	19	RP11-732M18.3	1116	chr6:158703410:+	GTF2H5	7538	chr6:158613009:+	ONLY_REF_SPLICE	YES	0	188	1	0.39	1.0271	0.1971	LOCAL_REARRANGEMENT:+:[82919],RP11-732M18.3->chr6:158703295-158733390:+,GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5	NCIH2405_LUNG	0.39	1	1.2242	TRUE	0	0	0	1	0	TRUE	ACH-000121
NCIH2405_LUNG	NCOR2--SCARB1	66	11	NCOR2	2329	chr12:125020111:-	SCARB1	76226	chr12:125272003:-	ONLY_REF_SPLICE	YES	3	202	0.96	0.28	0.6847	0.1141	YOSHIHARA_TCGA_num_samples[BRCA:1|LAML:1|LUAD:2],NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1	NCIH2405_LUNG	0.28	0.96	0.7988	TRUE	0	1	0	1	1	TRUE	ACH-000121
NCIH2405_LUNG	NCOR2--SCARB1	49	23	NCOR2	3484	chr12:125002686:-	SCARB1	76226	chr12:125272003:-	ONLY_REF_SPLICE	YES	21	202	0.77	0.26	0.5084	0.2386	YOSHIHARA_TCGA_num_samples[BRCA:1|LAML:1|LUAD:2],NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1	NCIH2405_LUNG	0.26	0.77	0.747	TRUE	0	0	0	1	0	TRUE	ACH-000121
NCIH2405_LUNG	KLHDC4--RP4-536B24.3	20	5	KLHDC4	7522	chr16:87788800:-	RP4-536B24.3	33483	chr16:87814401:-	ONLY_REF_SPLICE	YES	29	0	0.46	1	0.2075	0.0519	LOCAL_REARRANGEMENT:-:[14142],KLHDC4->chr16:87730091-87799598:-,kelch_domain_containing_4,RP4-536B24.3->chr16:87813740-87840082:-	NCIH2405_LUNG	0.46	1	0.2594	TRUE	0	0	0	1	0	TRUE	ACH-000121
NCIH2405_LUNG	NCOR2--SCARB1	14	0	NCOR2	1282	chr12:125051854:-	SCARB1	76226	chr12:125272003:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1452	0	YOSHIHARA_TCGA_num_samples[BRCA:1|LAML:1|LUAD:2],NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1	NCIH2405_LUNG	1	1	0.1452	TRUE	0	2	0	1	1	TRUE	ACH-000121
NCIH2405_LUNG	XXbac-BPG248L24.12--SPP1	10	5	XXbac-BPG248L24.12	1474	chr6:31324897:+	SPP1	5039	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	3	0	0.83	1	0.1037	0.0519	XXbac-BPG248L24.12->chr6:31324424-31325414:+,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	NCIH2405_LUNG	0.83	1	0.1556	TRUE	0	0	0	5	0	TRUE	ACH-000121
NCIH2405_LUNG	AC105760.2--AGFG1	7	2	AC105760.2	2662	chr2:237992799:-	AGFG1	22592	chr2:228416675:+	ONLY_REF_SPLICE	YES	0	61	1	0.13	0.0726	0.0207	AC105760.2->chr2:237968077-237994460:-,AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+	NCIH2405_LUNG	0.13	1	0.0933	TRUE	0	0	0	1	0	TRUE	ACH-000121
NCIH2405_LUNG	FTL--SPP1	7	0	FTL	1162	chr19:49468719:+	SPP1	10488	chr4:88902828:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0726	0	GTEx&tcga_normals:5/3694=0.14%,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	NCIH2405_LUNG	1	1	0.0726	TRUE	0	0	0	2	0	TRUE	ACH-000121
NCIH2405_LUNG	MAP2K4--LINC00670	5	2	MAP2K4	11762	chr17:12016677:+	LINC00670	22893	chr17:12453277:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0.0207	MAP2K4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:11924141-12047147:+,mitogen-activated_protein_kinase_kinase_4,LINC00670->chr17:12453099-12546171:+,long_intergenic_non-protein_coding_RNA_670	NCIH2405_LUNG	1	1	0.0726	TRUE	0	0	0	1	0	TRUE	ACH-000121
NCIH2405_LUNG	CDC25A--PPP1R2	4	3	CDC25A	9680	chr3:48215774:-	PPP1R2	24106	chr3:195251694:-	ONLY_REF_SPLICE	YES	4	114	0.64	0.06	0.0415	0.0311	CDC25A->Oncogene{Bushman},cell_division_cycle_25A,chr3:48198636-48229892:-,PPP1R2->chr3:195241221-195270209:-,protein_phosphatase_1_regulatory_inhibitor_subunit_2	NCIH2405_LUNG	0.06	0.64	0.0726	TRUE	0	0	0	1	0	TRUE	ACH-000121
NCIH2405_LUNG	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH2405_LUNG	1	1	0.0207	TRUE	0	0	0	12	0	TRUE	ACH-000121
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	23	6	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	98	0	0.23	1	0.2143	0.0559	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.2702	TRUE	1	0	0	4	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	6	6	RP11-353N4.6	2221	chr1:149576702:+	RP11-403I13.7	14803	chr1:149284650:+	INCL_NON_REF_SPLICE	YES	110	0	0.1	1	0.0559	0.0559	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.1118	TRUE	1	0	0	4	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSPAN9--TULP3	7	1	TSPAN9	10066	chr12:3389649:+	TULP3	22362	chr12:3029929:+	ONLY_REF_SPLICE	YES	6	23	0.57	0.26	0.0652	0.0093	TSPAN9->chr12:3186521-3395730:+,tetraspanin_9,TULP3->chr12:2986389-3050306:+,tubby_like_protein_3	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.57	0.0745	TRUE	0	0	0	1	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	7	0	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0652	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0652	TRUE	0	2	0	11	2	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPRY1--RP11-93L9.1	7	0	SPRY1	2719	chr4:124319668:+	RP11-93L9.1	11872	chr4:124573942:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0652	0	SPRY1->chr4:124317950-124324910:+,sprouty_RTK_signaling_antagonist_1,RP11-93L9.1->chr4:124571422-124851561:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	6	2	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	21	0	0.28	1	0.0559	0.0186	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.0745	TRUE	0	3	0	7	3	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	5	4	CCDC26	4649	chr8:130411777:-	LINC00977	12110	chr8:130235615:-	INCL_NON_REF_SPLICE	YES	35	0	0.2	1	0.0466	0.0373	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.0839	TRUE	0	0	0	4	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	5	1	CCDC26	4649	chr8:130411777:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	35	2	0.15	0.75	0.0466	0.0093	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.75	0.0559	TRUE	0	0	0	4	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKAA1--C7	4	2	PRKAA1	1312	chr5:40798165:-	C7	19649	chr5:40928682:+	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0373	0.0186	PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1,C7->chr5:40909354-40983041:+,complement_component_7	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	3	3	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	16052	chr1:149286755:+	ONLY_REF_SPLICE	YES	98	4	0.06	0.6	0.028	0.028	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.6	0.056	TRUE	0	0	0	3	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD74--RPLP1	3	0	CD74	7245	chr5:149781775:-	RPLP1	10962	chr15:69745264:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	GTEx&tcga_normals:3/3694=0.08%,CD74->CD74_molecule,Oncogene{Bushman},chr5:149781200-149792492:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--SON	2	0	CHD2	6529	chr15:93444529:+	SON	72219	chr21:34931536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SON->SON_DNA_binding_protein,chr21:34914924-34949812:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	2	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-436K13.2--EBF1	2	0	CTC-436K13.2	1190	chr5:157702908:+	EBF1	13411	chr5:158267118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	CTC-436K13.2->chr5:157702719-157705821:+,EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CXCR4--FKBP8	2	0	CXCR4	1120	chr2:136875616:-	FKBP8	9615	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	CXCR4->C-X-C_motif_chemokine_receptor_4,chr2:136871919-136875735:-,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001432.14--TTC3	1	2	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	10	52	0.23	0.05	0.0093	0.0186	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.23	0.0279	TRUE	0	0	0	15	0	TRUE	ACH-000492
SNU466_CENTRAL_NERVOUS_SYSTEM	COL5A1--VIM	55	2	COL5A1	64850	chr9:137734346:+	VIM	71264	chr10:17271331:+	INCL_NON_REF_SPLICE	NO	1007	21	0.05	0.73	0.6145	0.0223	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,VIM->chr10:17270258-17279592:+,vimentin	SNU466_CENTRAL_NERVOUS_SYSTEM	0.05	0.73	0.6368	TRUE	0	0	0	1	0	TRUE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	PEPD--LLNLF-65H9.1	45	13	PEPD	12550	chr19:33953901:-	LLNLF-65H9.1	29716	chr19:28474319:+	ONLY_REF_SPLICE	YES	64	0	0.48	1	0.5028	0.1452	PEPD->chr19:33877856-34012700:-,peptidase_D,LLNLF-65H9.1->chr19:28284396-28475892:+	SNU466_CENTRAL_NERVOUS_SYSTEM	0.48	1	0.648	TRUE	0	0	0	1	0	TRUE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	PDIA4--GAPDH	7	0	PDIA4	6407	chr7:148709365:-	GAPDH	18610	chr12:6646518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0782	0	PDIA4->chr7:148700154-148725733:-,protein_disulfide_isomerase_family_A_member_4,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0782	TRUE	0	0	0	2	0	TRUE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	VIM--PPIA	4	0	VIM	2122	chr10:17271379:+	PPIA	12215	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	VIM->chr10:17270258-17279592:+,vimentin,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0447	TRUE	0	0	0	6	0	TRUE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	VIM-AS1--FSCN1	4	0	VIM-AS1	1555	chr10:17271430:-	FSCN1	9803	chr7:5632447:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0447	TRUE	0	0	0	3	0	TRUE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	DTD1--DSTN	2	0	DTD1	4657	chr20:18608877:+	DSTN	15667	chr20:17581383:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	DTD1->D-tyrosyl-tRNA_deacylase_1,chr20:18568537-18744561:+,DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000289
EFM192A_BREAST	MED13--EYA2	217	58	MED13	9824	chr17:60106902:-	EYA2	44114	chr20:45618640:+	ONLY_REF_SPLICE	YES	58	1	0.83	1	1.8123	0.4844	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	EFM192A_BREAST	0.83	1	2.2967	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	TBK1--RP11-435B5.7	145	52	TBK1	14940	chr12:64883899:+	RP11-435B5.7	24596	chr1:143529235:-	ONLY_REF_SPLICE	YES	69	0	0.74	1	1.211	0.4343	TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,RP11-435B5.7->chr1:143527555-143533272:-	EFM192A_BREAST	0.74	1	1.6453	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	PREX1--ARFGEF2	104	31	PREX1	38736	chr20:47244399:-	ARFGEF2	68758	chr20:47621607:+	ONLY_REF_SPLICE	YES	296	78	0.31	0.63	0.8686	0.2589	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[94007],PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	EFM192A_BREAST	0.31	0.63	1.1275	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	PREX1--HILS1	87	20	PREX1	3437	chr20:47361562:-	HILS1	46494	chr17:48249538:-	ONLY_REF_SPLICE	YES	233	2	0.31	0.98	0.7266	0.167	PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,HILS1->chr17:48248789-48258539:-,histone_linker_H1_domain,_spermatid-specific_1_(pseudogene)	EFM192A_BREAST	0.31	0.98	0.8936	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	HOXB6--CISD3	69	41	HOXB6	3803	chr17:46675098:-	CISD3	10788	chr17:36887013:+	ONLY_REF_SPLICE	YES	1	316	0.99	0.26	0.5763	0.3424	HOXB6->chr17:46671639-46682354:-,homeobox_B6,CISD3->CDGSH_iron_sulfur_domain_3,chr17:36886488-36891297:+	EFM192A_BREAST	0.26	0.99	0.9187	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	DEPDC1B--HSD17B12	74	14	DEPDC1B	1145	chr5:59995873:-	HSD17B12	40936	chr11:43852526:+	ONLY_REF_SPLICE	YES	2	93	0.98	0.49	0.618	0.1169	{Klijn_CCL:Breast=1},DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	EFM192A_BREAST	0.49	0.98	0.7349	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	TMEM135--GRM5-AS1	60	13	TMEM135	11402	chr11:87006865:+	GRM5-AS1	31079	chr11:88244919:+	ONLY_REF_SPLICE	YES	40	0	0.65	1	0.5011	0.1086	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,GRM5-AS1->GRM5_antisense_RNA_1,chr11:88237744-88257222:+	EFM192A_BREAST	0.65	1	0.6097	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	TBK1--RP11-435B5.7	42	39	TBK1	14940	chr12:64883899:+	RP11-435B5.7	25634	chr1:143528126:-	ONLY_REF_SPLICE	YES	69	0	0.54	1	0.3508	0.3257	TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,RP11-435B5.7->chr1:143527555-143533272:-	EFM192A_BREAST	0.54	1	0.6765	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	DEPDC1B--HSD17B12	42	9	DEPDC1B	1145	chr5:59995873:-	HSD17B12	43390	chr11:43859867:+	ONLY_REF_SPLICE	YES	2	76	0.96	0.4	0.3508	0.0752	{Klijn_CCL:Breast=1},DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	EFM192A_BREAST	0.4	0.96	0.426	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	WIPF2--SGCA	26	4	WIPF2	1189	chr17:38375744:+	SGCA	22724	chr17:48245308:+	ONLY_REF_SPLICE	YES	39	0	0.43	1	0.2171	0.0334	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,SGCA->chr17:48241575-48253292:+,sarcoglycan_alpha	EFM192A_BREAST	0.43	1	0.2505	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MATN2--TMEM74	23	8	MATN2	10767	chr8:98991236:+	TMEM74	34824	chr8:109621055:-	ONLY_REF_SPLICE	YES	16	0	0.66	1	0.1921	0.0668	MATN2->chr8:98881068-99048944:+,matrilin_2,TMEM74->Oncogene{Bushman},chr8:109619079-109799844:-,transmembrane_protein_74	EFM192A_BREAST	0.66	1	0.2589	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	TESK2--PDZK1IP1	21	14	TESK2	3779	chr1:45887397:-	PDZK1IP1	18625	chr1:47653099:-	ONLY_REF_SPLICE	YES	0	49	1	0.42	0.1754	0.1169	{Klijn_CCL:Breast=1},TESK2->chr1:45809555-45956872:-,testis-specific_kinase_2,PDZK1IP1->PDZK1_interacting_protein_1,chr1:47649265-47656716:-	EFM192A_BREAST	0.42	1	0.2923	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	TESK2--PDZK1IP1	21	7	TESK2	3779	chr1:45887397:-	PDZK1IP1	19981	chr1:47650769:-	ONLY_REF_SPLICE	YES	0	30	1	0.48	0.1754	0.0585	{Klijn_CCL:Breast=1},TESK2->chr1:45809555-45956872:-,testis-specific_kinase_2,PDZK1IP1->PDZK1_interacting_protein_1,chr1:47649265-47656716:-	EFM192A_BREAST	0.48	1	0.2339	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	ARFGEF2--KRT222	19	5	ARFGEF2	25184	chr20:47621758:+	KRT222	45697	chr17:38818296:-	ONLY_REF_SPLICE	YES	72	2	0.25	0.92	0.1587	0.0418	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,KRT222->chr17:38785049-38821393:-,chr17:38810917-38821433:-,keratin_222	EFM192A_BREAST	0.25	0.92	0.2005	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	INTS4--NUP160	20	1	INTS4	25113	chr11:77612467:-	NUP160	38822	chr11:47857361:-	ONLY_REF_SPLICE	YES	16	38	0.57	0.36	0.167	0.0084	INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	EFM192A_BREAST	0.36	0.57	0.1754	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	HOXB6--CISD3	4	42	HOXB6	3803	chr17:46675098:-	CISD3	10753	chr17:36886978:+	INCL_NON_REF_SPLICE	YES	1	342	0.98	0.12	0.0334	0.3508	HOXB6->chr17:46671639-46682354:-,homeobox_B6,CISD3->CDGSH_iron_sulfur_domain_3,chr17:36886488-36891297:+	EFM192A_BREAST	0.12	0.98	0.3842	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	STK17A--CTD-2560E9.3	13	2	STK17A	4050	chr7:43647999:+	CTD-2560E9.3	14854	chr11:45237754:-	ONLY_REF_SPLICE	YES	39	0	0.28	1	0.1086	0.0167	STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a,CTD-2560E9.3->chr11:45237366-45256843:-	EFM192A_BREAST	0.28	1	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MOB3B--TEK	9	4	MOB3B	2843	chr9:27455131:-	TEK	20037	chr9:27172614:+	ONLY_REF_SPLICE	YES	9	0	0.59	1	0.0752	0.0334	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[95034],MOB3B->MOB_kinase_activator_3B,chr9:27325207-27529779:-,TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+	EFM192A_BREAST	0.59	1	0.1086	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	SNRPD1--CABLES1	8	0	SNRPD1	1177	chr18:19192404:+	CABLES1	14227	chr18:20768802:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0668	0	SNRPD1->chr18:19192228-19210417:+,small_nuclear_ribonucleoprotein_D1_polypeptide,CABLES1->Cdk5_and_Abl_enzyme_substrate_1,chr18:20714528-20840431:+	EFM192A_BREAST	1	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	ARFGEF2--APCDD1L-AS1	7	2	ARFGEF2	30051	chr20:47632952:+	APCDD1L-AS1	55025	chr20:57193796:+	ONLY_REF_SPLICE	YES	94	0	0.09	1	0.0585	0.0167	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	EFM192A_BREAST	0.09	1	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	TESK2--PDZK1IP1	2	14	TESK2	3779	chr1:45887397:-	PDZK1IP1	17478	chr1:47655684:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.0167	0.1169	{Klijn_CCL:Breast=1},TESK2->chr1:45809555-45956872:-,testis-specific_kinase_2,PDZK1IP1->PDZK1_interacting_protein_1,chr1:47649265-47656716:-	EFM192A_BREAST	0.94	1	0.1336	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	HELZ2--XPOT	4	5	HELZ2	16015	chr20:62190578:-	XPOT	42684	chr12:64841885:+	INCL_NON_REF_SPLICE	YES	2	168	0.82	0.05	0.0334	0.0418	HELZ2->chr20:62189439-62205592:-,helicase_with_zinc_finger_2,XPOT->chr12:64798130-64844907:+,exportin_for_tRNA	EFM192A_BREAST	0.05	0.82	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	SLC44A2--RPL19	5	0	SLC44A2	9133	chr19:10747032:+	RPL19	20041	chr17:37359260:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2,RPL19->chr17:37356536-37360980:+,ribosomal_protein_L19	EFM192A_BREAST	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	HELZ2--XPOT	4	3	HELZ2	15958	chr20:62190635:-	XPOT	42684	chr12:64841885:+	INCL_NON_REF_SPLICE	YES	4	168	0.64	0.04	0.0334	0.0251	HELZ2->chr20:62189439-62205592:-,helicase_with_zinc_finger_2,XPOT->chr12:64798130-64844907:+,exportin_for_tRNA	EFM192A_BREAST	0.04	0.64	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	DCP2--CAMK4	4	0	DCP2	12013	chr5:112349089:+	CAMK4	24584	chr5:110679722:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	DCP2->chr5:112312399-112356667:+,decapping_mRNA_2,CAMK4->calcium/calmodulin-dependent_protein_kinase_IV,chr5:110559351-110830584:+	EFM192A_BREAST	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	DEPDC1B--HSD17B12	4	0	DEPDC1B	1145	chr5:59995873:-	HSD17B12	48206	chr11:43876265:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	{Klijn_CCL:Breast=1},DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	EFM192A_BREAST	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	HOXB6--CISD3	4	0	HOXB6	1513	chr17:46681842:-	CISD3	10788	chr17:36887013:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	HOXB6->chr17:46671639-46682354:-,homeobox_B6,CISD3->CDGSH_iron_sulfur_domain_3,chr17:36886488-36891297:+	EFM192A_BREAST	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	TMEM135--GRM5-AS1	2	8	TMEM135	9064	chr11:86947726:+	GRM5-AS1	31079	chr11:88244919:+	ONLY_REF_SPLICE	YES	27	0	0.27	1	0.0167	0.0668	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,GRM5-AS1->GRM5_antisense_RNA_1,chr11:88237744-88257222:+	EFM192A_BREAST	0.27	1	0.0835	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	PRDM11--COA1	3	0	PRDM11	7683	chr11:45226329:+	COA1	40603	chr7:43649240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	PRDM11->PR_domain_11,chr11:45115564-45247734:+,COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog	EFM192A_BREAST	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	WIPF2--SGCA	2	4	WIPF2	1189	chr17:38375744:+	SGCA	22359	chr17:48244943:+	ONLY_REF_SPLICE	YES	39	6	0.13	0.5	0.0167	0.0334	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,SGCA->chr17:48241575-48253292:+,sarcoglycan_alpha	EFM192A_BREAST	0.13	0.5	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MED13--EYA2	1	7	MED13	9514	chr17:60107212:-	EYA2	44114	chr20:45618640:+	ONLY_REF_SPLICE	YES	70	1	0.1	0.89	0.0084	0.0585	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	EFM192A_BREAST	0.1	0.89	0.0669	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	METTL25--TMTC2	2	1	METTL25	1420	chr12:82752695:+	TMTC2	38540	chr12:83444683:+	ONLY_REF_SPLICE	YES	4	9	0.43	0.25	0.0167	0.0084	METTL25->chr12:82752276-82873015:+,methyltransferase_like_25,TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2	EFM192A_BREAST	0.25	0.43	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	METTL25--TMTC2	2	1	METTL25	1420	chr12:82752695:+	TMTC2	37458	chr12:83424577:+	ONLY_REF_SPLICE	YES	4	10	0.43	0.23	0.0167	0.0084	METTL25->chr12:82752276-82873015:+,methyltransferase_like_25,TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2	EFM192A_BREAST	0.23	0.43	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	GPC5--DYM	2	0	GPC5	10063	chr13:92797242:+	DYM	35751	chr18:46812983:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	EFM192A_BREAST	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	PCGF2--HOXB-AS3	2	0	PCGF2	8271	chr17:36892343:-	HOXB-AS3	21717	chr17:46681289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,HOXB-AS3->HOXB_cluster_antisense_RNA_3,chr17:46626992-46683776:+	EFM192A_BREAST	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	TOP2A--SCN4A	2	0	TOP2A	22013	chr17:38545768:-	SCN4A	44514	chr17:62021206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	TOP2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38544768-38574202:-,topoisomerase_(DNA)_II_alpha,SCN4A->chr17:62015914-62050278:-,sodium_voltage-gated_channel_alpha_subunit_4	EFM192A_BREAST	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	WIPF2--SGCA	1	4	WIPF2	1189	chr17:38375744:+	SGCA	22145	chr17:48244729:+	ONLY_REF_SPLICE	YES	39	0	0.11	1	0.0084	0.0334	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,SGCA->chr17:48241575-48253292:+,sarcoglycan_alpha	EFM192A_BREAST	0.11	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	WIPF2--SGCA	1	4	WIPF2	1214	chr17:38375769:+	SGCA	22724	chr17:48245308:+	ONLY_REF_SPLICE	YES	65	0	0.07	1	0.0084	0.0334	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,SGCA->chr17:48241575-48253292:+,sarcoglycan_alpha	EFM192A_BREAST	0.07	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	ZNF704--PVT1	2	0	ZNF704	3480	chr8:81733609:-	PVT1	53188	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	EFM192A_BREAST	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	ZNF8--CASK	2	0	ZNF8	1197	chr19:58790513:+	CASK	10012	chrX:41712480:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	ZNF8->chr19:58790317-58807254:+,chr19:58790318-58807254:+,zinc_finger_protein_8,CASK->calcium/calmodulin-dependent_serine_protein_kinase_(MAGUK_family),chrX:41374187-41782716:-	EFM192A_BREAST	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	TMEM135--RP11-736K20.6	1	1	TMEM135	11402	chr11:87006865:+	RP11-736K20.6	28399	chr11:86710918:+	ONLY_REF_SPLICE	YES	40	0	0.05	1	0.0084	0.0084	LOCAL_REARRANGEMENT:+:[36885],TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,RP11-736K20.6->chr11:86666661-86712001:+	EFM192A_BREAST	0.05	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000117
NCIH1373_LUNG	TGFBR2--RBMS3	191	26	TGFBR2	1476	chr3:30648469:+	RBMS3	34802	chr3:30029634:+	ONLY_REF_SPLICE	YES	12	4	0.95	0.98	2.2888	0.3116	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+	NCIH1373_LUNG	0.95	0.98	2.6004	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	FAM133B--CDK6	82	50	FAM133B	3935	chr7:92210820:-	CDK6	24636	chr7:92252400:-	ONLY_REF_SPLICE	YES	67	46	0.66	0.74	0.9826	0.5992	{Klijn_CCL:Lymphoid=2,Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[14527],FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B,CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6	NCIH1373_LUNG	0.66	0.74	1.5818	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	RGS17--VWA8	39	23	RGS17	1126	chr6:153452259:-	VWA8	56280	chr13:42189220:-	ONLY_REF_SPLICE	YES	4	6	0.94	0.91	0.4673	0.2756	RGS17->chr6:153325594-153452384:-,regulator_of_G-protein_signaling_17,VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8	NCIH1373_LUNG	0.91	0.94	0.7429	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	ELOF1--LRFN2	9	0	ELOF1	4387	chr19:11664418:-	LRFN2	9897	chr6:40555151:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	ELOF1->chr19:11661962-11670051:-,elongation_factor_1_homolog,LRFN2->chr6:40359325-40555204:-,leucine_rich_repeat_and_fibronectin_type_III_domain_containing_2	NCIH1373_LUNG	1	1	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	PARD3--TMTC1	6	11	PARD3	28968	chr10:34558585:-	TMTC1	40171	chr12:29921008:-	ONLY_REF_SPLICE	YES	23	0	0.42	1	0.0719	0.1318	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,TMTC1->chr12:29653773-29937692:-,transmembrane_and_tetratricopeptide_repeat_containing_1	NCIH1373_LUNG	0.42	1	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	FAM133B--CDK6	5	9	FAM133B	1127	chr7:92219582:-	CDK6	24636	chr7:92252400:-	ONLY_REF_SPLICE	YES	32	46	0.3	0.23	0.0599	0.1078	{Klijn_CCL:Lymphoid=2,Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[14527],FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B,CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6	NCIH1373_LUNG	0.23	0.3	0.1677	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	FAM133B--CDK6	1	20	FAM133B	3935	chr7:92210820:-	CDK6	25757	chr7:92247521:-	ONLY_REF_SPLICE	YES	67	35	0.24	0.38	0.012	0.2397	{Klijn_CCL:Lymphoid=2,Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[14527],FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B,CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6	NCIH1373_LUNG	0.24	0.38	0.2517	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	FAM133B--CDK6	1	9	FAM133B	1127	chr7:92219582:-	CDK6	23335	chr7:92300849:-	ONLY_REF_SPLICE	YES	32	38	0.24	0.21	0.012	0.1078	{Klijn_CCL:Lymphoid=2,Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[14527],FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B,CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6	NCIH1373_LUNG	0.21	0.24	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	ZNF618--AKAP2	3	0	ZNF618	10076	chr9:116779064:+	AKAP2	32371	chr9:112686015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618,AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+	NCIH1373_LUNG	1	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	LGALS1--FNBP1	2	0	LGALS1	2458	chr22:38073072:+	FNBP1	14755	chr9:132691974:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1,FNBP1->Oncogene{Bushman},chr9:132649466-132805473:-,formin_binding_protein_1	NCIH1373_LUNG	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	MET--CAV1	2	0	MET	4452	chr7:116340338:+	CAV1	33564	chr7:116199000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	NCIH1373_LUNG	1	1	0.024	TRUE	0	1	0	3	1	TRUE	ACH-000845
NCIH1373_LUNG	OIP5--RPS6KB1	2	0	OIP5	2830	chr15:41611856:-	RPS6KB1	22991	chr17:58018197:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	OIP5->Opa_interacting_protein_5,chr15:41601466-41624819:-,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	NCIH1373_LUNG	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	PRDM8--ANTXR2	2	0	PRDM8	1177	chr4:81105209:+	ANTXR2	40137	chr4:80828621:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	LOCAL_INVERSION:+:-:[58425],PRDM8->PR_domain_8,chr4:81105033-81125483:+,ANTXR2->anthrax_toxin_receptor_2,chr4:80822303-81046608:-	NCIH1373_LUNG	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000845
MELHO_SKIN	ARL6IP1--PKD1P5	52	449	ARL6IP1	3312	chr16:18809325:-	PKD1P5	33995	chr16:18462169:-	INCL_NON_REF_SPLICE	YES	806	28	0.38	0.95	0.7535	6.5058	ARL6IP1->ADP_ribosylation_factor_like_GTPase_6_interacting_protein_1,chr16:18802991-18813000:-,PKD1P5->chr16:18458147-18495797:-,polycystin_1,_transient_receptor_potential_channel_interacting_pseudogene_5	MELHO_SKIN	0.38	0.95	7.2593	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	SLC22A18AS--USP47	34	12	SLC22A18AS	3552	chr11:2920626:-	USP47	20549	chr11:11941703:+	ONLY_REF_SPLICE	YES	45	37	0.51	0.55	0.4926	0.1739	SLC22A18AS->chr11:2909010-2924970:-,solute_carrier_family_22_member_18_antisense,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	MELHO_SKIN	0.51	0.55	0.6665	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	DEXI--PPP6R3	17	14	DEXI	4396	chr16:11023074:-	PPP6R3	23099	chr11:68334482:+	ONLY_REF_SPLICE	YES	43	143	0.42	0.18	0.2463	0.2029	DEXI->Dexi_homolog,chr16:11022748-11036317:-,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3	MELHO_SKIN	0.18	0.42	0.4492	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	CHD1L--HYDIN	16	6	CHD1L	20555	chr1:146759412:+	HYDIN	55970	chr16:71065820:-	ONLY_REF_SPLICE	YES	89	0	0.2	1	0.2318	0.0869	CHD1L->chr1:146714291-146767443:+,chromodomain_helicase_DNA_binding_protein_1-like,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	MELHO_SKIN	0.2	1	0.3187	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	CHKA--KIAA1549L	13	5	CHKA	12624	chr11:67831992:-	KIAA1549L	30356	chr11:33596248:+	ONLY_REF_SPLICE	YES	134	32	0.12	0.36	0.1884	0.0724	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,KIAA1549L->KIAA1549-like,chr11:33563618-33695648:+	MELHO_SKIN	0.12	0.36	0.2608	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	SBF2--RBBP6	11	2	SBF2	2279	chr11:10215449:-	RBBP6	71755	chr16:24567629:+	ONLY_REF_SPLICE	YES	4	18	0.76	0.42	0.1594	0.029	{Klijn_CCL:Skin=1},SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,RBBP6->Oncogene{Bushman},chr16:24549014-24584184:+,retinoblastoma_binding_protein_6	MELHO_SKIN	0.42	0.76	0.1884	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	STIM1--C16orf62	10	3	STIM1	2883	chr11:3877639:+	C16orf62	34233	chr16:19576173:+	ONLY_REF_SPLICE	YES	21	2	0.38	0.87	0.1449	0.0435	STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1,C16orf62->chr16:19566562-19718115:+,chromosome_16_open_reading_frame_62	MELHO_SKIN	0.38	0.87	0.1884	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	SLC22A18AS--USP47	7	2	SLC22A18AS	2157	chr11:2923814:-	USP47	20549	chr11:11941703:+	ONLY_REF_SPLICE	YES	10	37	0.47	0.2	0.1014	0.029	SLC22A18AS->chr11:2909010-2924970:-,solute_carrier_family_22_member_18_antisense,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	MELHO_SKIN	0.2	0.47	0.1304	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	PCSK5--GCAT	6	1	PCSK5	2835	chr9:78547399:+	GCAT	55999	chr22:38208894:+	ONLY_REF_SPLICE	YES	0	91	1	0.07	0.0869	0.0145	PCSK5->chr9:78505560-78977255:+,proprotein_convertase_subtilisin/kexin_type_5,GCAT->chr22:38203912-38213183:+,glycine_C-acetyltransferase	MELHO_SKIN	0.07	1	0.1014	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	XYLT1--TRIM22	3	1	XYLT1	4675	chr16:17451869:-	TRIM22	40863	chr11:5755412:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0435	0.0145	XYLT1->chr16:17195626-17564738:-,xylosyltransferase_1,TRIM22->chr11:5710919-5758319:+,tripartite_motif_containing_22	MELHO_SKIN	0.8	1	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	NHP2L1--CRELD2	3	0	NHP2L1	2186	chr22:42084798:-	CRELD2	19113	chr22:50319065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0435	0	NHP2L1->chr22:42069934-42086508:-,CRELD2->chr22:50311815-50321188:+,cysteine_rich_with_EGF_like_domains_2	MELHO_SKIN	1	1	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	ATP6V1A--NAA50	2	0	ATP6V1A	1095	chr3:113465960:+	NAA50	25711	chr3:113442942:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	LOCAL_INVERSION:+:-:[719],ATP6V1A->ATPase_H+_transporting_V1_subunit_A,chr3:113465866-113530903:+,NAA50->N(alpha)-acetyltransferase_50,_NatE_catalytic_subunit,chr3:113435307-113465147:-	MELHO_SKIN	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	ELP4--DCDC1	1	3	ELP4	10185	chr11:31671769:+	DCDC1	30980	chr11:31159331:-	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0145	0.0435	ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4,DCDC1->chr11:30851916-31391357:-,doublecortin_domain_containing_1	MELHO_SKIN	0.2	1	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	CRAMP1L--E4F1	1	2	CRAMP1L	7980	chr16:1691188:+	E4F1	30892	chr16:2278373:+	ONLY_REF_SPLICE	YES	6	31	0.33	0.09	0.0145	0.029	CRAMP1L->chr16:1662326-1727909:+,E4F1->E4F_transcription_factor_1,chr16:2273567-2285743:+	MELHO_SKIN	0.09	0.33	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000450
HCC1588_LUNG	IQGAP1--FAM174B	76	12	IQGAP1	2279	chr15:90934105:+	FAM174B	56743	chr15:93173575:-	ONLY_REF_SPLICE	YES	112	4	0.44	0.96	0.7499	0.1184	IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,FAM174B->chr15:93160673-93353114:-,family_with_sequence_similarity_174_member_B	HCC1588_LUNG	0.44	0.96	0.8683	TRUE	0	0	0	2	0	TRUE	ACH-001078
HCC1588_LUNG	LUZP1--TMCO4	27	4	LUZP1	2577	chr1:23495259:-	TMCO4	38383	chr1:20009937:-	ONLY_REF_SPLICE	YES	0	31	1	0.5	0.2664	0.0395	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,TMCO4->chr1:20008706-20126438:-,transmembrane_and_coiled-coil_domains_4	HCC1588_LUNG	0.5	1	0.3059	TRUE	0	0	0	2	0	TRUE	ACH-001078
HCC1588_LUNG	LRBA--SH3D19	12	3	LRBA	38254	chr4:151682935:-	SH3D19	88953	chr4:152070713:-	ONLY_REF_SPLICE	YES	42	145	0.26	0.09	0.1184	0.0296	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},YOSHIHARA_TCGA_num_samples[BLCA:1|HNSC:1|LUSC:1],{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[87024],LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,SH3D19->SH3_domain_containing_19,chr4:152023903-152246784:-	HCC1588_LUNG	0.09	0.26	0.148	TRUE	0	4	0	2	4	TRUE	ACH-001078
HCC1588_LUNG	URGCP--TLK1	2	0	URGCP	3924	chr7:43946161:-	TLK1	24213	chr2:171974367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	URGCP->chr7:43915493-43966010:-,upregulator_of_cell_proliferation,TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1	HCC1588_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-001078
HCC1588_LUNG	WDFY2--FOXO1	2	0	WDFY2	3459	chr13:52249379:+	FOXO1	22874	chr13:41134997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	WDFY2->WD_repeat_and_FYVE_domain_containing_2,chr13:52158644-52336171:+,FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1	HCC1588_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-001078
CAKI2_KIDNEY	UBTD2--NSG2	127	37	UBTD2	1476	chr5:171710600:-	NSG2	21173	chr5:173669685:+	ONLY_REF_SPLICE	YES	42	0	0.8	1	1.2005	0.3498	UBTD2->chr5:171636644-171711075:-,ubiquitin_domain_containing_2,NSG2->chr5:173472607-173670504:+	CAKI2_KIDNEY	0.8	1	1.5503	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	CAPZA2--MET	95	13	CAPZA2	3371	chr7:116502704:+	MET	46708	chr7:116422042:+	ONLY_REF_SPLICE	YES	71	442	0.6	0.2	0.898	0.1229	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	CAKI2_KIDNEY	0.2	0.6	1.0209	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	PCMT1--PDSS2	59	40	PCMT1	1514	chr6:150071092:+	PDSS2	25591	chr6:107515058:-	ONLY_REF_SPLICE	YES	219	35	0.31	0.74	0.5577	0.3781	PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase,PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2	CAKI2_KIDNEY	0.31	0.74	0.9358	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	VCAN--XRCC4	54	17	VCAN	23911	chr5:82850857:+	XRCC4	41394	chr5:82648944:+	ONLY_REF_SPLICE	YES	274	20	0.21	0.78	0.5104	0.1607	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Artery_-_Coronary=1},VCAN->Oncogene{Bushman},chr5:82767284-82878122:+,versican,XRCC4->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_4,chr5:82373317-82649606:+	CAKI2_KIDNEY	0.21	0.78	0.6711	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	DST--SDCBP	50	18	DST	6509	chr6:56707853:-	SDCBP	133242	chr8:59477578:+	ONLY_REF_SPLICE	YES	25	17	0.73	0.8	0.4726	0.1701	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein	CAKI2_KIDNEY	0.73	0.8	0.6427	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	PCMT1--PDSS2	31	75	PCMT1	1514	chr6:150071092:+	PDSS2	22227	chr6:107533486:-	ONLY_REF_SPLICE	YES	219	12	0.33	0.9	0.293	0.709	PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase,PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2	CAKI2_KIDNEY	0.33	0.9	1.002	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	CAPZA2--MET	45	7	CAPZA2	3371	chr7:116502704:+	MET	48984	chr7:116435709:+	ONLY_REF_SPLICE	YES	71	581	0.42	0.08	0.4254	0.0662	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	CAKI2_KIDNEY	0.08	0.42	0.4916	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	ARHGAP26--RNF130	37	13	ARHGAP26	20298	chr5:142393681:+	RNF130	58821	chr5:179390564:-	ONLY_REF_SPLICE	YES	17	68	0.75	0.42	0.3498	0.1229	{Klijn_CCL:Kidney=1},ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,RNF130->chr5:179338651-179499118:-,ring_finger_protein_130	CAKI2_KIDNEY	0.42	0.75	0.4727	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	GLYR1--SMIM22	33	5	GLYR1	15773	chr16:4861171:-	SMIM22	24375	chr16:4844953:+	ONLY_REF_SPLICE	YES	89	0	0.3	1	0.3119	0.0473	LOCAL_INVERSION:-:+:[6712],GLYR1->chr16:4853204-4897343:-,glyoxylate_reductase_1_homolog,SMIM22->chr16:4838398-4846492:+,small_integral_membrane_protein_22	CAKI2_KIDNEY	0.3	1	0.3592	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	DOCK7--IGKV1OR10-1	31	8	DOCK7	13492	chr1:63084377:-	IGKV1OR10-1	57581	chr10:42680942:+	ONLY_REF_SPLICE	YES	10	0	0.8	1	0.293	0.0756	DOCK7->chr1:62920399-63153969:-,dedicator_of_cytokinesis_7,IGKV1OR10-1->chr10:42680787-42681239:+,immunoglobulin_kappa_variable_1/OR10-1_(pseudogene)	CAKI2_KIDNEY	0.8	1	0.3686	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	ARHGAP26--RNF130	30	6	ARHGAP26	20298	chr5:142393681:+	RNF130	60762	chr5:179382669:-	ONLY_REF_SPLICE	YES	17	31	0.68	0.54	0.2836	0.0567	{Klijn_CCL:Kidney=1},ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,RNF130->chr5:179338651-179499118:-,ring_finger_protein_130	CAKI2_KIDNEY	0.54	0.68	0.3403	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	DST--SDCBP	18	2	DST	4600	chr6:56716195:-	SDCBP	133242	chr8:59477578:+	ONLY_REF_SPLICE	YES	20	17	0.5	0.54	0.1701	0.0189	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein	CAKI2_KIDNEY	0.5	0.54	0.189	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	UBTD2--NSG2	9	37	UBTD2	1480	chr5:171710596:-	NSG2	21173	chr5:173669685:+	INCL_NON_REF_SPLICE	YES	45	0	0.51	1	0.0851	0.3498	UBTD2->chr5:171636644-171711075:-,ubiquitin_domain_containing_2,NSG2->chr5:173472607-173670504:+	CAKI2_KIDNEY	0.51	1	0.4349	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	PCMT1--PDSS2	6	43	PCMT1	1514	chr6:150071092:+	PDSS2	23401	chr6:107531774:-	ONLY_REF_SPLICE	YES	219	32	0.18	0.6	0.0567	0.4065	PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase,PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2	CAKI2_KIDNEY	0.18	0.6	0.4632	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	NAA35--AC074212.3	14	1	NAA35	11495	chr9:88593296:+	AC074212.3	29439	chr19:46238635:+	ONLY_REF_SPLICE	YES	7	0	0.68	1	0.1323	0.0095	NAA35->N(alpha)-acetyltransferase_35,_NatC_auxiliary_subunit,chr9:88556061-88637213:+,AC074212.3->chr19:46236509-46267792:+	CAKI2_KIDNEY	0.68	1	0.1418	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	PCMT1--PDSS2	2	40	PCMT1	1514	chr6:150071092:+	PDSS2	24533	chr6:107519102:-	ONLY_REF_SPLICE	YES	219	37	0.16	0.53	0.0189	0.3781	PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase,PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2	CAKI2_KIDNEY	0.16	0.53	0.397	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	FBXW11--CTC-537E7.2	10	1	FBXW11	1416	chr5:171433462:-	CTC-537E7.2	27841	chr5:67827744:-	ONLY_REF_SPLICE	YES	89	0	0.11	1	0.0945	0.0095	FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,CTC-537E7.2->chr5:67827517-67829357:-	CAKI2_KIDNEY	0.11	1	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	ZNF500--SEPT12	9	4	ZNF500	4546	chr16:4812272:-	SEPT12	21277	chr16:4829787:-	ONLY_REF_SPLICE	YES	18	0	0.42	1	0.0851	0.0378	{Klijn_CCL:Kidney=1},LOCAL_REARRANGEMENT:-:[10045],ZNF500->chr16:4798240-4817625:-,zinc_finger_protein_500,SEPT12->chr16:4827670-4838522:-,septin_12	CAKI2_KIDNEY	0.42	1	0.1229	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	DST--SDCBP	5	17	DST	6509	chr6:56707853:-	SDCBP	133245	chr8:59477581:+	ONLY_REF_SPLICE	YES	25	16	0.47	0.58	0.0473	0.1607	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein	CAKI2_KIDNEY	0.47	0.58	0.208	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	GSR--RBPMS-AS1	7	0	GSR	8552	chr8:30553868:-	RBPMS-AS1	19887	chr8:30242674:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	GSR->chr8:30535583-30585443:-,glutathione_reductase,RBPMS-AS1->RBPMS_antisense_RNA_1,chr8:30239635-30242917:-	CAKI2_KIDNEY	1	1	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	IFT140--RBFOX1	6	2	IFT140	19893	chr16:1611986:-	RBFOX1	52889	chr16:7629779:+	ONLY_REF_SPLICE	YES	14	0	0.36	1	0.0567	0.0189	IFT140->chr16:1560428-1662111:-,intraflagellar_transport_140,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	CAKI2_KIDNEY	0.36	1	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	ARHGAP26--RNF130	3	12	ARHGAP26	18023	chr5:142311690:+	RNF130	58821	chr5:179390564:-	ONLY_REF_SPLICE	YES	20	68	0.43	0.18	0.0284	0.1134	{Klijn_CCL:Kidney=1},ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,RNF130->chr5:179338651-179499118:-,ring_finger_protein_130	CAKI2_KIDNEY	0.18	0.43	0.1418	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	DST--SDCBP	1	20	DST	6509	chr6:56707853:-	SDCBP	130727	chr8:59472843:+	ONLY_REF_SPLICE	YES	25	7	0.46	0.75	0.0095	0.1891	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein	CAKI2_KIDNEY	0.46	0.75	0.1986	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	ALDOA--FTH1	5	0	ALDOA	7435	chr16:30077207:+	FTH1	15146	chr11:61734993:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	CAKI2_KIDNEY	1	1	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	RP11-933H2.4--NGEF	3	3	RP11-933H2.4	2239	chr3:131095456:-	NGEF	19007	chr2:233785295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0.0284	RP11-933H2.4->chr3:131043936-131100319:-,NGEF->chr2:233743396-233877982:-,neuronal_guanine_nucleotide_exchange_factor	CAKI2_KIDNEY	1	1	0.0568	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	RP11-222A11.1--ADPGK	3	2	RP11-222A11.1	6870	chr10:67375519:+	ADPGK	28388	chr15:73078187:-	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0284	0.0189	RP11-222A11.1->chr10:67330096-67526299:+,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	CAKI2_KIDNEY	0.29	1	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	ALDOA--CA12	3	0	ALDOA	9174	chr16:30078946:+	CA12	24218	chr15:63631088:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,CA12->carbonic_anhydrase_12,chr15:63613577-63674360:-	CAKI2_KIDNEY	1	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	CRB1--ATP6V1G3	3	0	CRB1	4445	chr1:197273543:+	ATP6V1G3	36656	chr1:198498311:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	CRB1->chr1:197170592-197447585:+,crumbs_1,_cell_polarity_complex_component,ATP6V1G3->ATPase_H+_transporting_V1_subunit_G3,chr1:198492352-198510075:-	CAKI2_KIDNEY	1	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	CRB1--ATP6V1G3	3	0	CRB1	1127	chr1:197170718:+	ATP6V1G3	36656	chr1:198498311:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	CRB1->chr1:197170592-197447585:+,crumbs_1,_cell_polarity_complex_component,ATP6V1G3->ATPase_H+_transporting_V1_subunit_G3,chr1:198492352-198510075:-	CAKI2_KIDNEY	1	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	AKR1C2--AKR1E2	2	0	AKR1C2	9530	chr10:5045944:-	AKR1E2	25878	chr10:4872867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,AKR1C2->aldo-keto_reductase_family_1,_member_C2,chr10:5029967-5060223:-,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	CAKI2_KIDNEY	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	DDHD1--COL4A1	2	0	DDHD1	4498	chr14:53570401:-	COL4A1	48486	chr13:110835623:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	DDHD1->DDHD_domain_containing_1,chr14:53510686-53620000:-,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	CAKI2_KIDNEY	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	PELI2--PTPN4	2	0	PELI2	3527	chr14:56645182:+	PTPN4	19960	chr2:120567413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PELI2->chr14:56584532-56768244:+,pellino_E3_ubiquitin_protein_ligase_family_member_2,PTPN4->chr2:120517207-120741394:+,protein_tyrosine_phosphatase,_non-receptor_type_4	CAKI2_KIDNEY	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	PRRC1--NDUFAF2	2	0	PRRC1	1168	chr5:126853468:+	NDUFAF2	25339	chr5:60448531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PRRC1->chr5:126853301-126890781:+,proline_rich_coiled-coil_1,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	CAKI2_KIDNEY	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	STOM--PHF19	2	0	STOM	7826	chr9:124110293:-	PHF19	28925	chr9:123620564:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	STOM->chr9:124101355-124132531:-,stomatin,PHF19->PHD_finger_protein_19,chr9:123617977-123639606:-	CAKI2_KIDNEY	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	DST--SDCBP	1	2	DST	4600	chr6:56716195:-	SDCBP	133245	chr8:59477581:+	ONLY_REF_SPLICE	YES	20	16	0.13	0.16	0.0095	0.0189	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein	CAKI2_KIDNEY	0.13	0.16	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	RP11-933H2.4--NGEF	1	2	RP11-933H2.4	1143	chr3:131100177:-	NGEF	19007	chr2:233785295:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0095	0.0189	RP11-933H2.4->chr3:131043936-131100319:-,NGEF->chr2:233743396-233877982:-,neuronal_guanine_nucleotide_exchange_factor	CAKI2_KIDNEY	0.6	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000234
JHH6_LIVER	DNM2--QTRT1	88	80	DNM2	4114	chr19:10870487:+	QTRT1	41366	chr19:10812626:+	ONLY_REF_SPLICE	YES	269	178	0.38	0.49	0.8752	0.7956	LOCAL_REARRANGEMENT:+:[4642],DNM2->chr19:10828755-10944164:+,dynamin_2,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	JHH6_LIVER	0.38	0.49	1.6708	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	IGSF3--GGT1	89	59	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	34	121	0.81	0.55	0.8851	0.5868	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	JHH6_LIVER	0.55	0.81	1.4719	TRUE	1	1	0	8	1	TRUE	ACH-000217
JHH6_LIVER	PHYH--LINC00709	31	16	PHYH	10131	chr10:13325690:-	LINC00709	16854	chr10:9328555:+	ONLY_REF_SPLICE	YES	100	0	0.32	1	0.3083	0.1591	PHYH->chr10:13319796-13344412:-,phytanoyl-CoA_2-hydroxylase,LINC00709->chr10:9317796-9329020:+,long_intergenic_non-protein_coding_RNA_709	JHH6_LIVER	0.32	1	0.4674	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	IGSF3--GGT1	7	58	IGSF3	13000	chr1:117131317:-	GGT1	26901	chr22:25003923:+	INCL_NON_REF_SPLICE	YES	34	120	0.66	0.35	0.0696	0.5768	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	JHH6_LIVER	0.35	0.66	0.6464	TRUE	1	1	0	8	1	TRUE	ACH-000217
JHH6_LIVER	DNM2--QTRT1	1	80	DNM2	5632	chr19:10874292:+	QTRT1	41366	chr19:10812626:+	ONLY_REF_SPLICE	NO	297	178	0.21	0.31	0.0099	0.7956	LOCAL_REARRANGEMENT:+:[4642],DNM2->chr19:10828755-10944164:+,dynamin_2,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	JHH6_LIVER	0.21	0.31	0.8055	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	FTL--RPL39	17	0	FTL	1095	chr19:49468652:+	RPL39	5592	chrX:118925593:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1691	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	JHH6_LIVER	1	1	0.1691	TRUE	0	0	0	3	0	TRUE	ACH-000217
JHH6_LIVER	DNM2--QTRT1	2	56	DNM2	4114	chr19:10870487:+	QTRT1	41532	chr19:10812792:+	ONLY_REF_SPLICE	YES	269	189	0.18	0.23	0.0199	0.5569	LOCAL_REARRANGEMENT:+:[4642],DNM2->chr19:10828755-10944164:+,dynamin_2,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	JHH6_LIVER	0.18	0.23	0.5768	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	MAP4K4--ANKRD36	11	5	MAP4K4	2689	chr2:102315000:+	ANKRD36	74441	chr2:97864200:+	ONLY_REF_SPLICE	YES	142	24	0.1	0.4	0.1094	0.0497	MAP4K4->chr2:102313312-102511149:+,mitogen-activated_protein_kinase_kinase_kinase_kinase_4,ANKRD36->ankyrin_repeat_domain_36,chr2:97779233-97930258:+	JHH6_LIVER	0.1	0.4	0.1591	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	DNM2--QTRT1	2	39	DNM2	1325	chr19:10829079:+	QTRT1	41366	chr19:10812626:+	ONLY_REF_SPLICE	YES	176	178	0.19	0.19	0.0199	0.3879	LOCAL_REARRANGEMENT:+:[4642],DNM2->chr19:10828755-10944164:+,dynamin_2,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	JHH6_LIVER	0.19	0.19	0.4078	TRUE	0	2	0	2	1	TRUE	ACH-000217
JHH6_LIVER	MAN2B1--CTC-543D15.3	4	4	MAN2B1	11531	chr19:12762967:-	CTC-543D15.3	20360	chr19:9620216:+	ONLY_REF_SPLICE	YES	152	0	0.05	1	0.0398	0.0398	MAN2B1->chr19:12757325-12777556:-,mannosidase_alpha_class_2B_member_1,CTC-543D15.3->chr19:9609354-9620755:+	JHH6_LIVER	0.05	1	0.0796	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	ADORA2B--UBB	3	0	ADORA2B	1667	chr17:15848897:+	UBB	8656	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	JHH6_LIVER	1	1	0.0298	TRUE	0	1	0	5	1	TRUE	ACH-000217
JHH6_LIVER	FRMD4A--SP3	3	0	FRMD4A	4125	chr10:14372057:-	SP3	52043	chr2:174783513:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-,SP3->Sp3_transcription_factor,chr2:174771187-174830430:-	JHH6_LIVER	1	1	0.0298	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	FTL--RPL39	3	0	FTL	1116	chr19:49468673:+	RPL39	5614	chrX:118925571:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	JHH6_LIVER	1	1	0.0298	TRUE	0	0	0	3	0	TRUE	ACH-000217
JHH6_LIVER	C17orf76-AS1--CYHR1	2	0	C17orf76-AS1	1593	chr17:16342728:+	CYHR1	22066	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	C17orf76-AS1->chr17:16342136-16381992:+,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	JHH6_LIVER	1	1	0.0199	TRUE	0	0	0	2	0	TRUE	ACH-000217
JHH6_LIVER	CHFR--MTX2	2	0	CHFR	2239	chr12:133522207:-	MTX2	36632	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,MTX2->chr2:177134123-177202753:+,metaxin_2	JHH6_LIVER	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	RABGEF1--IMMP2L	2	0	RABGEF1	1095	chr7:66147245:+	IMMP2L	25513	chr7:111201979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	RABGEF1->RAB_guanine_nucleotide_exchange_factor_1,chr7:66147151-66276451:+,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	JHH6_LIVER	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	RBM10--GCFC2	2	0	RBM10	2759	chrX:47006897:+	GCFC2	31751	chr2:75900646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	RBM10->ArcherDX_panel,FoundationOne_panel,RNA_binding_motif_protein_10,chrX:47004268-47046212:+,GCFC2->GC-rich_sequence_DNA-binding_factor_2,chr2:75879126-75938115:-	JHH6_LIVER	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	RCC1--ITGB3BP	2	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	JHH6_LIVER	1	1	0.0199	TRUE	0	6	0	9	2	TRUE	ACH-000217
JHH6_LIVER	TBC1D8--NPAS2	2	0	TBC1D8	8357	chr2:101706716:-	NPAS2	33768	chr2:101541608:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LOCAL_INVERSION:-:+:[10788],TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,NPAS2->chr2:101436614-101613291:+,neuronal_PAS_domain_protein_2	JHH6_LIVER	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	AC011530.4--AC074212.3	1	2	AC011530.4	1380	chr19:46288852:-	AC074212.3	9753	chr19:46238635:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0099	0.0199	LOCAL_INVERSION:-:+:[14903],AC011530.4->chr19:46282695-46289231:-,AC074212.3->chr19:46236509-46267792:+	JHH6_LIVER	0.75	1	0.0298	TRUE	0	0	0	1	0	TRUE	ACH-000217
MKN74_STOMACH	ITGB4--MYO15B	151	65	ITGB4	22956	chr17:73748658:+	MYO15B	41921	chr17:73598598:+	ONLY_REF_SPLICE	YES	519	3	0.29	0.99	1.6444	0.7078	LOCAL_REARRANGEMENT:+:[94479],ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4,MYO15B->chr17:73584139-73622929:+,myosin_XVB	MKN74_STOMACH	0.29	0.99	2.3522	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	RERE--RPL22	56	29	RERE	1484	chr1:8877219:-	RPL22	46850	chr1:6257816:-	ONLY_REF_SPLICE	YES	7	25	0.92	0.77	0.6098	0.3158	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	MKN74_STOMACH	0.77	0.92	0.9256	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	CTD-3138B18.5--CTB-66B24.1	49	41	CTD-3138B18.5	1286	chr19:58789889:-	CTB-66B24.1	8767	chr19:6125545:+	ONLY_REF_SPLICE	YES	15	0	0.86	1	0.5336	0.4465	CTD-3138B18.5->chr19:58768639-58790174:-,CTB-66B24.1->chr19:6109333-6125808:+	MKN74_STOMACH	0.86	1	0.9801	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	SSSCA1-AS1--ERP44	42	16	SSSCA1-AS1	1578	chr11:65337167:-	ERP44	5872	chr9:102822454:-	INCL_NON_REF_SPLICE	YES	0	324	1	0.15	0.4574	0.1742	SSSCA1-AS1->SSSCA1_antisense_RNA_1_(head_to_head),chr11:65337131-65337744:-,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	MKN74_STOMACH	0.15	1	0.6316	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	CCNF--ABCA17P	18	9	CCNF	9310	chr16:2493801:+	ABCA17P	36311	chr16:2436105:+	ONLY_REF_SPLICE	YES	22	0	0.55	1	0.196	0.098	LOCAL_REARRANGEMENT:+:[2695],CCNF->Oncogene{Bushman},chr16:2479395-2508855:+,cyclin_F,ABCA17P->ATP_binding_cassette_subfamily_A_member_17,_pseudogene,chr16:2389151-2476700:+	MKN74_STOMACH	0.55	1	0.294	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	RERE--RPL22	4	33	RERE	2669	chr1:8852463:-	RPL22	46850	chr1:6257816:-	ONLY_REF_SPLICE	YES	9	25	0.8	0.6	0.0436	0.3594	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	MKN74_STOMACH	0.6	0.8	0.403	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	ARMC4P1--RP11-748L13.2	3	0	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	MKN74_STOMACH	1	1	0.0327	TRUE	1	34	11	8	34	TRUE	ACH-000758
MKN74_STOMACH	PPME1--PGM2L1	3	0	PPME1	3142	chr11:73915490:+	PGM2L1	25431	chr11:74085627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[75615],PPME1->chr11:73882144-73965748:+,protein_phosphatase_methylesterase_1,PGM2L1->chr11:74041363-74109518:-,phosphoglucomutase_2-like_1	MKN74_STOMACH	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	SYNRG--RP11-115K3.2	2	2	SYNRG	20601	chr17:35913217:-	RP11-115K3.2	40652	chr17:36233931:-	ONLY_REF_SPLICE	YES	91	0	0.04	1	0.0218	0.0218	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,RP11-115K3.2->chr17:36187925-36244363:-	MKN74_STOMACH	0.04	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	ANAPC1--IWS1	2	0	ANAPC1	22321	chr2:112588863:-	IWS1	57004	chr2:128281367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-,IWS1->IWS1,_SUPT6H_interacting_protein,chr2:128193783-128284462:-	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	ARHGAP8--SREBF2	2	0	ARHGAP8	10264	chr22:45162069:+	SREBF2	35224	chr22:42269802:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ARHGAP8->Rho_GTPase_activating_protein_8,chr22:45098355-45258665:+,SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	CCNF--ABCA17P	2	0	CCNF	9310	chr16:2493801:+	ABCA17P	37464	chr16:2445841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	LOCAL_REARRANGEMENT:+:[2695],CCNF->Oncogene{Bushman},chr16:2479395-2508855:+,cyclin_F,ABCA17P->ATP_binding_cassette_subfamily_A_member_17,_pseudogene,chr16:2389151-2476700:+	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	CPSF6--ZNF131	2	0	CPSF6	11046	chr12:69656342:+	ZNF131	30348	chr5:43122141:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,ZNF131->chr5:43065278-43192123:+,zinc_finger_protein_131	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	HSF2--SERINC1	2	0	HSF2	9230	chr6:122744831:+	SERINC1	17099	chr6:122779826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Muscle=[count:2=pct:0.9]},GTEx_v2:{count=3;pct=0.03%;dist=Muscle_-_Skeletal=2,Lung=1},{Klijn_CCL:Head-Neck=1},LOCAL_INVERSION:+:-:[10235],HSF2->chr6:122720691-122754264:+,heat_shock_transcription_factor_2,SERINC1->chr6:122764499-122792967:-,serine_incorporator_1	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	IPO7--DENND5A	2	0	IPO7	1226	chr11:9406394:+	DENND5A	33660	chr11:9228329:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Heart_-_Atrial_Appendage=1},IPO7->chr11:9406169-9469673:+,importin_7,DENND5A->DENN_domain_containing_5A,chr11:9160372-9286937:-	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	MPP7--WAC	2	0	MPP7	7794	chr10:28527497:-	WAC	39993	chr10:28878665:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	MPP7->chr10:28339922-28623415:-,membrane_palmitoylated_protein_7,WAC->WW_domain_containing_adaptor_with_coiled-coil,chr10:28821422-28912041:+	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	RPL9--UBE2K	2	0	RPL9	3543	chr4:39458026:-	UBE2K	15187	chr4:39779980:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},RPL9->chr4:39455744-39460568:-,ribosomal_protein_L9,UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	2	0	TRUE	ACH-000758
MKN74_STOMACH	PLEKHH1--FAM71D	1	2	PLEKHH1	23058	chr14:68050841:+	FAM71D	38883	chr14:67669811:+	ONLY_REF_SPLICE	YES	29	0	0.09	1	0.0109	0.0218	PLEKHH1->chr14:68000018-68056329:+,pleckstrin_homology,_MyTH4_and_FERM_domain_containing_H1,FAM71D->chr14:67656110-67695267:+,family_with_sequence_similarity_71_member_D	MKN74_STOMACH	0.09	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	RP11-296O14.3--TNFSF4	1	2	RP11-296O14.3	4452	chr1:173409602:-	TNFSF4	11987	chr1:173157708:-	ONLY_REF_SPLICE	NO	7	2	0.3	0.6	0.0109	0.0218	RP11-296O14.3->chr1:173386932-173430501:-,TNFSF4->chr1:173152873-173176452:-,tumor_necrosis_factor_superfamily_member_4	MKN74_STOMACH	0.3	0.6	0.0327	TRUE	0	7	0	1	7	TRUE	ACH-000758
HUH1_LIVER	NCOA2--LYN	118	30	NCOA2	1106	chr8:71315935:-	LYN	51481	chr8:56922467:+	ONLY_REF_SPLICE	YES	2	36	0.99	0.8	1.3451	0.342	NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,LYN->ArcherDX_panel,FoundationOne_panel,LYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr8:56792372-56923940:+	HUH1_LIVER	0.8	0.99	1.6871	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	CASC9--FER1L6-AS2	53	9	CASC9	1521	chr8:76236456:-	FER1L6-AS2	12627	chr8:125059934:-	ONLY_REF_SPLICE	YES	21	0	0.75	1	0.6041	0.1026	HGNC_GENEFAM,CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,FER1L6-AS2->FER1L6_antisense_RNA_2,chr8:125058314-125183763:-	HUH1_LIVER	0.75	1	0.7067	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	RP11-383H13.1--PPP1R42	47	13	RP11-383H13.1	3349	chr8:72756657:+	PPP1R42	40505	chr8:67876569:-	ONLY_REF_SPLICE	YES	13	1	0.82	0.98	0.5357	0.1482	RP11-383H13.1->chr8:72740402-73030628:+,PPP1R42->chr8:67876334-67968839:-,protein_phosphatase_1_regulatory_subunit_42	HUH1_LIVER	0.82	0.98	0.6839	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	SIK2--C11orf88	33	31	SIK2	3489	chr11:111491126:+	C11orf88	30580	chr11:111404471:+	ONLY_REF_SPLICE	YES	10	0	0.86	1	0.3762	0.3534	LOCAL_REARRANGEMENT:+:[65359],SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,C11orf88->chr11:111385510-111407756:+,chromosome_11_open_reading_frame_88	HUH1_LIVER	0.86	1	0.7296	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	SPECC1--NTN1	25	9	SPECC1	11569	chr17:20013875:+	NTN1	46748	chr17:9124485:+	ONLY_REF_SPLICE	YES	11	0	0.76	1	0.285	0.1026	SPECC1->Oncogene{Bushman},chr17:19912657-20222339:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1,NTN1->chr17:8924859-9147317:+,netrin_1	HUH1_LIVER	0.76	1	0.3876	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	EMG1--SLC4A8	22	18	EMG1	4516	chr12:7084540:+	SLC4A8	35094	chr12:51864176:+	ONLY_REF_SPLICE	YES	80	0	0.33	1	0.2508	0.2052	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,SLC4A8->chr12:51785101-51902980:+,solute_carrier_family_4_member_8	HUH1_LIVER	0.33	1	0.456	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	RALGPS2--LIX1L	20	5	RALGPS2	1255	chr1:178694554:+	LIX1L	31136	chr1:145487304:+	ONLY_REF_SPLICE	YES	10	14	0.71	0.64	0.228	0.057	RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+,LIX1L->chr1:145477085-145501669:+,limb_and_CNS_expressed_1_like	HUH1_LIVER	0.64	0.71	0.285	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	METTL13--FCRL4	18	4	METTL13	4433	chr1:171755218:+	FCRL4	18032	chr1:157559248:-	ONLY_REF_SPLICE	YES	145	0	0.13	1	0.2052	0.0456	METTL13->chr1:171750788-171783163:+,methyltransferase_like_13,FCRL4->Fc_receptor_like_4,Oncogene{Bushman},chr1:157543539-157567870:-	HUH1_LIVER	0.13	1	0.2508	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MIB1--BAGE2	17	4	MIB1	8339	chr18:19359646:+	BAGE2	43858	chr21:11039429:-	ONLY_REF_SPLICE	YES	18	0	0.54	1	0.1938	0.0456	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	HUH1_LIVER	0.54	1	0.2394	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	LYN--NCOA2	14	6	LYN	14965	chr8:56912108:+	NCOA2	23320	chr8:71209035:-	ONLY_REF_SPLICE	YES	31	3	0.39	0.87	0.1596	0.0684	LYN->ArcherDX_panel,FoundationOne_panel,LYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr8:56792372-56923940:+,NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2	HUH1_LIVER	0.39	0.87	0.228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	POLR3GL--RP11-428K3.1	13	10	POLR3GL	1123	chr1:145470266:-	RP11-428K3.1	9314	chr1:178694554:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1482	0.114	POLR3GL->chr1:145456236-145470388:-,polymerase_(RNA)_III_subunit_G_like,RP11-428K3.1->chr1:178693441-178695420:-	HUH1_LIVER	0.92	1	0.2622	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	CLPTM1L--CTD-2231H16.1	13	7	CLPTM1L	8467	chr5:1331914:-	CTD-2231H16.1	23048	chr5:113366:+	ONLY_REF_SPLICE	YES	155	1	0.11	0.95	0.1482	0.0798	CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-,CTD-2231H16.1->chr5:92266-139978:+	HUH1_LIVER	0.11	0.95	0.228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	SIK2--C11orf88	6	31	SIK2	3489	chr11:111491126:+	C11orf88	29499	chr11:111395608:+	ONLY_REF_SPLICE	YES	10	0	0.79	1	0.0684	0.3534	LOCAL_REARRANGEMENT:+:[65359],SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,C11orf88->chr11:111385510-111407756:+,chromosome_11_open_reading_frame_88	HUH1_LIVER	0.79	1	0.4218	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	RP11-383H13.1--PPP1R42	8	15	RP11-383H13.1	3349	chr8:72756657:+	PPP1R42	39345	chr8:67883375:-	ONLY_REF_SPLICE	YES	13	0	0.64	1	0.0912	0.171	RP11-383H13.1->chr8:72740402-73030628:+,PPP1R42->chr8:67876334-67968839:-,protein_phosphatase_1_regulatory_subunit_42	HUH1_LIVER	0.64	1	0.2622	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	RP11-383H13.1--PPP1R42	11	0	RP11-383H13.1	1049	chr8:72740450:+	PPP1R42	40505	chr8:67876569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1254	0	RP11-383H13.1->chr8:72740402-73030628:+,PPP1R42->chr8:67876334-67968839:-,protein_phosphatase_1_regulatory_subunit_42	HUH1_LIVER	1	1	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	CLPTM1L--CTD-2231H16.1	9	7	CLPTM1L	9986	chr5:1330395:-	CTD-2231H16.1	23048	chr5:113366:+	ONLY_REF_SPLICE	YES	159	1	0.09	0.94	0.1026	0.0798	CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-,CTD-2231H16.1->chr5:92266-139978:+	HUH1_LIVER	0.09	0.94	0.1824	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	NCOA2--LYN	3	30	NCOA2	2531	chr8:71314398:-	LYN	51481	chr8:56922467:+	ONLY_REF_SPLICE	YES	5	36	0.87	0.48	0.0342	0.342	NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,LYN->ArcherDX_panel,FoundationOne_panel,LYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr8:56792372-56923940:+	HUH1_LIVER	0.48	0.87	0.3762	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	PHRF1--LRRC56	7	2	PHRF1	9811	chr11:601701:+	LRRC56	27075	chr11:549902:+	ONLY_REF_SPLICE	YES	61	4	0.13	0.69	0.0798	0.0228	LOCAL_REARRANGEMENT:+:[21570],PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,LRRC56->chr11:537527-554916:+,leucine_rich_repeat_containing_56	HUH1_LIVER	0.13	0.69	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	PCMTD1--CACNA1E	6	5	PCMTD1	11735	chr8:52744004:-	CACNA1E	28960	chr1:181620474:+	ONLY_REF_SPLICE	YES	28	0	0.28	1	0.0684	0.057	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,CACNA1E->calcium_voltage-gated_channel_subunit_alpha1_E,chr1:181382238-181777219:+	HUH1_LIVER	0.28	1	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	SNRPD3--SPECC1L	6	2	SNRPD3	5338	chr22:24968029:+	SPECC1L	32776	chr22:24807556:+	ONLY_REF_SPLICE	YES	33	17	0.2	0.32	0.0684	0.0228	SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	HUH1_LIVER	0.2	0.32	0.0912	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	SIK2--C11orf88	2	16	SIK2	3489	chr11:111491126:+	C11orf88	31246	chr11:111405137:+	ONLY_REF_SPLICE	NO	10	0	0.64	1	0.0228	0.1824	LOCAL_REARRANGEMENT:+:[65359],SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,C11orf88->chr11:111385510-111407756:+,chromosome_11_open_reading_frame_88	HUH1_LIVER	0.64	1	0.2052	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MACF1--CTSE	5	1	MACF1	36038	chr1:39776672:+	CTSE	127985	chr1:206320201:+	ONLY_REF_SPLICE	YES	11	2	0.35	0.75	0.057	0.0114	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,CTSE->cathepsin_E,chr1:206317459-206332104:+	HUH1_LIVER	0.35	0.75	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	CTD-3116E22.6--ZNF274	3	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	HUH1_LIVER	1	1	0.0342	TRUE	0	0	0	13	0	TRUE	ACH-000475
HUH1_LIVER	RP11-383H13.1--PPP1R42	3	0	RP11-383H13.1	1049	chr8:72740450:+	PPP1R42	39345	chr8:67883375:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	RP11-383H13.1->chr8:72740402-73030628:+,PPP1R42->chr8:67876334-67968839:-,protein_phosphatase_1_regulatory_subunit_42	HUH1_LIVER	1	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	EMG1--SLC4A8	1	7	EMG1	4286	chr12:7084310:+	SLC4A8	35094	chr12:51864176:+	ONLY_REF_SPLICE	NO	109	0	0.07	1	0.0114	0.0798	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,SLC4A8->chr12:51785101-51902980:+,solute_carrier_family_4_member_8	HUH1_LIVER	0.07	1	0.0912	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	CLPTM1L--CTD-2231H16.1	1	6	CLPTM1L	8463	chr5:1331918:-	CTD-2231H16.1	23048	chr5:113366:+	ONLY_REF_SPLICE	NO	148	1	0.05	0.88	0.0114	0.0684	CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-,CTD-2231H16.1->chr5:92266-139978:+	HUH1_LIVER	0.05	0.88	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	CAPN15--NOC4L	2	1	CAPN15	2366	chr16:583998:+	NOC4L	24151	chr12:132635526:+	ONLY_REF_SPLICE	NO	7	86	0.3	0.03	0.0228	0.0114	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CAPN15->calpain_15,chr16:577717-604636:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	HUH1_LIVER	0.03	0.3	0.0342	TRUE	0	6	0	4	3	TRUE	ACH-000475
HUH1_LIVER	ATXN7--THOC7	2	0	ATXN7	5937	chr3:63898901:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	HUH1_LIVER	1	1	0.0228	TRUE	0	4	3	3	1	TRUE	ACH-000475
HUH1_LIVER	BRWD1--CEP192	2	0	BRWD1	4942	chr21:40670358:-	CEP192	87080	chr18:13087016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,CEP192->centrosomal_protein_192,chr18:12991361-13125051:+	HUH1_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	CTC-260F20.3--CCT3	2	0	CTC-260F20.3	1106	chr19:19627141:+	CCT3	16813	chr1:156304566:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CTC-260F20.3->chr19:19627036-19646885:+,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	HUH1_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	HPS1--SMARCA4	2	0	HPS1	3352	chr10:100202881:-	SMARCA4	58328	chr19:11150134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	HPS1->HPS1,_biogenesis_of_lysosomal_organelles_complex_3_subunit_1,chr10:100175955-100206684:-,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	HUH1_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	KIAA0368--PTGR1	2	0	KIAA0368	2242	chr9:114245784:-	PTGR1	59824	chr9:114348445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	LOCAL_REARRANGEMENT:-:[64977],KIAA0368->KIAA0368,chr9:114122972-114247025:-,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	HUH1_LIVER	1	1	0.0228	TRUE	0	1	0	1	0	TRUE	ACH-000475
HUH1_LIVER	NPC1--ANKRD29	2	0	NPC1	24261	chr18:21114410:-	ANKRD29	41353	chr18:21218911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	LOCAL_REARRANGEMENT:-:[12028],NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,ANKRD29->ankyrin_repeat_domain_29,chr18:21178890-21242849:-	HUH1_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	PTGR1--RPLP1	2	0	PTGR1	12153	chr9:114332371:-	RPLP1	19781	chr15:69745986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	HUH1_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	TXN--PTGR1	2	0	TXN	1229	chr9:113018692:-	PTGR1	14662	chr9:114348445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	TXN->Oncogene{Bushman},chr9:113006091-113018920:-,thioredoxin,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	HUH1_LIVER	1	1	0.0228	TRUE	0	0	0	3	0	TRUE	ACH-000475
HUH1_LIVER	RP6-99M1.2--TM4SF2	1	1	RP6-99M1.2	1489	chrX:45629189:-	TM4SF2	11064	chrX:38525375:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0114	0.0114	RP6-99M1.2->chrX:45604639-45629677:-,TM4SF2->chrX:37208583-38546928:+	HUH1_LIVER	0.67	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HCC1195_LUNG	LPCAT1--SDHAP3	414	96	LPCAT1	4774	chr5:1494815:-	SDHAP3	32592	chr5:1574410:-	ONLY_REF_SPLICE	YES	671	43	0.43	0.92	3.3861	0.7852	LOCAL_REARRANGEMENT:-:[44545],LPCAT1->chr5:1456595-1524092:-,lysophosphatidylcholine_acyltransferase_1,SDHAP3->chr5:1568637-1594735:-,succinate_dehydrogenase_complex_flavoprotein_subunit_A_pseudogene_3	HCC1195_LUNG	0.43	0.92	4.1713	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	WSB1--STXBP4	189	34	WSB1	7698	chr17:25633908:+	STXBP4	35641	chr17:53218671:+	ONLY_REF_SPLICE	YES	277	4	0.45	0.98	1.5458	0.2781	WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,STXBP4->chr17:53046088-53241646:+,syntaxin_binding_protein_4	HCC1195_LUNG	0.45	0.98	1.8239	TRUE	0	0	0	2	0	TRUE	ACH-000868
HCC1195_LUNG	SDHC--NDUFS2	47	9	SDHC	6984	chr1:161310445:+	NDUFS2	20255	chr1:161179647:+	ONLY_REF_SPLICE	YES	566	313	0.09	0.15	0.3844	0.0736	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[99862],SDHC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:161284047-161332984:+,succinate_dehydrogenase_complex_subunit_C,NDUFS2->NADH:ubiquinone_oxidoreductase_core_subunit_S2,chr1:161166894-161184185:+	HCC1195_LUNG	0.09	0.15	0.458	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	HECTD1--SCFD1	39	21	HECTD1	3008	chr14:31675003:-	SCFD1	53171	chr14:31107331:+	ONLY_REF_SPLICE	YES	182	425	0.25	0.12	0.319	0.1718	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,SCFD1->chr14:31091318-31205018:+,sec1_family_domain_containing_1	HCC1195_LUNG	0.12	0.25	0.4908	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	PTPN12--CCDC146	36	11	PTPN12	1371	chr7:77166962:+	CCDC146	41802	chr7:76908069:+	ONLY_REF_SPLICE	YES	69	0	0.41	1	0.2944	0.09	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	HCC1195_LUNG	0.41	1	0.3844	TRUE	0	2	0	1	2	TRUE	ACH-000868
HCC1195_LUNG	MYH9--CTD-3138B18.5	22	10	MYH9	28650	chr22:36692889:-	CTD-3138B18.5	45880	chr19:58771057:-	ONLY_REF_SPLICE	YES	254	11	0.11	0.74	0.1799	0.0818	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,CTD-3138B18.5->chr19:58768639-58790174:-	HCC1195_LUNG	0.11	0.74	0.2617	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	NEDD4L--MDGA2	14	5	NEDD4L	9460	chr18:55833093:+	MDGA2	65267	chr14:47770753:-	ONLY_REF_SPLICE	YES	23	0	0.45	1	0.1145	0.0409	NEDD4L->chr18:55711599-56068772:+,neural_precursor_cell_expressed,_developmentally_down-regulated_4-like,_E3_ubiquitin_protein_ligase,MDGA2->MAM_domain_containing_glycosylphosphatidylinositol_anchor_2,chr14:47308826-48144157:-,chr14:47311134-48143999:-	HCC1195_LUNG	0.45	1	0.1554	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	SNX29--ZNF675	12	11	SNX29	22725	chr16:12371893:+	ZNF675	53329	chr19:23717119:-	ONLY_REF_SPLICE	YES	13	0	0.64	1	0.0981	0.09	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,ZNF675->chr19:23708433-23870022:-,zinc_finger_protein_675	HCC1195_LUNG	0.64	1	0.1881	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	ATOH8--USP39	12	6	ATOH8	5929	chr2:85991305:+	USP39	25793	chr2:85857844:+	ONLY_REF_SPLICE	YES	0	223	1	0.07	0.0981	0.0491	ATOH8->atonal_bHLH_transcription_factor_8,chr2:85978467-86015189:+,USP39->Oncogene{Bushman},chr2:85829979-85876403:+,ubiquitin_specific_peptidase_39	HCC1195_LUNG	0.07	1	0.1472	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	SNX29--ZNF675	11	5	SNX29	22725	chr16:12371893:+	ZNF675	54467	chr19:23710816:-	ONLY_REF_SPLICE	YES	13	0	0.55	1	0.09	0.0409	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,ZNF675->chr19:23708433-23870022:-,zinc_finger_protein_675	HCC1195_LUNG	0.55	1	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	ST7--CTTNBP2	8	5	ST7	1454	chr7:116593745:+	CTTNBP2	42906	chr7:117451043:-	ONLY_REF_SPLICE	YES	39	0	0.25	1	0.0654	0.0409	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,CTTNBP2->chr7:117350705-117514193:-,cortactin_binding_protein_2	HCC1195_LUNG	0.25	1	0.1063	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	ENO1--H1F0	7	0	ENO1	10842	chr1:8924027:-	H1F0	16841	chr22:38201603:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,H1F0->H1_histone_family_member_0,chr22:38201114-38203442:+	HCC1195_LUNG	1	1	0.0573	TRUE	0	0	0	4	0	TRUE	ACH-000868
HCC1195_LUNG	KIAA0753--MED31	6	1	KIAA0753	14707	chr17:6510193:-	MED31	29454	chr17:6547979:-	ONLY_REF_SPLICE	YES	14	88	0.33	0.07	0.0491	0.0082	LOCAL_REARRANGEMENT:-:[2388],KIAA0753->KIAA0753,chr17:6481468-6544247:-,MED31->chr17:6546635-6554954:-,mediator_complex_subunit_31	HCC1195_LUNG	0.07	0.33	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	PTPN12--CCDC146	3	11	PTPN12	1832	chr7:77167423:+	CCDC146	41802	chr7:76908069:+	ONLY_REF_SPLICE	YES	120	0	0.1	1	0.0245	0.09	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	HCC1195_LUNG	0.1	1	0.1145	TRUE	0	2	0	1	2	TRUE	ACH-000868
HCC1195_LUNG	EXOC4--IGH@	5	0	EXOC4	21717	chr7:133314894:+	IGH@	43986	chr14:107218980:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0409	0	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,IGH@->Oncogene{Bushman}	HCC1195_LUNG	1	1	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	CTD-2251F13.1--PRKD1	4	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	HCC1195_LUNG	1	1	0.0327	TRUE	0	3	0	9	3	TRUE	ACH-000868
HCC1195_LUNG	PTPN6--PTMS	4	0	PTPN6	1272	chr12:7055902:+	PTMS	17577	chr12:6878769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	PTPN6->Oncogene{Bushman},chr12:7055631-7070479:+,protein_tyrosine_phosphatase,_non-receptor_type_6,PTMS->chr12:6874682-6880116:+,parathymosin	HCC1195_LUNG	1	1	0.0327	TRUE	0	1	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	SCAF11--PTPRD	4	0	SCAF11	6095	chr12:46357890:-	PTPRD	42946	chr9:9018735:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	HCC1195_LUNG	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	CTD-2251F13.1--PRKD1	3	0	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	HCC1195_LUNG	1	1	0.0245	TRUE	0	3	0	8	3	TRUE	ACH-000868
HCC1195_LUNG	CTD-2251F13.1--PRKD1	3	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	HCC1195_LUNG	1	1	0.0245	TRUE	0	3	0	9	3	TRUE	ACH-000868
HCC1195_LUNG	EXOC4--IGH@	3	0	EXOC4	21717	chr7:133314894:+	IGH@	45520	chr14:107211242:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,IGH@->Oncogene{Bushman}	HCC1195_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	EXOC4--IGH@	3	0	EXOC4	21717	chr7:133314894:+	IGH@	47060	chr14:107199242:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,IGH@->Oncogene{Bushman}	HCC1195_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	PABPC1--TAGLN2	3	0	PABPC1	2008	chr8:101734030:-	TAGLN2	21666	chr1:159890316:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0245	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,TAGLN2->chr1:159887897-159895522:-,transgelin_2	HCC1195_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	PTPN23--NDUFA6	3	0	PTPN23	1170	chr3:47422670:+	NDUFA6	16620	chr22:42483179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23,NDUFA6->NADH:ubiquinone_oxidoreductase_subunit_A6,chr22:42481529-42486959:-	HCC1195_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	TYMS--SEPT9	3	0	TYMS	4286	chr18:662320:+	SEPT9	45878	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	{Klijn_CCL:Lung=1,Urinary_Bladder=1},TYMS->chr18:657604-673578:+,thymidylate_synthetase,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	HCC1195_LUNG	1	1	0.0245	TRUE	0	9	0	5	1	TRUE	ACH-000868
HCC1195_LUNG	CYP24A1--FAM84B	2	0	CYP24A1	10936	chr20:52773708:-	FAM84B	21312	chr8:127565748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,FAM84B->chr8:127564687-127570638:-,family_with_sequence_similarity_84_member_B	HCC1195_LUNG	1	1	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	LINC00882--CSDE1	2	0	LINC00882	2304	chr3:106848735:-	CSDE1	21424	chr1:115292828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	LINC00882->chr3:106555658-106959488:-,long_intergenic_non-protein_coding_RNA_882,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	HCC1195_LUNG	1	1	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	LPIN2--MYL12B	2	0	LPIN2	1229	chr18:3013085:-	MYL12B	32733	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	LPIN2->chr18:2916992-3013313:-,lipin_2,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	HCC1195_LUNG	1	1	0.0164	TRUE	0	1	0	4	0	TRUE	ACH-000868
HCC1195_LUNG	PSEN1--NUMB	2	0	PSEN1	12660	chr14:73640415:+	NUMB	45217	chr14:73763993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	LOCAL_INVERSION:+:-:[51416],PSEN1->chr14:73603126-73690399:+,presenilin_1,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	HCC1195_LUNG	1	1	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	RBM22--CCDC162P	2	0	RBM22	1664	chr5:150080006:-	CCDC162P	30485	chr6:109659651:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	RBM22->RNA_binding_motif_protein_22,chr5:150070356-150080669:-,CCDC162P->chr6:109612231-109676266:+,coiled-coil_domain_containing_162,_pseudogene	HCC1195_LUNG	1	1	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	SCAF11--PTPRD	2	0	SCAF11	2468	chr12:46384136:-	PTPRD	42946	chr9:9018735:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	HCC1195_LUNG	1	1	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	SHROOM3--CCNI	2	0	SHROOM3	6004	chr4:77507622:+	CCNI	34951	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	GTEx&tcga_normals:1/3694=0.03%,SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,CCNI->chr4:77968311-77997158:-,cyclin_I	HCC1195_LUNG	1	1	0.0164	TRUE	0	1	0	3	0	TRUE	ACH-000868
HCC1195_LUNG	NEDD1--DZIP1	1	1	NEDD1	15803	chr12:97339627:+	DZIP1	30214	chr13:96277183:-	ONLY_REF_SPLICE	YES	47	6	0.04	0.25	0.0082	0.0082	NEDD1->chr12:97301001-97347129:+,neural_precursor_cell_expressed,_developmentally_down-regulated_1,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	HCC1195_LUNG	0.04	0.25	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	SCAF11--PTPRD	1	1	SCAF11	7253	chr12:46355483:-	PTPRD	42946	chr9:9018735:-	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.0082	0.0082	SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	HCC1195_LUNG	0.05	1	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
NCIH1793_LUNG	PEX14--PGD	426	27	PEX14	3457	chr1:10555378:+	PGD	27427	chr1:10477433:+	ONLY_REF_SPLICE	YES	6	1084	0.99	0.29	3.8034	0.2411	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[52144],PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14,PGD->chr1:10458649-10480201:+,phosphogluconate_dehydrogenase	NCIH1793_LUNG	0.29	0.99	4.0445	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	NFAT5--RP11-343C2.11	259	57	NFAT5	2281	chr16:69600277:+	RP11-343C2.11	35524	chr16:69350128:+	ONLY_REF_SPLICE	YES	11	44	0.97	0.88	2.3124	0.5089	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,RP11-343C2.11->chr16:69333585-69354614:+	NCIH1793_LUNG	0.88	0.97	2.8213	TRUE	0	1	0	1	1	TRUE	ACH-000888
NCIH1793_LUNG	ZNF486--RFXANK	205	61	ZNF486	5875	chr19:20307913:+	RFXANK	15200	chr19:19307775:+	INCL_NON_REF_SPLICE	YES	1	157	1	0.63	1.8303	0.5446	ZNF486->chr19:20278037-20311299:+,zinc_finger_protein_486,RFXANK->chr19:19303008-19312678:+,regulatory_factor_X_associated_ankyrin_containing_protein	NCIH1793_LUNG	0.63	1	2.3749	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	RUNX1--CTD-2021H9.3	172	35	RUNX1	27252	chr21:36252854:-	CTD-2021H9.3	46954	chr12:71441459:-	ONLY_REF_SPLICE	YES	9	0	0.96	1	1.5357	0.3125	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,CTD-2021H9.3->chr12:71441182-71512027:-	NCIH1793_LUNG	0.96	1	1.8482	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	NFAT5--RP11-343C2.11	97	79	NFAT5	3335	chr16:69602451:+	RP11-343C2.11	35524	chr16:69350128:+	ONLY_REF_SPLICE	YES	11	44	0.94	0.8	0.866	0.7053	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,RP11-343C2.11->chr16:69333585-69354614:+	NCIH1793_LUNG	0.8	0.94	1.5713	TRUE	0	1	0	1	1	TRUE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	93	73	TXNRD1	11664	chr12:104682818:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	1625	0	0.09	1	0.8303	0.6518	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.09	1	1.4821	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	WWOX--NUDT7	92	17	WWOX	22276	chr16:78458952:+	NUDT7	33991	chr16:77759328:+	ONLY_REF_SPLICE	YES	13	12	0.89	0.9	0.8214	0.1518	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,NUDT7->chr16:77756411-77776157:+,nudix_hydrolase_7	NCIH1793_LUNG	0.89	0.9	0.9732	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	RUNX1--CTD-2021H9.2	81	19	RUNX1	27252	chr21:36252854:-	CTD-2021H9.2	47197	chr12:71440521:-	ONLY_REF_SPLICE	YES	9	0	0.92	1	0.7232	0.1696	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,CTD-2021H9.2->chr12:71427902-71498306:-	NCIH1793_LUNG	0.92	1	0.8928	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	65	73	TXNRD1	11674	chr12:104682828:+	RP11-818F20.4	35626	chr12:104565555:+	INCL_NON_REF_SPLICE	YES	2008	0	0.06	1	0.5803	0.6518	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.06	1	1.2321	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	52	56	TXNRD1	11665	chr12:104682819:+	RP11-818F20.4	35677	chr12:104565606:+	INCL_NON_REF_SPLICE	YES	1656	5	0.06	0.96	0.4643	0.5	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.06	0.96	0.9643	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	ZNF486--RFXANK	50	61	ZNF486	5875	chr19:20307913:+	RFXANK	15197	chr19:19307772:+	INCL_NON_REF_SPLICE	YES	1	162	0.99	0.41	0.4464	0.5446	ZNF486->chr19:20278037-20311299:+,zinc_finger_protein_486,RFXANK->chr19:19303008-19312678:+,regulatory_factor_X_associated_ankyrin_containing_protein	NCIH1793_LUNG	0.41	0.99	0.991	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	CABIN1--AP000351.9	40	16	CABIN1	29373	chr22:24494155:+	AP000351.9	52375	chr22:24368971:+	ONLY_REF_SPLICE	YES	48	0	0.54	1	0.3571	0.1429	LOCAL_REARRANGEMENT:+:[36760],CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+,AP000351.9->chr22:24366750-24370882:+	NCIH1793_LUNG	0.54	1	0.5	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	25	53	TXNRD1	11664	chr12:104682818:+	RP11-818F20.4	35682	chr12:104565611:+	INCL_NON_REF_SPLICE	YES	1625	6	0.05	0.93	0.2232	0.4732	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.05	0.93	0.6964	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	CHST11--TXNRD1	35	10	CHST11	2941	chr12:104851292:+	TXNRD1	16694	chr12:104645305:+	ONLY_REF_SPLICE	YES	12	0	0.79	1	0.3125	0.0893	{Klijn_CCL:Ovary=1},CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	NCIH1793_LUNG	0.79	1	0.4018	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	C12orf66--TMEM132B	31	7	C12orf66	3086	chr12:64609458:-	TMEM132B	16327	chr12:125900077:+	ONLY_REF_SPLICE	YES	15	11	0.72	0.78	0.2768	0.0625	{Klijn_CCL:Lung=1},C12orf66->chr12:64580096-64616076:-,chromosome_12_open_reading_frame_66,TMEM132B->chr12:125671382-126146917:+,transmembrane_protein_132B	NCIH1793_LUNG	0.72	0.78	0.3393	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	CHRNB1--TXNDC17	23	5	CHRNB1	4728	chr17:7352107:+	TXNDC17	13135	chr17:6545073:+	ONLY_REF_SPLICE	YES	10	486	0.74	0.05	0.2053	0.0446	CHRNB1->cholinergic_receptor_nicotinic_beta_1_subunit,chr17:7348380-7361026:+,TXNDC17->chr17:6544078-6547861:+,thioredoxin_domain_containing_17	NCIH1793_LUNG	0.05	0.74	0.2499	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	2	75	TXNRD1	12166	chr12:104683320:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	1977	0	0.04	1	0.0179	0.6696	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.04	1	0.6875	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	GMCL1--ANXA4	18	7	GMCL1	1511	chr2:70057284:+	ANXA4	27484	chr2:70008652:+	ONLY_REF_SPLICE	YES	26	28	0.49	0.47	0.1607	0.0625	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[3178],GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,ANXA4->annexin_A4,chr2:69871557-70053596:+	NCIH1793_LUNG	0.47	0.49	0.2232	TRUE	0	2	0	2	2	TRUE	ACH-000888
NCIH1793_LUNG	RUNX1--CTD-2021H9.2	13	19	RUNX1	27252	chr21:36252854:-	CTD-2021H9.2	46115	chr12:71463139:-	ONLY_REF_SPLICE	YES	9	0	0.78	1	0.1161	0.1696	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,CTD-2021H9.2->chr12:71427902-71498306:-	NCIH1793_LUNG	0.78	1	0.2857	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	SCAMP4--CTB-31O20.8	14	8	SCAMP4	9564	chr19:1918989:+	CTB-31O20.8	20639	chr19:1861768:+	ONLY_REF_SPLICE	YES	190	6	0.1	0.79	0.125	0.0714	LOCAL_REARRANGEMENT:+:[43195],SCAMP4->Oncogene{Bushman},chr19:1905213-1926016:+,secretory_carrier_membrane_protein_4,CTB-31O20.8->chr19:1860249-1862018:+	NCIH1793_LUNG	0.1	0.79	0.1964	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	RUNX1--PTPRR	15	2	RUNX1	27252	chr21:36252854:-	PTPRR	46178	chr12:71286757:-	ONLY_REF_SPLICE	YES	9	1	0.65	0.94	0.1339	0.0179	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,PTPRR->chr12:71031853-71314623:-,protein_tyrosine_phosphatase,_receptor_type_R	NCIH1793_LUNG	0.65	0.94	0.1518	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	CHST11--TXNRD1	11	10	CHST11	2956	chr12:104851307:+	TXNRD1	16694	chr12:104645305:+	ONLY_REF_SPLICE	YES	14	0	0.6	1	0.0982	0.0893	{Klijn_CCL:Ovary=1},CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	NCIH1793_LUNG	0.6	1	0.1875	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	CSNK1G2--CTB-31O20.4	11	1	CSNK1G2	1230	chr19:1941417:+	CTB-31O20.4	17206	chr19:1823014:+	ONLY_REF_SPLICE	YES	0	3	1	0.8	0.0982	0.0089	CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,CTB-31O20.4->chr19:1822088-1824544:+	NCIH1793_LUNG	0.8	1	0.1071	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	ZNF486--RFXANK	7	12	ZNF486	3356	chr19:20296891:+	RFXANK	15200	chr19:19307775:+	ONLY_REF_SPLICE	YES	60	157	0.24	0.11	0.0625	0.1071	ZNF486->chr19:20278037-20311299:+,zinc_finger_protein_486,RFXANK->chr19:19303008-19312678:+,regulatory_factor_X_associated_ankyrin_containing_protein	NCIH1793_LUNG	0.11	0.24	0.1696	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	CWC27--NLN	8	2	CWC27	11915	chr5:64100213:+	NLN	28198	chr5:65073254:+	ONLY_REF_SPLICE	YES	20	48	0.33	0.17	0.0714	0.0179	CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+,NLN->chr5:65018023-65167553:+,neurolysin	NCIH1793_LUNG	0.17	0.33	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	RUNX1--CTD-2021H9.2	3	19	RUNX1	27252	chr21:36252854:-	CTD-2021H9.2	46131	chr12:71463123:-	INCL_NON_REF_SPLICE	YES	9	0	0.71	1	0.0268	0.1696	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,CTD-2021H9.2->chr12:71427902-71498306:-	NCIH1793_LUNG	0.71	1	0.1964	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	SCAMP4--CTB-31O20.8	4	13	SCAMP4	9564	chr19:1918989:+	CTB-31O20.8	20344	chr19:1861473:+	ONLY_REF_SPLICE	YES	190	0	0.08	1	0.0357	0.1161	LOCAL_REARRANGEMENT:+:[43195],SCAMP4->Oncogene{Bushman},chr19:1905213-1926016:+,secretory_carrier_membrane_protein_4,CTB-31O20.8->chr19:1860249-1862018:+	NCIH1793_LUNG	0.08	1	0.1518	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	RUNX1--CTD-2021H9.2	5	8	RUNX1	27252	chr21:36252854:-	CTD-2021H9.2	48261	chr12:71428028:-	ONLY_REF_SPLICE	YES	9	0	0.59	1	0.0446	0.0714	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,CTD-2021H9.2->chr12:71427902-71498306:-	NCIH1793_LUNG	0.59	1	0.116	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	RUNX1--CTD-2021H9.2	2	19	RUNX1	27252	chr21:36252854:-	CTD-2021H9.2	45844	chr12:71463410:-	ONLY_REF_SPLICE	YES	9	0	0.7	1	0.0179	0.1696	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,CTD-2021H9.2->chr12:71427902-71498306:-	NCIH1793_LUNG	0.7	1	0.1875	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	KSR2--FBXO21	6	1	KSR2	4200	chr12:118293233:-	FBXO21	47851	chr12:117615446:-	ONLY_REF_SPLICE	YES	1	15	0.88	0.32	0.0536	0.0089	KSR2->chr12:117890817-118406788:-,kinase_suppressor_of_ras_2,FBXO21->F-box_protein_21,chr12:117581146-117628336:-	NCIH1793_LUNG	0.32	0.88	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	WWOX--NUDT7	5	3	WWOX	22276	chr16:78458952:+	NUDT7	37771	chr16:77775479:+	ONLY_REF_SPLICE	YES	13	68	0.38	0.11	0.0446	0.0268	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,NUDT7->chr16:77756411-77776157:+,nudix_hydrolase_7	NCIH1793_LUNG	0.11	0.38	0.0714	TRUE	0	1	0	1	1	TRUE	ACH-000888
NCIH1793_LUNG	ZNF486--RFXANK	2	12	ZNF486	3356	chr19:20296891:+	RFXANK	15197	chr19:19307772:+	ONLY_REF_SPLICE	YES	60	162	0.19	0.08	0.0179	0.1071	ZNF486->chr19:20278037-20311299:+,zinc_finger_protein_486,RFXANK->chr19:19303008-19312678:+,regulatory_factor_X_associated_ankyrin_containing_protein	NCIH1793_LUNG	0.08	0.19	0.125	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	PARPBP--TXNRD1	3	2	PARPBP	12645	chr12:102559661:+	TXNRD1	24498	chr12:104645305:+	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.0268	0.0179	PARPBP->PARP1_binding_protein,chr12:102513956-102591298:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	NCIH1793_LUNG	0.31	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	PARPBP--TXNRD1	2	2	PARPBP	15008	chr12:102572548:+	TXNRD1	24498	chr12:104645305:+	ONLY_REF_SPLICE	YES	13	0	0.24	1	0.0179	0.0179	PARPBP->PARP1_binding_protein,chr12:102513956-102591298:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	NCIH1793_LUNG	0.24	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	ADAMTS20--SSPN	2	1	ADAMTS20	20576	chr12:43826107:-	SSPN	52773	chr12:26440416:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0179	0.0089	ADAMTS20->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_20,chr12:43747669-43945724:-,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	NCIH1793_LUNG	0.75	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	AP2S1--GTF2IRD1	2	0	AP2S1	3015	chr19:47349250:-	GTF2IRD1	32219	chr7:73973191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	AP2S1->adaptor_related_protein_complex_2_sigma_1_subunit,chr19:47341393-47354249:-,GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+	NCIH1793_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	ARPC1B--CEBPZ	2	0	ARPC1B	1533	chr7:98972404:+	CEBPZ	28347	chr2:37439182:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,CEBPZ->CCAAT/enhancer_binding_protein_zeta,chr2:37428755-37458856:-	NCIH1793_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	NOVA1--NUP133	2	0	NOVA1	11457	chr14:26941526:-	NUP133	29140	chr1:229634053:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NOVA1->NOVA_alternative_splicing_regulator_1,chr14:26912299-27066960:-,NUP133->Oncogene{Bushman},chr1:229577045-229644103:-,nucleoporin_133kDa	NCIH1793_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	NUFIP2--DLG1	2	0	NUFIP2	1336	chr17:27620801:-	DLG1	19916	chr3:197024106:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	NCIH1793_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	SYTL4--PLS3	1	1	SYTL4	1120	chrX:99986991:-	PLS3	24297	chrX:114844555:+	ONLY_REF_SPLICE	YES	7	3	0.22	0.4	0.0089	0.0089	SYTL4->chrX:99929488-99987110:-,synaptotagmin_like_4,PLS3->chrX:114795501-114885181:+,plastin_3	NCIH1793_LUNG	0.22	0.4	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000888
CAPAN1_PANCREAS	LAMA3--RP11-26N15.2	39	7	LAMA3	13844	chr18:21364121:+	RP11-26N15.2	84144	chr18:24924185:+	ONLY_REF_SPLICE	YES	5	0	0.9	1	0.4162	0.0747	LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,RP11-26N15.2->chr18:24923216-24926074:+	CAPAN1_PANCREAS	0.9	1	0.4909	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	ZC3H13--FAM96A	33	23	ZC3H13	4502	chr13:46616299:-	FAM96A	35678	chr15:64373350:-	ONLY_REF_SPLICE	YES	10	220	0.85	0.2	0.3522	0.2455	{Klijn_CCL:Pancreas=1},ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A	CAPAN1_PANCREAS	0.2	0.85	0.5977	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	IGF1R--LRRC28	23	8	IGF1R	3251	chr15:99251336:+	LRRC28	55309	chr15:99874128:+	ONLY_REF_SPLICE	YES	9	11	0.78	0.74	0.2455	0.0854	GTEx&tcga_normals:1/3694=0.03%,IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28	CAPAN1_PANCREAS	0.74	0.78	0.3309	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	ZC3H13--FAM96A	19	14	ZC3H13	4502	chr13:46616299:-	FAM96A	36728	chr15:64367736:-	ONLY_REF_SPLICE	YES	10	203	0.77	0.14	0.2028	0.1494	{Klijn_CCL:Pancreas=1},ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A	CAPAN1_PANCREAS	0.14	0.77	0.3522	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	IGF1R--LRRC28	19	3	IGF1R	3251	chr15:99251336:+	LRRC28	56517	chr15:99892574:+	ONLY_REF_SPLICE	YES	9	17	0.71	0.56	0.2028	0.032	GTEx&tcga_normals:1/3694=0.03%,IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28	CAPAN1_PANCREAS	0.56	0.71	0.2348	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	AKAP8--SPIRE1	17	7	AKAP8	9441	chr19:15479046:-	SPIRE1	26024	chr18:12546903:-	ONLY_REF_SPLICE	YES	42	5	0.36	0.83	0.1814	0.0747	AKAP8->A-kinase_anchoring_protein_8,chr19:15464196-15490609:-,SPIRE1->chr18:12446511-12658133:-,spire_type_actin_nucleation_factor_1	CAPAN1_PANCREAS	0.36	0.83	0.2561	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	HELLS--ZKSCAN5	15	9	HELLS	12193	chr10:96336562:+	ZKSCAN5	36717	chr7:99110076:+	ONLY_REF_SPLICE	YES	10	18	0.71	0.57	0.1601	0.0961	HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,ZKSCAN5->chr7:99102274-99132323:+,zinc_finger_with_KRAB_and_SCAN_domains_5	CAPAN1_PANCREAS	0.57	0.71	0.2562	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	UBP1--RP11-423O2.7	16	2	UBP1	2636	chr3:33481228:-	RP11-423O2.7	26274	chr1:142952672:-	ONLY_REF_SPLICE	YES	31	0	0.37	1	0.1708	0.0213	UBP1->chr3:33429828-33482863:-,upstream_binding_protein_1_(LBP-1a),RP11-423O2.7->chr1:142950985-142956716:-	CAPAN1_PANCREAS	0.37	1	0.1921	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	PSMD1--SPATA3	15	5	PSMD1	21281	chr2:232018380:+	SPATA3	33970	chr2:231865081:+	ONLY_REF_SPLICE	YES	174	0	0.1	1	0.1601	0.0534	LOCAL_REARRANGEMENT:+:[31808],PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1,SPATA3->chr2:231860836-231889770:+,spermatogenesis_associated_3	CAPAN1_PANCREAS	0.1	1	0.2135	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	PRKCE--SNX17	12	5	PRKCE	2104	chr2:45879587:+	SNX17	42975	chr2:27594136:+	ONLY_REF_SPLICE	YES	6	224	0.74	0.07	0.1281	0.0534	{Klijn_CCL:Pancreas=1},PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,SNX17->chr2:27593389-27599995:+,sorting_nexin_17	CAPAN1_PANCREAS	0.07	0.74	0.1815	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	ZKSCAN5--HELLS	12	4	ZKSCAN5	2808	chr7:99104081:+	HELLS	30466	chr10:96347986:+	ONLY_REF_SPLICE	YES	16	22	0.5	0.42	0.1281	0.0427	{Klijn_CCL:Pancreas=1},ZKSCAN5->chr7:99102274-99132323:+,zinc_finger_with_KRAB_and_SCAN_domains_5,HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific	CAPAN1_PANCREAS	0.42	0.5	0.1708	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	ZKSCAN5--HELLS	11	5	ZKSCAN5	2808	chr7:99104081:+	HELLS	27106	chr10:96341083:+	ONLY_REF_SPLICE	YES	16	13	0.5	0.55	0.1174	0.0534	{Klijn_CCL:Pancreas=1},ZKSCAN5->chr7:99102274-99132323:+,zinc_finger_with_KRAB_and_SCAN_domains_5,HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific	CAPAN1_PANCREAS	0.5	0.55	0.1708	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	ZFAND4--MEGF11	9	3	ZFAND4	2832	chr10:46158990:-	MEGF11	23076	chr15:66420749:-	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.0961	0.032	ZFAND4->chr10:46111043-46168228:-,zinc_finger_AN1-type_containing_4,MEGF11->chr15:66187417-66546085:-,multiple_EGF_like_domains_11	CAPAN1_PANCREAS	0.75	1	0.1281	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	CCAT1--CASC8	7	5	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	17	0	0.41	1	0.0747	0.0534	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	CAPAN1_PANCREAS	0.41	1	0.1281	TRUE	0	7	0	14	6	TRUE	ACH-000354
CAPAN1_PANCREAS	HELLS--ZKSCAN5	6	6	HELLS	12097	chr10:96336466:+	ZKSCAN5	36717	chr7:99110076:+	ONLY_REF_SPLICE	YES	16	18	0.43	0.4	0.064	0.064	HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,ZKSCAN5->chr7:99102274-99132323:+,zinc_finger_with_KRAB_and_SCAN_domains_5	CAPAN1_PANCREAS	0.4	0.43	0.128	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	SIN3A--IL21	7	1	SIN3A	28470	chr15:75681993:-	IL21	40858	chr4:123541891:-	ONLY_REF_SPLICE	YES	56	2	0.12	0.8	0.0747	0.0107	SIN3A->SIN3_transcription_regulator_family_member_A,chr15:75661720-75748183:-,IL21->chr4:123533783-123542224:-,interleukin_21	CAPAN1_PANCREAS	0.12	0.8	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	CEP350--RP11-138E16.1	5	1	CEP350	32050	chr1:180034407:+	RP11-138E16.1	56661	chr15:49238149:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0534	0.0107	CEP350->centrosomal_protein_350,chr1:179923873-180084015:+,RP11-138E16.1->chr15:49230433-49240228:+	CAPAN1_PANCREAS	0.86	0.86	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	LAMA3--RP11-612A1.1	5	1	LAMA3	13844	chr18:21364121:+	RP11-612A1.1	84209	chr18:24981464:+	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0534	0.0107	LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,RP11-612A1.1->chr18:24977916-24981868:+	CAPAN1_PANCREAS	0.55	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	CCAT1--CASC8	4	2	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	17	1	0.26	0.86	0.0427	0.0213	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	CAPAN1_PANCREAS	0.26	0.86	0.064	TRUE	0	26	0	18	24	TRUE	ACH-000354
CAPAN1_PANCREAS	DEPTOR--GDPD1	3	2	DEPTOR	4734	chr8:120977650:+	GDPD1	16908	chr17:57311853:+	ONLY_REF_SPLICE	YES	2	4	0.71	0.56	0.032	0.0213	DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+,GDPD1->chr17:57297828-57353328:+,glycerophosphodiester_phosphodiesterase_domain_containing_1	CAPAN1_PANCREAS	0.56	0.71	0.0533	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	AKAP1--TBC1D31	3	1	AKAP1	19924	chr17:55198671:+	TBC1D31	47987	chr8:124153001:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.31	0.032	0.0107	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+	CAPAN1_PANCREAS	0.31	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	ZFAND4--MEGF11	3	1	ZFAND4	2832	chr10:46158990:-	MEGF11	25284	chr15:66411524:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.032	0.0107	ZFAND4->chr10:46111043-46168228:-,zinc_finger_AN1-type_containing_4,MEGF11->chr15:66187417-66546085:-,multiple_EGF_like_domains_11	CAPAN1_PANCREAS	0.5	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	AKAP1--TBC1D31	2	0	AKAP1	17863	chr17:55196405:+	TBC1D31	46894	chr8:124146354:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+	CAPAN1_PANCREAS	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	GUK1--LIN9	2	0	GUK1	1402	chr1:228328064:+	LIN9	24342	chr1:226426797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GUK1->chr1:228327663-228336685:+,guanylate_kinase_1,LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component	CAPAN1_PANCREAS	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	RP11-255B23.4--CASC8	2	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	13502	chr8:128335399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	CAPAN1_PANCREAS	1	1	0.0213	TRUE	0	0	0	3	0	TRUE	ACH-000354
CAPAN1_PANCREAS	SLC25A44--VPS72	2	0	SLC25A44	1159	chr1:156164038:+	VPS72	16365	chr1:151158426:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,VPS72->chr1:151142463-151167797:-,vacuolar_protein_sorting_72_homolog	CAPAN1_PANCREAS	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	ZC3H13--FAM96A	2	0	ZC3H13	1062	chr13:46626833:-	FAM96A	35678	chr15:64373350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	{Klijn_CCL:Pancreas=1},ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A	CAPAN1_PANCREAS	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	ZKSCAN5--HELLS	1	4	ZKSCAN5	2808	chr7:99104081:+	HELLS	28303	chr10:96342720:+	ONLY_REF_SPLICE	YES	16	16	0.24	0.24	0.0107	0.0427	{Klijn_CCL:Pancreas=1},ZKSCAN5->chr7:99102274-99132323:+,zinc_finger_with_KRAB_and_SCAN_domains_5,HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific	CAPAN1_PANCREAS	0.24	0.24	0.0534	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	CEP350--RP11-138E16.1	1	2	CEP350	32050	chr1:180034407:+	RP11-138E16.1	55524	chr15:49230433:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0107	0.0213	CEP350->centrosomal_protein_350,chr1:179923873-180084015:+,RP11-138E16.1->chr15:49230433-49240228:+	CAPAN1_PANCREAS	0.75	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	IGF1R--LRRC28	1	2	IGF1R	3251	chr15:99251336:+	LRRC28	65400	chr15:99926235:+	ONLY_REF_SPLICE	NO	9	9	0.25	0.25	0.0107	0.0213	GTEx&tcga_normals:1/3694=0.03%,IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28	CAPAN1_PANCREAS	0.25	0.25	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000354
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	70	31	KMT2A	16644	chr11:118353210:+	AFF1	62543	chr4:88005272:+	ONLY_REF_SPLICE	YES	10	65	0.91	0.61	0.9142	0.4049	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.91	1.3191	TRUE	0	0	0	2	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFF1--KMT2A	32	19	AFF1	8490	chr4:87968746:+	KMT2A	52489	chr11:118355577:+	ONLY_REF_SPLICE	YES	57	16	0.47	0.76	0.4179	0.2481	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.76	0.666	TRUE	0	0	0	2	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	24	0	PTMA	6054	chr2:232576687:+	ANP32B	17703	chr9:100773556:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3134	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3134	TRUE	0	0	0	4	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFF1--KMT2A	21	9	AFF1	8490	chr4:87968746:+	KMT2A	53603	chr11:118359329:+	ONLY_REF_SPLICE	YES	57	8	0.34	0.79	0.2743	0.1175	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.79	0.3918	TRUE	0	0	0	1	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	12	30	KMT2A	16644	chr11:118353210:+	AFF1	62546	chr4:88005275:+	ONLY_REF_SPLICE	YES	10	64	0.81	0.4	0.1567	0.3918	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.81	0.5485	TRUE	0	0	0	2	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	13	0	PTMA	6060	chr2:232576693:+	ANP32B	17709	chr9:100773562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1698	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1698	TRUE	0	0	0	4	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	3	11	KMT2A	16241	chr11:118352807:+	AFF1	62543	chr4:88005272:+	ONLY_REF_SPLICE	YES	10	65	0.58	0.18	0.0392	0.1437	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.58	0.1829	TRUE	0	0	0	2	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	1	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	31	1	0.11	0.8	0.0392	0.0131	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.8	0.0523	TRUE	0	2	0	11	2	TRUE	ACH-000782
LNZ308_CENTRAL_NERVOUS_SYSTEM	PTCH1--AAED1	547	495	PTCH1	1589	chr9:98278751:-	AAED1	41353	chr9:99417055:-	ONLY_REF_SPLICE	YES	206	17	0.83	0.98	7.175	6.4929	PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.83	0.98	13.6679	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PIP4K2C--RP11-210N13.1	209	170	PIP4K2C	2388	chr12:57987905:+	RP11-210N13.1	15162	chr12:44132149:+	ONLY_REF_SPLICE	YES	1530	2	0.2	0.99	2.7415	2.2299	PIP4K2C->chr12:57984957-57997198:+,phosphatidylinositol-5-phosphate_4-kinase_type_2_gamma,RP11-210N13.1->chr12:44130431-44134870:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.2	0.99	4.9714	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MYH9--TXN2	79	349	MYH9	1212	chr22:36783852:-	TXN2	45787	chr22:36876884:-	ONLY_REF_SPLICE	YES	1315	64	0.25	0.87	1.0362	4.5778	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[79020],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,TXN2->chr22:36863083-36878077:-,thioredoxin_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.25	0.87	5.614	TRUE	0	2	0	1	2	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PTCH1--AAED1	54	361	PTCH1	1589	chr9:98278751:-	AAED1	42422	chr9:99413994:-	ONLY_REF_SPLICE	YES	206	34	0.67	0.92	0.7083	4.7353	PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.67	0.92	5.4436	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	EPS8--TMEM52B	108	143	EPS8	3576	chr12:15942095:-	TMEM52B	40719	chr12:10335149:+	ONLY_REF_SPLICE	YES	198	0	0.56	1	1.4166	1.8757	EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,TMEM52B->chr12:10323141-10344400:+,transmembrane_protein_52B	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.56	1	3.2923	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MRPL21--MYEOV	114	77	MRPL21	6294	chr11:68660358:-	MYEOV	18385	chr11:69156278:+	ONLY_REF_SPLICE	YES	44	71	0.81	0.73	1.4953	1.01	MRPL21->chr11:68658744-68671303:-,mitochondrial_ribosomal_protein_L21,MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.73	0.81	2.5053	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	EHD1--ORAOV1	104	99	EHD1	6099	chr11:64641893:-	ORAOV1	18762	chr11:69488089:-	ONLY_REF_SPLICE	YES	716	411	0.22	0.33	1.3642	1.2986	EHD1->EH_domain_containing_1,chr11:64619114-64655768:-,ORAOV1->Oncogene{Bushman},chr11:69467844-69490184:-,oral_cancer_overexpressed_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.22	0.33	2.6628	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	ADAMTS20--OS9	105	56	ADAMTS20	20576	chr12:43826107:-	OS9	44731	chr12:58109543:+	ONLY_REF_SPLICE	YES	0	138	1	0.54	1.3773	0.7346	ADAMTS20->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_20,chr12:43747669-43945724:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.54	1	2.1119	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MYH9--FOXRED2	101	27	MYH9	1212	chr22:36783852:-	FOXRED2	53456	chr22:36886314:-	ONLY_REF_SPLICE	YES	1315	15	0.09	0.9	1.3248	0.3542	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[99174],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,FOXRED2->FAD_dependent_oxidoreductase_domain_containing_2,chr22:36883237-36903148:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.09	0.9	1.679	TRUE	0	1	0	1	1	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PTCH1--AAED1	57	148	PTCH1	1435	chr9:98278905:-	AAED1	41353	chr9:99417055:-	ONLY_REF_SPLICE	YES	204	17	0.5	0.92	0.7477	1.9413	PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.5	0.92	2.689	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MRPL21--MYEOV	63	104	MRPL21	6294	chr11:68660358:-	MYEOV	16216	chr11:69084301:+	INCL_NON_REF_SPLICE	YES	44	89	0.79	0.65	0.8264	1.3642	MRPL21->chr11:68658744-68671303:-,mitochondrial_ribosomal_protein_L21,MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.65	0.79	2.1906	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MYH9--TXN2	9	269	MYH9	1212	chr22:36783852:-	TXN2	45837	chr22:36876834:-	ONLY_REF_SPLICE	YES	1315	183	0.17	0.6	0.1181	3.5285	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[79020],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,TXN2->chr22:36863083-36878077:-,thioredoxin_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.17	0.6	3.6466	TRUE	0	2	0	1	2	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SNAPIN--SEC22B	56	55	SNAPIN	1913	chr1:153632042:+	SEC22B	10836	chr1:145109524:+	ONLY_REF_SPLICE	YES	237	795	0.32	0.12	0.7346	0.7214	SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.12	0.32	1.456	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	STX8--RP1-269M15.3	49	74	STX8	8513	chr17:9448489:-	RP1-269M15.3	21112	chr20:41829236:+	ONLY_REF_SPLICE	YES	136	0	0.47	1	0.6427	0.9707	STX8->chr17:9153788-9479908:-,syntaxin_8,RP1-269M15.3->chr20:41818862-41830011:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.47	1	1.6134	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PTCH1--AAED1	8	225	PTCH1	1589	chr9:98278751:-	AAED1	42639	chr9:99413777:-	ONLY_REF_SPLICE	YES	206	137	0.53	0.63	0.1049	2.9513	PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.53	0.63	3.0562	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PIP4K2C--RP11-210N13.1	17	185	PIP4K2C	2388	chr12:57987905:+	RP11-210N13.1	14806	chr12:44131793:+	ONLY_REF_SPLICE	YES	1530	0	0.12	1	0.223	2.4267	PIP4K2C->chr12:57984957-57997198:+,phosphatidylinositol-5-phosphate_4-kinase_type_2_gamma,RP11-210N13.1->chr12:44130431-44134870:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.12	1	2.6497	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SUCO--DNM3	45	68	SUCO	2149	chr1:172502637:+	DNM3	51259	chr1:172277868:+	ONLY_REF_SPLICE	YES	34	12	0.77	0.9	0.5903	0.892	SUCO->SUN_domain_containing_ossification_factor,chr1:172501489-172580971:+,DNM3->chr1:171810621-172387606:+,dynamin_3	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.77	0.9	1.4823	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MYH9--TXN2	1	207	MYH9	1212	chr22:36783852:-	TXN2	45876	chr22:36876795:-	ONLY_REF_SPLICE	NO	1315	501	0.14	0.29	0.0131	2.7152	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[79020],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,TXN2->chr22:36863083-36878077:-,thioredoxin_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.14	0.29	2.7283	TRUE	0	2	0	1	2	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SMARCA5--ADAMTS20	45	26	SMARCA5	19705	chr4:144468656:+	ADAMTS20	44179	chr12:43840515:-	ONLY_REF_SPLICE	YES	340	47	0.17	0.6	0.5903	0.341	SMARCA5->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_5,chr4:144434616-144478639:+,ADAMTS20->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_20,chr12:43747669-43945724:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.17	0.6	0.9313	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RPRD2--ARHGAP9	28	38	RPRD2	2578	chr1:150337395:+	ARHGAP9	26305	chr12:57874617:-	ONLY_REF_SPLICE	YES	83	62	0.44	0.52	0.3673	0.4984	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.44	0.52	0.8657	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	EPS8--TMEM52B	7	116	EPS8	3576	chr12:15942095:-	TMEM52B	41763	chr12:10337929:+	ONLY_REF_SPLICE	YES	198	0	0.38	1	0.0918	1.5216	EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,TMEM52B->chr12:10323141-10344400:+,transmembrane_protein_52B	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.38	1	1.6134	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PTCH1--AAED1	10	103	PTCH1	1435	chr9:98278905:-	AAED1	42422	chr9:99413994:-	ONLY_REF_SPLICE	YES	204	34	0.36	0.77	0.1312	1.3511	PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.36	0.77	1.4823	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MED19--GLYATL1P2	25	29	MED19	1259	chr11:57479435:-	GLYATL1P2	7856	chr11:58652379:+	ONLY_REF_SPLICE	YES	54	0	0.5	1	0.3279	0.3804	MED19->chr11:57471186-57479693:-,mediator_complex_subunit_19,GLYATL1P2->chr11:58645775-58660933:+,glycine-N-acyltransferase_like_1_pseudogene_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.7083	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	IGHMBP2--METTL21B	25	14	IGHMBP2	5164	chr11:68679071:+	METTL21B	24580	chr12:58166800:+	ONLY_REF_SPLICE	YES	13	323	0.75	0.11	0.3279	0.1836	IGHMBP2->chr11:68671310-68708070:+,immunoglobulin_mu_binding_protein_2,METTL21B->chr12:58165275-58176324:+,methyltransferase_like_21B	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.11	0.75	0.5115	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	EPS8--TMEM52B	3	97	EPS8	3576	chr12:15942095:-	TMEM52B	42825	chr12:10339019:+	ONLY_REF_SPLICE	YES	198	4	0.34	0.96	0.0394	1.2724	EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,TMEM52B->chr12:10323141-10344400:+,transmembrane_protein_52B	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.34	0.96	1.3118	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PIP4K2C--RP11-210N13.1	2	101	PIP4K2C	1290	chr12:57985246:+	RP11-210N13.1	15162	chr12:44132149:+	ONLY_REF_SPLICE	YES	1482	2	0.06	0.98	0.0262	1.3248	PIP4K2C->chr12:57984957-57997198:+,phosphatidylinositol-5-phosphate_4-kinase_type_2_gamma,RP11-210N13.1->chr12:44130431-44134870:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.06	0.98	1.351	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	TSFM--RP11-554A11.8	4	71	TSFM	9048	chr12:58191316:+	RP11-554A11.8	17471	chr11:68915208:-	INCL_NON_REF_SPLICE	YES	34	0	0.69	1	0.0525	0.9313	TSFM->Ts_translation_elongation_factor,_mitochondrial,chr12:58176372-58201854:+,RP11-554A11.8->chr11:68914696-68939032:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.69	1	0.9838	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	VPS45--MRGPRF	16	20	VPS45	5608	chr1:150049309:+	MRGPRF	22570	chr11:68777425:-	ONLY_REF_SPLICE	YES	288	0	0.11	1	0.2099	0.2623	VPS45->chr1:150039369-150117505:+,vacuolar_protein_sorting_45_homolog,MRGPRF->MAS_related_GPR_family_member_F,chr11:68771863-68780877:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.4722	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	OS9--AVIL	16	12	OS9	7771	chr12:58112965:+	AVIL	24667	chr12:58197174:-	ONLY_REF_SPLICE	YES	440	127	0.06	0.18	0.2099	0.1574	LOCAL_INVERSION:+:-:[75819],OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin,AVIL->advillin,chr12:58191159-58212487:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.06	0.18	0.3673	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-25I15.2--MUC19	17	5	RP11-25I15.2	3913	chr12:43064295:+	MUC19	71192	chr12:40924075:+	ONLY_REF_SPLICE	YES	0	7	1	0.76	0.223	0.0656	RP11-25I15.2->chr12:43040385-43080503:+,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.76	1	0.2886	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RPRD2--ARHGAP9	11	29	RPRD2	2578	chr1:150337395:+	ARHGAP9	27351	chr12:57873571:-	ONLY_REF_SPLICE	YES	83	70	0.33	0.36	0.1443	0.3804	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.33	0.36	0.5247	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	ADAMTS20--OS9	4	56	ADAMTS20	21422	chr12:43825261:-	OS9	44731	chr12:58109543:+	INCL_NON_REF_SPLICE	YES	0	138	1	0.3	0.0525	0.7346	ADAMTS20->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_20,chr12:43747669-43945724:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.7871	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PHF20--STX8	11	20	PHF20	19614	chr20:34487570:+	STX8	44519	chr17:9408479:-	ONLY_REF_SPLICE	YES	20	130	0.61	0.19	0.1443	0.2623	PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,STX8->chr17:9153788-9479908:-,syntaxin_8	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.19	0.61	0.4066	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SMARCA4--CARM1	15	4	SMARCA4	18944	chr19:11121207:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	249	93	0.07	0.17	0.1968	0.0525	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.07	0.17	0.2493	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PTCH1--AAED1	1	58	PTCH1	1589	chr9:98278751:-	AAED1	44877	chr9:99404168:-	ONLY_REF_SPLICE	NO	206	347	0.22	0.15	0.0131	0.7608	PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.15	0.22	0.7739	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PRMT3--FAM19A2	11	7	PRMT3	18100	chr11:20515800:+	FAM19A2	43995	chr12:62417560:-	ONLY_REF_SPLICE	YES	141	0	0.11	1	0.1443	0.0918	PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.2361	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MED19--GLYATL1P2	4	29	MED19	1259	chr11:57479435:-	GLYATL1P2	6732	chr11:58645731:+	INCL_NON_REF_SPLICE	YES	54	0	0.38	1	0.0525	0.3804	MED19->chr11:57471186-57479693:-,mediator_complex_subunit_19,GLYATL1P2->chr11:58645775-58660933:+,glycine-N-acyltransferase_like_1_pseudogene_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.4329	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-312O7.2--ARHGAP9	9	7	RP11-312O7.2	2914	chr1:206135293:-	ARHGAP9	8257	chr12:57874617:-	ONLY_REF_SPLICE	YES	0	62	1	0.21	0.1181	0.0918	RP11-312O7.2->chr1:206135293-206137984:-,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.21	1	0.2099	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NCOA1--FAM228A	8	5	NCOA1	11791	chr2:24905997:+	FAM228A	37117	chr2:24398336:+	ONLY_REF_SPLICE	YES	28	0	0.32	1	0.1049	0.0656	NCOA1->Oncogene{Bushman},chr2:24714783-24993571:+,nuclear_receptor_coactivator_1,FAM228A->chr2:24397938-24423718:+,family_with_sequence_similarity_228_member_A	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.32	1	0.1705	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RPRD2--ARHGAP9	3	23	RPRD2	2578	chr1:150337395:+	ARHGAP9	27715	chr12:57873207:-	ONLY_REF_SPLICE	YES	83	93	0.24	0.22	0.0394	0.3017	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.22	0.24	0.3411	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PHF20--STX8	6	10	PHF20	19614	chr20:34487570:+	STX8	45644	chr17:9395238:-	ONLY_REF_SPLICE	YES	20	111	0.44	0.13	0.0787	0.1312	PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,STX8->chr17:9153788-9479908:-,syntaxin_8	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.13	0.44	0.2099	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	OS9--AVIL	5	12	OS9	7771	chr12:58112965:+	AVIL	24389	chr12:58197452:-	ONLY_REF_SPLICE	YES	440	73	0.04	0.19	0.0656	0.1574	LOCAL_INVERSION:+:-:[75819],OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin,AVIL->advillin,chr12:58191159-58212487:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.04	0.19	0.223	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MYH9--TXN2	2	21	MYH9	1212	chr22:36783852:-	TXN2	48974	chr22:36863964:-	ONLY_REF_SPLICE	YES	1315	819	0.02	0.03	0.0262	0.2755	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[79020],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,TXN2->chr22:36863083-36878077:-,thioredoxin_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.3017	TRUE	0	5	0	1	2	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RPRD2--ARHGAP9	3	12	RPRD2	2578	chr1:150337395:+	ARHGAP9	27848	chr12:57873074:-	INCL_NON_REF_SPLICE	YES	83	98	0.15	0.13	0.0394	0.1574	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.13	0.15	0.1968	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	CELF1--RP11-94P11.4	2	13	CELF1	3345	chr11:47574544:-	RP11-94P11.4	32741	chr11:105139038:-	ONLY_REF_SPLICE	YES	97	0	0.13	1	0.0262	0.1705	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,RP11-94P11.4->chr11:105028654-105402424:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.13	1	0.1967	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NAV2--AP000439.2	4	5	NAV2	15791	chr11:19961319:+	AP000439.2	60691	chr11:69253621:-	ONLY_REF_SPLICE	YES	17	0	0.35	1	0.0525	0.0656	NAV2->chr11:19372271-20143144:+,neuron_navigator_2,AP000439.2->chr11:69253133-69259511:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NCOA1--FAM228A	4	4	NCOA1	11791	chr2:24905997:+	FAM228A	38224	chr2:24400671:+	ONLY_REF_SPLICE	YES	28	1	0.22	0.89	0.0525	0.0525	NCOA1->Oncogene{Bushman},chr2:24714783-24993571:+,nuclear_receptor_coactivator_1,FAM228A->chr2:24397938-24423718:+,family_with_sequence_similarity_228_member_A	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.22	0.89	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SYNPO--PPARGC1B	4	3	SYNPO	8929	chr5:150029865:+	PPARGC1B	26621	chr5:149206236:+	ONLY_REF_SPLICE	YES	111	1	0.06	0.88	0.0525	0.0394	SYNPO->chr5:149980642-150038782:+,synaptopodin,PPARGC1B->PPARG_coactivator_1_beta,chr5:149109861-149234585:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.06	0.88	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PDE3B--RP1-178F15.5	3	6	PDE3B	2331	chr11:14666599:+	RP1-178F15.5	36264	chr1:153599009:-	ONLY_REF_SPLICE	YES	23	91	0.28	0.09	0.0394	0.0787	PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B,RP1-178F15.5->chr1:153598808-153606816:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.09	0.28	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PLEKHG1--PPP1R14C	4	2	PLEKHG1	1155	chr6:150921153:+	PPP1R14C	31201	chr6:150569882:+	ONLY_REF_SPLICE	YES	1	39	0.86	0.13	0.0525	0.0262	PLEKHG1->chr6:150920999-151164799:+,pleckstrin_homology_and_RhoGEF_domain_containing_G1,PPP1R14C->chr6:150464212-150571493:+,protein_phosphatase_1_regulatory_inhibitor_subunit_14C	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.13	0.86	0.0787	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-312O7.2--ARHGAP9	3	5	RP11-312O7.2	2914	chr1:206135293:-	ARHGAP9	9667	chr12:57873207:-	ONLY_REF_SPLICE	YES	0	93	1	0.08	0.0394	0.0656	RP11-312O7.2->chr1:206135293-206137984:-,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PHF20--STX8	1	9	PHF20	18271	chr20:34459751:+	STX8	44519	chr17:9408479:-	ONLY_REF_SPLICE	NO	26	130	0.28	0.07	0.0131	0.1181	PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,STX8->chr17:9153788-9479908:-,syntaxin_8	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.07	0.28	0.1312	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	AHNAK--NDEL1	3	0	AHNAK	18072	chr11:62290286:-	NDEL1	49697	chr17:8370659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,NDEL1->chr17:8316449-8393729:+,nudE_neurodevelopment_protein_1_like_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PDE3B--RP1-178F15.5	1	8	PDE3B	2331	chr11:14666599:+	RP1-178F15.5	32330	chr1:153604716:-	ONLY_REF_SPLICE	YES	23	12	0.28	0.43	0.0131	0.1049	PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B,RP1-178F15.5->chr1:153598808-153606816:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.28	0.43	0.118	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PDE3B--RP1-178F15.5	1	6	PDE3B	2331	chr11:14666599:+	RP1-178F15.5	35199	chr1:153600074:-	ONLY_REF_SPLICE	YES	23	9	0.23	0.44	0.0131	0.0787	PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B,RP1-178F15.5->chr1:153598808-153606816:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.23	0.44	0.0918	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	CSTF2--PLS3	2	0	CSTF2	2211	chrX:100076594:+	PLS3	22158	chrX:114856558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CSTF2->chrX:100075384-100095921:+,cleavage_stimulation_factor_subunit_2,PLS3->chrX:114795501-114885181:+,plastin_3	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	DANCR--PMEPA1	2	0	DANCR	1530	chr4:53579126:+	PMEPA1	13788	chr20:56234753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,PMEPA1->Oncogene{Bushman},chr20:56223448-56286592:-,prostate_transmembrane_protein,_androgen_induced_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	DDX39A--ILF3	2	0	DDX39A	1111	chr19:14530082:-	ILF3	15594	chr19:10781192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	DDX39A->DEAD-box_helicase_39A,chr19:14519631-14530192:-,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	LGALS1--TXLNA	2	0	LGALS1	4047	chr22:38074661:+	TXLNA	16304	chr1:32659666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1,TXLNA->chr1:32645287-32663886:+,taxilin_alpha	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MAP4--ALDH7A1	2	0	MAP4	1507	chr3:48130263:-	ALDH7A1	53389	chr5:125896816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,ALDH7A1->aldehyde_dehydrogenase_7_family_member_A1,chr5:125877533-125931110:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NUPL2--PPP1CC	2	0	NUPL2	3987	chr7:23226765:+	PPP1CC	22447	chr12:111162569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	OSBPL10--ASAH1	2	0	OSBPL10	10820	chr3:31917925:-	ASAH1	43176	chr8:17928899:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10,ASAH1->N-acylsphingosine_amidohydrolase_(acid_ceramidase)_1,chr8:17913934-17942494:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SF1--ALG3	2	0	SF1	3289	chr11:64543970:-	ALG3	18031	chr3:183963600:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,ALG3->ALG3,_alpha-1,3-_mannosyltransferase,chr3:183960089-183967336:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SPIN3--TDRD3	2	0	SPIN3	1815	chrX:57021156:-	TDRD3	13560	chr13:61018817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	SPIN3->chrX:57002803-57021970:-,spindlin_family_member_3,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SPOP--MTHFD1L	2	0	SPOP	1302	chr17:47755295:-	MTHFD1L	48727	chr6:151330955:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SREBF2--VCL	2	0	SREBF2	1254	chr22:42229362:+	VCL	30646	chr10:75802841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	ST5--SNTG2	2	0	ST5	25185	chr11:8772168:-	SNTG2	76507	chr2:1312266:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	ST5->Oncogene{Bushman},chr11:8714898-8932498:-,suppression_of_tumorigenicity_5,SNTG2->chr2:946554-1371385:+,syntrophin_gamma_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	STK25--PTMA	2	0	STK25	2725	chr2:242447421:-	PTMA	21539	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	STK25->chr2:242432089-242449145:-,serine/threonine_kinase_25,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	2	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	TENM2--MMS22L	2	0	TENM2	3594	chr5:167001031:+	MMS22L	62345	chr6:97711324:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2,MMS22L->MMS22_like,_DNA_repair_protein,chr6:97590037-97731093:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	VAV2--NDST4	2	0	VAV2	1530	chr9:136857197:-	NDST4	43219	chr4:115898430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,NDST4->N-deacetylase/N-sulfotransferase_4,chr4:115748919-116035032:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	GLB1L3--NOL12	1	1	GLB1L3	4207	chr11:134147345:+	NOL12	46664	chr22:38147779:+	ONLY_REF_SPLICE	NO	0	2	1	0.5	0.0131	0.0131	GLB1L3->chr11:134144139-134189458:+,galactosidase_beta_1_like_3,NOL12->chr22:38077680-38170137:+,nucleolar_protein_12	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	GLB1L3--NOL12	1	1	GLB1L3	3519	chr11:134146657:+	NOL12	46664	chr22:38147779:+	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0131	0.0131	GLB1L3->chr11:134144139-134189458:+,galactosidase_beta_1_like_3,NOL12->chr22:38077680-38170137:+,nucleolar_protein_12	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.5	0.67	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	LIN54--TMEM150C	1	1	LIN54	1135	chr4:83933945:-	TMEM150C	26496	chr4:83425820:-	ONLY_REF_SPLICE	YES	7	2	0.22	0.5	0.0131	0.0131	LIN54->chr4:83831126-83934079:-,lin-54_DREAM_MuvB_core_complex_component,TMEM150C->chr4:83404323-83483510:-,transmembrane_protein_150C	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.22	0.5	0.0262	TRUE	0	1	0	1	1	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	VAV2--NDST4	1	1	VAV2	2729	chr9:136804225:-	NDST4	43219	chr4:115898430:-	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0131	0.0131	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,NDST4->N-deacetylase/N-sulfotransferase_4,chr4:115748919-116035032:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
T173_FIBROBLAST	COL4A1--COL6A1	63	0	COL4A1	20935	chr13:110838732:-	COL6A1	54417	chr21:47410715:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9005	0	HGNC_GENEFAM,PROTCLUST,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	T173_FIBROBLAST	1	1	0.9005	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	RPL41--MEDAG	4	0	RPL41	2202	chr12:56511571:+	MEDAG	5801	chr13:31480770:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0	RPL41->chr12:56510370-56511727:+,ribosomal_protein_L41,MEDAG->chr13:31480328-31499709:+,mesenteric_estrogen_dependent_adipogenesis	T173_FIBROBLAST	1	1	0.0572	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	HSPA5--MMP2	3	0	HSPA5	1566	chr9:128003044:-	MMP2	24353	chr16:55527112:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5,MMP2->Oncogene{Bushman},chr16:55423612-55540603:+,matrix_metallopeptidase_2	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	NSMF--CKAP4	3	0	NSMF	7599	chr9:140347188:-	CKAP4	21854	chr12:106632095:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	NSMF->NMDA_receptor_synaptonuclear_signaling_and_neuronal_migration_factor,chr9:140342022-140353786:-,CKAP4->chr12:106631655-106698057:-,cytoskeleton-associated_protein_4	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	PHTF2--HELLS	3	0	PHTF2	16763	chr7:77558644:+	HELLS	40042	chr10:96333717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	PTBP1--ZDHHC8	3	0	PTBP1	1431	chr19:797505:+	ZDHHC8	17689	chr22:20126717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0	PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1,ZDHHC8->chr22:20116979-20135530:+,zinc_finger_DHHC-type_containing_8	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	RP11-513I15.6--PDIA4	3	0	RP11-513I15.6	6048	chr6:34252503:+	PDIA4	12929	chr7:148718194:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	RP11-513I15.6->chr6:34247456-34254545:+,PDIA4->chr7:148700154-148725733:-,protein_disulfide_isomerase_family_A_member_4	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	SLIT3--KDELR2	3	0	SLIT3	48738	chr5:168090729:-	KDELR2	60959	chr7:6502313:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3,KDELR2->KDEL_endoplasmic_reticulum_protein_retention_receptor_2,chr7:6485584-6523873:-	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	TUBA1C--RGS4	3	0	TUBA1C	7646	chr12:49658967:+	RGS4	17746	chr1:163042185:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,RGS4->chr1:163038565-163046592:+,regulator_of_G-protein_signaling_4	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	AC027763.2--TRIP13	2	0	AC027763.2	2496	chr17:6913115:-	TRIP13	21772	chr5:907245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	AC027763.2->chr17:6779954-6915668:-,TRIP13->chr5:892758-919472:+,thyroid_hormone_receptor_interactor_13	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	C1orf63--NR2F6	2	0	C1orf63	13914	chr1:25571641:-	NR2F6	25198	chr19:17343435:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,NR2F6->Oncogene{Bushman},chr19:17342692-17356749:-,nuclear_receptor_subfamily_2_group_F_member_6	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	CD44--PDHX	2	0	CD44	6502	chr11:35211612:+	PDHX	42230	chr11:35013862:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	2	0	TRUE	ACH-000529
T173_FIBROBLAST	CLPTM1--SYNJ2	2	0	CLPTM1	6770	chr19:45480717:+	SYNJ2	50260	chr6:158516650:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	CLPTM1->chr19:45457842-45496599:+,cleft_lip_and_palate_associated_transmembrane_protein_1,SYNJ2->chr6:158402888-158520208:+,synaptojanin_2	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	COL6A3--KPNA1	2	0	COL6A3	2544	chr2:238305370:-	KPNA1	62602	chr3:122180165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	FUS--OGT	2	0	FUS	1118	chr16:31191548:+	OGT	32188	chrX:70783179:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+,OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	G2E3--CREB3L2	2	0	G2E3	1150	chr14:31028478:+	CREB3L2	43029	chr7:137570248:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+,CREB3L2->Oncogene{Bushman},cAMP_responsive_element_binding_protein_3-like_2,chr7:137559725-137686813:-	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	GAS6--TBL1XR1	2	0	GAS6	1499	chr13:114566548:-	TBL1XR1	22486	chr3:176878776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	KAT6B--ADK	2	0	KAT6B	5638	chr10:76603236:+	ADK	37695	chr10:76074425:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:2],KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B,ADK->adenosine_kinase,chr10:75910960-76469061:+	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	NT5C2--RP11-33B1.1	2	0	NT5C2	7615	chr10:104899163:-	RP11-33B1.1	45444	chr4:120464908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	NT5C2->5'-nucleotidase,_cytosolic_II,chr10:104845940-104953056:-,RP11-33B1.1->chr4:120375946-120473180:+	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	RANBP17--FAM208B	2	0	RANBP17	20644	chr5:170410249:+	FAM208B	54237	chr10:5754357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+,FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	RP11-1000B6.3--BTBD1	2	0	RP11-1000B6.3	1960	chr15:32829207:+	BTBD1	12341	chr15:83710677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	RP11-1000B6.3->chr15:32828248-32879814:+,BTBD1->BTB_domain_containing_1,chr15:83685174-83736106:-	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	TMEM143--CTC-273B12.7	2	0	TMEM143	4835	chr19:48848417:-	CTC-273B12.7	15038	chr19:48975582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	TMEM143->chr19:48835613-48867494:-,transmembrane_protein_143,CTC-273B12.7->chr19:48969094-48975688:+	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	TP53BP2--CAPN2	2	0	TP53BP2	1319	chr1:224033356:-	CAPN2	29060	chr1:223905464:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	LOCAL_INVERSION:-:+:[3881],TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2,CAPN2->calpain_2,chr1:223889295-223963720:+	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	TSC22D1--PTPRM	2	0	TSC22D1	4985	chr13:45147299:-	PTPRM	40148	chr18:8244056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	TSC22D1->TSC22_domain_family_member_1,chr13:45007655-45151283:-,PTPRM->chr18:7566780-8406859:+,protein_tyrosine_phosphatase,_receptor_type_M	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
253JBV_URINARY_TRACT	USP34--XPO1	112	10	USP34	1120	chr2:61697785:-	XPO1	85339	chr2:61729445:-	ONLY_REF_SPLICE	YES	10	164	0.92	0.43	1.3349	0.1192	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	253JBV_URINARY_TRACT	0.43	0.92	1.4541	TRUE	0	1	0	4	1	TRUE	ACH-000026
253JBV_URINARY_TRACT	MCU--RP11-344N10.2	55	12	MCU	9177	chr10:74594186:+	RP11-344N10.2	22137	chr10:74831065:+	INCL_NON_REF_SPLICE	YES	25	0	0.73	1	0.6555	0.143	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-344N10.2->chr10:74831053-74833766:+	253JBV_URINARY_TRACT	0.73	1	0.7985	TRUE	0	0	0	2	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	IMMP2L--DOCK4	50	2	IMMP2L	1667	chr7:111201907:-	DOCK4	48299	chr7:111462512:-	ONLY_REF_SPLICE	YES	8	35	0.87	0.6	0.5959	0.0238	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	253JBV_URINARY_TRACT	0.6	0.87	0.6197	TRUE	0	0	0	2	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	GPR126--VTA1	38	21	GPR126	10409	chr6:142714137:+	VTA1	40534	chr6:142510563:+	ONLY_REF_SPLICE	YES	170	112	0.26	0.35	0.4529	0.2503	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253JBV_URINARY_TRACT	0.26	0.35	0.7032	TRUE	0	0	0	2	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	XXbac-BPG248L24.12--SPP1	15	2	XXbac-BPG248L24.12	1474	chr6:31324897:+	SPP1	5039	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.1788	0.0238	XXbac-BPG248L24.12->chr6:31324424-31325414:+,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	253JBV_URINARY_TRACT	0.85	1	0.2026	TRUE	0	0	0	5	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	UBXN2A--NCOA1	12	8	UBXN2A	3440	chr2:24163518:+	NCOA1	31430	chr2:24914350:+	ONLY_REF_SPLICE	YES	31	12	0.39	0.62	0.143	0.0953	UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+,NCOA1->Oncogene{Bushman},chr2:24714783-24993571:+,nuclear_receptor_coactivator_1	253JBV_URINARY_TRACT	0.39	0.62	0.2383	TRUE	0	0	0	2	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	ATRNL1--ATP6V0D2	6	7	ATRNL1	12798	chr10:116975638:+	ATP6V0D2	53691	chr8:87151686:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0715	0.0834	ATRNL1->attractin_like_1,chr10:116853124-117708503:+,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	253JBV_URINARY_TRACT	0.93	1	0.1549	TRUE	0	0	0	1	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	RCC1--UBE2D2	5	0	RCC1	2175	chr1:28834672:+	UBE2D2	22302	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0596	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	253JBV_URINARY_TRACT	1	1	0.0596	TRUE	0	20	0	3	11	TRUE	ACH-000026
253JBV_URINARY_TRACT	AP000350.4--PKM	3	5	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	4	1	0.67	0.0358	0.0596	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	253JBV_URINARY_TRACT	0.67	1	0.0954	TRUE	0	0	0	14	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	MIR142--IGH@	4	0	MIR142	1039	chr17:56409831:-	IGH@	113632	chr14:106209407:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	253JBV_URINARY_TRACT	1	1	0.0477	TRUE	0	1	0	3	1	TRUE	ACH-000026
253JBV_URINARY_TRACT	USP34--XPO1	1	10	USP34	1120	chr2:61697785:-	XPO1	85609	chr2:61729175:-	ONLY_REF_SPLICE	YES	10	207	0.52	0.05	0.0119	0.1192	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	253JBV_URINARY_TRACT	0.05	0.52	0.1311	TRUE	0	1	0	4	1	TRUE	ACH-000026
253JBV_URINARY_TRACT	RCC1--RBCK1	3	0	RCC1	2175	chr1:28834672:+	RBCK1	23401	chr20:398170:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+	253JBV_URINARY_TRACT	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	ATRNL1--ATP6V0D2	1	7	ATRNL1	15040	chr10:117001514:+	ATP6V0D2	53691	chr8:87151686:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0119	0.0834	ATRNL1->attractin_like_1,chr10:116853124-117708503:+,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	253JBV_URINARY_TRACT	1	1	0.0953	TRUE	0	0	0	1	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	EXT1--SAMD12	2	0	EXT1	2769	chr8:119122324:-	SAMD12	25699	chr8:119452200:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	2	0	4	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	GPR126--VTA1	2	0	GPR126	5956	chr6:142691930:+	VTA1	41643	chr6:142519576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	0	0	3	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	GPR126--VTA1	2	0	GPR126	2987	chr6:142630781:+	VTA1	42986	chr6:142525122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	KIF26B--C1orf101	2	0	KIF26B	2699	chr1:245319985:+	C1orf101	36739	chr1:244620795:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	PCNP--RMDN1	2	0	PCNP	1185	chr3:101293123:+	RMDN1	30136	chr8:87480936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	PCNP->PEST_proteolytic_signal_containing_nuclear_protein,chr3:101292939-101313281:+,RMDN1->chr8:87480486-87526586:-,regulator_of_microtubule_dynamics_1	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	RP11-275N1.1--NEBL	2	0	RP11-275N1.1	3264	chr10:21657426:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	0	0	3	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	NEGR1--PTGER3	1	2	NEGR1	9662	chr1:72058500:-	PTGER3	28535	chr1:71478167:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0119	0.0238	NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1,PTGER3->chr1:71318036-71513491:-,prostaglandin_E_receptor_3	253JBV_URINARY_TRACT	0.75	1	0.0357	TRUE	0	0	0	2	0	TRUE	ACH-000026
RT112_URINARY_TRACT	FGFR3--TACC3	1835	777	FGFR3	9864	chr4:1808661:+	TACC3	25583	chr4:1741429:+	ONLY_REF_SPLICE	YES	444	526	0.85	0.83	22.3329	9.4565	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	RT112_URINARY_TRACT	0.83	0.85	31.7894	TRUE	0	28	0	1	25	TRUE	ACH-000473
RT112_URINARY_TRACT	FGFR3--TACC3	51	816	FGFR3	9894	chr4:1808691:+	TACC3	24077	chr4:1739923:+	INCL_NON_REF_SPLICE	YES	476	514	0.65	0.63	0.6207	9.9311	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	RT112_URINARY_TRACT	0.63	0.65	10.5518	TRUE	0	5	0	1	5	TRUE	ACH-000473
RT112_URINARY_TRACT	FGFR3--TACC3	12	785	FGFR3	9864	chr4:1808661:+	TACC3	24229	chr4:1740075:+	INCL_NON_REF_SPLICE	YES	444	483	0.64	0.62	0.146	9.5539	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	RT112_URINARY_TRACT	0.62	0.64	9.6999	TRUE	0	5	0	1	5	TRUE	ACH-000473
RT112_URINARY_TRACT	FGFR3--TACC3	10	303	FGFR3	9613	chr4:1808410:+	TACC3	25583	chr4:1741429:+	ONLY_REF_SPLICE	YES	435	526	0.42	0.37	0.1217	3.6877	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	RT112_URINARY_TRACT	0.37	0.42	3.8094	TRUE	0	28	0	1	25	TRUE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	59	0	EWSR1	21315	chr22:29695732:+	KRT13	25489	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7181	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.7181	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	DHRS7B--ALDH3A1	39	0	DHRS7B	2421	chr17:21030304:+	ALDH3A1	26791	chr17:19641766:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4747	0	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,ALDH3A1->aldehyde_dehydrogenase_3_family_member_A1,chr17:19641297-19652256:-	RT112_URINARY_TRACT	1	1	0.4747	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	TRAF2--EPB41L4B	14	12	TRAF2	11938	chr9:139804446:+	EPB41L4B	24170	chr9:112042201:-	ONLY_REF_SPLICE	YES	124	6	0.17	0.81	0.1704	0.146	{Klijn_CCL:Urinary_Bladder=1},TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,EPB41L4B->chr9:111934255-112083244:-,erythrocyte_membrane_protein_band_4.1_like_4B	RT112_URINARY_TRACT	0.17	0.81	0.3164	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	WHSC1--GRK4	12	7	WHSC1	17937	chr4:1941505:+	GRK4	53593	chr4:2986240:+	ONLY_REF_SPLICE	YES	272	0	0.07	1	0.146	0.0852	{Klijn_CCL:Urinary_Bladder=1},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+	RT112_URINARY_TRACT	0.07	1	0.2312	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	9	0	EWSR1	21294	chr22:29695711:+	KRT13	25441	chr17:39661615:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1095	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.1095	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	WHSC1--GRK4	7	2	WHSC1	15609	chr4:1936989:+	GRK4	55802	chr4:2993942:+	ONLY_REF_SPLICE	YES	170	4	0.05	0.69	0.0852	0.0243	{Klijn_CCL:Urinary_Bladder=1},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+	RT112_URINARY_TRACT	0.05	0.69	0.1095	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	WHSC1--GRK4	5	7	WHSC1	20724	chr4:1944292:+	GRK4	53593	chr4:2986240:+	ONLY_REF_SPLICE	YES	253	0	0.05	1	0.0609	0.0852	{Klijn_CCL:Urinary_Bladder=1},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+	RT112_URINARY_TRACT	0.05	1	0.1461	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	6	0	EWSR1	21315	chr22:29695732:+	KRT13	25453	chr17:39661603:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.073	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	4	0	EWSR1	21294	chr22:29695711:+	KRT13	25477	chr17:39661579:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.0487	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	4	0	EWSR1	21282	chr22:29695699:+	KRT13	25489	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.0487	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	TRAF2--EPB41L4B	1	9	TRAF2	10863	chr9:139802683:+	EPB41L4B	24170	chr9:112042201:-	ONLY_REF_SPLICE	YES	130	6	0.07	0.62	0.0122	0.1095	{Klijn_CCL:Urinary_Bladder=1},TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,EPB41L4B->chr9:111934255-112083244:-,erythrocyte_membrane_protein_band_4.1_like_4B	RT112_URINARY_TRACT	0.07	0.62	0.1217	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	3	0	EWSR1	21219	chr22:29695636:+	KRT13	25477	chr17:39661579:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	3	0	EWSR1	21261	chr22:29695678:+	KRT13	25477	chr17:39661579:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	SHMT1--RP1-178F10.1	3	0	SHMT1	2694	chr17:18263728:-	RP1-178F10.1	20245	chr17:18171445:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_INVERSION:-:+:[59045],SHMT1->chr17:18231187-18266856:-,serine_hydroxymethyltransferase_1,RP1-178F10.1->chr17:18171394-18172142:+	RT112_URINARY_TRACT	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	KLHL18--RP11-314M24.1	2	1	KLHL18	1178	chr3:47324584:+	RP11-314M24.1	22918	chr3:78329644:+	ONLY_REF_SPLICE	YES	40	0	0.07	1	0.0243	0.0122	KLHL18->chr3:47324407-47388306:+,kelch_like_family_member_18,RP11-314M24.1->chr3:78316090-78343881:+	RT112_URINARY_TRACT	0.07	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	RP11-357C3.3--ARHGEF9	2	1	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	22895	chrX:62926329:-	ONLY_REF_SPLICE	YES	30	13	0.09	0.19	0.0243	0.0122	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	RT112_URINARY_TRACT	0.09	0.19	0.0365	TRUE	0	3	0	3	0	TRUE	ACH-000473
RT112_URINARY_TRACT	C17orf76-AS1--EIF4A1	2	0	C17orf76-AS1	1593	chr17:16342728:+	EIF4A1	15616	chr17:7478437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	C17orf76-AS1->chr17:16342136-16381992:+,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	RT112_URINARY_TRACT	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	DHRS7B--ALDH3A1	2	0	DHRS7B	2421	chr17:21030304:+	ALDH3A1	26149	chr17:19642408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,ALDH3A1->aldehyde_dehydrogenase_3_family_member_A1,chr17:19641297-19652256:-	RT112_URINARY_TRACT	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	HIF1A--MNAT1	2	0	HIF1A	1327	chr14:62162557:+	MNAT1	31452	chr14:61346432:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+	RT112_URINARY_TRACT	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	PTPRK--ECHDC1	2	0	PTPRK	1467	chr6:128841404:-	ECHDC1	57086	chr6:127652175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,ECHDC1->chr6:127609855-127664754:-,ethylmalonyl-CoA_decarboxylase_1	RT112_URINARY_TRACT	1	1	0.0243	TRUE	0	1	0	1	1	TRUE	ACH-000473
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--DAZAP1	133	1	IGL@	66067	chr22:23248960:+	DAZAP1	91286	chr19:1434434:+	INCL_NON_REF_SPLICE	NO	411	326	0.25	0.29	1.5133	0.0114	IGL@->Oncogene{Bushman},DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.29	1.5247	TRUE	0	0	0	1	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP6--PDK1	52	32	SENP6	16830	chr6:76380436:+	PDK1	47175	chr2:173451006:+	ONLY_REF_SPLICE	YES	92	24	0.48	0.78	0.5917	0.3641	{Klijn_CCL:Lymphoid=1},SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.78	0.9558	TRUE	0	0	0	1	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	8	44	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	7	0	0.88	1	0.091	0.5007	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.5917	TRUE	0	0	0	12	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	7	18	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	2	3	0.93	0.89	0.0796	0.2048	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.93	0.2844	TRUE	0	0	0	16	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	8	10	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	31	0.9	0.37	0.091	0.1138	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.9	0.2048	TRUE	0	0	0	13	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	1	16	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	5	31	0.77	0.35	0.0114	0.1821	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.77	0.1935	TRUE	0	0	0	13	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFE2L1--IGL@	3	0	NFE2L1	3483	chr17:46128619:+	IGL@	50398	chr22:23040613:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,IGL@->Oncogene{Bushman}	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTERFD1--TCEA1	2	0	MTERFD1	1110	chr8:97273729:-	TCEA1	20359	chr8:54900819:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	MTERFD1->chr8:97251626-97273838:-,TCEA1->Oncogene{Bushman},chr8:54879112-54935089:-,transcription_elongation_factor_A1	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SHROOM3--KIAA1551	2	0	SHROOM3	2121	chr4:77357373:+	KIAA1551	44698	chr12:32145312:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,KIAA1551->KIAA1551,chr12:32112304-32146039:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000183
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAMK2G--KCNJ10	95	27	CAMK2G	5650	chr10:75612012:-	KCNJ10	29262	chr1:160012322:-	ONLY_REF_SPLICE	YES	43	0	0.74	1	1.1383	0.3235	CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-,KCNJ10->chr1:160007257-160040038:-,potassium_voltage-gated_channel_subfamily_J_member_10	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	1.4618	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KRIT1--IGSF3	16	15	KRIT1	2265	chr7:91874216:-	IGSF3	26420	chr1:117159079:-	ONLY_REF_SPLICE	YES	56	0	0.36	1	0.1917	0.1797	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.3714	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAMK2G--KCNJ10	16	13	CAMK2G	3657	chr10:75620588:-	KCNJ10	29262	chr1:160012322:-	ONLY_REF_SPLICE	YES	28	0	0.51	1	0.1917	0.1558	CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-,KCNJ10->chr1:160007257-160040038:-,potassium_voltage-gated_channel_subfamily_J_member_10	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	1	0.3475	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KRIT1--IGSF3	12	8	KRIT1	1740	chr7:91874741:-	IGSF3	26420	chr1:117159079:-	ONLY_REF_SPLICE	YES	46	0	0.3	1	0.1438	0.0959	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.2397	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAMK2G--KCNJ10	8	19	CAMK2G	4712	chr10:75612950:-	KCNJ10	29262	chr1:160012322:-	ONLY_REF_SPLICE	YES	49	0	0.36	1	0.0959	0.2277	CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-,KCNJ10->chr1:160007257-160040038:-,potassium_voltage-gated_channel_subfamily_J_member_10	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.3236	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-128A17.1--WDR72	9	1	RP11-128A17.1	1091	chr15:37391630:+	WDR72	23812	chr15:53908440:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1078	0.012	RP11-128A17.1->chr15:37391540-37392374:+,WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGPAT4--PARK2	8	2	AGPAT4	2391	chr6:161653068:-	PARK2	26181	chr6:162475206:-	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0959	0.024	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[73359],AGPAT4->1-acylglycerol-3-phosphate_O-acyltransferase_4,chr6:161551011-161695093:-,PARK2->ArcherDX_panel,FoundationOne_panel,chr6:161768452-163148803:-,parkin_RBR_E3_ubiquitin_protein_ligase	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.1199	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	8	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0959	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0959	TRUE	0	6	0	9	2	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-128A17.1--WDR72	7	3	RP11-128A17.1	1629	chr15:37392168:+	WDR72	23812	chr15:53908440:-	INCL_NON_REF_SPLICE	YES	11	0	0.48	1	0.0839	0.0359	RP11-128A17.1->chr15:37391540-37392374:+,WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENO1--EEF2	6	0	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0719	TRUE	0	0	0	9	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KRIT1--IGSF3	5	1	KRIT1	1377	chr7:91875104:-	IGSF3	26420	chr1:117159079:-	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0599	0.012	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.0719	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KRIT1--IGSF3	3	1	KRIT1	1261	chr7:91875220:-	IGSF3	26420	chr1:117159079:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0359	0.012	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.0479	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--USP46-AS1	2	0	CPSF6	11046	chr12:69656342:+	USP46-AS1	21165	chr4:53527059:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,USP46-AS1->USP46_antisense_RNA_1,chr4:53525573-53527835:+	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDFIP1--CSNK1D	2	0	NDFIP1	6316	chr5:141517423:+	CSNK1D	24855	chr17:80211120:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NDFIP1->Nedd4_family_interacting_protein_1,chr5:141488070-141534005:+,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLCO4A1--L3MBTL3	2	0	SLCO4A1	1109	chr20:61273905:+	L3MBTL3	23420	chr6:130343372:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,L3MBTL3->chr6:130334844-130462594:+,l(3)mbt-like_3_(Drosophila)	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPPL2B--SF3A2	2	0	SPPL2B	1161	chr19:2328774:+	SF3A2	22392	chr19:2243381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	LOCAL_REARRANGEMENT:+:[79936],SPPL2B->Oncogene{Bushman},chr19:2328614-2355099:+,signal_peptide_peptidase_like_2B,SF3A2->chr19:2236520-2248678:+,splicing_factor_3a_subunit_2	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000498
TYKNU_OVARY	PROCR--EEF2	69	0	PROCR	3567	chr20:33764133:+	EEF2	10698	chr19:3982369:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7324	0	PROCR->chr20:33759876-33765165:+,protein_C_receptor,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	TYKNU_OVARY	1	1	0.7324	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	RICTOR--FYB	49	11	RICTOR	19461	chr5:38962417:-	FYB	54685	chr5:39153706:-	ONLY_REF_SPLICE	YES	29	1	0.67	0.98	0.5201	0.1168	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[30828],RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,FYB->FYN_binding_protein,chr5:39105338-39274630:-	TYKNU_OVARY	0.67	0.98	0.6369	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	NFIC--CELF5	18	12	NFIC	3773	chr19:3382241:+	CELF5	27593	chr19:3250983:+	ONLY_REF_SPLICE	YES	93	0	0.24	1	0.1911	0.1274	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[62487],NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C,CELF5->CUGBP,_Elav-like_family_member_5,chr19:3224701-3297074:+	TYKNU_OVARY	0.24	1	0.3185	TRUE	0	1	0	1	1	TRUE	ACH-000430
TYKNU_OVARY	SETD3--CCDC85C	13	1	SETD3	9427	chr14:99879288:-	CCDC85C	27600	chr14:100002425:-	ONLY_REF_SPLICE	YES	97	108	0.13	0.11	0.138	0.0106	LOCAL_REARRANGEMENT:-:[30387],SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C	TYKNU_OVARY	0.11	0.13	0.1486	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	ATAD2B--UBXN2A	5	4	ATAD2B	1560	chr2:24149425:-	UBXN2A	51286	chr2:24181171:+	ONLY_REF_SPLICE	YES	11	58	0.45	0.13	0.0531	0.0425	LOCAL_INVERSION:-:+:[171],ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+	TYKNU_OVARY	0.13	0.45	0.0956	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	VIM--TMSB4X	6	0	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	TYKNU_OVARY	1	1	0.0637	TRUE	0	0	0	15	0	TRUE	ACH-000430
TYKNU_OVARY	RICTOR--FYB	3	3	RICTOR	19461	chr5:38962417:-	FYB	55842	chr5:39141243:-	ONLY_REF_SPLICE	YES	29	6	0.17	0.5	0.0318	0.0318	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[30828],RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,FYB->FYN_binding_protein,chr5:39105338-39274630:-	TYKNU_OVARY	0.17	0.5	0.0636	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	ATP6V1C1--AZIN1	3	0	ATP6V1C1	1163	chr8:104033453:+	AZIN1	27336	chr8:103870378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	GTEx&tcga_normals:1/3694=0.03%,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	TYKNU_OVARY	1	1	0.0318	TRUE	0	1	0	3	0	TRUE	ACH-000430
TYKNU_OVARY	RICTOR--FYB	3	0	RICTOR	1298	chr5:39074213:-	FYB	54685	chr5:39153706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[30828],RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,FYB->FYN_binding_protein,chr5:39105338-39274630:-	TYKNU_OVARY	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	ATAD2B--UBXN2A	1	6	ATAD2B	1560	chr2:24149425:-	UBXN2A	49177	chr2:24162410:+	ONLY_REF_SPLICE	NO	11	2	0.39	0.78	0.0106	0.0637	LOCAL_INVERSION:-:+:[171],ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+	TYKNU_OVARY	0.39	0.78	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	CRIM1--FEZ2	2	0	CRIM1	21418	chr2:36764689:+	FEZ2	48267	chr2:36779311:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	TYKNU_OVARY	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	ESYT2--LUC7L2	2	0	ESYT2	15034	chr7:158552177:-	LUC7L2	43361	chr7:139106909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	TYKNU_OVARY	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	MGST1--ARHGDIA	2	0	MGST1	5873	chr12:16507204:+	ARHGDIA	25948	chr17:79827833:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-	TYKNU_OVARY	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	NRF1--CHD1L	2	0	NRF1	14906	chr7:129367205:+	CHD1L	23219	chr1:146724278:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NRF1->Oncogene{Bushman},chr7:129251555-129396922:+,nuclear_respiratory_factor_1,CHD1L->chr1:146714291-146767443:+,chromodomain_helicase_DNA_binding_protein_1-like	TYKNU_OVARY	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	ATAD2B--UBXN2A	1	2	ATAD2B	1560	chr2:24149425:-	UBXN2A	53458	chr2:24194146:+	ONLY_REF_SPLICE	NO	11	55	0.21	0.05	0.0106	0.0212	LOCAL_INVERSION:-:+:[171],ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+	TYKNU_OVARY	0.05	0.21	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000430
SH4_SKIN	ILF3--SLC44A2	502	231	ILF3	1227	chr19:10765163:+	SLC44A2	30993	chr19:10745432:+	ONLY_REF_SPLICE	YES	292	44	0.72	0.94	4.5494	2.0934	LOCAL_REARRANGEMENT:+:[9702],ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	SH4_SKIN	0.72	0.94	6.6428	TRUE	0	1	0	1	1	TRUE	ACH-000441
SH4_SKIN	ILF3--SLC44A2	25	241	ILF3	1863	chr19:10765799:+	SLC44A2	30993	chr19:10745432:+	ONLY_REF_SPLICE	YES	423	44	0.39	0.86	0.2266	2.1841	LOCAL_REARRANGEMENT:+:[9702],ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	SH4_SKIN	0.39	0.86	2.4107	TRUE	0	1	0	1	1	TRUE	ACH-000441
SH4_SKIN	ILF3--SLC44A2	6	241	ILF3	1887	chr19:10765823:+	SLC44A2	30993	chr19:10745432:+	ONLY_REF_SPLICE	YES	422	44	0.37	0.85	0.0544	2.1841	LOCAL_REARRANGEMENT:+:[9702],ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	SH4_SKIN	0.37	0.85	2.2385	TRUE	0	1	0	1	1	TRUE	ACH-000441
SH4_SKIN	PIP4K2B--C17orf98	41	13	PIP4K2B	9121	chr17:36933940:-	C17orf98	21001	chr17:36993493:-	ONLY_REF_SPLICE	YES	49	0	0.52	1	0.3716	0.1178	LOCAL_REARRANGEMENT:-:[34962],PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,C17orf98->chr17:36991341-36997708:-,chromosome_17_open_reading_frame_98	SH4_SKIN	0.52	1	0.4894	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	PIP4K2B--C17orf98	37	10	PIP4K2B	9121	chr17:36933940:-	C17orf98	22101	chr17:36991599:-	ONLY_REF_SPLICE	YES	49	0	0.49	1	0.3353	0.0906	LOCAL_REARRANGEMENT:-:[34962],PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,C17orf98->chr17:36991341-36997708:-,chromosome_17_open_reading_frame_98	SH4_SKIN	0.49	1	0.4259	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	PIP4K2B--RPL23	32	6	PIP4K2B	9121	chr17:36933940:-	RPL23	25532	chr17:37004292:-	ONLY_REF_SPLICE	YES	49	14	0.44	0.73	0.29	0.0544	LOCAL_REARRANGEMENT:-:[47739],PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	SH4_SKIN	0.44	0.73	0.3444	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	AC131097.3--D2HGDH	11	6	AC131097.3	2273	chr2:242824786:+	D2HGDH	23679	chr2:242707125:+	ONLY_REF_SPLICE	YES	0	168	1	0.09	0.0997	0.0544	AC131097.3->chr2:242823514-243020873:+,D2HGDH->D-2-hydroxyglutarate_dehydrogenase,chr2:242673994-242708231:+	SH4_SKIN	0.09	1	0.1541	TRUE	0	1	0	1	1	TRUE	ACH-000441
SH4_SKIN	CTA-392C11.1--DDHD2	9	2	CTA-392C11.1	2205	chr8:40191393:-	DDHD2	28084	chr8:38117558:+	ONLY_REF_SPLICE	YES	0	48	1	0.19	0.0816	0.0181	CTA-392C11.1->chr8:40156260-40200921:-,DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	SH4_SKIN	0.19	1	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	CTA-392C11.1--DDHD2	6	0	CTA-392C11.1	1125	chr8:40200797:-	DDHD2	28084	chr8:38117558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0544	0	CTA-392C11.1->chr8:40156260-40200921:-,DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	SH4_SKIN	1	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	PIP4K2B--RPL23	3	6	PIP4K2B	9121	chr17:36933940:-	RPL23	25514	chr17:37004310:-	ONLY_REF_SPLICE	YES	49	14	0.16	0.39	0.0272	0.0544	LOCAL_REARRANGEMENT:-:[47739],PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	SH4_SKIN	0.16	0.39	0.0816	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	GAS6-AS1--ING1	4	0	GAS6-AS1	1062	chr13:114518664:+	ING1	12881	chr13:111371576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	SH4_SKIN	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	VDAC1--CTD-2410N18.5	3	0	VDAC1	1487	chr5:133340338:-	CTD-2410N18.5	16152	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,CTD-2410N18.5->chr5:133502861-133561762:-	SH4_SKIN	1	1	0.0272	TRUE	0	0	0	6	0	TRUE	ACH-000441
SH4_SKIN	SGK1--MXI1	2	0	SGK1	12893	chr6:134498801:-	MXI1	28317	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	SGK1->chr6:134490384-134639250:-,serum/glucocorticoid_regulated_kinase_1,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	SH4_SKIN	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	UBR5--AZIN1	2	0	UBR5	1669	chr8:103424401:-	AZIN1	63524	chr8:103870378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx&tcga_normals:1/3694=0.03%,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	SH4_SKIN	1	1	0.0181	TRUE	0	0	0	4	0	TRUE	ACH-000441
SH4_SKIN	ZFP41--MFSD12	2	0	ZFP41	5520	chr8:144333510:+	MFSD12	31698	chr19:3538754:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	ZFP41->ZFP41_zinc_finger_protein,chr8:144328991-144344875:+,chr8:144329280-144358573:+,MFSD12->chr19:3538259-3574288:-,major_facilitator_superfamily_domain_containing_12	SH4_SKIN	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000441
NCIH1648_LUNG	C22orf39--AC023490.1	67	58	C22orf39	1865	chr22:19434891:-	AC023490.1	32925	chr22:20379465:+	INCL_NON_REF_SPLICE	YES	26	19	0.83	0.87	0.6143	0.5318	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,AC023490.1->chr22:20378814-20380440:+	NCIH1648_LUNG	0.83	0.87	1.1461	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	PRKCZ--RP4-758J18.10	53	10	PRKCZ	17465	chr1:2066786:+	RP4-758J18.10	36237	chr1:1369964:-	INCL_NON_REF_SPLICE	YES	50	0	0.56	1	0.486	0.0917	PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta,RP4-758J18.10->chr1:1365919-1369953:-	NCIH1648_LUNG	0.56	1	0.5777	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	WFDC2--SCNN1G	42	12	WFDC2	1827	chr20:44099172:+	SCNN1G	9630	chr16:23197549:+	ONLY_REF_SPLICE	YES	802	1	0.06	0.98	0.3851	0.11	{Klijn_CCL:Lung=1},WFDC2->WAP_four-disulfide_core_domain_2,chr20:44098346-44110172:+,SCNN1G->chr16:23194036-23228204:+,sodium_channel_epithelial_1_gamma_subunit	NCIH1648_LUNG	0.06	0.98	0.4951	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	ATR--GRAMD1C	27	6	ATR	47005	chr3:142176446:-	GRAMD1C	57626	chr3:113563350:+	ONLY_REF_SPLICE	YES	59	0	0.36	1	0.2476	0.055	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,GRAMD1C->GRAM_domain_containing_1C,chr3:113547029-113666021:+	NCIH1648_LUNG	0.36	1	0.3026	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	CASP9--RNF220	20	4	CASP9	3165	chr1:15850564:-	RNF220	26048	chr1:45079837:+	ONLY_REF_SPLICE	YES	23	0	0.51	1	0.1834	0.0367	CASP9->Oncogene{Bushman},caspase_9,chr1:15817327-15853029:-,RNF220->Oncogene{Bushman},chr1:44870866-45117396:+,ring_finger_protein_220	NCIH1648_LUNG	0.51	1	0.2201	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	ATR--GRAMD1C	16	8	ATR	47005	chr3:142176446:-	GRAMD1C	56426	chr3:113557588:+	INCL_NON_REF_SPLICE	YES	59	0	0.29	1	0.1467	0.0734	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,GRAMD1C->GRAM_domain_containing_1C,chr3:113547029-113666021:+	NCIH1648_LUNG	0.29	1	0.2201	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	RALGAPB--SCNN1G	14	6	RALGAPB	26406	chr20:37187096:+	SCNN1G	43516	chr16:23197549:+	ONLY_REF_SPLICE	YES	63	1	0.24	0.95	0.1284	0.055	{Klijn_CCL:Lung=1},RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,SCNN1G->chr16:23194036-23228204:+,sodium_channel_epithelial_1_gamma_subunit	NCIH1648_LUNG	0.24	0.95	0.1834	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	RP5-884C9.2--SFPQ	5	0	RP5-884C9.2	1301	chr1:38513286:+	SFPQ	21950	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	RP5-884C9.2->chr1:38512986-38584697:+,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	NCIH1648_LUNG	1	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	SKI--KCND3	4	0	SKI	2041	chr1:2161174:+	KCND3	18603	chr1:112329728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+,KCND3->chr1:112313284-112531777:-,potassium_voltage-gated_channel_subfamily_D_member_3	NCIH1648_LUNG	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	PRKCZ--RP4-758J18.10	3	2	PRKCZ	17465	chr1:2066786:+	RP4-758J18.10	38533	chr1:1366334:-	ONLY_REF_SPLICE	YES	50	9	0.09	0.36	0.0275	0.0183	PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta,RP4-758J18.10->chr1:1365919-1369953:-	NCIH1648_LUNG	0.09	0.36	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	PRKCZ--ANKRD65	3	0	PRKCZ	17465	chr1:2066786:+	ANKRD65	38468	chr1:1354929:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta,ANKRD65->ankyrin_repeat_domain_65,chr1:1353800-1357149:-	NCIH1648_LUNG	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	SPNS3--NKIRAS2	3	0	SPNS3	1146	chr17:4337128:+	NKIRAS2	18714	chr17:40169358:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	SPNS3->chr17:4336983-4391503:+,spinster_homolog_3_(Drosophila),NKIRAS2->NFKB_inhibitor_interacting_Ras_like_2,chr17:40163400-40177659:+	NCIH1648_LUNG	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	BSG--MKNK2	2	0	BSG	2405	chr19:572701:+	MKNK2	16416	chr19:2043581:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,MKNK2->MAP_kinase_interacting_serine/threonine_kinase_2,chr19:2037470-2051243:-	NCIH1648_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	COPB2--ZNF880	2	0	COPB2	1185	chr3:139108390:-	ZNF880	28713	chr19:52876364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,ZNF880->chr19:52873170-52889048:+,zinc_finger_protein_880	NCIH1648_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	CTD-2127H9.1--SKIL	2	0	CTD-2127H9.1	1162	chr5:38845770:-	SKIL	11341	chr3:170077487:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	CTD-2127H9.1->chr5:38736157-38845931:-,SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+	NCIH1648_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	EDF1--NPDC1	2	0	EDF1	3072	chr9:139757358:-	NPDC1	10409	chr9:139935639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	{Klijn_CCL:Lung=1,Cervix=1,Pancreas=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1	NCIH1648_LUNG	1	1	0.0183	TRUE	0	0	0	5	0	TRUE	ACH-000766
NCIH1648_LUNG	PRDM2--IGF2BP1	2	0	PRDM2	9661	chr1:14075982:+	IGF2BP1	33734	chr17:47102980:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	PRDM2->Oncogene{Bushman},PR_domain_2,chr1:14026693-14151574:+,IGF2BP1->Oncogene{Bushman},chr17:47074774-47133012:+,insulin_like_growth_factor_2_mRNA_binding_protein_1	NCIH1648_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	WFDC2--SCNN1G	2	0	WFDC2	1155	chr20:44098500:+	SCNN1G	9630	chr16:23197549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	{Klijn_CCL:Lung=1},WFDC2->WAP_four-disulfide_core_domain_2,chr20:44098346-44110172:+,SCNN1G->chr16:23194036-23228204:+,sodium_channel_epithelial_1_gamma_subunit	NCIH1648_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	ATR--GRAMD1C	1	3	ATR	47005	chr3:142176446:-	GRAMD1C	59089	chr3:113588354:+	ONLY_REF_SPLICE	NO	59	16	0.06	0.2	0.0092	0.0275	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,GRAMD1C->GRAM_domain_containing_1C,chr3:113547029-113666021:+	NCIH1648_LUNG	0.06	0.2	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	DIP2C--ZMYND11	1	1	DIP2C	7099	chr10:486811:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	YES	6	16	0.25	0.11	0.0092	0.0092	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	NCIH1648_LUNG	0.11	0.25	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000766
SKNMC_BONE	EWSR1--FLI1	273	83	EWSR1	11554	chr22:29683123:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	395	18	0.47	0.95	2.5549	0.7768	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKNMC_BONE	0.47	0.95	3.3317	TRUE	0	0	0	6	0	TRUE	ACH-000039
SKNMC_BONE	PVT1--RP11-26E5.1	131	24	PVT1	1202	chr8:128806980:+	RP11-26E5.1	29531	chr8:130452220:+	ONLY_REF_SPLICE	YES	79	0	0.66	1	1.226	0.2246	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-26E5.1->chr8:130428195-130458098:+	SKNMC_BONE	0.66	1	1.4506	TRUE	0	1	0	1	1	TRUE	ACH-000039
SKNMC_BONE	KIF1B--CNKSR2	92	40	KIF1B	7676	chr1:10322028:+	CNKSR2	71352	chrX:21515905:+	ONLY_REF_SPLICE	YES	53	0	0.71	1	0.861	0.3743	HGNC_GENEFAM,KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,CNKSR2->chrX:21392536-21672813:+,connector_enhancer_of_kinase_suppressor_of_Ras_2	SKNMC_BONE	0.71	1	1.2353	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	YEATS2--GALNT13	92	27	YEATS2	1176	chr3:183415781:+	GALNT13	46208	chr2:154996850:+	ONLY_REF_SPLICE	YES	40	0	0.75	1	0.861	0.2527	YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+,GALNT13->chr2:154728426-155310361:+,polypeptide_N-acetylgalactosaminyltransferase_13	SKNMC_BONE	0.75	1	1.1137	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	CDK5RAP2--RP11-423O2.7	32	21	CDK5RAP2	18830	chr9:123239628:-	RP11-423O2.7	51541	chr1:142952672:-	ONLY_REF_SPLICE	YES	53	0	0.5	1	0.2995	0.1965	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,RP11-423O2.7->chr1:142950985-142956716:-	SKNMC_BONE	0.5	1	0.496	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	EWSR1--FLI1	15	85	EWSR1	12735	chr22:29684775:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	120	18	0.45	0.85	0.1404	0.7955	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKNMC_BONE	0.45	0.85	0.9359	TRUE	0	0	0	2	0	TRUE	ACH-000039
SKNMC_BONE	EWSR1--FLI1	1	83	EWSR1	11554	chr22:29683123:+	FLI1	35098	chr11:128651853:+	ONLY_REF_SPLICE	YES	395	0	0.18	1	0.0094	0.7768	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKNMC_BONE	0.18	1	0.7862	TRUE	0	0	0	5	0	TRUE	ACH-000039
SKNMC_BONE	FGFR3--TACC3	20	7	FGFR3	9864	chr4:1808661:+	TACC3	20430	chr4:1732899:+	ONLY_REF_SPLICE	YES	135	223	0.17	0.11	0.1872	0.0655	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	SKNMC_BONE	0.11	0.17	0.2527	TRUE	0	2	0	2	2	TRUE	ACH-000039
SKNMC_BONE	EWSR1--FLI1	9	48	EWSR1	11554	chr22:29683123:+	FLI1	39468	chr11:128677075:+	ONLY_REF_SPLICE	YES	395	20	0.13	0.74	0.0842	0.4492	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKNMC_BONE	0.13	0.74	0.5334	TRUE	0	0	0	4	0	TRUE	ACH-000039
SKNMC_BONE	PVT1--RP11-26E5.1	9	24	PVT1	2457	chr8:128808254:+	RP11-26E5.1	29531	chr8:130452220:+	ONLY_REF_SPLICE	YES	83	0	0.28	1	0.0842	0.2246	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-26E5.1->chr8:130428195-130458098:+	SKNMC_BONE	0.28	1	0.3088	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	YEATS2--GALNT13	10	7	YEATS2	1176	chr3:183415781:+	GALNT13	48512	chr2:155098543:+	ONLY_REF_SPLICE	YES	40	59	0.3	0.22	0.0936	0.0655	YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+,GALNT13->chr2:154728426-155310361:+,polypeptide_N-acetylgalactosaminyltransferase_13	SKNMC_BONE	0.22	0.3	0.1591	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	CDK5RAP2--RP11-423O2.7	6	15	CDK5RAP2	18830	chr9:123239628:-	RP11-423O2.7	52579	chr1:142951557:-	ONLY_REF_SPLICE	YES	53	0	0.28	1	0.0562	0.1404	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,RP11-423O2.7->chr1:142950985-142956716:-	SKNMC_BONE	0.28	1	0.1966	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	EWSR1--FLI1	3	27	EWSR1	11554	chr22:29683123:+	FLI1	40528	chr11:128679052:+	ONLY_REF_SPLICE	YES	395	60	0.07	0.33	0.0281	0.2527	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKNMC_BONE	0.07	0.33	0.2808	TRUE	0	0	0	5	0	TRUE	ACH-000039
SKNMC_BONE	PVT1--RP11-26E5.1	1	24	PVT1	2520	chr8:128808317:+	RP11-26E5.1	29531	chr8:130452220:+	ONLY_REF_SPLICE	YES	84	0	0.23	1	0.0094	0.2246	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-26E5.1->chr8:130428195-130458098:+	SKNMC_BONE	0.23	1	0.234	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	AL136376.1--RPS28	4	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SKNMC_BONE	1	1	0.0374	TRUE	0	0	0	12	0	TRUE	ACH-000039
SKNMC_BONE	RPLP0--NCL	4	0	RPLP0	2900	chr12:120637139:-	NCL	14557	chr2:232325257:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0,NCL->chr2:232318242-232348352:-,nucleolin	SKNMC_BONE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	KCNQ3--TG	3	0	KCNQ3	1807	chr8:133492394:-	TG	54626	chr8:133941321:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	KCNQ3->chr8:133133108-133493200:-,potassium_voltage-gated_channel_subfamily_Q_member_3,TG->chr8:133879203-134147147:+,thyroglobulin	SKNMC_BONE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	DAD1--PPP2R3C	2	0	DAD1	1323	chr14:23057853:-	PPP2R3C	21044	chr14:35554984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	DAD1->chr14:23033805-23058175:-,defender_against_cell_death_1,PPP2R3C->chr14:35554673-35591723:-,protein_phosphatase_2_regulatory_subunit_B'',_gamma	SKNMC_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	KCNQ3--TG	2	0	KCNQ3	1807	chr8:133492394:-	TG	53455	chr8:133935583:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	KCNQ3->chr8:133133108-133493200:-,potassium_voltage-gated_channel_subfamily_Q_member_3,TG->chr8:133879203-134147147:+,thyroglobulin	SKNMC_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	LBH--YPEL5	2	0	LBH	1234	chr2:30454630:+	YPEL5	15967	chr2:30379494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	LOCAL_REARRANGEMENT:+:[70998],LBH->chr2:30454397-30546596:+,limb_bud_and_heart_development,YPEL5->chr2:30369807-30383399:+,yippee_like_5	SKNMC_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	RP11-357C3.3--ARHGEF9	2	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	22895	chrX:62926329:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	SKNMC_BONE	1	1	0.0187	TRUE	0	3	0	3	0	TRUE	ACH-000039
SKNMC_BONE	XRCC2--SET	2	0	XRCC2	3268	chr7:152357786:-	SET	16513	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	XRCC2->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_2,chr7:152341864-152373250:-,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNMC_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000039
T3M4_PANCREAS	FRS2--KIAA1033	120	154	FRS2	5591	chr12:69924740:+	KIAA1033	28899	chr12:105512224:+	ONLY_REF_SPLICE	YES	41	56	0.87	0.83	1.3716	1.7603	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,KIAA1033->KIAA1033,chr12:105501102-105562912:+	T3M4_PANCREAS	0.83	0.87	3.1319	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	RP11-475J5.5--KRT6A	77	0	RP11-475J5.5	1398	chr5:99390352:-	KRT6A	5361	chr12:52887041:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8801	0	RP11-475J5.5->chr5:99389390-99390749:-,KRT6A->chr12:52880958-52887041:-,keratin_6A	T3M4_PANCREAS	1	1	0.8801	TRUE	0	0	0	2	0	TRUE	ACH-000085
T3M4_PANCREAS	DHX16--FLOT1	43	27	DHX16	9573	chr6:30627249:-	FLOT1	22868	chr6:30695922:-	ONLY_REF_SPLICE	YES	156	267	0.31	0.21	0.4915	0.3086	LOCAL_REARRANGEMENT:-:[54672],DHX16->DEAH-box_helicase_16,chr6:30620896-30640814:-,FLOT1->chr6:30695486-30710510:-,flotillin_1	T3M4_PANCREAS	0.21	0.31	0.8001	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	FRS2--KIAA1033	1	104	FRS2	1182	chr12:69864310:+	KIAA1033	28899	chr12:105512224:+	ONLY_REF_SPLICE	YES	65	56	0.62	0.65	0.0114	1.1888	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,KIAA1033->KIAA1033,chr12:105501102-105562912:+	T3M4_PANCREAS	0.62	0.65	1.2002	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	C18orf8--RP11-370A5.1	12	22	C18orf8	8775	chr18:21099138:+	RP11-370A5.1	22244	chr18:20366821:-	ONLY_REF_SPLICE	YES	76	0	0.31	1	0.1372	0.2515	C18orf8->chr18:21083473-21111746:+,chromosome_18_open_reading_frame_8,RP11-370A5.1->chr18:20303454-20487684:-	T3M4_PANCREAS	0.31	1	0.3887	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	C18orf8--RP11-370A5.1	12	12	C18orf8	8775	chr18:21099138:+	RP11-370A5.1	28681	chr18:20303712:-	ONLY_REF_SPLICE	YES	76	1	0.24	0.96	0.1372	0.1372	C18orf8->chr18:21083473-21111746:+,chromosome_18_open_reading_frame_8,RP11-370A5.1->chr18:20303454-20487684:-	T3M4_PANCREAS	0.24	0.96	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	SMG9--LYPD5	8	4	SMG9	11630	chr19:44237010:-	LYPD5	22903	chr19:44303986:-	ONLY_REF_SPLICE	YES	260	4	0.04	0.75	0.0914	0.0457	LOCAL_REARRANGEMENT:-:[40939],SMG9->SMG9_nonsense_mediated_mRNA_decay_factor,chr19:44235301-44259142:-,LYPD5->LY6/PLAUR_domain_containing_5,chr19:44300081-44331358:-	T3M4_PANCREAS	0.04	0.75	0.1371	TRUE	0	1	0	1	1	TRUE	ACH-000085
T3M4_PANCREAS	C18orf8--RP11-370A5.1	2	22	C18orf8	8775	chr18:21099138:+	RP11-370A5.1	21153	chr18:20371162:-	ONLY_REF_SPLICE	YES	76	0	0.24	1	0.0229	0.2515	C18orf8->chr18:21083473-21111746:+,chromosome_18_open_reading_frame_8,RP11-370A5.1->chr18:20303454-20487684:-	T3M4_PANCREAS	0.24	1	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	C18orf8--NRSN2	4	5	C18orf8	8775	chr18:21099138:+	NRSN2	22536	chr20:329893:+	ONLY_REF_SPLICE	YES	76	4	0.11	0.69	0.0457	0.0572	C18orf8->chr18:21083473-21111746:+,chromosome_18_open_reading_frame_8,NRSN2->chr20:327426-340304:+,neurensin_2	T3M4_PANCREAS	0.11	0.69	0.1029	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	CCAT1--CASC8	2	5	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	28	1	0.2	0.88	0.0229	0.0572	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	T3M4_PANCREAS	0.2	0.88	0.0801	TRUE	0	7	0	7	7	TRUE	ACH-000085
T3M4_PANCREAS	DAPP1--TBCK	2	0	DAPP1	1182	chr4:100738171:+	TBCK	44367	chr4:107133992:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	DAPP1->chr4:100737990-100791311:+,dual_adaptor_of_phosphotyrosine_and_3-phosphoinositides,TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	EPB41L4A--MCC	2	0	EPB41L4A	1376	chr5:111754638:-	MCC	49883	chr5:112487119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	EPB41L4A->chr5:111478138-111755013:-,erythrocyte_membrane_protein_band_4.1_like_4A,MCC->Oncogene{Bushman},chr5:112357796-112824527:-,mutated_in_colorectal_cancers	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	GRK5--ARHGDIA	2	0	GRK5	15753	chr10:121207772:+	ARHGDIA	23683	chr17:79827833:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+,ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	HDAC8--ETF1	2	0	HDAC8	16230	chrX:71681854:-	ETF1	28911	chr5:137849395:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	HDAC8->chrX:71549366-71792953:-,histone_deacetylase_8,ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	KPNA6--KHDRBS1	2	0	KPNA6	1097	chr1:32573735:+	KHDRBS1	25219	chr1:32495899:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},LOCAL_REARRANGEMENT:+:[47188],KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6,KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	2	0	TRUE	ACH-000085
T3M4_PANCREAS	RP1-43E13.2--EIF4G3	2	0	RP1-43E13.2	1059	chr1:19537053:+	EIF4G3	52467	chr1:21139732:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RP1-43E13.2->chr1:19536995-19567198:+,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	RP11-370A5.1--RIOK3	2	0	RP11-370A5.1	5641	chr18:20358082:-	RIOK3	17217	chr18:21046097:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RP11-370A5.1->chr18:20303454-20487684:-,RIOK3->RIO_kinase_3,chr18:21032787-21066567:+	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	SYNE3--GLRX5	2	0	SYNE3	20159	chr14:95898416:-	GLRX5	28549	chr14:96010284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LOCAL_INVERSION:-:+:[57667],SYNE3->chr14:95883831-95942173:-,spectrin_repeat_containing_nuclear_envelope_family_member_3,GLRX5->chr14:95999840-96011061:+,glutaredoxin_5	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	C18orf8--RP11-739L10.1	1	3	C18orf8	8775	chr18:21099138:+	RP11-739L10.1	22356	chr18:20284883:-	ONLY_REF_SPLICE	YES	76	0	0.05	1	0.0114	0.0343	C18orf8->chr18:21083473-21111746:+,chromosome_18_open_reading_frame_8,RP11-739L10.1->chr18:20279444-20513727:-	T3M4_PANCREAS	0.05	1	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	RP11-281P23.1--RP11-281P23.2	1	2	RP11-281P23.1	1582	chr4:11471455:+	RP11-281P23.2	13426	chr4:11771933:+	ONLY_REF_SPLICE	YES	24	0	0.11	1	0.0114	0.0229	RP11-281P23.1->chr4:11470874-11479820:+,RP11-281P23.2->chr4:11627338-11815582:+	T3M4_PANCREAS	0.11	1	0.0343	TRUE	0	1	1	4	1	TRUE	ACH-000085
T3M4_PANCREAS	RP11-20I20.2--CTBP1	1	1	RP11-20I20.2	1114	chr4:1107540:+	CTBP1	8481	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	30	1	0.06	0.0114	0.0114	LOCAL_INVERSION:+:-:[78471],RP11-20I20.2->chr4:1107427-1126765:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	T3M4_PANCREAS	0.06	1	0.0228	TRUE	0	1	1	6	1	TRUE	ACH-000085
HCC1599_BREAST	CYTH1--PRPSAP1	151	22	CYTH1	1096	chr17:76778284:-	PRPSAP1	31877	chr17:74340818:-	ONLY_REF_SPLICE	YES	0	53	1	0.77	1.4925	0.2174	Mitelman{CA_ad=1},{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,PRPSAP1->chr17:74305567-74380602:-,phosphoribosyl_pyrophosphate_synthetase-associated_protein_1	HCC1599_BREAST	0.77	1	1.7099	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	EXOC7--CYTH1	66	20	EXOC7	7025	chr17:74093877:-	CYTH1	31134	chr17:76705814:-	ONLY_REF_SPLICE	YES	84	7	0.51	0.92	0.6523	0.1977	{Klijn_CCL:Breast=1},EXOC7->chr17:74077087-74117657:-,exocyst_complex_component_7,CYTH1->chr17:76670130-76778379:-,cytohesin_1	HCC1599_BREAST	0.51	0.92	0.85	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	GCC2--SEPT10	66	10	GCC2	28232	chr2:109116210:+	SEPT10	42418	chr2:110323436:-	ONLY_REF_SPLICE	YES	11	69	0.87	0.52	0.6523	0.0988	GCC2->GRIP_and_coiled-coil_domain_containing_2,chr2:109065017-109125871:+,SEPT10->chr2:110300559-110371783:-,septin_10	HCC1599_BREAST	0.52	0.87	0.7511	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	RP11-206L10.11--CPSF3L	50	1	RP11-206L10.11	1168	chr1:763155:+	CPSF3L	28833	chr1:1250998:-	ONLY_REF_SPLICE	YES	8	42	0.86	0.55	0.4942	0.0099	RP11-206L10.11->chr1:762988-794826:+,CPSF3L->chr1:1246965-1260071:-,cleavage_and_polyadenylation_specific_factor_3-like	HCC1599_BREAST	0.55	0.86	0.5041	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	MSL2--TRA2B	44	16	MSL2	3270	chr3:135913814:-	TRA2B	20050	chr3:185644522:-	ONLY_REF_SPLICE	YES	33	477	0.65	0.11	0.4349	0.1581	MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila),TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	HCC1599_BREAST	0.11	0.65	0.593	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	LIN54--SCD5	31	7	LIN54	6464	chr4:83891480:-	SCD5	28868	chr4:83602065:-	ONLY_REF_SPLICE	YES	8	18	0.83	0.68	0.3064	0.0692	LIN54->chr4:83831126-83934079:-,lin-54_DREAM_MuvB_core_complex_component,SCD5->chr4:83550692-83720010:-,stearoyl-CoA_desaturase_5	HCC1599_BREAST	0.68	0.83	0.3756	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	ANXA2--C15orf60	31	3	ANXA2	11842	chr15:60678227:-	C15orf60	33681	chr15:73766173:+	ONLY_REF_SPLICE	YES	790	0	0.04	1	0.3064	0.0297	ANXA2->annexin_A2,chr15:60639333-60695082:-,C15orf60->chr15:73735499-73852355:+	HCC1599_BREAST	0.04	1	0.3361	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CYTH1--PRPSAP1	18	18	CYTH1	1096	chr17:76778284:-	PRPSAP1	32944	chr17:74328516:-	ONLY_REF_SPLICE	YES	0	43	1	0.46	0.1779	0.1779	Mitelman{CA_ad=1},{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,PRPSAP1->chr17:74305567-74380602:-,phosphoribosyl_pyrophosphate_synthetase-associated_protein_1	HCC1599_BREAST	0.46	1	0.3558	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	ARHGAP32--CCDC101	14	3	ARHGAP32	1179	chr11:129149041:-	CCDC101	37443	chr16:28592376:+	ONLY_REF_SPLICE	YES	2	20	0.89	0.46	0.1384	0.0297	ARHGAP32->Rho_GTPase_activating_protein_32,chr11:128834955-129149219:-,CCDC101->chr16:28565236-28603111:+	HCC1599_BREAST	0.46	0.89	0.1681	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	DPP8--EXT2	10	2	DPP8	11678	chr15:65777437:-	EXT2	50716	chr11:44253903:+	ONLY_REF_SPLICE	YES	28	15	0.3	0.44	0.0988	0.0198	DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2	HCC1599_BREAST	0.3	0.44	0.1186	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	AC012487.2--LIMS1	9	5	AC012487.2	2451	chr2:109128386:-	LIMS1	14110	chr2:109276061:+	ONLY_REF_SPLICE	YES	1	107	0.93	0.12	0.089	0.0494	LOCAL_INVERSION:-:+:[205],AC012487.2->chr2:109123971-109150652:-,LIMS1->LIM_zinc_finger_domain_containing_1,chr2:109150857-109303702:+	HCC1599_BREAST	0.12	0.93	0.1384	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	GLIPR1--GLIPR1L2	10	0	GLIPR1	6697	chr12:75892500:+	GLIPR1L2	19810	chr12:75816684:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0988	0	PROTCLUST,LOCAL_REARRANGEMENT:+:[47992],GLIPR1->GLI_pathogenesis_related_1,chr12:75874460-75897633:+,GLIPR1L2->GLI_pathogenesis-related_1_like_2,chr12:75784850-75826468:+	HCC1599_BREAST	1	1	0.0988	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	EXD3--NPDC1	8	1	EXD3	27957	chr9:140218177:-	NPDC1	36148	chr9:139937525:-	ONLY_REF_SPLICE	YES	9	22	0.5	0.29	0.0791	0.0099	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1	HCC1599_BREAST	0.29	0.5	0.089	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	ZC3H11A--RP3-428L16.1	8	1	ZC3H11A	1141	chr1:203764922:+	RP3-428L16.1	30986	chr6:161380001:+	ONLY_REF_SPLICE	YES	92	0	0.09	1	0.0791	0.0099	ZC3H11A->chr1:203764782-203823252:+,zinc_finger_CCCH-type_containing_11A,RP3-428L16.1->chr6:161352112-161390803:+	HCC1599_BREAST	0.09	1	0.089	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	PPIG--PDK1	6	5	PPIG	7639	chr2:170471234:+	PDK1	48062	chr2:173488764:+	ONLY_REF_SPLICE	YES	39	2	0.22	0.85	0.0593	0.0494	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1	HCC1599_BREAST	0.22	0.85	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	ANXA2--C15orf60	7	0	ANXA2	11842	chr15:60678227:-	C15orf60	34771	chr15:73832826:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0692	0	ANXA2->annexin_A2,chr15:60639333-60695082:-,C15orf60->chr15:73735499-73852355:+	HCC1599_BREAST	1	1	0.0692	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	RP3-428L16.1--SNRPE	7	0	RP3-428L16.1	3519	chr6:161380096:+	SNRPE	11374	chr1:203839005:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0692	0	RP3-428L16.1->chr6:161352112-161390803:+,SNRPE->chr1:203830731-203839678:+,small_nuclear_ribonucleoprotein_polypeptide_E	HCC1599_BREAST	1	1	0.0692	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	UHRF1--FAM161A	6	4	UHRF1	7807	chr19:4932968:+	FAM161A	24689	chr2:62069533:-	INCL_NON_REF_SPLICE	YES	32	6	0.24	0.62	0.0593	0.0395	UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	HCC1599_BREAST	0.24	0.62	0.0988	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	ZC3H11A--RP3-428L16.1	7	0	ZC3H11A	1122	chr1:203764903:+	RP3-428L16.1	29852	chr6:161377599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0	ZC3H11A->chr1:203764782-203823252:+,zinc_finger_CCCH-type_containing_11A,RP3-428L16.1->chr6:161352112-161390803:+	HCC1599_BREAST	1	1	0.0692	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	LIN54--SCD5	6	3	LIN54	5321	chr4:83900036:-	SCD5	28868	chr4:83602065:-	ONLY_REF_SPLICE	YES	14	18	0.39	0.33	0.0593	0.0297	LIN54->chr4:83831126-83934079:-,lin-54_DREAM_MuvB_core_complex_component,SCD5->chr4:83550692-83720010:-,stearoyl-CoA_desaturase_5	HCC1599_BREAST	0.33	0.39	0.089	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	PPIG--PDK1	5	6	PPIG	7639	chr2:170471234:+	PDK1	46983	chr2:173486152:+	ONLY_REF_SPLICE	YES	39	1	0.22	0.92	0.0494	0.0593	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1	HCC1599_BREAST	0.22	0.92	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	PPP1R9B--DPH7	6	0	PPP1R9B	2484	chr17:48226508:-	DPH7	15641	chr9:140472055:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	PPP1R9B->chr17:48211104-48227991:-,protein_phosphatase_1_regulatory_subunit_9B,DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7	HCC1599_BREAST	1	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	ZC3H11A--RP3-428L16.1	5	1	ZC3H11A	1141	chr1:203764922:+	RP3-428L16.1	29852	chr6:161377599:+	INCL_NON_REF_SPLICE	YES	92	0	0.06	1	0.0494	0.0099	ZC3H11A->chr1:203764782-203823252:+,zinc_finger_CCCH-type_containing_11A,RP3-428L16.1->chr6:161352112-161390803:+	HCC1599_BREAST	0.06	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	ZC3H11A--RP3-428L16.1	5	0	ZC3H11A	1122	chr1:203764903:+	RP3-428L16.1	30986	chr6:161380001:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0494	0	ZC3H11A->chr1:203764782-203823252:+,zinc_finger_CCCH-type_containing_11A,RP3-428L16.1->chr6:161352112-161390803:+	HCC1599_BREAST	1	1	0.0494	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	AUTS2--NOL4	4	3	AUTS2	7553	chr7:69599557:+	NOL4	58748	chr18:31463388:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0395	0.0297	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	HCC1599_BREAST	0.78	1	0.0692	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	UHRF1--FAM161A	4	1	UHRF1	7807	chr19:4932968:+	FAM161A	29773	chr2:62063244:-	ONLY_REF_SPLICE	YES	32	20	0.14	0.2	0.0395	0.0099	UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	HCC1599_BREAST	0.14	0.2	0.0494	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CCT6P3--RP11-172F10.1	3	1	CCT6P3	1212	chr7:64498943:+	RP11-172F10.1	19129	chr18:4775122:-	ONLY_REF_SPLICE	YES	11	0	0.27	1	0.0297	0.0099	CCT6P3->chaperonin_containing_TCP1_subunit_6_pseudogene_3,chr7:64498732-64535091:+,RP11-172F10.1->chr18:4775053-5004536:-	HCC1599_BREAST	0.27	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CCT6P3--RP11-172F10.1	3	1	CCT6P3	1212	chr7:64498943:+	RP11-172F10.1	18068	chr18:4807994:-	ONLY_REF_SPLICE	YES	11	0	0.27	1	0.0297	0.0099	CCT6P3->chaperonin_containing_TCP1_subunit_6_pseudogene_3,chr7:64498732-64535091:+,RP11-172F10.1->chr18:4775053-5004536:-	HCC1599_BREAST	0.27	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	FTO--RAB9B	3	0	FTO	1267	chr16:53738141:+	RAB9B	32701	chrX:103082008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated,RAB9B->RAB9B,_member_RAS_oncogene_family,chrX:103077252-103087158:-	HCC1599_BREAST	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	PPIG--PDK1	3	0	PPIG	7639	chr2:170471234:+	PDK1	49086	chr2:173489788:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1	HCC1599_BREAST	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	RPS3--STYX	3	0	RPS3	2292	chr11:75111821:+	STYX	23180	chr14:53237751:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,STYX->chr14:53196898-53241716:+,serine/threonine/tyrosine_interacting_protein	HCC1599_BREAST	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	UHRF1--FAM161A	2	2	UHRF1	7807	chr19:4932968:+	FAM161A	25966	chr2:62067716:-	ONLY_REF_SPLICE	YES	32	20	0.11	0.17	0.0198	0.0198	UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	HCC1599_BREAST	0.11	0.17	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CASZ1--SPSB2	2	1	CASZ1	2244	chr1:10820758:-	SPSB2	34521	chr12:6991451:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0198	0.0099	CASZ1->castor_zinc_finger_1,chr1:10696661-10856707:-,SPSB2->chr12:6980099-6998522:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_2	HCC1599_BREAST	0.3	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	ARFGEF2--ZFAS1	2	0	ARFGEF2	1121	chr20:47538547:+	ZFAS1	48751	chr20:47905582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+	HCC1599_BREAST	1	1	0.0198	TRUE	0	1	0	2	0	TRUE	ACH-000196
HCC1599_BREAST	AZIN1--LAPTM4B	2	0	AZIN1	7535	chr8:103870241:-	LAPTM4B	26389	chr8:98817581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CD44--NHSL1	2	0	CD44	6502	chr11:35211612:+	NHSL1	37403	chr6:138817508:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,NHSL1->NHS_like_1,chr6:138743180-139013708:-	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CHST8--ZNF573	2	0	CHST8	1342	chr19:34113202:+	ZNF573	28916	chr19:38231095:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CHST8->carbohydrate_sulfotransferase_8,chr19:34112861-34264414:+,ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CHST8--ZNF573	2	0	CHST8	1342	chr19:34113202:+	ZNF573	22983	chr19:38262336:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CHST8->carbohydrate_sulfotransferase_8,chr19:34112861-34264414:+,ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	EXD3--EHMT1	2	0	EXD3	1149	chr9:140317566:-	EHMT1	37413	chr9:140611078:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1},EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	3	0	TRUE	ACH-000196
HCC1599_BREAST	LRRC16A--TRIM44	2	0	LRRC16A	2856	chr6:25285137:+	TRIM44	47877	chr11:35706807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	LRRC16A->chr6:25279306-25620758:+,leucine_rich_repeat_containing_16A,TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	LYPLAL1--TGFB2	2	0	LYPLAL1	3277	chr1:219352588:+	TGFB2	16672	chr1:218607424:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,TGFB2->Oncogene{Bushman},chr1:218519577-218617961:+,transforming_growth_factor_beta_2	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	PPP1R12C--PTMS	2	0	PPP1R12C	8950	chr19:55610152:-	PTMS	21777	chr12:6878769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,PTMS->chr12:6874682-6880116:+,parathymosin	HCC1599_BREAST	1	1	0.0198	TRUE	0	1	0	2	1	TRUE	ACH-000196
HCC1599_BREAST	TNKS2--IDE	2	0	TNKS2	15381	chr10:93602148:+	IDE	64854	chr10:94214296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	TNKS2->chr10:93558069-93625033:+,tankyrase_2,IDE->chr10:94211441-94333833:-,insulin_degrading_enzyme	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	UHRF1--FAM161A	1	4	UHRF1	7807	chr19:4932968:+	FAM161A	24727	chr2:62069495:-	ONLY_REF_SPLICE	YES	32	6	0.14	0.45	0.0099	0.0395	UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	HCC1599_BREAST	0.14	0.45	0.0494	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	VMP1--BRF1	2	0	VMP1	1557	chr17:57785109:+	BRF1	49675	chr14:105695250:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,BRF1->BRF1,_RNA_polymerase_III_transcription_initiation_factor_90_kDa_subunit,chr14:105675623-105781926:-	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	EXOC7--CYTH1	1	3	EXOC7	7025	chr17:74093877:-	CYTH1	33670	chr17:76698686:-	ONLY_REF_SPLICE	YES	84	21	0.05	0.16	0.0099	0.0297	{Klijn_CCL:Breast=1},EXOC7->chr17:74077087-74117657:-,exocyst_complex_component_7,CYTH1->chr17:76670130-76778379:-,cytohesin_1	HCC1599_BREAST	0.05	0.16	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	AUTS2--NOL4	1	1	AUTS2	5415	chr7:69364484:+	NOL4	58748	chr18:31463388:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0099	0.0099	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	HCC1599_BREAST	0.67	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CYB561D2--RP11-24C3.2	1	1	CYB561D2	1866	chr3:50388991:+	RP11-24C3.2	11065	chr3:48482272:-	ONLY_REF_SPLICE	YES	32	0	0.06	1	0.0099	0.0099	CYB561D2->chr3:50388126-50395891:+,cytochrome_b561_family_member_D2,RP11-24C3.2->chr3:48481762-48488060:-	HCC1599_BREAST	0.06	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	DIP2C--ZMYND11	1	1	DIP2C	31439	chr10:394581:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	YES	5	21	0.29	0.09	0.0099	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	HCC1599_BREAST	0.09	0.29	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
EW8_BONE	EWSR1--FLI1	137	92	EWSR1	11554	chr22:29683123:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	354	3	0.39	0.99	1.7141	1.1511	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EW8_BONE	0.39	0.99	2.8652	TRUE	0	0	0	6	0	TRUE	ACH-000499
EW8_BONE	TRHDE--RALYL	84	41	TRHDE	10806	chr12:72771901:+	RALYL	47467	chr8:85799839:+	ONLY_REF_SPLICE	YES	47	0	0.73	1	1.051	0.513	TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	EW8_BONE	0.73	1	1.564	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	SDHA--OXCT1	13	9	SDHA	5842	chr5:226162:+	OXCT1	27774	chr5:41853656:-	ONLY_REF_SPLICE	YES	414	119	0.05	0.16	0.1627	0.1126	SDHA->ArcherDX_panel,FoundationOne_panel,chr5:218356-256815:+,succinate_dehydrogenase_complex_flavoprotein_subunit_A,OXCT1->3-oxoacid_CoA-transferase_1,chr5:41730167-41870621:-	EW8_BONE	0.05	0.16	0.2753	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	GTDC1--R3HDM1	11	5	GTDC1	1130	chr2:145090006:-	R3HDM1	62757	chr2:136418840:+	ONLY_REF_SPLICE	YES	3	131	0.84	0.11	0.1376	0.0626	GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	EW8_BONE	0.11	0.84	0.2002	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	N4BP2L1--SERTM1	6	10	N4BP2L1	1275	chr13:33002041:-	SERTM1	17401	chr13:37269043:+	ONLY_REF_SPLICE	YES	20	37	0.44	0.3	0.0751	0.1251	N4BP2L1->NEDD4_binding_protein_2-like_1,chr13:32974861-33002315:-,SERTM1->chr13:37248049-37271976:+,serine_rich_and_transmembrane_domain_containing_1	EW8_BONE	0.3	0.44	0.2002	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	MBNL3--FUNDC1	7	1	MBNL3	9287	chrX:131524875:-	FUNDC1	28650	chrX:44401347:-	ONLY_REF_SPLICE	YES	0	23	1	0.26	0.0876	0.0125	MBNL3->chrX:131503345-131623996:-,muscleblind_like_splicing_regulator_3,FUNDC1->FUN14_domain_containing_1,chrX:44382885-44402247:-	EW8_BONE	0.26	1	0.1001	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	GTDC1--R3HDM1	4	3	GTDC1	1130	chr2:145090006:-	R3HDM1	63881	chr2:136432902:+	ONLY_REF_SPLICE	YES	3	118	0.7	0.06	0.05	0.0375	GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	EW8_BONE	0.06	0.7	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	ANKRD36--CPED1	4	2	ANKRD36	46849	chr2:97890616:+	CPED1	91027	chr7:120906281:+	ONLY_REF_SPLICE	YES	18	0	0.25	1	0.05	0.025	ANKRD36->ankyrin_repeat_domain_36,chr2:97779233-97930258:+,CPED1->cadherin_like_and_PC-esterase_domain_containing_1,chr7:120628731-120937498:+	EW8_BONE	0.25	1	0.075	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	ELN--TYSND1	4	0	ELN	3702	chr7:73450914:+	TYSND1	30546	chr10:71905801:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin,TYSND1->chr10:71897737-71906432:-,trypsin_domain_containing_1	EW8_BONE	1	1	0.05	TRUE	0	0	0	2	0	TRUE	ACH-000499
EW8_BONE	GTDC1--R3HDM1	1	11	GTDC1	3392	chr2:145075046:-	R3HDM1	62757	chr2:136418840:+	ONLY_REF_SPLICE	YES	6	131	0.67	0.08	0.0125	0.1376	GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	EW8_BONE	0.08	0.67	0.1501	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	CTD-2078B5.2--AHRR	2	5	CTD-2078B5.2	2141	chr5:39521729:+	AHRR	17329	chr5:422844:+	ONLY_REF_SPLICE	YES	63	11	0.1	0.39	0.025	0.0626	CTD-2078B5.2->chr5:39520533-39524810:+,AHRR->aryl-hydrocarbon_receptor_repressor,chr5:304291-438406:+	EW8_BONE	0.1	0.39	0.0876	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	GTDC1--R3HDM1	1	4	GTDC1	2282	chr2:145077286:-	R3HDM1	63881	chr2:136432902:+	ONLY_REF_SPLICE	YES	6	118	0.45	0.04	0.0125	0.05	GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	EW8_BONE	0.04	0.45	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	NAP1L4--COA5	2	0	NAP1L4	21555	chr11:2972489:-	COA5	30993	chr2:99220654:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4,COA5->chr2:99215773-99224978:-,cytochrome_c_oxidase_assembly_factor_5	EW8_BONE	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	PTS--SLC7A1	2	0	PTS	5643	chr11:112103956:+	SLC7A1	20182	chr13:30098390:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PTS->6-pyruvoyltetrahydropterin_synthase,chr11:112097088-112140678:+,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	EW8_BONE	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	RCC1--LRFN5	2	0	RCC1	2175	chr1:28834672:+	LRFN5	27706	chr14:42236057:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,LRFN5->chr14:42076773-42373752:+,leucine_rich_repeat_and_fibronectin_type_III_domain_containing_5	EW8_BONE	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	RP13-16H11.2--LMO3	2	0	RP13-16H11.2	2132	chr10:26957336:-	LMO3	20192	chr12:16713472:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	RP13-16H11.2->chr10:26953135-26965088:-,LMO3->LIM_domain_only_3,Oncogene{Bushman},chr12:16701307-16763528:-	EW8_BONE	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	ZNF850--CTD-2528L19.4	2	0	ZNF850	3134	chr19:37252545:-	CTD-2528L19.4	16747	chr19:38202593:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PROTCLUST,ZNF850->chr19:37205285-37263727:-,zinc_finger_protein_850,CTD-2528L19.4->chr19:38180766-38210089:-	EW8_BONE	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	ANKRD36--CPED1	1	2	ANKRD36	46849	chr2:97890616:+	CPED1	89740	chr7:120901686:+	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0125	0.025	ANKRD36->ankyrin_repeat_domain_36,chr2:97779233-97930258:+,CPED1->cadherin_like_and_PC-esterase_domain_containing_1,chr7:120628731-120937498:+	EW8_BONE	0.14	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	SLC39A10--AC064834.1	1	1	SLC39A10	9336	chr2:196548630:+	AC064834.1	24605	chr2:196320234:+	ONLY_REF_SPLICE	YES	43	0	0.04	1	0.0125	0.0125	LOCAL_REARRANGEMENT:+:[97052],SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10,AC064834.1->chr2:196313256-196343649:+	EW8_BONE	0.04	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000499
PANC0403_PANCREAS	PCBP2--MTND2P28	9	0	PCBP2	11835	chr12:53856343:+	MTND2P28	25766	chr1:565066:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0829	0	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PANC0403_PANCREAS	1	1	0.0829	TRUE	0	0	0	9	0	TRUE	ACH-000235
PANC0403_PANCREAS	PCBP2--MTND2P28	5	0	PCBP2	11799	chr12:53856307:+	MTND2P28	25731	chr1:565031:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PANC0403_PANCREAS	1	1	0.0461	TRUE	0	0	0	9	0	TRUE	ACH-000235
PANC0403_PANCREAS	ACTR3C--RP11-728K20.1	4	0	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	PANC0403_PANCREAS	1	1	0.0369	TRUE	0	5	0	16	1	TRUE	ACH-000235
PANC0403_PANCREAS	ATRX--PGK1	3	0	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	PANC0403_PANCREAS	1	1	0.0276	TRUE	0	1	0	9	0	TRUE	ACH-000235
PANC0403_PANCREAS	C17orf76-AS1--DOCK1	2	0	C17orf76-AS1	1593	chr17:16342728:+	DOCK1	14358	chr10:128768966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	C17orf76-AS1->chr17:16342136-16381992:+,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	PANC0403_PANCREAS	1	1	0.0184	TRUE	0	3	0	2	1	TRUE	ACH-000235
PANC0403_PANCREAS	C4orf19--SDAD1	2	0	C4orf19	2150	chr4:37559698:+	SDAD1	25241	chr4:76882461:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	C4orf19->chr4:37455563-37625117:+,chromosome_4_open_reading_frame_19,SDAD1->SDA1_domain_containing_1,chr4:76862103-76912115:-	PANC0403_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000235
PANC0403_PANCREAS	LAMA3--ESCO1	2	0	LAMA3	59658	chr18:21489259:+	ESCO1	86930	chr18:19164401:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1	PANC0403_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000235
PANC0403_PANCREAS	SCAPER--TSPAN3	2	0	SCAPER	7921	chr15:77134075:-	TSPAN3	55522	chr15:77348597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-,TSPAN3->chr15:77336359-77376326:-,tetraspanin_3	PANC0403_PANCREAS	1	1	0.0184	TRUE	0	1	0	1	1	TRUE	ACH-000235
PANC0403_PANCREAS	SMAGP--EYA3	2	0	SMAGP	5866	chr12:51640535:-	EYA3	25508	chr1:28323889:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	SMAGP->chr12:51638342-51664674:-,small_cell_adhesion_glycoprotein,EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-	PANC0403_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000235
PANC0403_PANCREAS	THEM4--SEC61G	2	0	THEM4	1449	chr1:151881836:-	SEC61G	15390	chr7:54825287:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	THEM4->chr1:151846060-151882284:-,thioesterase_superfamily_member_4,SEC61G->Sec61_translocon_gamma_subunit,chr7:54819943-54827667:-	PANC0403_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000235
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DUSP22--STMND1	88	19	DUSP22	4048	chr6:311962:+	STMND1	21368	chr6:17115193:+	ONLY_REF_SPLICE	YES	69	0	0.61	1	0.6707	0.1448	DUSP22->chr6:291630-351355:+,dual_specificity_phosphatase_22,STMND1->chr6:17102489-17131603:+,stathmin_domain_containing_1	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	0.8155	TRUE	0	0	0	1	0	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTDSP1--IMPDH1P10	10	3	CTDSP1	6162	chr2:219268140:+	IMPDH1P10	12721	chr2:202003716:-	INCL_NON_REF_SPLICE	YES	109	0	0.11	1	0.0762	0.0229	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,IMPDH1P10->IMP_(inosine_monophosphate)_dehydrogenase_1_pseudogene_10,chr2:202002239-202004750:-	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0991	TRUE	1	1	0	1	1	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--ATP5G2	7	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0533	TRUE	0	0	0	7	0	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INCENP--HMHA1	5	0	INCENP	10419	chr11:61912555:+	HMHA1	28778	chr19:1077958:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0	INCENP->chr11:61891445-61920635:+,inner_centromere_protein,HMHA1->chr19:1065922-1086627:+,histocompatibility_(minor)_HA-1	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SURF4--RPLP1	4	0	SURF4	7211	chr9:136229387:-	RPLP1	11308	chr15:69745157:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	SURF4->chr9:136228325-136242970:-,surfeit_4,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	TRUE	0	0	0	4	0	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTDSP1--IMPDH1P10	3	3	CTDSP1	6162	chr2:219268140:+	IMPDH1P10	12724	chr2:202003713:-	INCL_NON_REF_SPLICE	YES	109	0	0.05	1	0.0229	0.0229	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,IMPDH1P10->IMP_(inosine_monophosphate)_dehydrogenase_1_pseudogene_10,chr2:202002239-202004750:-	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0458	TRUE	1	1	0	1	1	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DUSP22--STMND1	2	6	DUSP22	2965	chr6:304661:+	STMND1	21368	chr6:17115193:+	ONLY_REF_SPLICE	YES	21	0	0.28	1	0.0152	0.0457	DUSP22->chr6:291630-351355:+,dual_specificity_phosphatase_22,STMND1->chr6:17102489-17131603:+,stathmin_domain_containing_1	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS9--CLASRP	2	0	RPS9	1868	chr19:54705477:+	CLASRP	25878	chr19:45572324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	RPS9->chr19:54704610-54752862:+,ribosomal_protein_S9,CLASRP->CLK4_associating_serine/arginine_rich_protein,chr19:45542298-45574214:+	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	0	0	1	0	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP1--MGAM	2	0	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	1	0	7	1	TRUE	ACH-000198
MESSA_SOFT_TISSUE	NAMPT--CTB-111H14.1	51	26	NAMPT	16160	chr7:105893463:-	CTB-111H14.1	31883	chr7:106131576:-	ONLY_REF_SPLICE	YES	175	0	0.31	1	0.8396	0.428	LOCAL_REARRANGEMENT:-:[85925],NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase,CTB-111H14.1->chr7:106012697-106410653:-	MESSA_SOFT_TISSUE	0.31	1	1.2676	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	TANGO6--SNTB2	30	10	TANGO6	1108	chr16:68877614:+	SNTB2	35697	chr16:69304046:+	ONLY_REF_SPLICE	YES	8	9	0.83	0.82	0.4939	0.1646	TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2	MESSA_SOFT_TISSUE	0.82	0.83	0.6585	TRUE	0	1	0	1	1	TRUE	ACH-000449
MESSA_SOFT_TISSUE	NAMPT--CTB-111H14.1	21	35	NAMPT	16160	chr7:105893463:-	CTB-111H14.1	29661	chr7:106161265:-	ONLY_REF_SPLICE	YES	175	0	0.24	1	0.3457	0.5762	LOCAL_REARRANGEMENT:-:[85925],NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase,CTB-111H14.1->chr7:106012697-106410653:-	MESSA_SOFT_TISSUE	0.24	1	0.9219	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	MIR940--TSC2	15	5	MIR940	1689	chr16:2318844:+	TSC2	9627	chr16:2100401:+	ONLY_REF_SPLICE	YES	2	40	0.91	0.33	0.2469	0.0823	MIR940->chr16:2318156-2323419:+,microRNA_940,TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2	MESSA_SOFT_TISSUE	0.33	0.91	0.3292	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	MIR940--TSC2	12	1	MIR940	1111	chr16:2318266:+	TSC2	9627	chr16:2100401:+	ONLY_REF_SPLICE	YES	0	40	1	0.25	0.1976	0.0165	MIR940->chr16:2318156-2323419:+,microRNA_940,TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2	MESSA_SOFT_TISSUE	0.25	1	0.2141	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	RHEB--PRKAG2	9	12	RHEB	7545	chr7:151174419:-	PRKAG2	29978	chr7:151292540:-	ONLY_REF_SPLICE	YES	460	108	0.04	0.16	0.1482	0.1976	LOCAL_REARRANGEMENT:-:[35991],RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-,PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2	MESSA_SOFT_TISSUE	0.04	0.16	0.3458	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	CRTC1--KLHL26	3	3	CRTC1	1152	chr19:18794638:+	KLHL26	28197	chr19:18775071:+	ONLY_REF_SPLICE	YES	16	3	0.27	0.67	0.0494	0.0494	LOCAL_REARRANGEMENT:+:[13178],CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,KLHL26->chr19:18747775-18781309:+,kelch_like_family_member_26	MESSA_SOFT_TISSUE	0.27	0.67	0.0988	TRUE	0	3	0	1	3	TRUE	ACH-000449
MESSA_SOFT_TISSUE	CELSR1--CERK	3	1	CELSR1	4544	chr22:46929524:-	CERK	56504	chr22:47091212:-	ONLY_REF_SPLICE	YES	16	55	0.2	0.07	0.0494	0.0165	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,CERK->ceramide_kinase,chr22:47080308-47134158:-	MESSA_SOFT_TISSUE	0.07	0.2	0.0659	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	ACACA--SYNRG	2	0	ACACA	25394	chr17:35627642:-	SYNRG	88198	chr17:35937711:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,SYNRG->chr17:35874900-35969544:-,synergin,_gamma	MESSA_SOFT_TISSUE	1	1	0.0329	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	EIF4A2--ZMYND11	2	0	EIF4A2	1435	chr3:186501428:+	ZMYND11	12796	chr10:225934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	MESSA_SOFT_TISSUE	1	1	0.0329	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	GLG1--PSMD7	2	0	GLG1	23838	chr16:74499574:-	PSMD7	41088	chr16:74338201:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,PSMD7->chr16:74330673-74340186:+,proteasome_26S_subunit,_non-ATPase_7	MESSA_SOFT_TISSUE	1	1	0.0329	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	METAP1--EIF4E	2	0	METAP1	1248	chr4:99917018:+	EIF4E	28557	chr4:99823133:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	{Klijn_CCL:Sarcomatoid=1,Stomach=1},LOCAL_INVERSION:+:-:[64983],METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	MESSA_SOFT_TISSUE	1	1	0.0329	TRUE	0	1	0	7	1	TRUE	ACH-000449
MESSA_SOFT_TISSUE	RBM6--RHOA	2	0	RBM6	3185	chr3:50000118:+	RHOA	37115	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Pituitary=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	MESSA_SOFT_TISSUE	1	1	0.0329	TRUE	0	4	1	6	1	TRUE	ACH-000449
MESSA_SOFT_TISSUE	RARB--AC133680.1	1	2	RARB	1244	chr3:25216066:+	AC133680.1	22874	chr3:25215610:+	ONLY_REF_SPLICE	YES	59	10	0.05	0.23	0.0165	0.0329	LOCAL_REARRANGEMENT:+:[27],RARB->Oncogene{Bushman},chr3:25215823-25639423:+,retinoic_acid_receptor_beta,AC133680.1->chr3:24729410-25215796:+	MESSA_SOFT_TISSUE	0.05	0.23	0.0494	TRUE	0	1	0	2	1	TRUE	ACH-000449
MESSA_SOFT_TISSUE	RP11-275N1.1--NEBL	1	2	RP11-275N1.1	3264	chr10:21657426:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	4	13	0.43	0.19	0.0165	0.0329	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	MESSA_SOFT_TISSUE	0.19	0.43	0.0494	TRUE	0	0	0	3	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	RP11-275N1.1--NEBL	1	1	RP11-275N1.1	2205	chr10:21658896:-	NEBL	14143	chr10:21309130:-	ONLY_REF_SPLICE	YES	6	25	0.25	0.07	0.0165	0.0165	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	MESSA_SOFT_TISSUE	0.07	0.25	0.033	TRUE	0	0	0	3	0	TRUE	ACH-000449
CORL311_LUNG	PREP--RP1-302G2.5	914	549	PREP	2313	chr6:105845728:-	RP1-302G2.5	22375	chr6:44185187:+	ONLY_REF_SPLICE	YES	91	1	0.94	1	11.8701	7.1298	PREP->chr6:105725440-105850959:-,prolyl_endopeptidase,RP1-302G2.5->chr6:44184676-44185973:+	CORL311_LUNG	0.94	1	18.9999	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	272	268	PVT1	1202	chr8:128806980:+	ATG5	35939	chr6:106649964:-	ONLY_REF_SPLICE	YES	287	1528	0.65	0.26	3.5325	3.4805	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.26	0.65	7.013	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	NCAM1--USP28	67	138	NCAM1	1390	chr11:112832386:+	USP28	69895	chr11:113674003:-	ONLY_REF_SPLICE	YES	489	354	0.3	0.37	0.8701	1.7922	NCAM1->chr11:112831997-113149158:+,neural_cell_adhesion_molecule_1,USP28->chr11:113668596-113746292:-,ubiquitin_specific_peptidase_28	CORL311_LUNG	0.3	0.37	2.6623	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	NCAM1--USP28	54	168	NCAM1	1390	chr11:112832386:+	USP28	69299	chr11:113674599:-	ONLY_REF_SPLICE	YES	489	465	0.31	0.32	0.7013	2.1818	NCAM1->chr11:112831997-113149158:+,neural_cell_adhesion_molecule_1,USP28->chr11:113668596-113746292:-,ubiquitin_specific_peptidase_28	CORL311_LUNG	0.31	0.32	2.8831	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	14	277	PVT1	2457	chr8:128808254:+	ATG5	35939	chr6:106649964:-	ONLY_REF_SPLICE	YES	279	1528	0.51	0.16	0.1818	3.5974	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.16	0.51	3.7792	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	11	272	PVT1	1202	chr8:128806980:+	ATG5	34504	chr6:106696119:-	ONLY_REF_SPLICE	YES	287	1470	0.5	0.16	0.1429	3.5325	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.16	0.5	3.6754	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	6	280	PVT1	2520	chr8:128808317:+	ATG5	35939	chr6:106649964:-	ONLY_REF_SPLICE	YES	275	1528	0.51	0.16	0.0779	3.6364	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.16	0.51	3.7143	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	TTC12--CWF19L2	59	62	TTC12	18552	chr11:113230730:+	CWF19L2	42706	chr11:107263621:-	ONLY_REF_SPLICE	YES	187	145	0.39	0.45	0.7662	0.8052	TTC12->chr11:113185251-113254266:+,tetratricopeptide_repeat_domain_12,CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-	CORL311_LUNG	0.39	0.45	1.5714	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	1	288	PVT1	2520	chr8:128808317:+	ATG5	29968	chr6:106764141:-	ONLY_REF_SPLICE	YES	275	1066	0.51	0.21	0.013	3.7402	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.21	0.51	3.7532	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	3	275	PVT1	1202	chr8:128806980:+	ATG5	29968	chr6:106764141:-	ONLY_REF_SPLICE	NO	287	1066	0.49	0.21	0.039	3.5714	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.21	0.49	3.6104	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	3	273	PVT1	1202	chr8:128806980:+	ATG5	32262	chr6:106740981:-	ONLY_REF_SPLICE	YES	287	1795	0.49	0.13	0.039	3.5454	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.13	0.49	3.5844	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	1	281	PVT1	5344	chr8:128864593:+	ATG5	35939	chr6:106649964:-	ONLY_REF_SPLICE	YES	268	1528	0.51	0.16	0.013	3.6493	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.16	0.51	3.6623	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	NCAM1--USP28	51	32	NCAM1	1390	chr11:112832386:+	USP28	72238	chr11:113670137:-	ONLY_REF_SPLICE	YES	489	413	0.15	0.17	0.6623	0.4156	NCAM1->chr11:112831997-113149158:+,neural_cell_adhesion_molecule_1,USP28->chr11:113668596-113746292:-,ubiquitin_specific_peptidase_28	CORL311_LUNG	0.15	0.17	1.0779	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	DNAJC3--HS6ST3	42	50	DNAJC3	1199	chr13:96329591:+	HS6ST3	20799	chr13:97484744:+	ONLY_REF_SPLICE	YES	17	3	0.84	0.97	0.5455	0.6493	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,HS6ST3->chr13:96743093-97485671:+,heparan_sulfate_6-O-sulfotransferase_3	CORL311_LUNG	0.84	0.97	1.1948	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	TTC12--CWF19L2	43	27	TTC12	16906	chr11:113222929:+	CWF19L2	42706	chr11:107263621:-	ONLY_REF_SPLICE	YES	204	145	0.26	0.33	0.5584	0.3506	TTC12->chr11:113185251-113254266:+,tetratricopeptide_repeat_domain_12,CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-	CORL311_LUNG	0.26	0.33	0.909	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--MYC	24	33	PVT1	13955	chr8:129001537:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	155	1498	0.27	0.04	0.3117	0.4286	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CORL311_LUNG	0.04	0.27	0.7403	TRUE	0	0	0	3	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--MYC	18	56	PVT1	18060	chr8:129022690:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	48	1498	0.61	0.05	0.2338	0.7273	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CORL311_LUNG	0.05	0.61	0.9611	TRUE	0	0	0	3	0	TRUE	ACH-000187
CORL311_LUNG	SETD2--SCAP	24	29	SETD2	1114	chr3:47205344:-	SCAP	38996	chr3:47484581:-	ONLY_REF_SPLICE	YES	24	0	0.69	1	0.3117	0.3766	SETD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SET_domain_containing_2,chr3:47057919-47205457:-,SCAP->SREBF_chaperone,chr3:47455203-47518616:-	CORL311_LUNG	0.69	1	0.6883	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--MYC	22	33	PVT1	13955	chr8:129001537:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	155	1448	0.26	0.04	0.2857	0.4286	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CORL311_LUNG	0.04	0.26	0.7143	TRUE	0	0	0	3	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--MYC	13	56	PVT1	18060	chr8:129022690:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	48	1448	0.59	0.05	0.1688	0.7273	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CORL311_LUNG	0.05	0.59	0.8961	TRUE	0	0	0	3	0	TRUE	ACH-000187
CORL311_LUNG	IQCA1--KYNU	16	16	IQCA1	1286	chr2:237415900:-	KYNU	36653	chr2:143676178:+	ONLY_REF_SPLICE	YES	21	0	0.6	1	0.2078	0.2078	IQCA1->IQ_motif_containing_with_AAA_domain_1,chr2:237232794-237416185:-,KYNU->chr2:143635067-143799890:+,kynureninase	CORL311_LUNG	0.6	1	0.4156	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	ARHGAP23--PRTFDC1	18	0	ARHGAP23	1131	chr17:36584792:+	PRTFDC1	35735	chr10:25160992:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2338	0	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,PRTFDC1->chr10:25137536-25241533:-,phosphoribosyl_transferase_domain_containing_1	CORL311_LUNG	1	1	0.2338	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PREP--RP1-302G2.5	1	66	PREP	1238	chr6:105850722:-	RP1-302G2.5	22375	chr6:44185187:+	ONLY_REF_SPLICE	YES	22	1	0.75	0.99	0.013	0.8571	PREP->chr6:105725440-105850959:-,prolyl_endopeptidase,RP1-302G2.5->chr6:44184676-44185973:+	CORL311_LUNG	0.75	0.99	0.8701	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--MYC	3	57	PVT1	19222	chr8:129060855:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	14	1498	0.81	0.04	0.039	0.7403	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CORL311_LUNG	0.04	0.81	0.7793	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--MYC	2	57	PVT1	19222	chr8:129060855:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	14	1448	0.81	0.04	0.026	0.7403	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CORL311_LUNG	0.04	0.81	0.7663	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	ZNF124--RABGAP1L	13	13	ZNF124	1169	chr1:247335150:-	RABGAP1L	46118	chr1:174780970:+	ONLY_REF_SPLICE	YES	50	26	0.34	0.5	0.1688	0.1688	ZNF124->chr1:247285277-247335318:-,zinc_finger_protein_124,RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+	CORL311_LUNG	0.34	0.5	0.3376	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	RP11-1407O15.2--KIAA1217	13	9	RP11-1407O15.2	5790	chr17:36375100:-	KIAA1217	31487	chr10:24166335:+	ONLY_REF_SPLICE	YES	217	0	0.09	1	0.1688	0.1169	RP11-1407O15.2->chr17:36337717-36421858:-,KIAA1217->KIAA1217,chr10:23983675-24836772:+	CORL311_LUNG	0.09	1	0.2857	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	TTC12--CWF19L2	4	43	TTC12	18005	chr11:113230183:+	CWF19L2	42706	chr11:107263621:-	ONLY_REF_SPLICE	YES	179	145	0.21	0.24	0.0519	0.5584	TTC12->chr11:113185251-113254266:+,tetratricopeptide_repeat_domain_12,CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-	CORL311_LUNG	0.21	0.24	0.6103	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	ZNF124--RABGAP1L	7	18	ZNF124	3031	chr1:247322308:-	RABGAP1L	46118	chr1:174780970:+	ONLY_REF_SPLICE	YES	48	26	0.34	0.49	0.0909	0.2338	ZNF124->chr1:247285277-247335318:-,zinc_finger_protein_124,RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+	CORL311_LUNG	0.34	0.49	0.3247	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	DNM1L--FGD4	8	11	DNM1L	1266	chr12:32832399:+	FGD4	36052	chr12:32717071:+	ONLY_REF_SPLICE	YES	157	80	0.11	0.19	0.1039	0.1429	LOCAL_REARRANGEMENT:+:[33150],DNM1L->chr12:32832134-32898486:+,dynamin_1-like,FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+	CORL311_LUNG	0.11	0.19	0.2468	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	AC017099.3--MGAT4A	8	7	AC017099.3	10770	chr2:98292391:+	MGAT4A	36179	chr2:99260516:-	ONLY_REF_SPLICE	YES	17	44	0.47	0.25	0.1039	0.0909	AC017099.3->chr2:98280680-98319527:+,MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A	CORL311_LUNG	0.25	0.47	0.1948	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	CLEC16A--TNFRSF17	8	4	CLEC16A	11984	chr16:11097162:+	TNFRSF17	43262	chr16:12060052:+	ONLY_REF_SPLICE	YES	26	1	0.32	0.92	0.1039	0.0519	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,TNFRSF17->Oncogene{Bushman},chr16:12058964-12061925:+,tumor_necrosis_factor_receptor_superfamily_member_17	CORL311_LUNG	0.32	0.92	0.1558	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	KYNU--COL6A3	7	2	KYNU	6921	chr2:143685310:+	COL6A3	26438	chr2:238305490:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0909	0.026	KYNU->chr2:143635067-143799890:+,kynureninase,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	CORL311_LUNG	0.9	1	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	SOBP--PRDM1	6	3	SOBP	4080	chr6:107827631:+	PRDM1	19411	chr6:106536076:+	ONLY_REF_SPLICE	YES	95	12	0.09	0.43	0.0779	0.039	SOBP->chr6:107811162-107981357:+,sine_oculis_binding_protein_homolog,PRDM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},PR_domain_1,chr6:106534195-106557814:+	CORL311_LUNG	0.09	0.43	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	ARHGAP23--PRTFDC1	6	0	ARHGAP23	1131	chr17:36584792:+	PRTFDC1	34350	chr10:25197614:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0779	0	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,PRTFDC1->chr10:25137536-25241533:-,phosphoribosyl_transferase_domain_containing_1	CORL311_LUNG	1	1	0.0779	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	SETD2--SCAP	3	10	SETD2	1114	chr3:47205344:-	SCAP	40216	chr3:47476627:-	ONLY_REF_SPLICE	YES	24	124	0.35	0.09	0.039	0.1299	SETD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SET_domain_containing_2,chr3:47057919-47205457:-,SCAP->SREBF_chaperone,chr3:47455203-47518616:-	CORL311_LUNG	0.09	0.35	0.1689	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PDSS2--RP3-359N14.2	4	2	PDSS2	1575	chr6:107780194:-	RP3-359N14.2	17988	chr6:106077903:-	ONLY_REF_SPLICE	YES	72	0	0.08	1	0.0519	0.026	PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2,RP3-359N14.2->chr6:106060542-106080071:-	CORL311_LUNG	0.08	1	0.0779	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	CA12--VPS13C	4	1	CA12	3866	chr15:63667857:-	VPS13C	68003	chr15:62232993:-	ONLY_REF_SPLICE	YES	1	27	0.83	0.16	0.0519	0.013	CA12->carbonic_anhydrase_12,chr15:63613577-63674360:-,VPS13C->chr15:62144588-62352672:-,vacuolar_protein_sorting_13_homolog_C	CORL311_LUNG	0.16	0.83	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	MSH4--PPA1	3	0	MSH4	8266	chr1:76288266:+	PPA1	33432	chr10:71969441:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	MSH4->chr1:76262567-76378923:+,mutS_homolog_4,PPA1->chr10:71962586-71993667:-,pyrophosphatase_(inorganic)_1	CORL311_LUNG	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	WTIP--KIAA0355	3	0	WTIP	2673	chr19:34973546:+	KIAA0355	22005	chr19:34790584:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	WTIP->Wilms_tumor_1_interacting_protein,chr19:34971874-34997258:+,KIAA0355->KIAA0355,chr19:34745442-34846491:+	CORL311_LUNG	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	CDCA7L--BZW2	2	0	CDCA7L	8194	chr7:21946186:-	BZW2	24244	chr7:16725530:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CDCA7L->cell_division_cycle_associated_7_like,chr7:21940518-21985702:-,BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	CDH4--GNAS	2	0	CDH4	2257	chr20:59829993:+	GNAS	42120	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CDH4->cadherin_4,chr20:59827482-60515673:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	CORL311_LUNG	1	1	0.026	TRUE	0	3	0	3	0	TRUE	ACH-000187
CORL311_LUNG	DIRAS2--NT5DC3	2	0	DIRAS2	1353	chr9:93405034:-	NT5DC3	26050	chr12:104169408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	DIRAS2->DIRAS_family_GTP_binding_RAS_like_2,chr9:93372114-93405386:-,NT5DC3->5'-nucleotidase_domain_containing_3,chr12:104164231-104234975:-	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	GCDH--APLP2	2	0	GCDH	2153	chr19:13002992:+	APLP2	31806	chr11:130007151:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	GCDH->chr19:13001840-13025021:+,glutaryl-CoA_dehydrogenase,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	KIF11--C9orf3	2	0	KIF11	1167	chr10:94353209:+	C9orf3	62159	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	KIF11->chr10:94353043-94415150:+,kinesin_family_member_11,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PNPLA7--EIF3B	2	0	PNPLA7	21676	chr9:140374764:-	EIF3B	50320	chr7:2418324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	QPCTL--CCDC94	2	0	QPCTL	2074	chr19:46196814:+	CCDC94	13119	chr19:4249225:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	QPCTL->chr19:46195741-46207247:+,glutaminyl-peptide_cyclotransferase-like,CCDC94->chr19:4247076-4269087:+,coiled-coil_domain_containing_94	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	QRSL1--ATG5	2	0	QRSL1	1128	chr6:107077580:+	ATG5	23642	chr6:106696119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	QRSL1->chr6:107077453-107116292:+,glutaminyl-tRNA_synthase_(glutamine-hydrolyzing)-like_1,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	RPRD1A--GALNT1	2	0	RPRD1A	1323	chr18:33647217:-	GALNT1	25260	chr18:33234524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	RSRC2--CDK2AP1	2	0	RSRC2	1153	chr12:123011395:-	CDK2AP1	24708	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RSRC2->arginine/serine-rich_coiled-coil_2,chr12:122989190-123011547:-,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	SETX--GTF3C4	2	0	SETX	18821	chr9:135172274:-	GTF3C4	45807	chr9:135562626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	SETX->chr9:135136743-135230372:-,senataxin,GTF3C4->chr9:135545422-135570342:+,general_transcription_factor_IIIC_subunit_4	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	TBL3--KCTD5	2	0	TBL3	1169	chr16:2022206:+	KCTD5	22879	chr16:2757299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	TBL3->chr16:2022038-2032934:+,transducin_beta_like_3,KCTD5->chr16:2732476-2759031:+,potassium_channel_tetramerization_domain_containing_5	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	ZCCHC8--SMC4	2	0	ZCCHC8	4220	chr12:122977262:-	SMC4	32882	chr3:160138528:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ZCCHC8->chr12:122957417-122985518:-,zinc_finger_CCHC-type_containing_8,SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	ZNF562--NMT2	2	0	ZNF562	1086	chr19:9785691:-	NMT2	24346	chr10:15161512:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ZNF562->chr19:9759330-9785776:-,zinc_finger_protein_562,NMT2->N-myristoyltransferase_2,chr10:15144583-15210692:-	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	ZNF738--HOXA3	2	0	ZNF738	7035	chr19:21558766:+	HOXA3	14707	chr7:27179805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,HOXA3->Oncogene{Bushman},chr7:27145803-27192200:-,homeobox_A3	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	CLEC16A--TNFRSF17	1	2	CLEC16A	11984	chr16:11097162:+	TNFRSF17	44637	chr16:12061427:+	ONLY_REF_SPLICE	YES	26	5	0.1	0.38	0.013	0.026	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,TNFRSF17->Oncogene{Bushman},chr16:12058964-12061925:+,tumor_necrosis_factor_receptor_superfamily_member_17	CORL311_LUNG	0.1	0.38	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	LIMCH1--NSUN7	1	2	LIMCH1	7853	chr4:41526495:+	NSUN7	64167	chr4:40800804:+	ONLY_REF_SPLICE	YES	71	2	0.04	0.6	0.013	0.026	LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,NSUN7->NOP2/Sun_RNA_methyltransferase_family_member_7,chr4:40751914-40812002:+	CORL311_LUNG	0.04	0.6	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	GUCY1A2--RP11-89C3.4	1	1	GUCY1A2	5675	chr11:106810186:-	RP11-89C3.4	30490	chr11:110963035:-	ONLY_REF_SPLICE	NO	29	0	0.06	1	0.013	0.013	GUCY1A2->Oncogene{Bushman},chr11:106544738-106889250:-,guanylate_cyclase_1,_soluble,_alpha_2,RP11-89C3.4->chr11:110962656-110968081:-	CORL311_LUNG	0.06	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	IQCA1--COL6A3	1	1	IQCA1	1286	chr2:237415900:-	COL6A3	33359	chr2:238305490:-	ONLY_REF_SPLICE	NO	21	0	0.09	1	0.013	0.013	IQCA1->IQ_motif_containing_with_AAA_domain_1,chr2:237232794-237416185:-,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	CORL311_LUNG	0.09	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	RNF168--PAK2	1	1	RNF168	1896	chr3:196229744:-	PAK2	15649	chr3:196509497:+	ONLY_REF_SPLICE	YES	44	9	0.04	0.18	0.013	0.013	RNF168->chr3:196195654-196230639:-,ring_finger_protein_168,PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2	CORL311_LUNG	0.04	0.18	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	RP11-368L12.1--RP11-96H17.1	1	1	RP11-368L12.1	4754	chr16:63368504:-	RP11-96H17.1	10295	chr16:63153269:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.013	0.013	GTEx_FI:{Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4]},RP11-368L12.1->chr16:63348168-63651950:-,RP11-96H17.1->chr16:63090690-63163558:-	CORL311_LUNG	1	1	0.026	TRUE	1	3	0	2	3	TRUE	ACH-000187
CORL311_LUNG	STK33--LMO1	1	1	STK33	23055	chr11:8457041:-	LMO1	33289	chr11:8252051:-	ONLY_REF_SPLICE	YES	36	5	0.05	0.29	0.013	0.013	STK33->chr11:8413418-8615836:-,serine/threonine_kinase_33,LMO1->ArcherDX_panel,FoundationOne_panel,LIM_domain_only_1,Oncogene{Bushman},chr11:8245851-8290263:-	CORL311_LUNG	0.05	0.29	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
NCIH1693_LUNG	KPNB1--ZNF595	210	77	KPNB1	11478	chr17:45742524:+	ZNF595	31984	chr4:59323:+	ONLY_REF_SPLICE	YES	449	389	0.39	0.42	2.1722	0.7965	{Klijn_CCL:Lung=1},KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	NCIH1693_LUNG	0.39	0.42	2.9687	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	RPS6KB1--RP11-763B22.6	209	28	RPS6KB1	1240	chr17:57970686:+	RP11-763B22.6	24956	chr1:148852402:+	INCL_NON_REF_SPLICE	YES	50	0	0.83	1	2.1618	0.2896	RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,RP11-763B22.6->chr1:148852393-148853717:+	NCIH1693_LUNG	0.83	1	2.4514	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	RP11-435B5.4--DAB1	133	60	RP11-435B5.4	2843	chr1:143465380:-	DAB1	32542	chr1:57756838:-	ONLY_REF_SPLICE	YES	63	0	0.75	1	1.3757	0.6206	RP11-435B5.4->chr1:143354963-143467632:-,DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-	NCIH1693_LUNG	0.75	1	1.9963	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	AP003900.6--RP11-435B5.4	107	4	AP003900.6	1122	chr21:11169841:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	10	3	0.92	0.97	1.1068	0.0414	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	NCIH1693_LUNG	0.92	0.97	1.1482	TRUE	1	3	0	6	3	TRUE	ACH-000021
NCIH1693_LUNG	TIMM17A--IPO9	39	11	TIMM17A	2162	chr1:201926508:+	IPO9	24653	chr1:201832576:+	ONLY_REF_SPLICE	YES	397	53	0.11	0.49	0.4034	0.1138	LOCAL_REARRANGEMENT:+:[71197],TIMM17A->chr1:201924619-201939789:+,translocase_of_inner_mitochondrial_membrane_17_homolog_A_(yeast),IPO9->chr1:201798269-201853422:+,importin_9	NCIH1693_LUNG	0.11	0.49	0.5172	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	AGAP3--TTC26	38	12	AGAP3	14789	chr7:150820973:+	TTC26	39411	chr7:138849878:+	ONLY_REF_SPLICE	YES	6	13	0.89	0.79	0.3931	0.1241	AGAP3->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_3,chr7:150782918-150841523:+,TTC26->chr7:138818490-138876732:+,tetratricopeptide_repeat_domain_26	NCIH1693_LUNG	0.79	0.89	0.5172	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	PAWR--LINC00504	38	10	PAWR	9188	chr12:80007355:-	LINC00504	28840	chr4:14861240:-	ONLY_REF_SPLICE	YES	96	0	0.33	1	0.3931	0.1034	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,LINC00504->chr4:14472089-14889793:-,long_intergenic_non-protein_coding_RNA_504	NCIH1693_LUNG	0.33	1	0.4965	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	WIPF2--FMNL1	37	8	WIPF2	1189	chr17:38375744:+	FMNL1	21700	chr17:43307971:+	ONLY_REF_SPLICE	YES	5	5	0.9	0.9	0.3827	0.0828	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,FMNL1->chr17:43298811-43324687:+,formin_like_1	NCIH1693_LUNG	0.9	0.9	0.4655	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	CPEB2--CC2D2A	33	23	CPEB2	5876	chr4:15018902:+	CC2D2A	46759	chr4:15554781:+	ONLY_REF_SPLICE	YES	8	2	0.88	0.97	0.3413	0.2379	{Klijn_CCL:Lung=1},CPEB2->chr4:15004298-15071777:+,cytoplasmic_polyadenylation_element_binding_protein_2,CC2D2A->chr4:15471489-15603180:+,coiled-coil_and_C2_domain_containing_2A	NCIH1693_LUNG	0.88	0.97	0.5792	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	RP11-435B5.4--DAB1	10	64	RP11-435B5.4	4638	chr1:143462284:-	DAB1	32542	chr1:57756838:-	ONLY_REF_SPLICE	YES	40	0	0.65	1	0.1034	0.662	RP11-435B5.4->chr1:143354963-143467632:-,DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-	NCIH1693_LUNG	0.65	1	0.7654	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	GTF2I--GTF2IRD1	24	0	GTF2I	1401	chr7:74072394:+	GTF2IRD1	55548	chr7:73944064:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2483	0	PROTCLUST,LOCAL_REARRANGEMENT:+:[55063],GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi,GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+	NCIH1693_LUNG	1	1	0.2483	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	AGAP3--ZC3HAV1	13	3	AGAP3	2242	chr7:150784159:+	ZC3HAV1	32010	chr7:138774505:-	ONLY_REF_SPLICE	YES	14	15	0.53	0.52	0.1345	0.031	AGAP3->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_3,chr7:150782918-150841523:+,ZC3HAV1->chr7:138728266-138794465:-,zinc_finger_CCCH-type_containing,_antiviral_1	NCIH1693_LUNG	0.52	0.53	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	ITFG1--RP11-417J8.1	11	5	ITFG1	24389	chr16:47271876:-	RP11-417J8.1	33894	chr1:142553293:+	ONLY_REF_SPLICE	YES	37	0	0.3	1	0.1138	0.0517	ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1,RP11-417J8.1->chr1:142553293-142559170:+	NCIH1693_LUNG	0.3	1	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	QKI--PACRG	10	5	QKI	7175	chr6:163876453:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	107	1	0.12	0.94	0.1034	0.0517	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH1693_LUNG	0.12	0.94	0.1551	TRUE	0	0	0	3	0	TRUE	ACH-000021
NCIH1693_LUNG	SCFD2--RP11-340A13.2	8	2	SCFD2	4269	chr4:54179803:-	RP11-340A13.2	18389	chr4:59912141:+	ONLY_REF_SPLICE	YES	19	0	0.34	1	0.0828	0.0207	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,RP11-340A13.2->chr4:59850000-59912677:+	NCIH1693_LUNG	0.34	1	0.1035	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	QKI--PACRG	6	6	QKI	7175	chr6:163876453:+	PACRG	43367	chr6:163733811:+	ONLY_REF_SPLICE	YES	107	0	0.1	1	0.0621	0.0621	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH1693_LUNG	0.1	1	0.1242	TRUE	0	1	0	1	1	TRUE	ACH-000021
NCIH1693_LUNG	AP003900.6--RP11-435B5.4	5	8	AP003900.6	3299	chr21:11174002:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	15	3	0.46	0.81	0.0517	0.0828	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	NCIH1693_LUNG	0.46	0.81	0.1345	TRUE	0	1	0	4	1	TRUE	ACH-000021
NCIH1693_LUNG	ABAT--MSI2	5	3	ABAT	8350	chr16:8829666:+	MSI2	56247	chr17:55607037:+	ONLY_REF_SPLICE	YES	9	25	0.47	0.24	0.0517	0.031	ABAT->4-aminobutyrate_aminotransferase,chr16:8768422-8878432:+,MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2	NCIH1693_LUNG	0.24	0.47	0.0827	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	TBC1D32--RP11-735G4.1	5	1	TBC1D32	27616	chr6:121484116:-	RP11-735G4.1	48502	chr6:125691847:-	ONLY_REF_SPLICE	YES	12	0	0.33	1	0.0517	0.0103	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,RP11-735G4.1->chr6:125691357-125695470:-	NCIH1693_LUNG	0.33	1	0.062	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	PLD5--KIF26B	5	0	PLD5	5051	chr1:242451664:-	KIF26B	28484	chr1:245530136:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	PLD5->chr1:242246288-242687998:-,phospholipase_D_family_member_5,KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B	NCIH1693_LUNG	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	TRIM37--TMEM186	4	4	TRIM37	2583	chr17:57181654:-	TMEM186	39614	chr16:8874618:-	ONLY_REF_SPLICE	YES	106	6	0.07	0.57	0.0414	0.0414	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,TMEM186->chr16:8874241-8891505:-,transmembrane_protein_186	NCIH1693_LUNG	0.07	0.57	0.0828	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	TRIM37--TMEM186	3	6	TRIM37	2583	chr17:57181654:-	TMEM186	38931	chr16:8875301:-	ONLY_REF_SPLICE	YES	106	0	0.08	1	0.031	0.0621	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,TMEM186->chr16:8874241-8891505:-,transmembrane_protein_186	NCIH1693_LUNG	0.08	1	0.0931	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	EXOC1--KIAA1211	4	1	EXOC1	11814	chr4:56750094:+	KIAA1211	27656	chr4:57045450:+	ONLY_REF_SPLICE	YES	53	0	0.09	1	0.0414	0.0103	EXOC1->chr4:56719782-56771200:+,exocyst_complex_component_1,KIAA1211->KIAA1211,chr4:57036361-57194791:+	NCIH1693_LUNG	0.09	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	TRIM37--TMEM186	3	5	TRIM37	2583	chr17:57181654:-	TMEM186	38990	chr16:8875242:-	INCL_NON_REF_SPLICE	YES	106	3	0.07	0.73	0.031	0.0517	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,TMEM186->chr16:8874241-8891505:-,transmembrane_protein_186	NCIH1693_LUNG	0.07	0.73	0.0827	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	ANP32B--SEPT7	4	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	NCIH1693_LUNG	1	1	0.0414	TRUE	1	1	0	18	1	TRUE	ACH-000021
NCIH1693_LUNG	CCDC7--INADL	3	3	CCDC7	9652	chr10:32762951:+	INADL	57151	chr1:62380259:+	ONLY_REF_SPLICE	YES	10	21	0.38	0.22	0.031	0.031	CCDC7->chr10:32735068-32863492:+,coiled-coil_domain_containing_7,INADL->Oncogene{Bushman},chr1:62208149-62629592:+	NCIH1693_LUNG	0.22	0.38	0.062	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	BCRP2--IKZF3	3	1	BCRP2	1211	chr22:21457515:+	IKZF3	12538	chr17:37988404:-	ONLY_REF_SPLICE	YES	15	0	0.21	1	0.031	0.0103	BCRP2->Oncogene{Bushman},breakpoint_cluster_region_pseudogene_2,chr22:21457305-21476574:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	NCIH1693_LUNG	0.21	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	THRA--ZPBP2	3	1	THRA	6927	chr17:38230794:+	ZPBP2	23019	chr17:38026947:+	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.031	0.0103	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,ZPBP2->chr17:38024417-38034149:+,zona_pellucida_binding_protein_2	NCIH1693_LUNG	0.22	1	0.0413	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	G3BP1--CTD-2410N18.5	3	0	G3BP1	1992	chr5:151151597:+	CTD-2410N18.5	27988	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTD-2410N18.5->chr5:133502861-133561762:-	NCIH1693_LUNG	1	1	0.031	TRUE	0	0	0	4	0	TRUE	ACH-000021
NCIH1693_LUNG	PLD5--KIF26B	3	0	PLD5	3875	chr1:242511408:-	KIF26B	28484	chr1:245530136:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	PLD5->chr1:242246288-242687998:-,phospholipase_D_family_member_5,KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B	NCIH1693_LUNG	1	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	WIPF2--FMNL1	1	8	WIPF2	1189	chr17:38375744:+	FMNL1	20354	chr17:43299275:+	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.0103	0.0828	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,FMNL1->chr17:43298811-43324687:+,formin_like_1	NCIH1693_LUNG	0.64	1	0.0931	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	CCDC7--INADL	2	3	CCDC7	9652	chr10:32762951:+	INADL	56040	chr1:62374044:+	ONLY_REF_SPLICE	YES	10	16	0.33	0.24	0.0207	0.031	CCDC7->chr10:32735068-32863492:+,coiled-coil_domain_containing_7,INADL->Oncogene{Bushman},chr1:62208149-62629592:+	NCIH1693_LUNG	0.24	0.33	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	AP001347.6--ANKRD20A11P	2	1	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	18278	chr21:15330506:-	ONLY_REF_SPLICE	YES	16	3	0.16	0.5	0.0207	0.0103	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	NCIH1693_LUNG	0.16	0.5	0.031	TRUE	0	0	0	3	0	TRUE	ACH-000021
NCIH1693_LUNG	CCDC7--INADL	2	1	CCDC7	4999	chr10:32745262:+	INADL	56040	chr1:62374044:+	ONLY_REF_SPLICE	YES	38	16	0.07	0.16	0.0207	0.0103	CCDC7->chr10:32735068-32863492:+,coiled-coil_domain_containing_7,INADL->Oncogene{Bushman},chr1:62208149-62629592:+	NCIH1693_LUNG	0.07	0.16	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	CHD2--SRSF1	2	0	CHD2	6529	chr15:93444529:+	SRSF1	62155	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	NCIH1693_LUNG	1	1	0.0207	TRUE	1	2	0	9	0	TRUE	ACH-000021
NCIH1693_LUNG	MGMT--GLRX3	2	0	MGMT	2250	chr10:131334641:+	GLRX3	16672	chr10:131943475:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	MGMT->O-6-methylguanine-DNA_methyltransferase,chr10:131265448-131566271:+,GLRX3->chr10:131934663-131982785:+,glutaredoxin_3	NCIH1693_LUNG	1	1	0.0207	TRUE	1	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	NEK6--PSMB7	2	0	NEK6	1480	chr9:127020364:+	PSMB7	29279	chr9:127146935:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=9;pct=0.10%;dist=Liver=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Brain_-_Hypothalamus=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:+:-:[159],NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	NCIH1693_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	RP11-435B5.4--HSD17B12	2	0	RP11-435B5.4	2843	chr1:143465380:-	HSD17B12	35421	chr11:43819870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	RP11-435B5.4->chr1:143354963-143467632:-,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	NCIH1693_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	SLC25A20--KIF2C	2	0	SLC25A20	1304	chr3:48936123:-	KIF2C	19241	chr1:45218804:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	SLC25A20->chr3:48894369-48936426:-,solute_carrier_family_25_member_20,KIF2C->chr1:45205490-45233439:+,kinesin_family_member_2C	NCIH1693_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	CCDC7--INADL	1	3	CCDC7	10724	chr10:32770710:+	INADL	56040	chr1:62374044:+	ONLY_REF_SPLICE	YES	8	16	0.33	0.2	0.0103	0.031	CCDC7->chr10:32735068-32863492:+,coiled-coil_domain_containing_7,INADL->Oncogene{Bushman},chr1:62208149-62629592:+	NCIH1693_LUNG	0.2	0.33	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	CCDC7--INADL	1	3	CCDC7	10724	chr10:32770710:+	INADL	57151	chr1:62380259:+	ONLY_REF_SPLICE	YES	8	21	0.33	0.16	0.0103	0.031	CCDC7->chr10:32735068-32863492:+,coiled-coil_domain_containing_7,INADL->Oncogene{Bushman},chr1:62208149-62629592:+	NCIH1693_LUNG	0.16	0.33	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	CCDC7--INADL	1	2	CCDC7	9652	chr10:32762951:+	INADL	58231	chr1:62393402:+	ONLY_REF_SPLICE	YES	10	14	0.23	0.18	0.0103	0.0207	CCDC7->chr10:32735068-32863492:+,coiled-coil_domain_containing_7,INADL->Oncogene{Bushman},chr1:62208149-62629592:+	NCIH1693_LUNG	0.18	0.23	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	SCFD2--RP11-340A13.2	1	2	SCFD2	4269	chr4:54179803:-	RP11-340A13.2	17284	chr4:59906305:+	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0103	0.0207	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,RP11-340A13.2->chr4:59850000-59912677:+	NCIH1693_LUNG	0.14	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	AP001347.6--ANKRD20A11P	1	1	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	19348	chr21:15326471:-	ONLY_REF_SPLICE	NO	16	1	0.11	0.67	0.0103	0.0103	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	NCIH1693_LUNG	0.11	0.67	0.0206	TRUE	0	1	0	3	1	TRUE	ACH-000021
NCIH1693_LUNG	AP001347.6--ANKRD20A11P	1	1	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	13921	chr21:15342431:-	ONLY_REF_SPLICE	YES	16	3	0.11	0.4	0.0103	0.0103	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	NCIH1693_LUNG	0.11	0.4	0.0206	TRUE	0	1	0	4	1	TRUE	ACH-000021
NCIH1693_LUNG	ZNF573--CLTCL1	1	1	ZNF573	1240	chr19:38307701:-	CLTCL1	47491	chr22:19189004:-	ONLY_REF_SPLICE	YES	5	2	0.29	0.5	0.0103	0.0103	ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573,CLTCL1->Oncogene{Bushman},chr22:19166986-19279239:-,clathrin_heavy_chain_like_1	NCIH1693_LUNG	0.29	0.5	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000021
SNU489_CENTRAL_NERVOUS_SYSTEM	ULK2--AC084809.3	54	31	ULK2	5783	chr17:19753055:-	AC084809.3	40821	chr17:31233209:+	ONLY_REF_SPLICE	YES	18	1	0.83	0.99	0.5541	0.3181	ULK2->chr17:19674142-19771249:-,unc-51_like_autophagy_activating_kinase_2,AC084809.3->chr17:31232680-31233602:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.83	0.99	0.8722	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	IGSF3--GGT1	51	15	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	13	4	0.84	0.94	0.5233	0.1539	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	SNU489_CENTRAL_NERVOUS_SYSTEM	0.84	0.94	0.6772	TRUE	1	1	0	8	1	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-353N4.6--RP11-403I13.7	25	8	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	51	0	0.39	1	0.2565	0.0821	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.3386	TRUE	1	0	0	4	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	FTO--RP11-166B2.1	19	0	FTO	1267	chr16:53738141:+	RP11-166B2.1	33744	chr16:12050094:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.195	0	FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated,RP11-166B2.1->chr16:12021230-12070500:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.195	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	ULK2--AC084809.3	9	32	ULK2	5783	chr17:19753055:-	AC084809.3	40293	chr17:31232681:+	INCL_NON_REF_SPLICE	YES	18	0	0.69	1	0.0923	0.3283	ULK2->chr17:19674142-19771249:-,unc-51_like_autophagy_activating_kinase_2,AC084809.3->chr17:31232680-31233602:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.69	1	0.4206	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	FTO--RP11-166B2.1	10	0	FTO	1267	chr16:53738141:+	RP11-166B2.1	32608	chr16:12057883:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1026	0	FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated,RP11-166B2.1->chr16:12021230-12070500:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-353N4.6--RP11-403I13.7	3	9	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	55	0	0.18	1	0.0308	0.0923	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.18	1	0.1231	TRUE	1	0	0	4	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	POU2F1--ILDR2	5	0	POU2F1	1130	chr1:167190195:+	ILDR2	44237	chr1:166927338:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ILDR2->chr1:166882443-166944719:-,immunoglobulin_like_domain_containing_receptor_2	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0513	TRUE	0	0	0	2	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	ALDOA--EEF2	4	0	ALDOA	7433	chr16:30077205:+	EEF2	15013	chr19:3985461:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.05%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.041	TRUE	0	0	0	2	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	CENPA--HADHA	2	0	CENPA	1138	chr2:26987294:+	HADHA	23561	chr2:26424189:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CENPA->centromere_protein_A,chr2:26987157-27023935:+,HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	COL6A1--COL3A1	2	0	COL6A1	9672	chr21:47412312:+	COL3A1	34033	chr2:189859772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	IMMP2L--CUX1	2	0	IMMP2L	1667	chr7:111201907:-	CUX1	64915	chr7:101916637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	KIAA0319L--SHARPIN	2	0	KIAA0319L	6988	chr1:35972213:-	SHARPIN	37136	chr8:145158128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,SHARPIN->SHANK_associated_RH_domain_interactor,chr8:145153536-145163027:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RCBTB1--PHF11	2	0	RCBTB1	3926	chr13:50140754:-	PHF11	25576	chr13:50080771:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=2},LOCAL_INVERSION:-:+:[2959],RCBTB1->RCC1_and_BTB_domain_containing_protein_1,chr13:50106082-50159719:-,PHF11->PHD_finger_protein_11,chr13:50069746-50103123:+	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	TBCA--AP3B1	2	0	TBCA	2304	chr5:77072029:-	AP3B1	20537	chr5:77477486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	1	0	2	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	UBL3--SLC7A1	2	0	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	1	5	0	8	1	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	NCOA3--EYA2	1	1	NCOA3	8220	chr20:46256767:+	EYA2	46927	chr20:45808446:+	ONLY_REF_SPLICE	YES	34	1	0.06	0.67	0.0103	0.0103	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.06	0.67	0.0206	TRUE	0	0	0	2	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-353N4.6--RP11-403I13.7	1	1	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	16052	chr1:149286755:+	ONLY_REF_SPLICE	YES	51	3	0.04	0.4	0.0103	0.0103	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.04	0.4	0.0206	TRUE	0	0	0	3	0	TRUE	ACH-000543
SNU349_KIDNEY	CYR61--ACTB	67	0	CYR61	3134	chr1:86048577:+	ACTB	12895	chr7:5567955:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5998	0	GTEx&tcga_normals:3/3694=0.08%,CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU349_KIDNEY	1	1	0.5998	TRUE	0	0	0	2	0	TRUE	ACH-000907
SNU349_KIDNEY	ARPP19--GNB5	20	1	ARPP19	5297	chr15:52849297:-	GNB5	19024	chr15:52442122:-	ONLY_REF_SPLICE	YES	159	31	0.12	0.4	0.179	0.009	ARPP19->cAMP_regulated_phosphoprotein_19kDa,chr15:52839242-52862080:-,GNB5->G_protein_subunit_beta_5,chr15:52413117-52483566:-	SNU349_KIDNEY	0.12	0.4	0.188	TRUE	0	0	0	1	0	TRUE	ACH-000907
SNU349_KIDNEY	SLC6A3--LPCAT1	9	0	SLC6A3	1083	chr5:1445463:-	LPCAT1	24700	chr5:1501718:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0806	0	LOCAL_REARRANGEMENT:-:[11050],SLC6A3->Oncogene{Bushman},chr5:1392909-1445545:-,solute_carrier_family_6_member_3,LPCAT1->chr5:1456595-1524092:-,lysophosphatidylcholine_acyltransferase_1	SNU349_KIDNEY	1	1	0.0806	TRUE	0	3	0	1	0	TRUE	ACH-000907
SNU349_KIDNEY	RP5-1070A16.1--SNX7	7	2	RP5-1070A16.1	2165	chr1:98715102:+	SNX7	11398	chr1:99150441:+	ONLY_REF_SPLICE	YES	3	79	0.75	0.1	0.0627	0.0179	RP5-1070A16.1->chr1:98676303-98738214:+,SNX7->chr1:99127236-99226056:+,sorting_nexin_7	SNU349_KIDNEY	0.1	0.75	0.0806	TRUE	0	2	0	2	2	TRUE	ACH-000907
SNU349_KIDNEY	PSAP--GAPDH	5	0	PSAP	8532	chr10:73581669:-	GAPDH	20232	chr12:6646882:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SNU349_KIDNEY	1	1	0.0448	TRUE	0	0	0	8	0	TRUE	ACH-000907
SNU349_KIDNEY	PSAP--GAPDH	4	0	PSAP	8522	chr10:73581679:-	GAPDH	20181	chr12:6646831:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SNU349_KIDNEY	1	1	0.0358	TRUE	0	0	0	8	0	TRUE	ACH-000907
SNU349_KIDNEY	AC010441.1--SYNPO	2	0	AC010441.1	1668	chr5:150158534:+	SYNPO	19833	chr5:150035966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	AC010441.1->chr5:150157867-150176297:+,SYNPO->chr5:149980642-150038782:+,synaptopodin	SNU349_KIDNEY	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000907
SNU349_KIDNEY	TNFRSF1A--PTMS	2	0	TNFRSF1A	1339	chr12:6450942:-	PTMS	13541	chr12:6878769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	TNFRSF1A->Oncogene{Bushman},chr12:6437923-6451280:-,tumor_necrosis_factor_receptor_superfamily_member_1A,PTMS->chr12:6874682-6880116:+,parathymosin	SNU349_KIDNEY	1	1	0.0179	TRUE	0	0	0	2	0	TRUE	ACH-000907
SQ1_LUNG	ITGB1--DIDO1	122	0	ITGB1	23881	chr10:33200436:-	DIDO1	43165	chr20:61528171:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8456	0	ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1,DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1	SQ1_LUNG	1	1	0.8456	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	TSSC1--AC019172.2	50	16	TSSC1	12705	chr2:3261070:-	AC019172.2	25905	chr2:3894744:+	ONLY_REF_SPLICE	YES	58	0	0.53	1	0.3466	0.1109	TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,AC019172.2->chr2:3891774-3895001:+	SQ1_LUNG	0.53	1	0.4575	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	LSM14A--PKHD1	13	2	LSM14A	1260	chr19:34663668:+	PKHD1	55197	chr6:51824824:-	ONLY_REF_SPLICE	YES	64	0	0.19	1	0.0901	0.0139	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	SQ1_LUNG	0.19	1	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	TSSC1--AC019172.2	3	16	TSSC1	12703	chr2:3261072:-	AC019172.2	25906	chr2:3894745:+	INCL_NON_REF_SPLICE	YES	58	0	0.25	1	0.0208	0.1109	TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,AC019172.2->chr2:3891774-3895001:+	SQ1_LUNG	0.25	1	0.1317	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	ADK--AP3M1	5	0	ADK	4621	chr10:75960596:+	AP3M1	22249	chr10:75898140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:+:-:[139],ADK->adenosine_kinase,chr10:75910960-76469061:+,AP3M1->adaptor_related_protein_complex_3_mu_1_subunit,chr10:75881524-75910821:-	SQ1_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	TSSC1--AC019172.2	3	5	TSSC1	4895	chr2:3341788:-	AC019172.2	25905	chr2:3894744:+	ONLY_REF_SPLICE	YES	86	0	0.09	1	0.0208	0.0347	TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,AC019172.2->chr2:3891774-3895001:+	SQ1_LUNG	0.09	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	TACSTD2--ILF3	4	0	TACSTD2	1762	chr1:59042405:-	ILF3	17534	chr19:10794099:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	TACSTD2->Oncogene{Bushman},chr1:59041099-59043166:-,tumor-associated_calcium_signal_transducer_2,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	SQ1_LUNG	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	ADK--AP3M1	3	0	ADK	4621	chr10:75960596:+	AP3M1	21700	chr10:75898689:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:+:-:[139],ADK->adenosine_kinase,chr10:75910960-76469061:+,AP3M1->adaptor_related_protein_complex_3_mu_1_subunit,chr10:75881524-75910821:-	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	BRPF3--KRT8	3	0	BRPF3	3363	chr6:36168554:+	KRT8	31933	chr12:53293704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	BRPF3->bromodomain_and_PHD_finger_containing_3,chr6:36164521-36200567:+,KRT8->chr12:53290977-53343738:-,keratin_8	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	CDKN2AIP--WWC2	3	0	CDKN2AIP	2757	chr4:184367500:+	WWC2	33213	chr4:184233494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CDKN2AIP->CDKN2A_interacting_protein,chr4:184365744-184369351:+,WWC2->WW_and_C2_domain_containing_2,chr4:184020446-184241930:+	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	IFI27L2--MARK2	3	0	IFI27L2	3327	chr14:94594264:-	MARK2	26712	chr11:63677602:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	IFI27L2->chr14:94594116-94596590:-,interferon_alpha_inducible_protein_27_like_2,MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	LSM14A--PKHD1	3	0	LSM14A	1260	chr19:34663668:+	PKHD1	56354	chr6:51799120:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	MISP--GJC1	3	0	MISP	1046	chr19:751171:+	GJC1	14840	chr17:42884837:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	MISP->chr19:751126-764319:+,mitotic_spindle_positioning,GJC1->chr17:42875816-42908184:-,gap_junction_protein_gamma_1	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	MTMR12--UBR5	3	0	MTMR12	7756	chr5:32268807:-	UBR5	27497	chr8:103373854:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	MTMR12->chr5:32227100-32313115:-,myotubularin_related_protein_12,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	PTMAP5--G6PD	3	0	PTMAP5	1382	chr13:82264427:+	G6PD	11075	chrX:153761018:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	PTMAP5->chr13:82264046-82265207:+,prothymosin,_alpha_pseudogene_5,G6PD->chrX:153759606-153775787:-,glucose-6-phosphate_dehydrogenase	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RP11-318K12.1--MYH9	3	0	RP11-318K12.1	7284	chr9:66699512:-	MYH9	33314	chr22:36701148:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	RP11-318K12.1->chr9:66693277-66721073:-,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RPL4--COX7B	3	0	RPL4	5210	chr15:66795741:-	COX7B	15678	chrX:77158166:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4,COX7B->chrX:77154935-77162870:+,cytochrome_c_oxidase_subunit_7B	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	SNRPA--FOXJ3	3	0	SNRPA	6240	chr19:41268874:+	FOXJ3	27363	chr1:42647645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	SNRPA->chr19:41256542-41271294:+,small_nuclear_ribonucleoprotein_polypeptide_A,FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	TGM2--NONO	3	0	TGM2	18664	chr20:36758562:-	NONO	35116	chrX:70520486:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	TGM2->chr20:36756863-36794980:-,transglutaminase_2,NONO->Oncogene{Bushman},chrX:70503042-70521018:+,non-POU_domain_containing,_octamer-binding	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	ABI2--RHOT1	2	0	ABI2	21157	chr2:204291992:+	RHOT1	45888	chr17:30498062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	ABI2->abl-interactor_2,chr2:204192942-204312446:+,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	ADAM10--LACTB	2	0	ADAM10	22375	chr15:58902496:-	LACTB	36972	chr15:63433479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	ADAM10->ADAM_metallopeptidase_domain_10,chr15:58887403-59042177:-,LACTB->Oncogene{Bushman},chr15:63413999-63434260:+,lactamase_beta	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	BSG--CSNK1G2	2	0	BSG	2405	chr19:572701:+	CSNK1G2	20194	chr19:1969507:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	CHAMP1--SF3B3	2	0	CHAMP1	2254	chr13:115086707:+	SF3B3	15983	chr16:70564648:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	CHAMP1->chr13:115079988-115092796:+,chromosome_alignment_maintaining_phosphoprotein_1,SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	DCBLD2--DGKH	2	0	DCBLD2	5444	chr3:98600384:-	DGKH	55268	chr13:42780175:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,DGKH->chr13:42614176-42830714:+,diacylglycerol_kinase_eta	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	DNAJC14--KDM5B	2	0	DNAJC14	6510	chr12:56216356:-	KDM5B	15104	chr1:202746222:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	DNAJC14->DnaJ_heat_shock_protein_family_(Hsp40)_member_C14,chr12:56214744-56224608:-,KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	FANCC--CPSF7	2	0	FANCC	1184	chr9:98079808:-	CPSF7	29556	chr11:61196762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-,CPSF7->chr11:61170121-61197503:-,cleavage_and_polyadenylation_specific_factor_7	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	FBXL13--EZH2	2	0	FBXL13	10681	chr7:102613597:-	EZH2	46043	chr7:148512638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	FOXN2--ZBTB7B	2	0	FOXN2	1178	chr2:48541953:+	ZBTB7B	19173	chr1:154987131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	FOXN2->chr2:48541776-48606433:+,forkhead_box_N2,ZBTB7B->chr1:154975127-154990998:+,zinc_finger_and_BTB_domain_containing_7B	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	HMHA1--UBC	2	0	HMHA1	1241	chr19:1066162:+	UBC	23043	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	HMHA1->chr19:1065922-1086627:+,histocompatibility_(minor)_HA-1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	ILDR1--FBN1	2	0	ILDR1	1185	chr3:121740867:-	FBN1	21594	chr15:48888575:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	ILDR1->chr3:121706170-121741051:-,immunoglobulin_like_domain_containing_receptor_1,FBN1->chr15:48700503-48938046:-,fibrillin_1	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	KIAA0247--FAM208B	2	0	KIAA0247	1233	chr14:70078545:+	FAM208B	19367	chr10:5751493:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	KIAA0247->chr14:70078313-70181859:+,FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	LINC00472--SMYD3	2	0	LINC00472	4804	chr6:72126113:-	SMYD3	35676	chr1:246027188:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	LINC00472->chr6:72054047-72130472:-,long_intergenic_non-protein_coding_RNA_472,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	MAP4K3--HELLS	2	0	MAP4K3	11315	chr2:39552659:-	HELLS	48363	chr10:96331145:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	MAP4K3->chr2:39476407-39664453:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_3,HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	MTCH1--KRT7	2	0	MTCH1	3638	chr6:36946281:-	KRT7	18891	chr12:52632464:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	MTCH1->chr6:36935917-36954074:-,mitochondrial_carrier_1,KRT7->chr12:52626304-52645970:+,keratin_7	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	NDUFV3--SPC25	2	0	NDUFV3	5809	chr21:44317157:+	SPC25	21043	chr2:169733894:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,SPC25->SPC25,_NDC80_kinetochore_complex_component,chr2:169690642-169769881:-	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	NOP14--EIF4H	2	0	NOP14	4472	chr4:2956151:-	EIF4H	27006	chr7:73609499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	NOP14->NOP14_nucleolar_protein,chr4:2939660-2965112:-,EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	POLE--UBE2I	2	0	POLE	1112	chr12:133263840:-	UBE2I	48866	chr16:1364021:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	PRTFDC1--CCNB1IP1	2	0	PRTFDC1	3368	chr10:25226113:-	CCNB1IP1	27934	chr14:20781960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	PRTFDC1->chr10:25137536-25241533:-,phosphoribosyl_transferase_domain_containing_1,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RBMS1--REV1	2	0	RBMS1	1506	chr2:161349800:-	REV1	32717	chr2:100081447:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RPL23A--ZNF530	2	0	RPL23A	4787	chr17:27050658:+	ZNF530	16147	chr19:58123871:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a,ZNF530->chr19:58111253-58124090:+,zinc_finger_protein_530	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RRN3--RBM48	2	0	RRN3	2472	chr16:15186366:-	RBM48	29009	chr7:92166165:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	RRN3->RRN3_homolog,_RNA_polymerase_I_transcription_factor,chr16:15153879-15188174:-,RBM48->RNA_binding_motif_protein_48,chr7:92158087-92167319:+	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	SULT1A1--SRP9	2	0	SULT1A1	2566	chr16:28631384:-	SRP9	15371	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	SULT1A1->chr16:28616903-28634946:-,sulfotransferase_family_1A_member_1,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	TKT--CD47	2	0	TKT	1217	chr3:53289852:-	CD47	22420	chr3:107799191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	TKT->chr3:53258723-53290068:-,transketolase,CD47->CD47_molecule,chr3:107762145-107809872:-	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	ZNF440--PARP14	2	0	ZNF440	1167	chr19:11925265:+	PARP14	34366	chr3:122446659:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	ZNF440->chr19:11925099-11946016:+,zinc_finger_protein_440,PARP14->chr3:122399465-122449687:+,poly(ADP-ribose)_polymerase_family_member_14	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RLF--MYCL	1	2	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	NO	10	0	0.23	1	0.0069	0.0139	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	SQ1_LUNG	0.23	1	0.0208	TRUE	0	0	0	10	0	TRUE	ACH-000553
PANC0327_PANCREAS	LRRC1--NDRG3	127	61	LRRC1	3037	chr6:53707025:+	NDRG3	35921	chr20:35284935:-	ONLY_REF_SPLICE	YES	41	66	0.82	0.74	1.5885	0.763	LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1,NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-	PANC0327_PANCREAS	0.74	0.82	2.3515	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	GATAD2A--CTR9	35	11	GATAD2A	9305	chr19:19576423:+	CTR9	27323	chr11:10774219:+	ONLY_REF_SPLICE	YES	103	72	0.31	0.39	0.4378	0.1376	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,CTR9->CTR9_homolog,_Paf1/RNA_polymerase_II_complex_component,chr11:10772534-10801290:+	PANC0327_PANCREAS	0.31	0.39	0.5754	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	GLRB--LRBA	24	19	GLRB	6901	chr4:158043549:+	LRBA	69823	chr4:151358016:-	ONLY_REF_SPLICE	YES	11	24	0.8	0.64	0.3002	0.2377	{Klijn_CCL:Pancreas=1},GLRB->chr4:157997209-158093242:+,glycine_receptor_beta,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	PANC0327_PANCREAS	0.64	0.8	0.5379	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	PSMC4--RXRB	18	2	PSMC4	4086	chr19:40480735:+	RXRB	11522	chr6:33167193:-	ONLY_REF_SPLICE	YES	178	9	0.1	0.69	0.2251	0.025	PSMC4->chr19:40476912-40487348:+,proteasome_26S_subunit,_ATPase_4,RXRB->chr6:33161365-33168630:-,retinoid_X_receptor_beta	PANC0327_PANCREAS	0.1	0.69	0.2501	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	MYO6--IMPG1	9	2	MYO6	36985	chr6:76624777:+	IMPG1	64151	chr6:76633423:-	INCL_NON_REF_SPLICE	YES	135	0	0.08	1	0.1126	0.025	LOCAL_INVERSION:+:-:[1578],MYO6->chr6:76458909-76629254:+,myosin_VI,IMPG1->chr6:76630832-76782395:-,interphotoreceptor_matrix_proteoglycan_1	PANC0327_PANCREAS	0.08	1	0.1376	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	PTPRM--MIB1	7	5	PTPRM	11589	chr18:7955412:+	MIB1	76887	chr18:19444487:+	ONLY_REF_SPLICE	YES	6	29	0.67	0.29	0.0876	0.0625	PTPRM->chr18:7566780-8406859:+,protein_tyrosine_phosphatase,_receptor_type_M,MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1	PANC0327_PANCREAS	0.29	0.67	0.1501	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	LRRC1--NDRG3	2	24	LRRC1	3037	chr6:53707025:+	NDRG3	38133	chr20:35282104:-	ONLY_REF_SPLICE	YES	41	85	0.39	0.23	0.025	0.3002	LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1,NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-	PANC0327_PANCREAS	0.23	0.39	0.3252	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	LRRC1--NDRG3	2	20	LRRC1	1919	chr6:53660213:+	NDRG3	35921	chr20:35284935:-	ONLY_REF_SPLICE	YES	46	66	0.32	0.25	0.025	0.2502	LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1,NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-	PANC0327_PANCREAS	0.25	0.32	0.2752	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	LRIG1--IFLTD1	4	1	LRIG1	6595	chr3:66501983:-	IFLTD1	44159	chr12:25656734:-	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.05	0.0125	LRIG1->Oncogene{Bushman},chr3:66429221-66551687:-,leucine-rich_repeats_and_immunoglobulin_like_domains_1,IFLTD1->chr12:25562241-25801513:-	PANC0327_PANCREAS	0.36	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	PTPRG--ZNF546	3	2	PTPRG	16106	chr3:62177327:+	ZNF546	54740	chr19:40512003:+	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0375	0.025	{Klijn_CCL:Pancreas=1},PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,ZNF546->chr19:40490041-40523514:+,zinc_finger_protein_546	PANC0327_PANCREAS	0.56	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	RP11-281P23.1--RP11-281P23.2	3	1	RP11-281P23.1	1582	chr4:11471455:+	RP11-281P23.2	13426	chr4:11771933:+	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0375	0.0125	RP11-281P23.1->chr4:11470874-11479820:+,RP11-281P23.2->chr4:11627338-11815582:+	PANC0327_PANCREAS	0.44	1	0.05	TRUE	0	1	1	4	1	TRUE	ACH-000139
PANC0327_PANCREAS	SNIP1--DNALI1	2	2	SNIP1	2400	chr1:38018246:-	DNALI1	17875	chr1:38027682:+	ONLY_REF_SPLICE	NO	38	22	0.1	0.15	0.025	0.025	{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[2617],SNIP1->Smad_nuclear_interacting_protein_1,chr1:38000050-38019903:-,DNALI1->chr1:38022520-38032458:+,dynein_axonemal_light_intermediate_chain_1	PANC0327_PANCREAS	0.1	0.15	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	LAMB3--RP1-28O10.1	2	0	LAMB3	2550	chr1:209824262:-	RP1-28O10.1	25983	chr1:209836406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:-:[8898],LAMB3->chr1:209788215-209825811:-,laminin_subunit_beta_3,RP1-28O10.1->chr1:209834709-209897470:-	PANC0327_PANCREAS	1	1	0.025	TRUE	0	1	0	1	1	TRUE	ACH-000139
PANC0327_PANCREAS	MAML2--CEP57	2	0	MAML2	2798	chr11:96074547:-	CEP57	19069	chr11:95532396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx_v2:{count=3;pct=0.03%;dist=Ovary=1,Thyroid=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Urinary_Bladder=1},MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,CEP57->centrosomal_protein_57,chr11:95523129-95565857:+	PANC0327_PANCREAS	1	1	0.025	TRUE	0	1	0	3	1	TRUE	ACH-000139
PANC0327_PANCREAS	PC--PAFAH1B2	2	0	PC	3864	chr11:66719901:-	PAFAH1B2	36123	chr11:117046622:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2	PANC0327_PANCREAS	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	LRRC1--SLA2	1	1	LRRC1	1919	chr6:53660213:+	SLA2	22991	chr20:35269781:-	ONLY_REF_SPLICE	YES	46	0	0.04	1	0.0125	0.0125	LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1,SLA2->Src-like-adaptor_2,chr20:35240721-35274619:-	PANC0327_PANCREAS	0.04	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000139
HS695T_SKIN	PDS5B--TMTC4	121	7	PDS5B	1167	chr13:33160730:+	TMTC4	67554	chr13:101258681:-	ONLY_REF_SPLICE	YES	5	17	0.96	0.88	1.1448	0.0662	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,TMTC4->chr13:101256181-101327347:-,transmembrane_and_tetratricopeptide_repeat_containing_4	HS695T_SKIN	0.88	0.96	1.211	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	GOLGA4--MLH1	103	17	GOLGA4	19216	chr3:37357089:+	MLH1	57056	chr3:37070275:+	ONLY_REF_SPLICE	YES	0	62	1	0.66	0.9745	0.1608	YOSHIHARA_TCGA_num_samples[BRCA:1|PRAD:1],GOLGA4->chr3:37284668-37408242:+,golgin_A4,MLH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr3:37034823-37107380:+,mutL_homolog_1	HS695T_SKIN	0.66	1	1.1353	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	RP11-417J8.3--MLLT10P1	54	16	RP11-417J8.3	3008	chr1:142621059:+	MLLT10P1	15643	chr20:29638051:-	INCL_NON_REF_SPLICE	YES	22	0	0.76	1	0.5109	0.1514	RP11-417J8.3->chr1:142618769-142729975:+,MLLT10P1->chr20:29637799-29638060:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10_pseudogene_1	HS695T_SKIN	0.76	1	0.6623	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	GPC4--HS6ST2	22	11	GPC4	1685	chrX:132548834:-	HS6ST2	24267	chrX:131763121:-	ONLY_REF_SPLICE	YES	79	84	0.29	0.28	0.2081	0.1041	GPC4->chrX:132434131-132549518:-,glypican_4,HS6ST2->chrX:131760044-132095423:-,heparan_sulfate_6-O-sulfotransferase_2	HS695T_SKIN	0.28	0.29	0.3122	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	DENND4A--SYCP2	13	5	DENND4A	16921	chr15:65998429:-	SYCP2	64691	chr20:58456078:-	ONLY_REF_SPLICE	YES	9	43	0.67	0.3	0.123	0.0473	{Klijn_CCL:Skin=1},DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,SYCP2->chr20:58438618-58508710:-,synaptonemal_complex_protein_2	HS695T_SKIN	0.3	0.67	0.1703	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	RAB31--PLIN2	12	6	RAB31	1280	chr18:9708441:+	PLIN2	36516	chr9:19108745:-	ONLY_REF_SPLICE	YES	8	14	0.69	0.56	0.1135	0.0568	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,PLIN2->chr9:19108373-19149288:-,perilipin_2	HS695T_SKIN	0.56	0.69	0.1703	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	RP11-820L6.1--DHFR	10	0	RP11-820L6.1	10204	chr11:122051044:-	DHFR	17946	chr5:79933828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0946	0	RP11-820L6.1->chr11:122026130-122293579:-,DHFR->chr5:79922047-79950802:-,dihydrofolate_reductase	HS695T_SKIN	1	1	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	RAB31--HAUS6	8	3	RAB31	1280	chr18:9708441:+	HAUS6	24421	chr9:19096767:-	ONLY_REF_SPLICE	YES	8	102	0.58	0.1	0.0757	0.0284	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,HAUS6->HAUS_augmin_like_complex_subunit_6,chr9:19053141-19103117:-	HS695T_SKIN	0.1	0.58	0.1041	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	SEPT4--CALR	8	0	SEPT4	12328	chr17:56599084:-	CALR	20651	chr19:13054566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0757	0	SEPT4->chr17:56597611-56618179:-,septin_4,CALR->calreticulin,chr19:13049392-13055303:+	HS695T_SKIN	1	1	0.0757	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	RAB31--PLIN2	6	7	RAB31	2402	chr18:9722860:+	PLIN2	36516	chr9:19108745:-	ONLY_REF_SPLICE	YES	6	14	0.68	0.48	0.0568	0.0662	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,PLIN2->chr9:19108373-19149288:-,perilipin_2	HS695T_SKIN	0.48	0.68	0.123	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	SEPT4--CALR	6	0	SEPT4	12328	chr17:56599084:-	CALR	20616	chr19:13054531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0568	0	SEPT4->chr17:56597611-56618179:-,septin_4,CALR->calreticulin,chr19:13049392-13055303:+	HS695T_SKIN	1	1	0.0568	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	RAB31--PLIN2	4	6	RAB31	2390	chr18:9722848:+	PLIN2	36516	chr9:19108745:-	INCL_NON_REF_SPLICE	YES	6	14	0.62	0.42	0.0378	0.0568	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,PLIN2->chr9:19108373-19149288:-,perilipin_2	HS695T_SKIN	0.42	0.62	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	RAB31--HAUS6	4	3	RAB31	1280	chr18:9708441:+	HAUS6	23273	chr9:19102669:-	INCL_NON_REF_SPLICE	YES	8	161	0.47	0.04	0.0378	0.0284	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,HAUS6->HAUS_augmin_like_complex_subunit_6,chr9:19053141-19103117:-	HS695T_SKIN	0.04	0.47	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	ATL2--HNRNPLL	2	0	ATL2	1143	chr2:38604285:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HS695T_SKIN	1	1	0.0189	TRUE	1	4	0	6	0	TRUE	ACH-000799
HS695T_SKIN	ATL2--HNRNPLL	2	0	ATL2	1143	chr2:38604285:-	HNRNPLL	32959	chr2:38800569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HS695T_SKIN	1	1	0.0189	TRUE	0	1	0	2	1	TRUE	ACH-000799
HS695T_SKIN	C17orf76-AS1--PHF14	2	0	C17orf76-AS1	1593	chr17:16342728:+	PHF14	37718	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	C17orf76-AS1->chr17:16342136-16381992:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HS695T_SKIN	1	1	0.0189	TRUE	0	0	0	5	0	TRUE	ACH-000799
HS695T_SKIN	TOP1MT--MYH9	2	0	TOP1MT	12572	chr8:144411520:-	MYH9	48939	chr22:36701148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	TOP1MT->chr8:144386554-144442149:-,topoisomerase_(DNA)_I,_mitochondrial,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	HS695T_SKIN	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	GOLGA4--MLH1	1	2	GOLGA4	16939	chr3:37343823:+	MLH1	57056	chr3:37070275:+	ONLY_REF_SPLICE	YES	15	62	0.17	0.05	0.0095	0.0189	YOSHIHARA_TCGA_num_samples[BRCA:1|PRAD:1],GOLGA4->chr3:37284668-37408242:+,golgin_A4,MLH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr3:37034823-37107380:+,mutL_homolog_1	HS695T_SKIN	0.05	0.17	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000799
NCIH1944_LUNG	FTL--RPL39	28	0	FTL	1095	chr19:49468652:+	RPL39	5592	chrX:118925593:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2411	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH1944_LUNG	1	1	0.2411	TRUE	0	0	0	3	0	TRUE	ACH-000414
NCIH1944_LUNG	PHF3--PTP4A1	15	2	PHF3	1331	chr6:64346055:+	PTP4A1	31225	chr6:64237724:+	ONLY_REF_SPLICE	YES	11	0	0.61	1	0.1292	0.0172	LOCAL_REARRANGEMENT:+:[52233],PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1	NCIH1944_LUNG	0.61	1	0.1464	TRUE	0	2	0	1	2	TRUE	ACH-000414
NCIH1944_LUNG	RBM47--APBB2	10	8	RBM47	3565	chr4:40546439:-	APBB2	37164	chr4:40947090:-	ONLY_REF_SPLICE	YES	64	5	0.22	0.78	0.0861	0.0689	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH1944_LUNG	0.22	0.78	0.155	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	RBM47--APBB2	10	8	RBM47	3565	chr4:40546439:-	APBB2	37167	chr4:40947087:-	ONLY_REF_SPLICE	YES	64	5	0.22	0.78	0.0861	0.0689	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH1944_LUNG	0.22	0.78	0.155	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	FTL--RPL39	8	0	FTL	1116	chr19:49468673:+	RPL39	5614	chrX:118925571:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH1944_LUNG	1	1	0.0689	TRUE	0	0	0	3	0	TRUE	ACH-000414
NCIH1944_LUNG	FTL--SPP1	8	0	FTL	1141	chr19:49468698:+	SPP1	11373	chr4:88903713:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	GTEx&tcga_normals:5/3694=0.14%,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	NCIH1944_LUNG	1	1	0.0689	TRUE	0	0	0	2	0	TRUE	ACH-000414
NCIH1944_LUNG	HPS5--TLN2	5	1	HPS5	1122	chr11:18343624:-	TLN2	35965	chr15:62939474:+	ONLY_REF_SPLICE	YES	3	3	0.67	0.67	0.0431	0.0086	HPS5->HPS5,_biogenesis_of_lysosomal_organelles_complex_2_subunit_2,chr11:18300223-18343745:-,TLN2->chr15:62682725-63136830:+,talin_2	NCIH1944_LUNG	0.67	0.67	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	HPS5--TLN2	4	4	HPS5	1253	chr11:18343493:-	TLN2	35965	chr15:62939474:+	ONLY_REF_SPLICE	YES	31	3	0.21	0.73	0.0344	0.0344	HPS5->HPS5,_biogenesis_of_lysosomal_organelles_complex_2_subunit_2,chr11:18300223-18343745:-,TLN2->chr15:62682725-63136830:+,talin_2	NCIH1944_LUNG	0.21	0.73	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	HPS5--TLN2	3	5	HPS5	2410	chr11:18339298:-	TLN2	35965	chr15:62939474:+	ONLY_REF_SPLICE	YES	28	3	0.22	0.73	0.0258	0.0431	HPS5->HPS5,_biogenesis_of_lysosomal_organelles_complex_2_subunit_2,chr11:18300223-18343745:-,TLN2->chr15:62682725-63136830:+,talin_2	NCIH1944_LUNG	0.22	0.73	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	FTL--RPL39	4	0	FTL	1108	chr19:49468665:+	RPL39	5606	chrX:118925579:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH1944_LUNG	1	1	0.0344	TRUE	0	0	0	3	0	TRUE	ACH-000414
NCIH1944_LUNG	POLE--FUS	4	0	POLE	1112	chr12:133263840:-	FUS	48055	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1944_LUNG	1	1	0.0344	TRUE	0	0	0	2	0	TRUE	ACH-000414
NCIH1944_LUNG	PHF3--PTP4A1	3	3	PHF3	1331	chr6:64346055:+	PTP4A1	30146	chr6:64231653:+	INCL_NON_REF_SPLICE	YES	11	0	0.35	1	0.0258	0.0258	LOCAL_REARRANGEMENT:+:[52233],PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1	NCIH1944_LUNG	0.35	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	CLCN4--WWC3	3	0	CLCN4	1117	chrX:10125140:+	WWC3	39532	chrX:10096028:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	LOCAL_REARRANGEMENT:+:[12506],CLCN4->chloride_voltage-gated_channel_4,chrX:10125024-10205700:+,WWC3->WWC_family_member_3,chrX:9983602-10112518:+	NCIH1944_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	FTL--S100P	3	0	FTL	1153	chr19:49468710:+	S100P	6393	chr4:6695610:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,S100P->Oncogene{Bushman},S100_calcium_binding_protein_P,chr4:6694796-6698897:+	NCIH1944_LUNG	1	1	0.0258	TRUE	0	0	0	2	0	TRUE	ACH-000414
NCIH1944_LUNG	ADAM9--ASPH	2	0	ADAM9	1292	chr8:38854679:+	ASPH	35141	chr8:62596747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	NCIH1944_LUNG	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	ATP5B--RNF41	2	0	ATP5B	1178	chr12:57039621:-	RNF41	15183	chr12:56604352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,RNF41->chr12:56598285-56615717:-,ring_finger_protein_41	NCIH1944_LUNG	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	ATRX--PGK1	2	0	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	NCIH1944_LUNG	1	1	0.0172	TRUE	0	1	0	9	0	TRUE	ACH-000414
NCIH1944_LUNG	CLTC--RPS6KB1	2	0	CLTC	1316	chr17:57697534:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	NCIH1944_LUNG	1	1	0.0172	TRUE	0	1	0	5	0	TRUE	ACH-000414
NCIH1944_LUNG	POLE--PGAM5	2	0	POLE	1112	chr12:133263840:-	PGAM5	42986	chr12:133291444:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	LOCAL_INVERSION:-:+:[23454],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	NCIH1944_LUNG	1	1	0.0172	TRUE	0	0	0	2	0	TRUE	ACH-000414
NCIH1944_LUNG	RP11-114H21.2--CTB-1I21.1	1	4	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	NO	5	0	0.5	1	0.0086	0.0344	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	NCIH1944_LUNG	0.5	1	0.043	TRUE	0	2	0	12	2	TRUE	ACH-000414
NCIH1944_LUNG	RPS12--RNF149	2	0	RPS12	3385	chr6:133138200:+	RNF149	18657	chr2:101888206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	NCIH1944_LUNG	1	1	0.0172	TRUE	0	0	0	3	0	TRUE	ACH-000414
NCIH1944_LUNG	RBM47--APBB2	1	3	RBM47	2480	chr4:40631413:-	APBB2	37164	chr4:40947090:-	ONLY_REF_SPLICE	YES	35	5	0.1	0.44	0.0086	0.0258	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH1944_LUNG	0.1	0.44	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000414
KPL1_BREAST	BCAS4--BCAS3	2139	1312	BCAS4	1280	chr20:49411710:+	BCAS3	58366	chr17:59445688:+	ONLY_REF_SPLICE	YES	128	98	0.96	0.97	27.65	16.9597	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.96	0.97	44.6097	TRUE	0	1	1	3	0	TRUE	ACH-000028
KPL1_BREAST	ARFGEF2--SULF2	943	125	ARFGEF2	1121	chr20:47538547:+	SULF2	47936	chr20:46365686:-	ONLY_REF_SPLICE	YES	12	622	0.99	0.63	12.1898	1.6158	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KPL1_BREAST	0.63	0.99	13.8056	TRUE	0	0	1	2	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	493	210	RPS6KB1	7326	chr17:57992064:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	738	1293	0.49	0.35	6.3728	2.7146	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.35	0.49	9.0874	TRUE	0	4	1	7	3	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	95	1346	BCAS4	1280	chr20:49411710:+	BCAS3	54817	chr17:59430949:+	ONLY_REF_SPLICE	YES	128	63	0.92	0.96	1.228	17.3992	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.92	0.96	18.6272	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	9	1315	BCAS4	1280	chr20:49411710:+	BCAS3	55591	chr17:59431723:+	ONLY_REF_SPLICE	YES	128	97	0.91	0.93	0.1163	16.9985	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.91	0.93	17.1148	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	4	1314	BCAS4	1280	chr20:49411710:+	BCAS3	58346	chr17:59445668:+	INCL_NON_REF_SPLICE	YES	128	107	0.91	0.92	0.0517	16.9855	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.91	0.92	17.0372	TRUE	0	1	1	3	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	1	1314	BCAS4	1280	chr20:49411710:+	BCAS3	56732	chr17:59434210:+	ONLY_REF_SPLICE	YES	128	101	0.91	0.93	0.0129	16.9855	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.91	0.93	16.9984	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	1	1314	BCAS4	1280	chr20:49411710:+	BCAS3	57870	chr17:59445192:+	ONLY_REF_SPLICE	YES	128	103	0.91	0.93	0.0129	16.9855	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.91	0.93	16.9984	TRUE	0	1	1	3	0	TRUE	ACH-000028
KPL1_BREAST	ATP1A1--ZFP64	242	87	ATP1A1	16095	chr1:116939356:+	ZFP64	48550	chr20:50668671:-	ONLY_REF_SPLICE	YES	1024	0	0.24	1	3.1282	1.1246	ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+,ZFP64->Oncogene{Bushman},ZFP64_zinc_finger_protein,chr20:50668202-50820847:-	KPL1_BREAST	0.24	1	4.2528	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	CEP170B--INF2	170	6	CEP170B	1234	chr14:105331850:+	INF2	22637	chr14:105167694:+	ONLY_REF_SPLICE	YES	2	46	0.99	0.79	2.1975	0.0776	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,INF2->chr14:105155943-105185942:+,inverted_formin,_FH2_and_WH2_domain_containing	KPL1_BREAST	0.79	0.99	2.2751	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	PRG4--HMCN1	153	68	PRG4	1679	chr1:186266083:+	HMCN1	107004	chr1:186105800:+	ONLY_REF_SPLICE	YES	0	29	1	0.88	1.9778	0.879	PRG4->Oncogene{Bushman},chr1:186265405-186283694:+,proteoglycan_4,HMCN1->chr1:185703683-186160085:+,hemicentin_1	KPL1_BREAST	0.88	1	2.8568	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	113	100	RPS6KB1	4306	chr17:57987972:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	836	1193	0.2	0.15	1.4607	1.2927	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.15	0.2	2.7534	TRUE	0	2	1	6	1	TRUE	ACH-000028
KPL1_BREAST	TANC2--CA4	129	25	TANC2	2143	chr17:61151375:+	CA4	52881	chr17:58232675:+	ONLY_REF_SPLICE	YES	33	0	0.82	1	1.6675	0.3232	{Klijn_CCL:Breast=1},TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CA4->carbonic_anhydrase_4,chr17:58227297-58248260:+	KPL1_BREAST	0.82	1	1.9907	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	26	384	BCAS4	1280	chr20:49411710:+	BCAS3	66978	chr17:59469338:+	ONLY_REF_SPLICE	YES	128	825	0.76	0.33	0.3361	4.9638	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.33	0.76	5.2999	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	GCN1L1--MSI1	111	22	GCN1L1	2134	chr12:120628101:-	MSI1	58313	chr12:120785317:-	ONLY_REF_SPLICE	YES	95	7	0.58	0.95	1.4349	0.2844	{Klijn_CCL:Breast=1},GCN1L1->chr12:120565007-120632513:-,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	KPL1_BREAST	0.58	0.95	1.7193	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	SMARCA4--CARM1	105	34	SMARCA4	9164	chr19:11097269:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	117	56	0.54	0.71	1.3573	0.4395	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	KPL1_BREAST	0.54	0.71	1.7968	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	1	448	BCAS4	1280	chr20:49411710:+	BCAS3	62210	chr17:59457867:+	ONLY_REF_SPLICE	YES	128	884	0.78	0.34	0.0129	5.7911	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.34	0.78	5.804	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	AC099850.1--VMP1	100	39	AC099850.1	1994	chr17:57184952:+	VMP1	21543	chr17:57915656:+	ONLY_REF_SPLICE	YES	56	1193	0.71	0.1	1.2927	0.5041	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.1	0.71	1.7968	TRUE	0	1	1	2	1	TRUE	ACH-000028
KPL1_BREAST	PAPOLA--AK7	99	24	PAPOLA	2168	chr14:96968937:+	AK7	40553	chr14:96904172:+	ONLY_REF_SPLICE	YES	154	3	0.44	0.98	1.2797	0.3102	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	KPL1_BREAST	0.44	0.98	1.5899	TRUE	0	0	0	3	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	1	401	BCAS4	1280	chr20:49411710:+	BCAS3	63619	chr17:59465979:+	ONLY_REF_SPLICE	YES	128	884	0.76	0.31	0.0129	5.1836	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.31	0.76	5.1965	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	TXLNG--SYAP1	83	42	TXLNG	1163	chrX:16804712:+	SYAP1	18729	chrX:16753350:+	ONLY_REF_SPLICE	YES	13	224	0.91	0.36	1.0729	0.5429	LOCAL_REARRANGEMENT:+:[21091],TXLNG->chrX:16804550-16862642:+,taxilin_gamma,SYAP1->chrX:16737755-16783459:+,synapse_associated_protein_1	KPL1_BREAST	0.36	0.91	1.6158	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--DIAPH3	84	36	RPS6KB1	9551	chr17:58007535:+	DIAPH3	56314	chr13:60240980:-	ONLY_REF_SPLICE	YES	570	24	0.17	0.83	1.0858	0.4654	RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3	KPL1_BREAST	0.17	0.83	1.5512	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	PTPLB--MYLK	78	22	PTPLB	2902	chr3:123301059:-	MYLK	22687	chr3:123512691:-	ONLY_REF_SPLICE	YES	135	0	0.43	1	1.0083	0.2844	LOCAL_REARRANGEMENT:-:[24864],PTPLB->chr3:123209667-123304032:-,MYLK->chr3:123328896-123603178:-,myosin_light_chain_kinase	KPL1_BREAST	0.43	1	1.2927	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	14	253	RPS6KB1	9551	chr17:58007535:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	570	1193	0.32	0.18	0.181	3.2704	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.18	0.32	3.4514	TRUE	0	2	0	1	1	TRUE	ACH-000028
KPL1_BREAST	MYH9--EIF3D	66	29	MYH9	1212	chr22:36783852:-	EIF3D	47062	chr22:36922178:-	ONLY_REF_SPLICE	YES	274	39	0.26	0.71	0.8532	0.3749	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D	KPL1_BREAST	0.26	0.71	1.2281	TRUE	0	1	0	2	1	TRUE	ACH-000028
KPL1_BREAST	POP1--MATN2	70	1	POP1	1094	chr8:99129618:+	MATN2	42063	chr8:99042690:+	ONLY_REF_SPLICE	YES	0	26	1	0.73	0.9049	0.0129	LOCAL_REARRANGEMENT:+:[80581],POP1->POP1_homolog,_ribonuclease_P/MRP_subunit,chr8:99129525-99172062:+,MATN2->chr8:98881068-99048944:+,matrilin_2	KPL1_BREAST	0.73	1	0.9178	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	6	253	RPS6KB1	11099	chr17:58009083:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	639	1193	0.29	0.18	0.0776	3.2704	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.18	0.29	3.348	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	ATP1A1--ZFP64	44	87	ATP1A1	16095	chr1:116939356:+	ZFP64	48546	chr20:50668675:-	INCL_NON_REF_SPLICE	YES	1024	0	0.11	1	0.5688	1.1246	ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+,ZFP64->Oncogene{Bushman},ZFP64_zinc_finger_protein,chr20:50668202-50820847:-	KPL1_BREAST	0.11	1	1.6934	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	1	253	RPS6KB1	11099	chr17:58009083:+	VMP1	38445	chr17:57911373:+	ONLY_REF_SPLICE	YES	639	485	0.28	0.34	0.0129	3.2704	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.28	0.34	3.2833	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	1	246	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	NO	738	1193	0.25	0.17	0.0129	3.1799	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.17	0.25	3.1928	TRUE	0	8	0	9	5	TRUE	ACH-000028
KPL1_BREAST	MYO9B--FCHO1	52	36	MYO9B	2996	chr19:17213367:+	FCHO1	54568	chr19:17881234:+	ONLY_REF_SPLICE	YES	23	1	0.79	0.99	0.6722	0.4654	{Klijn_CCL:Breast=1},MYO9B->chr19:17186591-17325346:+,myosin_IXB,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	KPL1_BREAST	0.79	0.99	1.1376	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ATXN7L3--FAM171A2	57	10	ATXN7L3	3094	chr17:42275388:-	FAM171A2	15777	chr17:42433956:-	ONLY_REF_SPLICE	YES	20	18	0.77	0.79	0.7368	0.1293	ATXN7L3->ataxin_7_like_3,chr17:42269173-42277481:-,FAM171A2->chr17:42430583-42441243:-,family_with_sequence_similarity_171_member_A2	KPL1_BREAST	0.77	0.79	0.8661	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	MYO6--SENP6	51	25	MYO6	1232	chr6:76459140:+	SENP6	64441	chr6:76388299:+	ONLY_REF_SPLICE	YES	132	43	0.37	0.64	0.6593	0.3232	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[30912],MYO6->chr6:76458909-76629254:+,myosin_VI,SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+	KPL1_BREAST	0.37	0.64	0.9825	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	DEPDC1B--ELOVL7	48	28	DEPDC1B	9902	chr5:59934577:-	ELOVL7	32689	chr5:60053472:-	ONLY_REF_SPLICE	YES	32	11	0.7	0.87	0.6205	0.3619	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[51601],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	KPL1_BREAST	0.7	0.87	0.9824	TRUE	0	0	1	2	0	TRUE	ACH-000028
KPL1_BREAST	ARFGEF2--SULF2	20	125	ARFGEF2	1125	chr20:47538551:+	SULF2	47936	chr20:46365686:-	INCL_NON_REF_SPLICE	YES	18	622	0.89	0.19	0.2585	1.6158	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KPL1_BREAST	0.19	0.89	1.8743	TRUE	0	0	1	2	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	1	180	RPS6KB1	5427	chr17:57990165:+	VMP1	34053	chr17:57851115:+	ONLY_REF_SPLICE	NO	868	478	0.17	0.27	0.0129	2.3268	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.17	0.27	2.3397	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	1	177	RPS6KB1	5427	chr17:57990165:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	868	1193	0.17	0.13	0.0129	2.288	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.13	0.17	2.3009	TRUE	0	5	0	6	5	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	9	141	RPS6KB1	5427	chr17:57990165:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	868	1293	0.15	0.1	0.1163	1.8226	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.1	0.15	1.9389	TRUE	0	1	0	3	0	TRUE	ACH-000028
KPL1_BREAST	SMARCC1--EMCN	43	3	SMARCC1	5204	chr3:47779519:-	EMCN	43214	chr4:101491482:-	ONLY_REF_SPLICE	YES	42	0	0.52	1	0.5558	0.0388	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,EMCN->chr4:101316498-101801283:-,endomucin	KPL1_BREAST	0.52	1	0.5946	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ESR1--CCDC170	35	33	ESR1	3373	chr6:152023140:+	CCDC170	38747	chr6:151894309:+	ONLY_REF_SPLICE	YES	4	11	0.94	0.86	0.4524	0.4266	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	KPL1_BREAST	0.86	0.94	0.879	TRUE	0	1	0	3	1	TRUE	ACH-000028
KPL1_BREAST	RSBN1--AP4B1-AS1	32	20	RSBN1	1767	chr1:114354332:-	AP4B1-AS1	20221	chr1:114442494:+	ONLY_REF_SPLICE	YES	27	13	0.66	0.8	0.4137	0.2585	LOCAL_INVERSION:-:+:[44159],RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,AP4B1-AS1->AP4B1_antisense_RNA_1,chr1:114399257-114443859:+	KPL1_BREAST	0.66	0.8	0.6722	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	AHCYL1--RAD51C	32	12	AHCYL1	1487	chr1:110527794:+	RAD51C	32162	chr17:56811479:+	ONLY_REF_SPLICE	YES	131	139	0.25	0.24	0.4137	0.1551	{Klijn_CCL:Breast=1},AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+,RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+	KPL1_BREAST	0.24	0.25	0.5688	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	BCAS3--ATXN7	32	6	BCAS3	9960	chr17:58824640:+	ATXN7	75101	chr3:63981181:+	ONLY_REF_SPLICE	YES	23	53	0.62	0.42	0.4137	0.0776	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,ATXN7->ataxin_7,chr3:63850233-63989138:+	KPL1_BREAST	0.42	0.62	0.4913	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	AC099850.1--VMP1	21	40	AC099850.1	1994	chr17:57184952:+	VMP1	19837	chr17:57911373:+	ONLY_REF_SPLICE	YES	56	485	0.52	0.11	0.2715	0.5171	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.11	0.52	0.7886	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	TAF4--BRIP1	28	11	TAF4	2360	chr20:60639507:-	BRIP1	33209	chr17:59926617:-	ONLY_REF_SPLICE	YES	35	217	0.53	0.15	0.3619	0.1422	{Klijn_CCL:Breast=1},TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-	KPL1_BREAST	0.15	0.53	0.5041	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--ZMYND8	26	8	BCAS4	1280	chr20:49411710:+	ZMYND8	41369	chr20:45850125:-	ONLY_REF_SPLICE	YES	128	128	0.21	0.21	0.3361	0.1034	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	KPL1_BREAST	0.21	0.21	0.4395	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	SULF2--PRICKLE2	26	4	SULF2	2274	chr20:46414087:-	PRICKLE2	40949	chr3:64085601:-	ONLY_REF_SPLICE	YES	110	5	0.21	0.86	0.3361	0.0517	SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	KPL1_BREAST	0.21	0.86	0.3878	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ARFGEF2--SULF2	5	86	ARFGEF2	1111	chr20:47538537:+	SULF2	47936	chr20:46365686:-	INCL_NON_REF_SPLICE	YES	10	622	0.9	0.13	0.0646	1.1117	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KPL1_BREAST	0.13	0.9	1.1763	TRUE	0	0	1	2	0	TRUE	ACH-000028
KPL1_BREAST	PPFIA1--ANO1	23	5	PPFIA1	16154	chr11:70185412:+	ANO1	71375	chr11:70016993:+	ONLY_REF_SPLICE	YES	107	1	0.21	0.97	0.2973	0.0646	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	KPL1_BREAST	0.21	0.97	0.3619	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	GATAD2B--NUP210L	21	12	GATAD2B	1243	chr1:153895209:-	NUP210L	47435	chr1:154000073:-	ONLY_REF_SPLICE	YES	7	12	0.82	0.73	0.2715	0.1551	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	KPL1_BREAST	0.73	0.82	0.4266	TRUE	0	1	0	2	1	TRUE	ACH-000028
KPL1_BREAST	GCN1L1--MSI1	16	23	GCN1L1	2134	chr12:120628101:-	MSI1	57256	chr12:120789203:-	ONLY_REF_SPLICE	YES	95	6	0.29	0.87	0.2068	0.2973	{Klijn_CCL:Breast=1},GCN1L1->chr12:120565007-120632513:-,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	KPL1_BREAST	0.29	0.87	0.5041	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	TRIM37--DHX40P1	19	11	TRIM37	15041	chr17:57139928:-	DHX40P1	43517	chr17:58054131:-	ONLY_REF_SPLICE	YES	609	59	0.05	0.34	0.2456	0.1422	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,DHX40P1->DEAH-box_helicase_40_pseudogene_1,chr17:58053370-58079745:-	KPL1_BREAST	0.05	0.34	0.3878	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RP11-15E18.1--LPPR5	17	10	RP11-15E18.1	1209	chr17:58603862:+	LPPR5	8643	chr1:99470179:-	INCL_NON_REF_SPLICE	YES	10	0	0.73	1	0.2198	0.1293	RP11-15E18.1->chr17:58603654-58628159:+,LPPR5->chr1:99355806-99470588:-	KPL1_BREAST	0.73	1	0.3491	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ABCA5--PPP4R1L	15	11	ABCA5	7553	chr17:67309233:-	PPP4R1L	52141	chr20:56847931:-	ONLY_REF_SPLICE	YES	15	33	0.63	0.44	0.1939	0.1422	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene)	KPL1_BREAST	0.44	0.63	0.3361	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ADAMTS19--SLC27A6	16	6	ADAMTS19	1218	chr5:128796175:+	SLC27A6	44345	chr5:128364038:+	ONLY_REF_SPLICE	YES	3	0	0.88	1	0.2068	0.0776	ADAMTS19->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_19,chr5:128795958-129074376:+,SLC27A6->chr5:127873706-128369335:+,solute_carrier_family_27_member_6	KPL1_BREAST	0.88	1	0.2844	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ESR1--ULBP1	17	1	ESR1	3373	chr6:152023140:+	ULBP1	33955	chr6:150289743:+	ONLY_REF_SPLICE	YES	4	4	0.82	0.82	0.2198	0.0129	ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,ULBP1->UL16_binding_protein_1,chr6:150285143-150294846:+	KPL1_BREAST	0.82	0.82	0.2327	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	GATAD2B--NUP210L	14	13	GATAD2B	1243	chr1:153895209:-	NUP210L	46276	chr1:154002530:-	ONLY_REF_SPLICE	YES	7	0	0.79	1	0.181	0.168	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	KPL1_BREAST	0.79	1	0.349	TRUE	0	0	0	3	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	3	57	RPS6KB1	1240	chr17:57970686:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	769	482	0.07	0.11	0.0388	0.7368	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.07	0.11	0.7756	TRUE	0	2	0	6	2	TRUE	ACH-000028
KPL1_BREAST	ESR1--CCDC170	15	6	ESR1	3373	chr6:152023140:+	CCDC170	40065	chr6:151907024:+	ONLY_REF_SPLICE	YES	4	28	0.84	0.43	0.1939	0.0776	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	KPL1_BREAST	0.43	0.84	0.2715	TRUE	0	1	0	2	1	TRUE	ACH-000028
KPL1_BREAST	TAF4--BRIP1	15	4	TAF4	2360	chr20:60639507:-	BRIP1	34337	chr17:59924581:-	ONLY_REF_SPLICE	YES	35	174	0.35	0.1	0.1939	0.0517	{Klijn_CCL:Breast=1},TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-	KPL1_BREAST	0.1	0.35	0.2456	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	TTC6--RP11-356O9.1	15	3	TTC6	1162	chr14:38065213:+	RP11-356O9.1	55376	chr14:38033424:+	INCL_NON_REF_SPLICE	YES	9	2	0.67	0.9	0.1939	0.0388	LOCAL_REARRANGEMENT:+:[16722],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,RP11-356O9.1->chr14:38033252-38048330:+	KPL1_BREAST	0.67	0.9	0.2327	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	TAF4--LAMA5	13	9	TAF4	9117	chr20:60582603:-	LAMA5	41135	chr20:60910325:-	ONLY_REF_SPLICE	YES	52	123	0.3	0.15	0.168	0.1163	TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5	KPL1_BREAST	0.15	0.3	0.2843	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	LEMD3--RP1-74B13.2	14	3	LEMD3	5721	chr12:65612399:+	RP1-74B13.2	18520	chr12:111283403:+	ONLY_REF_SPLICE	YES	22	0	0.44	1	0.181	0.0388	LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+,RP1-74B13.2->chr12:111269583-111283767:+	KPL1_BREAST	0.44	1	0.2198	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ADAMTS19--SLC27A6	12	10	ADAMTS19	2493	chr5:128797450:+	SLC27A6	44345	chr5:128364038:+	ONLY_REF_SPLICE	YES	8	0	0.73	1	0.1551	0.1293	ADAMTS19->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_19,chr5:128795958-129074376:+,SLC27A6->chr5:127873706-128369335:+,solute_carrier_family_27_member_6	KPL1_BREAST	0.73	1	0.2844	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ARRB1--MAP6	13	5	ARRB1	19717	chr11:74979933:-	MAP6	29519	chr11:75319367:-	ONLY_REF_SPLICE	YES	38	0	0.32	1	0.168	0.0646	ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,MAP6->chr11:75297963-75380165:-,microtubule_associated_protein_6	KPL1_BREAST	0.32	1	0.2326	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	NAV1--GPR37L1	12	7	NAV1	8867	chr1:201709204:+	GPR37L1	49629	chr1:202096869:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1551	0.0905	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,GPR37L1->G_protein-coupled_receptor_37_like_1,chr1:202091986-202102720:+	KPL1_BREAST	1	1	0.2456	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	PNPLA7--DPH7	13	3	PNPLA7	11064	chr9:140409831:-	DPH7	42870	chr9:140450100:-	ONLY_REF_SPLICE	YES	0	93	1	0.15	0.168	0.0388	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[4370],PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7,DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7	KPL1_BREAST	0.15	1	0.2068	TRUE	0	4	1	2	4	TRUE	ACH-000028
KPL1_BREAST	RP11-15E18.1--LPPR5	12	2	RP11-15E18.1	1209	chr17:58603862:+	LPPR5	11249	chr1:99422297:-	ONLY_REF_SPLICE	YES	10	5	0.58	0.74	0.1551	0.0259	RP11-15E18.1->chr17:58603654-58628159:+,LPPR5->chr1:99355806-99470588:-	KPL1_BREAST	0.58	0.74	0.181	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ZBTB25--RP11-973N13.2	11	5	ZBTB25	9041	chr14:64952683:-	RP11-973N13.2	22770	chr14:65067081:-	INCL_NON_REF_SPLICE	YES	14	0	0.53	1	0.1422	0.0646	LOCAL_REARRANGEMENT:-:[95030],ZBTB25->chr14:64915824-64971931:-,zinc_finger_and_BTB_domain_containing_25,RP11-973N13.2->chr14:65066961-65068362:-	KPL1_BREAST	0.53	1	0.2068	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ANKS1A--UHRF1BP1	12	0	ANKS1A	1335	chr6:34857376:+	UHRF1BP1	33692	chr6:34801994:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1551	0	LOCAL_REARRANGEMENT:+:[6127],ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,UHRF1BP1->UHRF1_binding_protein_1,chr6:34759857-34850915:+	KPL1_BREAST	1	1	0.1551	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	TBL1XR1--RGS17	12	0	TBL1XR1	1353	chr3:176914909:-	RGS17	34360	chr6:153365178:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1551	0	chimerdb_pubmed{Breast carcinoma,breast cancer},TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RGS17->chr6:153325594-153452384:-,regulator_of_G-protein_signaling_17	KPL1_BREAST	1	1	0.1551	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	RSBN1--AP4B1-AS1	6	21	RSBN1	1767	chr1:114354332:-	AP4B1-AS1	19099	chr1:114440490:+	ONLY_REF_SPLICE	YES	27	0	0.5	1	0.0776	0.2715	LOCAL_INVERSION:-:+:[44159],RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,AP4B1-AS1->AP4B1_antisense_RNA_1,chr1:114399257-114443859:+	KPL1_BREAST	0.5	1	0.3491	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	PRMT2--DIP2A	10	3	PRMT2	2824	chr21:48056902:+	DIP2A	44795	chr21:47971547:+	ONLY_REF_SPLICE	YES	190	36	0.06	0.27	0.1293	0.0388	LOCAL_REARRANGEMENT:+:[65153],PRMT2->chr21:48055079-48085036:+,protein_arginine_methyltransferase_2,DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A	KPL1_BREAST	0.06	0.27	0.1681	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	FKBP1A--SIRPG	10	2	FKBP1A	4187	chr20:1356135:-	SIRPG	13743	chr20:1630054:-	ONLY_REF_SPLICE	YES	229	0	0.05	1	0.1293	0.0259	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,SIRPG->chr20:1609798-1638425:-,signal_regulatory_protein_gamma	KPL1_BREAST	0.05	1	0.1552	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	SULF2--PRICKLE2	9	4	SULF2	1569	chr20:46414792:-	PRICKLE2	40949	chr3:64085601:-	ONLY_REF_SPLICE	YES	106	5	0.11	0.72	0.1163	0.0517	SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	KPL1_BREAST	0.11	0.72	0.168	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ARRB1--KLHL35	9	3	ARRB1	1242	chr11:75062632:-	KLHL35	31211	chr11:75136626:-	ONLY_REF_SPLICE	YES	20	14	0.38	0.46	0.1163	0.0388	LOCAL_REARRANGEMENT:-:[70565],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,KLHL35->chr11:75133438-75141674:-,kelch_like_family_member_35	KPL1_BREAST	0.38	0.46	0.1551	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	PRG4--HMCN1	6	14	PRG4	1679	chr1:186266083:+	HMCN1	107834	chr1:186106630:+	ONLY_REF_SPLICE	YES	0	66	1	0.23	0.0776	0.181	PRG4->Oncogene{Bushman},chr1:186265405-186283694:+,proteoglycan_4,HMCN1->chr1:185703683-186160085:+,hemicentin_1	KPL1_BREAST	0.23	1	0.2586	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	TNS3--PLCB1	9	2	TNS3	34251	chr7:47341784:-	PLCB1	51280	chr20:8352029:+	ONLY_REF_SPLICE	YES	11	6	0.5	0.65	0.1163	0.0259	TNS3->chr7:47314752-47622156:-,tensin_3,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	KPL1_BREAST	0.5	0.65	0.1422	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	PLCG1--TOP1	9	0	PLCG1	1899	chr20:39766498:+	TOP1	35225	chr20:39729878:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1163	0	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	KPL1_BREAST	1	1	0.1163	TRUE	0	0	0	3	0	TRUE	ACH-000028
KPL1_BREAST	RNF41--APOF	9	0	RNF41	1174	chr12:56615544:-	APOF	14818	chr12:56755973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1163	0	RNF41->chr12:56598285-56615717:-,ring_finger_protein_41,APOF->apolipoprotein_F,chr12:56754353-56756607:-	KPL1_BREAST	1	1	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RSBN1--DCLRE1B	8	4	RSBN1	1767	chr1:114354332:-	DCLRE1B	17045	chr1:114448091:+	INCL_NON_REF_SPLICE	YES	27	45	0.31	0.21	0.1034	0.0517	LOCAL_INVERSION:-:+:[92665],RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,DCLRE1B->DNA_cross-link_repair_1B,chr1:114447763-114456708:+	KPL1_BREAST	0.21	0.31	0.1551	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	MYO9B--FCHO1	2	26	MYO9B	2996	chr19:17213367:+	FCHO1	54607	chr19:17881273:+	ONLY_REF_SPLICE	YES	23	0	0.55	1	0.0259	0.3361	{Klijn_CCL:Breast=1},MYO9B->chr19:17186591-17325346:+,myosin_IXB,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	KPL1_BREAST	0.55	1	0.362	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	OTUD5--GRIPAP1	8	2	OTUD5	6227	chrX:48791737:-	GRIPAP1	14534	chrX:48855916:-	ONLY_REF_SPLICE	YES	85	1	0.11	0.91	0.1034	0.0259	LOCAL_REARRANGEMENT:-:[14486],OTUD5->OTU_deubiquitinase_5,chrX:48779305-48815648:-,GRIPAP1->GRIP1_associated_protein_1,chrX:48830134-48858675:-	KPL1_BREAST	0.11	0.91	0.1293	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	PDE8A--SCAND2P	8	1	PDE8A	2621	chr15:85525579:+	SCAND2P	36611	chr15:85180578:+	ONLY_REF_SPLICE	YES	12	4	0.43	0.69	0.1034	0.0129	PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SCAND2P->SCAN_domain_containing_2_pseudogene,chr15:85174682-85185695:+	KPL1_BREAST	0.43	0.69	0.1163	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	PLCG1--TOP1	8	0	PLCG1	1076	chr20:39765675:+	TOP1	35196	chr20:39729849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1034	0	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	KPL1_BREAST	1	1	0.1034	TRUE	0	0	0	3	0	TRUE	ACH-000028
KPL1_BREAST	RP11-977B10.2--SLC16A7	7	4	RP11-977B10.2	1104	chr12:49658436:-	SLC16A7	12410	chr12:60098553:+	ONLY_REF_SPLICE	YES	1	15	0.92	0.42	0.0905	0.0517	RP11-977B10.2->chr12:49627352-49658539:-,SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7	KPL1_BREAST	0.42	0.92	0.1422	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ABCA5--ITGB4	7	3	ABCA5	2312	chr17:67321840:-	ITGB4	64445	chr17:73738422:+	ONLY_REF_SPLICE	YES	1	149	0.91	0.06	0.0905	0.0388	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	KPL1_BREAST	0.06	0.91	0.1293	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	B3GNTL1--SLC9A8	7	3	B3GNTL1	14863	chr17:80914571:-	SLC9A8	37320	chr20:48494518:+	ONLY_REF_SPLICE	YES	3	26	0.77	0.28	0.0905	0.0388	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,SLC9A8->chr20:48429250-48508779:+,solute_carrier_family_9_member_A8	KPL1_BREAST	0.28	0.77	0.1293	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	PAPOLA--AK7	4	15	PAPOLA	2168	chr14:96968937:+	AK7	41634	chr14:96909067:+	ONLY_REF_SPLICE	NO	154	3	0.11	0.86	0.0517	0.1939	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	KPL1_BREAST	0.11	0.86	0.2456	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	RNF126--PRSS57	7	1	RNF126	1231	chr19:663047:-	PRSS57	12463	chr19:694970:-	ONLY_REF_SPLICE	YES	19	0	0.3	1	0.0905	0.0129	LOCAL_REARRANGEMENT:-:[22244],RNF126->chr19:647526-663277:-,ring_finger_protein_126,PRSS57->chr19:685521-695460:-,protease,_serine_57	KPL1_BREAST	0.3	1	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RAD51C--ATXN7	6	4	RAD51C	11155	chr17:56801461:+	ATXN7	25577	chr3:63965591:+	ONLY_REF_SPLICE	YES	183	37	0.05	0.21	0.0776	0.0517	RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+,ATXN7->ataxin_7,chr3:63850233-63989138:+	KPL1_BREAST	0.05	0.21	0.1293	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	KIF1C--ENO3	6	2	KIF1C	9681	chr17:4910837:+	ENO3	29308	chr17:4855123:+	ONLY_REF_SPLICE	YES	184	11	0.04	0.42	0.0776	0.0259	LOCAL_REARRANGEMENT:+:[40817],KIF1C->chr17:4901243-4931696:+,kinesin_family_member_1C,ENO3->chr17:4851387-4860426:+,enolase_3	KPL1_BREAST	0.04	0.42	0.1035	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	ARHGAP10--EDNRA	6	1	ARHGAP10	26218	chr4:148944564:+	EDNRA	37025	chr4:148406764:+	ONLY_REF_SPLICE	YES	22	0	0.24	1	0.0776	0.0129	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	KPL1_BREAST	0.24	1	0.0905	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	PLCG1--TOP1	6	0	PLCG1	1899	chr20:39766498:+	TOP1	35196	chr20:39729849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0776	0	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	KPL1_BREAST	1	1	0.0776	TRUE	0	0	0	3	0	TRUE	ACH-000028
KPL1_BREAST	SMARCC1--EMCN	5	4	SMARCC1	5204	chr3:47779519:-	EMCN	42115	chr4:101505123:-	ONLY_REF_SPLICE	YES	42	0	0.18	1	0.0646	0.0517	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,EMCN->chr4:101316498-101801283:-,endomucin	KPL1_BREAST	0.18	1	0.1163	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	AC005037.3--NIF3L1	5	3	AC005037.3	1368	chr2:201828353:+	NIF3L1	10743	chr2:201757969:+	ONLY_REF_SPLICE	YES	0	92	1	0.08	0.0646	0.0388	LOCAL_REARRANGEMENT:+:[59331],AC005037.3->chr2:201827986-201873825:+,NIF3L1->NGG1_interacting_factor_3_like_1,chr2:201754050-201768655:+	KPL1_BREAST	0.08	1	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	MYO9B--FCHO1	4	7	MYO9B	2996	chr19:17213367:+	FCHO1	54935	chr19:17881601:+	ONLY_REF_SPLICE	YES	23	7	0.32	0.61	0.0517	0.0905	{Klijn_CCL:Breast=1},MYO9B->chr19:17186591-17325346:+,myosin_IXB,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	KPL1_BREAST	0.32	0.61	0.1422	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ZNF584--AC010642.1	5	3	ZNF584	1159	chr19:58913029:+	AC010642.1	18177	chr19:58823532:+	ONLY_REF_SPLICE	YES	2	68	0.8	0.11	0.0646	0.0388	LOCAL_REARRANGEMENT:+:[86308],ZNF584->chr19:58912871-58929694:+,zinc_finger_protein_584,AC010642.1->chr19:58790332-58826563:+	KPL1_BREAST	0.11	0.8	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	C11orf49--ATG13	5	1	C11orf49	1163	chr11:46958402:+	ATG13	44947	chr11:46686933:+	ONLY_REF_SPLICE	YES	15	77	0.29	0.07	0.0646	0.0129	C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49,ATG13->autophagy_related_13,chr11:46638826-46696368:+	KPL1_BREAST	0.07	0.29	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RNF126--PRSS57	5	1	RNF126	1231	chr19:663047:-	PRSS57	12466	chr19:694967:-	INCL_NON_REF_SPLICE	YES	19	0	0.24	1	0.0646	0.0129	LOCAL_REARRANGEMENT:-:[22244],RNF126->chr19:647526-663277:-,ring_finger_protein_126,PRSS57->chr19:685521-695460:-,protease,_serine_57	KPL1_BREAST	0.24	1	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	TANC2--CA4	1	17	TANC2	2143	chr17:61151375:+	CA4	53935	chr17:58233921:+	ONLY_REF_SPLICE	NO	33	4	0.35	0.82	0.0129	0.2198	{Klijn_CCL:Breast=1},TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CA4->carbonic_anhydrase_4,chr17:58227297-58248260:+	KPL1_BREAST	0.35	0.82	0.2327	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	SMARCA4--CARM1	5	0	SMARCA4	1253	chr19:11071850:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	KPL1_BREAST	1	1	0.0646	TRUE	0	2	0	2	1	TRUE	ACH-000028
KPL1_BREAST	CTC-228N24.3--FBN2	4	2	CTC-228N24.3	5579	chr5:127396836:-	FBN2	34082	chr5:127782299:-	ONLY_REF_SPLICE	YES	67	0	0.08	1	0.0517	0.0259	CTC-228N24.3->chr5:127276118-127418864:-,FBN2->chr5:127593601-127994878:-,fibrillin_2	KPL1_BREAST	0.08	1	0.0776	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	TTLL1--TTLL12	4	2	TTLL1	8830	chr22:43455390:-	TTLL12	16713	chr22:43579155:-	ONLY_REF_SPLICE	YES	19	23	0.24	0.21	0.0517	0.0259	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[77194],TTLL1->chr22:43435522-43485434:-,tubulin_tyrosine_ligase_like_1,TTLL12->chr22:43562628-43583139:-,tubulin_tyrosine_ligase_like_12	KPL1_BREAST	0.21	0.24	0.0776	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	KCND3--PPM1E	3	5	KCND3	3586	chr1:112524243:-	PPM1E	20698	chr17:57043055:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0388	0.0646	KCND3->chr1:112313284-112531777:-,potassium_voltage-gated_channel_subfamily_D_member_3,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	KPL1_BREAST	0.8	1	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	ANKRD11--FANCA	4	0	ANKRD11	4629	chr16:89484692:-	FANCA	58016	chr16:89839792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-	KPL1_BREAST	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	FAM222B--PHF12	4	0	FAM222B	8446	chr17:27093604:-	PHF12	22781	chr17:27254081:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	KPL1_BREAST	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	NCOA3--AC005808.3	4	0	NCOA3	14149	chr20:46266527:+	AC005808.3	30690	chr20:52234376:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,AC005808.3->chr20:52224893-52251129:+	KPL1_BREAST	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	PARD6B--BCAS3	4	0	PARD6B	1309	chr20:49348389:+	BCAS3	57781	chr17:59445688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	PARD6B->chr20:49348081-49373332:+,par-6_family_cell_polarity_regulator_beta,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	VAV3--AP4B1-AS1	4	0	VAV3	37724	chr1:108138834:-	AP4B1-AS1	49352	chr1:114442494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	VAV3->Oncogene{Bushman},chr1:108113782-108507766:-,vav_guanine_nucleotide_exchange_factor_3,AP4B1-AS1->AP4B1_antisense_RNA_1,chr1:114399257-114443859:+	KPL1_BREAST	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	BRWD1--LCA5L	3	3	BRWD1	3513	chr21:40684767:-	LCA5L	64134	chr21:40801137:-	ONLY_REF_SPLICE	YES	37	13	0.14	0.32	0.0388	0.0388	LOCAL_REARRANGEMENT:-:[84285],BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,LCA5L->Leber_congenital_amaurosis_5-like,chr21:40777770-40817731:-	KPL1_BREAST	0.14	0.32	0.0776	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	ESR1--CCDC170	2	7	ESR1	2242	chr6:152011799:+	CCDC170	38747	chr6:151894309:+	ONLY_REF_SPLICE	YES	4	11	0.69	0.45	0.0259	0.0905	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	KPL1_BREAST	0.45	0.69	0.1164	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ESR1--CCDC170	3	2	ESR1	3373	chr6:152023140:+	CCDC170	41345	chr6:151914242:+	ONLY_REF_SPLICE	YES	4	8	0.56	0.38	0.0388	0.0259	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	KPL1_BREAST	0.38	0.56	0.0647	TRUE	0	1	0	1	1	TRUE	ACH-000028
KPL1_BREAST	ARHGAP10--EDNRA	3	0	ARHGAP10	26218	chr4:148944564:+	EDNRA	44527	chr4:148463630:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	FAF1--CALR4P	3	0	FAF1	9453	chr1:51121114:-	CALR4P	31244	chr1:52039727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,CALR4P->calreticulin_4,_pseudogene,chr1:52027538-52060569:-	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	PTPLB--MYLK	1	8	PTPLB	2902	chr3:123301059:-	MYLK	23855	chr3:123471385:-	ONLY_REF_SPLICE	NO	135	19	0.06	0.32	0.0129	0.1034	LOCAL_REARRANGEMENT:-:[24864],PTPLB->chr3:123209667-123304032:-,MYLK->chr3:123328896-123603178:-,myosin_light_chain_kinase	KPL1_BREAST	0.06	0.32	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RNF41--APOF	3	0	RNF41	1031	chr12:56615687:-	APOF	14818	chr12:56755973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	RNF41->chr12:56598285-56615717:-,ring_finger_protein_41,APOF->apolipoprotein_F,chr12:56754353-56756607:-	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	STXBP6--OGFOD3	3	0	STXBP6	6848	chr14:25443871:-	OGFOD3	24747	chr17:80369406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	STXBP6->chr14:25278862-25519503:-,syntaxin_binding_protein_6,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	AUTS2--C12orf49	2	3	AUTS2	7553	chr7:69599557:+	C12orf49	39054	chr12:117161028:-	ONLY_REF_SPLICE	YES	6	17	0.45	0.23	0.0259	0.0388	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,C12orf49->chr12:117153593-117175875:-,chromosome_12_open_reading_frame_49	KPL1_BREAST	0.23	0.45	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	ATXN7--BCAS1	2	2	ATXN7	5937	chr3:63898901:+	BCAS1	31989	chr20:52612589:-	ONLY_REF_SPLICE	YES	13	41	0.24	0.09	0.0259	0.0259	ATXN7->ataxin_7,chr3:63850233-63989138:+,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	KPL1_BREAST	0.09	0.24	0.0518	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	BRWD1--LCA5L	2	2	BRWD1	3513	chr21:40684767:-	LCA5L	66587	chr21:40795416:-	ONLY_REF_SPLICE	YES	37	18	0.1	0.18	0.0259	0.0259	LOCAL_REARRANGEMENT:-:[84285],BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,LCA5L->Leber_congenital_amaurosis_5-like,chr21:40777770-40817731:-	KPL1_BREAST	0.1	0.18	0.0518	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	GTF3C2--FNDC4	2	2	GTF3C2	1263	chr2:27579606:-	FNDC4	19361	chr2:27717570:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0259	0.0259	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,FNDC4->chr2:27714750-27718112:-,fibronectin_type_III_domain_containing_4	KPL1_BREAST	0.19	1	0.0518	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	ARHGAP10--EDNRA	2	1	ARHGAP10	26218	chr4:148944564:+	EDNRA	38515	chr4:148441003:+	ONLY_REF_SPLICE	YES	22	0	0.12	1	0.0259	0.0129	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	KPL1_BREAST	0.12	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	DEPDC1B--ELOVL7	2	1	DEPDC1B	4088	chr5:59982789:-	ELOVL7	32689	chr5:60053472:-	ONLY_REF_SPLICE	YES	72	11	0.04	0.21	0.0259	0.0129	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[51601],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	KPL1_BREAST	0.04	0.21	0.0388	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	KCNV1--C8orf47	2	1	KCNV1	4450	chr8:110984487:-	C8orf47	14823	chr8:99101304:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0.0129	KCNV1->chr8:110975874-110988076:-,potassium_voltage-gated_channel_modifier_subfamily_V_member_1,C8orf47->chr8:99076539-99105838:+	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	NAV1--GPR37L1	2	1	NAV1	7107	chr1:201687883:+	GPR37L1	49629	chr1:202096869:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0.0129	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,GPR37L1->G_protein-coupled_receptor_37_like_1,chr1:202091986-202102720:+	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	UBE2E2--RP11-20B7.1	2	1	UBE2E2	3680	chr3:23258803:+	RP11-20B7.1	15371	chr3:73918927:+	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0259	0.0129	UBE2E2->chr3:23244511-23633284:+,ubiquitin_conjugating_enzyme_E2_E2,RP11-20B7.1->chr3:73857752-73952017:+	KPL1_BREAST	0.14	1	0.0388	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ARRB1--KLHL35	2	0	ARRB1	1242	chr11:75062632:-	KLHL35	32400	chr11:75134924:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	LOCAL_REARRANGEMENT:-:[70565],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,KLHL35->chr11:75133438-75141674:-,kelch_like_family_member_35	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	BRWD1--LCA5L	2	0	BRWD1	3513	chr21:40684767:-	LCA5L	70372	chr21:40783728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	LOCAL_REARRANGEMENT:-:[84285],BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,LCA5L->Leber_congenital_amaurosis_5-like,chr21:40777770-40817731:-	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	BRWD1--LCA5L	1	4	BRWD1	3513	chr21:40684767:-	LCA5L	58370	chr21:40816127:-	ONLY_REF_SPLICE	YES	37	1	0.12	0.83	0.0129	0.0517	LOCAL_REARRANGEMENT:-:[84285],BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,LCA5L->Leber_congenital_amaurosis_5-like,chr21:40777770-40817731:-	KPL1_BREAST	0.12	0.83	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	DDX46--SEC24A	2	0	DDX46	30966	chr5:134169313:+	SEC24A	49620	chr5:134032816:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[30956],DDX46->DEAD-box_helicase_46,chr5:134094469-134190823:+,SEC24A->SEC24_homolog_A,_COPII_coat_complex_component,chr5:133984479-134063513:+	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	11	0	TRUE	ACH-000028
KPL1_BREAST	PLCG1--TOP1	2	0	PLCG1	1899	chr20:39766498:+	TOP1	36341	chr20:39741422:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RELA--CFL1	2	0	RELA	1269	chr11:65430297:-	CFL1	17092	chr11:65623713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	RELA->Oncogene{Bushman},RELA_proto-oncogene,_NF-kB_subunit,chr11:65421067-65430565:-,CFL1->chr11:65590493-65629497:-,cofilin_1	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	SULF2--PRICKLE2	1	4	SULF2	1782	chr20:46414579:-	PRICKLE2	40949	chr3:64085601:-	ONLY_REF_SPLICE	YES	104	5	0.05	0.5	0.0129	0.0517	SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	KPL1_BREAST	0.05	0.5	0.0646	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	TTC6--RP11-356O9.1	2	0	TTC6	1162	chr14:38065213:+	RP11-356O9.1	56520	chr14:38047909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	LOCAL_REARRANGEMENT:+:[16722],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,RP11-356O9.1->chr14:38033252-38048330:+	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	UNK--ABCA5	1	4	UNK	15037	chr17:73816189:+	ABCA5	24679	chr17:67313964:-	ONLY_REF_SPLICE	NO	41	1	0.11	0.83	0.0129	0.0517	UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-	KPL1_BREAST	0.11	0.83	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	ARRB1--MAP6	1	3	ARRB1	16506	chr11:74983939:-	MAP6	29519	chr11:75319367:-	ONLY_REF_SPLICE	YES	47	0	0.08	1	0.0129	0.0388	ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,MAP6->chr11:75297963-75380165:-,microtubule_associated_protein_6	KPL1_BREAST	0.08	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	BRWD1--LCA5L	1	3	BRWD1	3513	chr21:40684767:-	LCA5L	62828	chr21:40807468:-	ONLY_REF_SPLICE	NO	37	7	0.1	0.36	0.0129	0.0388	LOCAL_REARRANGEMENT:-:[84285],BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,LCA5L->Leber_congenital_amaurosis_5-like,chr21:40777770-40817731:-	KPL1_BREAST	0.1	0.36	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	KCND3--PPM1E	1	3	KCND3	3586	chr1:112524243:-	PPM1E	21898	chr17:57046900:+	ONLY_REF_SPLICE	NO	2	2	0.67	0.67	0.0129	0.0388	KCND3->chr1:112313284-112531777:-,potassium_voltage-gated_channel_subfamily_D_member_3,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	KPL1_BREAST	0.67	0.67	0.0517	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	NAV1--GPR37L1	1	2	NAV1	8635	chr1:201708972:+	GPR37L1	49629	chr1:202096869:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0.0259	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,GPR37L1->G_protein-coupled_receptor_37_like_1,chr1:202091986-202102720:+	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	2	0	TRUE	ACH-000028
MDAMB436_BREAST	PDAP1--PTCD1	252	133	PDAP1	5873	chr7:98995485:-	PTCD1	23274	chr7:99021580:-	ONLY_REF_SPLICE	YES	640	24	0.38	0.94	3.3898	1.7891	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[7910],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,PTCD1->chr7:99014362-99063787:-,pentatricopeptide_repeat_domain_1	MDAMB436_BREAST	0.38	0.94	5.1789	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PRDX3--PTEN	272	0	PRDX3	1079	chr10:120938267:-	PTEN	17754	chr10:89685270:+	ONLY_REF_SPLICE	YES	0	0	1	1	3.6588	0	PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	MDAMB436_BREAST	1	1	3.6588	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	STXBP4--TOM1L1	205	0	STXBP4	1089	chr17:53046176:+	TOM1L1	49954	chr17:53037927:+	ONLY_REF_SPLICE	YES	0	0	1	1	2.7576	0	LOCAL_REARRANGEMENT:+:[6778],STXBP4->chr17:53046088-53241646:+,syntaxin_binding_protein_4,TOM1L1->chr17:52976748-53039310:+,target_of_myb1_like_1_membrane_trafficking_protein	MDAMB436_BREAST	1	1	2.7576	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CELF1--C1QTNF4	189	1	CELF1	3345	chr11:47574544:-	C1QTNF4	31973	chr11:47615883:-	INCL_NON_REF_SPLICE	YES	90	0	0.68	1	2.5423	0.0135	LOCAL_REARRANGEMENT:-:[24095],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C1QTNF4->C1q_and_tumor_necrosis_factor_related_protein_4,chr11:47611216-47616211:-	MDAMB436_BREAST	0.68	1	2.5558	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	TYRO3--RTF1	171	65	TYRO3	5299	chr15:41854916:+	RTF1	30784	chr15:41762455:+	ONLY_REF_SPLICE	YES	35	88	0.87	0.73	2.3002	0.8743	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[74112],TYRO3->Oncogene{Bushman},TYRO3_protein_tyrosine_kinase,chr15:41849873-41871536:+,RTF1->RTF1_homolog,_Paf1/RNA_polymerase_II_complex_component,chr15:41700606-41775761:+	MDAMB436_BREAST	0.73	0.87	3.1745	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CELF1--C1QTNF4	150	79	CELF1	3345	chr11:47574544:-	C1QTNF4	31749	chr11:47616107:-	INCL_NON_REF_SPLICE	YES	90	1	0.72	1	2.0177	1.0627	LOCAL_REARRANGEMENT:-:[24095],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C1QTNF4->C1q_and_tumor_necrosis_factor_related_protein_4,chr11:47611216-47616211:-	MDAMB436_BREAST	0.72	1	3.0804	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	MFSD1--RSRC1	139	97	MFSD1	5342	chr3:158520104:+	RSRC1	39568	chr3:158178724:+	ONLY_REF_SPLICE	YES	90	45	0.72	0.84	1.8698	1.3048	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},MFSD1->chr3:158449987-158547508:+,major_facilitator_superfamily_domain_containing_1,RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+	MDAMB436_BREAST	0.72	0.84	3.1746	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TIAL1--MCMBP	141	47	TIAL1	5189	chr10:121347664:-	MCMBP	21488	chr10:121619396:-	ONLY_REF_SPLICE	YES	74	11	0.72	0.94	1.8967	0.6322	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-,MCMBP->chr10:121588972-121652068:-,minichromosome_maintenance_complex_binding_protein	MDAMB436_BREAST	0.72	0.94	2.5289	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PDAP1--PTCD1	101	145	PDAP1	7238	chr7:98993999:-	PTCD1	23274	chr7:99021580:-	INCL_NON_REF_SPLICE	YES	52	24	0.83	0.91	1.3586	1.9505	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[7910],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,PTCD1->chr7:99014362-99063787:-,pentatricopeptide_repeat_domain_1	MDAMB436_BREAST	0.83	0.91	3.3091	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PKN3--SET	96	61	PKN3	4465	chr9:131469629:+	SET	24812	chr9:131457961:+	INCL_NON_REF_SPLICE	YES	88	189	0.64	0.45	1.2913	0.8205	LOCAL_REARRANGEMENT:+:[6123],PKN3->chr9:131464802-131483197:+,protein_kinase_N3,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAMB436_BREAST	0.45	0.64	2.1118	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	EXOSC10--MTOR	94	34	EXOSC10	2298	chr1:11158077:-	MTOR	76385	chr1:11169786:-	ONLY_REF_SPLICE	YES	69	56	0.65	0.7	1.2644	0.4574	LOCAL_REARRANGEMENT:-:[6654],EXOSC10->chr1:11126675-11159938:-,exosome_component_10,MTOR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:11166592-11322564:-,mechanistic_target_of_rapamycin	MDAMB436_BREAST	0.65	0.7	1.7218	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CTD-2547E10.2--CTB-31N19.2	92	28	CTD-2547E10.2	9565	chr16:21487920:-	CTB-31N19.2	36456	chr16:21544409:-	ONLY_REF_SPLICE	YES	50	0	0.71	1	1.2375	0.3766	LOCAL_REARRANGEMENT:-:[12501],CTD-2547E10.2->chr16:21458004-21531765:-,CTB-31N19.2->chr16:21544266-21561694:-	MDAMB436_BREAST	0.71	1	1.6141	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	RIMS2--ATP6V1C1	90	17	RIMS2	1315	chr8:104513290:+	ATP6V1C1	58458	chr8:104075183:+	ONLY_REF_SPLICE	YES	2	97	0.98	0.52	1.2106	0.2287	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Breast=1},RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+	MDAMB436_BREAST	0.52	0.98	1.4393	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SLC22A23--PHACTR2	85	19	SLC22A23	8751	chr6:3410422:-	PHACTR2	45326	chr6:144128194:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	1.1434	0.2556	SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23,PHACTR2->chr6:143857982-144152322:+,phosphatase_and_actin_regulator_2	MDAMB436_BREAST	0.99	1	1.399	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	C12orf49--ATP10A	86	7	C12orf49	1281	chr12:117175595:-	ATP10A	29019	chr15:25940293:-	ONLY_REF_SPLICE	YES	11	0	0.89	1	1.1568	0.0942	{Klijn_CCL:Breast=1},C12orf49->chr12:117153593-117175875:-,chromosome_12_open_reading_frame_49,ATP10A->ATPase_phospholipid_transporting_10A_(putative),chr15:25922420-26110317:-	MDAMB436_BREAST	0.89	1	1.251	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SPTAN1--GLE1	67	25	SPTAN1	2990	chr9:131329256:+	GLE1	57746	chr9:131296040:+	ONLY_REF_SPLICE	YES	92	89	0.5	0.51	0.9013	0.3363	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[10299],SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	MDAMB436_BREAST	0.5	0.51	1.2376	TRUE	0	0	0	2	0	TRUE	ACH-000573
MDAMB436_BREAST	SNRPD3--UPB1	52	38	SNRPD3	2713	chr22:24953768:+	UPB1	27915	chr22:24919587:+	ONLY_REF_SPLICE	YES	427	5	0.17	0.95	0.6995	0.5112	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[27113],SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,UPB1->chr22:24863206-24924358:+,ureidopropionase,_beta	MDAMB436_BREAST	0.17	0.95	1.2107	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	UVRAG--MOGAT2	49	28	UVRAG	15547	chr11:75694557:+	MOGAT2	33153	chr11:75431037:+	ONLY_REF_SPLICE	YES	21	0	0.79	1	0.6591	0.3766	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[82209],UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,MOGAT2->chr11:75428864-75444003:+,monoacylglycerol_O-acyltransferase_2	MDAMB436_BREAST	0.79	1	1.0357	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	RBPMS2--LINC00686	50	5	RBPMS2	4559	chr15:65042542:-	LINC00686	12927	chr20:61326615:-	ONLY_REF_SPLICE	YES	17	0	0.76	1	0.6726	0.0673	RBPMS2->RNA_binding_protein_with_multiple_splicing_2,chr15:65032091-65067786:-,LINC00686->chr20:61326376-61331832:-,long_intergenic_non-protein_coding_RNA_686	MDAMB436_BREAST	0.76	1	0.7399	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	USP3--NTSR1	43	17	USP3	9169	chr15:63829355:+	NTSR1	33034	chr20:61386037:+	ONLY_REF_SPLICE	YES	31	3	0.66	0.95	0.5784	0.2287	USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3,NTSR1->chr20:61340189-61394123:+,neurotensin_receptor_1_(high_affinity)	MDAMB436_BREAST	0.66	0.95	0.8071	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	KIRREL--P2RX1	45	8	KIRREL	1456	chr1:157963518:+	P2RX1	25436	chr17:3806637:-	ONLY_REF_SPLICE	YES	31	0	0.63	1	0.6053	0.1076	KIRREL->chr1:157963063-158070052:+,kin_of_IRRE_like_(Drosophila),P2RX1->chr17:3799886-3819794:-,purinergic_receptor_P2X_1	MDAMB436_BREAST	0.63	1	0.7129	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ZNF609--RBPMS2	46	1	ZNF609	7090	chr15:64915251:+	RBPMS2	27589	chr15:65043837:-	ONLY_REF_SPLICE	YES	36	14	0.57	0.77	0.6188	0.0135	LOCAL_INVERSION:+:-:[53827],ZNF609->chr15:64752941-64978264:+,zinc_finger_protein_609,RBPMS2->RNA_binding_protein_with_multiple_splicing_2,chr15:65032091-65067786:-	MDAMB436_BREAST	0.57	0.77	0.6323	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PDAP1--PTCD1	3	134	PDAP1	7238	chr7:98993999:-	PTCD1	23277	chr7:99021577:-	INCL_NON_REF_SPLICE	YES	52	23	0.72	0.86	0.0404	1.8025	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[7910],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,PTCD1->chr7:99014362-99063787:-,pentatricopeptide_repeat_domain_1	MDAMB436_BREAST	0.72	0.86	1.8429	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ANKRD13A--TCHP	34	6	ANKRD13A	1599	chr12:110437589:+	TCHP	46249	chr12:110418710:+	ONLY_REF_SPLICE	YES	16	3	0.71	0.93	0.4574	0.0807	LOCAL_REARRANGEMENT:+:[15345],ANKRD13A->ankyrin_repeat_domain_13A,chr12:110436991-110477568:+,TCHP->chr12:110338069-110421646:+,trichoplein_keratin_filament_binding	MDAMB436_BREAST	0.71	0.93	0.5381	TRUE	0	2	0	1	2	TRUE	ACH-000573
MDAMB436_BREAST	PDAP1--PTCD1	4	122	PDAP1	5873	chr7:98995485:-	PTCD1	23277	chr7:99021577:-	INCL_NON_REF_SPLICE	YES	640	23	0.16	0.85	0.0538	1.6411	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[7910],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,PTCD1->chr7:99014362-99063787:-,pentatricopeptide_repeat_domain_1	MDAMB436_BREAST	0.16	0.85	1.6949	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TNFAIP8--DMXL1	30	15	TNFAIP8	1216	chr5:118604602:+	DMXL1	70520	chr5:118576114:+	ONLY_REF_SPLICE	YES	23	10	0.66	0.82	0.4035	0.2018	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:+:[19554],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,DMXL1->Dmx_like_1,chr5:118373467-118584833:+	MDAMB436_BREAST	0.66	0.82	0.6053	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	USP34--XPO1	29	13	USP34	19239	chr2:61558411:-	XPO1	85339	chr2:61729445:-	ONLY_REF_SPLICE	YES	21	175	0.67	0.19	0.3901	0.1749	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	MDAMB436_BREAST	0.19	0.67	0.565	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TAF1C--KCNG4	29	5	TAF1C	1163	chr16:84220507:-	KCNG4	17023	chr16:84256626:-	ONLY_REF_SPLICE	YES	55	0	0.38	1	0.3901	0.0673	LOCAL_REARRANGEMENT:-:[35154],TAF1C->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_C,chr16:84211458-84220669:-,KCNG4->chr16:84255823-84273356:-,potassium_voltage-gated_channel_modifier_subfamily_G_member_4	MDAMB436_BREAST	0.38	1	0.4574	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CELF1--C1QTNF4	10	80	CELF1	3345	chr11:47574544:-	C1QTNF4	31647	chr11:47616209:-	INCL_NON_REF_SPLICE	YES	90	0	0.5	1	0.1345	1.0761	LOCAL_REARRANGEMENT:-:[24095],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C1QTNF4->C1q_and_tumor_necrosis_factor_related_protein_4,chr11:47611216-47616211:-	MDAMB436_BREAST	0.5	1	1.2106	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	SPTAN1--GLE1	18	32	SPTAN1	2990	chr9:131329256:+	GLE1	57498	chr9:131295792:+	ONLY_REF_SPLICE	YES	92	73	0.35	0.41	0.2421	0.4304	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[10299],SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	MDAMB436_BREAST	0.35	0.41	0.6725	TRUE	0	0	0	2	0	TRUE	ACH-000573
MDAMB436_BREAST	MFSD1--RSRC1	1	98	MFSD1	5642	chr3:158520404:+	RSRC1	39568	chr3:158178724:+	ONLY_REF_SPLICE	YES	106	45	0.48	0.69	0.0135	1.3183	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},MFSD1->chr3:158449987-158547508:+,major_facilitator_superfamily_domain_containing_1,RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+	MDAMB436_BREAST	0.48	0.69	1.3318	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CHD2--NUP85	23	8	CHD2	9554	chr15:93448238:+	NUP85	69059	chr17:73221793:+	ONLY_REF_SPLICE	YES	31	71	0.5	0.3	0.3094	0.1076	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,NUP85->chr17:73201754-73231853:+,nucleoporin_85	MDAMB436_BREAST	0.3	0.5	0.417	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SNRPD3--UPB1	13	43	SNRPD3	2713	chr22:24953768:+	UPB1	26872	chr22:24917954:+	ONLY_REF_SPLICE	YES	427	0	0.12	1	0.1749	0.5784	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[27113],SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,UPB1->chr22:24863206-24924358:+,ureidopropionase,_beta	MDAMB436_BREAST	0.12	1	0.7533	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PDAP1--PTCD1	3	76	PDAP1	5873	chr7:98995485:-	PTCD1	23309	chr7:99021545:-	INCL_NON_REF_SPLICE	YES	640	18	0.11	0.81	0.0404	1.0223	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[7910],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,PTCD1->chr7:99014362-99063787:-,pentatricopeptide_repeat_domain_1	MDAMB436_BREAST	0.11	0.81	1.0627	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	IARS--NOL8	19	0	IARS	1146	chr9:95055893:-	NOL8	56863	chr9:95061236:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2556	0	LOCAL_REARRANGEMENT:-:[3602],IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,NOL8->chr9:95059640-95087918:-,nucleolar_protein_8	MDAMB436_BREAST	1	1	0.2556	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TNFAIP8--DMXL1	12	25	TNFAIP8	2334	chr5:118651997:+	DMXL1	68335	chr5:118573017:+	ONLY_REF_SPLICE	YES	26	5	0.59	0.88	0.1614	0.3363	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:+:[19554],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,DMXL1->Dmx_like_1,chr5:118373467-118584833:+	MDAMB436_BREAST	0.59	0.88	0.4977	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SMG1P1--CA5A	18	0	SMG1P1	8133	chr16:22473655:+	CA5A	38327	chr16:87921878:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2421	0	SMG1P1->SMG1_pseudogene_1,chr16:22448329-22503541:+,CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-	MDAMB436_BREAST	1	1	0.2421	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	LYST--TMLHE	14	5	LYST	59768	chr1:235872391:-	TMLHE	76532	chrX:154774938:-	ONLY_REF_SPLICE	YES	11	28	0.63	0.4	0.1883	0.0673	LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator,TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon	MDAMB436_BREAST	0.4	0.63	0.2556	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TMEM182--IL18R1	13	7	TMEM182	5940	chr2:103380886:+	IL18R1	19533	chr2:102979093:+	ONLY_REF_SPLICE	YES	21	5	0.49	0.8	0.1749	0.0942	TMEM182->chr2:103353367-103460352:+,transmembrane_protein_182,IL18R1->chr2:102927989-103015218:+,interleukin_18_receptor_1	MDAMB436_BREAST	0.49	0.8	0.2691	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	RP11-31F15.1--WNT2B	14	2	RP11-31F15.1	3407	chr1:113503197:+	WNT2B	13080	chr1:113033633:+	ONLY_REF_SPLICE	YES	5	0	0.76	1	0.1883	0.0269	RP11-31F15.1->chr1:113499037-113542118:+,WNT2B->Wnt_family_member_2B,chr1:113009163-113072787:+	MDAMB436_BREAST	0.76	1	0.2152	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	HERC1--RBPMS2	12	4	HERC1	1121	chr15:64126021:-	RBPMS2	89930	chr15:65043837:-	ONLY_REF_SPLICE	YES	10	14	0.62	0.53	0.1614	0.0538	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,RBPMS2->RNA_binding_protein_with_multiple_splicing_2,chr15:65032091-65067786:-	MDAMB436_BREAST	0.53	0.62	0.2152	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SNRPD3--UPB1	10	11	SNRPD3	2713	chr22:24953768:+	UPB1	29070	chr22:24921679:+	ONLY_REF_SPLICE	YES	427	30	0.05	0.41	0.1345	0.148	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[27113],SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,UPB1->chr22:24863206-24924358:+,ureidopropionase,_beta	MDAMB436_BREAST	0.05	0.41	0.2825	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	STRN--SULT1C2	12	3	STRN	1243	chr2:37193373:-	SULT1C2	37581	chr2:108921030:+	ONLY_REF_SPLICE	YES	3	30	0.83	0.33	0.1614	0.0404	STRN->Oncogene{Bushman},chr2:37070783-37193615:-,striatin,SULT1C2->chr2:108905095-108926371:+,sulfotransferase_family_1C_member_2	MDAMB436_BREAST	0.33	0.83	0.2018	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ANKHD1--B4GALT4-AS1	12	2	ANKHD1	23891	chr5:139887583:+	B4GALT4-AS1	47717	chr3:119009488:+	ONLY_REF_SPLICE	YES	14	0	0.5	1	0.1614	0.0269	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,B4GALT4-AS1->B4GALT4_antisense_RNA_1,chr3:118945333-119009513:+	MDAMB436_BREAST	0.5	1	0.1883	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	HERC1--RBPMS2	11	4	HERC1	1116	chr15:64126026:-	RBPMS2	89930	chr15:65043837:-	ONLY_REF_SPLICE	YES	9	14	0.62	0.52	0.148	0.0538	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,RBPMS2->RNA_binding_protein_with_multiple_splicing_2,chr15:65032091-65067786:-	MDAMB436_BREAST	0.52	0.62	0.2018	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PHACTR2--SLC22A23	11	4	PHACTR2	17181	chr6:144110047:+	SLC22A23	40320	chr6:3324236:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.148	0.0538	PHACTR2->chr6:143857982-144152322:+,phosphatase_and_actin_regulator_2,SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23	MDAMB436_BREAST	0.94	1	0.2018	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MAMDC4--C9orf172	11	1	MAMDC4	1148	chr9:139745542:+	C9orf172	15488	chr9:139740499:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.148	0.0135	LOCAL_REARRANGEMENT:+:[3598],MAMDC4->MAM_domain_containing_4,Oncogene{Bushman},chr9:139745395-139755249:+,C9orf172->chr9:139738867-139741797:+,chromosome_9_open_reading_frame_172	MDAMB436_BREAST	0.92	1	0.1615	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TRIM44--PDHX	10	4	TRIM44	1976	chr11:35685328:+	PDHX	27072	chr11:35041755:+	ONLY_REF_SPLICE	YES	138	5	0.09	0.74	0.1345	0.0538	TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	MDAMB436_BREAST	0.09	0.74	0.1883	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TNFAIP8--DMXL1	6	19	TNFAIP8	1216	chr5:118604602:+	DMXL1	68335	chr5:118573017:+	ONLY_REF_SPLICE	YES	23	5	0.52	0.83	0.0807	0.2556	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:+:[19554],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,DMXL1->Dmx_like_1,chr5:118373467-118584833:+	MDAMB436_BREAST	0.52	0.83	0.3363	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	NIPBL--RP11-159F24.6	8	10	NIPBL	9318	chr5:36972143:+	RP11-159F24.6	56730	chr5:43521660:+	ONLY_REF_SPLICE	YES	27	0	0.4	1	0.1076	0.1345	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,RP11-159F24.6->chr5:43511160-43521913:+	MDAMB436_BREAST	0.4	1	0.2421	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SLC7A5--CA5A	10	2	SLC7A5	3780	chr16:87885330:-	CA5A	24129	chr16:87925560:-	ONLY_REF_SPLICE	YES	225	0	0.05	1	0.1345	0.0269	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[18531],SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-	MDAMB436_BREAST	0.05	1	0.1614	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ZUFSP--RP11-257K9.8	10	1	ZUFSP	11026	chr6:116966877:-	RP11-257K9.8	22032	chr6:73919803:-	ONLY_REF_SPLICE	YES	7	0	0.61	1	0.1345	0.0135	ZUFSP->chr6:116956781-116989957:-,zinc_finger_with_UFM1_specific_peptidase_domain,RP11-257K9.8->chr6:73919469-73972919:-	MDAMB436_BREAST	0.61	1	0.148	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PTEN--PRDX3	9	4	PTEN	4898	chr10:89653866:+	PRDX3	26161	chr10:120933384:-	ONLY_REF_SPLICE	YES	1	304	0.93	0.04	0.1211	0.0538	{Klijn_CCL:Breast=1},PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog,PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3	MDAMB436_BREAST	0.04	0.93	0.1749	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PHACTR4--ACTA2	8	6	PHACTR4	2277	chr1:28733974:+	ACTA2	29331	chr10:90708710:-	ONLY_REF_SPLICE	YES	23	6	0.38	0.7	0.1076	0.0807	PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,ACTA2->actin,_alpha_2,_smooth_muscle,_aorta,chr10:90694831-90751147:-	MDAMB436_BREAST	0.38	0.7	0.1883	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ANKRD13A--TCHP	9	1	ANKRD13A	1134	chr12:110437124:+	TCHP	46249	chr12:110418710:+	ONLY_REF_SPLICE	YES	1	3	0.91	0.77	0.1211	0.0135	LOCAL_REARRANGEMENT:+:[15345],ANKRD13A->ankyrin_repeat_domain_13A,chr12:110436991-110477568:+,TCHP->chr12:110338069-110421646:+,trichoplein_keratin_filament_binding	MDAMB436_BREAST	0.77	0.91	0.1346	TRUE	0	2	0	1	2	TRUE	ACH-000573
MDAMB436_BREAST	RABGEF1--WBSCR17	9	0	RABGEF1	1095	chr7:66147245:+	WBSCR17	35856	chr7:71130396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1211	0	RABGEF1->RAB_guanine_nucleotide_exchange_factor_1,chr7:66147151-66276451:+,WBSCR17->Williams-Beuren_syndrome_chromosome_region_17,chr7:70597155-71178585:+	MDAMB436_BREAST	1	1	0.1211	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TNFAIP8--DMXL1	5	15	TNFAIP8	1216	chr5:118604602:+	DMXL1	69428	chr5:118574684:+	ONLY_REF_SPLICE	YES	23	6	0.47	0.77	0.0673	0.2018	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:+:[19554],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,DMXL1->Dmx_like_1,chr5:118373467-118584833:+	MDAMB436_BREAST	0.47	0.77	0.2691	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	USP3--NTSR1	7	6	USP3	1237	chr15:63797029:+	NTSR1	33034	chr20:61386037:+	ONLY_REF_SPLICE	YES	61	3	0.18	0.81	0.0942	0.0807	USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3,NTSR1->chr20:61340189-61394123:+,neurotensin_receptor_1_(high_affinity)	MDAMB436_BREAST	0.18	0.81	0.1749	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	C12orf49--ATP10A	8	0	C12orf49	1281	chr12:117175595:-	ATP10A	30347	chr15:25936938:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1076	0	{Klijn_CCL:Breast=1},C12orf49->chr12:117153593-117175875:-,chromosome_12_open_reading_frame_49,ATP10A->ATPase_phospholipid_transporting_10A_(putative),chr15:25922420-26110317:-	MDAMB436_BREAST	1	1	0.1076	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	HIBADH--JAZF1	7	1	HIBADH	6024	chr7:27668990:-	JAZF1	21404	chr7:27935035:-	ONLY_REF_SPLICE	YES	94	9	0.08	0.47	0.0942	0.0135	HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,JAZF1->JAZF_zinc_finger_1,Oncogene{Bushman},chr7:27870192-28220362:-	MDAMB436_BREAST	0.08	0.47	0.1077	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	THRAP3--ICA1	7	0	THRAP3	1090	chr1:36690106:+	ICA1	30811	chr7:8198282:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0942	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,ICA1->chr7:8152814-8302317:-,islet_cell_autoantigen_1	MDAMB436_BREAST	1	1	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SPTAN1--GLE1	5	7	SPTAN1	2990	chr9:131329256:+	GLE1	57908	chr9:131296202:+	INCL_NON_REF_SPLICE	YES	92	101	0.12	0.11	0.0673	0.0942	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[10299],SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	MDAMB436_BREAST	0.11	0.12	0.1615	TRUE	0	0	0	2	0	TRUE	ACH-000573
MDAMB436_BREAST	HERC1--ZNF609	6	2	HERC1	28423	chr15:63998979:-	ZNF609	96955	chr15:64962545:+	ONLY_REF_SPLICE	YES	8	34	0.5	0.19	0.0807	0.0269	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,ZNF609->chr15:64752941-64978264:+,zinc_finger_protein_609	MDAMB436_BREAST	0.19	0.5	0.1076	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CELF1--C1QTNF4	5	5	CELF1	3345	chr11:47574544:-	C1QTNF4	31923	chr11:47615933:-	INCL_NON_REF_SPLICE	YES	90	5	0.1	0.67	0.0673	0.0673	LOCAL_REARRANGEMENT:-:[24095],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C1QTNF4->C1q_and_tumor_necrosis_factor_related_protein_4,chr11:47611216-47616211:-	MDAMB436_BREAST	0.1	0.67	0.1346	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	RABGEF1--WBSCR17	6	1	RABGEF1	2153	chr7:66177211:+	WBSCR17	35856	chr7:71130396:+	ONLY_REF_SPLICE	YES	1	10	0.88	0.41	0.0807	0.0135	RABGEF1->RAB_guanine_nucleotide_exchange_factor_1,chr7:66147151-66276451:+,WBSCR17->Williams-Beuren_syndrome_chromosome_region_17,chr7:70597155-71178585:+	MDAMB436_BREAST	0.41	0.88	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CELF1--C1QTNF4	6	0	CELF1	3345	chr11:47574544:-	C1QTNF4	31996	chr11:47615860:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0807	0	LOCAL_REARRANGEMENT:-:[24095],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C1QTNF4->C1q_and_tumor_necrosis_factor_related_protein_4,chr11:47611216-47616211:-	MDAMB436_BREAST	1	1	0.0807	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	RBMS3--CX3CR1	6	0	RBMS3	5193	chr3:29628696:+	CX3CR1	35135	chr3:39308009:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0807	0	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,CX3CR1->C-X3-C_motif_chemokine_receptor_1,chr3:39304985-39323226:-	MDAMB436_BREAST	1	1	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SLC22A23--PHACTR2	5	3	SLC22A23	2117	chr6:3456140:-	PHACTR2	45326	chr6:144128194:+	ONLY_REF_SPLICE	YES	12	1	0.4	0.89	0.0673	0.0404	SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23,PHACTR2->chr6:143857982-144152322:+,phosphatase_and_actin_regulator_2	MDAMB436_BREAST	0.4	0.89	0.1077	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	STRN--SULT1C2	5	3	STRN	1243	chr2:37193373:-	SULT1C2	33907	chr2:108917356:+	ONLY_REF_SPLICE	YES	3	39	0.73	0.17	0.0673	0.0404	STRN->Oncogene{Bushman},chr2:37070783-37193615:-,striatin,SULT1C2->chr2:108905095-108926371:+,sulfotransferase_family_1C_member_2	MDAMB436_BREAST	0.17	0.73	0.1077	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	RRP8--GMDS	5	2	RRP8	1217	chr11:6624634:-	GMDS	30094	chr6:1624775:-	ONLY_REF_SPLICE	YES	45	0	0.13	1	0.0673	0.0269	RRP8->chr11:6616305-6624850:-,ribosomal_RNA_processing_8,_methyltransferase,_homolog_(yeast),GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	MDAMB436_BREAST	0.13	1	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SLIT2--RP11-608O21.1	5	2	SLIT2	6032	chr4:20270504:+	RP11-608O21.1	51030	chr4:19535171:+	ONLY_REF_SPLICE	YES	33	1	0.17	0.88	0.0673	0.0269	SLIT2->ArcherDX_panel,FoundationOne_panel,chr4:20254883-20622184:+,slit_guidance_ligand_2,RP11-608O21.1->chr4:19457059-19911315:+	MDAMB436_BREAST	0.17	0.88	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ZNF787--ZSCAN5A	5	1	ZNF787	1109	chr19:56632541:-	ZSCAN5A	12014	chr19:56827637:-	ONLY_REF_SPLICE	YES	34	0	0.15	1	0.0673	0.0135	HGNC_GENEFAM,PROTCLUST,ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787,ZSCAN5A->chr19:56732681-56879752:-,zinc_finger_and_SCAN_domain_containing_5A	MDAMB436_BREAST	0.15	1	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CELF1--C1QTNF4	5	0	CELF1	3345	chr11:47574544:-	C1QTNF4	33157	chr11:47612367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0673	0	LOCAL_REARRANGEMENT:-:[24095],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C1QTNF4->C1q_and_tumor_necrosis_factor_related_protein_4,chr11:47611216-47616211:-	MDAMB436_BREAST	1	1	0.0673	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	CTD-2547E10.2--CTB-31N19.2	3	6	CTD-2547E10.2	8351	chr16:21489412:-	CTB-31N19.2	36456	chr16:21544409:-	ONLY_REF_SPLICE	YES	60	0	0.13	1	0.0404	0.0807	LOCAL_REARRANGEMENT:-:[12501],CTD-2547E10.2->chr16:21458004-21531765:-,CTB-31N19.2->chr16:21544266-21561694:-	MDAMB436_BREAST	0.13	1	0.1211	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PTEN--PRDX3	2	10	PTEN	4898	chr10:89653866:+	PRDX3	24128	chr10:120936665:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0269	0.1345	{Klijn_CCL:Breast=1},PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog,PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3	MDAMB436_BREAST	0.92	1	0.1614	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ZUFSP--RP11-257K9.8	4	2	ZUFSP	11026	chr6:116966877:-	RP11-257K9.8	20911	chr6:73926362:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0538	0.0269	ZUFSP->chr6:116956781-116989957:-,zinc_finger_with_UFM1_specific_peptidase_domain,RP11-257K9.8->chr6:73919469-73972919:-	MDAMB436_BREAST	0.46	1	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PRKACB--HMGN5	4	1	PRKACB	1310	chr1:84544054:+	HMGN5	30102	chrX:80377171:-	ONLY_REF_SPLICE	YES	54	10	0.08	0.33	0.0538	0.0135	PRKACB->chr1:84543745-84704181:+,protein_kinase_cAMP-activated_catalytic_subunit_beta,HMGN5->chrX:80369200-80457441:-,high_mobility_group_nucleosome_binding_domain_5	MDAMB436_BREAST	0.08	0.33	0.0673	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	USP3-AS1--FAM96A	4	1	USP3-AS1	4499	chr15:63886894:-	FAM96A	16610	chr15:64386070:-	INCL_NON_REF_SPLICE	YES	3	1	0.62	0.83	0.0538	0.0135	USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-,FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A	MDAMB436_BREAST	0.62	0.83	0.0673	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CARNS1--ADRBK1	4	0	CARNS1	5594	chr11:67187032:+	ADRBK1	22426	chr11:67051325:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+,ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+	MDAMB436_BREAST	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	COMMD9--EFHC2	4	0	COMMD9	7116	chr11:36295824:-	EFHC2	27586	chrX:44008142:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	COMMD9->COMM_domain_containing_9,chr11:36295051-36310999:-,EFHC2->EF-hand_domain_containing_2,chrX:44007128-44202918:-	MDAMB436_BREAST	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	NRP2--BTNL8	3	4	NRP2	7803	chr2:206581098:+	BTNL8	38276	chr5:180335586:+	ONLY_REF_SPLICE	YES	13	0	0.35	1	0.0404	0.0538	NRP2->chr2:206546714-206662857:+,neuropilin_2,BTNL8->butyrophilin_like_8,chr5:180326077-180377906:+	MDAMB436_BREAST	0.35	1	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SWT1--PKP1	4	0	SWT1	11477	chr1:185159774:+	PKP1	27073	chr1:201263070:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	SWT1->SWT1,_RNA_endoribonuclease_homolog,chr1:185126212-185260897:+,PKP1->chr1:201252580-201302121:+,plakophilin_1	MDAMB436_BREAST	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ZNF787--ZSCAN5A	4	0	ZNF787	1109	chr19:56632541:-	ZSCAN5A	25700	chr19:56736542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	HGNC_GENEFAM,PROTCLUST,ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787,ZSCAN5A->chr19:56732681-56879752:-,zinc_finger_and_SCAN_domain_containing_5A	MDAMB436_BREAST	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SLC22A23--PHACTR2	2	7	SLC22A23	7596	chr6:3415986:-	PHACTR2	45326	chr6:144128194:+	ONLY_REF_SPLICE	YES	6	1	0.6	0.9	0.0269	0.0942	SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23,PHACTR2->chr6:143857982-144152322:+,phosphatase_and_actin_regulator_2	MDAMB436_BREAST	0.6	0.9	0.1211	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	STRN--SULT1C2	3	3	STRN	1243	chr2:37193373:-	SULT1C2	33845	chr2:108917294:+	ONLY_REF_SPLICE	YES	3	30	0.67	0.17	0.0404	0.0404	STRN->Oncogene{Bushman},chr2:37070783-37193615:-,striatin,SULT1C2->chr2:108905095-108926371:+,sulfotransferase_family_1C_member_2	MDAMB436_BREAST	0.17	0.67	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	USP3-AS1--FAM96A	3	2	USP3-AS1	7939	chr15:63881028:-	FAM96A	16610	chr15:64386070:-	INCL_NON_REF_SPLICE	YES	6	1	0.45	0.83	0.0404	0.0269	USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-,FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A	MDAMB436_BREAST	0.45	0.83	0.0673	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	AC084125.4--ADCK5	3	0	AC084125.4	1222	chr8:145660823:+	ADCK5	12676	chr8:145603076:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[42145],AC084125.4->chr8:145660602-145665354:+,ADCK5->aarF_domain_containing_kinase_5,chr8:145596790-145618457:+	MDAMB436_BREAST	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	NRP2--BTNL8	2	1	NRP2	7803	chr2:206581098:+	BTNL8	40388	chr5:180338339:+	ONLY_REF_SPLICE	YES	13	1	0.19	0.75	0.0269	0.0135	NRP2->chr2:206546714-206662857:+,neuropilin_2,BTNL8->butyrophilin_like_8,chr5:180326077-180377906:+	MDAMB436_BREAST	0.19	0.75	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	RP11-31F15.1--WNT2B	2	1	RP11-31F15.1	3407	chr1:113503197:+	WNT2B	15940	chr1:113057496:+	ONLY_REF_SPLICE	YES	5	0	0.38	1	0.0269	0.0135	RP11-31F15.1->chr1:113499037-113542118:+,WNT2B->Wnt_family_member_2B,chr1:113009163-113072787:+	MDAMB436_BREAST	0.38	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	WWOX--VAT1L	2	1	WWOX	10605	chr16:78198186:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0269	0.0135	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	MDAMB436_BREAST	0.27	1	0.0404	TRUE	0	0	0	6	0	TRUE	ACH-000573
MDAMB436_BREAST	EDF1--TPRN	2	0	EDF1	2690	chr9:139757740:-	TPRN	13208	chr9:140087143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	{Klijn_CCL:Colo-Rectal=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,TPRN->chr9:140086069-140098645:-,taperin	MDAMB436_BREAST	1	1	0.0269	TRUE	0	4	0	4	0	TRUE	ACH-000573
MDAMB436_BREAST	FOXK1--RADIL	2	0	FOXK1	6548	chr7:4780654:+	RADIL	41924	chr7:4843385:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_INVERSION:+:-:[25612],FOXK1->chr7:4683388-4811074:+,forkhead_box_K1,RADIL->Rap_associating_with_DIL_domain,chr7:4836686-4923350:-	MDAMB436_BREAST	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	HIBADH--JAZF1	2	0	HIBADH	4902	chr7:27671955:-	JAZF1	21404	chr7:27935035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,JAZF1->JAZF_zinc_finger_1,Oncogene{Bushman},chr7:27870192-28220362:-	MDAMB436_BREAST	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	STXBP4--TOM1L1	2	0	STXBP4	1089	chr17:53046176:+	TOM1L1	48739	chr17:53036641:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:+:[6778],STXBP4->chr17:53046088-53241646:+,syntaxin_binding_protein_4,TOM1L1->chr17:52976748-53039310:+,target_of_myb1_like_1_membrane_trafficking_protein	MDAMB436_BREAST	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TIAL1--MCMBP	2	0	TIAL1	1596	chr10:121355946:-	MCMBP	26180	chr10:121609088:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-,MCMBP->chr10:121588972-121652068:-,minichromosome_maintenance_complex_binding_protein	MDAMB436_BREAST	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ZC3HAV1--CD44	2	0	ZC3HAV1	5859	chr7:138764216:-	CD44	31310	chr11:35219668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	ZC3HAV1->chr7:138728266-138794465:-,zinc_finger_CCCH-type_containing,_antiviral_1,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	MDAMB436_BREAST	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ZNF788--PGLYRP2	2	0	ZNF788	1208	chr19:12203285:+	PGLYRP2	19261	chr19:15590246:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	ZNF788->chr19:12203078-12225491:+,chr19:12203078-12248050:+,zinc_finger_family_member_788,PGLYRP2->chr19:15579456-15609767:-,peptidoglycan_recognition_protein_2	MDAMB436_BREAST	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TNFAIP8--DMXL1	1	2	TNFAIP8	1216	chr5:118604602:+	DMXL1	72791	chr5:118582690:+	ONLY_REF_SPLICE	YES	23	25	0.12	0.11	0.0135	0.0269	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:+:[19554],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,DMXL1->Dmx_like_1,chr5:118373467-118584833:+	MDAMB436_BREAST	0.11	0.12	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	FBXW7--MCU	1	1	FBXW7	2161	chr4:153456093:-	MCU	35541	chr10:74594117:+	ONLY_REF_SPLICE	NO	4	13	0.33	0.13	0.0135	0.0135	FBXW7->ArcherDX_panel,F-box_and_WD_repeat_domain_containing_7,FoundationOne_panel,Oncogene{Bushman},chr4:153242410-153457253:-,MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter	MDAMB436_BREAST	0.13	0.33	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	LINC00610--EFHC2	1	1	LINC00610	1194	chr11:36294716:-	EFHC2	24435	chrX:44008142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0135	0.0135	LINC00610->chr11:36290834-36294909:-,long_intergenic_non-protein_coding_RNA_610,EFHC2->EF-hand_domain_containing_2,chrX:44007128-44202918:-	MDAMB436_BREAST	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000573
HGC27_STOMACH	ZHX1--TAF2	234	207	ZHX1	3911	chr8:124279513:-	TAF2	18914	chr8:120818641:-	ONLY_REF_SPLICE	YES	1459	673	0.23	0.4	2.4765	2.1908	ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-	HGC27_STOMACH	0.23	0.4	4.6673	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	CSMD3--RP11-89M16.1	144	117	CSMD3	12944	chr8:114110985:-	RP11-89M16.1	98638	chr8:129440630:-	ONLY_REF_SPLICE	YES	38	0	0.87	1	1.524	1.2383	CSMD3->CUB_and_Sushi_multiple_domains_3,Oncogene{Bushman},chr8:113235157-114449328:-,RP11-89M16.1->chr8:129417515-129576925:-	HGC27_STOMACH	0.87	1	2.7623	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	EIF3H--RP11-785H20.1	78	76	EIF3H	7051	chr8:117738255:-	RP11-785H20.1	23614	chr8:122901064:+	ONLY_REF_SPLICE	YES	1380	0	0.1	1	0.8255	0.8043	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RP11-785H20.1->chr8:122896963-122916512:+	HGC27_STOMACH	0.1	1	1.6298	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	TATDN1--MTSS1	81	0	TATDN1	1434	chr8:125551266:-	MTSS1	28842	chr8:125597402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8573	0	{Klijn_CCL:Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[11332],TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	HGC27_STOMACH	1	1	0.8573	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	PSMA3--ACTR10	55	48	PSMA3	2731	chr14:58714550:+	ACTR10	16805	chr14:58669573:+	ONLY_REF_SPLICE	YES	1605	328	0.06	0.24	0.5821	0.508	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[9799],PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,ACTR10->actin-related_protein_10_homolog,chr14:58666798-58701750:+	HGC27_STOMACH	0.06	0.24	1.0901	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	PSMA3--RP11-349A22.3	56	30	PSMA3	2731	chr14:58714550:+	RP11-349A22.3	16339	chr14:58652043:+	INCL_NON_REF_SPLICE	YES	1605	0	0.05	1	0.5927	0.3175	LOCAL_REARRANGEMENT:+:[59324],PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,RP11-349A22.3->chr14:58651294-58652225:+	HGC27_STOMACH	0.05	1	0.9102	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	PSMA3--ACTR10	53	9	PSMA3	1111	chr14:58711659:+	ACTR10	16805	chr14:58669573:+	ONLY_REF_SPLICE	YES	96	328	0.39	0.16	0.5609	0.0953	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[9799],PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,ACTR10->actin-related_protein_10_homolog,chr14:58666798-58701750:+	HGC27_STOMACH	0.16	0.39	0.6562	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	ZHX1--TAF2	1	208	ZHX1	3911	chr8:124279513:-	TAF2	17753	chr8:120831746:-	ONLY_REF_SPLICE	YES	1459	800	0.13	0.21	0.0106	2.2013	ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-	HGC27_STOMACH	0.13	0.21	2.2119	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	ZHX1--TAF2	5	189	ZHX1	3907	chr8:124279517:-	TAF2	18914	chr8:120818641:-	INCL_NON_REF_SPLICE	YES	1411	673	0.12	0.22	0.0529	2.0003	ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-	HGC27_STOMACH	0.12	0.22	2.0532	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	BLVRA--COA1	37	35	BLVRA	7986	chr7:43832411:+	COA1	29676	chr7:43680248:-	ONLY_REF_SPLICE	YES	436	611	0.14	0.11	0.3916	0.3704	LOCAL_INVERSION:+:-:[28963],BLVRA->biliverdin_reductase_A,chr7:43798279-43846939:+,COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog	HGC27_STOMACH	0.11	0.14	0.762	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RQCD1--RUFY4	41	15	RQCD1	1399	chr2:219433701:+	RUFY4	27661	chr2:218947833:+	ONLY_REF_SPLICE	YES	235	0	0.19	1	0.4339	0.1588	RQCD1->chr2:219433303-219461803:+,RUFY4->RUN_and_FYVE_domain_containing_4,chr2:218899683-218955304:+	HGC27_STOMACH	0.19	1	0.5927	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	EIF3H--RP11-785H20.1	33	46	EIF3H	3765	chr8:117767905:-	RP11-785H20.1	23614	chr8:122901064:+	ONLY_REF_SPLICE	YES	1310	0	0.06	1	0.3493	0.4868	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RP11-785H20.1->chr8:122896963-122916512:+	HGC27_STOMACH	0.06	1	0.8361	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	HSD17B4--TNFAIP8	26	25	HSD17B4	24393	chr5:118862914:+	TNFAIP8	44947	chr5:118728511:+	ONLY_REF_SPLICE	YES	405	209	0.11	0.2	0.2752	0.2646	LOCAL_REARRANGEMENT:+:[52755],HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	HGC27_STOMACH	0.11	0.2	0.5398	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	ZHX1--TAF2	5	106	ZHX1	3911	chr8:124279513:-	TAF2	20033	chr8:120816259:-	ONLY_REF_SPLICE	YES	1459	646	0.07	0.15	0.0529	1.1218	ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-	HGC27_STOMACH	0.07	0.15	1.1747	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RP11-680H20.2--MTSS1	24	20	RP11-680H20.2	1128	chr11:93971443:+	MTSS1	27933	chr8:125568646:-	ONLY_REF_SPLICE	YES	0	66	1	0.4	0.254	0.2117	RP11-680H20.2->chr11:93971316-94012372:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	HGC27_STOMACH	0.4	1	0.4657	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RERE--SLC2A5	22	17	RERE	1484	chr1:8877219:-	SLC2A5	42058	chr1:9145201:-	ONLY_REF_SPLICE	YES	7	1	0.85	0.97	0.2328	0.1799	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC2A5->chr1:9095166-9148537:-,solute_carrier_family_2_member_5	HGC27_STOMACH	0.85	0.97	0.4127	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	EIF3H--RP11-785H20.1	4	78	EIF3H	7051	chr8:117738255:-	RP11-785H20.1	22507	chr8:122897017:+	INCL_NON_REF_SPLICE	YES	1380	0	0.06	1	0.0423	0.8255	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RP11-785H20.1->chr8:122896963-122916512:+	HGC27_STOMACH	0.06	1	0.8678	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	SMCHD1--XPC	19	11	SMCHD1	47614	chr18:2796519:+	XPC	57164	chr3:14214562:-	ONLY_REF_SPLICE	YES	155	168	0.16	0.15	0.2011	0.1164	SMCHD1->chr18:2655737-2805015:+,structural_maintenance_of_chromosomes_flexible_hinge_domain_containing_1,XPC->Oncogene{Bushman},chr3:14186647-14220283:-,xeroderma_pigmentosum,_complementation_group_C	HGC27_STOMACH	0.15	0.16	0.3175	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RP11-114H21.2--CTB-1I21.1	6	62	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	4	0	0.94	1	0.0635	0.6562	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	HGC27_STOMACH	0.94	1	0.7197	TRUE	0	2	0	12	2	TRUE	ACH-000847
HGC27_STOMACH	KIAA1958--LINGO2	18	9	KIAA1958	1272	chr9:115249398:+	LINGO2	21125	chr9:28670278:-	INCL_NON_REF_SPLICE	YES	33	0	0.45	1	0.1905	0.0953	KIAA1958->KIAA1958,chr9:115249127-115431677:+,LINGO2->chr9:27948076-28670283:-,leucine_rich_repeat_and_Ig_domain_containing_2	HGC27_STOMACH	0.45	1	0.2858	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RP11-680H20.2--MTSS1	15	9	RP11-680H20.2	1128	chr11:93971443:+	MTSS1	28434	chr8:125568145:-	ONLY_REF_SPLICE	YES	0	98	1	0.2	0.1588	0.0953	RP11-680H20.2->chr11:93971316-94012372:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	HGC27_STOMACH	0.2	1	0.2541	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	CCS--PACS1	11	19	CCS	1894	chr11:66361185:+	PACS1	23603	chr11:65994975:+	ONLY_REF_SPLICE	YES	170	76	0.15	0.28	0.1164	0.2011	CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	HGC27_STOMACH	0.15	0.28	0.3175	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	FANCC--PTCH1	10	8	FANCC	1184	chr9:98079808:-	PTCH1	41958	chr9:98241429:-	ONLY_REF_SPLICE	YES	112	81	0.14	0.18	0.1058	0.0847	FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-,PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1	HGC27_STOMACH	0.14	0.18	0.1905	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	FANCC--PTCH1	8	9	FANCC	1878	chr9:98079114:-	PTCH1	41958	chr9:98241429:-	ONLY_REF_SPLICE	YES	127	81	0.12	0.17	0.0847	0.0953	FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-,PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1	HGC27_STOMACH	0.12	0.17	0.18	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RERE--SLC2A5	5	18	RERE	1484	chr1:8877219:-	SLC2A5	42034	chr1:9145225:-	ONLY_REF_SPLICE	YES	7	0	0.77	1	0.0529	0.1905	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC2A5->chr1:9095166-9148537:-,solute_carrier_family_2_member_5	HGC27_STOMACH	0.77	1	0.2434	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	SMYD3--RP11-488L18.8	8	4	SMYD3	8315	chr1:246490503:-	RP11-488L18.8	34373	chr1:247375694:-	ONLY_REF_SPLICE	YES	128	0	0.09	1	0.0847	0.0423	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,RP11-488L18.8->chr1:247373993-247405125:-	HGC27_STOMACH	0.09	1	0.127	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	ACIN1--EFS	7	6	ACIN1	2706	chr14:23562688:-	EFS	27906	chr14:23830042:-	ONLY_REF_SPLICE	YES	235	62	0.05	0.17	0.0741	0.0635	{Klijn_CCL:Stomach=1},ACIN1->apoptotic_chromatin_condensation_inducer_1,chr14:23527773-23564823:-,EFS->chr14:23825611-23834961:-,embryonal_Fyn-associated_substrate	HGC27_STOMACH	0.05	0.17	0.1376	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	TATDN1--MTSS1	8	0	TATDN1	1531	chr8:125551169:-	MTSS1	28842	chr8:125597402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0847	0	{Klijn_CCL:Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[11332],TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	HGC27_STOMACH	1	1	0.0847	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MAPT--SPECC1L	6	7	MAPT	1305	chr17:43972052:+	SPECC1L	36028	chr22:24698163:+	ONLY_REF_SPLICE	YES	24	129	0.35	0.09	0.0635	0.0741	MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	HGC27_STOMACH	0.09	0.35	0.1376	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	ARHGAP44--LINC00879	7	0	ARHGAP44	1353	chr17:12693208:+	LINC00879	42159	chr3:94857030:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0741	0	ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+,LINC00879->chr3:94657016-94871353:+,long_intergenic_non-protein_coding_RNA_879	HGC27_STOMACH	1	1	0.0741	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	CCS--PACS1	4	6	CCS	1480	chr11:66360771:+	PACS1	23603	chr11:65994975:+	ONLY_REF_SPLICE	YES	58	76	0.15	0.12	0.0423	0.0635	CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	HGC27_STOMACH	0.12	0.15	0.1058	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RP11-680H20.2--MTSS1	1	17	RP11-680H20.2	1128	chr11:93971443:+	MTSS1	27984	chr8:125568595:-	ONLY_REF_SPLICE	YES	0	67	1	0.21	0.0106	0.1799	RP11-680H20.2->chr11:93971316-94012372:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	HGC27_STOMACH	0.21	1	0.1905	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RERE--SLC2A5	3	7	RERE	1484	chr1:8877219:-	SLC2A5	45894	chr1:9129653:-	ONLY_REF_SPLICE	YES	7	17	0.59	0.37	0.0318	0.0741	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC2A5->chr1:9095166-9148537:-,solute_carrier_family_2_member_5	HGC27_STOMACH	0.37	0.59	0.1059	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	VIM--RPS28	4	0	VIM	2129	chr10:17271386:+	RPS28	12568	chr19:8386405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HGC27_STOMACH	1	1	0.0423	TRUE	0	0	0	4	0	TRUE	ACH-000847
HGC27_STOMACH	BIRC6--SLC30A6	3	2	BIRC6	12083	chr2:32641231:+	SLC30A6	98938	chr2:32431955:+	ONLY_REF_SPLICE	YES	19	84	0.21	0.06	0.0318	0.0212	BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,SLC30A6->chr2:32390933-32449448:+,solute_carrier_family_30_member_6	HGC27_STOMACH	0.06	0.21	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	CSMD3--PVT1	3	0	CSMD3	2839	chr8:114388967:-	PVT1	115603	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	CSMD3->CUB_and_Sushi_multiple_domains_3,Oncogene{Bushman},chr8:113235157-114449328:-,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HGC27_STOMACH	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	PRDM16--SKI	3	0	PRDM16	4812	chr1:3160701:+	SKI	35669	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1]},PRDM16->Oncogene{Bushman},PR_domain_16,chr1:2985732-3355185:+,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	HGC27_STOMACH	1	1	0.0318	TRUE	1	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	SLC7A5--RPL39	3	0	SLC7A5	8058	chr16:87871484:-	RPL39	17596	chrX:118925591:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	HGC27_STOMACH	1	1	0.0318	TRUE	0	0	0	5	0	TRUE	ACH-000847
HGC27_STOMACH	VIM--RPS28	3	0	VIM	2181	chr10:17271438:+	RPS28	12703	chr19:8386540:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HGC27_STOMACH	1	1	0.0318	TRUE	0	0	0	4	0	TRUE	ACH-000847
HGC27_STOMACH	VIM--RPS28	3	0	VIM	2114	chr10:17271371:+	RPS28	12553	chr19:8386390:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HGC27_STOMACH	1	1	0.0318	TRUE	0	0	0	4	0	TRUE	ACH-000847
HGC27_STOMACH	MAPT--SPECC1L	1	7	MAPT	1305	chr17:43972052:+	SPECC1L	34924	chr22:24672668:+	ONLY_REF_SPLICE	NO	24	143	0.25	0.05	0.0106	0.0741	MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	HGC27_STOMACH	0.05	0.25	0.0847	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	LINC00648--MDGA2	2	2	LINC00648	2159	chr14:48259109:-	MDGA2	26120	chr14:47504481:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0212	0.0212	LOCAL_INVERSION:-:-,chr14:[90000],LINC00648->chr14:48234157-48264295:-,long_intergenic_non-protein_coding_RNA_648,MDGA2->MAM_domain_containing_glycosylphosphatidylinositol_anchor_2,chr14:47308826-48144157:-,chr14:47311134-48143999:-	HGC27_STOMACH	0.8	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	SIPA1L3--CTD-2537O9.1	2	2	SIPA1L3	1131	chr19:38397998:+	CTD-2537O9.1	40355	chr11:84473154:+	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.0212	0.0212	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,CTD-2537O9.1->chr11:84431869-84511744:+	HGC27_STOMACH	0.16	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	C17orf76-AS1--PSMG3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PSMG3	14848	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	C17orf76-AS1->chr17:16342136-16381992:+,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	2	0	TRUE	ACH-000847
HGC27_STOMACH	CSMD3--PVT1	2	0	CSMD3	1423	chr8:114448906:-	PVT1	115603	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	CSMD3->CUB_and_Sushi_multiple_domains_3,Oncogene{Bushman},chr8:113235157-114449328:-,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	DANCR--GNB1	2	0	DANCR	1530	chr4:53579126:+	GNB1	9431	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	8	0	TRUE	ACH-000847
HGC27_STOMACH	DANCR--WHSC1	2	0	DANCR	1530	chr4:53579126:+	WHSC1	13532	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	EVI5--USP33	2	0	EVI5	19275	chr1:93089733:-	USP33	35663	chr1:78207433:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	FGFR1OP2--PCID2	2	0	FGFR1OP2	1328	chr12:27091643:+	PCID2	17348	chr13:113854830:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,PCID2->PCI_domain_containing_2,chr13:113831891-113863029:-	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MACROD1--ZBTB7A	2	0	MACROD1	3565	chr11:63918711:-	ZBTB7A	16398	chr19:4055245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MTAP--CDKN2A	2	0	MTAP	9899	chr9:21854869:+	CDKN2A	29087	chr9:21971207:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	LOCAL_INVERSION:+:-:[36105],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	PACS2--PCNXL4	2	0	PACS2	5362	chr14:105814917:+	PCNXL4	40146	chr14:60582437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2,PCNXL4->chr14:60558629-60635851:+	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	SUMF2--SMURF1	2	0	SUMF2	1377	chr7:56132071:+	SMURF1	19705	chr7:98655174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	TMEM18--FKBP8	2	0	TMEM18	1151	chr2:677289:-	FKBP8	13709	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	TMEM18->chr2:667335-677439:-,transmembrane_protein_18,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	TMEM18--PTMA	2	0	TMEM18	1151	chr2:677289:-	PTMA	16051	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	TMEM18->chr2:667335-677439:-,transmembrane_protein_18,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	2	0	TRUE	ACH-000847
HGC27_STOMACH	U2AF1--PKNOX1	2	0	U2AF1	1137	chr21:44527561:-	PKNOX1	18796	chr21:44424436:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[59375],U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-,PKNOX1->Oncogene{Bushman},PBX/knotted_1_homeobox_1,chr21:44394620-44453691:+	HGC27_STOMACH	1	1	0.0212	TRUE	0	1	0	3	0	TRUE	ACH-000847
NCIH1869_LUNG	SMURF2--LRRC37A3	81	30	SMURF2	12083	chr17:62574610:-	LRRC37A3	43724	chr17:62865284:-	ONLY_REF_SPLICE	YES	112	2	0.5	0.98	0.7097	0.2628	{Klijn_CCL:Lung=1},SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	NCIH1869_LUNG	0.5	0.98	0.9725	TRUE	0	1	0	1	1	TRUE	ACH-000894
NCIH1869_LUNG	HAUS3--ADD1	10	2	HAUS3	9852	chr4:2230826:-	ADD1	39876	chr4:2927741:+	INCL_NON_REF_SPLICE	YES	3	31	0.8	0.28	0.0876	0.0175	HAUS3->HAUS_augmin_like_complex_subunit_3,chr4:2229191-2243891:-,ADD1->adducin_1,chr4:2845584-2931803:+	NCIH1869_LUNG	0.28	0.8	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000894
NCIH1869_LUNG	SMURF2--LRRC37A3	4	7	SMURF2	12083	chr17:62574610:-	LRRC37A3	45996	chr17:62859136:-	ONLY_REF_SPLICE	YES	112	16	0.09	0.41	0.035	0.0613	{Klijn_CCL:Lung=1},SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	NCIH1869_LUNG	0.09	0.41	0.0963	TRUE	0	1	0	1	1	TRUE	ACH-000894
NCIH1869_LUNG	VAV2--ADD1	5	3	VAV2	21139	chr9:136650898:-	ADD1	64950	chr4:2927741:+	ONLY_REF_SPLICE	YES	3	31	0.73	0.21	0.0438	0.0263	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,ADD1->adducin_1,chr4:2845584-2931803:+	NCIH1869_LUNG	0.21	0.73	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000894
NCIH1869_LUNG	HTT--MYL5	5	2	HTT	6892	chr4:3109150:+	MYL5	81993	chr4:674298:+	ONLY_REF_SPLICE	YES	1	19	0.88	0.27	0.0438	0.0175	HTT->chr4:3076408-3245676:+,huntingtin,MYL5->chr4:667369-675822:+,myosin_light_chain_5	NCIH1869_LUNG	0.27	0.88	0.0613	TRUE	0	0	0	1	0	TRUE	ACH-000894
NCIH1869_LUNG	RNF170--RP11-238K6.1	4	1	RNF170	6478	chr8:42725147:-	RP11-238K6.1	20086	chr8:138850128:-	ONLY_REF_SPLICE	YES	47	0	0.1	1	0.035	0.0088	RNF170->chr8:42704780-42752433:-,ring_finger_protein_170,RP11-238K6.1->chr8:138821687-139095813:-	NCIH1869_LUNG	0.1	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000894
NCIH1869_LUNG	VAV2--POLN	4	0	VAV2	21139	chr9:136650898:-	POLN	42363	chr4:2230970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,POLN->chr4:2073645-2243848:-,polymerase_(DNA)_nu	NCIH1869_LUNG	1	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000894
NCIH1869_LUNG	NRP1--PARD3	3	0	NRP1	4012	chr10:33619636:-	PARD3	64705	chr10:34420511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Kidney=[count:1=pct:7.1],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Kidney_-_Cortex=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Lung=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	NCIH1869_LUNG	1	1	0.0263	TRUE	0	3	0	3	0	TRUE	ACH-000894
NCIH1869_LUNG	RNF146--PHF10	2	0	RNF146	2596	chr6:127601485:+	PHF10	24223	chr6:170105820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	RNF146->chr6:127587755-127609712:+,ring_finger_protein_146,PHF10->PHD_finger_protein_10,chr6:170104001-170124151:-	NCIH1869_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000894
HMC18_BREAST	RPS6KB1--VMP1	1312	754	RPS6KB1	8493	chr17:58003943:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	679	1397	0.75	0.6	14.3114	8.2247	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.6	0.75	22.5361	TRUE	0	1	0	2	1	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	278	897	RPS6KB1	16932	chr17:58022879:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	613	1397	0.66	0.46	3.0324	9.7845	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.46	0.66	12.8169	TRUE	0	0	0	2	0	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	194	271	RPS6KB1	7326	chr17:57992064:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	1016	1397	0.31	0.25	2.1162	2.9561	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.25	0.31	5.0723	TRUE	0	4	1	7	3	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	2	825	RPS6KB1	15604	chr17:58018304:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	505	1397	0.62	0.37	0.0218	8.9992	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.37	0.62	9.021	TRUE	0	0	0	3	0	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	3	784	RPS6KB1	8493	chr17:58003943:+	VMP1	28174	chr17:57808782:+	ONLY_REF_SPLICE	YES	679	128	0.54	0.86	0.0327	8.5519	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.54	0.86	8.5846	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	TFB1M--NOX3	87	33	TFB1M	3508	chr6:155632322:-	NOX3	18961	chr6:155764552:-	ONLY_REF_SPLICE	YES	161	51	0.43	0.7	0.949	0.36	LOCAL_REARRANGEMENT:-:[80877],TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,NOX3->NADPH_oxidase_3,chr6:155716504-155777037:-	HMC18_BREAST	0.43	0.7	1.309	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	ABL1--FUBP3	77	20	ABL1	1510	chr9:133589842:+	FUBP3	25056	chr9:133485341:+	ONLY_REF_SPLICE	YES	47	107	0.67	0.48	0.8399	0.2182	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:+:[75594],ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	HMC18_BREAST	0.48	0.67	1.0581	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	TFB1M--NOX3	57	55	TFB1M	9513	chr6:155606292:-	NOX3	22419	chr6:155752069:-	ONLY_REF_SPLICE	YES	62	14	0.64	0.89	0.6218	0.5999	LOCAL_REARRANGEMENT:-:[80877],TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,NOX3->NADPH_oxidase_3,chr6:155716504-155777037:-	HMC18_BREAST	0.64	0.89	1.2217	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	SREBF1--TOM1L2	64	24	SREBF1	7293	chr17:17720272:-	TOM1L2	19099	chr17:17801988:-	ONLY_REF_SPLICE	YES	297	30	0.23	0.75	0.6981	0.2618	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[6503],SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1,TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein	HMC18_BREAST	0.23	0.75	0.9599	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	ZDHHC20--MYO16	54	25	ZDHHC20	1317	chr13:22033193:-	MYO16	21414	chr13:109318234:+	ONLY_REF_SPLICE	YES	58	0	0.58	1	0.589	0.2727	ZDHHC20->chr13:21950263-22033509:-,zinc_finger_DHHC-type_containing_20,MYO16->chr13:109248500-109860355:+,myosin_XVI	HMC18_BREAST	0.58	1	0.8617	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	KRR1--RP11-114H23.2	48	42	KRR1	8727	chr12:75893593:-	RP11-114H23.2	15747	chr12:76088755:-	INCL_NON_REF_SPLICE	YES	687	0	0.12	1	0.5236	0.4581	KRR1->KRR1,_small_subunit_processome_component_homolog,chr12:75890684-75905416:-,RP11-114H23.2->chr12:76087790-76092596:-	HMC18_BREAST	0.12	1	0.9817	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MON2--USP15	40	25	MON2	1502	chr12:62861098:+	USP15	68244	chr12:62775271:+	ONLY_REF_SPLICE	YES	56	70	0.54	0.48	0.4363	0.2727	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[49386],MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+,USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15	HMC18_BREAST	0.48	0.54	0.709	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	26	38	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	1262	1063	0.05	0.06	0.2836	0.4145	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.05	0.06	0.6981	TRUE	0	9	0	10	6	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	22	46	RPS6KB1	1240	chr17:57970686:+	VMP1	28174	chr17:57808782:+	ONLY_REF_SPLICE	YES	1262	128	0.05	0.35	0.24	0.5018	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.05	0.35	0.7418	TRUE	0	1	0	3	1	TRUE	ACH-000721
HMC18_BREAST	FAM133B--CDK6	25	10	FAM133B	7228	chr7:92206417:-	CDK6	23335	chr7:92300849:-	ONLY_REF_SPLICE	YES	53	9	0.4	0.8	0.2727	0.1091	{Klijn_CCL:Lymphoid=2,Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[14527],FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B,CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6	HMC18_BREAST	0.4	0.8	0.3818	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	TFB1M--NOX3	3	94	TFB1M	12519	chr6:155578906:-	NOX3	18961	chr6:155764552:-	INCL_NON_REF_SPLICE	YES	2	51	0.98	0.66	0.0327	1.0254	LOCAL_REARRANGEMENT:-:[80877],TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,NOX3->NADPH_oxidase_3,chr6:155716504-155777037:-	HMC18_BREAST	0.66	0.98	1.0581	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	CCAT1--CASC8	19	29	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	155	0	0.24	1	0.2073	0.3163	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HMC18_BREAST	0.24	1	0.5236	TRUE	0	7	0	14	6	TRUE	ACH-000721
HMC18_BREAST	TFB1M--NOX3	10	59	TFB1M	9513	chr6:155606292:-	NOX3	21289	chr6:155757681:-	ONLY_REF_SPLICE	YES	62	21	0.53	0.77	0.1091	0.6436	LOCAL_REARRANGEMENT:-:[80877],TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,NOX3->NADPH_oxidase_3,chr6:155716504-155777037:-	HMC18_BREAST	0.53	0.77	0.7527	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	CCAT1--CASC8	17	21	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	155	7	0.2	0.84	0.1854	0.2291	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HMC18_BREAST	0.2	0.84	0.4145	TRUE	0	26	0	18	24	TRUE	ACH-000721
HMC18_BREAST	MARK2--STIP1	22	1	MARK2	1633	chr11:63607032:+	STIP1	27377	chr11:63960550:+	ONLY_REF_SPLICE	YES	16	40	0.59	0.37	0.24	0.0109	MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2,STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1	HMC18_BREAST	0.37	0.59	0.2509	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	KRR1--RP11-114H23.2	14	32	KRR1	8727	chr12:75893593:-	RP11-114H23.2	15775	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	687	0	0.06	1	0.1527	0.3491	KRR1->KRR1,_small_subunit_processome_component_homolog,chr12:75890684-75905416:-,RP11-114H23.2->chr12:76087790-76092596:-	HMC18_BREAST	0.06	1	0.5018	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	9	46	RPS6KB1	1240	chr17:57970686:+	VMP1	25282	chr17:57784888:+	ONLY_REF_SPLICE	YES	1262	0	0.04	1	0.0982	0.5018	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.04	1	0.6	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RPL23AP7--SLC35F5	18	4	RPL23AP7	2382	chr2:114383186:-	SLC35F5	30326	chr2:114463125:-	ONLY_REF_SPLICE	YES	29	8	0.43	0.73	0.1963	0.0436	LOCAL_REARRANGEMENT:-:[77921],RPL23AP7->chr2:114368079-114384667:-,ribosomal_protein_L23a_pseudogene_7,SLC35F5->chr2:114462588-114514400:-,solute_carrier_family_35_member_F5	HMC18_BREAST	0.43	0.73	0.2399	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MON2--USP15	11	30	MON2	1502	chr12:62861098:+	USP15	67098	chr12:62768171:+	ONLY_REF_SPLICE	YES	56	69	0.42	0.37	0.12	0.3272	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[49386],MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+,USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15	HMC18_BREAST	0.37	0.42	0.4472	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	TFB1M--NOX3	10	32	TFB1M	9513	chr6:155606292:-	NOX3	23512	chr6:155750181:-	ONLY_REF_SPLICE	YES	62	19	0.4	0.69	0.1091	0.3491	LOCAL_REARRANGEMENT:-:[80877],TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,NOX3->NADPH_oxidase_3,chr6:155716504-155777037:-	HMC18_BREAST	0.4	0.69	0.4582	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	CTA-85E5.10--RP1-130H16.18	14	10	CTA-85E5.10	1353	chr22:30476117:-	RP1-130H16.18	11479	chr22:30691832:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1527	0.1091	CTA-85E5.10->chr22:30404731-30476469:-,RP1-130H16.18->chr22:30681227-30695471:-	HMC18_BREAST	1	1	0.2618	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	ACSS2--AHCY	13	12	ACSS2	4738	chr20:33464626:+	AHCY	26585	chr20:32883391:-	ONLY_REF_SPLICE	YES	84	542	0.23	0.04	0.1418	0.1309	ACSS2->acyl-CoA_synthetase_short-chain_family_member_2,chr20:33459949-33515769:+,AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-	HMC18_BREAST	0.04	0.23	0.2727	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MACROD1--RP11-783K16.13	15	3	MACROD1	3565	chr11:63918711:-	RP11-783K16.13	14778	chr11:64016070:-	ONLY_REF_SPLICE	YES	114	0	0.14	1	0.1636	0.0327	LOCAL_REARRANGEMENT:-:[80833],MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,RP11-783K16.13->chr11:64014411-64016966:-	HMC18_BREAST	0.14	1	0.1963	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	SH3KBP1--CXorf23	14	2	SH3KBP1	1295	chrX:19905425:-	CXorf23	34890	chrX:19988416:-	ONLY_REF_SPLICE	YES	51	0	0.24	1	0.1527	0.0218	LOCAL_REARRANGEMENT:-:[25259],SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-,CXorf23->chrX:19930978-19988416:-,chromosome_X_open_reading_frame_23	HMC18_BREAST	0.24	1	0.1745	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	AC093388.3--MFSD6	11	4	AC093388.3	1267	chr2:191399847:+	MFSD6	14457	chr2:191334484:+	ONLY_REF_SPLICE	YES	1	31	0.94	0.33	0.12	0.0436	LOCAL_REARRANGEMENT:+:[25650],AC093388.3->chr2:191399581-191432828:+,MFSD6->chr2:191273081-191373931:+,major_facilitator_superfamily_domain_containing_6	HMC18_BREAST	0.33	0.94	0.1636	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	SLC39A11--CDC42EP4	8	16	SLC39A11	5036	chr17:71080947:-	CDC42EP4	33207	chr17:71282751:-	ONLY_REF_SPLICE	YES	62	11	0.28	0.69	0.0873	0.1745	SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,CDC42EP4->CDC42_effector_protein_4,chr17:71279763-71308314:-	HMC18_BREAST	0.28	0.69	0.2618	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	2	39	RPS6KB1	1240	chr17:57970686:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	1262	1042	0.03	0.04	0.0218	0.4254	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.03	0.04	0.4472	TRUE	0	2	0	6	2	TRUE	ACH-000721
HMC18_BREAST	ABL1--FUBP3	6	20	ABL1	1510	chr9:133589842:+	FUBP3	25059	chr9:133485344:+	INCL_NON_REF_SPLICE	YES	47	104	0.36	0.2	0.0654	0.2182	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:+:[75594],ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	HMC18_BREAST	0.2	0.36	0.2836	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	ARFGEF2--C20orf62	10	1	ARFGEF2	1121	chr20:47538547:+	C20orf62	47086	chr20:43080813:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.1091	0.0109	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,C20orf62->chr20:43080624-43093984:-	HMC18_BREAST	0.79	1	0.12	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	2	33	RPS6KB1	1240	chr17:57970686:+	VMP1	36266	chr17:57889031:+	ONLY_REF_SPLICE	YES	1262	902	0.03	0.04	0.0218	0.36	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.03	0.04	0.3818	TRUE	0	6	0	2	3	TRUE	ACH-000721
HMC18_BREAST	ABL1--FUBP3	6	14	ABL1	1510	chr9:133589842:+	FUBP3	26090	chr9:133487843:+	ONLY_REF_SPLICE	YES	47	86	0.3	0.19	0.0654	0.1527	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:+:[75594],ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	HMC18_BREAST	0.19	0.3	0.2181	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	DENND5A--SBF2	8	6	DENND5A	1430	chr11:9286508:-	SBF2	75479	chr11:9838571:-	ONLY_REF_SPLICE	YES	82	56	0.15	0.2	0.0873	0.0654	HGNC_GENEFAM,DENND5A->DENN_domain_containing_5A,chr11:9160372-9286937:-,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	HMC18_BREAST	0.15	0.2	0.1527	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	CCAT1--CASC8	3	23	CCAT1	1274	chr8:128231060:-	CASC8	14106	chr8:128335399:-	INCL_NON_REF_SPLICE	YES	127	0	0.17	1	0.0327	0.2509	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HMC18_BREAST	0.17	1	0.2836	TRUE	0	7	0	14	6	TRUE	ACH-000721
HMC18_BREAST	STT3B--TRIM71	8	2	STT3B	6612	chr3:31641951:+	TRIM71	27138	chr3:32927426:+	ONLY_REF_SPLICE	YES	93	0	0.1	1	0.0873	0.0218	STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+,TRIM71->chr3:32859510-32939318:+,tripartite_motif_containing_71,_E3_ubiquitin_protein_ligase	HMC18_BREAST	0.1	1	0.1091	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	CCAT1--CASC8	4	16	CCAT1	1274	chr8:128231060:-	CASC8	15246	chr8:128302305:-	INCL_NON_REF_SPLICE	YES	127	7	0.14	0.74	0.0436	0.1745	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HMC18_BREAST	0.14	0.74	0.2181	TRUE	0	26	0	18	24	TRUE	ACH-000721
HMC18_BREAST	NDFIP2--NALCN	7	4	NDFIP2	3717	chr13:80095110:+	NALCN	27831	chr13:101910925:-	ONLY_REF_SPLICE	YES	213	0	0.05	1	0.0764	0.0436	NDFIP2->Nedd4_family_interacting_protein_2,chr13:80055287-80130210:+,NALCN->chr13:101706130-102068843:-,sodium_leak_channel,_non-selective	HMC18_BREAST	0.05	1	0.12	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	2	23	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	1262	1265	0.02	0.02	0.0218	0.2509	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.02	0.02	0.2727	TRUE	0	9	0	11	6	TRUE	ACH-000721
HMC18_BREAST	TFB1M--NOX3	6	7	TFB1M	9513	chr6:155606292:-	NOX3	25929	chr6:155732494:-	ONLY_REF_SPLICE	YES	62	14	0.17	0.48	0.0654	0.0764	LOCAL_REARRANGEMENT:-:[80877],TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,NOX3->NADPH_oxidase_3,chr6:155716504-155777037:-	HMC18_BREAST	0.17	0.48	0.1418	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	CEP192--IMPA2	7	1	CEP192	36086	chr18:13095680:+	IMPA2	60281	chr18:12028042:+	ONLY_REF_SPLICE	YES	48	60	0.14	0.12	0.0764	0.0109	CEP192->centrosomal_protein_192,chr18:12991361-13125051:+,IMPA2->chr18:11981024-12030876:+,inositol_monophosphatase_2	HMC18_BREAST	0.12	0.14	0.0873	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RP11-443N24.2--RP11-443N24.3	7	1	RP11-443N24.2	2217	chr12:25954629:-	RP11-443N24.3	6829	chr12:25987060:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0764	0.0109	LOCAL_REARRANGEMENT:-:[17245],RP11-443N24.2->chr12:25935640-25967105:-,RP11-443N24.3->chr12:25984350-25987116:-	HMC18_BREAST	1	1	0.0873	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	XRN1--ATR	5	7	XRN1	21441	chr3:142116171:-	ATR	94557	chr3:142178225:-	ONLY_REF_SPLICE	YES	24	63	0.33	0.16	0.0545	0.0764	LOCAL_REARRANGEMENT:-:[1173],XRN1->5'-3'_exoribonuclease_1,chr3:142025449-142166904:-,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	HMC18_BREAST	0.16	0.33	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	ABL1--FUBP3	3	14	ABL1	1510	chr9:133589842:+	FUBP3	26590	chr9:133488343:+	ONLY_REF_SPLICE	YES	47	122	0.27	0.12	0.0327	0.1527	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:+:[75594],ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	HMC18_BREAST	0.12	0.27	0.1854	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RP11-133F8.2--CTC-529L17.2	6	1	RP11-133F8.2	5568	chr5:91843055:-	CTC-529L17.2	11897	chr5:92012257:-	ONLY_REF_SPLICE	YES	1	2	0.88	0.78	0.0654	0.0109	LOCAL_REARRANGEMENT:-:[15093],RP11-133F8.2->chr5:91745963-91996570:-,CTC-529L17.2->chr5:92011663-92023961:-	HMC18_BREAST	0.78	0.88	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	SLC39A11--CDC42EP4	1	19	SLC39A11	6205	chr17:71069806:-	CDC42EP4	33207	chr17:71282751:-	ONLY_REF_SPLICE	YES	62	11	0.24	0.65	0.0109	0.2073	SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,CDC42EP4->CDC42_effector_protein_4,chr17:71279763-71308314:-	HMC18_BREAST	0.24	0.65	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	ARFGEF2--RP5-1013A22.2	4	1	ARFGEF2	1121	chr20:47538547:+	RP5-1013A22.2	44388	chr20:43078730:-	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0436	0.0109	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,RP5-1013A22.2->chr20:43077417-43078732:-	HMC18_BREAST	0.62	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RP11-255B23.4--CASC8	4	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	14642	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HMC18_BREAST	1	1	0.0436	TRUE	0	9	0	3	9	TRUE	ACH-000721
HMC18_BREAST	SGSM3--TBC1D22A	4	0	SGSM3	1098	chr22:40766692:+	TBC1D22A	24953	chr22:47287162:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	SGSM3->chr22:40766595-40806293:+,small_G_protein_signaling_modulator_3,TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+	HMC18_BREAST	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RP11-30J20.1--EFR3A	3	1	RP11-30J20.1	2293	chr8:137549302:+	EFR3A	21585	chr8:132952746:+	ONLY_REF_SPLICE	YES	3	84	0.57	0.05	0.0327	0.0109	RP11-30J20.1->chr8:137543041-137997178:+,EFR3A->EFR3_homolog_A,chr8:132916335-133025889:+	HMC18_BREAST	0.05	0.57	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	AC093388.3--MFSD6	2	4	AC093388.3	2133	chr2:191400713:+	MFSD6	14457	chr2:191334484:+	ONLY_REF_SPLICE	YES	0	31	1	0.16	0.0218	0.0436	LOCAL_REARRANGEMENT:+:[25650],AC093388.3->chr2:191399581-191432828:+,MFSD6->chr2:191273081-191373931:+,major_facilitator_superfamily_domain_containing_6	HMC18_BREAST	0.16	1	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	ERRFI1--ENO1	3	0	ERRFI1	1151	chr1:8086218:-	ENO1	12316	chr1:8934976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	HMC18_BREAST	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RP11-255B23.4--CASC8	3	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	13502	chr8:128335399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HMC18_BREAST	1	1	0.0327	TRUE	0	0	0	3	0	TRUE	ACH-000721
HMC18_BREAST	NEBL--RP11-275N1.1	2	2	NEBL	2518	chr10:21461312:-	RP11-275N1.1	53930	chr10:21629242:-	ONLY_REF_SPLICE	YES	19	7	0.17	0.36	0.0218	0.0218	NEBL->chr10:21068902-21463116:-,nebulette,RP11-275N1.1->chr10:21629162-21661879:-	HMC18_BREAST	0.17	0.36	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	NEBL--RP11-275N1.1	2	2	NEBL	2518	chr10:21461312:-	RP11-275N1.1	50628	chr10:21659044:-	ONLY_REF_SPLICE	YES	19	13	0.17	0.24	0.0218	0.0218	NEBL->chr10:21068902-21463116:-,nebulette,RP11-275N1.1->chr10:21629162-21661879:-	HMC18_BREAST	0.17	0.24	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	GGT7--ITCH	2	0	GGT7	1214	chr20:33460450:-	ITCH	18075	chr20:32957200:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GGT7->chr20:33432523-33460663:-,gamma-glutamyltransferase_7,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	HMC18_BREAST	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	HIBADH--FUS	2	0	HIBADH	6024	chr7:27668990:-	FUS	21369	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	HMC18_BREAST	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	IMMP2L--AC003088.1	2	0	IMMP2L	4976	chr7:111127294:-	AC003088.1	22075	chr7:110072963:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	HMC18_BREAST	1	1	0.0218	TRUE	0	2	0	1	2	TRUE	ACH-000721
HMC18_BREAST	IMMP2L--AC003088.1	2	0	IMMP2L	4976	chr7:111127294:-	AC003088.1	19914	chr7:110165618:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	HMC18_BREAST	1	1	0.0218	TRUE	0	2	0	2	2	TRUE	ACH-000721
HMC18_BREAST	RP11-326C3.7--TAGLN2	2	0	RP11-326C3.7	1107	chr11:311035:-	TAGLN2	8301	chr1:159890327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	RP11-326C3.7->chr11:310139-311141:-,TAGLN2->chr1:159887897-159895522:-,transgelin_2	HMC18_BREAST	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	SLC38A1--RP11-474P2.4	2	0	SLC38A1	2492	chr12:46662309:-	RP11-474P2.4	30874	chr12:46778451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1,RP11-474P2.4->chr12:46778016-46780774:-	HMC18_BREAST	1	1	0.0218	TRUE	0	1	0	1	1	TRUE	ACH-000721
HMC18_BREAST	SLCO4A1--BEST2	2	0	SLCO4A1	1109	chr20:61273905:+	BEST2	20711	chr19:12865366:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,BEST2->bestrophin_2,chr19:12862516-12869272:+	HMC18_BREAST	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	NEBL--RP11-275N1.1	1	2	NEBL	2518	chr10:21461312:-	RP11-275N1.1	52836	chr10:21643693:-	ONLY_REF_SPLICE	YES	19	7	0.14	0.3	0.0109	0.0218	NEBL->chr10:21068902-21463116:-,nebulette,RP11-275N1.1->chr10:21629162-21661879:-	HMC18_BREAST	0.14	0.3	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	KIAA1551--LINC00943	1	1	KIAA1551	2502	chr12:32113805:+	LINC00943	20610	chr12:127227286:+	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.0109	0.0109	KIAA1551->KIAA1551,chr12:32112304-32146039:+,LINC00943->chr12:127210816-127230798:+,long_intergenic_non-protein_coding_RNA_943	HMC18_BREAST	0.05	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RP11-385J1.2--C3orf20	1	1	RP11-385J1.2	7023	chr3:178466192:-	C3orf20	25996	chr3:14763160:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0109	0.0109	RP11-385J1.2->chr3:178244293-178578193:-,C3orf20->chr3:14716606-14814541:+,chromosome_3_open_reading_frame_20	HMC18_BREAST	0.5	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	SH3KBP1--CXorf23	1	1	SH3KBP1	1295	chrX:19905425:-	CXorf23	35965	chrX:19984767:-	ONLY_REF_SPLICE	YES	51	0	0.04	1	0.0109	0.0109	LOCAL_REARRANGEMENT:-:[25259],SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-,CXorf23->chrX:19930978-19988416:-,chromosome_X_open_reading_frame_23	HMC18_BREAST	0.04	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
EWS502_BONE	TICRR--EWSR1	402	199	TICRR	15508	chr15:90152180:+	EWSR1	46061	chr22:29688126:+	ONLY_REF_SPLICE	YES	50	340	0.92	0.64	4.3485	2.1526	TICRR->TOPBP1_interacting_checkpoint_and_replication_regulator,chr15:90118713-90174287:+,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	EWS502_BONE	0.64	0.92	6.5011	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	EWSR1--FLI1	210	175	EWSR1	11554	chr22:29683123:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	686	16	0.36	0.96	2.2716	1.893	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.36	0.96	4.1646	TRUE	0	0	0	6	0	TRUE	ACH-000279
EWS502_BONE	PHF21A--ELF1	101	92	PHF21A	9462	chr11:46100685:-	ELF1	39366	chr13:41533152:-	ONLY_REF_SPLICE	YES	59	32	0.77	0.86	1.0925	0.9952	PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-,ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-	EWS502_BONE	0.77	0.86	2.0877	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	PDZD8--TRIP12	80	34	PDZD8	2112	chr10:119133867:-	TRIP12	21946	chr2:230724290:-	ONLY_REF_SPLICE	YES	14	79	0.89	0.59	0.8654	0.3678	PDZD8->PDZ_domain_containing_8,chr10:119040000-119134978:-,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	EWS502_BONE	0.59	0.89	1.2332	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TRIP12--SHOC2	65	44	TRIP12	5100	chr2:230744698:-	SHOC2	54295	chr10:112723883:+	ONLY_REF_SPLICE	YES	71	5	0.61	0.96	0.7031	0.476	TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12,SHOC2->SHOC2_leucine-rich_repeat_scaffold_protein,chr10:112679301-112773425:+	EWS502_BONE	0.61	0.96	1.1791	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	EWSR1--FLI1	23	182	EWSR1	12735	chr22:29684775:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	211	16	0.49	0.93	0.2488	1.9687	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.49	0.93	2.2175	TRUE	0	0	0	2	0	TRUE	ACH-000279
EWS502_BONE	SMAP1--AKIRIN2	58	34	SMAP1	1366	chr6:71377844:+	AKIRIN2	23470	chr6:88391481:-	ONLY_REF_SPLICE	YES	45	219	0.67	0.3	0.6274	0.3678	SMAP1->Oncogene{Bushman},chr6:71377479-71571718:+,small_ArfGAP_1,AKIRIN2->akirin_2,chr6:88384790-88411927:-	EWS502_BONE	0.3	0.67	0.9952	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TICRR--EWSR1	10	201	TICRR	15508	chr15:90152180:+	EWSR1	45486	chr22:29687551:+	ONLY_REF_SPLICE	YES	50	333	0.81	0.39	0.1082	2.1743	TICRR->TOPBP1_interacting_checkpoint_and_replication_regulator,chr15:90118713-90174287:+,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	EWS502_BONE	0.39	0.81	2.2825	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TICRR--EWSR1	3	201	TICRR	15508	chr15:90152180:+	EWSR1	45489	chr22:29687554:+	ONLY_REF_SPLICE	YES	50	328	0.8	0.38	0.0325	2.1743	TICRR->TOPBP1_interacting_checkpoint_and_replication_regulator,chr15:90118713-90174287:+,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	EWS502_BONE	0.38	0.8	2.2068	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	EWSR1--FLI1	4	175	EWSR1	11554	chr22:29683123:+	FLI1	36176	chr11:128673783:+	INCL_NON_REF_SPLICE	YES	686	1	0.21	0.99	0.0433	1.893	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.21	0.99	1.9363	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	EWSR1--FLI1	1	180	EWSR1	12704	chr22:29684744:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	197	16	0.48	0.92	0.0108	1.9471	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.48	0.92	1.9579	TRUE	0	0	0	2	0	TRUE	ACH-000279
EWS502_BONE	PDZD8--TRIP12	21	39	PDZD8	2112	chr10:119133867:-	TRIP12	20989	chr2:230725247:-	ONLY_REF_SPLICE	YES	14	78	0.81	0.43	0.2272	0.4219	PDZD8->PDZ_domain_containing_8,chr10:119040000-119134978:-,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	EWS502_BONE	0.43	0.81	0.6491	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	CNOT8--ANXA6	20	29	CNOT8	2216	chr5:154238328:+	ANXA6	33470	chr5:150506041:-	ONLY_REF_SPLICE	YES	211	403	0.19	0.11	0.2163	0.3137	CNOT8->CCR4-NOT_transcription_complex_subunit_8,chr5:154237113-154256353:+,ANXA6->annexin_A6,chr5:150480273-150537443:-	EWS502_BONE	0.11	0.19	0.53	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	EWSR1--FLI1	1	102	EWSR1	12735	chr22:29684775:+	FLI1	39468	chr11:128677075:+	ONLY_REF_SPLICE	NO	211	20	0.33	0.84	0.0108	1.1034	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.33	0.84	1.1142	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	EWSR1--FLI1	2	97	EWSR1	11554	chr22:29683123:+	FLI1	39468	chr11:128677075:+	ONLY_REF_SPLICE	YES	686	20	0.13	0.83	0.0216	1.0493	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.13	0.83	1.0709	TRUE	0	0	0	4	0	TRUE	ACH-000279
EWS502_BONE	AP000783.1--CCDC15	18	8	AP000783.1	1817	chr11:123301874:+	CCDC15	20367	chr11:124908327:+	ONLY_REF_SPLICE	YES	0	9	1	0.74	0.1947	0.0865	AP000783.1->chr11:123301058-123306427:+,CCDC15->chr11:124824017-124911385:+,coiled-coil_domain_containing_15	EWS502_BONE	0.74	1	0.2812	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	HNRNPF--PTPN20A	17	0	HNRNPF	1036	chr10:43904579:-	PTPN20A	28624	chr10:46552531:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1839	0	HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,PTPN20A->chr10:46549955-46641045:-	EWS502_BONE	1	1	0.1839	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	EWSR1--FLI1	1	59	EWSR1	11554	chr22:29683123:+	FLI1	40528	chr11:128679052:+	ONLY_REF_SPLICE	YES	686	90	0.08	0.4	0.0108	0.6382	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.08	0.4	0.649	TRUE	0	0	0	5	0	TRUE	ACH-000279
EWS502_BONE	PHF21A--ELF1	1	48	PHF21A	7818	chr11:46105717:-	ELF1	39366	chr13:41533152:-	ONLY_REF_SPLICE	YES	42	32	0.54	0.6	0.0108	0.5192	PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-,ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-	EWS502_BONE	0.54	0.6	0.53	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TRIP12--SHOC2	1	45	TRIP12	5100	chr2:230744698:-	SHOC2	53110	chr10:112711366:+	ONLY_REF_SPLICE	YES	71	2	0.39	0.96	0.0108	0.4868	TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12,SHOC2->SHOC2_leucine-rich_repeat_scaffold_protein,chr10:112679301-112773425:+	EWS502_BONE	0.39	0.96	0.4976	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ST3GAL3--GUCY1B2	10	6	ST3GAL3	5679	chr1:44257820:+	GUCY1B2	27054	chr13:51640293:-	ONLY_REF_SPLICE	YES	49	0	0.25	1	0.1082	0.0649	ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,GUCY1B2->chr13:51568647-51654998:-,guanylate_cyclase_1,_soluble,_beta_2_(pseudogene)	EWS502_BONE	0.25	1	0.1731	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TYW3--ATP13A5	9	8	TYW3	4564	chr1:75204472:+	ATP13A5	24289	chr3:193062864:-	ONLY_REF_SPLICE	YES	166	0	0.09	1	0.0974	0.0865	TYW3->chr1:75198836-75232362:+,tRNA-yW_synthesizing_protein_3_homolog,ATP13A5->ATPase_13A5,chr3:192992579-193096632:-	EWS502_BONE	0.09	1	0.1839	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ST3GAL3--GUCY1B2	8	3	ST3GAL3	5679	chr1:44257820:+	GUCY1B2	28261	chr13:51637030:-	ONLY_REF_SPLICE	YES	49	2	0.18	0.85	0.0865	0.0325	ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,GUCY1B2->chr13:51568647-51654998:-,guanylate_cyclase_1,_soluble,_beta_2_(pseudogene)	EWS502_BONE	0.18	0.85	0.119	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	MKL2--LINC00237	8	1	MKL2	20796	chr16:14312855:+	LINC00237	43552	chr20:21074493:-	ONLY_REF_SPLICE	YES	17	0	0.35	1	0.0865	0.0108	MKL2->MKL1/myocardin_like_2,chr16:14165178-14360630:+,LINC00237->chr20:21068245-21086999:-,long_intergenic_non-protein_coding_RNA_237	EWS502_BONE	0.35	1	0.0973	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	CAPZB--SORCS2	8	0	CAPZB	1137	chr1:19811930:-	SORCS2	25158	chr4:7655861:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0865	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,SORCS2->chr4:7194265-7744554:+,sortilin_related_VPS10_domain_containing_receptor_2	EWS502_BONE	1	1	0.0865	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ARHGEF12--CDC42BPG	7	2	ARHGEF12	1198	chr11:120207984:+	CDC42BPG	58977	chr11:64608120:-	ONLY_REF_SPLICE	YES	42	5	0.18	0.64	0.0757	0.0216	ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+,CDC42BPG->CDC42_binding_protein_kinase_gamma,chr11:64590859-64612041:-	EWS502_BONE	0.18	0.64	0.0973	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	PPP6R2--TMEM62	6	4	PPP6R2	7083	chr22:50845304:+	TMEM62	41045	chr15:43461791:+	ONLY_REF_SPLICE	YES	97	1	0.09	0.91	0.0649	0.0433	PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2,TMEM62->chr15:43415477-43477344:+,transmembrane_protein_62	EWS502_BONE	0.09	0.91	0.1082	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	MTAP--LINGO2	6	1	MTAP	8659	chr9:21838009:+	LINGO2	26369	chr9:28295364:-	ONLY_REF_SPLICE	YES	122	7	0.05	0.5	0.0649	0.0108	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,LINGO2->chr9:27948076-28670283:-,leucine_rich_repeat_and_Ig_domain_containing_2	EWS502_BONE	0.05	0.5	0.0757	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	HNRNPF--PTPN20A	6	0	HNRNPF	1077	chr10:43904538:-	PTPN20A	28624	chr10:46552531:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0649	0	HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,PTPN20A->chr10:46549955-46641045:-	EWS502_BONE	1	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TYW3--ATP13A5	4	8	TYW3	4564	chr1:75204472:+	ATP13A5	25309	chr3:193061844:-	ONLY_REF_SPLICE	YES	166	0	0.07	1	0.0433	0.0865	TYW3->chr1:75198836-75232362:+,tRNA-yW_synthesizing_protein_3_homolog,ATP13A5->ATPase_13A5,chr3:192992579-193096632:-	EWS502_BONE	0.07	1	0.1298	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	SIPA1L1--RP11-486O13.2	4	5	SIPA1L1	1733	chr14:71787898:+	RP11-486O13.2	52794	chr14:70690468:+	INCL_NON_REF_SPLICE	YES	7	0	0.56	1	0.0433	0.0541	SIPA1L1->chr14:71787166-72207946:+,signal_induced_proliferation_associated_1_like_1,RP11-486O13.2->chr14:70653840-70696904:+	EWS502_BONE	0.56	1	0.0974	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	BTRC--ZMIZ1	4	1	BTRC	1166	chr10:103113985:+	ZMIZ1	33736	chr10:81036938:+	ONLY_REF_SPLICE	YES	17	4	0.23	0.56	0.0433	0.0108	BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+,ZMIZ1->Oncogene{Bushman},chr10:80828792-81076276:+,zinc_finger_MIZ-type_containing_1	EWS502_BONE	0.23	0.56	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	DAB1--SRD5A3-AS1	4	1	DAB1	14147	chr1:57756636:-	SRD5A3-AS1	47006	chr4:56241200:-	ONLY_REF_SPLICE	YES	29	2	0.15	0.71	0.0433	0.0108	DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-,SRD5A3-AS1->SRD5A3_antisense_RNA_1,chr4:56230138-56262014:-	EWS502_BONE	0.15	0.71	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	HNRNPF--PTPN20A	4	1	HNRNPF	2450	chr10:43903165:-	PTPN20A	28624	chr10:46552531:-	ONLY_REF_SPLICE	YES	41	3	0.11	0.62	0.0433	0.0108	HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,PTPN20A->chr10:46549955-46641045:-	EWS502_BONE	0.11	0.62	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TBL1XR1--RP11-2L8.1	3	1	TBL1XR1	1353	chr3:176914909:-	RP11-2L8.1	33601	chr3:177652978:+	ONLY_REF_SPLICE	NO	13	0	0.24	1	0.0325	0.0108	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-2L8.1->chr3:177652611-177655450:+	EWS502_BONE	0.24	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	AL136376.1--RPS28	3	0	AL136376.1	2362	chr1:116915870:-	RPS28	5709	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	EWS502_BONE	1	1	0.0325	TRUE	0	0	0	12	0	TRUE	ACH-000279
EWS502_BONE	AL136376.1--RPS28	3	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	EWS502_BONE	1	1	0.0325	TRUE	0	0	0	12	0	TRUE	ACH-000279
EWS502_BONE	BICD2--DAB2IP	2	3	BICD2	1308	chr9:95526787:-	DAB2IP	36478	chr9:124536539:+	ONLY_REF_SPLICE	YES	80	31	0.06	0.14	0.0216	0.0325	BICD2->BICD_cargo_adaptor_2,chr9:95473645-95527094:-,DAB2IP->DAB2_interacting_protein,Oncogene{Bushman},chr9:124329336-124547809:+	EWS502_BONE	0.06	0.14	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	BICD2--RP11-62C3.6	2	2	BICD2	1308	chr9:95526787:-	RP11-62C3.6	16816	chr9:94971731:+	ONLY_REF_SPLICE	YES	80	0	0.05	1	0.0216	0.0216	BICD2->BICD_cargo_adaptor_2,chr9:95473645-95527094:-,RP11-62C3.6->chr9:94967638-94972440:+	EWS502_BONE	0.05	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ST3GAL3--GUCY1B2	2	2	ST3GAL3	3470	chr1:44202051:+	GUCY1B2	27054	chr13:51640293:-	ONLY_REF_SPLICE	YES	39	0	0.09	1	0.0216	0.0216	ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,GUCY1B2->chr13:51568647-51654998:-,guanylate_cyclase_1,_soluble,_beta_2_(pseudogene)	EWS502_BONE	0.09	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	SIPA1L1--RP11-486O13.2	2	1	SIPA1L1	1733	chr14:71787898:+	RP11-486O13.2	54241	chr14:70694289:+	ONLY_REF_SPLICE	YES	7	8	0.3	0.27	0.0216	0.0108	SIPA1L1->chr14:71787166-72207946:+,signal_induced_proliferation_associated_1_like_1,RP11-486O13.2->chr14:70653840-70696904:+	EWS502_BONE	0.27	0.3	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ABCC1--TMEM204	2	0	ABCC1	1223	chr16:16043656:+	TMEM204	48309	chr16:1604783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,TMEM204->chr16:1578689-1605581:+,transmembrane_protein_204	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ACBD6--RALGPS2	2	0	ACBD6	7351	chr1:180366651:-	RALGPS2	34481	chr1:178863054:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx&tcga_normals:1/3694=0.03%,ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	C17orf76-AS1--FCGRT	2	0	C17orf76-AS1	1593	chr17:16342728:+	FCGRT	21378	chr19:50027764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	C17orf76-AS1->chr17:16342136-16381992:+,FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	3	0	TRUE	ACH-000279
EWS502_BONE	CPSF6--PPP6R3	2	0	CPSF6	11046	chr12:69656342:+	PPP6R3	54565	chr11:68382100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ENY2--HSPA8	2	0	ENY2	5314	chr8:110351619:+	HSPA8	15896	chr11:122932039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ENY2->chr8:110346553-110358182:+,enhancer_of_yellow_2_homolog_(Drosophila),HSPA8->chr11:122928197-122933938:-,heat_shock_protein_family_A_(Hsp70)_member_8	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	GNA14--TTF1	2	0	GNA14	2823	chr9:80143985:-	TTF1	19618	chr9:135267593:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GNA14->G_protein_subunit_alpha_14,chr9:80037995-80263223:-,TTF1->chr9:135251008-135282209:-,transcription_termination_factor,_RNA_polymerase_I	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	GNG11--CCDC88A	2	0	GNG11	1535	chr7:93551545:+	CCDC88A	48988	chr2:55518911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GNG11->G_protein_subunit_gamma_11,chr7:93551011-93557922:+,CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	HNRNPF--PTPN20A	2	0	HNRNPF	1440	chr10:43904175:-	PTPN20A	28624	chr10:46552531:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,PTPN20A->chr10:46549955-46641045:-	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	MED15--RPL27	2	0	MED15	3426	chr22:20862033:+	RPL27	29630	chr17:41150766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	MED15->chr22:20850200-20941919:+,mediator_complex_subunit_15,RPL27->chr17:41150290-41154976:+,ribosomal_protein_L27	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	PPP2CB--HAT1	2	0	PPP2CB	2987	chr8:30669836:-	HAT1	23856	chr2:172821859:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	RLF--GALNT2	2	0	RLF	1264	chr1:40627308:+	GALNT2	35265	chr1:230410191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	SCD5--SEC31A	2	0	SCD5	1552	chr4:83719459:-	SEC31A	48443	chr4:83750211:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_REARRANGEMENT:-:[19804],SCD5->chr4:83550692-83720010:-,stearoyl-CoA_desaturase_5,SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-	EWS502_BONE	1	1	0.0216	TRUE	0	1	0	1	1	TRUE	ACH-000279
EWS502_BONE	TBL1XR1--RP11-91K9.1	2	0	TBL1XR1	1353	chr3:176914909:-	RP11-91K9.1	35414	chr3:177613401:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-91K9.1->chr3:177534653-177617012:+	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	UBE2K--APBB2	2	0	UBE2K	1347	chr4:39700010:+	APBB2	32638	chr4:40895428:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ZNF738--PGBD2	2	0	ZNF738	7035	chr19:21558766:+	PGBD2	17066	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	CTC-228N24.2--CTC-228N24.3	1	3	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	33	1	0.11	0.0108	0.0325	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	EWS502_BONE	0.11	1	0.0433	TRUE	0	1	0	12	1	TRUE	ACH-000279
EWS502_BONE	BTRC--ZMIZ1	1	1	BTRC	2655	chr10:103190209:+	ZMIZ1	33736	chr10:81036938:+	ONLY_REF_SPLICE	YES	30	4	0.06	0.33	0.0108	0.0108	BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+,ZMIZ1->Oncogene{Bushman},chr10:80828792-81076276:+,zinc_finger_MIZ-type_containing_1	EWS502_BONE	0.06	0.33	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	HNRNPF--PTPN20A	1	1	HNRNPF	2450	chr10:43903165:-	PTPN20A	26073	chr10:46568239:-	ONLY_REF_SPLICE	YES	41	0	0.05	1	0.0108	0.0108	HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,PTPN20A->chr10:46549955-46641045:-	EWS502_BONE	0.05	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	PRRG1--LANCL3	1	1	PRRG1	4586	chrX:37285253:+	LANCL3	17056	chrX:37514941:+	ONLY_REF_SPLICE	YES	42	2	0.05	0.5	0.0108	0.0108	PRRG1->chrX:37208528-37316548:+,proline_rich_and_Gla_domain_1,LANCL3->LanC_like_3,chrX:37430822-37543716:+	EWS502_BONE	0.05	0.5	0.0216	TRUE	1	2	0	5	2	TRUE	ACH-000279
EWS502_BONE	SBF2--CDKL5	1	1	SBF2	26328	chr11:9917490:-	CDKL5	67278	chrX:18582597:+	ONLY_REF_SPLICE	YES	11	3	0.15	0.4	0.0108	0.0108	SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,CDKL5->chrX:18443703-18671749:+,cyclin_dependent_kinase_like_5	EWS502_BONE	0.15	0.4	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
BXPC3_PANCREAS	MX1--ABCG1	16	4	MX1	15624	chr21:42812952:+	ABCG1	39490	chr21:43691180:+	ONLY_REF_SPLICE	YES	95	0	0.17	1	0.1686	0.0421	MX1->MX_dynamin_like_GTPase_1,chr21:42792231-42831141:+,ABCG1->ATP_binding_cassette_subfamily_G_member_1,chr21:43619799-43717354:+	BXPC3_PANCREAS	0.17	1	0.2107	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	PPM1H--LINC00393	12	2	PPM1H	6967	chr12:63182006:-	LINC00393	24367	chr13:73987773:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1264	0.0211	PPM1H->chr12:63037762-63328817:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1H,LINC00393->chr13:73987610-74222390:-,long_intergenic_non-protein_coding_RNA_393	BXPC3_PANCREAS	0.93	1	0.1475	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	USP47--MICAL2	7	3	USP47	7470	chr11:11913653:+	MICAL2	52474	chr11:12225797:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0737	0.0316	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2	BXPC3_PANCREAS	0.83	1	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	ALDOA--KRT17	7	0	ALDOA	7476	chr16:30077248:+	KRT17	15303	chr17:39780798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0737	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	BXPC3_PANCREAS	1	1	0.0737	TRUE	0	0	0	10	0	TRUE	ACH-000535
BXPC3_PANCREAS	USP47--MICAL2	4	6	USP47	8567	chr11:11919240:+	MICAL2	51149	chr11:12219034:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0.0632	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2	BXPC3_PANCREAS	1	1	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	MAZ--KRT17	5	0	MAZ	5417	chr16:29821843:+	KRT17	10504	chr17:39780814:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	MAZ->MYC_associated_zinc_finger_protein,chr16:29817427-29823649:+,KRT17->chr17:39775689-39781094:-,keratin_17	BXPC3_PANCREAS	1	1	0.0527	TRUE	0	0	0	2	0	TRUE	ACH-000535
BXPC3_PANCREAS	USP47--MICAL2	2	5	USP47	8567	chr11:11919240:+	MICAL2	52474	chr11:12225797:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0.0527	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2	BXPC3_PANCREAS	1	1	0.0738	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	TP63--CLDN1	3	0	TP63	4502	chr3:189507631:+	CLDN1	28146	chr3:190030825:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_v2:{count=7;pct=0.08%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=1},TP63->chr3:189349205-189615068:+,tumor_protein_p63,CLDN1->chr3:190023490-190040264:-,claudin_1	BXPC3_PANCREAS	1	1	0.0316	TRUE	0	5	1	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	USP47--MICAL2	2	1	USP47	6206	chr11:11906127:+	MICAL2	52474	chr11:12225797:+	ONLY_REF_SPLICE	YES	6	0	0.33	1	0.0211	0.0105	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2	BXPC3_PANCREAS	0.33	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	CAND1--TMTC3	2	0	CAND1	14326	chr12:67701272:+	TMTC3	29570	chr12:88542065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1,TMTC3->chr12:88536073-88593664:+,transmembrane_and_tetratricopeptide_repeat_containing_3	BXPC3_PANCREAS	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	PLEKHM2--DHRS3	2	0	PLEKHM2	1287	chr1:16011113:+	DHRS3	23262	chr1:12640694:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2,DHRS3->Oncogene{Bushman},chr1:12627939-12677737:-,dehydrogenase/reductase_(SDR_family)_member_3	BXPC3_PANCREAS	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	RNF126--BSG	2	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	BXPC3_PANCREAS	1	1	0.0211	TRUE	0	2	0	12	0	TRUE	ACH-000535
BXPC3_PANCREAS	SECISBP2--LMO7	2	0	SECISBP2	2292	chr9:91934712:+	LMO7	55147	chr13:76408362:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SECISBP2->SECIS_binding_protein_2,chr9:91933421-91974557:+,LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+	BXPC3_PANCREAS	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	ZMIZ1-AS1--ARID5B	2	0	ZMIZ1-AS1	3149	chr10:80825504:-	ARID5B	21163	chr10:63759850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ZMIZ1-AS1->ZMIZ1_antisense_RNA_1,chr10:80703085-80827652:-,ARID5B->AT-rich_interaction_domain_5B,chr10:63661059-63856703:+	BXPC3_PANCREAS	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000535
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAT5B--STAT3	834	10	STAT5B	1460	chr17:40428266:-	STAT3	33971	chr17:40483549:-	ONLY_REF_SPLICE	YES	2	244	1	0.78	9.7334	0.1167	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[36617],STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	9.8501	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--RUNX1T1	296	126	RUNX1	28357	chr21:36231771:-	RUNX1T1	55630	chr8:93029591:-	ONLY_REF_SPLICE	YES	242	0	0.64	1	3.4546	1.4705	Mitelman{Heart=2,Skin=11,ALL=2,AML=17},YOSHIHARA_TCGA_num_samples[LAML:7],chimerdb_omim:{acutemyelogenousleukemia},chimerdb_omim:{leukemia},chimerdb_pubmed{acute myeloid leukemia (AML), acute myelogenous leukemia,Promyelocytic leukemia (PML),acute myelocytic leukaemia,Acute myeloid leukaemia, M2 type, with dysplastic features and Auer rods, good prognosis,acute myeloid leukemia,acute myeloid leukemia, chronic myelogenous leukemia,Acute myeloid leukaemia (AML),acute myeloid leukemia with eosinophilia ,de novo cases of acute myeloid leukemia,acute myeloid leukemia(AML),Acute myeloid leukemia,pediatric acute myelogenous leukemia,Acute myelocytic leukemia(AML),AML(acute myeloid leukemia),leukemia,severalleukaemia,acute nonlymphoid leukemia,Primary granulocytic sarcoma (GS),core binding factor [CBF] leukemias,myeloid leukemia,childhood acute myeloid leukemia (AML),Acute myelogenous leukemia,myelodysplastic syndromes (MDS),acute myelocitic leukemia (AML),granulocytic sarcoma,acute myelogenous leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute myeloid leukemia (AML) ,acute myeloid leukaemia(AML),acute promyelocytic leukemia(APL),acute myelogenous leukemia (AML),AML,nonHodgkin's lymphoma (NHL),acute myelogenous leukemia ,Acute leukemia,acute myelogenous leukemia with maturation (AMLM2),acute myeloblastic leukemia,acute myelogenous leukemia(AML), minimal residual diseases (MRD),acute myelogenous leukaemia,acute myeloblastic leukaemia,acute myelogenous leukemia(AML),spinal granulocytic sarcoma,Myelomastocytic leukemia,acute myeloid leukaemia (AML),acute myeloid leukaemia,acute leukemia},{Klijn_CCL:Lymphoid=1},RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	4.9251	TRUE	0	7	0	2	7	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DIS3L--ZWILCH	138	117	DIS3L	12838	chr15:66615923:+	ZWILCH	38321	chr15:66829506:+	ONLY_REF_SPLICE	YES	72	81	0.78	0.76	1.6106	1.3655	DIS3L->DIS3_like_exosome_3'-5'_exoribonuclease,chr15:66585555-66626236:+,ZWILCH->chr15:66797297-66842115:+,zwilch_kinetochore_protein	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.78	2.9761	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--RUNX1T1	22	131	RUNX1	28357	chr21:36231771:-	RUNX1T1	55562	chr8:93029659:-	ONLY_REF_SPLICE	YES	242	1	0.39	0.99	0.2568	1.5289	Mitelman{Heart=2,Skin=11,ALL=2,AML=17},YOSHIHARA_TCGA_num_samples[LAML:7],chimerdb_omim:{acutemyelogenousleukemia},chimerdb_omim:{leukemia},chimerdb_pubmed{acute myeloid leukemia (AML), acute myelogenous leukemia,Promyelocytic leukemia (PML),acute myelocytic leukaemia,Acute myeloid leukaemia, M2 type, with dysplastic features and Auer rods, good prognosis,acute myeloid leukemia,acute myeloid leukemia, chronic myelogenous leukemia,Acute myeloid leukaemia (AML),acute myeloid leukemia with eosinophilia ,de novo cases of acute myeloid leukemia,acute myeloid leukemia(AML),Acute myeloid leukemia,pediatric acute myelogenous leukemia,Acute myelocytic leukemia(AML),AML(acute myeloid leukemia),leukemia,severalleukaemia,acute nonlymphoid leukemia,Primary granulocytic sarcoma (GS),core binding factor [CBF] leukemias,myeloid leukemia,childhood acute myeloid leukemia (AML),Acute myelogenous leukemia,myelodysplastic syndromes (MDS),acute myelocitic leukemia (AML),granulocytic sarcoma,acute myelogenous leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute myeloid leukemia (AML) ,acute myeloid leukaemia(AML),acute promyelocytic leukemia(APL),acute myelogenous leukemia (AML),AML,nonHodgkin's lymphoma (NHL),acute myelogenous leukemia ,Acute leukemia,acute myelogenous leukemia with maturation (AMLM2),acute myeloblastic leukemia,acute myelogenous leukemia(AML), minimal residual diseases (MRD),acute myelogenous leukaemia,acute myeloblastic leukaemia,acute myelogenous leukemia(AML),spinal granulocytic sarcoma,Myelomastocytic leukemia,acute myeloid leukaemia (AML),acute myeloid leukaemia,acute leukemia},{Klijn_CCL:Lymphoid=1},RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.99	1.7857	TRUE	0	7	0	2	7	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--RUNX1T1	1	132	RUNX1	29506	chr21:36228596:-	RUNX1T1	55562	chr8:93029659:-	ONLY_REF_SPLICE	YES	256	1	0.34	0.99	0.0117	1.5405	Mitelman{Heart=2,Skin=11,ALL=2,AML=17},YOSHIHARA_TCGA_num_samples[LAML:7],chimerdb_omim:{acutemyelogenousleukemia},chimerdb_omim:{leukemia},chimerdb_pubmed{acute myeloid leukemia (AML), acute myelogenous leukemia,Promyelocytic leukemia (PML),acute myelocytic leukaemia,Acute myeloid leukaemia, M2 type, with dysplastic features and Auer rods, good prognosis,acute myeloid leukemia,acute myeloid leukemia, chronic myelogenous leukemia,Acute myeloid leukaemia (AML),acute myeloid leukemia with eosinophilia ,de novo cases of acute myeloid leukemia,acute myeloid leukemia(AML),Acute myeloid leukemia,pediatric acute myelogenous leukemia,Acute myelocytic leukemia(AML),AML(acute myeloid leukemia),leukemia,severalleukaemia,acute nonlymphoid leukemia,Primary granulocytic sarcoma (GS),core binding factor [CBF] leukemias,myeloid leukemia,childhood acute myeloid leukemia (AML),Acute myelogenous leukemia,myelodysplastic syndromes (MDS),acute myelocitic leukemia (AML),granulocytic sarcoma,acute myelogenous leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute myeloid leukemia (AML) ,acute myeloid leukaemia(AML),acute promyelocytic leukemia(APL),acute myelogenous leukemia (AML),AML,nonHodgkin's lymphoma (NHL),acute myelogenous leukemia ,Acute leukemia,acute myelogenous leukemia with maturation (AMLM2),acute myeloblastic leukemia,acute myelogenous leukemia(AML), minimal residual diseases (MRD),acute myelogenous leukaemia,acute myeloblastic leukaemia,acute myelogenous leukemia(AML),spinal granulocytic sarcoma,Myelomastocytic leukemia,acute myeloid leukaemia (AML),acute myeloid leukaemia,acute leukemia},{Klijn_CCL:Lymphoid=1},RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.99	1.5522	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--RUNX1T1	1	127	RUNX1	29506	chr21:36228596:-	RUNX1T1	55630	chr8:93029591:-	ONLY_REF_SPLICE	YES	256	0	0.33	1	0.0117	1.4822	Mitelman{Heart=2,Skin=11,ALL=2,AML=17},YOSHIHARA_TCGA_num_samples[LAML:7],chimerdb_omim:{acutemyelogenousleukemia},chimerdb_omim:{leukemia},chimerdb_pubmed{acute myeloid leukemia (AML), acute myelogenous leukemia,Promyelocytic leukemia (PML),acute myelocytic leukaemia,Acute myeloid leukaemia, M2 type, with dysplastic features and Auer rods, good prognosis,acute myeloid leukemia,acute myeloid leukemia, chronic myelogenous leukemia,Acute myeloid leukaemia (AML),acute myeloid leukemia with eosinophilia ,de novo cases of acute myeloid leukemia,acute myeloid leukemia(AML),Acute myeloid leukemia,pediatric acute myelogenous leukemia,Acute myelocytic leukemia(AML),AML(acute myeloid leukemia),leukemia,severalleukaemia,acute nonlymphoid leukemia,Primary granulocytic sarcoma (GS),core binding factor [CBF] leukemias,myeloid leukemia,childhood acute myeloid leukemia (AML),Acute myelogenous leukemia,myelodysplastic syndromes (MDS),acute myelocitic leukemia (AML),granulocytic sarcoma,acute myelogenous leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute myeloid leukemia (AML) ,acute myeloid leukaemia(AML),acute promyelocytic leukemia(APL),acute myelogenous leukemia (AML),AML,nonHodgkin's lymphoma (NHL),acute myelogenous leukemia ,Acute leukemia,acute myelogenous leukemia with maturation (AMLM2),acute myeloblastic leukemia,acute myelogenous leukemia(AML), minimal residual diseases (MRD),acute myelogenous leukaemia,acute myeloblastic leukaemia,acute myelogenous leukemia(AML),spinal granulocytic sarcoma,Myelomastocytic leukemia,acute myeloid leukaemia (AML),acute myeloid leukaemia,acute leukemia},{Klijn_CCL:Lymphoid=1},RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	1.4939	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB3--MPP1	19	24	GAB3	5132	chrX:153940504:-	MPP1	22305	chrX:154020560:-	ONLY_REF_SPLICE	YES	26	318	0.62	0.12	0.2217	0.2801	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[27101],GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.62	0.5018	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DIS3L--ZWILCH	3	71	DIS3L	12187	chr15:66615272:+	ZWILCH	38321	chr15:66829506:+	ONLY_REF_SPLICE	YES	82	81	0.47	0.48	0.035	0.8286	DIS3L->DIS3_like_exosome_3'-5'_exoribonuclease,chr15:66585555-66626236:+,ZWILCH->chr15:66797297-66842115:+,zwilch_kinetochore_protein	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.48	0.8636	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAT5B--STAT3	14	9	STAT5B	1460	chr17:40428266:-	STAT3	35031	chr17:40481794:-	ONLY_REF_SPLICE	YES	2	244	0.92	0.09	0.1634	0.105	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[36617],STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.92	0.2684	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM27--TNK2-AS1	11	18	RBM27	2394	chr5:145598666:+	TNK2-AS1	30668	chr3:195635243:+	INCL_NON_REF_SPLICE	YES	176	9	0.14	0.76	0.1284	0.2101	RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+,TNK2-AS1->TNK2_antisense_RNA_1,chr3:195634947-195638128:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.76	0.3385	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTK2--TRAPPC9	11	10	PTK2	19872	chr8:141828376:-	TRAPPC9	67249	chr8:141461482:-	ONLY_REF_SPLICE	YES	85	21	0.2	0.5	0.1284	0.1167	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.5	0.2451	TRUE	0	1	0	1	1	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB3--MPP1	6	27	GAB3	5132	chrX:153940504:-	MPP1	19888	chrX:154033102:-	ONLY_REF_SPLICE	YES	26	320	0.56	0.09	0.07	0.3151	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[27101],GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.56	0.3851	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WBP2--TAF12	7	23	WBP2	6141	chr17:73845685:-	TAF12	15563	chr1:28948677:-	ONLY_REF_SPLICE	YES	462	5	0.06	0.86	0.0817	0.2684	WBP2->WW_domain_binding_protein_2,chr17:73841780-73852588:-,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.86	0.3501	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAQR5--GLCE	5	24	PAQR5	4834	chr15:69652470:+	GLCE	21384	chr15:69486775:+	ONLY_REF_SPLICE	YES	34	21	0.46	0.58	0.0584	0.2801	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.58	0.3385	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD6--RP11-321F6.1	9	7	SMAD6	6130	chr15:67008836:+	RP11-321F6.1	13233	chr15:66956700:+	ONLY_REF_SPLICE	YES	62	0	0.21	1	0.105	0.0817	LOCAL_REARRANGEMENT:+:[16434],SMAD6->SMAD_family_member_6,chr15:66994566-67074338:+,RP11-321F6.1->chr15:66874528-66978132:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.1867	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSNK2A1--PRKAR2A	9	6	CSNK2A1	18031	chr20:464370:-	PRKAR2A	34390	chr3:48789670:-	INCL_NON_REF_SPLICE	YES	139	69	0.1	0.18	0.105	0.07	CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,PRKAR2A->chr3:48782030-48885279:-,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_alpha	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.18	0.175	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAQR5--GLCE	5	22	PAQR5	4834	chr15:69652470:+	GLCE	22474	chr15:69488754:+	ONLY_REF_SPLICE	YES	34	22	0.44	0.55	0.0584	0.2568	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.55	0.3152	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB3--MPP1	8	5	GAB3	4921	chrX:153940715:-	MPP1	22305	chrX:154020560:-	INCL_NON_REF_SPLICE	YES	40	318	0.25	0.04	0.0934	0.0584	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[27101],GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.25	0.1518	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PITPNM2--SBNO1	9	1	PITPNM2	2351	chr12:123594932:-	SBNO1	41758	chr12:123815922:-	ONLY_REF_SPLICE	YES	7	171	0.59	0.06	0.105	0.0117	PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2,SBNO1->Oncogene{Bushman},chr12:123773656-123849390:-,strawberry_notch_homolog_1_(Drosophila)	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.59	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAQR5--GLCE	5	16	PAQR5	4834	chr15:69652470:+	GLCE	24049	chr15:69502655:+	ONLY_REF_SPLICE	YES	34	16	0.38	0.57	0.0584	0.1867	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.57	0.2451	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAQR5--GLCE	3	14	PAQR5	3663	chr15:69629840:+	GLCE	21384	chr15:69486775:+	ONLY_REF_SPLICE	YES	39	21	0.3	0.45	0.035	0.1634	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.45	0.1984	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GDPD5--XRRA1	4	6	GDPD5	15891	chr11:75167802:-	XRRA1	55194	chr11:74559507:-	ONLY_REF_SPLICE	YES	6	20	0.62	0.33	0.0467	0.07	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.62	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GDPD5--XRRA1	3	8	GDPD5	15891	chr11:75167802:-	XRRA1	53860	chr11:74562248:-	ONLY_REF_SPLICE	YES	6	16	0.65	0.41	0.035	0.0934	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.65	0.1284	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD6--RP11-321F6.1	5	0	SMAD6	6130	chr15:67008836:+	RP11-321F6.1	15438	chr15:66976337:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0584	0	LOCAL_REARRANGEMENT:+:[16434],SMAD6->SMAD_family_member_6,chr15:66994566-67074338:+,RP11-321F6.1->chr15:66874528-66978132:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GDPD5--XRRA1	2	10	GDPD5	15891	chr11:75167802:-	XRRA1	52981	chr11:74563127:-	ONLY_REF_SPLICE	YES	6	13	0.67	0.48	0.0233	0.1167	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.67	0.14	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAQR5--GLCE	2	10	PAQR5	3663	chr15:69629840:+	GLCE	24049	chr15:69502655:+	ONLY_REF_SPLICE	NO	39	16	0.24	0.43	0.0233	0.1167	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.43	0.14	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAQR5--GLCE	1	13	PAQR5	3663	chr15:69629840:+	GLCE	22474	chr15:69488754:+	ONLY_REF_SPLICE	YES	39	22	0.26	0.39	0.0117	0.1517	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.39	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD6--RP11-321F6.1	3	2	SMAD6	6130	chr15:67008836:+	RP11-321F6.1	14324	chr15:66960679:+	ONLY_REF_SPLICE	YES	62	0	0.07	1	0.035	0.0233	LOCAL_REARRANGEMENT:+:[16434],SMAD6->SMAD_family_member_6,chr15:66994566-67074338:+,RP11-321F6.1->chr15:66874528-66978132:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC004791.2--TPM4	3	0	AC004791.2	1089	chr19:15975626:-	TPM4	13759	chr19:16192723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0	AC004791.2->chr19:15962803-15975714:-,TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--EGFL7	3	0	MIR142	1039	chr17:56409831:-	EGFL7	13933	chr9:139565402:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	MIR142->chr17:56408245-56409869:-,microRNA_142,EGFL7->EGF_like_domain_multiple_7,chr9:139553308-139567130:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.035	TRUE	0	0	0	2	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIO--CTD-2353F22.1	3	0	TRIO	1181	chr5:14143991:+	CTD-2353F22.1	78912	chr5:36668813:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,CTD-2353F22.1->chr5:36666316-36725297:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024560.3--BAZ2B	2	0	AC024560.3	7623	chr3:197342435:-	BAZ2B	43421	chr2:160285771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	AC024560.3->chr3:197305084-197354777:-,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DKC1--MPP1	2	0	DKC1	1226	chrX:153991256:+	MPP1	20118	chrX:154020560:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	LOCAL_INVERSION:+:-:[995],DKC1->Oncogene{Bushman},chrX:153991031-154005964:+,dyskerin_pseudouridine_synthase_1,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4G2--THOC5	2	0	EIF4G2	4204	chr11:10827454:-	THOC5	25487	chr22:29932727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2,THOC5->Oncogene{Bushman},THO_complex_5,chr22:29901868-29951205:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NHP2L1--XRCC6	2	0	NHP2L1	2186	chr22:42084798:-	XRCC6	17752	chr22:42042900:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	LOCAL_INVERSION:-:+:[9890],NHP2L1->chr22:42069934-42086508:-,XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	2	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PISD--YWHAH	2	0	PISD	1289	chr22:32058130:-	YWHAH	24267	chr22:32352126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=2;pct=0.02%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Caudate_(basal_ganglia)=1},PISD->chr22:32014477-32058418:-,phosphatidylserine_decarboxylase,YWHAH->chr22:32340447-32353590:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_eta	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSTK--MXI1	2	0	PSTK	1188	chr10:124714084:+	MXI1	20959	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	PSTK->chr10:124713897-124757029:+,phosphoseryl-tRNA_kinase,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUB1--MCCC2	2	0	SUB1	7940	chr5:32591791:+	MCCC2	35215	chr5:70942038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	SUB1->SUB1_homolog,_transcriptional_regulator,chr5:32531739-32604185:+,MCCC2->chr5:70883115-70954531:+,methylcrotonoyl-CoA_carboxylase_2	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBL5--GNL3	2	0	UBL5	1498	chr19:9939065:+	GNL3	11985	chr3:52724961:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	UBL5->chr19:9938568-9940791:+,ubiquitin_like_5,GNL3->G_protein_nucleolar_3,chr3:52715172-52728508:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM189A1--INPPL1	1	1	FAM189A1	4508	chr15:29673979:-	INPPL1	21676	chr11:71935824:+	ONLY_REF_SPLICE	YES	45	1	0.04	0.67	0.0117	0.0117	FAM189A1->chr15:29412457-29862927:-,family_with_sequence_similarity_189_member_A1,INPPL1->Oncogene{Bushman},chr11:71934745-71950149:+,inositol_polyphosphate_phosphatase_like_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.67	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-001656
HS600T_FIBROBLAST	TMPO--PAM	43	12	TMPO	9544	chr12:98931350:+	PAM	31428	chr5:102237060:+	ONLY_REF_SPLICE	YES	53	196	0.51	0.22	0.5377	0.1501	TMPO->chr12:98909290-98944157:+,thymopoietin,PAM->chr5:102089685-102366809:+,peptidylglycine_alpha-amidating_monooxygenase	HS600T_FIBROBLAST	0.22	0.51	0.6878	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	COL1A2--COL6A1	16	0	COL1A2	7216	chr7:94034058:+	COL6A1	54424	chr21:47424586:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2001	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS600T_FIBROBLAST	1	1	0.2001	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	AP3S1--PGGT1B	8	5	AP3S1	8673	chr5:115238689:+	PGGT1B	23281	chr5:114566718:-	ONLY_REF_SPLICE	YES	244	12	0.05	0.52	0.1	0.0625	AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,PGGT1B->chr5:114546527-114598569:-,protein_geranylgeranyltransferase_type_I_subunit_beta	HS600T_FIBROBLAST	0.05	0.52	0.1625	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	PGGT1B--WNT8A	3	1	PGGT1B	1161	chr5:114598409:-	WNT8A	16403	chr5:137420187:+	ONLY_REF_SPLICE	YES	35	0	0.1	1	0.0375	0.0125	PGGT1B->chr5:114546527-114598569:-,protein_geranylgeranyltransferase_type_I_subunit_beta,WNT8A->Wnt_family_member_8A,chr5:137419581-137428054:+	HS600T_FIBROBLAST	0.1	1	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	BGN--TGFBI	3	0	BGN	2855	chrX:152770758:+	TGFBI	19207	chr5:135388611:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	BGN->Oncogene{Bushman},biglycan,chrX:152760397-152775012:+,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS600T_FIBROBLAST	1	1	0.0375	TRUE	0	0	0	2	0	TRUE	ACH-000240
HS600T_FIBROBLAST	CCDC88A--RTN4	2	0	CCDC88A	8066	chr2:55615914:-	RTN4	65009	chr2:55201900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	HS600T_FIBROBLAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	COPZ2--WDFY1	2	0	COPZ2	4435	chr17:46110052:-	WDFY1	18657	chr2:224763787:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	COPZ2->chr17:46103533-46115392:-,coatomer_protein_complex_subunit_zeta_2,WDFY1->WD_repeat_and_FYVE_domain_containing_1,chr2:224720433-224810104:-	HS600T_FIBROBLAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	XG--CHMP1A	2	0	XG	6807	chrX:2712644:+	CHMP1A	22126	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx_v2:{count=7;pct=0.08%;dist=Cells_-_Transformed_fibroblasts=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},XG->Xg_blood_group,chrX:2670091-2734539:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS600T_FIBROBLAST	1	1	0.025	TRUE	1	1	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	PGGT1B--WNT8A	1	1	PGGT1B	1161	chr5:114598409:-	WNT8A	16155	chr5:137419939:+	ONLY_REF_SPLICE	YES	35	0	0.05	1	0.0125	0.0125	PGGT1B->chr5:114546527-114598569:-,protein_geranylgeranyltransferase_type_I_subunit_beta,WNT8A->Wnt_family_member_8A,chr5:137419581-137428054:+	HS600T_FIBROBLAST	0.05	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	PRKD1--CTD-2251F13.1	1	1	PRKD1	1600	chr14:30660505:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0125	0.0125	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	HS600T_FIBROBLAST	0.67	1	0.025	TRUE	0	1	0	5	1	TRUE	ACH-000240
HS600T_FIBROBLAST	PRKD1--CTD-2251F13.1	1	1	PRKD1	2678	chr14:30516916:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0125	0.0125	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	HS600T_FIBROBLAST	0.67	1	0.025	TRUE	0	0	0	2	0	TRUE	ACH-000240
WM115_SKIN	UBE4B--CHRM3-AS2	79	36	UBE4B	32845	chr1:10231387:+	CHRM3-AS2	42832	chr1:239877564:-	ONLY_REF_SPLICE	YES	24	0	0.83	1	0.825	0.376	UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,CHRM3-AS2->CHRM3_antisense_RNA_2,chr1:239866684-239893765:-	WM115_SKIN	0.83	1	1.201	TRUE	0	0	0	2	0	TRUE	ACH-000304
WM115_SKIN	NFKBIL1--PHF1	40	14	NFKBIL1	2570	chr6:31516216:+	PHF1	12750	chr6:33382254:+	ONLY_REF_SPLICE	YES	35	58	0.61	0.48	0.4177	0.1462	NFKBIL1->NFKB_inhibitor_like_1,chr6:31514647-31526606:+,PHF1->PHD_finger_protein_1,chr6:33378176-33384230:+	WM115_SKIN	0.48	0.61	0.5639	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	ABL2--HIVEP3	17	11	ABL2	1444	chr1:179198376:-	HIVEP3	30525	chr1:42384195:-	ONLY_REF_SPLICE	YES	4	24	0.88	0.54	0.1775	0.1149	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	WM115_SKIN	0.54	0.88	0.2924	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	FOXJ3--PIGC	12	9	FOXJ3	11319	chr1:42664773:-	PIGC	28016	chr1:172384514:-	ONLY_REF_SPLICE	YES	19	7	0.53	0.75	0.1253	0.094	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C	WM115_SKIN	0.53	0.75	0.2193	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	STK3--RP11-410L14.2	11	4	STK3	18604	chr8:99718695:-	RP11-410L14.2	40104	chr8:100009194:-	ONLY_REF_SPLICE	YES	30	1	0.33	0.94	0.1149	0.0418	LOCAL_REARRANGEMENT:-:[53936],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,RP11-410L14.2->chr8:100008991-100025272:-	WM115_SKIN	0.33	0.94	0.1567	TRUE	0	1	0	1	1	TRUE	ACH-000304
WM115_SKIN	FOXJ3--PIGC	7	16	FOXJ3	11319	chr1:42664773:-	PIGC	25640	chr1:172411970:-	ONLY_REF_SPLICE	YES	19	27	0.55	0.46	0.0731	0.1671	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C	WM115_SKIN	0.46	0.55	0.2402	TRUE	0	0	0	2	0	TRUE	ACH-000304
WM115_SKIN	RP11-277A4.4--SPATA17	7	5	RP11-277A4.4	1138	chr1:32538938:-	SPATA17	12157	chr1:217856600:+	ONLY_REF_SPLICE	YES	0	2	1	0.86	0.0731	0.0522	RP11-277A4.4->chr1:32517892-32539075:-,SPATA17->chr1:217804666-218045038:+,spermatogenesis_associated_17	WM115_SKIN	0.86	1	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	ABL2--HIVEP3	6	6	ABL2	1444	chr1:179198376:-	HIVEP3	34759	chr1:42314760:-	ONLY_REF_SPLICE	YES	4	57	0.75	0.17	0.0627	0.0627	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	WM115_SKIN	0.17	0.75	0.1254	TRUE	0	0	0	2	0	TRUE	ACH-000304
WM115_SKIN	ST6GALNAC5--FAM102B	5	9	ST6GALNAC5	2302	chr1:77334427:+	FAM102B	15547	chr1:109143188:+	ONLY_REF_SPLICE	YES	16	2	0.47	0.88	0.0522	0.094	ST6GALNAC5->ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_5,chr1:77333126-77531396:+,FAM102B->chr1:109102711-109187522:+,family_with_sequence_similarity_102_member_B	WM115_SKIN	0.47	0.88	0.1462	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	RP5-940J5.9--NAGA	6	0	RP5-940J5.9	1186	chr12:6647351:-	NAGA	7510	chr22:42463207:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	RP5-940J5.9->chr12:6646960-6647536:-,NAGA->N-acetylgalactosaminidase,_alpha-,chr22:42454358-42466846:-	WM115_SKIN	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	FOXJ3--PIGC	3	8	FOXJ3	11319	chr1:42664773:-	PIGC	29097	chr1:172369056:-	ONLY_REF_SPLICE	YES	19	13	0.37	0.46	0.0313	0.0835	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C	WM115_SKIN	0.37	0.46	0.1148	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	FOXJ3--PIGC	1	16	FOXJ3	11319	chr1:42664773:-	PIGC	25617	chr1:172411993:-	ONLY_REF_SPLICE	NO	19	29	0.47	0.37	0.0104	0.1671	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C	WM115_SKIN	0.37	0.47	0.1775	TRUE	0	0	0	2	0	TRUE	ACH-000304
WM115_SKIN	FOXJ3--PIGC	2	7	FOXJ3	11319	chr1:42664773:-	PIGC	31304	chr1:172363550:-	ONLY_REF_SPLICE	YES	19	17	0.32	0.35	0.0209	0.0731	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C	WM115_SKIN	0.32	0.35	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	ABL2--HIVEP3	2	6	ABL2	1444	chr1:179198376:-	HIVEP3	32721	chr1:42331286:-	ONLY_REF_SPLICE	YES	4	60	0.67	0.12	0.0209	0.0627	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	WM115_SKIN	0.12	0.67	0.0836	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	FAXDC2--PTMA	3	0	FAXDC2	1544	chr5:154238269:-	PTMA	24706	chr2:232576624:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	FAXDC2->chr5:154198051-154238812:-,fatty_acid_hydroxylase_domain_containing_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	WM115_SKIN	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	POLR2F--EIF4G2	3	0	POLR2F	12042	chr22:38382319:+	EIF4G2	29807	chr11:10822634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	POLR2F->chr22:38348614-38437922:+,polymerase_(RNA)_II_subunit_F,EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	WM115_SKIN	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	AP2A1--RPA1	2	0	AP2A1	1233	chr19:50270457:+	RPA1	24856	chr17:1756395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+,RPA1->chr17:1732996-1803376:+,replication_protein_A1	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	CORO1C--MKI67	2	0	CORO1C	5404	chr12:109094900:-	MKI67	25894	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	MACF1--HNRNPU	2	0	MACF1	6636	chr1:39571389:+	HNRNPU	127251	chr1:245025836:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,HNRNPU->chr1:245014468-245027844:-,heterogeneous_nuclear_ribonucleoprotein_U_(scaffold_attachment_factor_A)	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	PRPF19--FAM178B	2	0	PRPF19	1225	chr11:60673836:-	FAM178B	29481	chr2:97589320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	PRPF19->chr11:60658202-60674060:-,pre-mRNA_processing_factor_19,FAM178B->chr2:97541620-97684175:-,family_with_sequence_similarity_178_member_B	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	RP11-141M1.3--DPYD	2	0	RP11-141M1.3	1091	chr13:34250815:-	DPYD	24224	chr1:98165858:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	RP11-141M1.3->chr13:33929343-34250905:-,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	UBA3--PSMG2	2	0	UBA3	2786	chr3:69126949:-	PSMG2	24948	chr18:12718516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3,PSMG2->chr18:12658737-12725739:+,proteasome_assembly_chaperone_2	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	UBE2G1--EIF5B	2	0	UBE2G1	6978	chr17:4200012:-	EIF5B	26792	chr2:99995781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,EIF5B->chr2:99953816-100017789:+,eukaryotic_translation_initiation_factor_5B	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	RP11-277A4.4--SPATA17	1	2	RP11-277A4.4	1138	chr1:32538938:-	SPATA17	15502	chr1:217915317:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0104	0.0209	RP11-277A4.4->chr1:32517892-32539075:-,SPATA17->chr1:217804666-218045038:+,spermatogenesis_associated_17	WM115_SKIN	0.75	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	WARS2--ZNF687	1	2	WARS2	1117	chr1:119683178:-	ZNF687	16497	chr1:151258751:+	ONLY_REF_SPLICE	YES	9	6	0.25	0.33	0.0104	0.0209	WARS2->chr1:119573839-119683294:-,tryptophanyl_tRNA_synthetase_2,_mitochondrial,ZNF687->chr1:151254094-151264656:+,zinc_finger_protein_687	WM115_SKIN	0.25	0.33	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	ABL2--HIVEP3	1	1	ABL2	1444	chr1:179198376:-	HIVEP3	37664	chr1:42166666:-	ONLY_REF_SPLICE	YES	4	10	0.33	0.17	0.0104	0.0104	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	WM115_SKIN	0.17	0.33	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	SPATA6--CAMTA1-IT1	1	1	SPATA6	14780	chr1:48850981:-	CAMTA1-IT1	27044	chr1:7430142:+	ONLY_REF_SPLICE	YES	10	0	0.17	1	0.0104	0.0104	SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,CAMTA1-IT1->CAMTA1_intronic_transcript_1,chr1:7429003-7430331:+	WM115_SKIN	0.17	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000304
639V_URINARY_TRACT	PTMA--PTMS	258	4	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	3318	607	0.07	0.3	2.9872	0.0463	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	639V_URINARY_TRACT	0.07	0.3	3.0335	TRUE	0	0	0	16	0	TRUE	ACH-000973
639V_URINARY_TRACT	GAREML--RAB10	85	14	GAREML	2383	chr2:26399353:+	RAB10	16958	chr2:26321531:+	ONLY_REF_SPLICE	YES	5	195	0.95	0.34	0.9841	0.1621	LOCAL_REARRANGEMENT:+:[35637],GAREML->chr2:26395960-26412532:+,RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+	639V_URINARY_TRACT	0.34	0.95	1.1462	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	NRP2--LINC00973	78	27	NRP2	19757	chr2:206617699:+	LINC00973	37271	chr3:98701308:+	ONLY_REF_SPLICE	YES	1	165	0.99	0.39	0.9031	0.3126	NRP2->chr2:206546714-206662857:+,neuropilin_2,LINC00973->chr3:98699902-98701940:+,long_intergenic_non-protein_coding_RNA_973	639V_URINARY_TRACT	0.39	0.99	1.2157	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	HECTD1--ST7L	44	12	HECTD1	38475	chr14:31576773:-	ST7L	65609	chr1:113093315:-	ONLY_REF_SPLICE	YES	118	7	0.32	0.89	0.5094	0.1389	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,ST7L->chr1:113066140-113163447:-,suppression_of_tumorigenicity_7_like	639V_URINARY_TRACT	0.32	0.89	0.6483	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	HECTD1--ST7L	21	8	HECTD1	38475	chr14:31576773:-	ST7L	66702	chr1:113084712:-	ONLY_REF_SPLICE	YES	118	12	0.2	0.71	0.2431	0.0926	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,ST7L->chr1:113066140-113163447:-,suppression_of_tumorigenicity_7_like	639V_URINARY_TRACT	0.2	0.71	0.3357	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	DDX6--FOXR1	20	9	DDX6	8487	chr11:118650341:-	FOXR1	26488	chr11:118849492:+	ONLY_REF_SPLICE	YES	150	5	0.16	0.85	0.2316	0.1042	DDX6->DEAD-box_helicase_6,Oncogene{Bushman},chr11:118620034-118661858:-,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	639V_URINARY_TRACT	0.16	0.85	0.3358	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	NRP2--LINC00973	3	30	NRP2	19757	chr2:206617699:+	LINC00973	36138	chr3:98700098:+	INCL_NON_REF_SPLICE	YES	1	171	0.97	0.16	0.0347	0.3473	NRP2->chr2:206546714-206662857:+,neuropilin_2,LINC00973->chr3:98699902-98701940:+,long_intergenic_non-protein_coding_RNA_973	639V_URINARY_TRACT	0.16	0.97	0.382	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	ZNF540--SIPA1L3	8	3	ZNF540	1260	chr19:38042567:+	SIPA1L3	34912	chr19:38643480:+	ONLY_REF_SPLICE	YES	0	8	1	0.58	0.0926	0.0347	ZNF540->chr19:38042308-38104998:+,zinc_finger_protein_540,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	639V_URINARY_TRACT	0.58	1	0.1273	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	PFN1--RP11-742N3.1	6	0	PFN1	1583	chr17:4851774:-	RP11-742N3.1	7418	chr11:82400578:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0695	0	PFN1->Oncogene{Bushman},chr17:4848947-4852356:-,profilin_1,RP11-742N3.1->chr11:82400571-82400944:+	639V_URINARY_TRACT	1	1	0.0695	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	PTMA--PTMS	3	0	PTMA	6593	chr2:232577226:+	PTMS	14193	chr12:6879558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	639V_URINARY_TRACT	1	1	0.0347	TRUE	0	0	0	16	0	TRUE	ACH-000973
639V_URINARY_TRACT	PTMA--PTMS	3	0	PTMA	6014	chr2:232576647:+	PTMS	13776	chr12:6879141:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	639V_URINARY_TRACT	1	1	0.0347	TRUE	0	0	0	16	0	TRUE	ACH-000973
639V_URINARY_TRACT	CTC-432M15.3--AC034228.7	2	1	CTC-432M15.3	1154	chr5:131132523:-	AC034228.7	50074	chr5:131154556:-	ONLY_REF_SPLICE	YES	14	0	0.18	1	0.0232	0.0116	LOCAL_REARRANGEMENT:-:[10140],CTC-432M15.3->chr5:130761584-131132676:-,AC034228.7->chr5:131142816-131281391:-	639V_URINARY_TRACT	0.18	1	0.0348	TRUE	0	0	0	2	0	TRUE	ACH-000973
639V_URINARY_TRACT	LINC00958--PSMA1	2	0	LINC00958	1093	chr11:13011003:-	PSMA1	17371	chr11:14539527:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LINC00958->chr11:12984057-13011095:-,long_intergenic_non-protein_coding_RNA_958,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	639V_URINARY_TRACT	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	ODC1--RTFDC1	2	0	ODC1	3365	chr2:10585057:-	RTFDC1	15151	chr20:55048357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	ODC1->chr2:10580094-10588630:-,ornithine_decarboxylase_1,RTFDC1->chr20:55043647-55093943:+,replication_termination_factor_2_domain_containing_1	639V_URINARY_TRACT	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	RPL15--MKI67	2	0	RPL15	1695	chr3:23958730:+	MKI67	14248	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	639V_URINARY_TRACT	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	SLC35E3--LARS	2	0	SLC35E3	3944	chr12:69145970:+	LARS	30873	chr5:145524272:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	SLC35E3->chr12:69139886-69187508:+,solute_carrier_family_35_member_E3,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	639V_URINARY_TRACT	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000973
SNU245_BILIARY_TRACT	PLK1S1--RP5-1177M21.1	48	13	PLK1S1	7067	chr20:21143800:+	RP5-1177M21.1	21365	chr20:20951142:+	INCL_NON_REF_SPLICE	YES	60	0	0.5	1	0.4852	0.1314	PLK1S1->Oncogene{Bushman},chr20:21106624-21227260:+,RP5-1177M21.1->chr20:20951089-20953203:+	SNU245_BILIARY_TRACT	0.5	1	0.6166	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	PLEKHA5--SOX5	36	8	PLEKHA5	3233	chr12:19285384:+	SOX5	65438	chr12:23818498:-	ONLY_REF_SPLICE	YES	279	0	0.14	1	0.3639	0.0809	PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU245_BILIARY_TRACT	0.14	1	0.4448	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	PLEKHA5--SOX5	26	8	PLEKHA5	3233	chr12:19285384:+	SOX5	65435	chr12:23818501:-	ONLY_REF_SPLICE	YES	279	0	0.11	1	0.2628	0.0809	PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU245_BILIARY_TRACT	0.11	1	0.3437	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	ST7--MET	14	3	ST7	1454	chr7:116593745:+	MET	40600	chr7:116339125:+	ONLY_REF_SPLICE	YES	47	115	0.27	0.13	0.1415	0.0303	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1],ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	SNU245_BILIARY_TRACT	0.13	0.27	0.1718	TRUE	0	2	0	2	2	TRUE	ACH-000268
SNU245_BILIARY_TRACT	CAPN8--RP11-504P24.5	10	3	CAPN8	4855	chr1:223816364:-	RP11-504P24.5	26686	chr1:224222758:-	ONLY_REF_SPLICE	YES	102	0	0.11	1	0.1011	0.0303	CAPN8->calpain_8,chr1:223711349-223853436:-,RP11-504P24.5->chr1:224218406-224222758:-	SNU245_BILIARY_TRACT	0.11	1	0.1314	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	CAPN8--RP11-504P24.5	8	2	CAPN8	2395	chr1:223842032:-	RP11-504P24.5	26686	chr1:224222758:-	ONLY_REF_SPLICE	YES	150	0	0.06	1	0.0809	0.0202	CAPN8->calpain_8,chr1:223711349-223853436:-,RP11-504P24.5->chr1:224218406-224222758:-	SNU245_BILIARY_TRACT	0.06	1	0.1011	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	CHMP4C--RP11-257P3.3	7	4	CHMP4C	3676	chr8:82667719:+	RP11-257P3.3	10251	chr8:82438078:+	ONLY_REF_SPLICE	YES	137	1	0.07	0.92	0.0708	0.0404	CHMP4C->charged_multivesicular_body_protein_4C,chr8:82644669-82671750:+,RP11-257P3.3->chr8:82433853-82445510:+	SNU245_BILIARY_TRACT	0.07	0.92	0.1112	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	PLK1S1--RP5-1177M21.1	5	6	PLK1S1	7067	chr20:21143800:+	RP5-1177M21.1	22413	chr20:20952793:+	ONLY_REF_SPLICE	YES	60	0	0.15	1	0.0505	0.0606	PLK1S1->Oncogene{Bushman},chr20:21106624-21227260:+,RP5-1177M21.1->chr20:20951089-20953203:+	SNU245_BILIARY_TRACT	0.15	1	0.1111	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	CHMP4C--RP11-257P3.3	5	4	CHMP4C	3676	chr8:82667719:+	RP11-257P3.3	9140	chr8:82433942:+	INCL_NON_REF_SPLICE	YES	137	0	0.06	1	0.0505	0.0404	CHMP4C->charged_multivesicular_body_protein_4C,chr8:82644669-82671750:+,RP11-257P3.3->chr8:82433853-82445510:+	SNU245_BILIARY_TRACT	0.06	1	0.0909	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	CAPN8--RP11-504P24.5	4	4	CAPN8	5508	chr1:223815711:-	RP11-504P24.5	26686	chr1:224222758:-	ONLY_REF_SPLICE	YES	96	0	0.08	1	0.0404	0.0404	CAPN8->calpain_8,chr1:223711349-223853436:-,RP11-504P24.5->chr1:224218406-224222758:-	SNU245_BILIARY_TRACT	0.08	1	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	KRAS--LRMP	5	0	KRAS	1186	chr12:25403685:-	LRMP	33131	chr12:25222284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0505	0	LOCAL_INVERSION:-:+:[96455],KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SNU245_BILIARY_TRACT	1	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	RP1-178F15.5--RPLP1	3	1	RP1-178F15.5	1244	chr1:153606573:-	RPLP1	9579	chr15:69745182:+	INCL_NON_REF_SPLICE	YES	29	0	0.12	1	0.0303	0.0101	RP1-178F15.5->chr1:153598808-153606816:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	SNU245_BILIARY_TRACT	0.12	1	0.0404	TRUE	0	0	0	2	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	AC073283.4--KCNK12	2	1	AC073283.4	2928	chr2:47559412:-	KCNK12	17700	chr2:47748947:-	ONLY_REF_SPLICE	NO	2	0	0.6	1	0.0202	0.0101	AC073283.4->chr2:47419544-47572213:-,KCNK12->chr2:47743720-47798078:-,potassium_two_pore_domain_channel_subfamily_K_member_12	SNU245_BILIARY_TRACT	0.6	1	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	FHDC1--ARFIP1	2	1	FHDC1	2686	chr4:153864707:+	ARFIP1	23532	chr4:153750777:+	ONLY_REF_SPLICE	YES	1	65	0.75	0.04	0.0202	0.0101	LOCAL_REARRANGEMENT:+:[17889],FHDC1->FH2_domain_containing_1,chr4:153857504-153900848:+,ARFIP1->ADP_ribosylation_factor_interacting_protein_1,chr4:153701089-153839615:+	SNU245_BILIARY_TRACT	0.04	0.75	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	ARHGEF18--GPHN	2	0	ARHGEF18	1135	chr19:7460133:+	GPHN	44467	chr14:67525366:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	ARHGEF18->Rho/Rac_guanine_nucleotide_exchange_factor_18,chr19:7459999-7537363:+,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	CASC4--GCOM1	2	0	CASC4	1628	chr15:44581554:+	GCOM1	26480	chr15:57896467:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,GCOM1->GRINL1A_complex_locus_1,chr15:57884106-58006943:+	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	HSPD1--NUCKS1	2	0	HSPD1	5097	chr2:198361864:-	NUCKS1	18766	chr1:205696933:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1,NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	KRAS--LRMP	2	0	KRAS	2308	chr12:25398208:-	LRMP	42567	chr12:25254112:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_INVERSION:-:+:[96455],KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	NBR2--ALDH3A2	2	0	NBR2	1161	chr17:41277787:+	ALDH3A2	18743	chr17:19559679:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	NBR2->chr17:41277627-41305688:+,neighbor_of_BRCA1_gene_2_(non-protein_coding),ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	2	0	4	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	NEK7--CD46	2	0	NEK7	1314	chr1:198126406:+	CD46	24623	chr1:207930359:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	NEK7->NIMA_related_kinase_7,chr1:198126093-198291550:+,CD46->CD46_molecule,Oncogene{Bushman},chr1:207925402-207968858:+	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	PCMTD1--FDFT1	2	0	PCMTD1	1246	chr8:52811490:-	FDFT1	25192	chr8:11666303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	RBM6--RHOA	2	0	RBM6	3185	chr3:50000118:+	RHOA	37115	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Pituitary=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	4	1	6	1	TRUE	ACH-000268
SNU245_BILIARY_TRACT	RNF126--BSG	2	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	2	0	12	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	AC073283.4--KCNK12	1	1	AC073283.4	4896	chr2:47550560:-	KCNK12	17700	chr2:47748947:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0101	0.0101	AC073283.4->chr2:47419544-47572213:-,KCNK12->chr2:47743720-47798078:-,potassium_two_pore_domain_channel_subfamily_K_member_12	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
TE159T_FIBROBLAST	RSBN1L--PTPN12	22	9	RSBN1L	1613	chr7:77326372:+	PTPN12	39555	chr7:77265099:+	ONLY_REF_SPLICE	YES	7	129	0.82	0.19	0.1664	0.0681	LOCAL_REARRANGEMENT:+:[56372],RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like,PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12	TE159T_FIBROBLAST	0.19	0.82	0.2345	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	COL6A1--GSTT1	3	0	COL6A1	16056	chr21:47421243:+	GSTT1	29599	chr22:24376497:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,GSTT1->Oncogene{Bushman},chr22:24376133-24384680:-,glutathione_S-transferase_theta_1	TE159T_FIBROBLAST	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	RNF149--CYB5D2	3	0	RNF149	7711	chr2:101898321:-	CYB5D2	18133	chr17:4053185:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RNF149->chr2:101887681-101925163:-,ring_finger_protein_149,CYB5D2->chr17:4046462-4090605:+,cytochrome_b5_domain_containing_2	TE159T_FIBROBLAST	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	TRPS1--DHX15	3	0	TRPS1	21935	chr8:116423454:-	DHX15	48353	chr4:24529339:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0	TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,DHX15->DEAH-box_helicase_15,chr4:24519064-24586173:-	TE159T_FIBROBLAST	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	ALCAM--IST1	2	0	ALCAM	1573	chr3:105086325:+	IST1	42680	chr16:71957191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	ALCAM->activated_leukocyte_cell_adhesion_molecule,chr3:105085753-105295744:+,IST1->IST1,_ESCRT-III_associated_factor,chr16:71879899-71962913:+	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	AP000487.5--SFXN5	2	0	AP000487.5	1391	chr11:70244204:-	SFXN5	13954	chr2:73285725:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	AP000487.5->chr11:70218352-70244594:-,SFXN5->chr2:73169165-73302747:-,sideroflexin_5	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	CYR61--ALKBH7	2	0	CYR61	2524	chr1:86047967:+	ALKBH7	9235	chr19:6374476:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61,ALKBH7->alkB_homolog_7,chr19:6372444-6375042:+	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	DCAF13--SKIV2L2	2	0	DCAF13	1803	chr8:104427744:+	SKIV2L2	39097	chr5:54683802:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	DCAF13->DDB1_and_CUL4_associated_factor_13,chr8:104426942-104455681:+,SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	FBN1--PITPNC1	2	0	FBN1	2244	chr15:48936803:-	PITPNC1	84478	chr17:65628259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	FBN1->chr15:48700503-48938046:-,fibrillin_1,PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	GLG1--AP1G1	2	0	GLG1	16292	chr16:74508444:-	AP1G1	39287	chr16:71823385:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	KDM6A--LINC00222	2	0	KDM6A	1477	chrX:44733233:+	LINC00222	36108	chr6:109080621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,LINC00222->chr6:109072857-109091145:+,long_intergenic_non-protein_coding_RNA_222	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	KLHL8--NUDT9	2	0	KLHL8	3030	chr4:88141570:-	NUDT9	21984	chr4:88356133:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},KLHL8->chr4:88081255-88161466:-,kelch_like_family_member_8,NUDT9->chr4:88343734-88380606:+,nudix_hydrolase_9	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	PDIA6--SERPINE2	2	0	PDIA6	18507	chr2:10927407:-	SERPINE2	35638	chr2:224847498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	PDIA6->chr2:10923517-10978103:-,protein_disulfide_isomerase_family_A_member_6,SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	RBPJ--C6orf203	2	0	RBPJ	9966	chr4:26364250:+	C6orf203	37694	chr6:107372261:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	RBPJ->chr4:26165077-26436541:+,recombination_signal_binding_protein_for_immunoglobulin_kappa_J_region,C6orf203->chr6:107349407-107372546:+,chromosome_6_open_reading_frame_203	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	RP11-435B5.4--PDE4DIP	2	0	RP11-435B5.4	2843	chr1:143465380:-	PDE4DIP	42532	chr1:144923821:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	RP11-435B5.4->chr1:143354963-143467632:-,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	RQCD1--MYO1B	2	0	RQCD1	1399	chr2:219433701:+	MYO1B	27469	chr2:192225357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	RQCD1->chr2:219433303-219461803:+,MYO1B->chr2:192109911-192290115:+,myosin_IB	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	SNX6--KPNA3	2	0	SNX6	12510	chr14:35044962:-	KPNA3	21570	chr13:50321129:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	SNX6->chr14:35030300-35099389:-,sorting_nexin_6,KPNA3->chr13:50273447-50367057:-,karyopherin_subunit_alpha_3	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	SUPT5H--TGFBI	2	0	SUPT5H	8559	chr19:39949889:+	TGFBI	42689	chr5:135398875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	SUPT5H->SPT5_homolog,_DSIF_elongation_factor_subunit,chr19:39926796-39967310:+,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	THRAP3--MYL12B	2	0	THRAP3	1090	chr1:36690106:+	MYL12B	22323	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	TPM1--CIRBP	2	0	TPM1	2200	chr15:63336030:+	CIRBP	29266	chr19:1270927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha),CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	ZNF45--MSANTD2	2	0	ZNF45	6438	chr19:44429477:-	MSANTD2	20312	chr11:124644714:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	ZNF45->chr19:44416781-44439430:-,zinc_finger_protein_45,MSANTD2->Myb/SANT_DNA_binding_domain_containing_2,chr11:124636394-124670569:-	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	ZNF846--NPLOC4	2	0	ZNF846	5260	chr19:9878965:-	NPLOC4	35357	chr17:79539114:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	ZNF846->chr19:9862669-9903856:-,zinc_finger_protein_846,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
LN215_CENTRAL_NERVOUS_SYSTEM	TIPARP--HTR3D	56	193	TIPARP	2562	chr3:156392585:+	HTR3D	19573	chr3:183752845:+	ONLY_REF_SPLICE	YES	16	0	0.94	1	0.6576	2.2665	TIPARP->TCDD_inducible_poly(ADP-ribose)_polymerase,chr3:156391024-156424559:+,HTR3D->5-hydroxytryptamine_receptor_3D,chr3:183749332-183757157:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.94	1	2.9241	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DRG1--ZNF72P	77	22	DRG1	5637	chr22:31816411:+	ZNF72P	16808	chr22:16635539:+	INCL_NON_REF_SPLICE	YES	125	0	0.44	1	0.9043	0.2584	DRG1->chr22:31795509-31924726:+,developmentally_regulated_GTP_binding_protein_1,ZNF72P->chr22:16634898-16651926:+,zinc_finger_protein_72,_pseudogene	LN215_CENTRAL_NERVOUS_SYSTEM	0.44	1	1.1627	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	IQGAP1--ZNF774	68	50	IQGAP1	2279	chr15:90934105:+	ZNF774	45234	chr15:90897874:+	ONLY_REF_SPLICE	YES	431	5	0.21	0.96	0.7986	0.5872	LOCAL_REARRANGEMENT:+:[22126],IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,ZNF774->chr15:90895477-90909324:+,zinc_finger_protein_774	LN215_CENTRAL_NERVOUS_SYSTEM	0.21	0.96	1.3858	TRUE	0	4	0	2	4	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ZNRF3--AIFM3	59	16	ZNRF3	3718	chr22:29383189:+	AIFM3	22070	chr22:21322093:+	ONLY_REF_SPLICE	YES	3	2	0.96	0.97	0.6929	0.1879	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,AIFM3->apoptosis_inducing_factor,_mitochondria_associated_3,chr22:21319396-21335649:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.96	0.97	0.8808	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CTD-2544L4.1--TBC1D7	58	2	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5189	chr6:13328738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6811	0.0235	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.7046	TRUE	0	0	0	5	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MYH9--BRD1	39	76	MYH9	1212	chr22:36783852:-	BRD1	47179	chr22:50217979:-	ONLY_REF_SPLICE	YES	433	3	0.21	0.97	0.458	0.8925	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,BRD1->bromodomain_containing_1,chr22:50166931-50221160:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.21	0.97	1.3505	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	TIPARP--HTR3D	1	196	TIPARP	3544	chr3:156393567:+	HTR3D	19573	chr3:183752845:+	ONLY_REF_SPLICE	YES	16	0	0.92	1	0.0117	2.3017	TIPARP->TCDD_inducible_poly(ADP-ribose)_polymerase,chr3:156391024-156424559:+,HTR3D->5-hydroxytryptamine_receptor_3D,chr3:183749332-183757157:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.92	1	2.3134	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CHEK2--PRR14L	38	17	CHEK2	4758	chr22:29130391:-	PRR14L	41521	chr22:32081789:-	ONLY_REF_SPLICE	YES	36	8	0.6	0.87	0.4463	0.1996	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,PRR14L->chr22:32072242-32146126:-,proline_rich_14_like	LN215_CENTRAL_NERVOUS_SYSTEM	0.6	0.87	0.6459	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CTD-2544L4.1--TBC1D7	37	2	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5183	chr6:13328744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4345	0.0235	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.458	TRUE	0	0	0	5	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	TIPARP--HTR3D	16	63	TIPARP	2562	chr3:156392585:+	HTR3D	22413	chr3:183755809:+	ONLY_REF_SPLICE	YES	16	86	0.83	0.48	0.1879	0.7398	TIPARP->TCDD_inducible_poly(ADP-ribose)_polymerase,chr3:156391024-156424559:+,HTR3D->5-hydroxytryptamine_receptor_3D,chr3:183749332-183757157:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.48	0.83	0.9277	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DGCR2--LINC00634	27	17	DGCR2	2450	chr22:19076881:-	LINC00634	20544	chr22:42353676:+	ONLY_REF_SPLICE	YES	46	1	0.49	0.98	0.3171	0.1996	DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-,LINC00634->chr22:42348169-42354937:+,long_intergenic_non-protein_coding_RNA_634	LN215_CENTRAL_NERVOUS_SYSTEM	0.49	0.98	0.5167	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CTD-2544L4.1--TBC1D7	30	2	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5177	chr6:13328750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3523	0.0235	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.3758	TRUE	0	0	0	5	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ACO2--RP1-288L1.4	30	0	ACO2	1058	chr22:41865186:+	RP1-288L1.4	22838	chr22:35109964:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3523	0	ACO2->aconitase_2,chr22:41865129-41924993:+,RP1-288L1.4->chr22:35107899-35120910:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.3523	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	TOM1--TANGO2	22	32	TOM1	7385	chr22:35719907:+	TANGO2	25387	chr22:20024283:+	ONLY_REF_SPLICE	YES	37	17	0.59	0.76	0.2584	0.3758	TOM1->chr22:35695268-35743985:+,target_of_myb1_membrane_trafficking_protein,TANGO2->chr22:20004537-20053449:+,transport_and_golgi_organization_2_homolog	LN215_CENTRAL_NERVOUS_SYSTEM	0.59	0.76	0.6342	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	POLDIP3--CRYBB2P1	24	17	POLDIP3	3081	chr22:42998776:-	CRYBB2P1	29125	chr22:25916649:+	ONLY_REF_SPLICE	YES	81	7	0.34	0.85	0.2818	0.1996	POLDIP3->chr22:42979727-43010968:-,polymerase_(DNA)_delta_interacting_protein_3,CRYBB2P1->chr22:25844072-25916821:+,crystallin_beta_B2_pseudogene_1	LN215_CENTRAL_NERVOUS_SYSTEM	0.34	0.85	0.4814	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CELSR1--FAM230B	22	19	CELSR1	35402	chr22:46765056:-	FAM230B	55770	chr22:21538389:+	INCL_NON_REF_SPLICE	YES	28	1	0.59	0.98	0.2584	0.2231	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,FAM230B->chr22:21522047-21546445:+,family_with_sequence_similarity_230_member_B_(non-protein_coding)	LN215_CENTRAL_NERVOUS_SYSTEM	0.59	0.98	0.4815	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ZNRF3--AIFM3	23	10	ZNRF3	3718	chr22:29383189:+	AIFM3	23259	chr22:21327596:+	ONLY_REF_SPLICE	YES	3	17	0.92	0.66	0.2701	0.1174	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,AIFM3->apoptosis_inducing_factor,_mitochondria_associated_3,chr22:21319396-21335649:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.66	0.92	0.3875	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	SMDT1--SMC1B	13	36	SMDT1	1264	chr22:42475958:+	SMC1B	24638	chr22:45757864:-	ONLY_REF_SPLICE	YES	114	3	0.3	0.94	0.1527	0.4228	SMDT1->chr22:42475695-42480288:+,single-pass_membrane_protein_with_aspartate-rich_tail_1,SMC1B->chr22:45739944-45809500:-,structural_maintenance_of_chromosomes_1B	LN215_CENTRAL_NERVOUS_SYSTEM	0.3	0.94	0.5755	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ACO2--RP1-288L1.4	21	0	ACO2	1058	chr22:41865186:+	RP1-288L1.4	21770	chr22:35120914:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2466	0	ACO2->aconitase_2,chr22:41865129-41924993:+,RP1-288L1.4->chr22:35107899-35120910:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.2466	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	IQGAP1--ZNF774	14	24	IQGAP1	2279	chr15:90934105:+	ZNF774	47009	chr15:90902083:+	ONLY_REF_SPLICE	YES	431	15	0.08	0.72	0.1644	0.2818	LOCAL_REARRANGEMENT:+:[22126],IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,ZNF774->chr15:90895477-90909324:+,zinc_finger_protein_774	LN215_CENTRAL_NERVOUS_SYSTEM	0.08	0.72	0.4462	TRUE	0	2	0	2	2	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	POLDIP3--CRYBB2P1	12	32	POLDIP3	3081	chr22:42998776:-	CRYBB2P1	23032	chr22:25905150:+	ONLY_REF_SPLICE	YES	81	1	0.35	0.98	0.1409	0.3758	POLDIP3->chr22:42979727-43010968:-,polymerase_(DNA)_delta_interacting_protein_3,CRYBB2P1->chr22:25844072-25916821:+,crystallin_beta_B2_pseudogene_1	LN215_CENTRAL_NERVOUS_SYSTEM	0.35	0.98	0.5167	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	TIPARP--HTR3D	1	76	TIPARP	2562	chr3:156392585:+	HTR3D	20885	chr3:183754157:+	ONLY_REF_SPLICE	NO	16	74	0.83	0.51	0.0117	0.8925	TIPARP->TCDD_inducible_poly(ADP-ribose)_polymerase,chr3:156391024-156424559:+,HTR3D->5-hydroxytryptamine_receptor_3D,chr3:183749332-183757157:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.51	0.83	0.9042	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ZNRF3--AIFM3	11	16	ZNRF3	3718	chr22:29383189:+	AIFM3	20771	chr22:21320794:+	ONLY_REF_SPLICE	YES	3	0	0.9	1	0.1292	0.1879	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,AIFM3->apoptosis_inducing_factor,_mitochondria_associated_3,chr22:21319396-21335649:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.3171	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	LZTR1--MB	11	14	LZTR1	14744	chr22:21350462:+	MB	28065	chr22:36013312:-	INCL_NON_REF_SPLICE	YES	125	6	0.17	0.81	0.1292	0.1644	LZTR1->ArcherDX_panel,FoundationOne_panel,chr22:21333751-21353327:+,leucine-zipper-like_transcription_regulator_1,MB->chr22:36002811-36033998:-,myoglobin	LN215_CENTRAL_NERVOUS_SYSTEM	0.17	0.81	0.2936	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DRG1--ZNF72P	11	13	DRG1	5637	chr22:31816411:+	ZNF72P	16829	chr22:16635560:+	INCL_NON_REF_SPLICE	YES	125	0	0.16	1	0.1292	0.1527	DRG1->chr22:31795509-31924726:+,developmentally_regulated_GTP_binding_protein_1,ZNF72P->chr22:16634898-16651926:+,zinc_finger_protein_72,_pseudogene	LN215_CENTRAL_NERVOUS_SYSTEM	0.16	1	0.2819	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	FBLN1--RP11-782C8.2	12	6	FBLN1	19117	chr22:45946495:+	RP11-782C8.2	48974	chr1:143121165:-	ONLY_REF_SPLICE	YES	200	0	0.08	1	0.1409	0.0705	FBLN1->Oncogene{Bushman},chr22:45898118-45997015:+,fibulin_1,RP11-782C8.2->chr1:143118704-143211070:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	SMDT1--SMC1B	2	39	SMDT1	2405	chr22:42478069:+	SMC1B	24638	chr22:45757864:-	ONLY_REF_SPLICE	NO	69	3	0.37	0.93	0.0235	0.458	SMDT1->chr22:42475695-42480288:+,single-pass_membrane_protein_with_aspartate-rich_tail_1,SMC1B->chr22:45739944-45809500:-,structural_maintenance_of_chromosomes_1B	LN215_CENTRAL_NERVOUS_SYSTEM	0.37	0.93	0.4815	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	SMDT1--SMC1B	1	41	SMDT1	2405	chr22:42478069:+	SMC1B	23596	chr22:45758906:-	ONLY_REF_SPLICE	YES	69	0	0.38	1	0.0117	0.4815	SMDT1->chr22:42475695-42480288:+,single-pass_membrane_protein_with_aspartate-rich_tail_1,SMC1B->chr22:45739944-45809500:-,structural_maintenance_of_chromosomes_1B	LN215_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.4932	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DGCR2--LINC00634	6	17	DGCR2	2450	chr22:19076881:-	LINC00634	19405	chr22:42348289:+	INCL_NON_REF_SPLICE	YES	46	0	0.33	1	0.0705	0.1996	DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-,LINC00634->chr22:42348169-42354937:+,long_intergenic_non-protein_coding_RNA_634	LN215_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.2701	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CELSR1--FAM230B	5	19	CELSR1	35402	chr22:46765056:-	FAM230B	55365	chr22:21537984:+	INCL_NON_REF_SPLICE	YES	28	2	0.46	0.92	0.0587	0.2231	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,FAM230B->chr22:21522047-21546445:+,family_with_sequence_similarity_230_member_B_(non-protein_coding)	LN215_CENTRAL_NERVOUS_SYSTEM	0.46	0.92	0.2818	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DRG1--ZNF72P	9	0	DRG1	5637	chr22:31816411:+	ZNF72P	17876	chr22:16650210:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1057	0	DRG1->chr22:31795509-31924726:+,developmentally_regulated_GTP_binding_protein_1,ZNF72P->chr22:16634898-16651926:+,zinc_finger_protein_72,_pseudogene	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.1057	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	SMDT1--SMC1B	3	23	SMDT1	1215	chr22:42475909:+	SMC1B	24638	chr22:45757864:-	ONLY_REF_SPLICE	YES	100	3	0.21	0.9	0.0352	0.2701	SMDT1->chr22:42475695-42480288:+,single-pass_membrane_protein_with_aspartate-rich_tail_1,SMC1B->chr22:45739944-45809500:-,structural_maintenance_of_chromosomes_1B	LN215_CENTRAL_NERVOUS_SYSTEM	0.21	0.9	0.3053	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ACO2--RP1-288L1.4	8	0	ACO2	1058	chr22:41865186:+	RP1-288L1.4	23914	chr22:35108888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0939	0	ACO2->aconitase_2,chr22:41865129-41924993:+,RP1-288L1.4->chr22:35107899-35120910:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CELSR1--FAM230B	7	3	CELSR1	35402	chr22:46765056:-	FAM230B	55986	chr22:21538605:+	INCL_NON_REF_SPLICE	YES	28	9	0.26	0.53	0.0822	0.0352	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,FAM230B->chr22:21522047-21546445:+,family_with_sequence_similarity_230_member_B_(non-protein_coding)	LN215_CENTRAL_NERVOUS_SYSTEM	0.26	0.53	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DRG1--ZNF72P	4	14	DRG1	5637	chr22:31816411:+	ZNF72P	16825	chr22:16635556:+	INCL_NON_REF_SPLICE	YES	125	0	0.13	1	0.047	0.1644	DRG1->chr22:31795509-31924726:+,developmentally_regulated_GTP_binding_protein_1,ZNF72P->chr22:16634898-16651926:+,zinc_finger_protein_72,_pseudogene	LN215_CENTRAL_NERVOUS_SYSTEM	0.13	1	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	IQGAP1--ZNF774	1	24	IQGAP1	2279	chr15:90934105:+	ZNF774	45943	chr15:90898583:+	ONLY_REF_SPLICE	YES	431	16	0.05	0.61	0.0117	0.2818	LOCAL_REARRANGEMENT:+:[22126],IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,ZNF774->chr15:90895477-90909324:+,zinc_finger_protein_774	LN215_CENTRAL_NERVOUS_SYSTEM	0.05	0.61	0.2935	TRUE	0	4	0	2	4	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	LZTR1--MB	4	10	LZTR1	14744	chr22:21350462:+	MB	30394	chr22:36007153:-	INCL_NON_REF_SPLICE	YES	125	10	0.1	0.58	0.047	0.1174	LZTR1->ArcherDX_panel,FoundationOne_panel,chr22:21333751-21353327:+,leucine-zipper-like_transcription_regulator_1,MB->chr22:36002811-36033998:-,myoglobin	LN215_CENTRAL_NERVOUS_SYSTEM	0.1	0.58	0.1644	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CHEK2--PRR14L	1	17	CHEK2	5887	chr22:29126408:-	PRR14L	41521	chr22:32081789:-	ONLY_REF_SPLICE	YES	38	8	0.32	0.69	0.0117	0.1996	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,PRR14L->chr22:32072242-32146126:-,proline_rich_14_like	LN215_CENTRAL_NERVOUS_SYSTEM	0.32	0.69	0.2113	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DGCR2--SEPT3	4	2	DGCR2	2450	chr22:19076881:-	SEPT3	22622	chr22:42381988:+	ONLY_REF_SPLICE	YES	46	49	0.12	0.11	0.047	0.0235	DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-,SEPT3->chr22:42372276-42394225:+,septin_3	LN215_CENTRAL_NERVOUS_SYSTEM	0.11	0.12	0.0705	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CHEK2--PRR14L	4	0	CHEK2	1654	chr22:29137757:-	PRR14L	41521	chr22:32081789:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.047	0	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,PRR14L->chr22:32072242-32146126:-,proline_rich_14_like	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DGCR2--SEPT3	3	4	DGCR2	2450	chr22:19076881:-	SEPT3	21088	chr22:42377649:+	ONLY_REF_SPLICE	YES	46	4	0.13	0.64	0.0352	0.047	DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-,SEPT3->chr22:42372276-42394225:+,septin_3	LN215_CENTRAL_NERVOUS_SYSTEM	0.13	0.64	0.0822	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ACO2--RP1-288L1.4	2	2	ACO2	1384	chr22:41865512:+	RP1-288L1.4	22838	chr22:35109964:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0235	0.0235	ACO2->aconitase_2,chr22:41865129-41924993:+,RP1-288L1.4->chr22:35107899-35120910:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	C22orf39--LARGE	2	0	C22orf39	8534	chr22:19396006:-	LARGE	62378	chr22:33562818:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,LARGE->chr22:33558212-34318829:-,like-glycosyltransferase	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CPA4--PARPBP	2	0	CPA4	7751	chr7:129946737:+	PARPBP	24902	chr12:102547647:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	CPA4->carboxypeptidase_A4,chr7:129932974-129964020:+,PARPBP->PARP1_binding_protein,chr12:102513956-102591298:+	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CTB-55O6.12--RP11-341G23.4	2	0	CTB-55O6.12	1045	chr19:14248035:+	RP11-341G23.4	10239	chr12:104160691:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	CTB-55O6.12->chr19:14247991-14282079:+,RP11-341G23.4->chr12:104140093-104162636:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DMRTA1--RP11-399D6.2	2	0	DMRTA1	1892	chr9:22447731:+	RP11-399D6.2	11667	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+,RP11-399D6.2->chr9:22646199-22824212:+	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0235	TRUE	0	1	0	4	1	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	HNRNPD--RASGEF1B	2	0	HNRNPD	3442	chr4:83292681:-	RASGEF1B	15829	chr4:82836511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D,RASGEF1B->RasGEF_domain_family_member_1B,chr4:82347547-82965397:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--BCAT1	1	2	RP11-444D3.1	1253	chr12:24715272:-	BCAT1	19076	chr12:25034345:-	ONLY_REF_SPLICE	YES	0	75	1	0.04	0.0117	0.0235	RP11-444D3.1->chr12:24366190-24715524:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0352	TRUE	0	0	0	2	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	C3orf58--SOX2-OT	1	1	C3orf58	2192	chr3:143691831:+	SOX2-OT	34533	chr3:181432973:+	ONLY_REF_SPLICE	YES	33	2	0.06	0.5	0.0117	0.0117	C3orf58->chr3:143690640-143767561:+,chromosome_3_open_reading_frame_58,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.06	0.5	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	C3orf58--SOX2-OT	1	1	C3orf58	2192	chr3:143691831:+	SOX2-OT	37906	chr3:181457357:+	ONLY_REF_SPLICE	YES	33	2	0.06	0.5	0.0117	0.0117	C3orf58->chr3:143690640-143767561:+,chromosome_3_open_reading_frame_58,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.06	0.5	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000328
PANC0813_PANCREAS	PRSS3P1--KRT8	138	0	PRSS3P1	3295	chr7:142470637:+	KRT8	17295	chr12:53293794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9003	0	PRSS3P1->chr7:142468264-142471794:+,protease,_serine_3_pseudogene_1,KRT8->chr12:53290977-53343738:-,keratin_8	PANC0813_PANCREAS	1	1	1.9003	TRUE	1	0	0	3	0	TRUE	ACH-000417
PANC0813_PANCREAS	PWWP2B--INPP5A	14	5	PWWP2B	3848	chr10:134219793:+	INPP5A	11046	chr10:134459372:+	ONLY_REF_SPLICE	YES	25	4	0.43	0.83	0.1928	0.0689	GTEx_FI:{Skin=[count:2=pct:0.6]},PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A	PANC0813_PANCREAS	0.43	0.83	0.2617	TRUE	0	0	0	1	0	TRUE	ACH-000417
PANC0813_PANCREAS	OS9--ANP32E	5	0	OS9	6854	chr12:58112048:+	ANP32E	19196	chr1:150199041:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	GTEx&tcga_normals:3/3694=0.08%,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin,ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-	PANC0813_PANCREAS	1	1	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000417
PANC0813_PANCREAS	NEK9--SOS2	4	2	NEK9	22305	chr14:75553721:-	SOS2	40643	chr14:50628327:-	ONLY_REF_SPLICE	YES	145	27	0.04	0.18	0.0551	0.0275	NEK9->NIMA_related_kinase_9,chr14:75548822-75594047:-,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	PANC0813_PANCREAS	0.04	0.18	0.0826	TRUE	0	0	0	1	0	TRUE	ACH-000417
PANC0813_PANCREAS	RP11-66B24.4--FTH1	3	1	RP11-66B24.4	7292	chr15:101436154:-	FTH1	12578	chr11:61735056:-	INCL_NON_REF_SPLICE	YES	7	0	0.36	1	0.0413	0.0138	RP11-66B24.4->chr15:101433945-101459488:-,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	PANC0813_PANCREAS	0.36	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000417
PANC0813_PANCREAS	PWWP2B--INPP5A	1	2	PWWP2B	3545	chr10:134219490:+	INPP5A	11046	chr10:134459372:+	ONLY_REF_SPLICE	YES	20	4	0.13	0.43	0.0138	0.0275	GTEx_FI:{Skin=[count:2=pct:0.6]},PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A	PANC0813_PANCREAS	0.13	0.43	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000417
RH41_SOFT_TISSUE	PAX3--FOXO1	275	107	PAX3	9270	chr2:223084859:-	FOXO1	18665	chr13:41134997:-	ONLY_REF_SPLICE	YES	0	8	1	0.98	2.6232	1.0207	Cosmic{samples=1159,mutations=380,papers=68},Mitelman{SA_rhabd_alv=2},chimerdb_omim:{alveolarrhabdomyosarcomas},chimerdb_omim:{alveolarrhabdomyosarcoma},chimerdb_omim:{pediatricalveolarrhabdomyosarcoma},chimerdb_pubmed{pediatric cancer alveolar rhabdomyosarcoma,pediatric solid tumor alveolar rhabdomyosarcoma,Rhabdomyosarcomas,rhabdomyosarcoma tumours,Alveolar rhabdomyosarcomas,Rhabdomyosarcoma, alveolar,malignant tumors,Adult cutaneous alveolar rhabdomyosarcoma,alveolar rhabdomyosarcoma (aRMS),alveolar rhabdomyosarcomas (RMS),musclederived tumor alveolar rhabdomyosarcoma,Rhabdomyosarcoma,alveolar rhabdomyosarcomas (ARMSs),alveolar rhabdomyosarcoma,Rhabdomyosarcomas (RMS),alveolar rhabdomyosarcoma tumors (ARMS),Alveolar rhabdomyosarcoma (RMS),alveolar rhabdomyosarcoma (RMS),alveolar Rhabdomyosarcoma (ARMS),alveolar Rhabdomyosarcoma (aRMS),Alveolar rhabdomyosarcoma (ARMS),alveolar rhabdomyosarcoma (ARMS),Embryonal Rhabdomyosarcoma (eRMS),Alveolar rhabdomyosarcoma (aRMS),rhabdomyosarcoma(RMS),rhabdomyosarcoma,human rhabdomyosarcoma,sarcoma,alveolar rhabdomyosarcom,Alveolar rhabdomyosarcoma},{Klijn_CCL:Sarcomatoid=1},PAX3->Oncogene{Bushman},chr2:223064607-223163715:-,paired_box_3,FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1	RH41_SOFT_TISSUE	0.98	1	3.6439	TRUE	0	0	0	2	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	PXDN--MYT1L	258	141	PXDN	1597	chr2:1748028:-	MYT1L	70748	chr2:1844615:-	ONLY_REF_SPLICE	YES	1439	0	0.22	1	2.461	1.345	LOCAL_REARRANGEMENT:-:[44261],PXDN->chr2:1635659-1748624:-,peroxidasin,MYT1L->chr2:1792885-2335032:-,myelin_transcription_factor_1_like	RH41_SOFT_TISSUE	0.22	1	3.806	TRUE	0	1	0	1	1	TRUE	ACH-000100
RH41_SOFT_TISSUE	FNBP1L--FXYD7	67	6	FNBP1L	15073	chr1:94012998:+	FXYD7	25053	chr19:35639597:+	ONLY_REF_SPLICE	YES	55	0	0.57	1	0.6391	0.0572	FNBP1L->chr1:93913688-94020218:+,formin_binding_protein_1_like,FXYD7->FXYD_domain_containing_ion_transport_regulator_7,chr19:35634154-35645204:+	RH41_SOFT_TISSUE	0.57	1	0.6963	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	ALDH1A3--ASB7	51	12	ALDH1A3	5390	chr15:101425576:+	ASB7	28477	chr15:101188528:+	ONLY_REF_SPLICE	YES	41	33	0.61	0.66	0.4865	0.1145	ALDH1A3->aldehyde_dehydrogenase_1_family_member_A3,chr15:101417919-101456831:+,ASB7->ankyrin_repeat_and_SOCS_box_containing_7,chr15:101142739-101191910:+	RH41_SOFT_TISSUE	0.61	0.66	0.601	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	COL6A2--ARNT2	46	0	COL6A2	1077	chr21:47518087:+	ARNT2	36648	chr15:80843540:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4388	0	COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,ARNT2->aryl_hydrocarbon_receptor_nuclear_translocator_2,chr15:80696692-80890278:+	RH41_SOFT_TISSUE	1	1	0.4388	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	R3HDM2--FAM19A2	15	6	R3HDM2	2356	chr12:57789532:-	FAM19A2	53467	chr12:62417560:-	ONLY_REF_SPLICE	YES	17	1	0.55	0.95	0.1431	0.0572	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	RH41_SOFT_TISSUE	0.55	0.95	0.2003	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	RPSAP52--IFNG-AS1	15	2	RPSAP52	1132	chr12:66220623:-	IFNG-AS1	7280	chr12:68389721:+	ONLY_REF_SPLICE	YES	7	0	0.71	1	0.1431	0.0191	RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,IFNG-AS1->IFNG_antisense_RNA_1,chr12:68383225-68628466:+	RH41_SOFT_TISSUE	0.71	1	0.1622	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	RP11-120I21.2--RHPN2	12	6	RP11-120I21.2	3279	chr8:84996478:+	RHPN2	8746	chr19:33535270:-	ONLY_REF_SPLICE	YES	42	8	0.3	0.69	0.1145	0.0572	RP11-120I21.2->chr8:84824948-85052518:+,RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2	RH41_SOFT_TISSUE	0.3	0.69	0.1717	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	ENOX1--PAX3	11	3	ENOX1	17550	chr13:43843606:-	PAX3	26867	chr2:223161932:-	ONLY_REF_SPLICE	YES	23	86	0.38	0.14	0.1049	0.0286	ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1,PAX3->Oncogene{Bushman},chr2:223064607-223163715:-,paired_box_3	RH41_SOFT_TISSUE	0.14	0.38	0.1335	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	RAB31--SS18	10	6	RAB31	1280	chr18:9708441:+	SS18	25285	chr18:23667541:-	ONLY_REF_SPLICE	YES	43	184	0.27	0.08	0.0954	0.0572	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,SS18->Oncogene{Bushman},SS18,_nBAF_chromatin_remodeling_complex_subunit,chr18:23596578-23671181:-	RH41_SOFT_TISSUE	0.08	0.27	0.1526	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	RPSAP52--IFNG-AS1	8	1	RPSAP52	1132	chr12:66220623:-	IFNG-AS1	8413	chr12:68399870:+	ONLY_REF_SPLICE	YES	7	0	0.56	1	0.0763	0.0095	RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,IFNG-AS1->IFNG_antisense_RNA_1,chr12:68383225-68628466:+	RH41_SOFT_TISSUE	0.56	1	0.0858	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	ALS2--STRADB	8	0	ALS2	1313	chr2:202645600:-	STRADB	48422	chr2:202319469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0763	0	ALS2->ALS2,_alsin_Rho_guanine_nucleotide_exchange_factor,chr2:202565277-202645912:-,STRADB->STE20-related_kinase_adaptor_beta,chr2:202252581-202345569:+	RH41_SOFT_TISSUE	1	1	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	GNB1--SNX29P2	8	0	GNB1	1237	chr1:1822259:-	SNX29P2	24848	chr16:29313608:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0763	0	GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-,SNX29P2->chr16:29262829-29519817:+,chr16:29362067-29381593:+,sorting_nexin_29_pseudogene_2	RH41_SOFT_TISSUE	1	1	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	OBSL1--MYCBP2-AS1	7	2	OBSL1	18282	chr2:220416251:-	MYCBP2-AS1	22087	chr13:77649653:+	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0668	0.0191	OBSL1->chr2:220415451-220436581:-,obscurin-like_1,MYCBP2-AS1->MYCBP2_antisense_RNA_1,chr13:77649649-77672677:+	RH41_SOFT_TISSUE	0.6	1	0.0859	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	R3HDM2--FAM19A2	6	5	R3HDM2	2356	chr12:57789532:-	FAM19A2	56740	chr12:62261207:-	ONLY_REF_SPLICE	YES	17	6	0.39	0.65	0.0572	0.0477	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	RH41_SOFT_TISSUE	0.39	0.65	0.1049	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	FRMD6--SLIT1	6	3	FRMD6	17389	chr14:52171653:+	SLIT1	58677	chr10:98794299:-	ONLY_REF_SPLICE	YES	22	0	0.29	1	0.0572	0.0286	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,SLIT1->chr10:98757795-98945677:-,slit_guidance_ligand_1	RH41_SOFT_TISSUE	0.29	1	0.0858	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	PAX3--FOXO1	6	3	PAX3	4967	chr2:223158886:-	FOXO1	18665	chr13:41134997:-	ONLY_REF_SPLICE	YES	87	8	0.09	0.53	0.0572	0.0286	Cosmic{samples=1159,mutations=380,papers=68},Mitelman{SA_rhabd_alv=2},chimerdb_omim:{alveolarrhabdomyosarcomas},chimerdb_omim:{alveolarrhabdomyosarcoma},chimerdb_omim:{pediatricalveolarrhabdomyosarcoma},chimerdb_pubmed{pediatric cancer alveolar rhabdomyosarcoma,pediatric solid tumor alveolar rhabdomyosarcoma,Rhabdomyosarcomas,rhabdomyosarcoma tumours,Alveolar rhabdomyosarcomas,Rhabdomyosarcoma, alveolar,malignant tumors,Adult cutaneous alveolar rhabdomyosarcoma,alveolar rhabdomyosarcoma (aRMS),alveolar rhabdomyosarcomas (RMS),musclederived tumor alveolar rhabdomyosarcoma,Rhabdomyosarcoma,alveolar rhabdomyosarcomas (ARMSs),alveolar rhabdomyosarcoma,Rhabdomyosarcomas (RMS),alveolar rhabdomyosarcoma tumors (ARMS),Alveolar rhabdomyosarcoma (RMS),alveolar rhabdomyosarcoma (RMS),alveolar Rhabdomyosarcoma (ARMS),alveolar Rhabdomyosarcoma (aRMS),Alveolar rhabdomyosarcoma (ARMS),alveolar rhabdomyosarcoma (ARMS),Embryonal Rhabdomyosarcoma (eRMS),Alveolar rhabdomyosarcoma (aRMS),rhabdomyosarcoma(RMS),rhabdomyosarcoma,human rhabdomyosarcoma,sarcoma,alveolar rhabdomyosarcom,Alveolar rhabdomyosarcoma},{Klijn_CCL:Sarcomatoid=1},PAX3->Oncogene{Bushman},chr2:223064607-223163715:-,paired_box_3,FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1	RH41_SOFT_TISSUE	0.09	0.53	0.0858	TRUE	0	0	0	2	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	UTRN--MYT1L	6	0	UTRN	2292	chr6:144613043:+	MYT1L	120755	chr2:1855475:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0572	0	UTRN->chr6:144606837-145174170:+,utrophin,MYT1L->chr2:1792885-2335032:-,myelin_transcription_factor_1_like	RH41_SOFT_TISSUE	1	1	0.0572	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	DHRS7B--KCNJ12	5	0	DHRS7B	2421	chr17:21030304:+	KCNJ12	20752	chr17:21311831:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0477	0	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,KCNJ12->chr17:21279509-21323179:+,potassium_voltage-gated_channel_subfamily_J_member_12	RH41_SOFT_TISSUE	1	1	0.0477	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	KANSL1--LRRC37A2	5	0	KANSL1	8599	chr17:44230270:-	LRRC37A2	40568	chr17:44617542:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0477	0	GTEx_FI:{Brain=[count:2=pct:0.3]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	RH41_SOFT_TISSUE	1	1	0.0477	TRUE	0	0	0	2	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	THSD1--GPC6	5	0	THSD1	2603	chr13:52976678:-	GPC6	13121	chr13:94197516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0477	0	THSD1->chr13:52951305-52980629:-,thrombospondin_type_1_domain_containing_1,GPC6->chr13:93879095-95059655:+,glypican_6	RH41_SOFT_TISSUE	1	1	0.0477	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	TMEM245--CNGB3	4	0	TMEM245	13994	chr9:111819471:-	CNGB3	45339	chr8:87623899:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0	TMEM245->chr9:111777432-111882225:-,transmembrane_protein_245,CNGB3->chr8:87566205-87755903:-,cyclic_nucleotide_gated_channel_beta_3	RH41_SOFT_TISSUE	1	1	0.0382	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	CCDC171--RUSC2	3	1	CCDC171	27752	chr9:15784692:+	RUSC2	59234	chr9:35546427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0.0095	CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171,RUSC2->RUN_and_SH3_domain_containing_2,chr9:35490124-35561895:+	RH41_SOFT_TISSUE	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	SURF4--RPLP1	3	0	SURF4	7211	chr9:136229387:-	RPLP1	11308	chr15:69745157:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0	SURF4->chr9:136228325-136242970:-,surfeit_4,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	RH41_SOFT_TISSUE	1	1	0.0286	TRUE	0	0	0	4	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	OBSL1--MYCBP2-AS1	2	0	OBSL1	18282	chr2:220416251:-	MYCBP2-AS1	27271	chr13:77672060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	OBSL1->chr2:220415451-220436581:-,obscurin-like_1,MYCBP2-AS1->MYCBP2_antisense_RNA_1,chr13:77649649-77672677:+	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	PXDN--MYT1L	2	0	PXDN	1049	chr2:1748576:-	MYT1L	70748	chr2:1844615:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	LOCAL_REARRANGEMENT:-:[44261],PXDN->chr2:1635659-1748624:-,peroxidasin,MYT1L->chr2:1792885-2335032:-,myelin_transcription_factor_1_like	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	0	1	0	1	1	TRUE	ACH-000100
RH41_SOFT_TISSUE	RAB11A--IGF2	2	0	RAB11A	3450	chr15:66085110:+	IGF2	19866	chr11:2169037:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	RAB11A->RAB11A,_member_RAS_oncogene_family,chr15:66018392-66184329:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	0	1	0	17	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	THSD1--GPC6	2	0	THSD1	1464	chr13:52980166:-	GPC6	13121	chr13:94197516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	THSD1->chr13:52951305-52980629:-,thrombospondin_type_1_domain_containing_1,GPC6->chr13:93879095-95059655:+,glypican_6	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	WBSCR22--TXNDC5	2	0	WBSCR22	1649	chr7:73098003:+	TXNDC5	19983	chr6:7904956:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+,TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	FHIT--OSBPL10	1	2	FHIT	16481	chr3:59908072:-	OSBPL10	39988	chr3:31774903:-	ONLY_REF_SPLICE	YES	8	6	0.27	0.33	0.0095	0.0191	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10	RH41_SOFT_TISSUE	0.27	0.33	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	TRAK2--CDK15	1	1	TRAK2	1230	chr2:202316073:-	CDK15	28513	chr2:202671152:+	ONLY_REF_SPLICE	NO	37	0	0.05	1	0.0095	0.0095	TRAK2->chr2:202241930-202316302:-,trafficking_protein,_kinesin_binding_2,CDK15->chr2:202655184-202760273:+,cyclin-dependent_kinase_15	RH41_SOFT_TISSUE	0.05	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000100
SNU46_UPPER_AERODIGESTIVE_TRACT	ZWILCH--MAP2K1	113	57	ZWILCH	17881	chr15:66832548:+	MAP2K1	37341	chr15:66783043:+	INCL_NON_REF_SPLICE	YES	89	91	0.66	0.65	1.4295	0.7211	LOCAL_REARRANGEMENT:+:[12647],ZWILCH->chr15:66797297-66842115:+,zwilch_kinetochore_protein,MAP2K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr15:66679155-66784650:+,mitogen-activated_protein_kinase_kinase_1	SNU46_UPPER_AERODIGESTIVE_TRACT	0.65	0.66	2.1506	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	C19orf54--STRN4	24	22	C19orf54	3073	chr19:41255386:-	STRN4	19034	chr19:47236493:-	ONLY_REF_SPLICE	YES	42	83	0.52	0.36	0.3036	0.2783	C19orf54->chr19:41246761-41257458:-,chromosome_19_open_reading_frame_54,STRN4->chr19:47222764-47250251:-,striatin_4	SNU46_UPPER_AERODIGESTIVE_TRACT	0.36	0.52	0.5819	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	CTC-550B14.7--BCKDHA	12	10	CTC-550B14.7	1272	chr19:55517832:+	BCKDHA	13031	chr19:41916542:+	ONLY_REF_SPLICE	YES	1	20	0.96	0.52	0.1518	0.1265	CTC-550B14.7->chr19:55517561-55559454:+,BCKDHA->branched_chain_keto_acid_dehydrogenase_E1,_alpha_polypeptide,chr19:41884215-41930910:+	SNU46_UPPER_AERODIGESTIVE_TRACT	0.52	0.96	0.2783	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	C19orf54--STRN4	7	24	C19orf54	4142	chr19:41251035:-	STRN4	18395	chr19:47237132:-	ONLY_REF_SPLICE	YES	44	88	0.41	0.26	0.0886	0.3036	C19orf54->chr19:41246761-41257458:-,chromosome_19_open_reading_frame_54,STRN4->chr19:47222764-47250251:-,striatin_4	SNU46_UPPER_AERODIGESTIVE_TRACT	0.26	0.41	0.3922	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	LINC00085--SHISA7	12	4	LINC00085	2216	chr19:52197808:+	SHISA7	17016	chr19:55944243:-	INCL_NON_REF_SPLICE	YES	7	1	0.7	0.94	0.1518	0.0506	LINC00085->chr19:52196593-52215640:+,SHISA7->chr19:55940107-55954230:-,shisa_family_member_7	SNU46_UPPER_AERODIGESTIVE_TRACT	0.7	0.94	0.2024	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	C19orf54--STRN4	7	23	C19orf54	4142	chr19:41251035:-	STRN4	19034	chr19:47236493:-	ONLY_REF_SPLICE	YES	44	83	0.41	0.27	0.0886	0.291	C19orf54->chr19:41246761-41257458:-,chromosome_19_open_reading_frame_54,STRN4->chr19:47222764-47250251:-,striatin_4	SNU46_UPPER_AERODIGESTIVE_TRACT	0.27	0.41	0.3796	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	EXOC4--FAM185A	8	2	EXOC4	6623	chr7:133002144:+	FAM185A	51770	chr7:102427782:+	ONLY_REF_SPLICE	YES	63	12	0.14	0.45	0.1012	0.0253	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,FAM185A->chr7:102389418-102449672:+,family_with_sequence_similarity_185_member_A	SNU46_UPPER_AERODIGESTIVE_TRACT	0.14	0.45	0.1265	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	PBX1--ATF6	8	0	PBX1	31236	chr1:164783763:+	ATF6	69738	chr1:161929246:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1012	0	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.1012	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	FAM185A--FBXL13	6	1	FAM185A	10793	chr7:102427916:+	FBXL13	37331	chr7:102495307:-	ONLY_REF_SPLICE	YES	4	1	0.64	0.88	0.0759	0.0127	LOCAL_INVERSION:+:-:[3636],FAM185A->chr7:102389418-102449672:+,family_with_sequence_similarity_185_member_A,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.64	0.88	0.0886	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	LINC00085--SHISA7	4	3	LINC00085	2216	chr19:52197808:+	SHISA7	18365	chr19:55942894:-	INCL_NON_REF_SPLICE	YES	7	4	0.5	0.64	0.0506	0.038	LINC00085->chr19:52196593-52215640:+,SHISA7->chr19:55940107-55954230:-,shisa_family_member_7	SNU46_UPPER_AERODIGESTIVE_TRACT	0.5	0.64	0.0886	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	EXOC4--FBXL13	3	5	EXOC4	6623	chr7:133002144:+	FBXL13	63713	chr7:102495307:-	ONLY_REF_SPLICE	YES	63	1	0.11	0.89	0.038	0.0633	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.11	0.89	0.1013	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	PHF21B--PROS1	4	1	PHF21B	2455	chr22:45404426:-	PROS1	29780	chr3:93646251:-	ONLY_REF_SPLICE	YES	1	27	0.83	0.16	0.0506	0.0127	PHF21B->PHD_finger_protein_21B,chr22:45277042-45405880:-,PROS1->Oncogene{Bushman},chr3:93591881-93692910:-,protein_S_(alpha)	SNU46_UPPER_AERODIGESTIVE_TRACT	0.16	0.83	0.0633	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	FAM185A--FBXL13	3	1	FAM185A	10793	chr7:102427916:+	FBXL13	39787	chr7:102462650:-	ONLY_REF_SPLICE	YES	4	3	0.5	0.57	0.038	0.0127	LOCAL_INVERSION:+:-:[3636],FAM185A->chr7:102389418-102449672:+,family_with_sequence_similarity_185_member_A,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.5	0.57	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	RBMS3--DPH3	1	5	RBMS3	19027	chr3:29985745:+	DPH3	33096	chr3:16305736:-	ONLY_REF_SPLICE	NO	15	159	0.29	0.04	0.0127	0.0633	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,DPH3->chr3:16299485-16306479:-,diphthamide_biosynthesis_3	SNU46_UPPER_AERODIGESTIVE_TRACT	0.04	0.29	0.076	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	AC009961.3--SUCLG1	2	0	AC009961.3	2693	chr2:160567228:-	SUCLG1	19142	chr2:84658783:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	AC009961.3->chr2:160527219-160568946:-,SUCLG1->chr2:84650647-84687169:-,succinate-CoA_ligase_alpha_subunit	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	ACBD6--U2AF1	2	0	ACBD6	4072	chr1:180461404:-	U2AF1	23054	chr21:44520629:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	PRRC1--AC147651.4	2	0	PRRC1	1168	chr5:126853468:+	AC147651.4	20769	chr7:647502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	PRRC1->chr5:126853301-126890781:+,proline_rich_coiled-coil_1,AC147651.4->chr7:642822-648119:+	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	EXOC4--FBXL13	1	2	EXOC4	6623	chr7:133002144:+	FBXL13	66169	chr7:102462650:-	ONLY_REF_SPLICE	YES	63	3	0.05	0.5	0.0127	0.0253	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.05	0.5	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	EXOC4--FBXL13	1	2	EXOC4	6623	chr7:133002144:+	FBXL13	64797	chr7:102473421:-	ONLY_REF_SPLICE	NO	63	1	0.05	0.75	0.0127	0.0253	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.05	0.75	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	FAM185A--FBXL13	1	1	FAM185A	10793	chr7:102427916:+	FBXL13	38415	chr7:102473421:-	ONLY_REF_SPLICE	NO	4	1	0.33	0.67	0.0127	0.0127	LOCAL_INVERSION:+:-:[3636],FAM185A->chr7:102389418-102449672:+,family_with_sequence_similarity_185_member_A,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.33	0.67	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	OXR1--RP11-152P17.2	1	1	OXR1	3409	chr8:107460276:+	RP11-152P17.2	38039	chr8:106810670:-	ONLY_REF_SPLICE	YES	1	29	0.67	0.06	0.0127	0.0127	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,RP11-152P17.2->chr8:106792474-107072752:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.06	0.67	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	PDE4D--RP11-479O16.1	1	1	PDE4D	20832	chr5:58882155:-	RP11-479O16.1	60623	chr5:58110572:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0127	0.0127	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000500
COLO684_ENDOMETRIUM	OTX2-AS1--RP11-624J12.1	115	74	OTX2-AS1	1287	chr14:57280187:+	RP11-624J12.1	15925	chr14:57015989:+	ONLY_REF_SPLICE	YES	176	0	0.52	1	0.9799	0.6306	OTX2-AS1->OTX2_antisense_RNA_1_(head_to_head),chr14:57279901-57618895:+,RP11-624J12.1->chr14:56981049-57018027:+	COLO684_ENDOMETRIUM	0.52	1	1.6105	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	OTX2-AS1--TMEM260	78	59	OTX2-AS1	1287	chr14:57280187:+	TMEM260	18681	chr14:57051719:+	ONLY_REF_SPLICE	YES	176	35	0.44	0.8	0.6647	0.5028	OTX2-AS1->OTX2_antisense_RNA_1_(head_to_head),chr14:57279901-57618895:+,TMEM260->chr14:56955072-57117324:+,transmembrane_protein_260	COLO684_ENDOMETRIUM	0.44	0.8	1.1675	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	RNF220--QSOX1	56	14	RNF220	5390	chr1:44878394:+	QSOX1	29348	chr1:180135626:+	ONLY_REF_SPLICE	YES	109	96	0.39	0.42	0.4772	0.1193	{Klijn_CCL:Ovary=1},RNF220->Oncogene{Bushman},chr1:44870866-45117396:+,ring_finger_protein_220,QSOX1->chr1:180123969-180173165:+,quiescin_sulfhydryl_oxidase_1	COLO684_ENDOMETRIUM	0.39	0.42	0.5965	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	CTD-2314B22.3--RP11-536C10.19	54	3	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	39	0	0.59	1	0.4601	0.0256	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	COLO684_ENDOMETRIUM	0.59	1	0.4857	TRUE	0	2	0	9	2	TRUE	ACH-000864
COLO684_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	7	8	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	38	0	0.28	1	0.0596	0.0682	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	COLO684_ENDOMETRIUM	0.28	1	0.1278	TRUE	0	8	0	10	8	TRUE	ACH-000864
COLO684_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	8	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	32	0	0.22	1	0.0682	0.0085	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	COLO684_ENDOMETRIUM	0.22	1	0.0767	TRUE	0	5	0	18	5	TRUE	ACH-000864
COLO684_ENDOMETRIUM	CTD-2314B22.3--RP11-536C10.19	7	5	CTD-2314B22.3	9273	chr14:19894700:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	245	0	0.05	1	0.0596	0.0426	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	COLO684_ENDOMETRIUM	0.05	1	0.1022	TRUE	0	1	0	4	1	TRUE	ACH-000864
COLO684_ENDOMETRIUM	TRAF7--TSC2	6	0	TRAF7	1161	chr16:2205859:+	TSC2	33980	chr16:2120457:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0511	0	LOCAL_REARRANGEMENT:+:[66983],TRAF7->Oncogene{Bushman},TNF_receptor_associated_factor_7,chr16:2205699-2228130:+,TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2	COLO684_ENDOMETRIUM	1	1	0.0511	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	3	8	AP000525.9	5082	chr22:16186811:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	78	0	0.12	1	0.0256	0.0682	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	COLO684_ENDOMETRIUM	0.12	1	0.0938	TRUE	0	3	0	6	3	TRUE	ACH-000864
COLO684_ENDOMETRIUM	CTD-2314B22.3--RP11-536C10.19	3	3	CTD-2314B22.3	5092	chr14:19919138:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	270	0	0.02	1	0.0256	0.0256	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	COLO684_ENDOMETRIUM	0.02	1	0.0512	TRUE	0	2	0	1	2	TRUE	ACH-000864
COLO684_ENDOMETRIUM	AREL1--PGF	3	0	AREL1	9096	chr14:75149999:-	PGF	36280	chr14:75412978:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	AREL1->apoptosis_resistant_E3_ubiquitin_protein_ligase_1,chr14:75120140-75179818:-,PGF->Oncogene{Bushman},chr14:75408537-75422487:-,placental_growth_factor	COLO684_ENDOMETRIUM	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	AREL1--PGF	3	0	AREL1	9096	chr14:75149999:-	PGF	38992	chr14:75409436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	AREL1->apoptosis_resistant_E3_ubiquitin_protein_ligase_1,chr14:75120140-75179818:-,PGF->Oncogene{Bushman},chr14:75408537-75422487:-,placental_growth_factor	COLO684_ENDOMETRIUM	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	EEF2--GPI	3	0	EEF2	3218	chr19:3983250:-	GPI	29950	chr19:34890903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	COLO684_ENDOMETRIUM	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	NAP1L1--TFDP1	3	0	NAP1L1	16885	chr12:76442980:-	TFDP1	25272	chr13:114240089:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	COLO684_ENDOMETRIUM	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	KIF22--LSMD1	2	0	KIF22	1111	chr16:29802150:+	LSMD1	14539	chr17:7786653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	KIF22->chr16:29802040-29816706:+,kinesin_family_member_22,LSMD1->chr17:7760003-7788556:-	COLO684_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	RP11-343J18.2--MVB12B	2	0	RP11-343J18.2	1235	chr9:128820093:+	MVB12B	9977	chr9:129143343:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	RP11-343J18.2->chr9:128819859-128921892:+,MVB12B->chr9:129089128-129269320:+,multivesicular_body_subunit_12B	COLO684_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	RRP7A--PGAP3	2	0	RRP7A	1089	chr22:42915720:-	PGAP3	20946	chr17:37829119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	RRP7A->chr22:42905974-42915808:-,ribosomal_RNA_processing_7_homolog_A,PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3	COLO684_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	WRN--RPL13A	2	0	WRN	3067	chr8:30916781:+	RPL13A	40651	chr19:49993489:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	COLO684_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000864
SCLC21H_LUNG	AGPAT6--DCTN6	573	4	AGPAT6	2092	chr8:41435797:+	DCTN6	22711	chr8:30021627:+	ONLY_REF_SPLICE	YES	1	1	1	1	6.5081	0.0454	AGPAT6->chr8:41434706-41482520:+,DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6	SCLC21H_LUNG	1	1	6.5535	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RRS1--SDC2	215	66	RRS1	1509	chr8:67341771:+	SDC2	14463	chr8:97605708:+	INCL_NON_REF_SPLICE	YES	19	11	0.94	0.96	2.442	0.7496	RRS1->chr8:67341263-67342966:+,ribosome_biogenesis_regulator_homolog,SDC2->chr8:97505579-97624000:+,syndecan_2	SCLC21H_LUNG	0.94	0.96	3.1916	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SDC2--CTD-3025N20.2	178	44	SDC2	11004	chr8:97614756:+	CTD-3025N20.2	19618	chr8:66447099:-	ONLY_REF_SPLICE	YES	15	0	0.94	1	2.0217	0.4997	SDC2->chr8:97505579-97624000:+,syndecan_2,CTD-3025N20.2->chr8:66439243-66475015:-	SCLC21H_LUNG	0.94	1	2.5214	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	BAG4--OR7E15P	121	65	BAG4	1607	chr8:38034657:+	OR7E15P	12354	chr8:12554688:-	INCL_NON_REF_SPLICE	YES	38	0	0.83	1	1.3743	0.7383	BAG4->BCL2_associated_athanogene_4,chr8:38034051-38070819:+,OR7E15P->chr8:12553816-12554782:-,olfactory_receptor_family_7_subfamily_E_member_15_pseudogene	SCLC21H_LUNG	0.83	1	2.1126	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	BAG4--OR7E15P	85	134	BAG4	2715	chr8:38050313:+	OR7E15P	12354	chr8:12554688:-	INCL_NON_REF_SPLICE	YES	15	0	0.94	1	0.9654	1.522	BAG4->BCL2_associated_athanogene_4,chr8:38034051-38070819:+,OR7E15P->chr8:12553816-12554782:-,olfactory_receptor_family_7_subfamily_E_member_15_pseudogene	SCLC21H_LUNG	0.94	1	2.4874	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SENP7--FAM167A	104	42	SENP7	4395	chr3:101177799:-	FAM167A	39048	chr8:11282145:-	ONLY_REF_SPLICE	YES	33	26	0.82	0.85	1.1812	0.477	SENP7->SUMO1/sentrin_specific_peptidase_7,chr3:101043049-101232085:-,FAM167A->chr8:11278972-11332224:-,family_with_sequence_similarity_167_member_A	SCLC21H_LUNG	0.82	0.85	1.6582	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	PRKDC--RP11-785H20.1	104	31	PRKDC	52152	chr8:48761715:-	RP11-785H20.1	89906	chr8:122901064:+	ONLY_REF_SPLICE	YES	56	0	0.71	1	1.1812	0.3521	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,RP11-785H20.1->chr8:122896963-122916512:+	SCLC21H_LUNG	0.71	1	1.5333	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	EXT1--DCTN6	82	51	EXT1	2769	chr8:119122324:-	DCTN6	24436	chr8:30021627:+	ONLY_REF_SPLICE	YES	10	1	0.93	0.99	0.9314	0.5793	{Klijn_CCL:Lung=1},EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6	SCLC21H_LUNG	0.93	0.99	1.5107	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	PDE7A--GS1-24F4.2	84	29	PDE7A	7679	chr8:66691955:-	GS1-24F4.2	28355	chr8:6699190:+	ONLY_REF_SPLICE	YES	11	5	0.91	0.96	0.9541	0.3294	PDE7A->chr8:66629745-66754557:-,phosphodiesterase_7A,GS1-24F4.2->chr8:6693076-6742798:+	SCLC21H_LUNG	0.91	0.96	1.2835	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	MMP16--CNGB3	84	22	MMP16	1951	chr8:89339304:-	CNGB3	31377	chr8:87683326:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.9541	0.2499	MMP16->chr8:89044237-89340254:-,matrix_metallopeptidase_16,CNGB3->chr8:87566205-87755903:-,cyclic_nucleotide_gated_channel_beta_3	SCLC21H_LUNG	1	1	1.204	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	APTX--DNAJA1	70	35	APTX	1365	chr9:33024802:-	DNAJA1	26353	chr9:33038683:+	ONLY_REF_SPLICE	YES	38	344	0.73	0.23	0.7951	0.3975	LOCAL_INVERSION:-:+:[43],APTX->aprataxin,chr9:32972604-33025166:-,DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+	SCLC21H_LUNG	0.23	0.73	1.1926	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	PSIP1--FAM167A	65	18	PSIP1	1903	chr9:15510115:-	FAM167A	31969	chr8:11282145:-	ONLY_REF_SPLICE	YES	50	26	0.62	0.76	0.7383	0.2044	PSIP1->Oncogene{Bushman},PC4_and_SFRS1_interacting_protein_1,chr9:15464064-15511017:-,FAM167A->chr8:11278972-11332224:-,family_with_sequence_similarity_167_member_A	SCLC21H_LUNG	0.62	0.76	0.9427	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	DNAJA1--CHST9	61	15	DNAJA1	7577	chr9:33037113:+	CHST9	17631	chr18:24524330:-	ONLY_REF_SPLICE	YES	364	7	0.17	0.92	0.6928	0.1704	DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+,CHST9->carbohydrate_sulfotransferase_9,chr18:24495595-24765281:-	SCLC21H_LUNG	0.17	0.92	0.8632	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	AGPAT6--DCTN6	54	3	AGPAT6	2092	chr8:41435797:+	DCTN6	24962	chr8:30032601:+	ONLY_REF_SPLICE	YES	1	22	0.98	0.72	0.6133	0.0341	AGPAT6->chr8:41434706-41482520:+,DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6	SCLC21H_LUNG	0.72	0.98	0.6474	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SDC2--RP11-758M4.4	38	30	SDC2	11004	chr8:97614756:+	RP11-758M4.4	21971	chr8:75730903:-	ONLY_REF_SPLICE	YES	15	0	0.82	1	0.4316	0.3407	SDC2->chr8:97505579-97624000:+,syndecan_2,RP11-758M4.4->chr8:75711019-75779174:-	SCLC21H_LUNG	0.82	1	0.7723	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	MMP16--CNGB3	31	35	MMP16	1951	chr8:89339304:-	CNGB3	29923	chr8:87716630:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3521	0.3975	MMP16->chr8:89044237-89340254:-,matrix_metallopeptidase_16,CNGB3->chr8:87566205-87755903:-,cyclic_nucleotide_gated_channel_beta_3	SCLC21H_LUNG	1	1	0.7496	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	BAG4--OR7E15P	3	125	BAG4	2715	chr8:38050313:+	OR7E15P	12357	chr8:12554685:-	INCL_NON_REF_SPLICE	YES	15	0	0.9	1	0.0341	1.4197	BAG4->BCL2_associated_athanogene_4,chr8:38034051-38070819:+,OR7E15P->chr8:12553816-12554782:-,olfactory_receptor_family_7_subfamily_E_member_15_pseudogene	SCLC21H_LUNG	0.9	1	1.4538	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SDC2--RP11-758M4.4	31	13	SDC2	11004	chr8:97614756:+	RP11-758M4.4	25589	chr8:75711554:-	ONLY_REF_SPLICE	YES	15	0	0.75	1	0.3521	0.1477	SDC2->chr8:97505579-97624000:+,syndecan_2,RP11-758M4.4->chr8:75711019-75779174:-	SCLC21H_LUNG	0.75	1	0.4998	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	EXT1--DCTN6	17	35	EXT1	2769	chr8:119122324:-	DCTN6	26687	chr8:30032601:+	ONLY_REF_SPLICE	YES	10	22	0.84	0.7	0.1931	0.3975	{Klijn_CCL:Lung=1},EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6	SCLC21H_LUNG	0.7	0.84	0.5906	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	FUT10--SFRP1	25	0	FUT10	1359	chr8:33330582:-	SFRP1	21436	chr8:41123008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2839	0	FUT10->chr8:33228342-33330940:-,fucosyltransferase_10,SFRP1->chr8:41119481-41167016:-,secreted_frizzled-related_protein_1	SCLC21H_LUNG	1	1	0.2839	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	DNMT3A--ADCY3	20	11	DNMT3A	9100	chr2:25475063:-	ADCY3	28027	chr2:25142053:-	ONLY_REF_SPLICE	YES	13	3	0.7	0.91	0.2272	0.1249	{Klijn_CCL:Lung=1},DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-,ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-	SCLC21H_LUNG	0.7	0.91	0.3521	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SDC2--CTD-3025N20.2	20	7	SDC2	11004	chr8:97614756:+	CTD-3025N20.2	24304	chr8:66439820:-	ONLY_REF_SPLICE	YES	15	34	0.64	0.44	0.2272	0.0795	SDC2->chr8:97505579-97624000:+,syndecan_2,CTD-3025N20.2->chr8:66439243-66475015:-	SCLC21H_LUNG	0.44	0.64	0.3067	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	KIF3A--SHROOM1	19	3	KIF3A	4509	chr5:132061820:-	SHROOM1	26872	chr5:132161874:-	ONLY_REF_SPLICE	YES	32	5	0.41	0.81	0.2158	0.0341	LOCAL_REARRANGEMENT:-:[84503],KIF3A->chr5:132028320-132073330:-,kinesin_family_member_3A,SHROOM1->chr5:132157833-132166590:-,shroom_family_member_1	SCLC21H_LUNG	0.41	0.81	0.2499	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	HMBOX1--RP11-317N12.1	15	1	HMBOX1	1285	chr8:28748195:+	RP11-317N12.1	28566	chr8:33653812:+	ONLY_REF_SPLICE	YES	8	0	0.67	1	0.1704	0.0114	HMBOX1->chr8:28747911-28922281:+,homeobox_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	SCLC21H_LUNG	0.67	1	0.1818	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RP11-1023L17.1--NUP98	13	7	RP11-1023L17.1	4445	chr5:34218400:-	NUP98	24925	chr11:3794969:-	ONLY_REF_SPLICE	YES	24	53	0.45	0.27	0.1477	0.0795	RP11-1023L17.1->chr5:34164803-34244901:-,NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa	SCLC21H_LUNG	0.27	0.45	0.2272	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	TNFRSF21--PTCHD4	13	6	TNFRSF21	5903	chr6:47220992:-	PTCHD4	18864	chr6:47847672:-	ONLY_REF_SPLICE	YES	77	0	0.2	1	0.1477	0.0681	TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21,PTCHD4->chr6:47845764-48036425:-,patched_domain_containing_4	SCLC21H_LUNG	0.2	1	0.2158	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	EYA1--GS1-57L11.1	13	0	EYA1	12929	chr8:72156838:-	GS1-57L11.1	24986	chr8:2662104:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1477	0	EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-,GS1-57L11.1->chr8:2584858-2680004:+	SCLC21H_LUNG	1	1	0.1477	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RP11-317N12.1--RP11-89M16.1	12	4	RP11-317N12.1	4633	chr8:33653954:+	RP11-89M16.1	12870	chr8:129573372:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1363	0.0454	RP11-317N12.1->chr8:33462374-33896526:+,RP11-89M16.1->chr8:129417515-129576925:-	SCLC21H_LUNG	0.94	1	0.1817	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	DNAJA1--CHST9	10	11	DNAJA1	7577	chr9:33037113:+	CHST9	18669	chr18:24497314:-	ONLY_REF_SPLICE	YES	364	7	0.05	0.75	0.1136	0.1249	DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+,CHST9->carbohydrate_sulfotransferase_9,chr18:24495595-24765281:-	SCLC21H_LUNG	0.05	0.75	0.2385	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	UBXN8--BMP1	10	8	UBXN8	10731	chr8:30620863:+	BMP1	23116	chr8:22037218:+	ONLY_REF_SPLICE	YES	18	7	0.5	0.72	0.1136	0.0909	UBXN8->UBX_domain_protein_8,chr8:30589764-30624522:+,BMP1->bone_morphogenetic_protein_1,chr8:22022249-22069839:+	SCLC21H_LUNG	0.5	0.72	0.2045	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	DNMT3A--ADCY3	10	7	DNMT3A	7982	chr2:25497810:-	ADCY3	28027	chr2:25142053:-	ONLY_REF_SPLICE	YES	7	3	0.71	0.85	0.1136	0.0795	{Klijn_CCL:Lung=1},DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-,ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-	SCLC21H_LUNG	0.71	0.85	0.1931	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	8	15	SPIDR	7740	chr8:48206619:+	GATA4	39834	chr8:11534430:+	INCL_NON_REF_SPLICE	YES	84	0	0.21	1	0.0909	0.1704	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.21	1	0.2613	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	EXT1--DCTN6	6	19	EXT1	2769	chr8:119122324:-	DCTN6	27793	chr8:30034642:+	ONLY_REF_SPLICE	YES	10	241	0.71	0.09	0.0681	0.2158	{Klijn_CCL:Lung=1},EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6	SCLC21H_LUNG	0.09	0.71	0.2839	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	7	12	SPIDR	7740	chr8:48206619:+	GATA4	42012	chr8:11558017:+	ONLY_REF_SPLICE	YES	84	0	0.18	1	0.0795	0.1363	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.18	1	0.2158	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	APTX--DNAJA1	1	35	APTX	1365	chr9:33024802:-	DNAJA1	21248	chr9:33029883:+	ONLY_REF_SPLICE	YES	38	378	0.49	0.09	0.0114	0.3975	LOCAL_INVERSION:-:+:[43],APTX->aprataxin,chr9:32972604-33025166:-,DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+	SCLC21H_LUNG	0.09	0.49	0.4089	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	CDK8--FGF14	8	7	CDK8	4959	chr13:26928017:+	FGF14	20635	chr13:102527646:-	ONLY_REF_SPLICE	YES	54	1	0.22	0.94	0.0909	0.0795	CDK8->ArcherDX_panel,FoundationOne_panel,chr13:26828276-26979375:+,cyclin-dependent_kinase_8,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	SCLC21H_LUNG	0.22	0.94	0.1704	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SDC2--RP11-758M4.4	2	31	SDC2	11004	chr8:97614756:+	RP11-758M4.4	18748	chr8:75778869:-	ONLY_REF_SPLICE	YES	15	0	0.69	1	0.0227	0.3521	SDC2->chr8:97505579-97624000:+,syndecan_2,RP11-758M4.4->chr8:75711019-75779174:-	SCLC21H_LUNG	0.69	1	0.3748	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	FUT10--CTD-3080F16.3	9	0	FUT10	1359	chr8:33330582:-	CTD-3080F16.3	18249	chr8:41132846:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1022	0	FUT10->chr8:33228342-33330940:-,fucosyltransferase_10,CTD-3080F16.3->chr8:41132634-41134522:-	SCLC21H_LUNG	1	1	0.1022	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	AC093642.5--XX-C2158C6.2	7	7	AC093642.5	6865	chr2:243064606:+	XX-C2158C6.2	15418	chr6:171054606:+	ONLY_REF_SPLICE	YES	20	0	0.41	1	0.0795	0.0795	AC093642.5->chr2:243030784-243102304:+,XX-C2158C6.2->chr6:171054606-171055065:+	SCLC21H_LUNG	0.41	1	0.159	TRUE	0	0	0	2	0	TRUE	ACH-000659
SCLC21H_LUNG	SDC2--RP11-758M4.4	1	30	SDC2	11004	chr8:97614756:+	RP11-758M4.4	19865	chr8:75758188:-	ONLY_REF_SPLICE	YES	15	0	0.67	1	0.0114	0.3407	SDC2->chr8:97505579-97624000:+,syndecan_2,RP11-758M4.4->chr8:75711019-75779174:-	SCLC21H_LUNG	0.67	1	0.3521	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	ZFAT--ZMAT4	8	1	ZFAT	25315	chr8:135524718:-	ZMAT4	39595	chr8:40625249:-	ONLY_REF_SPLICE	YES	8	1	0.53	0.9	0.0909	0.0114	ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing,ZMAT4->chr8:40388109-40755352:-,zinc_finger_matrin-type_4	SCLC21H_LUNG	0.53	0.9	0.1023	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	CUL2--FAM167A	7	4	CUL2	1213	chr10:35379358:-	FAM167A	35282	chr8:11282145:-	ONLY_REF_SPLICE	YES	9	26	0.55	0.3	0.0795	0.0454	CUL2->chr10:35297479-35379570:-,cullin_2,FAM167A->chr8:11278972-11332224:-,family_with_sequence_similarity_167_member_A	SCLC21H_LUNG	0.3	0.55	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	DNMT3A--ADCY3	7	4	DNMT3A	7982	chr2:25497810:-	ADCY3	31005	chr2:25095588:-	ONLY_REF_SPLICE	YES	7	57	0.61	0.16	0.0795	0.0454	{Klijn_CCL:Lung=1},DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-,ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-	SCLC21H_LUNG	0.16	0.61	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	PSIP1--FAM167A	7	4	PSIP1	1203	chr9:15510815:-	FAM167A	31969	chr8:11282145:-	ONLY_REF_SPLICE	YES	0	26	1	0.3	0.0795	0.0454	PSIP1->Oncogene{Bushman},PC4_and_SFRS1_interacting_protein_1,chr9:15464064-15511017:-,FAM167A->chr8:11278972-11332224:-,family_with_sequence_similarity_167_member_A	SCLC21H_LUNG	0.3	1	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SDC2--CTD-3025N20.2	4	16	SDC2	11004	chr8:97614756:+	CTD-3025N20.2	20755	chr8:66445359:-	ONLY_REF_SPLICE	YES	15	9	0.57	0.69	0.0454	0.1817	SDC2->chr8:97505579-97624000:+,syndecan_2,CTD-3025N20.2->chr8:66439243-66475015:-	SCLC21H_LUNG	0.57	0.69	0.2271	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	AC093642.5--XX-C2158C6.2	5	9	AC093642.5	9202	chr2:243081039:+	XX-C2158C6.2	15418	chr6:171054606:+	ONLY_REF_SPLICE	YES	12	0	0.54	1	0.0568	0.1022	AC093642.5->chr2:243030784-243102304:+,XX-C2158C6.2->chr6:171054606-171055065:+	SCLC21H_LUNG	0.54	1	0.159	TRUE	0	1	0	2	1	TRUE	ACH-000659
SCLC21H_LUNG	SENP7--FAM167A	3	17	SENP7	3297	chr3:101212717:-	FAM167A	39048	chr8:11282145:-	ONLY_REF_SPLICE	YES	49	26	0.29	0.43	0.0341	0.1931	SENP7->SUMO1/sentrin_specific_peptidase_7,chr3:101043049-101232085:-,FAM167A->chr8:11278972-11332224:-,family_with_sequence_similarity_167_member_A	SCLC21H_LUNG	0.29	0.43	0.2272	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	TPD52--RP11-1149M10.2	7	1	TPD52	6214	chr8:81083660:-	RP11-1149M10.2	31481	chr8:82070817:+	ONLY_REF_SPLICE	YES	118	28	0.06	0.22	0.0795	0.0114	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,RP11-1149M10.2->chr8:82066514-82076834:+	SCLC21H_LUNG	0.06	0.22	0.0909	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	KIF3A--SEPT8	6	4	KIF3A	4509	chr5:132061820:-	SEPT8	29949	chr5:132101221:-	ONLY_REF_SPLICE	YES	32	32	0.24	0.24	0.0681	0.0454	LOCAL_REARRANGEMENT:-:[13179],KIF3A->chr5:132028320-132073330:-,kinesin_family_member_3A,SEPT8->chr5:132086509-132142933:-,septin_8	SCLC21H_LUNG	0.24	0.24	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	ATP6V1H--OXR1	6	2	ATP6V1H	14490	chr8:54708207:-	OXR1	25992	chr8:107371704:+	ONLY_REF_SPLICE	YES	68	0	0.11	1	0.0681	0.0227	ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-,OXR1->chr8:107282473-107764922:+,oxidation_resistance_1	SCLC21H_LUNG	0.11	1	0.0908	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	AC093642.5--XX-C2158C6.2	5	5	AC093642.5	2310	chr2:243037178:+	XX-C2158C6.2	15418	chr6:171054606:+	ONLY_REF_SPLICE	YES	47	0	0.18	1	0.0568	0.0568	AC093642.5->chr2:243030784-243102304:+,XX-C2158C6.2->chr6:171054606-171055065:+	SCLC21H_LUNG	0.18	1	0.1136	TRUE	0	2	0	2	2	TRUE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	6	1	SPIDR	7740	chr8:48206619:+	GATA4	47633	chr8:11606428:+	ONLY_REF_SPLICE	YES	84	0	0.08	1	0.0681	0.0114	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.08	1	0.0795	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RP11-1023L17.1--NUP98	4	6	RP11-1023L17.1	4445	chr5:34218400:-	NUP98	26033	chr11:3793158:-	ONLY_REF_SPLICE	YES	24	47	0.29	0.18	0.0454	0.0681	RP11-1023L17.1->chr5:34164803-34244901:-,NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa	SCLC21H_LUNG	0.18	0.29	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	C8orf47--FZD6	5	1	C8orf47	1417	chr8:99076955:+	FZD6	9285	chr8:104312184:+	ONLY_REF_SPLICE	YES	12	27	0.33	0.18	0.0568	0.0114	C8orf47->chr8:99076539-99105838:+,FZD6->chr8:104310661-104345094:+,frizzled_class_receptor_6	SCLC21H_LUNG	0.18	0.33	0.0682	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RP11-785H20.1--RP11-758M4.1	5	1	RP11-785H20.1	2314	chr8:122901216:+	RP11-758M4.1	8284	chr8:75525088:+	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0568	0.0114	RP11-785H20.1->chr8:122896963-122916512:+,RP11-758M4.1->chr8:75512010-75735548:+	SCLC21H_LUNG	0.67	1	0.0682	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	AGPAT6--DCTN6	4	4	AGPAT6	2092	chr8:41435797:+	DCTN6	21650	chr8:30013862:+	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0454	0.0454	AGPAT6->chr8:41434706-41482520:+,DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6	SCLC21H_LUNG	0.89	1	0.0908	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	1	12	SPIDR	7740	chr8:48206619:+	GATA4	42015	chr8:11558020:+	ONLY_REF_SPLICE	NO	84	0	0.13	1	0.0114	0.1363	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.13	1	0.1477	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	APTX--DNAJA1	3	0	APTX	1146	chr9:33025021:-	DNAJA1	26353	chr9:33038683:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	LOCAL_INVERSION:-:+:[43],APTX->aprataxin,chr9:32972604-33025166:-,DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+	SCLC21H_LUNG	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	UBXN8--BMP1	2	4	UBXN8	10731	chr8:30620863:+	BMP1	24895	chr8:22049562:+	ONLY_REF_SPLICE	YES	18	16	0.25	0.27	0.0227	0.0454	UBXN8->UBX_domain_protein_8,chr8:30589764-30624522:+,BMP1->bone_morphogenetic_protein_1,chr8:22022249-22069839:+	SCLC21H_LUNG	0.25	0.27	0.0681	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	XKR5--MTFR1	3	0	XKR5	5926	chr8:6681043:-	MTFR1	33472	chr8:66683182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	XKR5->XK_related_5,chr8:6666038-6693166:-,MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1	SCLC21H_LUNG	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	ZHX2--ATP6V1C1	3	0	ZHX2	1553	chr8:123794185:+	ATP6V1C1	12878	chr8:104053026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	ZHX2->chr8:123793633-123986750:+,zinc_fingers_and_homeoboxes_2,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+	SCLC21H_LUNG	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SCNN1D--ZFAT	2	3	SCNN1D	1231	chr1:1216046:+	ZFAT	30057	chr8:135602598:-	ONLY_REF_SPLICE	YES	7	12	0.42	0.29	0.0227	0.0341	SCNN1D->chr1:1215816-1227409:+,sodium_channel_epithelial_1_delta_subunit,ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing	SCLC21H_LUNG	0.29	0.42	0.0568	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	1	7	SPIDR	7740	chr8:48206619:+	GATA4	45557	chr8:11565365:+	ONLY_REF_SPLICE	NO	84	2	0.09	0.8	0.0114	0.0795	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.09	0.8	0.0909	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	2	3	SPIDR	6576	chr8:48203726:+	GATA4	42012	chr8:11558017:+	ONLY_REF_SPLICE	YES	48	0	0.09	1	0.0227	0.0341	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.09	1	0.0568	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	C8orf12--POP1	2	2	C8orf12	4652	chr8:11258674:+	POP1	22358	chr8:99158796:+	ONLY_REF_SPLICE	NO	3	5	0.57	0.44	0.0227	0.0227	{Klijn_CCL:Lung=1},C8orf12->chr8:11225911-11296167:+,POP1->POP1_homolog,_ribonuclease_P/MRP_subunit,chr8:99129525-99172062:+	SCLC21H_LUNG	0.44	0.57	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	LRRC38--POP1	2	2	LRRC38	2086	chr1:13839458:-	POP1	21668	chr8:99168278:+	ONLY_REF_SPLICE	YES	1	40	0.8	0.09	0.0227	0.0227	LRRC38->chr1:13801445-13840543:-,leucine_rich_repeat_containing_38,POP1->POP1_homolog,_ribonuclease_P/MRP_subunit,chr8:99129525-99172062:+	SCLC21H_LUNG	0.09	0.8	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	LZTS1--XKR6	2	2	LZTS1	1224	chr8:20161251:-	XKR6	19847	chr8:10782340:-	ONLY_REF_SPLICE	YES	13	2	0.24	0.67	0.0227	0.0227	LZTS1->chr8:20103676-20161474:-,leucine_zipper,_putative_tumor_suppressor_1,XKR6->XK_related_6,chr8:10753555-11058875:-	SCLC21H_LUNG	0.24	0.67	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	ENTPD4--RP11-400K9.4	2	1	ENTPD4	12534	chr8:23291830:-	RP11-400K9.4	25853	chr8:54429514:-	ONLY_REF_SPLICE	YES	55	0	0.05	1	0.0227	0.0114	ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4,RP11-400K9.4->chr8:54427731-54436491:-	SCLC21H_LUNG	0.05	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RMDN1--RP11-152P17.2	2	1	RMDN1	1116	chr8:87526471:-	RP11-152P17.2	27509	chr8:106810670:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0.0114	RMDN1->chr8:87480486-87526586:-,regulator_of_microtubule_dynamics_1,RP11-152P17.2->chr8:106792474-107072752:-	SCLC21H_LUNG	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	AC010642.1--GNAS	2	0	AC010642.1	7746	chr19:58817582:+	GNAS	29330	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	AC010642.1->chr19:58790332-58826563:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	CAPN15--NOC4L	2	0	CAPN15	2366	chr16:583998:+	NOC4L	24151	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CAPN15->calpain_15,chr16:577717-604636:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SCLC21H_LUNG	1	1	0.0227	TRUE	0	6	0	4	3	TRUE	ACH-000659
SCLC21H_LUNG	CHD2--GIGYF2	2	0	CHD2	6529	chr15:93444529:+	GIGYF2	85137	chr2:233651860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	12	0	TRUE	ACH-000659
SCLC21H_LUNG	HECTD1--SAFB2	2	0	HECTD1	3008	chr14:31675003:-	SAFB2	63030	chr19:5592898:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,SAFB2->chr19:5587010-5624057:-,scaffold_attachment_factor_B2	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	MIPEPP3--TP53BP1	2	0	MIPEPP3	2501	chr13:21875757:+	TP53BP1	18458	chr15:43762264:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	PDE7A--GS1-24F4.2	2	0	PDE7A	7679	chr8:66691955:-	GS1-24F4.2	31313	chr8:6742644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PDE7A->chr8:66629745-66754557:-,phosphodiesterase_7A,GS1-24F4.2->chr8:6693076-6742798:+	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SFRP1--UTP23	2	0	SFRP1	4229	chr8:41160980:-	UTP23	21034	chr8:117861127:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SFRP1->chr8:41119481-41167016:-,secreted_frizzled-related_protein_1,UTP23->UTP23,_small_subunit_processome_component,chr8:117778742-117861702:+	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SRPK1--RALGAPA2	2	0	SRPK1	8769	chr6:35854501:-	RALGAPA2	68159	chr20:20392792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-,RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	TMEM185A--MTMR1	2	0	TMEM185A	7111	chrX:148685653:-	MTMR1	25018	chrX:149898581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TMEM185A->chrX:148678216-148713568:-,transmembrane_protein_185A,MTMR1->chrX:149861435-149933576:+,myotubularin_related_protein_1	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	TUB--SIX3-AS1	2	0	TUB	12982	chr11:8122544:+	SIX3-AS1	22138	chr2:45167972:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TUB->chr11:8040791-8127659:+,tubby_bipartite_transcription_factor,SIX3-AS1->SIX3_antisense_RNA_1,chr2:45167293-45169012:-	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	UBR5--HP1BP3	2	0	UBR5	41208	chr8:103283362:-	HP1BP3	64135	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	ZFAT--MICU3	2	0	ZFAT	1205	chr8:135725088:-	MICU3	34137	chr8:16921593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing,MICU3->chr8:16884747-16980153:+,mitochondrial_calcium_uptake_family_member_3	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SCNN1D--ZFAT	1	3	SCNN1D	2884	chr1:1217699:+	ZFAT	30057	chr8:135602598:-	ONLY_REF_SPLICE	YES	1	12	0.8	0.25	0.0114	0.0341	SCNN1D->chr1:1215816-1227409:+,sodium_channel_epithelial_1_delta_subunit,ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing	SCLC21H_LUNG	0.25	0.8	0.0455	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	DNMT3A--ADCY3	1	2	DNMT3A	7982	chr2:25497810:-	ADCY3	32363	chr2:25065253:-	ONLY_REF_SPLICE	YES	7	66	0.3	0.04	0.0114	0.0227	{Klijn_CCL:Lung=1},DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-,ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-	SCLC21H_LUNG	0.04	0.3	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SORBS3--CHMP7	1	2	SORBS3	11181	chr8:22422034:+	CHMP7	24809	chr8:23103769:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0114	0.0227	SORBS3->chr8:22402499-22433301:+,sorbin_and_SH3_domain_containing_3,CHMP7->charged_multivesicular_body_protein_7,chr8:23101150-23119512:+	SCLC21H_LUNG	0.6	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	1	2	SPIDR	6576	chr8:48203726:+	GATA4	45557	chr8:11565365:+	ONLY_REF_SPLICE	YES	48	2	0.06	0.6	0.0114	0.0227	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.06	0.6	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	DPYSL2--SNTG1	1	1	DPYSL2	1405	chr8:26372195:+	SNTG1	42040	chr8:51442737:+	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0114	0.0114	DPYSL2->chr8:26371791-26515694:+,dihydropyrimidinase_like_2,SNTG1->chr8:50822349-51706678:+,syntrophin_gamma_1	SCLC21H_LUNG	0.11	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000659
NUGC2_STOMACH	FLNB--SLMAP	184	51	FLNB	1457	chr3:57994583:+	SLMAP	71262	chr3:57875768:+	ONLY_REF_SPLICE	YES	290	27	0.45	0.9	1.797	0.4981	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	NUGC2_STOMACH	0.45	0.9	2.2951	TRUE	0	2	0	1	1	TRUE	ACH-000761
NUGC2_STOMACH	AC093642.5--AC131097.3	133	21	AC093642.5	2310	chr2:243037178:+	AC131097.3	21655	chr2:243020611:+	ONLY_REF_SPLICE	YES	13	0	0.92	1	1.2989	0.2051	LOCAL_REARRANGEMENT:+:[9911],AC093642.5->chr2:243030784-243102304:+,AC131097.3->chr2:242823514-243020873:+	NUGC2_STOMACH	0.92	1	1.504	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	BMPR2--WDR12	93	40	BMPR2	3957	chr2:203332412:+	WDR12	37534	chr2:203760942:-	ONLY_REF_SPLICE	YES	35	50	0.79	0.73	0.9083	0.3907	{Klijn_CCL:Stomach=1},BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,WDR12->WD_repeat_domain_12,chr2:203739505-203879521:-	NUGC2_STOMACH	0.73	0.79	1.299	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	LSM4--ELL	95	17	LSM4	3592	chr19:18423414:-	ELL	13605	chr19:18583692:-	ONLY_REF_SPLICE	YES	555	52	0.17	0.68	0.9278	0.166	{Klijn_CCL:Stomach=1},LSM4->LSM4_homolog,_U6_small_nuclear_RNA_and_mRNA_degradation_associated,chr19:18417040-18434084:-,ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II	NUGC2_STOMACH	0.17	0.68	1.0938	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	HIC1--RP11-382A18.2	62	30	HIC1	2085	chr17:1958532:+	RP11-382A18.2	9542	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	69	0	0.57	1	0.6055	0.293	HIC1->Oncogene{Bushman},chr17:1957448-1962981:+,hypermethylated_in_cancer_1,RP11-382A18.2->chr8:128351519-128404876:+	NUGC2_STOMACH	0.57	1	0.8985	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	HIC1--DPH1	36	29	HIC1	2085	chr17:1958532:+	DPH1	19144	chr17:1945899:+	ONLY_REF_SPLICE	YES	69	251	0.49	0.21	0.3516	0.2832	LOCAL_REARRANGEMENT:+:[10724],HIC1->Oncogene{Bushman},chr17:1957448-1962981:+,hypermethylated_in_cancer_1,DPH1->Oncogene{Bushman},chr17:1933404-1946724:+,diphthamide_biosynthesis_1	NUGC2_STOMACH	0.21	0.49	0.6348	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	BMPR2--WDR12	20	51	BMPR2	3957	chr2:203332412:+	WDR12	36418	chr2:203762138:-	ONLY_REF_SPLICE	YES	35	46	0.67	0.61	0.1953	0.4981	{Klijn_CCL:Stomach=1},BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,WDR12->WD_repeat_domain_12,chr2:203739505-203879521:-	NUGC2_STOMACH	0.61	0.67	0.6934	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	LIN9--LINC00266-1	25	3	LIN9	7639	chr1:226474034:-	LINC00266-1	21664	chr20:62926244:+	ONLY_REF_SPLICE	YES	20	0	0.58	1	0.2442	0.0293	LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component,LINC00266-1->chr20:62921738-62944485:+,long_intergenic_non-protein_coding_RNA_266-1	NUGC2_STOMACH	0.58	1	0.2735	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	FAM69B--AC023669.1	24	0	FAM69B	2294	chr9:139612163:+	AC023669.1	10511	chr7:46303498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2344	0	FAM69B->chr9:139607022-139618502:+,family_with_sequence_similarity_69_member_B,AC023669.1->chr7:46300662-46334067:+	NUGC2_STOMACH	1	1	0.2344	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	PTP4A3--PHACTR3	23	0	PTP4A3	1092	chr8:142402184:+	PHACTR3	17902	chr20:58318162:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2246	0	PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3,PHACTR3->chr20:58152564-58422766:+,phosphatase_and_actin_regulator_3	NUGC2_STOMACH	1	1	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	FLNB--SLMAP	6	52	FLNB	1457	chr3:57994583:+	SLMAP	70149	chr3:57857363:+	ONLY_REF_SPLICE	YES	290	27	0.17	0.68	0.0586	0.5078	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	NUGC2_STOMACH	0.17	0.68	0.5664	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	BRPF3--MAPK14	16	10	BRPF3	13382	chr6:36190042:+	MAPK14	26640	chr6:36040650:+	ONLY_REF_SPLICE	YES	48	61	0.35	0.3	0.1563	0.0977	LOCAL_REARRANGEMENT:+:[85508],BRPF3->bromodomain_and_PHD_finger_containing_3,chr6:36164521-36200567:+,MAPK14->Oncogene{Bushman},chr6:35995488-36079013:+,mitogen-activated_protein_kinase_14	NUGC2_STOMACH	0.3	0.35	0.254	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	FLNB--SLMAP	9	33	FLNB	1457	chr3:57994583:+	SLMAP	73700	chr3:57882238:+	ONLY_REF_SPLICE	YES	290	23	0.13	0.65	0.0879	0.3223	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	NUGC2_STOMACH	0.13	0.65	0.4102	TRUE	0	2	0	1	1	TRUE	ACH-000761
NUGC2_STOMACH	LUC7L2--UBN2	15	7	LUC7L2	7910	chr7:139092096:+	UBN2	19336	chr7:138936702:+	ONLY_REF_SPLICE	YES	95	2	0.19	0.92	0.1465	0.0684	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[33124],LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+,UBN2->chr7:138915102-138992982:+,ubinuclein_2	NUGC2_STOMACH	0.19	0.92	0.2149	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	BRPF3--MAPK14	13	8	BRPF3	12284	chr6:36185787:+	MAPK14	26640	chr6:36040650:+	ONLY_REF_SPLICE	YES	30	61	0.41	0.26	0.127	0.0781	LOCAL_REARRANGEMENT:+:[85508],BRPF3->bromodomain_and_PHD_finger_containing_3,chr6:36164521-36200567:+,MAPK14->Oncogene{Bushman},chr6:35995488-36079013:+,mitogen-activated_protein_kinase_14	NUGC2_STOMACH	0.26	0.41	0.2051	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	FLNB--SLMAP	1	50	FLNB	1457	chr3:57994583:+	SLMAP	71267	chr3:57875773:+	ONLY_REF_SPLICE	NO	290	27	0.15	0.65	0.0098	0.4883	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	NUGC2_STOMACH	0.15	0.65	0.4981	TRUE	0	2	0	1	1	TRUE	ACH-000761
NUGC2_STOMACH	FAM53A--LETM1	6	0	FAM53A	1070	chr4:1685960:-	LETM1	26026	chr4:1827410:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0586	0	FAM53A->chr4:1619642-1686029:-,family_with_sequence_similarity_53_member_A,LETM1->chr4:1813206-1857974:-,leucine_zipper_and_EF-hand_containing_transmembrane_protein_1	NUGC2_STOMACH	1	1	0.0586	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	BMPR2--WDR12	3	6	BMPR2	3957	chr2:203332412:+	WDR12	39941	chr2:203757425:-	ONLY_REF_SPLICE	YES	35	61	0.2	0.13	0.0293	0.0586	{Klijn_CCL:Stomach=1},BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,WDR12->WD_repeat_domain_12,chr2:203739505-203879521:-	NUGC2_STOMACH	0.13	0.2	0.0879	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	IGFBP7--KRT17	4	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	NUGC2_STOMACH	1	1	0.0391	TRUE	0	0	0	9	0	TRUE	ACH-000761
NUGC2_STOMACH	ITGB8--GPNMB	4	0	ITGB8	17741	chr7:20441749:+	GPNMB	37662	chr7:23296511:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0391	0	ITGB8->chr7:20370325-20455377:+,integrin_subunit_beta_8,GPNMB->Oncogene{Bushman},chr7:23275586-23314727:+,glycoprotein_nmb	NUGC2_STOMACH	1	1	0.0391	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	TMEM65--HRH3	3	2	TMEM65	1839	chr8:125384095:-	HRH3	14776	chr20:60793713:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0293	0.0195	TMEM65->chr8:125324231-125384933:-,transmembrane_protein_65,HRH3->chr20:60790026-60795323:-,histamine_receptor_H3	NUGC2_STOMACH	0.56	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	RFXAP--ITGAX	3	1	RFXAP	1734	chr13:37394094:+	ITGAX	21173	chr16:31388120:+	ONLY_REF_SPLICE	YES	26	3	0.13	0.57	0.0293	0.0098	RFXAP->chr13:37393361-37403241:+,regulatory_factor_X_associated_protein,ITGAX->Oncogene{Bushman},chr16:31366455-31394318:+,integrin_subunit_alpha_X	NUGC2_STOMACH	0.13	0.57	0.0391	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	CASC9--RP11-300E4.2	3	0	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0293	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NUGC2_STOMACH	1	1	0.0293	TRUE	0	23	0	19	23	TRUE	ACH-000761
NUGC2_STOMACH	DCAF10--ZNF484	3	0	DCAF10	4216	chr9:37842283:+	ZNF484	20394	chr9:95637341:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	DCAF10->DDB1_and_CUL4_associated_factor_10,chr9:37800499-37867663:+,ZNF484->chr9:95607874-95640304:-,zinc_finger_protein_484	NUGC2_STOMACH	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	RP11-392P7.6--GFOD2	2	0	RP11-392P7.6	1078	chr12:13080737:+	GFOD2	25132	chr16:67709956:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	RP11-392P7.6->chr12:13080660-13137579:+,GFOD2->chr16:67708434-67753324:-,glucose-fructose_oxidoreductase_domain_containing_2	NUGC2_STOMACH	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	SFMBT1--EXOSC1	2	0	SFMBT1	10546	chr3:52968829:-	EXOSC1	37888	chr10:99197507:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	SFMBT1->Scm-like_with_four_mbt_domains_1,chr3:52937588-53080766:-,EXOSC1->chr10:99195899-99205774:-,exosome_component_1	NUGC2_STOMACH	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	UBL3--SLC7A1	2	0	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	NUGC2_STOMACH	1	1	0.0195	TRUE	1	5	0	8	1	TRUE	ACH-000761
NUGC2_STOMACH	NBPF18P--AL450992.2	1	1	NBPF18P	4409	chr1:151986607:+	AL450992.2	18191	chr1:151816521:+	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0098	0.0098	NBPF18P->chr1:151967007-152015250:+,neuroblastoma_breakpoint_family_member_18,_pseudogene,AL450992.2->chr1:151814353-151822861:+	NUGC2_STOMACH	0.5	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	NBPF18P--AL450992.2	1	1	NBPF18P	3300	chr1:151983458:+	AL450992.2	18191	chr1:151816521:+	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0098	0.0098	NBPF18P->chr1:151967007-152015250:+,neuroblastoma_breakpoint_family_member_18,_pseudogene,AL450992.2->chr1:151814353-151822861:+	NUGC2_STOMACH	0.5	0.67	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000761
TM31_CENTRAL_NERVOUS_SYSTEM	SORBS2--SLC9B1	59	16	SORBS2	44125	chr4:186535985:-	SLC9B1	58795	chr4:103912869:-	ONLY_REF_SPLICE	YES	153	0	0.33	1	0.6626	0.1797	SORBS2->Oncogene{Bushman},chr4:186506598-186877806:-,sorbin_and_SH3_domain_containing_2,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	TM31_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.8423	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	IRF2--LINC01060	51	37	IRF2	1202	chr4:185395533:-	LINC01060	17568	chr4:189357858:+	ONLY_REF_SPLICE	YES	47	0	0.65	1	0.5727	0.4155	IRF2->ArcherDX_panel,FoundationOne_panel,chr4:185308867-185395734:-,interferon_regulatory_factor_2,LINC01060->chr4:189321890-189602205:+,long_intergenic_non-protein_coding_RNA_1060	TM31_CENTRAL_NERVOUS_SYSTEM	0.65	1	0.9882	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	VMP1--CLCN3	33	0	VMP1	1557	chr17:57785109:+	CLCN3	25754	chr4:170557064:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3706	0	VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,CLCN3->chloride_voltage-gated_channel_3,chr4:170533784-170644824:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.3706	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	AHCTF1--RP11-80B9.1	27	6	AHCTF1	30251	chr1:247024201:-	RP11-80B9.1	46268	chr1:240931452:+	ONLY_REF_SPLICE	YES	35	0	0.49	1	0.3032	0.0674	AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,RP11-80B9.1->chr1:240928857-240931980:+	TM31_CENTRAL_NERVOUS_SYSTEM	0.49	1	0.3706	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GPR173--FAM156B	23	8	GPR173	1394	chrX:53078666:+	FAM156B	14533	chrX:52928494:+	ONLY_REF_SPLICE	YES	17	13	0.65	0.7	0.2583	0.0898	GPR173->G_protein-coupled_receptor_173,chrX:53078273-53109797:+,FAM156B->chrX:52920336-52937587:+,family_with_sequence_similarity_156_member_B	TM31_CENTRAL_NERVOUS_SYSTEM	0.65	0.7	0.3481	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	SLC16A9--IPMK	12	2	SLC16A9	2674	chr10:61469237:-	IPMK	16358	chr10:59997575:-	ONLY_REF_SPLICE	YES	33	24	0.3	0.37	0.1348	0.0225	SLC16A9->chr10:61410523-61495760:-,solute_carrier_family_16_member_9,IPMK->chr10:59951278-60027694:-,inositol_polyphosphate_multikinase	TM31_CENTRAL_NERVOUS_SYSTEM	0.3	0.37	0.1573	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	EMILIN2--SOGA2	12	1	EMILIN2	1902	chr18:2847929:+	SOGA2	20638	chr18:8718422:+	ONLY_REF_SPLICE	YES	13	81	0.5	0.14	0.1348	0.0112	EMILIN2->chr18:2847028-2915991:+,elastin_microfibril_interfacer_2,SOGA2->chr18:8705659-8832776:+	TM31_CENTRAL_NERVOUS_SYSTEM	0.14	0.5	0.146	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	PSMB4--CD44	7	0	PSMB4	2312	chr1:151373321:+	CD44	31781	chr11:35252592:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0786	0	PSMB4->chr1:151372010-151374420:+,proteasome_subunit_beta_4,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0786	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RPS16--ATP5B	5	0	RPS16	3268	chr19:39924321:-	ATP5B	7571	chr12:57038970:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	RPS16->chr19:39923847-39926588:-,ribosomal_protein_S16,ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	SORBS2--SLC9B1	1	16	SORBS2	44125	chr4:186535985:-	SLC9B1	57740	chr4:103936079:-	ONLY_REF_SPLICE	YES	153	0	0.1	1	0.0112	0.1797	SORBS2->Oncogene{Bushman},chr4:186506598-186877806:-,sorbin_and_SH3_domain_containing_2,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	TM31_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.1909	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	APCDD1--LAMA1	4	1	APCDD1	4128	chr18:10472058:+	LAMA1	46469	chr18:7002384:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0449	0.0112	APCDD1->adenomatosis_polyposis_coli_down-regulated_1,chr18:10454625-10489945:+,LAMA1->chr18:6941743-7117813:-,laminin_subunit_alpha_1	TM31_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.0561	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GPR173--FAM156B	4	1	GPR173	1394	chrX:53078666:+	FAM156B	15607	chrX:52929594:+	ONLY_REF_SPLICE	YES	17	13	0.23	0.28	0.0449	0.0112	GPR173->G_protein-coupled_receptor_173,chrX:53078273-53109797:+,FAM156B->chrX:52920336-52937587:+,family_with_sequence_similarity_156_member_B	TM31_CENTRAL_NERVOUS_SYSTEM	0.23	0.28	0.0561	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GPR173--FAM156B	1	10	GPR173	1394	chrX:53078666:+	FAM156B	14124	chrX:52928085:+	ONLY_REF_SPLICE	YES	17	16	0.39	0.41	0.0112	0.1123	GPR173->G_protein-coupled_receptor_173,chrX:53078273-53109797:+,FAM156B->chrX:52920336-52937587:+,family_with_sequence_similarity_156_member_B	TM31_CENTRAL_NERVOUS_SYSTEM	0.39	0.41	0.1235	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	CCDC85C--HEATR1	3	1	CCDC85C	6426	chr14:100002352:-	HEATR1	18535	chr1:236767427:-	ONLY_REF_SPLICE	YES	16	1	0.2	0.8	0.0337	0.0112	CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C,HEATR1->HEAT_repeat_containing_1,chr1:236712305-236767804:-	TM31_CENTRAL_NERVOUS_SYSTEM	0.2	0.8	0.0449	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NRP2--FLG	3	0	NRP2	18212	chr2:206614528:+	FLG	48772	chr1:152276138:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	NRP2->chr2:206546714-206662857:+,neuropilin_2,FLG->chr1:152274651-152297679:-,filaggrin	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NRP2--FLG	3	0	NRP2	18201	chr2:206614517:+	FLG	42927	chr1:152281983:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	NRP2->chr2:206546714-206662857:+,neuropilin_2,FLG->chr1:152274651-152297679:-,filaggrin	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NRP2--FLG	3	0	NRP2	18212	chr2:206614528:+	FLG	47800	chr1:152277110:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	NRP2->chr2:206546714-206662857:+,neuropilin_2,FLG->chr1:152274651-152297679:-,filaggrin	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NRP2--FLG	3	0	NRP2	18201	chr2:206614517:+	FLG	48762	chr1:152276148:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	NRP2->chr2:206546714-206662857:+,neuropilin_2,FLG->chr1:152274651-152297679:-,filaggrin	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NRP2--FLG	3	0	NRP2	18197	chr2:206614513:+	FLG	47786	chr1:152277124:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	NRP2->chr2:206546714-206662857:+,neuropilin_2,FLG->chr1:152274651-152297679:-,filaggrin	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NRP2--FLG	3	0	NRP2	18212	chr2:206614528:+	FLG	42937	chr1:152281973:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	NRP2->chr2:206546714-206662857:+,neuropilin_2,FLG->chr1:152274651-152297679:-,filaggrin	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	ABCB7--UPRT	2	0	ABCB7	1628	chrX:74375940:-	UPRT	26096	chrX:74516177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ABCB7->ATP_binding_cassette_subfamily_B_member_7,chrX:74273115-74376567:-,UPRT->chrX:74493920-74524435:+,uracil_phosphoribosyltransferase_homolog	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	2	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	ALG10B--SMCO2	2	0	ALG10B	2881	chr12:38712260:+	SMCO2	14030	chr12:27627719:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ALG10B->ALG10B,_alpha-1,2-glucosyltransferase,chr12:38710380-38717784:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	AP2M1--CSDE1	2	0	AP2M1	6526	chr3:183898669:+	CSDE1	20751	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	AP2M1->adaptor_related_protein_complex_2_mu_1_subunit,chr3:183892477-183901879:+,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	ATP5B--IVNS1ABP	2	0	ATP5B	4557	chr12:57036242:-	IVNS1ABP	17049	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	1	0	1	1	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	CACNA2D1--BAZ1B	2	0	CACNA2D1	4816	chr7:81964451:-	BAZ1B	56963	chr7:72892899:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CACNA2D1->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_1,chr7:81575760-82073114:-,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	CTD-3018O17.3--AADAT	2	0	CTD-3018O17.3	3169	chr19:52898851:-	AADAT	12610	chr4:171010887:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CTD-3018O17.3->chr19:52892095-52901019:-,AADAT->aminoadipate_aminotransferase,chr4:170981373-171012850:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	DCP1B--ZNF667-AS1	2	0	DCP1B	8051	chr12:2074724:-	ZNF667-AS1	22287	chr19:57005532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	DCP1B->chr12:2055220-2113701:-,decapping_mRNA_1B,ZNF667-AS1->ZNF667_antisense_RNA_1_(head_to_head),chr19:56988619-57012035:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	DIAPH3--AC074212.6	2	0	DIAPH3	10484	chr13:60582678:-	AC074212.6	38476	chr19:46274748:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3,AC074212.6->chr19:46271054-46275762:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	DKC1--FLNA	2	0	DKC1	1226	chrX:153991256:+	FLNA	18589	chrX:153596458:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	DKC1->Oncogene{Bushman},chrX:153991031-154005964:+,dyskerin_pseudouridine_synthase_1,FLNA->chrX:153576892-153603006:-,filamin_A	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	DKK1--PATL1	2	0	DKK1	3140	chr10:54076195:+	PATL1	16251	chr11:59420060:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	DKK1->Oncogene{Bushman},chr10:54074056-54077802:+,dickkopf_WNT_signaling_pathway_inhibitor_1,PATL1->PAT1_homolog_1,_processing_body_mRNA_decay_factor,chr11:59404189-59436453:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	FAM115A--RPIA	2	0	FAM115A	6016	chr7:143573082:-	RPIA	28572	chr2:89049498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	FAM115A->chr7:143548468-143599291:-,RPIA->chr2:88991162-89050452:+,ribose_5-phosphate_isomerase_A	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	FAM20C--PRKAR1B	2	0	FAM20C	5852	chr7:208976:+	PRKAR1B	22217	chr7:751164:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cortex=1},{Klijn_CCL:Skin=1},FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	2	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	FNTB--HNRNPC	2	0	FNTB	4635	chr14:65453815:+	HNRNPC	31819	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GAK--PIGG	2	0	GAK	18449	chr4:877825:-	PIGG	60961	chr4:527607:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase,PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GIGYF2--ZSWIM7	2	0	GIGYF2	18641	chr2:233626146:+	ZSWIM7	64699	chr17:15880406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,ZSWIM7->chr17:15879874-15903031:-,zinc_finger_SWIM-type_containing_7	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GPR173--FAM156B	2	0	GPR173	1394	chrX:53078666:+	FAM156B	16700	chrX:52936136:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GPR173->G_protein-coupled_receptor_173,chrX:53078273-53109797:+,FAM156B->chrX:52920336-52937587:+,family_with_sequence_similarity_156_member_B	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GSE1--FUS	2	0	GSE1	2365	chr16:85647004:+	FUS	33496	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	HERPUD2--GEN1	2	0	HERPUD2	7849	chr7:35677960:-	GEN1	16155	chr2:17941196:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	HERPUD2->HERPUD_family_member_2,chr7:35672269-35735181:-,GEN1->GEN1,_Holliday_junction_5'_flap_endonuclease,Oncogene{Bushman},chr2:17935125-17966632:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	MED13L--NEDD4L	2	0	MED13L	3147	chr12:116675273:-	NEDD4L	51057	chr18:55833020:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,NEDD4L->chr18:55711599-56068772:+,neural_precursor_cell_expressed,_developmentally_down-regulated_4-like,_E3_ubiquitin_protein_ligase	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	MEG8--ZFYVE26	2	0	MEG8	5852	chr14:101373469:+	ZFYVE26	33793	chr14:68251994:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	MEG8->chr14:101361107-101402336:+,maternally_expressed_8_(non-protein_coding),ZFYVE26->Oncogene{Bushman},chr14:68194091-68283307:-,zinc_finger_FYVE-type_containing_26	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NAV2--CDK8	2	0	NAV2	1304	chr11:19372574:+	CDK8	62306	chr13:26923209:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	NAV2->chr11:19372271-20143144:+,neuron_navigator_2,CDK8->ArcherDX_panel,FoundationOne_panel,chr13:26828276-26979375:+,cyclin-dependent_kinase_8	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	PCMTD1--MYH9	2	0	PCMTD1	7395	chr8:52758221:-	MYH9	40695	chr22:36701148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	PRRC2B--CDC25C	2	0	PRRC2B	8645	chr9:134322593:+	CDC25C	46920	chr5:137661743:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RNF180--PAPD4	2	0	RNF180	1110	chr5:63461780:+	PAPD4	31998	chr5:78964715:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RNF180->chr5:63461671-63668696:+,ring_finger_protein_180,PAPD4->PAP_associated_domain_containing_4,chr5:78907943-78982471:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RP11-196G11.1--MAPKAPK5	2	0	RP11-196G11.1	1400	chr16:31105878:-	MAPKAPK5	14596	chr12:112303054:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RP11-196G11.1->chr16:31094760-31106277:-,MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RP5-864K19.4--SRP9	2	0	RP5-864K19.4	1240	chr1:39325911:+	SRP9	9083	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RP5-864K19.4->chr1:39325672-39385068:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RPUSD3--ARPC4	2	0	RPUSD3	3620	chr3:9883667:-	ARPC4	16726	chr3:9845527:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},LOCAL_INVERSION:-:+:[30123],RPUSD3->RNA_pseudouridylate_synthase_domain_containing_3,chr3:9879533-9886286:-,ARPC4->actin_related_protein_2/3_complex_subunit_4,chr3:9834179-9849410:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	SERAC1--GTF2H5	2	0	SERAC1	15556	chr6:158551405:-	GTF2H5	32285	chr6:158613009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[72],SERAC1->chr6:158530536-158589312:-,serine_active_site_containing_1,GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	SSH3--C9orf72	2	0	SSH3	5181	chr11:67075929:+	C9orf72	13516	chr9:27567162:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	SSH3->chr11:67070919-67080078:+,slingshot_protein_phosphatase_3,C9orf72->chr9:27546544-27573864:-,chromosome_9_open_reading_frame_72	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	TICAM1--NUP88	2	0	TICAM1	1091	chr19:4831626:-	NUP88	22632	chr17:5290430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1,NUP88->chr17:5264258-5323480:-,nucleoporin_88	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	TMEM117--RAD17	2	0	TMEM117	3724	chr12:44338145:+	RAD17	19183	chr5:68666862:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117,RAD17->RAD17_checkpoint_clamp_loader_component,chr5:68665120-68710628:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	TMEM126B--AHSA2	2	0	TMEM126B	6035	chr11:85346822:+	AHSA2	11357	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TMEM126B->chr11:85339629-85347580:+,transmembrane_protein_126B,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	TMEM30A--MAN2A1	2	0	TMEM30A	6490	chr6:75970540:-	MAN2A1	21333	chr5:109091030:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TMEM30A->chr6:75962640-75994684:-,transmembrane_protein_30A,MAN2A1->chr5:109025067-109205326:+,mannosidase_alpha_class_2A_member_1	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	UQCRC2--GLB1	2	0	UQCRC2	1797	chr16:21964777:+	GLB1	32512	chr3:33087724:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,GLB1->Oncogene{Bushman},chr3:33038100-33138722:-,galactosidase_beta_1	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	ZNF519--MAPK14	2	0	ZNF519	2343	chr18:14124349:-	MAPK14	35575	chr6:36070348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,MAPK14->Oncogene{Bushman},chr6:35995488-36079013:+,mitogen-activated_protein_kinase_14	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	ZRANB3--PIGG	2	0	ZRANB3	2907	chr2:136261899:-	PIGG	55814	chr4:524225:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3,PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	EVL--KCNH1	1	1	EVL	9362	chr14:100563995:+	KCNH1	38747	chr1:211192598:-	ONLY_REF_SPLICE	NO	55	1	0.04	0.67	0.0112	0.0112	EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+,KCNH1->Oncogene{Bushman},chr1:210856555-211307457:-,potassium_voltage-gated_channel_subfamily_H_member_1	TM31_CENTRAL_NERVOUS_SYSTEM	0.04	0.67	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000592
SKPNDW_BONE	EWSR1--FLI1	96	106	EWSR1	11554	chr22:29683123:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	389	5	0.34	0.98	1.7751	1.96	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKPNDW_BONE	0.34	0.98	3.7351	TRUE	0	0	0	6	0	TRUE	ACH-001193
SKPNDW_BONE	EWSR1--FLI1	3	47	EWSR1	11554	chr22:29683123:+	FLI1	40528	chr11:128679052:+	ONLY_REF_SPLICE	YES	389	19	0.11	0.72	0.0555	0.869	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKPNDW_BONE	0.11	0.72	0.9245	TRUE	0	0	0	5	0	TRUE	ACH-001193
SKPNDW_BONE	NSF--LRRC37A2	5	12	NSF	15332	chr17:44782220:+	LRRC37A2	28875	chr17:44588877:+	ONLY_REF_SPLICE	YES	180	0	0.09	1	0.0925	0.2219	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	SKPNDW_BONE	0.09	1	0.3144	TRUE	1	0	0	3	0	TRUE	ACH-001193
SKPNDW_BONE	NSF--LRRC37A2	4	11	NSF	15332	chr17:44782220:+	LRRC37A2	33686	chr17:44594728:+	ONLY_REF_SPLICE	YES	180	31	0.08	0.33	0.074	0.2034	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	SKPNDW_BONE	0.08	0.33	0.2774	TRUE	1	0	0	3	0	TRUE	ACH-001193
SKPNDW_BONE	BRPF3--MAPK14	5	4	BRPF3	16926	chr6:36198493:+	MAPK14	26640	chr6:36040650:+	INCL_NON_REF_SPLICE	YES	50	122	0.15	0.07	0.0925	0.074	LOCAL_REARRANGEMENT:+:[85508],BRPF3->bromodomain_and_PHD_finger_containing_3,chr6:36164521-36200567:+,MAPK14->Oncogene{Bushman},chr6:35995488-36079013:+,mitogen-activated_protein_kinase_14	SKPNDW_BONE	0.07	0.15	0.1665	TRUE	0	0	0	1	0	TRUE	ACH-001193
SKPNDW_BONE	C17orf76-AS1--GNAS	4	0	C17orf76-AS1	1593	chr17:16342728:+	GNAS	29039	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.074	0	C17orf76-AS1->chr17:16342136-16381992:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKPNDW_BONE	1	1	0.074	TRUE	0	0	0	4	0	TRUE	ACH-001193
SKPNDW_BONE	TBC1D1--C4orf19	3	1	TBC1D1	20643	chr4:38055959:+	C4orf19	42463	chr4:37559649:+	ONLY_REF_SPLICE	YES	15	0	0.21	1	0.0555	0.0185	TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+,C4orf19->chr4:37455563-37625117:+,chromosome_4_open_reading_frame_19	SKPNDW_BONE	0.21	1	0.074	TRUE	0	0	0	1	0	TRUE	ACH-001193
SKPNDW_BONE	FAM160B1--PKN2	2	0	FAM160B1	3629	chr10:116593161:+	PKN2	23225	chr1:89206671:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	FAM160B1->chr10:116581503-116659591:+,family_with_sequence_similarity_160_member_B1,PKN2->chr1:89149905-89301938:+,protein_kinase_N2	SKPNDW_BONE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-001193
SKPNDW_BONE	NFIC--AHSA2	2	0	NFIC	9118	chr19:3435205:+	AHSA2	27240	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	SKPNDW_BONE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-001193
SKPNDW_BONE	POLR3B--DEK	2	0	POLR3B	25722	chr12:106857398:+	DEK	36635	chr6:18258636:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	POLR3B->chr12:106751436-106903976:+,polymerase_(RNA)_III_subunit_B,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	SKPNDW_BONE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-001193
SKPNDW_BONE	SOX6--TTC3	2	0	SOX6	47012	chr11:16007750:-	TTC3	76212	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	SOX6->SRY-box_6,chr11:15987995-16761138:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SKPNDW_BONE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-001193
HEC251_ENDOMETRIUM	RECQL5--H3F3B	55	26	RECQL5	12732	chr17:73635949:-	H3F3B	29028	chr17:73775265:-	ONLY_REF_SPLICE	YES	59	666	0.58	0.11	0.6673	0.3155	RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-,H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-	HEC251_ENDOMETRIUM	0.11	0.58	0.9828	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	INO80B--WDR54	57	10	INO80B	1378	chr2:74682527:+	WDR54	12879	chr2:74652564:+	INCL_NON_REF_SPLICE	YES	6	39	0.92	0.63	0.6916	0.1213	LOCAL_REARRANGEMENT:+:[29268],INO80B->INO80_complex_subunit_B,chr2:74682150-74688011:+,WDR54->WD_repeat_domain_54,chr2:74648805-74652882:+	HEC251_ENDOMETRIUM	0.63	0.92	0.8129	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	RECQL5--H3F3B	19	17	RECQL5	9289	chr17:73647266:-	H3F3B	29028	chr17:73775265:-	ONLY_REF_SPLICE	YES	52	666	0.41	0.05	0.2305	0.2063	RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-,H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-	HEC251_ENDOMETRIUM	0.05	0.41	0.4368	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	RECQL5--H3F3B	9	32	RECQL5	13623	chr17:73635058:-	H3F3B	29028	chr17:73775265:-	ONLY_REF_SPLICE	YES	71	666	0.37	0.06	0.1092	0.3882	RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-,H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-	HEC251_ENDOMETRIUM	0.06	0.37	0.4974	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	RECQL5--H3F3B	8	30	RECQL5	13579	chr17:73635102:-	H3F3B	29028	chr17:73775265:-	ONLY_REF_SPLICE	YES	69	666	0.36	0.05	0.0971	0.364	RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-,H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-	HEC251_ENDOMETRIUM	0.05	0.36	0.4611	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	APC--PIK3R1	11	7	APC	5179	chr5:112102087:+	PIK3R1	39493	chr5:67569215:+	INCL_NON_REF_SPLICE	YES	14	14	0.56	0.56	0.1335	0.0849	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,PIK3R1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:67511548-67597649:+,phosphoinositide-3-kinase_regulatory_subunit_1	HEC251_ENDOMETRIUM	0.56	0.56	0.2184	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	NPHP4--PDCL	10	3	NPHP4	34785	chr1:5925532:-	PDCL	45506	chr9:125581559:-	INCL_NON_REF_SPLICE	YES	19	16	0.41	0.45	0.1213	0.0364	NPHP4->chr1:5922871-6052533:-,nephronophthisis_4,PDCL->chr9:125560668-125590910:-,phosducin_like	HEC251_ENDOMETRIUM	0.41	0.45	0.1577	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	C1orf132--CD34	7	5	C1orf132	2221	chr1:208041271:-	CD34	26049	chr1:208073348:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0849	0.0607	LOCAL_REARRANGEMENT:-:[15099],C1orf132->chr1:207974863-208042495:-,chromosome_1_open_reading_frame_132,CD34->CD34_molecule,chr1:208057594-208084747:-	HEC251_ENDOMETRIUM	1	1	0.1456	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	FAM49B--ASAP1	4	3	FAM49B	2813	chr8:130983189:-	ASAP1	54362	chr8:131149284:-	ONLY_REF_SPLICE	YES	22	35	0.24	0.17	0.0485	0.0364	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[34978],FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-	HEC251_ENDOMETRIUM	0.17	0.24	0.0849	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	INO80B--WDR54	3	1	INO80B	1152	chr2:74682301:+	WDR54	12901	chr2:74652586:+	INCL_NON_REF_SPLICE	YES	10	37	0.29	0.1	0.0364	0.0121	LOCAL_REARRANGEMENT:+:[29268],INO80B->INO80_complex_subunit_B,chr2:74682150-74688011:+,WDR54->WD_repeat_domain_54,chr2:74648805-74652882:+	HEC251_ENDOMETRIUM	0.1	0.29	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	KDM2A--RHOD	3	0	KDM2A	2906	chr11:66888829:+	RHOD	35271	chr11:66833367:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	YOSHIHARA_TCGA_num_samples[BRCA:2|LUSC:1],LOCAL_REARRANGEMENT:+:[47256],KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A,RHOD->chr11:66824289-66839484:+,ras_homolog_family_member_D	HEC251_ENDOMETRIUM	1	1	0.0364	TRUE	0	5	0	1	5	TRUE	ACH-000996
HEC251_ENDOMETRIUM	AIFM3--SNAP29	2	0	AIFM3	3838	chr22:21322263:+	SNAP29	19009	chr22:21235337:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_REARRANGEMENT:+:[73890],AIFM3->apoptosis_inducing_factor,_mitochondria_associated_3,chr22:21319396-21335649:+,SNAP29->chr22:21213271-21245506:+,synaptosome_associated_protein_29kDa	HEC251_ENDOMETRIUM	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	ALDH1L2--PHF5A	2	0	ALDH1L2	12874	chr12:105445868:-	PHF5A	34811	chr22:41856491:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ALDH1L2->aldehyde_dehydrogenase_1_family_member_L2,chr12:105413568-105478355:-,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	HEC251_ENDOMETRIUM	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	CPSF6--IVNS1ABP	2	0	CPSF6	11046	chr12:69656342:+	IVNS1ABP	26367	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	HEC251_ENDOMETRIUM	1	1	0.0243	TRUE	0	0	0	3	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	RPS5--ZFYVE20	2	0	RPS5	5815	chr19:58905962:+	ZFYVE20	11494	chr3:15137795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	RPS5->chr19:58897767-58906173:+,ribosomal_protein_S5,ZFYVE20->chr3:15111580-15140670:-	HEC251_ENDOMETRIUM	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	APC--PIK3R1	1	2	APC	4114	chr5:112090722:+	PIK3R1	39496	chr5:67569218:+	ONLY_REF_SPLICE	YES	16	14	0.16	0.18	0.0121	0.0243	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,PIK3R1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:67511548-67597649:+,phosphoinositide-3-kinase_regulatory_subunit_1	HEC251_ENDOMETRIUM	0.16	0.18	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	INO80B--WDR54	1	1	INO80B	1274	chr2:74682423:+	WDR54	13082	chr2:74652767:+	ONLY_REF_SPLICE	YES	11	9	0.15	0.18	0.0121	0.0121	LOCAL_REARRANGEMENT:+:[29268],INO80B->INO80_complex_subunit_B,chr2:74682150-74688011:+,WDR54->WD_repeat_domain_54,chr2:74648805-74652882:+	HEC251_ENDOMETRIUM	0.15	0.18	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000996
SKES1_BONE	EWSR1--FLI1	364	137	EWSR1	11554	chr22:29683123:+	FLI1	35098	chr11:128651853:+	ONLY_REF_SPLICE	YES	394	0	0.56	1	3.4116	1.284	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKES1_BONE	0.56	1	4.6956	TRUE	0	0	0	5	0	TRUE	ACH-000087
SKES1_BONE	ARID1A--NUDC	327	126	ARID1A	7728	chr1:27059283:+	NUDC	32665	chr1:27267948:+	ONLY_REF_SPLICE	YES	135	604	0.77	0.43	3.0648	1.1809	ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,NUDC->chr1:27226729-27273353:+,nudC_nuclear_distribution_protein	SKES1_BONE	0.43	0.77	4.2457	TRUE	0	1	0	1	1	TRUE	ACH-000087
SKES1_BONE	SMCO4--EWSR1	157	38	SMCO4	1233	chr11:93276442:-	EWSR1	24309	chr22:29688126:+	ONLY_REF_SPLICE	YES	5	189	0.97	0.51	1.4715	0.3562	SMCO4->chr11:93211638-93276674:-,single-pass_membrane_protein_with_coiled-coil_domains_4,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	SKES1_BONE	0.51	0.97	1.8277	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	PCYT1A--CSNK2A2	68	35	PCYT1A	8116	chr3:195974238:-	CSNK2A2	30250	chr16:58201699:-	ONLY_REF_SPLICE	YES	47	36	0.69	0.74	0.6373	0.328	PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha,CSNK2A2->casein_kinase_2_alpha_2,chr16:58191811-58231824:-	SKES1_BONE	0.69	0.74	0.9653	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	ERP44--RP11-218I7.2	67	11	ERP44	12249	chr9:102747249:-	RP11-218I7.2	20934	chr9:6066365:+	ONLY_REF_SPLICE	YES	62	0	0.56	1	0.628	0.1031	ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44,RP11-218I7.2->chr9:6047360-6066714:+	SKES1_BONE	0.56	1	0.7311	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	TMEM245--AAED1	63	6	TMEM245	1611	chr9:111881615:-	AAED1	30156	chr9:99417055:-	ONLY_REF_SPLICE	YES	28	1	0.71	0.99	0.5905	0.0562	TMEM245->chr9:111777432-111882225:-,transmembrane_protein_245,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	SKES1_BONE	0.71	0.99	0.6467	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	RHOA--CCR1	46	16	RHOA	2179	chr3:49449253:-	CCR1	14825	chr3:46245815:-	ONLY_REF_SPLICE	YES	913	0	0.06	1	0.4311	0.15	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,CCR1->C-C_motif_chemokine_receptor_1,Oncogene{Bushman},chr3:46243200-46249887:-	SKES1_BONE	0.06	1	0.5811	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	SMCO4--EWSR1	23	42	SMCO4	1233	chr11:93276442:-	EWSR1	23737	chr22:29687554:+	ONLY_REF_SPLICE	YES	5	188	0.93	0.26	0.2156	0.3936	SMCO4->chr11:93211638-93276674:-,single-pass_membrane_protein_with_coiled-coil_domains_4,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	SKES1_BONE	0.26	0.93	0.6092	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	ZFAND5--RP11-3L8.3	22	15	ZFAND5	1552	chr9:74979612:-	RP11-3L8.3	15834	chr9:12790764:-	ONLY_REF_SPLICE	YES	31	0	0.54	1	0.2062	0.1406	ZFAND5->chr9:74966341-74980163:-,zinc_finger_AN1-type_containing_5,RP11-3L8.3->chr9:12700100-12814344:-	SKES1_BONE	0.54	1	0.3468	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	PGM5--MUSK	19	4	PGM5	10680	chr9:71007389:+	MUSK	47766	chr9:113562586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1781	0.0375	PGM5->chr9:70943224-71145977:+,phosphoglucomutase_5,MUSK->chr9:113431051-113563859:+,muscle_associated_receptor_tyrosine_kinase	SKES1_BONE	1	1	0.2156	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	EHMT1--RP11-561O23.8	16	6	EHMT1	6348	chr9:140622981:+	RP11-561O23.8	51187	chr9:70843569:+	INCL_NON_REF_SPLICE	YES	59	0	0.27	1	0.15	0.0562	EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,RP11-561O23.8->chr9:70843567-70844228:+	SKES1_BONE	0.27	1	0.2062	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	DIP2B--ASIC1	16	4	DIP2B	1256	chr12:50899023:+	ASIC1	55420	chr12:50470996:+	ONLY_REF_SPLICE	YES	27	18	0.43	0.53	0.15	0.0375	DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B,ASIC1->acid_sensing_ion_channel_subunit_1,chr12:50451331-50477394:+	SKES1_BONE	0.43	0.53	0.1875	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	SMCO4--EWSR1	5	42	SMCO4	1233	chr11:93276442:-	EWSR1	23734	chr22:29687551:+	ONLY_REF_SPLICE	YES	5	197	0.9	0.19	0.0469	0.3936	SMCO4->chr11:93211638-93276674:-,single-pass_membrane_protein_with_coiled-coil_domains_4,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	SKES1_BONE	0.19	0.9	0.4405	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	CDK14--GTPBP10	14	4	CDK14	25131	chr7:90708795:+	GTPBP10	48444	chr7:90003616:+	ONLY_REF_SPLICE	YES	56	91	0.24	0.17	0.1312	0.0375	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_REARRANGEMENT:+:[74969],CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	SKES1_BONE	0.17	0.24	0.1687	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	EHMT1--RP11-561O23.8	14	1	EHMT1	6348	chr9:140622981:+	RP11-561O23.8	51588	chr9:70843970:+	ONLY_REF_SPLICE	YES	59	1	0.2	0.94	0.1312	0.0094	EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,RP11-561O23.8->chr9:70843567-70844228:+	SKES1_BONE	0.2	0.94	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	AKAP2--LPAR1	12	7	AKAP2	8840	chr9:112811135:+	LPAR1	30380	chr9:113735838:-	ONLY_REF_SPLICE	YES	8	0	0.7	1	0.1125	0.0656	AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+,LPAR1->Oncogene{Bushman},chr9:113635543-113800981:-,lysophosphatidic_acid_receptor_1	SKES1_BONE	0.7	1	0.1781	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	ZFAND5--RP11-3L8.3	12	0	ZFAND5	1552	chr9:74979612:-	RP11-3L8.3	16980	chr9:12759623:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1125	0	ZFAND5->chr9:74966341-74980163:-,zinc_finger_AN1-type_containing_5,RP11-3L8.3->chr9:12700100-12814344:-	SKES1_BONE	1	1	0.1125	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	GPR144--SMARCA2	7	2	GPR144	2579	chr9:127215001:+	SMARCA2	41931	chr9:2096657:+	ONLY_REF_SPLICE	YES	1	17	0.9	0.35	0.0656	0.0187	GPR144->chr9:127213423-127239379:+,SMARCA2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_2,chr9:2015342-2193624:+	SKES1_BONE	0.35	0.9	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	RP11-509J21.1--DMRT1	4	9	RP11-509J21.1	5394	chr9:3606738:+	DMRT1	16414	chr9:916763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0.0844	RP11-509J21.1->chr9:3526723-3671646:+,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	SKES1_BONE	1	1	0.1219	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	TRMT10B--GARNL3	6	1	TRMT10B	7345	chr9:37770736:+	GARNL3	19571	chr9:130027231:+	ONLY_REF_SPLICE	YES	5	13	0.58	0.35	0.0562	0.0094	TRMT10B->chr9:37753804-37778969:+,tRNA_methyltransferase_10B,GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+	SKES1_BONE	0.35	0.58	0.0656	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	DFNB31--PGM5-AS1	5	0	DFNB31	2267	chr9:117266464:-	PGM5-AS1	20501	chr9:70970521:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0	DFNB31->chr9:117164360-117267730:-,deafness,_autosomal_recessive_31,PGM5-AS1->PGM5_antisense_RNA_1,chr9:70970105-70972768:-	SKES1_BONE	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	PAQR5--GLCE	5	0	PAQR5	1110	chr15:69591395:+	GLCE	27130	chr15:69553426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKES1_BONE	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	RP11-509J21.1--DMRT1	2	9	RP11-509J21.1	4348	chr9:3602584:+	DMRT1	16414	chr9:916763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0.0844	RP11-509J21.1->chr9:3526723-3671646:+,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	SKES1_BONE	1	1	0.1031	TRUE	0	1	0	1	1	TRUE	ACH-000087
SKES1_BONE	RCC1--HMGB1	4	0	RCC1	2175	chr1:28834672:+	HMGB1	23625	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	SKES1_BONE	1	1	0.0375	TRUE	0	6	0	3	4	TRUE	ACH-000087
SKES1_BONE	RP11-509J21.1--DMRT1	2	5	RP11-509J21.1	2190	chr9:3546912:+	DMRT1	16414	chr9:916763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0.0469	RP11-509J21.1->chr9:3526723-3671646:+,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	SKES1_BONE	1	1	0.0656	TRUE	0	1	0	1	1	TRUE	ACH-000087
SKES1_BONE	RP11-264K23.1--TMEM229A	3	0	RP11-264K23.1	1256	chr7:123927343:-	TMEM229A	6841	chr7:123672333:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	RP11-264K23.1->chr7:123914733-123927598:-,TMEM229A->chr7:123670973-123673523:-,transmembrane_protein_229A	SKES1_BONE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	RP11-264K23.1--TMEM229A	3	0	RP11-264K23.1	1256	chr7:123927343:-	TMEM229A	6441	chr7:123672733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	RP11-264K23.1->chr7:123914733-123927598:-,TMEM229A->chr7:123670973-123673523:-,transmembrane_protein_229A	SKES1_BONE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	AKAP2--LPAR1	1	7	AKAP2	12523	chr9:112890292:+	LPAR1	30380	chr9:113735838:-	ONLY_REF_SPLICE	NO	8	0	0.5	1	0.0094	0.0656	AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+,LPAR1->Oncogene{Bushman},chr9:113635543-113800981:-,lysophosphatidic_acid_receptor_1	SKES1_BONE	0.5	1	0.075	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	RP11-509J21.1--DMRT1	1	7	RP11-509J21.1	3286	chr9:3568889:+	DMRT1	16414	chr9:916763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0656	RP11-509J21.1->chr9:3526723-3671646:+,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	SKES1_BONE	1	1	0.075	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	AKAP2--LPAR1	1	6	AKAP2	8840	chr9:112811135:+	LPAR1	31458	chr9:113734500:-	ONLY_REF_SPLICE	YES	8	8	0.47	0.47	0.0094	0.0562	AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+,LPAR1->Oncogene{Bushman},chr9:113635543-113800981:-,lysophosphatidic_acid_receptor_1	SKES1_BONE	0.47	0.47	0.0656	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	CPSF6--NREP	2	0	CPSF6	11046	chr12:69656342:+	NREP	24401	chr5:111092876:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NREP->chr5:110998318-111333161:-,neuronal_regeneration_related_protein	SKES1_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	CTD-2541M15.1--USP22	2	0	CTD-2541M15.1	1069	chr8:6565662:-	USP22	16287	chr17:20931987:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	CTD-2541M15.1->chr8:6475996-6565730:-,USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22	SKES1_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	NDUFA10--LUC7L2	2	0	NDUFA10	12749	chr2:240929491:-	LUC7L2	40001	chr7:139106909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	SKES1_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	RP11-509J21.2--DMRT1	2	0	RP11-509J21.2	1143	chr9:3647477:+	DMRT1	10528	chr9:916763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	RP11-509J21.2->chr9:3647335-3648338:+,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	SKES1_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	RP11-509J21.1--DMRT1	1	1	RP11-509J21.1	1055	chr9:3526777:+	DMRT1	16414	chr9:916763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0094	RP11-509J21.1->chr9:3526723-3671646:+,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	SKES1_BONE	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000087
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAMSAP2--PTPLAD1	18	8	CAMSAP2	2669	chr1:200730226:+	PTPLAD1	30518	chr15:65844014:+	ONLY_REF_SPLICE	YES	8	56	0.76	0.32	0.294	0.1307	CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,PTPLAD1->chr15:65822756-65870687:+	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.76	0.4247	TRUE	0	0	0	1	0	TRUE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	13	0	IGH@	97640	chr14:106321054:-	TMSB4X	131816	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2123	0	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2123	TRUE	0	0	0	6	0	TRUE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL4A3BP--HMGCR	2	0	COL4A3BP	7481	chr5:74715166:-	HMGCR	43069	chr5:74652168:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_INVERSION:-:+:[6382],COL4A3BP->chr5:74664311-74807963:-,collagen_type_IV_alpha_3_binding_protein,HMGCR->3-hydroxy-3-methylglutaryl-CoA_reductase,Oncogene{Bushman},chr5:74632154-74657929:+	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CREBRF--MIB1	2	0	CREBRF	7949	chr5:172518404:+	MIB1	41752	chr18:19418326:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	CREBRF->CREB3_regulatory_factor,chr5:172483355-172566291:+,MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-977B1.7--TGIF2	1	1	RP5-977B1.7	2583	chr20:35199844:-	TGIF2	17191	chr20:35207144:+	ONLY_REF_SPLICE	YES	4	1	0.33	0.67	0.0163	0.0163	LOCAL_INVERSION:-:+:[97],RP5-977B1.7->chr20:35136563-35201794:-,TGIF2->TGFB_induced_factor_homeobox_2,chr20:35201891-35222353:+	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.67	0.0326	TRUE	0	3	0	3	3	TRUE	ACH-000106
SNU1076_UPPER_AERODIGESTIVE_TRACT	MIR205HG--EML2	4	0	MIR205HG	4006	chr1:209605170:+	EML2	14776	chr19:46142131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,EML2->chr19:46110252-46148887:-,echinoderm_microtubule_associated_protein_like_2	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.037	TRUE	0	0	0	3	0	TRUE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	NDFIP2--CREM	4	0	NDFIP2	1373	chr13:80055659:+	CREM	34070	chr10:35495823:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	NDFIP2->Nedd4_family_interacting_protein_2,chr13:80055287-80130210:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000549
GB1_CENTRAL_NERVOUS_SYSTEM	HNRNPH1--C5orf60	670	340	HNRNPH1	6671	chr5:179047893:-	C5orf60	19554	chr5:179068879:-	ONLY_REF_SPLICE	YES	1150	33	0.47	0.97	9.2663	4.7023	LOCAL_REARRANGEMENT:-:[6760],HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),C5orf60->chr5:179068545-179072047:-,chromosome_5_open_reading_frame_60	GB1_CENTRAL_NERVOUS_SYSTEM	0.47	0.97	13.9686	TRUE	0	0	0	2	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ABCA1--RPS6P12	118	61	ABCA1	6938	chr9:107623960:-	RPS6P12	58355	chr9:85359359:-	INCL_NON_REF_SPLICE	YES	14	0	0.93	1	1.632	0.8436	ABCA1->ATP_binding_cassette_subfamily_A_member_1,Oncogene{Bushman},chr9:107543283-107690518:-,RPS6P12->chr9:85358982-85359707:-,ribosomal_protein_S6_pseudogene_12	GB1_CENTRAL_NERVOUS_SYSTEM	0.93	1	2.4756	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	HNRNPH1--C5orf60	1	351	HNRNPH1	6671	chr5:179047893:-	C5orf60	18943	chr5:179069490:-	ONLY_REF_SPLICE	NO	1150	10	0.23	0.97	0.0138	4.8544	LOCAL_REARRANGEMENT:-:[6760],HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),C5orf60->chr5:179068545-179072047:-,chromosome_5_open_reading_frame_60	GB1_CENTRAL_NERVOUS_SYSTEM	0.23	0.97	4.8682	TRUE	0	0	0	2	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	R3HDM2--OS9	73	26	R3HDM2	2356	chr12:57789532:-	OS9	36037	chr12:58109543:+	ONLY_REF_SPLICE	YES	34	471	0.74	0.17	1.0096	0.3596	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	GB1_CENTRAL_NERVOUS_SYSTEM	0.17	0.74	1.3692	TRUE	0	0	0	3	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ZNF445--SLC45A4	44	17	ZNF445	1080	chr3:44519083:-	SLC45A4	21058	chr8:142264728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6085	0.2351	ZNF445->chr3:44481262-44519162:-,zinc_finger_protein_445,SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.8436	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	HNRNPH1--C5orf60	12	113	HNRNPH1	6321	chr5:179048243:-	C5orf60	19554	chr5:179068879:-	ONLY_REF_SPLICE	YES	1434	33	0.08	0.79	0.166	1.5628	LOCAL_REARRANGEMENT:-:[6760],HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),C5orf60->chr5:179068545-179072047:-,chromosome_5_open_reading_frame_60	GB1_CENTRAL_NERVOUS_SYSTEM	0.08	0.79	1.7288	TRUE	0	0	0	2	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	IAH1--TBC1D16	26	14	IAH1	6108	chr2:9621576:+	TBC1D16	18862	chr17:77987408:-	ONLY_REF_SPLICE	YES	1	2	0.98	0.95	0.3596	0.1936	IAH1->chr2:9613787-9636672:+,isoamyl_acetate-hydrolyzing_esterase_1_homolog,TBC1D16->TBC1_domain_family_member_16,chr17:77906142-78009647:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.95	0.98	0.5532	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	TOP1--EYA2	23	5	TOP1	8178	chr20:39713208:+	EYA2	40028	chr20:45771698:+	ONLY_REF_SPLICE	YES	154	7	0.15	0.8	0.3181	0.0692	TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	GB1_CENTRAL_NERVOUS_SYSTEM	0.15	0.8	0.3873	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ZNFX1--NCOA3	14	21	ZNFX1	2606	chr20:47892316:-	NCOA3	31101	chr20:46250973:+	ONLY_REF_SPLICE	YES	23	29	0.6	0.55	0.1936	0.2904	ZNFX1->chr20:47854483-47894963:-,zinc_finger_NFX1-type_containing_1,NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3	GB1_CENTRAL_NERVOUS_SYSTEM	0.55	0.6	0.484	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	CTNNBL1--ZNF595	11	9	CTNNBL1	18646	chr20:36431450:+	ZNF595	29901	chr4:59323:+	ONLY_REF_SPLICE	YES	196	7	0.09	0.74	0.1521	0.1245	CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	GB1_CENTRAL_NERVOUS_SYSTEM	0.09	0.74	0.2766	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	GPALPP1--NUFIP1	9	5	GPALPP1	10576	chr13:45602138:+	NUFIP1	24230	chr13:45540071:-	ONLY_REF_SPLICE	YES	48	44	0.23	0.24	0.1245	0.0692	LOCAL_INVERSION:+:-:[69],GPALPP1->GPALPP_motifs_containing_1,chr13:45563687-45607746:+,NUFIP1->chr13:45513384-45563618:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_1	GB1_CENTRAL_NERVOUS_SYSTEM	0.23	0.24	0.1937	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	USP15--RP11-767I20.1	7	5	USP15	21571	chr12:62775444:+	RP11-767I20.1	39599	chr12:59150814:-	ONLY_REF_SPLICE	YES	101	0	0.11	1	0.0968	0.0692	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RP11-767I20.1->chr12:58959743-59175529:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.166	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	SEMA4D--CDC14B	7	0	SEMA4D	1212	chr9:92112834:-	CDC14B	49443	chr9:99286007:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0968	0	SEMA4D->Oncogene{Bushman},chr9:91975702-92113045:-,semaphorin_4D,CDC14B->cell_division_cycle_14B,chr9:99252523-99382112:-	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	IAH1--TBC1D16	3	14	IAH1	6108	chr2:9621576:+	TBC1D16	18866	chr17:77987404:-	INCL_NON_REF_SPLICE	YES	1	2	0.94	0.89	0.0415	0.1936	IAH1->chr2:9613787-9636672:+,isoamyl_acetate-hydrolyzing_esterase_1_homolog,TBC1D16->TBC1_domain_family_member_16,chr17:77906142-78009647:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.89	0.94	0.2351	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	PTPRO--RP11-444D3.1	5	5	PTPRO	1405	chr12:15475735:+	RP11-444D3.1	44382	chr12:24430246:-	ONLY_REF_SPLICE	YES	0	4	1	0.71	0.0692	0.0692	PTPRO->chr12:15475331-15750333:+,protein_tyrosine_phosphatase,_receptor_type_O,RP11-444D3.1->chr12:24366190-24715524:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.71	1	0.1384	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	NCOA3--RP5-1121H13.4	5	2	NCOA3	17365	chr20:46271128:+	RP5-1121H13.4	29538	chr20:40619786:+	INCL_NON_REF_SPLICE	YES	22	0	0.24	1	0.0692	0.0277	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,RP5-1121H13.4->chr20:40619780-40692609:+	GB1_CENTRAL_NERVOUS_SYSTEM	0.24	1	0.0969	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	TBL1XR1--RP11-644C3.1	4	3	TBL1XR1	5415	chr3:176816254:-	RP11-644C3.1	34372	chr3:176571556:-	ONLY_REF_SPLICE	YES	35	0	0.17	1	0.0553	0.0415	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-644C3.1->chr3:176361729-176585626:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	SLC1A1--AHNAK2	4	1	SLC1A1	1327	chr9:4490770:+	AHNAK2	21645	chr14:105424009:-	ONLY_REF_SPLICE	YES	2	1	0.71	0.83	0.0553	0.0138	SLC1A1->chr9:4490444-4587469:+,solute_carrier_family_1_member_1,AHNAK2->AHNAK_nucleoprotein_2,chr14:105403581-105444694:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.71	0.83	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RCC1--CTD-2354A18.1	4	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0553	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0553	TRUE	0	1	0	7	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-274B21.1--METTL2B	3	4	RP11-274B21.1	6327	chr7:128220148:+	METTL2B	23404	chr7:128119212:+	ONLY_REF_SPLICE	YES	18	148	0.28	0.05	0.0415	0.0553	LOCAL_REARRANGEMENT:+:[25096],RP11-274B21.1->chr7:128171752-128269512:+,METTL2B->chr7:128116783-128146656:+,methyltransferase_like_2B	GB1_CENTRAL_NERVOUS_SYSTEM	0.05	0.28	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	SLC45A4--RALYL	4	0	SLC45A4	1210	chr8:142318195:-	RALYL	25529	chr8:85441534:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0553	0	SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0553	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ACOT8--CHD6	3	0	ACOT8	6737	chr20:44472902:-	CHD6	44043	chr20:40065974:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0415	0	ACOT8->acyl-CoA_thioesterase_8,chr20:44470360-44486045:-,CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0415	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	IFFO1--RP11-114G22.1	3	0	IFFO1	1817	chr12:6664423:-	RP11-114G22.1	30706	chr12:23206925:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0415	0	IFFO1->chr12:6647541-6665239:-,intermediate_filament_family_orphan_1,RP11-114G22.1->chr12:22852793-23327057:+	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0415	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	USP15--RP11-767I20.1	2	4	USP15	21571	chr12:62775444:+	RP11-767I20.1	40669	chr12:59106134:-	ONLY_REF_SPLICE	YES	101	0	0.06	1	0.0277	0.0553	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RP11-767I20.1->chr12:58959743-59175529:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.083	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ANP32B--NCBP1	2	0	ANP32B	1249	chr9:100745891:+	NCBP1	33828	chr9:100431875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCBP1->chr9:100395908-100436030:+,nuclear_cap_binding_protein_subunit_1	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	COPB2--OPHN1	2	0	COPB2	1185	chr3:139108390:-	OPHN1	30098	chrX:67518938:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,OPHN1->chrX:67262186-67653755:-,oligophrenin_1	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ELF1--LINC00437	2	0	ELF1	1603	chr13:41634974:-	LINC00437	18359	chr13:39108157:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,LINC00437->chr13:39107480-39119436:-,long_intergenic_non-protein_coding_RNA_437	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	EYA3--NRD1	2	0	EYA3	1173	chr1:28415035:-	NRD1	32501	chr1:52306186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,NRD1->chr1:52254863-52344477:-	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ITGB1--WAC	2	0	ITGB1	7027	chr10:33247073:-	WAC	38887	chr10:28872328:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1,WAC->WW_domain_containing_adaptor_with_coiled-coil,chr10:28821422-28912041:+	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	LRIG3--TSFM	2	0	LRIG3	13162	chr12:59274363:-	TSFM	32953	chr12:58196338:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	LRIG3->chr12:59265931-59314303:-,leucine-rich_repeats_and_immunoglobulin_like_domains_3,TSFM->Ts_translation_elongation_factor,_mitochondrial,chr12:58176372-58201854:+	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	STK38--FLOT1	2	0	STK38	1281	chr6:36514967:-	FLOT1	21624	chr6:30708575:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	STK38->chr6:36461669-36515247:-,serine/threonine_kinase_38,FLOT1->chr6:30695486-30710510:-,flotillin_1	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	USP15--RP11-767I20.1	2	0	USP15	21571	chr12:62775444:+	RP11-767I20.1	43032	chr12:59003331:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RP11-767I20.1->chr12:58959743-59175529:-	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
HS888T_FIBROBLAST	ADIRF-AS1--LGALS1	5	1	ADIRF-AS1	3782	chr10:88728287:-	LGALS1	10007	chr22:38071654:+	INCL_NON_REF_SPLICE	YES	30	0	0.17	1	0.0532	0.0106	ADIRF-AS1->ADIRF_antisense_RNA_1,chr10:88725102-88731068:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HS888T_FIBROBLAST	0.17	1	0.0638	TRUE	0	0	0	5	0	TRUE	ACH-000154
HS888T_FIBROBLAST	VIM--FTH1	5	0	VIM	2083	chr10:17271340:+	FTH1	12349	chr11:61734988:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	HS888T_FIBROBLAST	1	1	0.0532	TRUE	0	0	0	6	0	TRUE	ACH-000154
HS888T_FIBROBLAST	FTH1--ACTB	3	0	FTH1	1217	chr11:61734916:-	ACTB	14415	chr7:5567408:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS888T_FIBROBLAST	1	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS888T_FIBROBLAST	1	1	0.0319	TRUE	0	0	0	8	0	TRUE	ACH-000154
HS888T_FIBROBLAST	ANXA1--RBM39	2	0	ANXA1	5083	chr9:75774339:+	RBM39	20574	chr20:34326939:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	HS888T_FIBROBLAST	1	1	0.0213	TRUE	1	0	1	2	0	TRUE	ACH-000154
HS888T_FIBROBLAST	BNC2--MLLT3	2	0	BNC2	1198	chr9:16870644:-	MLLT3	46652	chr9:20354877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	BNC2->basonuclin_2,chr9:16409501-16870841:-,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	ENTPD7--PRKAA1	2	0	ENTPD7	2642	chr10:101421385:+	PRKAA1	21072	chr5:40775605:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	ENTPD7->chr10:101419263-101465997:+,ectonucleoside_triphosphate_diphosphohydrolase_7,PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	FMR1--SMARCA1	2	0	FMR1	1280	chrX:146993748:+	SMARCA1	45383	chrX:128582420:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	FMR1->chrX:146993469-147032645:+,fragile_X_mental_retardation_1,SMARCA1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_1,chrX:128580480-128657477:-	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	PTPRS--ANXA2	2	0	PTPRS	4001	chr19:5286061:-	ANXA2	59056	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	PTPRS->chr19:5158506-5340814:-,protein_tyrosine_phosphatase,_receptor_type_S,ANXA2->annexin_A2,chr15:60639333-60695082:-	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	RPSAP52--FOSL1	2	0	RPSAP52	1132	chr12:66220623:-	FOSL1	7478	chr11:65664477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	RUNX1--ETS2	2	0	RUNX1	21108	chr21:36421139:-	ETS2	47568	chr21:40181959:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,ETS2->ETS_proto-oncogene_2,_transcription_factor,Oncogene{Bushman},chr21:40177231-40196879:+	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	ZNF736--FAM120B	2	0	ZNF736	8361	chr7:63797360:+	FAM120B	32723	chr6:170704575:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lymphoid=1,Lung=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	3	0	3	3	TRUE	ACH-000154
HS839T_FIBROBLAST	COL1A2--COL16A1	1258	0	COL1A2	18296	chr7:94045815:+	COL16A1	71320	chr1:32126239:-	ONLY_REF_SPLICE	YES	0	0	1	1	16.6488	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1	HS839T_FIBROBLAST	1	1	16.6488	TRUE	0	2	0	1	1	TRUE	ACH-000180
HS839T_FIBROBLAST	AL136419.6--PTP4A2	2	0	AL136419.6	3579	chr14:24682615:-	PTP4A2	18746	chr1:32385259:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	AL136419.6->chr14:24678852-24685193:-,PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2	HS839T_FIBROBLAST	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000180
HS839T_FIBROBLAST	VIM-AS1--CYB5R3	1	1	VIM-AS1	1641	chr10:17271344:-	CYB5R3	13663	chr22:43032852:-	ONLY_REF_SPLICE	YES	3	21	0.4	0.09	0.0132	0.0132	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,CYB5R3->chr22:43013846-43045574:-,cytochrome_b5_reductase_3	HS839T_FIBROBLAST	0.09	0.4	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000180
NCIH2126_LUNG	ARPC1B--MYH16	1675	19	ARPC1B	1533	chr7:98972404:+	MYH16	39155	chr7:98877133:+	ONLY_REF_SPLICE	YES	10	2	0.99	1	14.6783	0.1665	LOCAL_REARRANGEMENT:+:[63119],ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	NCIH2126_LUNG	0.99	1	14.8448	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	ARPC1B--MYH16	190	86	ARPC1B	3540	chr7:98975062:+	MYH16	39155	chr7:98877133:+	ONLY_REF_SPLICE	YES	150	2	0.65	0.99	1.665	0.7536	LOCAL_REARRANGEMENT:+:[63119],ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	NCIH2126_LUNG	0.65	0.99	2.4186	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	ARPC1B--MYH16	186	101	ARPC1B	3556	chr7:98975078:+	MYH16	39155	chr7:98877133:+	ONLY_REF_SPLICE	YES	185	2	0.61	0.99	1.6299	0.8851	LOCAL_REARRANGEMENT:+:[63119],ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	NCIH2126_LUNG	0.61	0.99	2.515	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	TBC1D17--PPP6R1	150	37	TBC1D17	8334	chr19:50388015:+	PPP6R1	28586	chr19:55743579:-	ONLY_REF_SPLICE	YES	56	109	0.77	0.63	1.3145	0.3242	{Klijn_CCL:Lung=1},TBC1D17->TBC1_domain_family_member_17,chr19:50380682-50392005:+,PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	NCIH2126_LUNG	0.63	0.77	1.6387	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	NSRP1--ATP5F1	124	20	NSRP1	16221	chr17:28508034:+	ATP5F1	24093	chr1:111996833:+	ONLY_REF_SPLICE	YES	47	492	0.75	0.23	1.0866	0.1753	{Klijn_CCL:Lung=1},NSRP1->chr17:28442539-28513493:+,nuclear_speckle_splicing_regulatory_protein_1,ATP5F1->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_B1,chr1:111991486-112005395:+	NCIH2126_LUNG	0.23	0.75	1.2619	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	LENG8--NLRP2	64	17	LENG8	9419	chr19:54969027:+	NLRP2	25609	chr19:55493530:+	ONLY_REF_SPLICE	YES	274	23	0.23	0.78	0.5608	0.149	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,NLRP2->NLR_family,_pyrin_domain_containing_2,Oncogene{Bushman},chr19:55464498-55512510:+	NCIH2126_LUNG	0.23	0.78	0.7098	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	FAM21B--GPR98	26	10	FAM21B	17409	chr10:47926172:+	GPR98	129307	chr5:90159574:+	ONLY_REF_SPLICE	YES	9	0	0.8	1	0.2278	0.0876	FAM21B->chr10:47894023-47949412:+,GPR98->chr5:89825161-90460038:+	NCIH2126_LUNG	0.8	1	0.3154	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	CDC123--DHTKD1	26	8	CDC123	6086	chr10:12259466:+	DHTKD1	28554	chr10:12148245:+	ONLY_REF_SPLICE	YES	141	55	0.19	0.38	0.2278	0.0701	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},LOCAL_REARRANGEMENT:+:[72740],CDC123->cell_division_cycle_123,chr10:12237964-12292588:+,DHTKD1->chr10:12110971-12165224:+,dehydrogenase_E1_and_transketolase_domain_containing_1	NCIH2126_LUNG	0.19	0.38	0.2979	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	TMEM127--NTNG1	25	9	TMEM127	1857	chr2:96930876:-	NTNG1	20221	chr1:107866904:+	ONLY_REF_SPLICE	YES	33	0	0.51	1	0.2191	0.0789	TMEM127->chr2:96914254-96931732:-,transmembrane_protein_127,NTNG1->chr1:107682629-108026080:+,netrin_G1	NCIH2126_LUNG	0.51	1	0.298	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	GPR98--FAM21B	21	10	GPR98	97413	chr5:90151718:+	FAM21B	127310	chr10:47929795:+	ONLY_REF_SPLICE	YES	0	9	1	0.78	0.184	0.0876	GPR98->chr5:89825161-90460038:+,FAM21B->chr10:47894023-47949412:+	NCIH2126_LUNG	0.78	1	0.2716	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MUC5AC--MUC6	17	2	MUC5AC	6962	chr11:1159069:+	MUC6	40256	chr11:1015883:-	INCL_NON_REF_SPLICE	YES	35	0	0.35	1	0.149	0.0175	HGNC_GENEFAM,PROTCLUST,MUC5AC->Oncogene{Bushman},chr11:1151580-1222364:+,mucin_5AC,_oligomeric_mucus/gel-forming,MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming	NCIH2126_LUNG	0.35	1	0.1665	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	TMEM127--NTNG1	16	6	TMEM127	1126	chr2:96931607:-	NTNG1	20221	chr1:107866904:+	ONLY_REF_SPLICE	YES	51	0	0.3	1	0.1402	0.0526	TMEM127->chr2:96914254-96931732:-,transmembrane_protein_127,NTNG1->chr1:107682629-108026080:+,netrin_G1	NCIH2126_LUNG	0.3	1	0.1928	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	ETFA--BUB1B	13	7	ETFA	10669	chr15:76566753:-	BUB1B	24461	chr15:40457254:+	ONLY_REF_SPLICE	YES	517	77	0.04	0.21	0.1139	0.0613	ETFA->chr15:76507696-76603813:-,electron_transfer_flavoprotein_alpha_subunit,BUB1B->BUB1_mitotic_checkpoint_serine/threonine_kinase_B,Oncogene{Bushman},chr15:40453224-40513337:+	NCIH2126_LUNG	0.04	0.21	0.1752	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	ARPC1B--MYH16	8	25	ARPC1B	2675	chr7:98974197:+	MYH16	39155	chr7:98877133:+	ONLY_REF_SPLICE	YES	69	2	0.32	0.94	0.0701	0.2191	LOCAL_REARRANGEMENT:+:[63119],ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	NCIH2126_LUNG	0.32	0.94	0.2892	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	CDC123--DHTKD1	13	4	CDC123	6086	chr10:12259466:+	DHTKD1	29705	chr10:12149908:+	ONLY_REF_SPLICE	YES	141	67	0.11	0.2	0.1139	0.0351	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},LOCAL_REARRANGEMENT:+:[72740],CDC123->cell_division_cycle_123,chr10:12237964-12292588:+,DHTKD1->chr10:12110971-12165224:+,dehydrogenase_E1_and_transketolase_domain_containing_1	NCIH2126_LUNG	0.11	0.2	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	BMPR2--AC079354.1	12	6	BMPR2	1615	chr2:203242273:+	AC079354.1	48306	chr2:203019396:+	ONLY_REF_SPLICE	YES	16	0	0.53	1	0.1052	0.0526	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,AC079354.1->chr2:202937978-203062585:+	NCIH2126_LUNG	0.53	1	0.1578	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	TBC1D17--PPP6R1	3	39	TBC1D17	9106	chr19:50388787:+	PPP6R1	28586	chr19:55743579:-	INCL_NON_REF_SPLICE	YES	48	109	0.47	0.28	0.0263	0.3418	{Klijn_CCL:Lung=1},TBC1D17->TBC1_domain_family_member_17,chr19:50380682-50392005:+,PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	NCIH2126_LUNG	0.28	0.47	0.3681	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	ARPC1B--MYH16	7	19	ARPC1B	1558	chr7:98972429:+	MYH16	39155	chr7:98877133:+	INCL_NON_REF_SPLICE	YES	45	2	0.37	0.93	0.0613	0.1665	LOCAL_REARRANGEMENT:+:[63119],ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	NCIH2126_LUNG	0.37	0.93	0.2278	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	CDC123--DHTKD1	11	3	CDC123	6086	chr10:12259466:+	DHTKD1	30812	chr10:12154899:+	ONLY_REF_SPLICE	YES	141	58	0.09	0.19	0.0964	0.0263	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},LOCAL_REARRANGEMENT:+:[72740],CDC123->cell_division_cycle_123,chr10:12237964-12292588:+,DHTKD1->chr10:12110971-12165224:+,dehydrogenase_E1_and_transketolase_domain_containing_1	NCIH2126_LUNG	0.09	0.19	0.1227	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	WHSC1L1--FGFR1	9	2	WHSC1L1	5410	chr8:38205015:-	FGFR1	49314	chr8:38315052:-	ONLY_REF_SPLICE	YES	31	1	0.26	0.92	0.0789	0.0175	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},YOSHIHARA_TCGA_num_samples[BRCA:2],LOCAL_REARRANGEMENT:-:[28866],WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-,FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1	NCIH2126_LUNG	0.26	0.92	0.0964	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	FAM21B--GPR98	8	5	FAM21B	16239	chr10:47922366:+	GPR98	129307	chr5:90159574:+	ONLY_REF_SPLICE	YES	15	0	0.46	1	0.0701	0.0438	FAM21B->chr10:47894023-47949412:+,GPR98->chr5:89825161-90460038:+	NCIH2126_LUNG	0.46	1	0.1139	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	TMEM127--NTNG1	8	4	TMEM127	1126	chr2:96931607:-	NTNG1	25073	chr1:107937776:+	ONLY_REF_SPLICE	YES	51	8	0.19	0.6	0.0701	0.0351	TMEM127->chr2:96914254-96931732:-,transmembrane_protein_127,NTNG1->chr1:107682629-108026080:+,netrin_G1	NCIH2126_LUNG	0.19	0.6	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	FOCAD--TOPORS-AS1	6	4	FOCAD	39920	chr9:20929595:+	TOPORS-AS1	65781	chr9:32565395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0.0351	FOCAD->chr9:20658308-20995954:+,focadhesin,TOPORS-AS1->TOPORS_antisense_RNA_1,chr9:32551142-32567003:+	NCIH2126_LUNG	1	1	0.0877	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MGST1--UBB	7	0	MGST1	5873	chr12:16507204:+	UBB	25603	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0613	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,UBB->chr17:16284112-16286059:+,ubiquitin_B	NCIH2126_LUNG	1	1	0.0613	TRUE	0	0	0	2	0	TRUE	ACH-000785
NCIH2126_LUNG	AP3S1--AC010226.4	6	0	AP3S1	1626	chr5:115177803:+	AC010226.4	19657	chr5:114955765:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,AC010226.4->chr5:114937754-114956356:+	NCIH2126_LUNG	1	1	0.0526	TRUE	0	1	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	AP3S1--AC010226.4	5	2	AP3S1	1626	chr5:115177803:+	AC010226.4	17568	chr5:114938743:+	ONLY_REF_SPLICE	YES	97	0	0.07	1	0.0438	0.0175	AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,AC010226.4->chr5:114937754-114956356:+	NCIH2126_LUNG	0.07	1	0.0613	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	ARPC1B--MYH16	5	1	ARPC1B	1330	chr7:98972201:+	MYH16	39155	chr7:98877133:+	ONLY_REF_SPLICE	YES	4	2	0.6	0.75	0.0438	0.0088	LOCAL_REARRANGEMENT:+:[63119],ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	NCIH2126_LUNG	0.6	0.75	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	TBC1D17--PPP6R1	3	6	TBC1D17	8334	chr19:50388015:+	PPP6R1	28815	chr19:55743350:-	ONLY_REF_SPLICE	YES	56	126	0.14	0.07	0.0263	0.0526	{Klijn_CCL:Lung=1},TBC1D17->TBC1_domain_family_member_17,chr19:50380682-50392005:+,PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	NCIH2126_LUNG	0.07	0.14	0.0789	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	WHSC1L1--RP11-675F6.3	4	1	WHSC1L1	5410	chr8:38205015:-	RP11-675F6.3	43482	chr8:38401364:-	ONLY_REF_SPLICE	YES	31	0	0.14	1	0.0351	0.0088	WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-,RP11-675F6.3->chr8:38401170-38410198:-	NCIH2126_LUNG	0.14	1	0.0439	TRUE	0	1	0	1	1	TRUE	ACH-000785
NCIH2126_LUNG	AL589743.1--RP11-536C10.17	3	4	AL589743.1	5091	chr14:19656224:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	227	0	0.03	1	0.0263	0.0351	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH2126_LUNG	0.03	1	0.0614	TRUE	0	4	0	3	4	TRUE	ACH-000785
NCIH2126_LUNG	AP3S1--AC010226.4	4	0	AP3S1	1626	chr5:115177803:+	AC010226.4	18728	chr5:114954836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,AC010226.4->chr5:114937754-114956356:+	NCIH2126_LUNG	1	1	0.0351	TRUE	0	1	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	AP000525.9--LA16c-60G3.6	3	3	AP000525.9	5082	chr22:16186811:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	62	0	0.09	1	0.0263	0.0263	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH2126_LUNG	0.09	1	0.0526	TRUE	0	3	0	6	3	TRUE	ACH-000785
NCIH2126_LUNG	RCOR1--TECPR2	3	1	RCOR1	7307	chr14:103177350:+	TECPR2	21548	chr14:102873675:+	ONLY_REF_SPLICE	YES	77	22	0.05	0.15	0.0263	0.0088	LOCAL_REARRANGEMENT:+:[90180],RCOR1->REST_corepressor_1,chr14:103058998-103196913:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	NCIH2126_LUNG	0.05	0.15	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	AP3S1--AC010226.4	3	0	AP3S1	3132	chr5:115188711:+	AC010226.4	18728	chr5:114954836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,AC010226.4->chr5:114937754-114956356:+	NCIH2126_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	LARP4--RGS6	3	0	LARP4	14445	chr12:50834332:+	RGS6	37621	chr14:72921236:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	NCIH2126_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	SLC7A5--PSCA	3	0	SLC7A5	12676	chr16:87865533:-	PSCA	20605	chr8:143763637:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,PSCA->Oncogene{Bushman},chr8:143751726-143764142:+,prostate_stem_cell_antigen	NCIH2126_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	EHD4--CA12	2	2	EHD4	3595	chr15:42235265:-	CA12	16912	chr15:63667877:-	ONLY_REF_SPLICE	YES	33	2	0.11	0.67	0.0175	0.0175	EHD4->EH_domain_containing_4,chr15:42190950-42264776:-,CA12->carbonic_anhydrase_12,chr15:63613577-63674360:-	NCIH2126_LUNG	0.11	0.67	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	TMEM127--NTNG1	1	6	TMEM127	1857	chr2:96930876:-	NTNG1	25073	chr1:107937776:+	ONLY_REF_SPLICE	YES	33	8	0.17	0.47	0.0088	0.0526	TMEM127->chr2:96914254-96931732:-,transmembrane_protein_127,NTNG1->chr1:107682629-108026080:+,netrin_G1	NCIH2126_LUNG	0.17	0.47	0.0614	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	BAIAP2L2--CSNK1E	2	0	BAIAP2L2	3553	chr22:38503859:-	CSNK1E	18062	chr22:38757565:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	BAIAP2L2->BAI1_associated_protein_2_like_2,chr22:38480896-38506677:-,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	NCIH2126_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	C16orf89--AKAP13	2	0	C16orf89	6037	chr16:5106054:-	AKAP13	35467	chr15:86182605:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	C16orf89->chr16:5094123-5116111:-,chromosome_16_open_reading_frame_89,AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+	NCIH2126_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	CDC123--DHTKD1	2	0	CDC123	6086	chr10:12259466:+	DHTKD1	31977	chr10:12159672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},LOCAL_REARRANGEMENT:+:[72740],CDC123->cell_division_cycle_123,chr10:12237964-12292588:+,DHTKD1->chr10:12110971-12165224:+,dehydrogenase_E1_and_transketolase_domain_containing_1	NCIH2126_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	GPRC5A--CDKN1B	2	0	GPRC5A	4190	chr12:13062105:+	CDKN1B	18277	chr12:12871759:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	GPRC5A->G_protein-coupled_receptor_class_C_group_5_member_A,chr12:13043716-13070871:+,CDKN1B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:12867992-12875305:+,cyclin-dependent_kinase_inhibitor_1B	NCIH2126_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	PTPRA--HP1BP3	2	0	PTPRA	5597	chr20:2928670:+	HP1BP3	31817	chr1:21107033:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	NCIH2126_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	TXNRD1--PRRC2C	2	0	TXNRD1	16815	chr12:104707095:+	PRRC2C	50062	chr1:171504567:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C	NCIH2126_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	WHSC1L1--FGFR1	1	2	WHSC1L1	5410	chr8:38205015:-	FGFR1	47016	chr8:38318773:-	ONLY_REF_SPLICE	YES	31	0	0.09	1	0.0088	0.0175	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},YOSHIHARA_TCGA_num_samples[BRCA:2],LOCAL_REARRANGEMENT:-:[28866],WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-,FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1	NCIH2126_LUNG	0.09	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000785
SCC25_UPPER_AERODIGESTIVE_TRACT	ABCA13--C7orf57	94	74	ABCA13	2189	chr7:48232649:+	C7orf57	91605	chr7:48092297:+	ONLY_REF_SPLICE	YES	18	2	0.9	0.99	1.0951	0.8621	ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+,C7orf57->chr7:48075108-48100901:+,chromosome_7_open_reading_frame_57	SCC25_UPPER_AERODIGESTIVE_TRACT	0.9	0.99	1.9572	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	CTTN--SHANK2	41	15	CTTN	15994	chr11:70275305:+	SHANK2	70347	chr11:70338570:-	ONLY_REF_SPLICE	YES	1355	16	0.04	0.78	0.4776	0.1747	LOCAL_INVERSION:+:-:[31271],CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	SCC25_UPPER_AERODIGESTIVE_TRACT	0.04	0.78	0.6523	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	ABCA13--C7orf57	30	45	ABCA13	2189	chr7:48232649:+	C7orf57	91653	chr7:48092345:+	ONLY_REF_SPLICE	YES	18	4	0.81	0.95	0.3495	0.5242	ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+,C7orf57->chr7:48075108-48100901:+,chromosome_7_open_reading_frame_57	SCC25_UPPER_AERODIGESTIVE_TRACT	0.81	0.95	0.8737	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	DNASE2--MAST1	5	9	DNASE2	1667	chr19:12991616:-	MAST1	26434	chr19:12984138:+	ONLY_REF_SPLICE	YES	234	2	0.06	0.88	0.0582	0.1048	LOCAL_INVERSION:-:+:[260],DNASE2->chr19:12986025-12992282:-,deoxyribonuclease_II,_lysosomal,MAST1->chr19:12944765-12985765:+,microtubule_associated_serine/threonine_kinase_1	SCC25_UPPER_AERODIGESTIVE_TRACT	0.06	0.88	0.163	TRUE	0	1	0	1	1	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	DYSF--ZNF638	5	4	DYSF	12732	chr2:71748034:+	ZNF638	92477	chr2:71631000:+	ONLY_REF_SPLICE	YES	14	36	0.39	0.2	0.0582	0.0466	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[18653],DYSF->chr2:71680852-71913898:+,dysferlin,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	SCC25_UPPER_AERODIGESTIVE_TRACT	0.2	0.39	0.1048	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	XXbac-BPG252P9.9--IFI27	5	0	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0582	TRUE	0	2	0	13	2	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	ILF3-AS1--KRT24	4	1	ILF3-AS1	1126	chr19:10764395:-	KRT24	7656	chr17:38858185:-	INCL_NON_REF_SPLICE	YES	42	0	0.11	1	0.0466	0.0116	ILF3-AS1->ILF3_antisense_RNA_1_(head_to_head),chr19:10762538-10764520:-,KRT24->chr17:38854243-38860002:-,keratin_24	SCC25_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	PABPC1--KRT14	4	0	PABPC1	2002	chr8:101734036:-	KRT14	18384	chr17:39743147:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	GTEx&tcga_normals:1/3694=0.03%,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,KRT14->chr17:39738531-39743173:-,keratin_14	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0466	TRUE	0	0	0	4	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	SMARCA4--BSPH1	3	0	SMARCA4	15302	chr19:11107220:+	BSPH1	51709	chr19:48471466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,BSPH1->binder_of_sperm_protein_homolog_1,chr19:48471303-48495427:-	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RP11-550I24.2--PMEPA1	2	0	RP11-550I24.2	1167	chr3:156893178:+	PMEPA1	17907	chr20:56234753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	RP11-550I24.2->chr3:156893012-157099054:+,PMEPA1->Oncogene{Bushman},chr20:56223448-56286592:-,prostate_transmembrane_protein,_androgen_induced_1	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	STX16--VAPB	2	0	STX16	9005	chr20:57248767:+	VAPB	26345	chr20:57019133:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx&tcga_normals:1/3694=0.03%,STX16->chr20:57226328-57254582:+,syntaxin_16,VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	ZNRD1-AS1--FYN	2	0	ZNRD1-AS1	11211	chr6:29989444:-	FYN	61721	chr6:111983150:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ZNRD1-AS1->chr6:29968788-30029417:-,FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	SYT1--ZDHHC17	1	1	SYT1	11895	chr12:79441142:+	ZDHHC17	33834	chr12:77199097:+	ONLY_REF_SPLICE	NO	5	39	0.29	0.05	0.0116	0.0116	SYT1->chr12:79257773-79845788:+,synaptotagmin_1,ZDHHC17->chr12:77157368-77247476:+,zinc_finger_DHHC-type_containing_17	SCC25_UPPER_AERODIGESTIVE_TRACT	0.05	0.29	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000188
RERFLCMS_LUNG	AP003900.6--AC008132.1	20	6	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.2526	0.0758	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	RERFLCMS_LUNG	0.93	1	0.3284	TRUE	0	0	0	16	0	TRUE	ACH-000062
RERFLCMS_LUNG	MYL9--DLGAP4	9	13	MYL9	2288	chr20:35173471:+	DLGAP4	10495	chr20:35060049:+	ONLY_REF_SPLICE	YES	416	0	0.05	1	0.1137	0.1642	LOCAL_REARRANGEMENT:+:[12847],MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,DLGAP4->chr20:34894258-35157040:+,discs_large_homolog_associated_protein_4	RERFLCMS_LUNG	0.05	1	0.2779	TRUE	0	0	0	1	0	TRUE	ACH-000062
RERFLCMS_LUNG	AP003900.6--AC008132.1	5	4	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	8	0.82	0.53	0.0632	0.0505	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	RERFLCMS_LUNG	0.53	0.82	0.1137	TRUE	0	0	0	13	0	TRUE	ACH-000062
RERFLCMS_LUNG	AP003900.6--AC008132.1	2	13	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0253	0.1642	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	RERFLCMS_LUNG	0.88	1	0.1895	TRUE	0	0	0	12	0	TRUE	ACH-000062
RERFLCMS_LUNG	EPHA2--ANO7P1	4	2	EPHA2	13620	chr1:16455929:-	ANO7P1	20565	chr1:16551984:-	ONLY_REF_SPLICE	YES	122	1	0.05	0.86	0.0505	0.0253	LOCAL_REARRANGEMENT:-:[59822],EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-,ANO7P1->anoctamin_7_pseudogene_1,chr1:16542404-16554522:-	RERFLCMS_LUNG	0.05	0.86	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000062
RERFLCMS_LUNG	MIF--FTL	3	0	MIF	1509	chr22:24236699:+	FTL	5311	chr19:49468644:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	MIF->Oncogene{Bushman},chr22:24236191-24237414:+,macrophage_migration_inhibitory_factor_(glycosylation-inhibiting_factor),FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	RERFLCMS_LUNG	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000062
RERFLCMS_LUNG	AP003900.6--AC008132.1	1	5	AP003900.6	2187	chr21:11172043:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	8	0.75	0.43	0.0126	0.0632	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	RERFLCMS_LUNG	0.43	0.75	0.0758	TRUE	0	0	0	3	0	TRUE	ACH-000062
RERFLCMS_LUNG	AP003900.6--AC008132.1	1	5	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	5	8	0.55	0.43	0.0126	0.0632	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	RERFLCMS_LUNG	0.43	0.55	0.0758	TRUE	0	0	0	13	0	TRUE	ACH-000062
RERFLCMS_LUNG	CLTC--PRKCA	2	0	CLTC	5948	chr17:57728677:+	PRKCA	51727	chr17:64728806:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha	RERFLCMS_LUNG	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000062
RERFLCMS_LUNG	CPSF6--NR0B1	2	0	CPSF6	11046	chr12:69656342:+	NR0B1	23329	chrX:30322940:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	RERFLCMS_LUNG	1	1	0.0253	TRUE	0	1	0	8	0	TRUE	ACH-000062
RERFLCMS_LUNG	NUPL2--NPSR1-AS1	2	0	NUPL2	2892	chr7:23224917:+	NPSR1-AS1	20186	chr7:34768428:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,NPSR1-AS1->NPSR1_antisense_RNA_1,chr7:34386124-34911194:-	RERFLCMS_LUNG	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000062
MON_SOFT_TISSUE	PLK3--KIF2C	12	7	PLK3	1723	chr1:45266619:+	KIF2C	12947	chr1:45213056:+	ONLY_REF_SPLICE	YES	27	225	0.41	0.08	0.2358	0.1375	LOCAL_REARRANGEMENT:+:[32458],PLK3->chr1:45265897-45271662:+,polo_like_kinase_3,KIF2C->chr1:45205490-45233439:+,kinesin_family_member_2C	MON_SOFT_TISSUE	0.08	0.41	0.3733	TRUE	0	0	0	1	0	TRUE	ACH-001128
MON_SOFT_TISSUE	CNOT3--CACNG8	4	4	CNOT3	4077	chr19:54646922:+	CACNG8	18794	chr19:54481400:+	ONLY_REF_SPLICE	YES	61	39	0.12	0.17	0.0786	0.0786	CNOT3->CCR4-NOT_transcription_complex_subunit_3,chr19:54641444-54659419:+,CACNG8->calcium_voltage-gated_channel_auxiliary_subunit_gamma_8,chr19:54466294-54493469:+	MON_SOFT_TISSUE	0.12	0.17	0.1572	TRUE	0	0	0	1	0	TRUE	ACH-001128
MON_SOFT_TISSUE	MIR302B--GNAS	2	0	MIR302B	2110	chr4:113569810:-	GNAS	23108	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0	MIR302B->chr4:113567632-113571207:-,microRNA_302b,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MON_SOFT_TISSUE	1	1	0.0393	TRUE	0	27	0	1	20	TRUE	ACH-001128
MON_SOFT_TISSUE	MRPS28--SLC41A3	2	0	MRPS28	1254	chr8:80942271:-	SLC41A3	25965	chr3:125735718:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0	MRPS28->chr8:80830952-80942524:-,mitochondrial_ribosomal_protein_S28,SLC41A3->chr3:125725198-125820404:-,solute_carrier_family_41_member_3	MON_SOFT_TISSUE	1	1	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-001128
MON_SOFT_TISSUE	MYO19--SERPINB6	2	0	MYO19	9246	chr17:34881059:-	SERPINB6	41391	chr6:2949303:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0	MYO19->chr17:34851477-34899284:-,myosin_XIX,SERPINB6->chr6:2948393-2972090:-,serpin_family_B_member_6	MON_SOFT_TISSUE	1	1	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-001128
MON_SOFT_TISSUE	RCC1--PRKDC	2	0	RCC1	2920	chr1:28835417:+	PRKDC	20947	chr8:48869991:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide	MON_SOFT_TISSUE	1	1	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-001128
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTSC--RPL13A	6	0	CTSC	19843	chr11:88027207:-	RPL13A	26005	chr19:49994730:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	CTSC->cathepsin_C,chr11:88026760-88070955:-,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0657	TRUE	0	0	0	2	0	TRUE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL3--EEF2	3	0	RPL3	3820	chr22:39713575:-	EEF2	16810	chr19:3980016:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx&tcga_normals:6/3694=0.16%,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	0	0	0	3	0	TRUE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0219	TRUE	1	3	0	10	0	TRUE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GEMIN6--SOS1	2	0	GEMIN6	4383	chr2:39006260:+	SOS1	20941	chr2:39262641:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GEMIN6->chr2:38978676-39012142:+,gem_nuclear_organelle_associated_protein_6,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKAG1--C12orf54	2	0	PRKAG1	4640	chr12:49406845:-	C12orf54	19748	chr12:48884595:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	PRKAG1->chr12:49396057-49412980:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_1,C12orf54->chr12:48876286-48890295:+,chromosome_12_open_reading_frame_54	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNASEH2B--ELF1	2	0	RNASEH2B	1463	chr13:51484276:+	ELF1	23054	chr13:41533152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	RNASEH2B->chr13:51483814-51544592:+,ribonuclease_H2_subunit_B,ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL22--PER1	2	0	RPL22	8153	chr1:6252990:-	PER1	18522	chr17:8054163:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,PER1->Oncogene{Bushman},chr17:8043790-8059824:-,period_circadian_clock_1	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000829
MKN1_STOMACH	CECR7--AC008132.1	177	12	CECR7	1775	chr22:17518234:+	AC008132.1	13601	chr22:18723545:+	ONLY_REF_SPLICE	YES	5	0	0.97	1	1.7147	0.1163	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	MKN1_STOMACH	0.97	1	1.831	TRUE	0	0	0	5	0	TRUE	ACH-000351
MKN1_STOMACH	TUBA1C--WNT1	136	6	TUBA1C	7646	chr12:49658967:+	WNT1	16267	chr12:49374207:+	ONLY_REF_SPLICE	YES	22	10	0.87	0.93	1.3175	0.0581	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,WNT1->Oncogene{Bushman},Wnt_family_member_1,chr12:49372398-49375459:+	MKN1_STOMACH	0.87	0.93	1.3756	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	UBE2V2--PRKAA1	87	0	UBE2V2	1071	chr8:48921030:+	PRKAA1	20809	chr5:40769605:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8428	0	{Klijn_CCL:Stomach=1},UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2,PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1	MKN1_STOMACH	1	1	0.8428	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	PARVA--USP47	80	23	PARVA	1599	chr11:12399330:+	USP47	46615	chr11:11963882:+	ONLY_REF_SPLICE	YES	132	31	0.44	0.77	0.775	0.2228	PARVA->chr11:12398732-12552348:+,parvin_alpha,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	MKN1_STOMACH	0.44	0.77	0.9978	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	AGO3--FLYWCH1	47	24	AGO3	1728	chr1:36397046:+	FLYWCH1	48577	chr16:2979614:+	ONLY_REF_SPLICE	YES	27	48	0.72	0.6	0.4553	0.2325	AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,FLYWCH1->FLYWCH-type_zinc_finger_1,chr16:2961938-3001209:+	MKN1_STOMACH	0.6	0.72	0.6878	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	COX8A--NAA40	45	30	COX8A	1188	chr11:63742266:+	NAA40	9338	chr11:63719710:+	ONLY_REF_SPLICE	YES	1305	73	0.05	0.51	0.4359	0.2906	LOCAL_REARRANGEMENT:+:[17279],COX8A->chr11:63742079-63744015:+,cytochrome_c_oxidase_subunit_8A,NAA40->N(alpha)-acetyltransferase_40,_NatD_catalytic_subunit,chr11:63706431-63724800:+	MKN1_STOMACH	0.05	0.51	0.7265	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	TMEM259--LSM7	46	12	TMEM259	3774	chr19:1014191:-	LSM7	15920	chr19:2321821:-	ONLY_REF_SPLICE	YES	133	202	0.3	0.22	0.4456	0.1163	TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259,LSM7->LSM7_homolog,_U6_small_nuclear_RNA_and_mRNA_degradation_associated,chr19:2321516-2328619:-	MKN1_STOMACH	0.22	0.3	0.5619	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	SLC27A4--STXBP1	46	8	SLC27A4	9826	chr9:131118075:+	STXBP1	17176	chr9:130413882:+	ONLY_REF_SPLICE	YES	32	94	0.63	0.36	0.4456	0.0775	{Klijn_CCL:Stomach=1},SLC27A4->chr9:131102925-131123749:+,solute_carrier_family_27_member_4,STXBP1->chr9:130374544-130457460:+,syntaxin_binding_protein_1	MKN1_STOMACH	0.36	0.63	0.5231	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	UBE2V2--PRKAA1	45	0	UBE2V2	1071	chr8:48921030:+	PRKAA1	22622	chr5:40767792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4359	0	{Klijn_CCL:Stomach=1},UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2,PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1	MKN1_STOMACH	1	1	0.4359	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	AC004980.7--SRRM3	35	18	AC004980.7	2605	chr7:76180839:+	SRRM3	12327	chr7:75864346:+	ONLY_REF_SPLICE	YES	7	0	0.88	1	0.3391	0.1744	AC004980.7->chr7:76178677-76257299:+,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	MKN1_STOMACH	0.88	1	0.5135	TRUE	0	2	0	2	2	TRUE	ACH-000351
MKN1_STOMACH	RHPN2--ZNF507	31	9	RHPN2	2221	chr19:33535155:-	ZNF507	24307	chr19:32843735:+	ONLY_REF_SPLICE	YES	191	93	0.17	0.3	0.3003	0.0872	RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,ZNF507->chr19:32836500-32878573:+,zinc_finger_protein_507	MKN1_STOMACH	0.17	0.3	0.3875	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	EML4--MTA3	28	10	EML4	8303	chr2:42491871:+	MTA3	62068	chr2:42980514:+	ONLY_REF_SPLICE	YES	45	0	0.46	1	0.2713	0.0969	EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	MKN1_STOMACH	0.46	1	0.3682	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	PPL--C16orf89	25	4	PPL	4585	chr16:4953887:-	C16orf89	31337	chr16:5106189:-	ONLY_REF_SPLICE	YES	46	0	0.39	1	0.2422	0.0388	LOCAL_REARRANGEMENT:-:[83381],PPL->chr16:4932508-5010742:-,periplakin,C16orf89->chr16:5094123-5116111:-,chromosome_16_open_reading_frame_89	MKN1_STOMACH	0.39	1	0.281	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	USP32--GGA3	22	6	USP32	4918	chr17:58422842:-	GGA3	48993	chr17:73242877:-	ONLY_REF_SPLICE	YES	22	3	0.56	0.9	0.2131	0.0581	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3	MKN1_STOMACH	0.56	0.9	0.2712	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	ESRRA--DNAJC4	16	17	ESRRA	5127	chr11:64082432:+	DNAJC4	12106	chr11:63999945:+	INCL_NON_REF_SPLICE	YES	190	28	0.15	0.54	0.155	0.1647	LOCAL_REARRANGEMENT:+:[71286],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,DNAJC4->DnaJ_heat_shock_protein_family_(Hsp40)_member_C4,chr11:63997750-64001758:+	MKN1_STOMACH	0.15	0.54	0.3197	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	TUBA1C--WNT1	17	7	TUBA1C	7646	chr12:49658967:+	WNT1	15311	chr12:49373251:+	ONLY_REF_SPLICE	YES	22	5	0.52	0.83	0.1647	0.0678	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,WNT1->Oncogene{Bushman},Wnt_family_member_1,chr12:49372398-49375459:+	MKN1_STOMACH	0.52	0.83	0.2325	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	CECR7--AC008132.1	15	6	CECR7	1775	chr22:17518234:+	AC008132.1	15153	chr22:18727043:+	ONLY_REF_SPLICE	YES	5	0	0.81	1	0.1453	0.0581	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	MKN1_STOMACH	0.81	1	0.2034	TRUE	0	0	0	5	0	TRUE	ACH-000351
MKN1_STOMACH	TNIK--EIF5A2	15	3	TNIK	1402	chr3:171177796:-	EIF5A2	47772	chr3:170612212:-	ONLY_REF_SPLICE	YES	11	33	0.62	0.35	0.1453	0.0291	TNIK->TRAF2_and_NCK_interacting_kinase,chr3:170779128-171178197:-,EIF5A2->chr3:170606204-170626482:-,eukaryotic_translation_initiation_factor_5A2	MKN1_STOMACH	0.35	0.62	0.1744	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	UBE2Q1--ASH1L	15	3	UBE2Q1	1802	chr1:154530703:-	ASH1L	25086	chr1:155385714:-	ONLY_REF_SPLICE	YES	82	22	0.18	0.45	0.1453	0.0291	UBE2Q1->chr1:154521053-154531504:-,ubiquitin_conjugating_enzyme_E2_Q1,ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-	MKN1_STOMACH	0.18	0.45	0.1744	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	KMT2C--CTBP2P1	13	3	KMT2C	8616	chr7:151970790:-	CTBP2P1	74892	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	18	0	0.47	1	0.1259	0.0291	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	MKN1_STOMACH	0.47	1	0.155	TRUE	0	1	0	4	1	TRUE	ACH-000351
MKN1_STOMACH	CECR7--AC008132.1	13	2	CECR7	1775	chr22:17518234:+	AC008132.1	16240	chr22:18732023:+	ONLY_REF_SPLICE	YES	5	9	0.75	0.62	0.1259	0.0194	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	MKN1_STOMACH	0.62	0.75	0.1453	TRUE	0	0	0	5	0	TRUE	ACH-000351
MKN1_STOMACH	RP11-384J4.2--NOVA1-AS1	11	7	RP11-384J4.2	2280	chr14:27312862:+	NOVA1-AS1	18103	chr14:27249001:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1066	0.0678	LOCAL_REARRANGEMENT:+:[30261],RP11-384J4.2->chr14:27305934-27629626:+,NOVA1-AS1->NOVA1_antisense_RNA_1_(head_to_head),chr14:27067618-27275673:+	MKN1_STOMACH	1	1	0.1744	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	ARHGAP39--BOP1	11	5	ARHGAP39	2406	chr8:145830920:-	BOP1	20759	chr8:145512985:-	ONLY_REF_SPLICE	YES	19	61	0.46	0.21	0.1066	0.0484	ARHGAP39->Rho_GTPase_activating_protein_39,chr8:145754563-145911194:-,BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-	MKN1_STOMACH	0.21	0.46	0.155	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	LSM14A--SCGB1B2P	11	3	LSM14A	6089	chr19:34699956:+	SCGB1B2P	17898	chr19:35068361:-	ONLY_REF_SPLICE	YES	318	3	0.04	0.82	0.1066	0.0291	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,SCGB1B2P->chr19:35067638-35068606:-,secretoglobin_family_1B_member_2,_pseudogene	MKN1_STOMACH	0.04	0.82	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	ARHGAP10--TMEM184C	10	4	ARHGAP10	1393	chr4:148653606:+	TMEM184C	37262	chr4:148544985:+	ONLY_REF_SPLICE	YES	5	58	0.74	0.19	0.0969	0.0388	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:+:[60019],ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,TMEM184C->chr4:148538534-148593195:+,transmembrane_protein_184C	MKN1_STOMACH	0.19	0.74	0.1357	TRUE	0	1	0	2	1	TRUE	ACH-000351
MKN1_STOMACH	TBC1D32--PRCP	11	0	TBC1D32	27616	chr6:121484116:-	PRCP	54797	chr11:82564320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1066	0	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,PRCP->chr11:82534544-82681626:-,prolylcarboxypeptidase	MKN1_STOMACH	1	1	0.1066	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RETSAT--C2orf68	10	2	RETSAT	6143	chr2:85573098:-	C2orf68	13311	chr2:85838909:-	ONLY_REF_SPLICE	YES	91	46	0.12	0.21	0.0969	0.0194	RETSAT->chr2:85569211-85581743:-,retinol_saturase_(all-trans-retinol_13,14-reductase),C2orf68->chr2:85833777-85839189:-,chromosome_2_open_reading_frame_68	MKN1_STOMACH	0.12	0.21	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	NSD1--ZNF346	7	6	NSD1	25975	chr5:176694719:+	ZNF346	49683	chr5:176477704:+	ONLY_REF_SPLICE	YES	28	35	0.32	0.27	0.0678	0.0581	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[51836],NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	MKN1_STOMACH	0.27	0.32	0.1259	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RHPN2--ZNF507	6	10	RHPN2	2221	chr19:33535155:-	ZNF507	23213	chr19:32838151:+	ONLY_REF_SPLICE	YES	191	55	0.08	0.23	0.0581	0.0969	RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,ZNF507->chr19:32836500-32878573:+,zinc_finger_protein_507	MKN1_STOMACH	0.08	0.23	0.155	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RETSAT--C2orf68	8	1	RETSAT	6143	chr2:85573098:-	C2orf68	15511	chr2:85836709:-	ONLY_REF_SPLICE	YES	91	54	0.09	0.14	0.0775	0.0097	RETSAT->chr2:85569211-85581743:-,retinol_saturase_(all-trans-retinol_13,14-reductase),C2orf68->chr2:85833777-85839189:-,chromosome_2_open_reading_frame_68	MKN1_STOMACH	0.09	0.14	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	PSMD11--RHBDL3	7	4	PSMD11	3734	chr17:30774064:+	RHBDL3	23126	chr17:30611678:+	ONLY_REF_SPLICE	YES	103	2	0.1	0.85	0.0678	0.0388	PSMD11->chr17:30771279-30810336:+,proteasome_26S_subunit,_non-ATPase_11,RHBDL3->chr17:30593195-30651680:+,rhomboid,_veinlet-like_3_(Drosophila)	MKN1_STOMACH	0.1	0.85	0.1066	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	GLB1--SUSD5	7	3	GLB1	5569	chr3:33109722:-	SUSD5	32166	chr3:33216566:-	ONLY_REF_SPLICE	YES	66	4	0.13	0.71	0.0678	0.0291	LOCAL_REARRANGEMENT:-:[52815],GLB1->Oncogene{Bushman},chr3:33038100-33138722:-,galactosidase_beta_1,SUSD5->chr3:33191537-33260707:-,sushi_domain_containing_5	MKN1_STOMACH	0.13	0.71	0.0969	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RP11-384J4.2--NOVA1-AS1	6	6	RP11-384J4.2	2280	chr14:27312862:+	NOVA1-AS1	20652	chr14:27267120:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0581	0.0581	LOCAL_REARRANGEMENT:+:[30261],RP11-384J4.2->chr14:27305934-27629626:+,NOVA1-AS1->NOVA1_antisense_RNA_1_(head_to_head),chr14:27067618-27275673:+	MKN1_STOMACH	1	1	0.1162	TRUE	0	0	0	2	0	TRUE	ACH-000351
MKN1_STOMACH	NSD1--ZNF346	6	3	NSD1	25975	chr5:176694719:+	ZNF346	50917	chr5:176489059:+	ONLY_REF_SPLICE	YES	28	36	0.24	0.2	0.0581	0.0291	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[51836],NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	MKN1_STOMACH	0.2	0.24	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	AC004980.7--SRRM3	5	5	AC004980.7	1502	chr7:76179178:+	SRRM3	12327	chr7:75864346:+	ONLY_REF_SPLICE	YES	14	0	0.42	1	0.0484	0.0484	AC004980.7->chr7:76178677-76257299:+,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	MKN1_STOMACH	0.42	1	0.0968	TRUE	0	2	0	1	2	TRUE	ACH-000351
MKN1_STOMACH	NSD1--ZNF346	5	5	NSD1	25975	chr5:176694719:+	ZNF346	49731	chr5:176477752:+	ONLY_REF_SPLICE	YES	28	34	0.26	0.23	0.0484	0.0484	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[51836],NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	MKN1_STOMACH	0.23	0.26	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	CECR7--AC008132.1	4	6	CECR7	1775	chr22:17518234:+	AC008132.1	14128	chr22:18724072:+	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0388	0.0581	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	MKN1_STOMACH	0.67	1	0.0969	TRUE	0	0	0	5	0	TRUE	ACH-000351
MKN1_STOMACH	MSL2--STAG1	5	1	MSL2	2092	chr3:135914992:-	STAG1	37763	chr3:136117671:-	ONLY_REF_SPLICE	YES	0	28	1	0.18	0.0484	0.0097	YOSHIHARA_TCGA_num_samples[BRCA:1|OV:1],MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila),STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1	MKN1_STOMACH	0.18	1	0.0581	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	ARHGAP39--BOP1	4	2	ARHGAP39	2406	chr8:145830920:-	BOP1	23220	chr8:145500292:-	ONLY_REF_SPLICE	YES	19	131	0.24	0.04	0.0388	0.0194	ARHGAP39->Rho_GTPase_activating_protein_39,chr8:145754563-145911194:-,BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-	MKN1_STOMACH	0.04	0.24	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	USP32--GGA3	3	6	USP32	4918	chr17:58422842:-	GGA3	47824	chr17:73245089:-	ONLY_REF_SPLICE	YES	22	1	0.29	0.9	0.0291	0.0581	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3	MKN1_STOMACH	0.29	0.9	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	PIP5K1C--ZFR2	4	1	PIP5K1C	5344	chr19:3660964:-	ZFR2	51442	chr19:3805334:-	INCL_NON_REF_SPLICE	YES	37	0	0.12	1	0.0388	0.0097	PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma,ZFR2->chr19:3804022-3869030:-,zinc_finger_RNA_binding_protein_2	MKN1_STOMACH	0.12	1	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RHBDD1--IRS1	4	1	RHBDD1	7125	chr2:227732034:+	IRS1	28722	chr2:227600966:-	ONLY_REF_SPLICE	YES	13	12	0.28	0.29	0.0388	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Thyroid=1},LOCAL_INVERSION:+:-:[35822],RHBDD1->chr2:227700297-227863931:+,rhomboid_domain_containing_1,IRS1->chr2:227596033-227664475:-,insulin_receptor_substrate_1	MKN1_STOMACH	0.28	0.29	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	AGO3--FLYWCH1	4	0	AGO3	1097	chr1:36396415:+	FLYWCH1	48577	chr16:2979614:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,FLYWCH1->FLYWCH-type_zinc_finger_1,chr16:2961938-3001209:+	MKN1_STOMACH	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	CPNE1--RBM39	4	0	CPNE1	3826	chr20:34243124:-	RBM39	22004	chr20:34320057:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[38653],CPNE1->chr20:34213953-34252878:-,copine_1,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	MKN1_STOMACH	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	PSMD11--RHBDL3	3	1	PSMD11	3734	chr17:30774064:+	RHBDL3	24845	chr17:30615811:+	ONLY_REF_SPLICE	YES	103	3	0.04	0.57	0.0291	0.0097	PSMD11->chr17:30771279-30810336:+,proteasome_26S_subunit,_non-ATPase_11,RHBDL3->chr17:30593195-30651680:+,rhomboid,_veinlet-like_3_(Drosophila)	MKN1_STOMACH	0.04	0.57	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	LRCH3--SENP5	3	0	LRCH3	20875	chr3:197593090:+	SENP5	38046	chr3:196612022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	LRCH3->chr3:197518097-197615307:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_3,SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+	MKN1_STOMACH	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	PAWR--AP000695.6	3	0	PAWR	2369	chr12:80083509:-	AP000695.6	28782	chr21:37852529:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,AP000695.6->chr21:37802658-37853368:+	MKN1_STOMACH	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	PSMD11--RHBDL3	3	0	PSMD11	3734	chr17:30774064:+	RHBDL3	26070	chr17:30621313:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	PSMD11->chr17:30771279-30810336:+,proteasome_26S_subunit,_non-ATPase_11,RHBDL3->chr17:30593195-30651680:+,rhomboid,_veinlet-like_3_(Drosophila)	MKN1_STOMACH	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RP11-305B6.3--RP11-99L13.1	3	0	RP11-305B6.3	1069	chr14:44853680:-	RP11-99L13.1	10857	chr14:44914025:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	LOCAL_REARRANGEMENT:-:[60202],RP11-305B6.3->chr14:44464984-44853748:-,RP11-99L13.1->chr14:44913950-44949821:-	MKN1_STOMACH	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RP11-384J4.2--NOVA1-AS1	2	2	RP11-384J4.2	2280	chr14:27312862:+	NOVA1-AS1	21769	chr14:27275442:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0194	0.0194	LOCAL_REARRANGEMENT:+:[30261],RP11-384J4.2->chr14:27305934-27629626:+,NOVA1-AS1->NOVA1_antisense_RNA_1_(head_to_head),chr14:27067618-27275673:+	MKN1_STOMACH	0.8	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	ASH1L--GON4L	2	1	ASH1L	1655	chr1:155531944:-	GON4L	52886	chr1:155774932:-	ONLY_REF_SPLICE	YES	10	22	0.23	0.12	0.0194	0.0097	ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,GON4L->chr1:155719508-155829191:-,gon-4_like	MKN1_STOMACH	0.12	0.23	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	CEP152--SHC4	2	1	CEP152	20434	chr15:49052332:-	SHC4	38526	chr15:49217146:-	ONLY_REF_SPLICE	YES	14	0	0.18	1	0.0194	0.0097	LOCAL_REARRANGEMENT:-:[12589],CEP152->centrosomal_protein_152,chr15:49005125-49103343:-,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	MKN1_STOMACH	0.18	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	EML4--MTA3	2	1	EML4	4755	chr2:42483770:+	MTA3	62068	chr2:42980514:+	ONLY_REF_SPLICE	YES	52	0	0.05	1	0.0194	0.0097	EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	MKN1_STOMACH	0.05	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	AGO3--FLYWCH1	2	0	AGO3	1081	chr1:36396399:+	FLYWCH1	48577	chr16:2979614:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,FLYWCH1->FLYWCH-type_zinc_finger_1,chr16:2961938-3001209:+	MKN1_STOMACH	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	ATL2--HNRNPLL	2	0	ATL2	1143	chr2:38604285:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	MKN1_STOMACH	1	1	0.0194	TRUE	1	4	0	6	0	TRUE	ACH-000351
MKN1_STOMACH	ATL2--HNRNPLL	2	0	ATL2	1143	chr2:38604285:-	HNRNPLL	26994	chr2:38813023:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	MKN1_STOMACH	1	1	0.0194	TRUE	0	1	0	4	0	TRUE	ACH-000351
MKN1_STOMACH	FAM69A--SLC1A3	2	0	FAM69A	1125	chr1:93426933:-	SLC1A3	18494	chr5:36671131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	FAM69A->chr1:93307724-93427057:-,family_with_sequence_similarity_69_member_A,SLC1A3->chr5:36606457-36688436:+,solute_carrier_family_1_member_3	MKN1_STOMACH	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	PAWR--PCP4	2	0	PAWR	2369	chr12:80083509:-	PCP4	30103	chr21:41270401:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,PCP4->Purkinje_cell_protein_4,chr21:41239243-41301322:+	MKN1_STOMACH	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	MKN1_STOMACH	1	1	0.0194	TRUE	0	1	0	17	0	TRUE	ACH-000351
MKN1_STOMACH	STARD9--GANC	2	0	STARD9	3291	chr15:42877835:+	GANC	54702	chr15:42584933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	STARD9->StAR_related_lipid_transfer_domain_containing_9,chr15:42867857-43013179:+,GANC->chr15:42565431-42645864:+,glucosidase_alpha,_neutral_C	MKN1_STOMACH	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	ZBTB43--MVB12B	2	0	ZBTB43	1127	chr9:129567411:+	MVB12B	29258	chr9:129265456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	ZBTB43->chr9:129567285-129600489:+,zinc_finger_and_BTB_domain_containing_43,MVB12B->chr9:129089128-129269320:+,multivesicular_body_subunit_12B	MKN1_STOMACH	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	STK24--DOCK9	1	1	STK24	2156	chr13:99228999:-	DOCK9	72398	chr13:99462545:-	ONLY_REF_SPLICE	YES	13	21	0.13	0.09	0.0097	0.0097	STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24,DOCK9->chr13:99445741-99738879:-,dedicator_of_cytokinesis_9	MKN1_STOMACH	0.09	0.13	0.0194	TRUE	0	1	0	2	1	TRUE	ACH-000351
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF208--AP001172.2	438	237	ZNF208	1158	chr19:22193594:-	AP001172.2	20035	chr21:17664469:-	ONLY_REF_SPLICE	YES	7	0	0.99	1	4.8513	2.625	ZNF208->chr19:22115760-22193751:-,zinc_finger_protein_208,AP001172.2->chr21:17664112-17680454:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	7.4763	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKCSH--CD74	255	0	PRKCSH	4974	chr19:11552172:+	CD74	15885	chr5:149792292:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.8244	0	PRKCSH->chr19:11546109-11561783:+,protein_kinase_C_substrate_80K-H,CD74->CD74_molecule,Oncogene{Bushman},chr5:149781200-149792492:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.8244	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF208--AP001172.2	43	245	ZNF208	2252	chr19:22192290:-	AP001172.2	20035	chr21:17664469:-	ONLY_REF_SPLICE	YES	2	0	0.99	1	0.4763	2.7137	ZNF208->chr19:22115760-22193751:-,zinc_finger_protein_208,AP001172.2->chr21:17664112-17680454:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	3.19	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS3--SEPT12	68	41	ANKS3	3685	chr16:4779981:-	SEPT12	26798	chr16:4829787:-	ONLY_REF_SPLICE	YES	50	2	0.69	0.98	0.7532	0.4541	LOCAL_REARRANGEMENT:-:[43291],ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,SEPT12->chr16:4827670-4838522:-,septin_12	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.98	1.2073	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF625--LINC00478	67	38	ZNF625	2584	chr19:12258210:-	LINC00478	12553	chr21:17553911:+	ONLY_REF_SPLICE	YES	11	0	0.91	1	0.7421	0.4209	ZNF625->chr19:12251032-12267546:-,zinc_finger_protein_625,LINC00478->chr21:17442842-17999716:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	1.163	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00478--PTBP1	28	54	LINC00478	5289	chr21:17603435:+	PTBP1	28736	chr19:803561:+	ONLY_REF_SPLICE	YES	11	237	0.88	0.26	0.3101	0.5981	LINC00478->chr21:17442842-17999716:+,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.88	0.9082	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS3--SEPT12	9	43	ANKS3	3685	chr16:4779981:-	SEPT12	25557	chr16:4833558:-	ONLY_REF_SPLICE	YES	50	2	0.51	0.96	0.0997	0.4763	LOCAL_REARRANGEMENT:-:[43291],ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,SEPT12->chr16:4827670-4838522:-,septin_12	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.96	0.576	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PTCD3	19	0	C17orf76-AS1	3754	chr17:16344889:+	PTCD3	29917	chr2:86359744:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2104	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2104	TRUE	0	0	0	4	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK8--RP11-509J21.1	15	7	DOCK8	30390	chr9:371566:+	RP11-509J21.1	75562	chr9:3671474:+	ONLY_REF_SPLICE	YES	59	14	0.27	0.61	0.1661	0.0775	DOCK8->chr9:214854-465259:+,dedicator_of_cytokinesis_8,RP11-509J21.1->chr9:3526723-3671646:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.61	0.2436	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK8--RP11-509J21.2	16	3	DOCK8	30390	chr9:371566:+	RP11-509J21.2	68848	chr9:3647338:+	INCL_NON_REF_SPLICE	YES	59	0	0.24	1	0.1772	0.0332	DOCK8->chr9:214854-465259:+,dedicator_of_cytokinesis_8,RP11-509J21.2->chr9:3647335-3648338:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.2104	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAC2--MIR1302-10	16	3	UBAC2	1166	chr13:99853193:+	MIR1302-10	22407	chr15:102500185:-	ONLY_REF_SPLICE	YES	11	1	0.63	0.95	0.1772	0.0332	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,MIR1302-10->chr15:102500051-102501611:-,microRNA_1302-10	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.95	0.2104	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00478--PTBP1	11	22	LINC00478	5289	chr21:17603435:+	PTBP1	31583	chr19:806408:+	ONLY_REF_SPLICE	YES	11	575	0.75	0.05	0.1218	0.2437	LINC00478->chr21:17442842-17999716:+,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.75	0.3655	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS3--SEPT12	4	43	ANKS3	3685	chr16:4779981:-	SEPT12	25046	chr16:4834069:-	ONLY_REF_SPLICE	YES	50	0	0.48	1	0.0443	0.4763	LOCAL_REARRANGEMENT:-:[43291],ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,SEPT12->chr16:4827670-4838522:-,septin_12	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.5206	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EPS15L1--PALM3	12	0	EPS15L1	1173	chr19:16582724:-	PALM3	35553	chr19:14167616:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1329	0	EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1,PALM3->chr19:14164177-14169971:-,paralemmin_3	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1329	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00478--PTBP1	10	8	LINC00478	5289	chr21:17603435:+	PTBP1	33535	chr19:808360:+	ONLY_REF_SPLICE	YES	11	453	0.62	0.04	0.1108	0.0886	LINC00478->chr21:17442842-17999716:+,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.62	0.1994	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF625--LINC00478	7	13	ZNF625	1176	chr19:12267371:-	LINC00478	12553	chr21:17553911:+	ONLY_REF_SPLICE	YES	58	0	0.26	1	0.0775	0.144	ZNF625->chr19:12251032-12267546:-,zinc_finger_protein_625,LINC00478->chr21:17442842-17999716:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.2215	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL15--GABRB2	7	8	ARL15	5950	chr5:53409032:-	GABRB2	18157	chr5:160886850:-	ONLY_REF_SPLICE	YES	22	0	0.41	1	0.0775	0.0886	ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,GABRB2->chr5:160715436-160976050:-,gamma-aminobutyric_acid_type_A_receptor_beta2_subunit	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	0.1661	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS3--SEPT12	8	1	ANKS3	1223	chr16:4784157:-	SEPT12	26798	chr16:4829787:-	ONLY_REF_SPLICE	YES	7	2	0.56	0.82	0.0886	0.0111	LOCAL_REARRANGEMENT:-:[43291],ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,SEPT12->chr16:4827670-4838522:-,septin_12	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	0.82	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF625--LINC00478	2	25	ZNF625	2303	chr19:12258491:-	LINC00478	12553	chr21:17553911:+	ONLY_REF_SPLICE	YES	8	0	0.77	1	0.0222	0.2769	ZNF625->chr19:12251032-12267546:-,zinc_finger_protein_625,LINC00478->chr21:17442842-17999716:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.2991	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL26L1--RP5-1028K7.2	6	6	RPL26L1	3454	chr5:172395602:+	RP5-1028K7.2	11965	chr17:38682696:+	ONLY_REF_SPLICE	YES	92	0	0.12	1	0.0665	0.0665	RPL26L1->chr5:172385732-172396774:+,ribosomal_protein_L26_like_1,RP5-1028K7.2->chr17:38673278-38683254:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.133	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-498C9.2--APOE	7	0	RP11-498C9.2	1445	chr17:79801485:+	APOE	6815	chr19:45411031:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0	RP11-498C9.2->chr17:79801041-79801834:+,APOE->apolipoprotein_E,chr19:45409011-45412650:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMFG--TICAM1	6	0	GMFG	2293	chr19:39826614:-	TICAM1	10595	chr19:4818528:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0665	0	GMFG->chr19:39818993-39833012:-,glia_maturation_factor_gamma,TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFIX--SLC38A8	4	3	NFIX	9082	chr19:13186485:+	SLC38A8	22261	chr16:84075764:-	ONLY_REF_SPLICE	YES	71	0	0.09	1	0.0443	0.0332	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,SLC38A8->chr16:84043272-84076241:-,solute_carrier_family_38_member_8	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-321K16.1--SLC25A48	4	2	CTC-321K16.1	4781	chr5:134965066:+	SLC25A48	10390	chr5:135178105:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0443	0.0222	CTC-321K16.1->chr5:134895267-134970564:+,SLC25A48->chr5:135170338-135224326:+,solute_carrier_family_25_member_48	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0665	TRUE	0	3	0	3	3	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK8--RP11-509J21.3	3	1	DOCK8	30390	chr9:371566:+	RP11-509J21.3	69948	chr9:3690837:+	ONLY_REF_SPLICE	YES	59	5	0.06	0.44	0.0332	0.0111	DOCK8->chr9:214854-465259:+,dedicator_of_cytokinesis_8,RP11-509J21.3->chr9:3674546-3691814:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.44	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK8--RP11-509J21.1	1	7	DOCK8	30390	chr9:371566:+	RP11-509J21.1	75565	chr9:3671477:+	ONLY_REF_SPLICE	NO	59	13	0.12	0.38	0.0111	0.0775	DOCK8->chr9:214854-465259:+,dedicator_of_cytokinesis_8,RP11-509J21.1->chr9:3526723-3671646:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.38	0.0886	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NECAB2--PLIN3	2	2	NECAB2	4052	chr16:84012157:+	PLIN3	19033	chr19:4861423:-	ONLY_REF_SPLICE	YES	1	9	0.8	0.31	0.0222	0.0222	NECAB2->N-terminal_EF-hand_calcium_binding_protein_2,chr16:84002237-84036381:+,PLIN3->chr19:4838353-4867780:-,perilipin_3	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.8	0.0444	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NECAB2--PLIN3	2	2	NECAB2	5078	chr16:84014469:+	PLIN3	19033	chr19:4861423:-	ONLY_REF_SPLICE	YES	2	9	0.67	0.31	0.0222	0.0222	NECAB2->N-terminal_EF-hand_calcium_binding_protein_2,chr16:84002237-84036381:+,PLIN3->chr19:4838353-4867780:-,perilipin_3	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.67	0.0444	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLYCD--AP1M2	2	1	MLYCD	3817	chr16:83941887:+	AP1M2	14453	chr19:10694746:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0222	0.0111	MLYCD->chr16:83932731-83949787:+,malonyl-CoA_decarboxylase,AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf63--SERPINB6	2	0	C1orf63	8720	chr1:25594231:-	SERPINB6	24334	chr6:2959576:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,SERPINB6->chr6:2948393-2972090:-,serpin_family_B_member_6	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--NR5A1	2	0	CBFA2T3	7645	chr16:88964486:-	NR5A1	26773	chr9:127255428:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,NR5A1->chr9:127243516-127269709:-,nuclear_receptor_subfamily_5_group_A_member_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	2	0	CCDC26	1312	chr8:130692174:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	2	0	1	2	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAUS7--BCAP31	2	0	HAUS7	2843	chrX:152735908:-	BCAP31	20198	chrX:152969549:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	HAUS7->HAUS_augmin_like_complex_subunit_7,chrX:152713124-152760978:-,BCAP31->B-cell_receptor-associated_protein_31,chrX:152965947-152990152:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYL1--SLC3A2	2	0	LYL1	1631	chr19:13213345:-	SLC3A2	14973	chr11:62650380:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	LYL1->Oncogene{Bushman},chr19:13209847-13213975:-,lymphoblastic_leukemia_associated_hematopoiesis_regulator_1,SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NTN1--STX8	2	0	NTN1	2850	chr17:8926708:+	STX8	29316	chr17:9281970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:2=pct:0.6],Esophagus=[count:2=pct:0.5]},GTEx_v2:{count=20;pct=0.23%;dist=Esophagus_-_Muscularis=7,Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Aorta=2,Stomach=1,Breast_-_Mammary_Tissue=1,Uterus=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Brain_-_Cortex=1},LOCAL_INVERSION:+:-:[6471],NTN1->chr17:8924859-9147317:+,netrin_1,STX8->chr17:9153788-9479908:-,syntaxin_8	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	1	4	0	1	1	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAF1--MARCH6	2	0	RAF1	16342	chr3:12629090:-	MARCH6	36338	chr5:10402496:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	RAF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},Raf-1_proto-oncogene,_serine/threonine_kinase,chr3:12625100-12705725:-,MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS25--TPM1	2	0	RPS25	1410	chr11:118888992:-	TPM1	13022	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx&tcga_normals:1/3694=0.03%,RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SERP1--U2AF1	2	0	SERP1	1285	chr3:150320731:-	U2AF1	25334	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	SERP1->chr3:150259781-150321015:-,stress-associated_endoplasmic_reticulum_protein_1,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFSWAP--PTTG1IP	2	0	SFSWAP	1367	chr12:132195992:+	PTTG1IP	37183	chr21:46271542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	SFSWAP->chr12:132195626-132284282:+,splicing_factor,_suppressor_of_white-apricot_homolog,PTTG1IP->Oncogene{Bushman},chr21:46269500-46293752:-,pituitary_tumor-transforming_1_interacting_protein	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STXBP5--PVT1	2	0	STXBP5	4539	chr6:147560406:+	PVT1	60292	chr8:129113226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM18--BEND3	2	0	TMEM18	1151	chr2:677289:-	BEND3	14017	chr6:107427366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	TMEM18->chr2:667335-677439:-,transmembrane_protein_18,BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP32--PEX7	2	0	USP32	3790	chr17:58469243:-	PEX7	50688	chr6:137166753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PEX7->chr6:137143717-137235075:+,peroxisomal_biogenesis_factor_7	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS3--SEPT12	1	1	ANKS3	1223	chr16:4784157:-	SEPT12	25557	chr16:4833558:-	ONLY_REF_SPLICE	YES	7	2	0.22	0.5	0.0111	0.0111	LOCAL_REARRANGEMENT:-:[43291],ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,SEPT12->chr16:4827670-4838522:-,septin_12	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.5	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
OVMANA_OVARY	TRABD--CAPN1	123	8	TRABD	1062	chr22:50624405:+	CAPN1	25503	chr11:64976794:+	ONLY_REF_SPLICE	YES	1	285	0.99	0.31	1.5208	0.0989	TRABD->TraB_domain_containing,chr22:50624344-50638027:+,CAPN1->calpain_1,chr11:64948037-64979477:+	OVMANA_OVARY	0.31	0.99	1.6197	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	RAI1--ZC3H7A	42	16	RAI1	5710	chr17:17627473:+	ZC3H7A	23717	chr16:11876244:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.5193	0.1978	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	OVMANA_OVARY	0.98	1	0.7171	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	KAT5--RASIP1	26	12	KAT5	5518	chr11:65484278:+	RASIP1	21158	chr19:49225258:-	ONLY_REF_SPLICE	YES	52	0	0.42	1	0.3215	0.1484	{Klijn_CCL:Ovary=1},KAT5->Oncogene{Bushman},chr11:65479467-65487075:+,lysine_acetyltransferase_5,RASIP1->Ras_interacting_protein_1,chr19:49223844-49243978:-	OVMANA_OVARY	0.42	1	0.4699	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	TRABD--CAPN1	21	8	TRABD	1087	chr22:50624430:+	CAPN1	25503	chr11:64976794:+	ONLY_REF_SPLICE	YES	2	285	0.94	0.09	0.2597	0.0989	TRABD->TraB_domain_containing,chr22:50624344-50638027:+,CAPN1->calpain_1,chr11:64948037-64979477:+	OVMANA_OVARY	0.09	0.94	0.3586	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	ITCH--ASIP	13	25	ITCH	3377	chr20:32981687:+	ASIP	35434	chr20:32848171:+	ONLY_REF_SPLICE	YES	45	0	0.46	1	0.1607	0.3091	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUAD:1|LUSC:1|OV:1],LOCAL_REARRANGEMENT:+:[93891],ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	OVMANA_OVARY	0.46	1	0.4698	TRUE	0	3	0	2	3	TRUE	ACH-000646
OVMANA_OVARY	ZC3H7A--BCAR4	15	0	ZC3H7A	1144	chr16:11890980:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1855	0	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	OVMANA_OVARY	1	1	0.1855	TRUE	0	12	0	3	12	TRUE	ACH-000646
OVMANA_OVARY	SMARCA4--CARM1	9	7	SMARCA4	35350	chr19:11145808:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	54	18	0.23	0.47	0.1113	0.0866	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	OVMANA_OVARY	0.23	0.47	0.1979	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	ZNF14--UCA1	8	10	ZNF14	1142	chr19:19843765:-	UCA1	9362	chr19:15939974:+	INCL_NON_REF_SPLICE	YES	7	15	0.72	0.55	0.0989	0.1236	ZNF14->chr19:19821280-19843906:-,zinc_finger_protein_14,UCA1->chr19:15939771-15947130:+,urothelial_cancer_associated_1_(non-protein_coding)	OVMANA_OVARY	0.55	0.72	0.2225	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	TMEM260--MLLT10P1	8	6	TMEM260	11571	chr14:57079003:+	MLLT10P1	30931	chr20:29638054:-	INCL_NON_REF_SPLICE	YES	4	0	0.78	1	0.0989	0.0742	TMEM260->chr14:56955072-57117324:+,transmembrane_protein_260,MLLT10P1->chr20:29637799-29638060:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10_pseudogene_1	OVMANA_OVARY	0.78	1	0.1731	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	DNAJC3--CLDN10	7	6	DNAJC3	1199	chr13:96329591:+	CLDN10	21761	chr13:96212386:+	ONLY_REF_SPLICE	YES	13	105	0.5	0.11	0.0866	0.0742	LOCAL_REARRANGEMENT:+:[97380],DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,CLDN10->chr13:96085858-96232013:+,claudin_10	OVMANA_OVARY	0.11	0.5	0.1608	TRUE	1	2	0	1	2	TRUE	ACH-000646
OVMANA_OVARY	CTC-432M15.3--CDC42SE2	7	5	CTC-432M15.3	17637	chr5:130825239:-	CDC42SE2	45467	chr5:130694902:+	ONLY_REF_SPLICE	YES	3	22	0.8	0.35	0.0866	0.0618	LOCAL_INVERSION:-:+:[27444],CTC-432M15.3->chr5:130761584-131132676:-,CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+	OVMANA_OVARY	0.35	0.8	0.1484	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	ZNF101--NACC1	5	12	ZNF101	1171	chr19:19779775:+	NACC1	15042	chr19:13246014:+	ONLY_REF_SPLICE	YES	8	0	0.68	1	0.0618	0.1484	ZNF101->chr19:19779605-19794318:+,zinc_finger_protein_101,NACC1->chr19:13228917-13251955:+,nucleus_accumbens_associated_1	OVMANA_OVARY	0.68	1	0.2102	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	BRE--SNX17	6	7	BRE	9467	chr2:28268666:+	SNX17	24958	chr2:27595490:+	ONLY_REF_SPLICE	YES	50	168	0.21	0.07	0.0742	0.0866	{Klijn_CCL:Ovary=1},BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,SNX17->chr2:27593389-27599995:+,sorting_nexin_17	OVMANA_OVARY	0.07	0.21	0.1608	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	ZC3H7A--BCAR4	6	6	ZC3H7A	2049	chr16:11890075:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	0	4	1	0.75	0.0742	0.0742	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	OVMANA_OVARY	0.75	1	0.1484	TRUE	0	12	0	3	12	TRUE	ACH-000646
OVMANA_OVARY	FOXO1--MRPS31	6	5	FOXO1	2015	chr13:41239720:-	MRPS31	20984	chr13:41303737:-	ONLY_REF_SPLICE	YES	0	72	1	0.13	0.0742	0.0618	LOCAL_REARRANGEMENT:-:[62698],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,MRPS31->chr13:41303432-41345309:-,mitochondrial_ribosomal_protein_S31	OVMANA_OVARY	0.13	1	0.136	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	TSPAN14--DYDC2	7	0	TSPAN14	10187	chr10:82269227:+	DYDC2	40494	chr10:82126444:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0866	0	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],LOCAL_REARRANGEMENT:+:[86093],TSPAN14->chr10:82213922-82292879:+,tetraspanin_14,DYDC2->DPY30_domain_containing_2,chr10:82104501-82127829:+	OVMANA_OVARY	1	1	0.0866	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	CTD-3116E22.6--ZNF274	6	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0742	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	OVMANA_OVARY	1	1	0.0742	TRUE	0	0	0	13	0	TRUE	ACH-000646
OVMANA_OVARY	SYNRG--RP11-1407O15.2	4	8	SYNRG	20601	chr17:35913217:-	RP11-1407O15.2	49147	chr17:36361804:-	ONLY_REF_SPLICE	YES	16	57	0.43	0.17	0.0495	0.0989	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,RP11-1407O15.2->chr17:36337717-36421858:-	OVMANA_OVARY	0.17	0.43	0.1484	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	WWC1--TENM2	5	2	WWC1	7280	chr5:167826572:+	TENM2	74357	chr5:167671425:+	ONLY_REF_SPLICE	YES	106	1	0.06	0.88	0.0618	0.0247	LOCAL_REARRANGEMENT:+:[27494],WWC1->WW_and_C2_domain_containing_1,chr5:167718656-167899308:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	OVMANA_OVARY	0.06	0.88	0.0865	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	ACOX1--PCBP1-AS1	5	1	ACOX1	8304	chr17:73949532:-	PCBP1-AS1	37662	chr2:70278437:-	ONLY_REF_SPLICE	YES	35	26	0.15	0.19	0.0618	0.0124	ACOX1->acyl-CoA_oxidase_1,_palmitoyl,chr17:73937588-73975515:-,PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-	OVMANA_OVARY	0.15	0.19	0.0742	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	SYNRG--RP11-1407O15.2	3	6	SYNRG	20601	chr17:35913217:-	RP11-1407O15.2	50255	chr17:36359042:-	ONLY_REF_SPLICE	YES	16	37	0.36	0.2	0.0371	0.0742	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,RP11-1407O15.2->chr17:36337717-36421858:-	OVMANA_OVARY	0.2	0.36	0.1113	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	DENND5A--TMEM41B	4	0	DENND5A	1430	chr11:9286508:-	TMEM41B	33953	chr11:9321248:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[15264],DENND5A->DENN_domain_containing_5A,chr11:9160372-9286937:-,TMEM41B->chr11:9302201-9336327:-,transmembrane_protein_41B	OVMANA_OVARY	1	1	0.0495	TRUE	0	1	0	1	1	TRUE	ACH-000646
OVMANA_OVARY	RAI1--ZC3H7A	3	4	RAI1	5710	chr17:17627473:+	ZC3H7A	25681	chr16:11873219:-	ONLY_REF_SPLICE	YES	1	20	0.88	0.26	0.0371	0.0495	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	OVMANA_OVARY	0.26	0.88	0.0866	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	AAK1--PRPSAP1	3	2	AAK1	17292	chr2:69736363:-	PRPSAP1	48127	chr17:74326179:-	ONLY_REF_SPLICE	YES	7	39	0.42	0.11	0.0371	0.0247	AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,PRPSAP1->chr17:74305567-74380602:-,phosphoribosyl_pyrophosphate_synthetase-associated_protein_1	OVMANA_OVARY	0.11	0.42	0.0618	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	ZC3H7A--BCAR4	2	6	ZC3H7A	2049	chr16:11890075:-	BCAR4	31097	chr16:11915612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0.0742	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	OVMANA_OVARY	1	1	0.0989	TRUE	0	7	0	3	7	TRUE	ACH-000646
OVMANA_OVARY	DMXL2--GNB5	3	0	DMXL2	16226	chr15:51827860:-	GNB5	64217	chr15:52433469:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	HGNC_GENEFAM,DMXL2->Dmx_like_2,chr15:51739908-51915030:-,GNB5->G_protein_subunit_beta_5,chr15:52413117-52483566:-	OVMANA_OVARY	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	PTCD3--GTF3C3	3	0	PTCD3	21912	chr2:86364263:+	GTF3C3	46346	chr2:197637877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3,GTF3C3->chr2:197627756-197664449:-,general_transcription_factor_IIIC_subunit_3	OVMANA_OVARY	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	RELB--HERC1	2	4	RELB	9815	chr19:45532250:+	HERC1	20308	chr15:64067848:-	ONLY_REF_SPLICE	YES	57	1	0.1	0.86	0.0247	0.0495	RELB->Oncogene{Bushman},RELB_proto-oncogene,_NF-kB_subunit,chr19:45504688-45541452:+,HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-	OVMANA_OVARY	0.1	0.86	0.0742	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	KAT5--RASIP1	1	7	KAT5	3915	chr11:65482381:+	RASIP1	21158	chr19:49225258:-	ONLY_REF_SPLICE	YES	76	0	0.1	1	0.0124	0.0866	{Klijn_CCL:Ovary=1},KAT5->Oncogene{Bushman},chr11:65479467-65487075:+,lysine_acetyltransferase_5,RASIP1->Ras_interacting_protein_1,chr19:49223844-49243978:-	OVMANA_OVARY	0.1	1	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	CDC42SE2--CTC-432M15.3	2	1	CDC42SE2	6369	chr5:130651837:+	CTC-432M15.3	40169	chr5:130799974:-	ONLY_REF_SPLICE	YES	24	6	0.11	0.33	0.0247	0.0124	LOCAL_INVERSION:+:-:[27444],CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,CTC-432M15.3->chr5:130761584-131132676:-	OVMANA_OVARY	0.11	0.33	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	PIGZ--DLG1	2	0	PIGZ	1374	chr3:196695558:-	DLG1	45557	chr3:196778539:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	LOCAL_REARRANGEMENT:-:[73500],PIGZ->chr3:196673214-196695931:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_Z,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	OVMANA_OVARY	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	ZC3H7A--BCAR4	2	0	ZC3H7A	1144	chr16:11890980:-	BCAR4	31097	chr16:11915612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	OVMANA_OVARY	1	1	0.0247	TRUE	0	7	0	3	7	TRUE	ACH-000646
OVMANA_OVARY	WWC1--TENM2	1	3	WWC1	10631	chr5:167837000:+	TENM2	46981	chr5:167474432:+	ONLY_REF_SPLICE	YES	107	0	0.04	1	0.0124	0.0371	LOCAL_REARRANGEMENT:+:[27494],WWC1->WW_and_C2_domain_containing_1,chr5:167718656-167899308:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	OVMANA_OVARY	0.04	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	WWC1--TENM2	1	3	WWC1	7280	chr5:167826572:+	TENM2	73154	chr5:167667915:+	ONLY_REF_SPLICE	YES	106	1	0.04	0.8	0.0124	0.0371	LOCAL_REARRANGEMENT:+:[27494],WWC1->WW_and_C2_domain_containing_1,chr5:167718656-167899308:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	OVMANA_OVARY	0.04	0.8	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	AAK1--PRPSAP1	1	1	AAK1	17292	chr2:69736363:-	PRPSAP1	49307	chr17:74324943:-	ONLY_REF_SPLICE	NO	7	52	0.22	0.04	0.0124	0.0124	AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,PRPSAP1->chr17:74305567-74380602:-,phosphoribosyl_pyrophosphate_synthetase-associated_protein_1	OVMANA_OVARY	0.04	0.22	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	CD109--MTO1	1	1	CD109	6064	chr6:74446231:+	MTO1	51886	chr6:74192172:+	ONLY_REF_SPLICE	YES	0	30	1	0.06	0.0124	0.0124	GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Skin=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Blood=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=12;pct=0.14%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Whole_Blood=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Testis=1},{Klijn_CCL:Skin=1},CD109->CD109_molecule,Oncogene{Bushman},chr6:74405508-74538040:+,MTO1->chr6:74171301-74218959:+,mitochondrial_tRNA_translation_optimization_1	OVMANA_OVARY	0.06	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	FGD6--USP44	1	1	FGD6	14045	chr12:95507427:-	USP44	38991	chr12:95928102:-	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0124	0.0124	FGD6->FYVE,_RhoGEF_and_PH_domain_containing_6,chr12:95470525-95611258:-,USP44->chr12:95910336-95945266:-,ubiquitin_specific_peptidase_44	OVMANA_OVARY	0.15	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	NEMF--RP11-58E21.7	1	1	NEMF	2641	chr14:50318281:-	RP11-58E21.7	40017	chr14:50509164:-	ONLY_REF_SPLICE	NO	34	0	0.06	1	0.0124	0.0124	NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,RP11-58E21.7->chr14:50508361-50555893:-	OVMANA_OVARY	0.06	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	PARD6B--RP4-530I15.6	1	1	PARD6B	2532	chr20:49354616:+	RP4-530I15.6	11954	chr20:49262235:+	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0124	0.0124	LOCAL_REARRANGEMENT:+:[69269],PARD6B->chr20:49348081-49373332:+,par-6_family_cell_polarity_regulator_beta,RP4-530I15.6->chr20:49262008-49278812:+	OVMANA_OVARY	0.14	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000646
NCIH1703_LUNG	PTMA--PTMS	530	4	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	2637	786	0.17	0.4	4.9491	0.0374	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0.17	0.4	4.9865	TRUE	0	0	0	16	0	TRUE	ACH-000747
NCIH1703_LUNG	KRIT1--COG5	44	22	KRIT1	9665	chr7:91863763:-	COG5	36057	chr7:106938791:-	ONLY_REF_SPLICE	YES	55	58	0.55	0.53	0.4109	0.2054	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5	NCIH1703_LUNG	0.53	0.55	0.6163	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	KRIT1--COG5	6	12	KRIT1	9306	chr7:91864122:-	COG5	36057	chr7:106938791:-	ONLY_REF_SPLICE	YES	50	58	0.26	0.24	0.056	0.1121	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5	NCIH1703_LUNG	0.24	0.26	0.1681	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	8	0	PTMA	6054	chr2:232576687:+	PTMS	13976	chr12:6879341:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	1	1	0.0747	TRUE	0	0	0	16	0	TRUE	ACH-000747
NCIH1703_LUNG	SMARCA1--APLN	7	1	SMARCA1	23977	chrX:128582310:-	APLN	30201	chrX:128782769:-	INCL_NON_REF_SPLICE	YES	105	0	0.07	1	0.0654	0.0093	SMARCA1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_1,chrX:128580480-128657477:-,APLN->apelin,chrX:128779240-128788933:-	NCIH1703_LUNG	0.07	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	USP46--DCUN1D4	7	1	USP46	15881	chr4:53463707:-	DCUN1D4	30838	chr4:52729603:+	INCL_NON_REF_SPLICE	YES	34	190	0.19	0.04	0.0654	0.0093	USP46->chr4:53457138-53525502:-,ubiquitin_specific_peptidase_46,DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4	NCIH1703_LUNG	0.04	0.19	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	AC002066.1--CAV1	6	0	AC002066.1	1112	chr7:116139408:-	CAV1	14768	chr7:116199000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.056	0	LOCAL_INVERSION:-:+:[25320],AC002066.1->chr7:115878314-116139519:-,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	NCIH1703_LUNG	1	1	0.056	TRUE	0	0	1	6	0	TRUE	ACH-000747
NCIH1703_LUNG	KRIT1--COG5	2	9	KRIT1	8711	chr7:91864717:-	COG5	36057	chr7:106938791:-	ONLY_REF_SPLICE	YES	69	58	0.14	0.16	0.0187	0.084	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5	NCIH1703_LUNG	0.14	0.16	0.1027	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	EMC2--EIF3E	3	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH1703_LUNG	1	1	0.028	TRUE	0	0	0	12	0	TRUE	ACH-000747
NCIH1703_LUNG	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIH1703_LUNG	1	1	0.0187	TRUE	0	0	0	10	0	TRUE	ACH-000747
NCIH1703_LUNG	HDLBP--THAP4	2	0	HDLBP	2464	chr2:242254985:-	THAP4	44071	chr2:242545888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein,THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-	NCIH1703_LUNG	1	1	0.0187	TRUE	0	2	0	4	1	TRUE	ACH-000747
NCIH1703_LUNG	NBN--CALB1	2	0	NBN	2566	chr8:90996753:-	CALB1	31320	chr8:91081465:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	LOCAL_REARRANGEMENT:-:[55380],NBN->Oncogene{Bushman},chr8:90945564-91015456:-,nibrin,CALB1->calbindin_1,chr8:91070836-91107703:-	NCIH1703_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	2	0	PTMA	6593	chr2:232577226:+	PTMS	14193	chr12:6879558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	1	1	0.0187	TRUE	0	0	0	16	0	TRUE	ACH-000747
NCIH1703_LUNG	SNHG16--TAF9	2	0	SNHG16	1092	chr17:74553939:+	TAF9	17471	chr5:68651780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-	NCIH1703_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	ARMC2--RCC1	1	1	ARMC2	6120	chr6:109197553:+	RCC1	27040	chr1:28834640:+	ONLY_REF_SPLICE	YES	7	3	0.22	0.4	0.0093	0.0093	ARMC2->armadillo_repeat_containing_2,chr6:109169619-109295186:+,RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1	NCIH1703_LUNG	0.22	0.4	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000747
EFE184_ENDOMETRIUM	NPRL3--LUC7L	351	205	NPRL3	6237	chr16:169125:-	LUC7L	35927	chr16:239338:-	ONLY_REF_SPLICE	YES	67	73	0.89	0.88	3.7708	2.2023	LOCAL_REARRANGEMENT:-:[50109],NPRL3->NPR3_like,_GATOR1_complex_subunit,chr16:134273-188859:-,LUC7L->LUC7_like,chr16:238968-279462:-	EFE184_ENDOMETRIUM	0.88	0.89	5.9731	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	NME6--FBLN2	255	171	NME6	5207	chr3:48338217:-	FBLN2	30726	chr3:13672829:+	ONLY_REF_SPLICE	YES	128	706	0.77	0.38	2.7395	1.837	NME6->NME/NM23_nucleoside_diphosphate_kinase_6,chr3:48334754-48343175:-,FBLN2->chr3:13573824-13679922:+,fibulin_2	EFE184_ENDOMETRIUM	0.38	0.77	4.5765	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	MAP4--UBE2D2	80	48	MAP4	5952	chr3:48019355:-	UBE2D2	43200	chr5:138979957:+	ONLY_REF_SPLICE	YES	175	61	0.42	0.68	0.8594	0.5157	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	EFE184_ENDOMETRIUM	0.42	0.68	1.3751	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	EXD3--PNPLA7	48	48	EXD3	2255	chr9:140289755:-	PNPLA7	51547	chr9:140387534:-	ONLY_REF_SPLICE	YES	42	2	0.7	0.98	0.5157	0.5157	GTEx_FI:{Adrenal_Gland=[count:1=pct:1.2],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Subcutaneous=1,Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:-:[36690],EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7	EFE184_ENDOMETRIUM	0.7	0.98	1.0314	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	SMARCA4--CARM1	47	28	SMARCA4	1253	chr19:11071850:+	CARM1	49237	chr19:11018715:+	ONLY_REF_SPLICE	YES	8	45	0.9	0.62	0.5049	0.3008	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	EFE184_ENDOMETRIUM	0.62	0.9	0.8057	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	MAP4--UBE2D2	23	30	MAP4	3829	chr3:48040128:-	UBE2D2	43200	chr5:138979957:+	ONLY_REF_SPLICE	YES	163	61	0.25	0.46	0.2471	0.3223	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	EFE184_ENDOMETRIUM	0.25	0.46	0.5694	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	NME6--FBLN2	2	90	NME6	3507	chr3:48339917:-	FBLN2	30726	chr3:13672829:+	ONLY_REF_SPLICE	YES	220	706	0.29	0.12	0.0215	0.9669	NME6->NME/NM23_nucleoside_diphosphate_kinase_6,chr3:48334754-48343175:-,FBLN2->chr3:13573824-13679922:+,fibulin_2	EFE184_ENDOMETRIUM	0.12	0.29	0.9884	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	KMT2A--UBE4A	22	7	KMT2A	12578	chr11:118347697:+	UBE4A	53577	chr11:118235755:+	ONLY_REF_SPLICE	YES	13	0	0.69	1	0.2363	0.0752	LOCAL_REARRANGEMENT:+:[37279],KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,UBE4A->chr11:118230300-118269926:+,ubiquitination_factor_E4A	EFE184_ENDOMETRIUM	0.69	1	0.3115	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	PDK1--RP11-187C18.5	19	18	PDK1	10395	chr2:173435552:+	RP11-187C18.5	33733	chr9:45394296:-	ONLY_REF_SPLICE	YES	17	0	0.69	1	0.2041	0.1934	PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1,RP11-187C18.5->chr9:45393845-45415976:-	EFE184_ENDOMETRIUM	0.69	1	0.3975	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	RP11-47I22.3--PRKCH	19	8	RP11-47I22.3	1221	chr14:62037478:+	PRKCH	24773	chr14:61857943:+	ONLY_REF_SPLICE	YES	10	7	0.73	0.79	0.2041	0.0859	YOSHIHARA_TCGA_num_samples[BRCA:2|KIRC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[19564],RP11-47I22.3->chr14:62037258-62125414:+,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	EFE184_ENDOMETRIUM	0.73	0.79	0.29	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	NPRL3--LUC7L	2	59	NPRL3	2781	chr16:180521:-	LUC7L	35927	chr16:239338:-	ONLY_REF_SPLICE	NO	84	73	0.42	0.46	0.0215	0.6338	LOCAL_REARRANGEMENT:-:[50109],NPRL3->NPR3_like,_GATOR1_complex_subunit,chr16:134273-188859:-,LUC7L->LUC7_like,chr16:238968-279462:-	EFE184_ENDOMETRIUM	0.42	0.46	0.6553	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	TRAP1--CREBBP	11	10	TRAP1	8641	chr16:3729720:-	CREBBP	30545	chr16:3860780:-	ONLY_REF_SPLICE	YES	379	41	0.05	0.34	0.1182	0.1074	LOCAL_REARRANGEMENT:-:[7457],TRAP1->Oncogene{Bushman},TNF_receptor_associated_protein_1,chr16:3701640-3767598:-,CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-	EFE184_ENDOMETRIUM	0.05	0.34	0.2256	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	WDHD1--DLGAP5	10	9	WDHD1	1395	chr14:55493429:-	DLGAP5	31762	chr14:55655898:-	ONLY_REF_SPLICE	YES	16	109	0.54	0.15	0.1074	0.0967	WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-,DLGAP5->chr14:55614830-55658396:-,discs_large_homolog_associated_protein_5	EFE184_ENDOMETRIUM	0.15	0.54	0.2041	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	NME6--FBLN2	1	43	NME6	5207	chr3:48338217:-	FBLN2	31855	chr3:13677945:+	ONLY_REF_SPLICE	YES	128	685	0.26	0.06	0.0107	0.4619	NME6->NME/NM23_nucleoside_diphosphate_kinase_6,chr3:48334754-48343175:-,FBLN2->chr3:13573824-13679922:+,fibulin_2	EFE184_ENDOMETRIUM	0.06	0.26	0.4726	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	PLEKHA4--TULP2	10	4	PLEKHA4	6428	chr19:49362726:-	TULP2	26599	chr19:49391518:-	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.1074	0.043	LOCAL_REARRANGEMENT:-:[12333],PLEKHA4->chr19:49340354-49371889:-,pleckstrin_homology_domain_containing_A4,TULP2->chr19:49384222-49401990:-,tubby_like_protein_2	EFE184_ENDOMETRIUM	0.82	1	0.1504	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	MICALL1--FBLN2	8	5	MICALL1	14531	chr22:38329119:+	FBLN2	27056	chr3:13611815:+	ONLY_REF_SPLICE	YES	101	2	0.11	0.87	0.0859	0.0537	MICALL1->MICAL_like_1,chr22:38301664-38338829:+,FBLN2->chr3:13573824-13679922:+,fibulin_2	EFE184_ENDOMETRIUM	0.11	0.87	0.1396	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	PCNXL3--XRRA1	6	10	PCNXL3	6194	chr11:65388437:+	XRRA1	39772	chr11:74563127:-	ONLY_REF_SPLICE	YES	69	5	0.19	0.76	0.0645	0.1074	PCNXL3->chr11:65383244-65404910:+,XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-	EFE184_ENDOMETRIUM	0.19	0.76	0.1719	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	PCNXL3--XRRA1	5	13	PCNXL3	6194	chr11:65388437:+	XRRA1	37605	chr11:74574066:-	ONLY_REF_SPLICE	YES	69	5	0.21	0.78	0.0537	0.1397	PCNXL3->chr11:65383244-65404910:+,XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-	EFE184_ENDOMETRIUM	0.21	0.78	0.1934	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	SH2B3--ACAD10	6	5	SH2B3	7983	chr12:111886174:+	ACAD10	32863	chr12:112182447:+	INCL_NON_REF_SPLICE	YES	17	36	0.39	0.23	0.0645	0.0537	SH2B3->SH2B_adaptor_protein_3,chr12:111843752-111889427:+,ACAD10->acyl-CoA_dehydrogenase_family_member_10,chr12:112123857-112194903:+	EFE184_ENDOMETRIUM	0.23	0.39	0.1182	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	SMG6--MST1	7	1	SMG6	22781	chr17:2075952:-	MST1	42845	chr3:49724235:-	ONLY_REF_SPLICE	YES	23	8	0.26	0.5	0.0752	0.0107	SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-,MST1->Oncogene{Bushman},chr3:49721380-49726934:-,macrophage_stimulating_1	EFE184_ENDOMETRIUM	0.26	0.5	0.0859	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	NPRL3--LUC7L	1	23	NPRL3	1711	chr16:188149:-	LUC7L	35927	chr16:239338:-	ONLY_REF_SPLICE	NO	77	73	0.24	0.25	0.0107	0.2471	LOCAL_REARRANGEMENT:-:[50109],NPRL3->NPR3_like,_GATOR1_complex_subunit,chr16:134273-188859:-,LUC7L->LUC7_like,chr16:238968-279462:-	EFE184_ENDOMETRIUM	0.24	0.25	0.2578	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	ZC3H3--RP11-661A12.12	6	1	ZC3H3	4593	chr8:144618427:-	RP11-661A12.12	17721	chr8:144715688:-	INCL_NON_REF_SPLICE	YES	23	0	0.23	1	0.0645	0.0107	LOCAL_REARRANGEMENT:-:[90618],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,RP11-661A12.12->chr8:144714241-144715926:-	EFE184_ENDOMETRIUM	0.23	1	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	VGLL4--COL4A1	5	2	VGLL4	4478	chr3:11744445:-	COL4A1	48526	chr13:110838900:-	ONLY_REF_SPLICE	YES	19	98	0.27	0.07	0.0537	0.0215	VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	EFE184_ENDOMETRIUM	0.07	0.27	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	SLC41A3--MTND2P28	5	0	SLC41A3	19445	chr3:125731493:-	MTND2P28	25510	chr1:565029:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	SLC41A3->chr3:125725198-125820404:-,solute_carrier_family_41_member_3,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	EFE184_ENDOMETRIUM	1	1	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	TEAD3--FKBP5	3	2	TEAD3	9857	chr6:35442790:-	FKBP5	22230	chr6:35565181:-	INCL_NON_REF_SPLICE	YES	26	39	0.16	0.11	0.0322	0.0215	LOCAL_REARRANGEMENT:-:[76509],TEAD3->TEA_domain_transcription_factor_3,chr6:35441374-35464853:-,FKBP5->FK506_binding_protein_5,chr6:35541362-35696360:-	EFE184_ENDOMETRIUM	0.11	0.16	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	TSPAN9--TULP3	2	6	TSPAN9	4878	chr12:3315584:+	TULP3	23522	chr12:3031428:+	ONLY_REF_SPLICE	YES	12	41	0.4	0.16	0.0215	0.0645	TSPAN9->chr12:3186521-3395730:+,tetraspanin_9,TULP3->chr12:2986389-3050306:+,tubby_like_protein_3	EFE184_ENDOMETRIUM	0.16	0.4	0.086	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	SRCIN1--METTL16	2	2	SRCIN1	15418	chr17:36708683:-	METTL16	42056	chr17:2344853:-	ONLY_REF_SPLICE	YES	6	15	0.4	0.21	0.0215	0.0215	SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-,METTL16->chr17:2308856-2415185:-,methyltransferase_like_16	EFE184_ENDOMETRIUM	0.21	0.4	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	HIF1A--PRKCH	2	0	HIF1A	1327	chr14:62162557:+	PRKCH	48659	chr14:61952220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	1	15	1	9	1	TRUE	ACH-000435
EFE184_ENDOMETRIUM	LA16c-313D11.12--LTBP3	2	0	LA16c-313D11.12	1650	chr16:739650:+	LTBP3	21738	chr11:65308764:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	LA16c-313D11.12->chr16:739001-742554:+,LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	NPC1--OSBPL1A	2	0	NPC1	1612	chr18:21166251:-	OSBPL1A	59770	chr18:21819346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	PCNXL3--XRRA1	2	0	PCNXL3	4295	chr11:65386538:+	XRRA1	37605	chr11:74574066:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	PCNXL3->chr11:65383244-65404910:+,XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	SLC12A6--AQR	2	0	SLC12A6	3870	chr15:34610762:-	AQR	36083	chr15:35236629:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	SLC12A6->chr15:34525460-34630261:-,solute_carrier_family_12_member_6,AQR->aquarius_intron-binding_spliceosomal_factor,chr15:35147732-35262040:-	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	TBC1D5--UST	2	0	TBC1D5	22918	chr3:17549966:-	UST	58672	chr6:149285546:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	WBSCR16--GTF2IRD2	2	0	WBSCR16	7358	chr7:74477020:-	GTF2IRD2	20739	chr7:74251505:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	WBSCR16->Williams-Beuren_syndrome_chromosome_region_16,chr7:74441226-74490064:-,GTF2IRD2->GTF2I_repeat_domain_containing_2,chr7:74210483-74267847:-	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	WBSCR27--XPO5	2	0	WBSCR27	3505	chr7:73254361:-	XPO5	20043	chr6:43526328:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	WBSCR27->Williams_Beuren_syndrome_chromosome_region_27,chr7:73248920-73256865:-,XPO5->chr6:43490072-43543812:-,exportin_5	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	ZC3H3--TSTA3	1	2	ZC3H3	4593	chr8:144618427:-	TSTA3	18808	chr8:144698893:-	ONLY_REF_SPLICE	YES	23	16	0.12	0.16	0.0107	0.0215	LOCAL_REARRANGEMENT:-:[71165],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,TSTA3->chr8:144694788-144700218:-,tissue_specific_transplantation_antigen_P35B	EFE184_ENDOMETRIUM	0.12	0.16	0.0322	TRUE	0	0	0	1	0	TRUE	ACH-000435
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV8-2--TRAJ8	126	21	TRAV8-2	1680	chr14:22315398:+	TRAJ8	4693	chr14:23005099:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6292	0.2715	HGNC_GENEFAM,TRAV8-2->T_cell_receptor_alpha_variable_8-2,chr14:22314719-22315403:+,TRAJ8->T_cell_receptor_alpha_joining_8,chr14:23005092-23005151:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.9007	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPTLC1--NOL8	49	7	SPTLC1	6553	chr9:94842298:-	NOL8	25194	chr9:95084028:-	ONLY_REF_SPLICE	YES	38	63	0.6	0.47	0.6336	0.0905	SPTLC1->chr9:94794281-94877666:-,serine_palmitoyltransferase_long_chain_base_subunit_1,NOL8->chr9:95059640-95087918:-,nucleolar_protein_8	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.6	0.7241	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KATNA1--RP11-162J8.3	47	12	KATNA1	1504	chr6:149969605:-	RP11-162J8.3	16184	chr6:149348916:-	ONLY_REF_SPLICE	YES	12	0	0.83	1	0.6077	0.1552	KATNA1->chr6:149916009-149970108:-,katanin_catalytic_subunit_A1,RP11-162J8.3->chr6:149348836-149353709:-	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.7629	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	45	8	TRAV2	1521	chr14:22181064:+	TRAJ4	4523	chr14:23011141:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5819	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6853	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	31	8	TRAV2	1526	chr14:22181069:+	TRAJ4	4524	chr14:23011142:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4008	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5042	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	17	11	TRAV6	1588	chr14:22237316:+	TRAJ5	4594	chr14:23009191:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2198	0.1422	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.362	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	16	8	TRAV6	1583	chr14:22237311:+	TRAJ5	4599	chr14:23009196:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2069	0.1034	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3103	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV10--TRAJ6	17	0	TRAV10	1601	chr14:22294236:+	TRAJ6	4643	chr14:23008054:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2198	0	HGNC_GENEFAM,TRAV10->T_cell_receptor_alpha_variable_10,chr14:22293636-22294239:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2198	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	12	11	TRAV6	1585	chr14:22237313:+	TRAJ5	4597	chr14:23009194:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1552	0.1422	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2974	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV10--TRAJ6	12	7	TRAV10	1597	chr14:22294232:+	TRAJ6	4606	chr14:23008017:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1552	0.0905	HGNC_GENEFAM,TRAV10->T_cell_receptor_alpha_variable_10,chr14:22293636-22294239:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2457	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPTLC1--NOL8	7	10	SPTLC1	7135	chr9:94841716:-	NOL8	25194	chr9:95084028:-	ONLY_REF_SPLICE	YES	39	63	0.3	0.21	0.0905	0.1293	SPTLC1->chr9:94794281-94877666:-,serine_palmitoyltransferase_long_chain_base_subunit_1,NOL8->chr9:95059640-95087918:-,nucleolar_protein_8	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.3	0.2198	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	7	8	TRAV6	1583	chr14:22237311:+	TRAJ5	4600	chr14:23009197:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0905	0.1034	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1939	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	6	8	TRAV2	1522	chr14:22181065:+	TRAJ4	4530	chr14:23011148:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.181	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAJ5	5	9	TRAV3	1605	chr14:22192564:+	TRAJ5	4613	chr14:23009193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0647	0.1164	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1811	TRUE	1	2	0	2	2	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	5	7	TRAV2	1514	chr14:22181057:+	TRAJ4	4522	chr14:23011140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0647	0.0905	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1552	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	4	8	TRAV2	1521	chr14:22181064:+	TRAJ4	4517	chr14:23011135:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1551	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	4	8	TRAV6	1576	chr14:22237304:+	TRAJ5	4600	chr14:23009197:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.1034	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1551	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	3	11	TRAV6	1587	chr14:22237315:+	TRAJ5	4593	chr14:23009190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1422	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.181	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	3	11	TRAV6	1590	chr14:22237318:+	TRAJ5	4591	chr14:23009188:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1422	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.181	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV10--TRAJ6	3	8	TRAV10	1601	chr14:22294236:+	TRAJ6	4604	chr14:23008015:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1034	HGNC_GENEFAM,TRAV10->T_cell_receptor_alpha_variable_10,chr14:22293636-22294239:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1422	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	8	TRAV2	1525	chr14:22181068:+	TRAJ4	4524	chr14:23011142:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1422	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	8	TRAV2	1523	chr14:22181066:+	TRAJ4	4528	chr14:23011146:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1422	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	8	TRAV2	1519	chr14:22181062:+	TRAJ4	4521	chr14:23011139:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1422	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	8	TRAV2	1523	chr14:22181066:+	TRAJ4	4521	chr14:23011139:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1422	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	7	TRAV2	1515	chr14:22181058:+	TRAJ4	4526	chr14:23011144:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.0905	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1293	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	2	TRAV2	1284	chr14:22180827:+	TRAJ4	4526	chr14:23011144:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0388	0.0259	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	2	TRAV2	1283	chr14:22180826:+	TRAJ4	4526	chr14:23011144:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0388	0.0259	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ6	3	0	TRAV2	1269	chr14:22180812:+	TRAJ6	4521	chr14:23008013:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ6	3	0	TRAV2	1279	chr14:22180822:+	TRAJ6	4529	chr14:23008021:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--RP11-571O6.1	3	0	WWOX	10605	chr16:78198186:+	RP11-571O6.1	34002	chr16:77632982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-571O6.1->chr16:77624703-77644578:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV8-1--TRAJ6	2	1	TRAV8-1	1600	chr14:22266058:+	TRAJ6	4601	chr14:23008016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0.0129	GTEx_FI:{Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},HGNC_GENEFAM,TRAV8-1->T_cell_receptor_alpha_variable_8-1,chr14:22265459-22266058:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	TRUE	1	2	0	1	2	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BANP--SLC7A5	2	0	BANP	3272	chr16:87985121:+	SLC7A5	39052	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	{Klijn_CCL:Skin=1},LOCAL_INVERSION:+:-:[79756],BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0259	TRUE	0	0	0	2	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ6	2	0	TRAV2	1523	chr14:22181066:+	TRAJ6	4524	chr14:23008016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000156
G361_SKIN	CDC37--PDE4C	104	117	CDC37	6180	chr19:10505698:-	PDE4C	17889	chr19:18347869:-	INCL_NON_REF_SPLICE	YES	1212	0	0.15	1	1.1237	1.2642	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,PDE4C->chr19:18318771-18366229:-,phosphodiesterase_4C	G361_SKIN	0.15	1	2.3879	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	CDC37--PDE4C	54	117	CDC37	6181	chr19:10505697:-	PDE4C	17887	chr19:18347871:-	ONLY_REF_SPLICE	YES	1219	0	0.12	1	0.5835	1.2642	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,PDE4C->chr19:18318771-18366229:-,phosphodiesterase_4C	G361_SKIN	0.12	1	1.8477	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	SIRT6--TARM1	55	7	SIRT6	1131	chr19:4182471:-	TARM1	12684	chr19:54579170:-	ONLY_REF_SPLICE	YES	7	0	0.9	1	0.5943	0.0756	SIRT6->chr19:4174106-4182601:-,sirtuin_6,TARM1->T_cell-interacting,_activating_receptor_on_myeloid_cells_1,chr19:54573149-54584634:-	G361_SKIN	0.9	1	0.6699	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	ACVR1--CYTIP	33	12	ACVR1	7435	chr2:158674897:-	CYTIP	30748	chr2:158291259:-	ONLY_REF_SPLICE	YES	58	0	0.44	1	0.3566	0.1297	ACVR1->activin_A_receptor_type_1,chr2:158592958-158732374:-,CYTIP->chr2:158271131-158345473:-,cytohesin_1_interacting_protein	G361_SKIN	0.44	1	0.4863	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	ZNF699--SIRT6	19	14	ZNF699	2542	chr19:9415748:-	SIRT6	12780	chr19:4180906:-	ONLY_REF_SPLICE	YES	10	16	0.77	0.67	0.2053	0.1513	ZNF699->chr19:9404951-9420514:-,zinc_finger_protein_699,SIRT6->chr19:4174106-4182601:-,sirtuin_6	G361_SKIN	0.67	0.77	0.3566	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	SIRT6--TARM1	20	4	SIRT6	1131	chr19:4182471:-	TARM1	13488	chr19:54578366:-	ONLY_REF_SPLICE	YES	7	0	0.77	1	0.2161	0.0432	SIRT6->chr19:4174106-4182601:-,sirtuin_6,TARM1->T_cell-interacting,_activating_receptor_on_myeloid_cells_1,chr19:54573149-54584634:-	G361_SKIN	0.77	1	0.2593	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	OCA2--HERC2	19	2	OCA2	1135	chr15:28344370:-	HERC2	99885	chr15:28387539:-	ONLY_REF_SPLICE	YES	42	114	0.33	0.16	0.2053	0.0216	LOCAL_REARRANGEMENT:-:[11682],OCA2->OCA2_melanosomal_transmembrane_protein,chr15:28000021-28344504:-,HERC2->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_2,chr15:28356186-28567298:-	G361_SKIN	0.16	0.33	0.2269	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	KDM4B--PLEKHF1	15	8	KDM4B	12322	chr19:5082515:+	PLEKHF1	38793	chr19:30164731:+	ONLY_REF_SPLICE	YES	49	2	0.32	0.92	0.1621	0.0864	KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1	G361_SKIN	0.32	0.92	0.2485	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	ZNF578--NACC1	14	1	ZNF578	1032	chr19:52956860:+	NACC1	17542	chr19:13246014:+	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1513	0.0108	ZNF578->chr19:52956829-53015407:+,zinc_finger_protein_578,NACC1->chr19:13228917-13251955:+,nucleus_accumbens_associated_1	G361_SKIN	0.94	1	0.1621	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	AP003900.6--AC008132.1	1	30	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	4	0	0.89	1	0.0108	0.3242	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	G361_SKIN	0.89	1	0.335	TRUE	0	0	0	12	0	TRUE	ACH-000572
G361_SKIN	AP003900.6--AC008132.1	6	9	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	32	1	0.32	0.0648	0.0972	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	G361_SKIN	0.32	1	0.162	TRUE	0	0	0	13	0	TRUE	ACH-000572
G361_SKIN	AP003900.6--AC008132.1	4	15	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0.1621	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	G361_SKIN	1	1	0.2053	TRUE	0	0	0	16	0	TRUE	ACH-000572
G361_SKIN	AP003900.6--AC008132.1	1	27	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	4	0	0.88	1	0.0108	0.2917	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	G361_SKIN	0.88	1	0.3025	TRUE	0	0	0	11	0	TRUE	ACH-000572
G361_SKIN	AP003900.6--AC008132.1	2	14	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	4	32	0.8	0.33	0.0216	0.1513	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	G361_SKIN	0.33	0.8	0.1729	TRUE	0	0	0	13	0	TRUE	ACH-000572
G361_SKIN	AC009499.1--RASGRP3	4	0	AC009499.1	1068	chr2:33932020:+	RASGRP3	21011	chr2:33736777:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	AC009499.1->chr2:33931953-34522820:+,RASGRP3->RAS_guanyl_releasing_protein_3,chr2:33661391-33789817:+	G361_SKIN	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	ZNF699--SIRT6	2	6	ZNF699	2542	chr19:9415748:-	SIRT6	14295	chr19:4179283:-	ONLY_REF_SPLICE	YES	10	115	0.44	0.07	0.0216	0.0648	ZNF699->chr19:9404951-9420514:-,zinc_finger_protein_699,SIRT6->chr19:4174106-4182601:-,sirtuin_6	G361_SKIN	0.07	0.44	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	PSPH--NUPL2	3	0	PSPH	1467	chr7:56118831:-	NUPL2	24205	chr7:23239077:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2	G361_SKIN	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	ADK--CCDC14	2	0	ADK	1142	chr10:75911101:+	CCDC14	29294	chr3:123667979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ADK->adenosine_kinase,chr10:75910960-76469061:+,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	AKT3--ADSS	2	0	AKT3	3500	chr1:244006427:-	ADSS	38307	chr1:244601070:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-	G361_SKIN	1	1	0.0216	TRUE	0	1	0	4	1	TRUE	ACH-000572
G361_SKIN	ANO4--SCYL2	2	0	ANO4	1022	chr12:101111325:+	SCYL2	43231	chr12:100676721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ANO4->anoctamin_4,chr12:101111304-101522419:+,SCYL2->SCY1_like_pseudokinase_2,chr12:100660918-100735502:+	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	B2M--MXI1	2	0	B2M	1137	chr15:45003811:+	MXI1	14593	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	CHCHD3--EXOC4	2	0	CHCHD3	1232	chr7:132766617:-	EXOC4	26235	chr7:133002038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	COPS4--PLSCR1	2	0	COPS4	1852	chr4:83956451:+	PLSCR1	21270	chr3:146254352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	COPS4->COP9_signalosome_subunit_4,chr4:83955600-83996971:+,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	GNPDA2--SLC12A9	2	0	GNPDA2	1122	chr4:44728491:-	SLC12A9	22631	chr7:100454490:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GNPDA2->chr4:44684217-44728612:-,glucosamine-6-phosphate_deaminase_2,SLC12A9->chr7:100424442-100464631:+,solute_carrier_family_12_member_9	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	GPC6--KIAA1468	2	0	GPC6	7767	chr13:94958377:+	KIAA1468	28980	chr18:59911997:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GPC6->chr13:93879095-95059655:+,glypican_6,KIAA1468->KIAA1468,chr18:59854491-59974355:+	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	HPS3--NSUN2	2	0	HPS3	1357	chr3:148847727:+	NSUN2	42703	chr5:6600345:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	HPS3->HPS3,_biogenesis_of_lysosomal_organelles_complex_2_subunit_1,chr3:148847371-148891519:+,NSUN2->NOP2/Sun_RNA_methyltransferase_family_member_2,chr5:6599352-6633404:-	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	LINC01059--TTC3	2	0	LINC01059	1432	chr11:123325537:+	TTC3	26007	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LINC01059->chr11:123325106-123331118:+,long_intergenic_non-protein_coding_RNA_1059,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	POLA1--USP10	2	0	POLA1	37730	chrX:24948666:+	USP10	53081	chr16:84792322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit,USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	PTPLAD1--SNX17	2	0	PTPLAD1	6124	chr15:65844056:+	SNX17	27723	chr2:27598973:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	PTPLAD1->chr15:65822756-65870687:+,SNX17->chr2:27593389-27599995:+,sorting_nexin_17	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	REEP5--MRPS27	2	0	REEP5	3516	chr5:112238077:-	MRPS27	16292	chr5:71593529:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	REEP5->chr5:112212084-112258236:-,receptor_accessory_protein_5,MRPS27->chr5:71515236-71616473:-,mitochondrial_ribosomal_protein_S27	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	G361_SKIN	1	1	0.0216	TRUE	0	1	0	17	0	TRUE	ACH-000572
G361_SKIN	SIRT6--TARM1	2	0	SIRT6	1131	chr19:4182471:-	TARM1	14386	chr19:54577468:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	SIRT6->chr19:4174106-4182601:-,sirtuin_6,TARM1->T_cell-interacting,_activating_receptor_on_myeloid_cells_1,chr19:54573149-54584634:-	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	STARD4--DERA	2	0	STARD4	3319	chr5:110842028:-	DERA	23284	chr12:16135242:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	STARD4->StAR_related_lipid_transfer_domain_containing_4,chr5:110831731-110848288:-,DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	USO1--G3BP2	2	0	USO1	1293	chr4:76650069:+	G3BP2	34605	chr4:76587233:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_INVERSION:+:-:[68],USO1->USO1_vesicle_transport_factor,chr4:76649777-76735382:+,G3BP2->G3BP_stress_granule_assembly_factor_2,chr4:76567966-76649709:-	G361_SKIN	1	1	0.0216	TRUE	0	0	0	3	0	TRUE	ACH-000572
G361_SKIN	CTC-786C10.1--UNKL	1	2	CTC-786C10.1	1532	chr16:85205413:+	UNKL	18514	chr16:1444216:-	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0108	0.0216	CTC-786C10.1->chr16:85204882-85218969:+,UNKL->chr16:1413206-1464752:-,unkempt_family_like_zinc_finger	G361_SKIN	0.43	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000572
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	IGF2BP2--RPL23A	122	237	IGF2BP2	1274	chr3:185542571:-	RPL23A	25635	chr17:27046501:+	INCL_NON_REF_SPLICE	YES	298	0	0.55	1	1.4216	2.7617	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.55	1	4.1833	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	GPI--CATSPERG	146	110	GPI	10123	chr19:34872424:+	CATSPERG	45004	chr19:38860799:+	ONLY_REF_SPLICE	YES	1242	3	0.17	0.99	1.7013	1.2818	GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase,CATSPERG->cation_channel_sperm_associated_auxiliary_subunit_gamma,chr19:38826415-38861589:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.17	0.99	2.9831	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	CCDC9--YARS	144	2	CCDC9	1630	chr19:47759866:+	YARS	17616	chr1:33272212:-	ONLY_REF_SPLICE	YES	0	505	1	0.22	1.678	0.0233	CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.22	1	1.7013	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	IGF2BP2--RPL23A	101	126	IGF2BP2	1274	chr3:185542571:-	RPL23A	26859	chr17:27047725:+	ONLY_REF_SPLICE	YES	298	205	0.43	0.53	1.1769	1.4683	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.43	0.53	2.6452	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	GPI--CATSPERG	20	122	GPI	10123	chr19:34872424:+	CATSPERG	44817	chr19:38860612:+	ONLY_REF_SPLICE	YES	1242	0	0.1	1	0.2331	1.4216	GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase,CATSPERG->cation_channel_sperm_associated_auxiliary_subunit_gamma,chr19:38826415-38861589:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.1	1	1.6547	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	ATP2A2--ZDHHC11B	44	22	ATP2A2	5892	chr12:110734542:+	ZDHHC11B	42803	chr5:716980:-	ONLY_REF_SPLICE	YES	329	1	0.17	0.99	0.5127	0.2564	ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,ZDHHC11B->chr5:710475-767067:-,zinc_finger_DHHC-type_containing_11B	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.17	0.99	0.7691	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	FYCO1--ZNF589	36	2	FYCO1	1103	chr3:46037214:-	ZNF589	31286	chr3:48289115:+	ONLY_REF_SPLICE	YES	5	13	0.88	0.75	0.4195	0.0233	FYCO1->FYVE_and_coiled-coil_domain_containing_1,chr3:45959396-46037316:-,ZNF589->chr3:48282590-48340743:+,zinc_finger_protein_589	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.75	0.88	0.4428	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	GPI--CATSPERG	4	113	GPI	10123	chr19:34872424:+	CATSPERG	44893	chr19:38860688:+	INCL_NON_REF_SPLICE	YES	1242	1	0.09	0.99	0.0466	1.3168	GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase,CATSPERG->cation_channel_sperm_associated_auxiliary_subunit_gamma,chr19:38826415-38861589:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.09	0.99	1.3634	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	CACNG8--ATP2A2	22	8	CACNG8	3611	chr19:54483261:+	ATP2A2	21640	chr12:110760797:+	ONLY_REF_SPLICE	YES	3	345	0.91	0.08	0.2564	0.0932	CACNG8->calcium_voltage-gated_channel_auxiliary_subunit_gamma_8,chr19:54466294-54493469:+,ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.08	0.91	0.3496	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	PALM2-AKAP2--RP11-654G14.1	23	4	PALM2-AKAP2	9458	chr9:112778319:+	RP11-654G14.1	24312	chr8:118142150:+	ONLY_REF_SPLICE	YES	25	0	0.52	1	0.268	0.0466	PALM2-AKAP2->PALM2-AKAP2_readthrough,chr9:112542589-112934792:+,RP11-654G14.1->chr8:118140694-118142538:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.52	1	0.3146	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	GPI--CATSPERG	2	56	GPI	10123	chr19:34872424:+	CATSPERG	45371	chr19:38861166:+	ONLY_REF_SPLICE	YES	1242	18	0.04	0.76	0.0233	0.6526	GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase,CATSPERG->cation_channel_sperm_associated_auxiliary_subunit_gamma,chr19:38826415-38861589:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.04	0.76	0.6759	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	DRAM1--KCNAB1	12	9	DRAM1	1570	chr12:102271698:+	KCNAB1	17107	chr3:155836000:+	ONLY_REF_SPLICE	YES	38	0	0.36	1	0.1398	0.1049	DRAM1->DNA_damage_regulated_autophagy_modulator_1,Oncogene{Bushman},chr12:102271129-102405908:+,KCNAB1->chr3:155755490-156256545:+,potassium_voltage-gated_channel_subfamily_A_member_regulatory_beta_subunit_1	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.2447	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	NFE2L1--CCDC9	12	4	NFE2L1	3854	chr17:46128990:+	CCDC9	17365	chr19:47761587:+	ONLY_REF_SPLICE	YES	148	4	0.1	0.8	0.1398	0.0466	NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.1	0.8	0.1864	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	YIPF4--TTC27	6	12	YIPF4	6127	chr2:32526564:+	TTC27	33866	chr2:32958895:+	ONLY_REF_SPLICE	YES	137	60	0.12	0.23	0.0699	0.1398	YIPF4->Yip1_domain_family_member_4,chr2:32502979-32541663:+,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.12	0.23	0.2097	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	CTD-2544M6.1--LINC00923	8	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	10269	chr15:98301891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0932	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0932	TRUE	0	3	0	6	3	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	ZNF589--FYCO1	7	1	ZNF589	1115	chr3:48282704:+	FYCO1	17531	chr3:46026514:-	ONLY_REF_SPLICE	YES	8	3	0.5	0.73	0.0816	0.0117	ZNF589->chr3:48282590-48340743:+,zinc_finger_protein_589,FYCO1->FYVE_and_coiled-coil_domain_containing_1,chr3:45959396-46037316:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.5	0.73	0.0933	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	AC113189.5--PHF23	6	4	AC113189.5	1155	chr17:7487236:-	PHF23	8172	chr17:7140979:-	ONLY_REF_SPLICE	YES	7	41	0.59	0.2	0.0699	0.0466	AC113189.5->chr17:7485282-7487390:-,PHF23->PHD_finger_protein_23,chr17:7138347-7143041:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.2	0.59	0.1165	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	PALM2-AKAP2--RP11-654G14.1	5	4	PALM2-AKAP2	9458	chr9:112778319:+	RP11-654G14.1	24308	chr8:118142146:+	INCL_NON_REF_SPLICE	YES	25	0	0.26	1	0.0583	0.0466	PALM2-AKAP2->PALM2-AKAP2_readthrough,chr9:112542589-112934792:+,RP11-654G14.1->chr8:118140694-118142538:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.26	1	0.1049	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	AKAP2--SLC30A8	4	0	AKAP2	7582	chr9:112778319:+	SLC30A8	33046	chr8:118159058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+,SLC30A8->chr8:117962512-118188953:+,solute_carrier_family_30_member_8	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	AP000350.4--PKM	3	3	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	11	1	0.35	0.035	0.035	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.07	TRUE	0	0	0	14	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	AC087294.2--DZIP1	2	0	AC087294.2	1120	chr17:21117763:+	DZIP1	25288	chr13:96246340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	AC087294.2->chr17:21117644-21133348:+,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	C17orf76-AS1--FAF1	2	0	C17orf76-AS1	1593	chr17:16342728:+	FAF1	18117	chr1:51210447:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	C17orf76-AS1->chr17:16342136-16381992:+,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	CMC2--MECP2	2	0	CMC2	2457	chr16:81040339:-	MECP2	26952	chrX:153298008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-,MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	IQCG--APBB2	2	0	IQCG	1614	chr3:197686400:-	APBB2	38589	chr4:40947087:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	IQCG->IQ_motif_containing_G,chr3:197615946-197687013:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	PNKP--CHAF1A	2	0	PNKP	2511	chr19:50369656:-	CHAF1A	20044	chr19:4430546:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	PNKP->chr19:50364461-50371166:-,polynucleotide_kinase_3'-phosphatase,CHAF1A->chr19:4402659-4445015:+,chromatin_assembly_factor_1_subunit_A	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	ARHGAP15--KYNU	1	1	ARHGAP15	3050	chr2:143887035:+	KYNU	49221	chr2:143742653:+	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0117	0.0117	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:+:[49041],ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+,KYNU->chr2:143635067-143799890:+,kynureninase	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000629
TE617T_SOFT_TISSUE	NASP--C17orf62	4	0	NASP	1360	chr1:46049877:+	C17orf62	29353	chr17:80403836:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	NASP->chr1:46049518-46084566:+,nuclear_autoantigenic_sperm_protein,C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62	TE617T_SOFT_TISSUE	1	1	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	PFAS--PDIA6	3	0	PFAS	15450	chr17:8172410:+	PDIA6	38360	chr2:10925153:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	PFAS->chr17:8150936-8173809:+,phosphoribosylformylglycinamidine_synthase,PDIA6->chr2:10923517-10978103:-,protein_disulfide_isomerase_family_A_member_6	TE617T_SOFT_TISSUE	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	APLP1--SAR1A	2	0	APLP1	10437	chr19:36369010:+	SAR1A	19993	chr10:71920825:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	APLP1->amyloid_beta_precursor_like_protein_1,chr19:36358801-36370693:+,SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	ARL10--ZNF451	2	0	ARL10	3290	chr5:175795985:+	ZNF451	51404	chr6:57025882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ARL10->ADP_ribosylation_factor_like_GTPase_10,chr5:175792471-175828866:+,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	CHM--CCAR1	2	0	CHM	2383	chrX:85282495:-	CCAR1	39266	chr10:70516030:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	CHM->CHM,_Rab_escort_protein_1,chrX:85116185-85302566:-,CCAR1->cell_division_cycle_and_apoptosis_regulator_1,chr10:70480769-70552134:+	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	CTNNA3--N4BP2L2	2	0	CTNNA3	9334	chr10:68940075:-	N4BP2L2	43576	chr13:33096407:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	CTNNA3->catenin_alpha_3,chr10:67672276-69455927:-,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	FNDC3B--CLEC2D	2	0	FNDC3B	1144	chr3:171757561:+	CLEC2D	52868	chr12:9833519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,CLEC2D->C-type_lectin_domain_family_2_member_D,chr12:9817565-9848413:+	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	FUS--RANBP1	2	0	FUS	1118	chr16:31191548:+	RANBP1	17603	chr22:20106536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+,RANBP1->RAN_binding_protein_1,chr22:20103461-20114878:+	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	INPP4A--CCNE1	2	0	INPP4A	4000	chr2:99137194:+	CCNE1	41892	chr19:30303885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	INPP4A->chr2:99061317-99210853:+,inositol_polyphosphate-4-phosphatase_type_I_A,CCNE1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:30302805-30315215:+,cyclin_E1	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	IPO7--HNRNPUL1	2	0	IPO7	1226	chr11:9406394:+	HNRNPUL1	35059	chr19:41774128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	IPO7->chr11:9406169-9469673:+,importin_7,HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	KIAA1191--MGAT1	2	0	KIAA1191	1367	chr5:175788605:-	MGAT1	23148	chr5:180220097:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	KIAA1191->KIAA1191,chr5:175773064-175788971:-,MGAT1->chr5:180217541-180242652:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,2-N-acetylglucosaminyltransferase	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	METTL23--MCM3	2	0	METTL23	2633	chr17:74725876:+	MCM3	11562	chr6:52144397:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	METTL23->chr17:74722912-74730018:+,methyltransferase_like_23,MCM3->chr6:52128807-52149679:-,minichromosome_maintenance_complex_component_3	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	MXD4--AC147651.3	2	0	MXD4	1570	chr4:2263452:-	AC147651.3	19095	chr7:563717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	MXD4->MAX_dimerization_protein_4,chr4:2249159-2264021:-,AC147651.3->chr7:560028-564869:+	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	PHIP--NADK2	2	0	PHIP	1789	chr6:79787165:-	NADK2	45865	chr5:36227667:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PHIP->Oncogene{Bushman},chr6:79645584-79787953:-,pleckstrin_homology_domain_interacting_protein,NADK2->NAD_kinase_2,_mitochondrial,chr5:36192694-36242381:-	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	PRCP--MIDN	2	0	PRCP	18059	chr11:82549429:-	MIDN	26463	chr19:1251561:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PRCP->chr11:82534544-82681626:-,prolylcarboxypeptidase,MIDN->chr19:1248552-1259142:+,midnolin	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	RAB40C--AXIN1	2	0	RAB40C	2077	chr16:640433:+	AXIN1	20482	chr16:348251:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,AXIN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},axin_1,chr16:337440-402673:-	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	RDH10--PABPC1	2	0	RDH10	3685	chr8:74209664:+	PABPC1	20957	chr8:101721451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RDH10->chr8:74206847-74237516:+,retinol_dehydrogenase_10_(all-trans),PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	SESTD1--ZMYM2	2	0	SESTD1	7261	chr2:180036847:-	ZMYM2	45830	chr13:20601343:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SESTD1->SEC14_and_spectrin_domain_containing_1,chr2:179966419-180129517:-,ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	SLC7A1--RAB11FIP3	2	0	SLC7A1	7159	chr13:30104675:-	RAB11FIP3	37590	chr16:568943:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1,RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	STK36--PIP4K2C	2	0	STK36	2931	chr2:219538679:+	PIP4K2C	29628	chr12:57992848:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	STK36->chr2:219536749-219567439:+,serine/threonine_kinase_36,PIP4K2C->chr12:57984957-57997198:+,phosphatidylinositol-5-phosphate_4-kinase_type_2_gamma	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
BICR56_UPPER_AERODIGESTIVE_TRACT	ATF6B--FKBPL	13	16	ATF6B	2151	chr6:32094880:-	FKBPL	14766	chr6:32097631:-	ONLY_REF_SPLICE	YES	125	24	0.19	0.55	0.1155	0.1422	LOCAL_REARRANGEMENT:-:[454],ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,FKBPL->FK506_binding_protein_like,chr6:32096484-32098068:-	BICR56_UPPER_AERODIGESTIVE_TRACT	0.19	0.55	0.2577	TRUE	0	0	0	1	0	TRUE	ACH-000771
NCIH1876_LUNG	UAP1--RGS4	217	73	UAP1	3349	chr1:162536138:+	RGS4	18165	chr1:163039042:+	ONLY_REF_SPLICE	YES	53	0	0.85	1	2.5089	0.844	{Klijn_CCL:Lung=1},UAP1->UDP-N-acetylglucosamine_pyrophosphorylase_1,chr1:162531323-162569627:+,RGS4->chr1:163038565-163046592:+,regulator_of_G-protein_signaling_4	NCIH1876_LUNG	0.85	1	3.3529	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	CREBBP--SRRM2-AS1	33	16	CREBBP	4785	chr16:3860604:-	SRRM2-AS1	48010	chr16:2793720:-	ONLY_REF_SPLICE	YES	14	1	0.78	0.98	0.3815	0.185	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,SRRM2-AS1->SRRM2_antisense_RNA_1,chr16:2787077-2802601:-	NCIH1876_LUNG	0.78	0.98	0.5665	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	PCBP2--CDS2	22	0	PCBP2	21228	chr12:53873455:+	CDS2	47507	chr20:5177881:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2544	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	NCIH1876_LUNG	1	1	0.2544	TRUE	0	802	86	3	772	TRUE	ACH-000586
NCIH1876_LUNG	PCBP2--CDS2	20	0	PCBP2	21220	chr12:53873447:+	CDS2	47498	chr20:5177872:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2312	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	NCIH1876_LUNG	1	1	0.2312	TRUE	0	802	86	3	772	TRUE	ACH-000586
NCIH1876_LUNG	CREBBP--SRRM2-AS1	14	20	CREBBP	4785	chr16:3860604:-	SRRM2-AS1	45817	chr16:2799660:-	ONLY_REF_SPLICE	YES	14	9	0.71	0.79	0.1619	0.2312	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,SRRM2-AS1->SRRM2_antisense_RNA_1,chr16:2787077-2802601:-	NCIH1876_LUNG	0.71	0.79	0.3931	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	PCBP2--CDS2	10	0	PCBP2	21225	chr12:53873452:+	CDS2	47503	chr20:5177877:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1156	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	NCIH1876_LUNG	1	1	0.1156	TRUE	0	802	86	3	772	TRUE	ACH-000586
NCIH1876_LUNG	PCBP2--CDS2	9	0	PCBP2	21228	chr12:53873455:+	CDS2	47508	chr20:5177882:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1041	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	NCIH1876_LUNG	1	1	0.1041	TRUE	0	802	86	3	772	TRUE	ACH-000586
NCIH1876_LUNG	ARMC4P1--RP11-748L13.2	3	0	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	NCIH1876_LUNG	1	1	0.0347	TRUE	1	34	11	8	34	TRUE	ACH-000586
NCIH1876_LUNG	OSBPL3--RPS4X	3	0	OSBPL3	17627	chr7:24874069:-	RPS4X	35554	chrX:71495557:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	OSBPL3->Oncogene{Bushman},chr7:24836158-25021253:-,oxysterol_binding_protein_like_3,RPS4X->chrX:71475529-71497150:-,ribosomal_protein_S4,_X-linked	NCIH1876_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	CYTH1--USP36	2	0	CYTH1	1096	chr17:76778284:-	USP36	28423	chr17:76834832:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	LOCAL_REARRANGEMENT:-:[5084],CYTH1->chr17:76670130-76778379:-,cytohesin_1,USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36	NCIH1876_LUNG	1	1	0.0231	TRUE	0	1	0	3	1	TRUE	ACH-000586
NCIH1876_LUNG	EIF3E--GAK	2	0	EIF3E	6301	chr8:109260842:-	GAK	35162	chr4:891946:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	NCIH1876_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	FARP1--STK24	2	0	FARP1	1931	chr13:98795746:+	STK24	70323	chr13:99171727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Aorta=1,Pituitary=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Ovary=1},LOCAL_INVERSION:+:-:[428],FARP1->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_1,chr13:98794816-99102027:+,STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24	NCIH1876_LUNG	1	1	0.0231	TRUE	0	0	0	2	0	TRUE	ACH-000586
NCIH1876_LUNG	PRKCI--ATAD5	2	0	PRKCI	18733	chr3:170016898:+	ATAD5	47571	chr17:29219625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PRKCI->ArcherDX_panel,FoundationOne_panel,chr3:169940153-170023769:+,protein_kinase_C_iota,ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+	NCIH1876_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	RP13-188A5.1--KLF8	2	0	RP13-188A5.1	1678	chrX:55935233:+	KLF8	9003	chrX:56291613:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	NCIH1876_LUNG	1	1	0.0231	TRUE	1	9	1	5	7	TRUE	ACH-000586
NCIH1876_LUNG	RRAS2--CADM1	2	0	RRAS2	2538	chr11:14380309:-	CADM1	24718	chr11:115111140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RRAS2->Oncogene{Bushman},chr11:14299472-14386052:-,related_RAS_viral_(r-ras)_oncogene_homolog_2,CADM1->cell_adhesion_molecule_1,chr11:115039938-115375675:-	NCIH1876_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	SLC25A13--DLX6-AS1	2	0	SLC25A13	4550	chr7:95906508:-	DLX6-AS1	30296	chr7:96598430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH1876_LUNG	1	1	0.0231	TRUE	0	0	0	2	0	TRUE	ACH-000586
NCIH1963_LUNG	RLF--MYCL	520	212	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	388	1526	0.65	0.32	6.4861	2.6443	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1963_LUNG	0.32	0.65	9.1304	TRUE	0	0	0	10	0	TRUE	ACH-000729
NCIH1963_LUNG	RLF--MYCL	265	337	RLF	1264	chr1:40627308:+	MYCL	18060	chr1:40367115:-	ONLY_REF_SPLICE	YES	388	698	0.61	0.46	3.3054	4.2035	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1963_LUNG	0.46	0.61	7.5089	TRUE	0	0	0	6	0	TRUE	ACH-000729
NCIH1963_LUNG	TCERG1--RBM27	293	57	TCERG1	19681	chr5:145878249:+	RBM27	50209	chr5:145648983:+	ONLY_REF_SPLICE	YES	132	12	0.73	0.97	3.6547	0.711	{Klijn_CCL:Sarcomatoid=1},TCERG1->chr5:145826874-145891524:+,transcription_elongation_regulator_1,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	NCIH1963_LUNG	0.73	0.97	4.3657	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	CAP1--HPCAL4	220	90	CAP1	10062	chr1:40533389:+	HPCAL4	18531	chr1:40150283:-	ONLY_REF_SPLICE	YES	1377	34	0.18	0.9	2.7441	1.1226	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,HPCAL4->chr1:40144320-40157361:-,hippocalcin_like_4	NCIH1963_LUNG	0.18	0.9	3.8667	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	TRIT1--RP11-656D10.5	69	55	TRIT1	3437	chr1:40322918:-	RP11-656D10.5	16996	chr1:40980306:-	INCL_NON_REF_SPLICE	YES	2170	113	0.05	0.52	0.8607	0.686	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,RP11-656D10.5->chr1:40980133-40980729:-	NCIH1963_LUNG	0.05	0.52	1.5467	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	TRIT1--RP11-656D10.5	56	53	TRIT1	3406	chr1:40322949:-	RP11-656D10.5	16989	chr1:40980313:-	INCL_NON_REF_SPLICE	YES	2067	122	0.05	0.47	0.6985	0.6611	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,RP11-656D10.5->chr1:40980133-40980729:-	NCIH1963_LUNG	0.05	0.47	1.3596	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	TRIT1--RP11-656D10.5	30	76	TRIT1	3437	chr1:40322918:-	RP11-656D10.5	16764	chr1:40980538:-	INCL_NON_REF_SPLICE	YES	2170	232	0.05	0.31	0.3742	0.948	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,RP11-656D10.5->chr1:40980133-40980729:-	NCIH1963_LUNG	0.05	0.31	1.3222	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	PTPN4--PCDP1	36	36	PTPN4	6279	chr2:120620219:+	PCDP1	72391	chr2:120404534:+	ONLY_REF_SPLICE	YES	25	0	0.74	1	0.449	0.449	LOCAL_REARRANGEMENT:+:[97380],PTPN4->chr2:120517207-120741394:+,protein_tyrosine_phosphatase,_non-receptor_type_4,PCDP1->chr2:120302008-120419827:+	NCIH1963_LUNG	0.74	1	0.898	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	RP11-656D10.3--SMAP2	43	4	RP11-656D10.3	1073	chr1:40974261:-	SMAP2	14171	chr1:40878688:+	ONLY_REF_SPLICE	YES	8	827	0.85	0.05	0.5363	0.0499	LOCAL_INVERSION:-:+:[69831],RP11-656D10.3->chr1:40958829-40974333:-,SMAP2->chr1:40810522-40888998:+,small_ArfGAP2	NCIH1963_LUNG	0.05	0.85	0.5862	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	PTPN4--PCDP1	31	24	PTPN4	6279	chr2:120620219:+	PCDP1	74693	chr2:120409550:+	ONLY_REF_SPLICE	YES	25	3	0.69	0.95	0.3867	0.2994	LOCAL_REARRANGEMENT:+:[97380],PTPN4->chr2:120517207-120741394:+,protein_tyrosine_phosphatase,_non-receptor_type_4,PCDP1->chr2:120302008-120419827:+	NCIH1963_LUNG	0.69	0.95	0.6861	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	RP11-499F3.2--TYW1	30	2	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	46	1	0.41	0.3742	0.0249	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	NCIH1963_LUNG	0.41	1	0.3991	TRUE	1	3	0	7	3	TRUE	ACH-000729
NCIH1963_LUNG	CCDC102B--RP11-169F17.1	21	6	CCDC102B	13702	chr18:66513658:+	RP11-169F17.1	26991	chr18:70868024:-	ONLY_REF_SPLICE	YES	8	0	0.77	1	0.2619	0.0748	CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B,RP11-169F17.1->chr18:70818476-70931715:-	NCIH1963_LUNG	0.77	1	0.3367	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	FAF1--AGBL4	16	6	FAF1	4914	chr1:51253672:-	AGBL4	31364	chr1:50317190:-	ONLY_REF_SPLICE	YES	96	2	0.19	0.92	0.1996	0.0748	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	NCIH1963_LUNG	0.19	0.92	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	RP11-656D10.3--ZNF684	17	0	RP11-656D10.3	1073	chr1:40974261:-	ZNF684	7872	chr1:41006258:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.212	0	LOCAL_INVERSION:-:+:[22900],RP11-656D10.3->chr1:40958829-40974333:-,ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684	NCIH1963_LUNG	1	1	0.212	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	TCERG1--RBM27	2	57	TCERG1	20966	chr5:145879534:+	RBM27	50209	chr5:145648983:+	ONLY_REF_SPLICE	YES	138	12	0.3	0.83	0.0249	0.711	{Klijn_CCL:Sarcomatoid=1},TCERG1->chr5:145826874-145891524:+,transcription_elongation_regulator_1,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	NCIH1963_LUNG	0.3	0.83	0.7359	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	TCERG1--RBM27	4	48	TCERG1	19673	chr5:145878241:+	RBM27	50209	chr5:145648983:+	INCL_NON_REF_SPLICE	YES	126	12	0.29	0.81	0.0499	0.5987	{Klijn_CCL:Sarcomatoid=1},TCERG1->chr5:145826874-145891524:+,transcription_elongation_regulator_1,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	NCIH1963_LUNG	0.29	0.81	0.6486	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	LYPD6B--KIF5C	10	8	LYPD6B	7317	chr2:149987467:+	KIF5C	26449	chr2:149679706:+	ONLY_REF_SPLICE	YES	13	111	0.58	0.14	0.1247	0.0998	LOCAL_REARRANGEMENT:+:[11348],LYPD6B->LY6/PLAUR_domain_containing_6B,chr2:149894621-150071776:+,KIF5C->chr2:149632819-149883273:+,kinesin_family_member_5C	NCIH1963_LUNG	0.14	0.58	0.2245	TRUE	0	0	0	2	0	TRUE	ACH-000729
NCIH1963_LUNG	NETO1--CCDC102B	9	9	NETO1	10342	chr18:70450913:-	CCDC102B	30069	chr18:66503986:+	ONLY_REF_SPLICE	YES	85	15	0.17	0.55	0.1123	0.1123	NETO1->chr18:70409549-70535381:-,neuropilin_and_tolloid_like_1,CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B	NCIH1963_LUNG	0.17	0.55	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	RP11-656D10.3--ZNF684	11	0	RP11-656D10.3	1073	chr1:40974261:-	ZNF684	8901	chr1:41007287:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1372	0	LOCAL_INVERSION:-:+:[22900],RP11-656D10.3->chr1:40958829-40974333:-,ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684	NCIH1963_LUNG	1	1	0.1372	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	NT5C1A--RIMS3	8	8	NT5C1A	1135	chr1:40137576:-	RIMS3	10790	chr1:41113514:-	ONLY_REF_SPLICE	YES	0	46	1	0.26	0.0998	0.0998	NT5C1A->5'-nucleotidase,_cytosolic_IA,chr1:40124793-40137710:-,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	NCIH1963_LUNG	0.26	1	0.1996	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	TTC28--MN1	9	3	TTC28	15001	chr22:28494903:-	MN1	46850	chr22:28147084:-	ONLY_REF_SPLICE	YES	9	12	0.57	0.5	0.1123	0.0374	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,MN1->Oncogene{Bushman},chr22:28144265-28197486:-,meningioma_(disrupted_in_balanced_translocation)_1	NCIH1963_LUNG	0.5	0.57	0.1497	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	CUL2--FRMD4A	7	2	CUL2	18889	chr10:35314060:-	FRMD4A	50894	chr10:13749113:-	ONLY_REF_SPLICE	YES	67	16	0.12	0.36	0.0873	0.0249	CUL2->chr10:35297479-35379570:-,cullin_2,FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-	NCIH1963_LUNG	0.12	0.36	0.1122	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	NETO1--CCDC102B	5	9	NETO1	10342	chr18:70450913:-	CCDC102B	29018	chr18:66490603:+	ONLY_REF_SPLICE	YES	85	18	0.14	0.44	0.0624	0.1123	NETO1->chr18:70409549-70535381:-,neuropilin_and_tolloid_like_1,CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B	NCIH1963_LUNG	0.14	0.44	0.1747	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	ADK--KAT6B	5	7	ADK	10209	chr10:76285184:+	KAT6B	38997	chr10:76780340:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.0624	0.0873	GTEx&tcga_normals:1/3694=0.03%,ADK->adenosine_kinase,chr10:75910960-76469061:+,KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B	NCIH1963_LUNG	0.8	1	0.1497	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	RNF43--TRIM25	3	1	RNF43	3270	chr17:56492687:-	TRIM25	22907	chr17:54981849:-	ONLY_REF_SPLICE	YES	2	79	0.67	0.05	0.0374	0.0125	HGNC_GENEFAM,RNF43->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:56429861-56494956:-,ring_finger_protein_43,TRIM25->chr17:54965270-54991399:-,tripartite_motif_containing_25	NCIH1963_LUNG	0.05	0.67	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	CCDC102B--DOK6	3	0	CCDC102B	14819	chr18:66542022:+	DOK6	35569	chr18:67508480:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B,DOK6->chr18:67068291-67516323:+,docking_protein_6	NCIH1963_LUNG	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	PGAM5--FBRSL1	3	0	PGAM5	4281	chr12:133294150:+	FBRSL1	15283	chr12:133084739:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	NCIH1963_LUNG	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	CELF1--WDR4	2	0	CELF1	14309	chr11:47505941:-	WDR4	45004	chr21:44263391:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,WDR4->WD_repeat_domain_4,chr21:44263204-44299678:-	NCIH1963_LUNG	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	MAPK11--MAPK8IP2	2	0	MAPK11	5220	chr22:50703750:-	MAPK8IP2	15563	chr22:51045086:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	MAPK11->chr22:50702142-50709196:-,mitogen-activated_protein_kinase_11,MAPK8IP2->chr22:51039114-51052409:+,mitogen-activated_protein_kinase_8_interacting_protein_2	NCIH1963_LUNG	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	WDTC1--NCMAP	2	0	WDTC1	3667	chr1:27589726:+	NCMAP	26141	chr1:24927431:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,NCMAP->chr1:24882602-24935819:+,non-compact_myelin_associated_protein	NCIH1963_LUNG	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000729
H4_CENTRAL_NERVOUS_SYSTEM	TPX2--HM13	404	70	TPX2	15049	chr20:30371724:+	HM13	26139	chr20:30115287:+	ONLY_REF_SPLICE	YES	202	342	0.7	0.58	3.5378	0.613	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	H4_CENTRAL_NERVOUS_SYSTEM	0.58	0.7	4.1508	TRUE	0	0	0	2	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	MARS--TMEM120B	240	115	MARS	10946	chr12:57898082:+	TMEM120B	21395	chr12:122181535:+	ONLY_REF_SPLICE	YES	511	53	0.41	0.87	2.1017	1.0071	MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase,TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B	H4_CENTRAL_NERVOUS_SYSTEM	0.41	0.87	3.1088	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF766--BSPH1	86	0	ZNF766	1061	chr19:52772884:+	BSPH1	19642	chr19:48471466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7531	0	ZNF766->chr19:52772824-52795977:+,zinc_finger_protein_766,BSPH1->binder_of_sperm_protein_homolog_1,chr19:48471303-48495427:-	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.7531	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-574K11.29	67	3	TIMM23	6952	chr10:51606988:-	RP11-574K11.29	13578	chr10:75473090:-	INCL_NON_REF_SPLICE	YES	168	3	0.29	0.96	0.5867	0.0263	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.29->chr10:75463493-75473339:-	H4_CENTRAL_NERVOUS_SYSTEM	0.29	0.96	0.613	TRUE	1	1	0	6	1	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	MAP2K2--C17orf104	43	9	MAP2K2	1346	chr19:4123781:-	C17orf104	18253	chr17:42734495:+	ONLY_REF_SPLICE	YES	39	1	0.57	0.98	0.3765	0.0788	MAP2K2->ArcherDX_panel,FoundationOne_panel,chr19:4090319-4124126:-,mitogen-activated_protein_kinase_kinase_2,C17orf104->chr17:42733762-42767676:+	H4_CENTRAL_NERVOUS_SYSTEM	0.57	0.98	0.4553	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF283--CTD-3187F8.11	36	18	ZNF283	5490	chr19:44339744:+	CTD-3187F8.11	16812	chr19:51781709:+	ONLY_REF_SPLICE	YES	6	0	0.9	1	0.3153	0.1576	ZNF283->chr19:44331444-44353307:+,zinc_finger_protein_283,CTD-3187F8.11->chr19:51774520-51784488:+	H4_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.4729	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF350--UPK1A-AS1	33	7	ZNF350	7604	chr19:52472258:-	UPK1A-AS1	16173	chr19:36159587:-	ONLY_REF_SPLICE	YES	6	0	0.87	1	0.289	0.0613	ZNF350->chr19:52467596-52490109:-,zinc_finger_protein_350,UPK1A-AS1->UPK1A_antisense_RNA_1,chr19:36158850-36164193:-	H4_CENTRAL_NERVOUS_SYSTEM	0.87	1	0.3503	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	CCDC57--SLC38A10	23	10	CCDC57	24489	chr17:80109436:-	SLC38A10	57249	chr17:79227040:-	ONLY_REF_SPLICE	YES	21	259	0.61	0.11	0.2014	0.0876	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10	H4_CENTRAL_NERVOUS_SYSTEM	0.11	0.61	0.289	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ACOT7--HMCN1	18	10	ACOT7	2135	chr1:6453317:-	HMCN1	36912	chr1:185931650:+	ONLY_REF_SPLICE	YES	93	1	0.23	0.97	0.1576	0.0876	ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-,HMCN1->chr1:185703683-186160085:+,hemicentin_1	H4_CENTRAL_NERVOUS_SYSTEM	0.23	0.97	0.2452	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	CCDC57--SLC38A10	17	10	CCDC57	24489	chr17:80109436:-	SLC38A10	57254	chr17:79227035:-	INCL_NON_REF_SPLICE	YES	21	254	0.56	0.1	0.1489	0.0876	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10	H4_CENTRAL_NERVOUS_SYSTEM	0.1	0.56	0.2365	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ACOT7--HMCN1	15	14	ACOT7	6112	chr1:6418886:-	HMCN1	36912	chr1:185931650:+	ONLY_REF_SPLICE	YES	162	1	0.15	0.97	0.1314	0.1226	ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-,HMCN1->chr1:185703683-186160085:+,hemicentin_1	H4_CENTRAL_NERVOUS_SYSTEM	0.15	0.97	0.254	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RRP15--SPATA17	12	3	RRP15	4847	chr1:218480974:+	SPATA17	29371	chr1:218036116:+	ONLY_REF_SPLICE	YES	86	1	0.15	0.94	0.1051	0.0263	RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog,SPATA17->chr1:217804666-218045038:+,spermatogenesis_associated_17	H4_CENTRAL_NERVOUS_SYSTEM	0.15	0.94	0.1314	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF283--CTD-3187F8.11	9	7	ZNF283	5490	chr19:44339744:+	CTD-3187F8.11	17111	chr19:51782008:+	ONLY_REF_SPLICE	YES	6	4	0.73	0.8	0.0788	0.0613	ZNF283->chr19:44331444-44353307:+,zinc_finger_protein_283,CTD-3187F8.11->chr19:51774520-51784488:+	H4_CENTRAL_NERVOUS_SYSTEM	0.73	0.8	0.1401	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	SIPA1L3--ZNF253	9	0	SIPA1L3	1131	chr19:38397998:+	ZNF253	40413	chr19:19989290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0788	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,ZNF253->chr19:19976695-20005483:+,zinc_finger_protein_253	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0788	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	MARS--TMEM120B	1	31	MARS	10946	chr12:57898082:+	TMEM120B	22514	chr12:122186232:+	ONLY_REF_SPLICE	YES	511	48	0.06	0.4	0.0088	0.2715	MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase,TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B	H4_CENTRAL_NERVOUS_SYSTEM	0.06	0.4	0.2803	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	PDE4A--QTRT1	6	9	PDE4A	4765	chr19:10541762:+	QTRT1	27407	chr19:10817978:+	ONLY_REF_SPLICE	YES	8	46	0.65	0.25	0.0525	0.0788	PDE4A->Oncogene{Bushman},chr19:10527449-10580305:+,phosphodiesterase_4A,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	H4_CENTRAL_NERVOUS_SYSTEM	0.25	0.65	0.1313	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC012442.5--TTL	6	6	AC012442.5	1206	chr2:113346822:+	TTL	12921	chr2:113277859:+	ONLY_REF_SPLICE	YES	0	48	1	0.2	0.0525	0.0525	LOCAL_REARRANGEMENT:+:[47301],AC012442.5->chr2:113346617-113372008:+,TTL->Oncogene{Bushman},chr2:113239731-113299316:+,tubulin_tyrosine_ligase	H4_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	DTWD2--RP11-259O2.1	6	0	DTWD2	4795	chr5:118264232:-	RP11-259O2.1	15984	chr5:1958696:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0525	0	DTWD2->DTW_domain_containing_2,chr5:118173017-118324240:-,RP11-259O2.1->chr5:1933977-1959290:+	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	CTD-2528L19.4--RP11-359H18.2	4	0	CTD-2528L19.4	1174	chr19:38209916:-	RP11-359H18.2	10786	chr19:23778924:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0	NUCLCLUST,CTD-2528L19.4->chr19:38180766-38210089:-,RP11-359H18.2->chr19:23778924-23780961:+	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	URB2--HMGB1P26	3	2	URB2	7770	chr1:229773994:+	HMGB1P26	19065	chr1:229841545:-	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0263	0.0175	LOCAL_INVERSION:+:-:[45035],URB2->URB2_ribosome_biogenesis_2_homolog_(S._cerevisiae),chr1:229761981-229795946:+,HMGB1P26->chr1:229840981-229841608:-,high_mobility_group_box_1_pseudogene_26	H4_CENTRAL_NERVOUS_SYSTEM	0.45	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	URB2--HMGB1P26	3	2	URB2	7770	chr1:229773994:+	HMGB1P26	19073	chr1:229841537:-	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0263	0.0175	LOCAL_INVERSION:+:-:[45035],URB2->URB2_ribosome_biogenesis_2_homolog_(S._cerevisiae),chr1:229761981-229795946:+,HMGB1P26->chr1:229840981-229841608:-,high_mobility_group_box_1_pseudogene_26	H4_CENTRAL_NERVOUS_SYSTEM	0.45	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	PPP1R16A--ADCK5	3	1	PPP1R16A	3433	chr8:145715595:+	ADCK5	21507	chr8:145615871:+	ONLY_REF_SPLICE	YES	39	12	0.09	0.25	0.0263	0.0088	LOCAL_REARRANGEMENT:+:[84895],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,ADCK5->aarF_domain_containing_kinase_5,chr8:145596790-145618457:+	H4_CENTRAL_NERVOUS_SYSTEM	0.09	0.25	0.0351	TRUE	0	1	0	1	1	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RNLS--ATAD1	3	1	RNLS	5123	chr10:90332660:-	ATAD1	16984	chr10:89574369:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0.0088	RNLS->chr10:90033621-90344287:-,renalase,_FAD-dependent_amine_oxidase,ATAD1->ATPase_family,_AAA_domain_containing_1,chr10:89511269-89601100:-	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-3L8.3--TBC1D5	3	1	RP11-3L8.3	3272	chr9:12759551:-	TBC1D5	19481	chr3:17665405:-	ONLY_REF_SPLICE	YES	0	16	1	0.2	0.0263	0.0088	RP11-3L8.3->chr9:12700100-12814344:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	H4_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AFAP1--ABLIM2	3	0	AFAP1	6167	chr4:7857193:-	ABLIM2	53571	chr4:8010829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	PDE4A--QTRT1	2	3	PDE4A	3523	chr19:10531760:+	QTRT1	27407	chr19:10817978:+	ONLY_REF_SPLICE	YES	1	46	0.83	0.1	0.0175	0.0263	PDE4A->Oncogene{Bushman},chr19:10527449-10580305:+,phosphodiesterase_4A,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	H4_CENTRAL_NERVOUS_SYSTEM	0.1	0.83	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF484--CENPP	2	3	ZNF484	2248	chr9:95637297:-	CENPP	18818	chr9:95373596:+	ONLY_REF_SPLICE	YES	8	5	0.38	0.5	0.0175	0.0263	ZNF484->chr9:95607874-95640304:-,zinc_finger_protein_484,CENPP->centromere_protein_P,chr9:95087766-95382815:+	H4_CENTRAL_NERVOUS_SYSTEM	0.38	0.5	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF350--UPK1A-AS1	2	2	ZNF350	5084	chr19:52477599:-	UPK1A-AS1	16173	chr19:36159587:-	ONLY_REF_SPLICE	YES	34	0	0.11	1	0.0175	0.0175	ZNF350->chr19:52467596-52490109:-,zinc_finger_protein_350,UPK1A-AS1->UPK1A_antisense_RNA_1,chr19:36158850-36164193:-	H4_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC006115.3--NAPSB	2	1	AC006115.3	8335	chr19:57301446:+	NAPSB	17284	chr19:50839962:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0175	0.0088	AC006115.3->chr19:57202054-57311014:+,NAPSB->chr19:50837053-50848024:-,napsin_B_aspartic_peptidase,_pseudogene	H4_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	DANCR--SKI	2	0	DANCR	1530	chr4:53579126:+	SKI	11602	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RCC1--SNX5	2	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0175	TRUE	0	5	0	11	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	SQSTM1--ENO1	2	0	SQSTM1	4149	chr5:179238682:+	ENO1	26730	chr1:8928116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	SQSTM1->chr5:179233388-179265078:+,sequestosome_1,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF283--CTD-3187F8.11	2	0	ZNF283	5490	chr19:44339744:+	CTD-3187F8.11	18658	chr19:51784088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	ZNF283->chr19:44331444-44353307:+,zinc_finger_protein_283,CTD-3187F8.11->chr19:51774520-51784488:+	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC006115.3--NAPSB	1	1	AC006115.3	8335	chr19:57301446:+	NAPSB	18484	chr19:50838438:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0088	0.0088	AC006115.3->chr19:57202054-57311014:+,NAPSB->chr19:50837053-50848024:-,napsin_B_aspartic_peptidase,_pseudogene	H4_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC012442.5--TTL	1	1	AC012442.5	1206	chr2:113346822:+	TTL	15737	chr2:113286258:+	ONLY_REF_SPLICE	YES	0	50	1	0.04	0.0088	0.0088	LOCAL_REARRANGEMENT:+:[47301],AC012442.5->chr2:113346617-113372008:+,TTL->Oncogene{Bushman},chr2:113239731-113299316:+,tubulin_tyrosine_ligase	H4_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000389
A704_KIDNEY	GBE1--RGMB	29	10	GBE1	1787	chr3:81810526:-	RGMB	27924	chr5:98106302:+	ONLY_REF_SPLICE	YES	79	2	0.33	0.95	0.3717	0.1282	GBE1->chr3:81538850-81811312:-,glucan_(1,4-alpha-),_branching_enzyme_1,RGMB->chr5:98104354-98134347:+,repulsive_guidance_molecule_family_member_b	A704_KIDNEY	0.33	0.95	0.4999	TRUE	0	0	0	1	0	TRUE	ACH-000429
A704_KIDNEY	SORBS1--TCTN3	7	2	SORBS1	1095	chr10:97321077:-	TCTN3	54708	chr10:97443386:-	ONLY_REF_SPLICE	YES	0	74	1	0.11	0.0897	0.0256	SORBS1->chr10:97071528-97321171:-,sorbin_and_SH3_domain_containing_1,TCTN3->chr10:97423158-97453900:-,tectonic_family_member_3	A704_KIDNEY	0.11	1	0.1153	TRUE	0	0	0	1	0	TRUE	ACH-000429
A704_KIDNEY	SPRY1--SPATA5	7	0	SPRY1	2719	chr4:124319668:+	SPATA5	26923	chr4:124177171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0897	0	LOCAL_REARRANGEMENT:+:[77345],SPRY1->chr4:124317950-124324910:+,sprouty_RTK_signaling_antagonist_1,SPATA5->chr4:123844229-124240605:+,spermatogenesis_associated_5	A704_KIDNEY	1	1	0.0897	TRUE	0	0	0	1	0	TRUE	ACH-000429
A704_KIDNEY	FTH1--NPM1	3	0	FTH1	1229	chr11:61734904:-	NPM1	8998	chr5:170814942:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	A704_KIDNEY	1	1	0.0385	TRUE	0	0	0	1	0	TRUE	ACH-000429
A704_KIDNEY	CAPZA2--UBB	2	0	CAPZA2	3371	chr7:116502704:+	UBB	26491	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	A704_KIDNEY	1	1	0.0256	TRUE	0	0	0	5	0	TRUE	ACH-000429
A704_KIDNEY	TMBIM6--SEPT2	2	0	TMBIM6	14894	chr12:50153104:+	SEPT2	37425	chr2:242287549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	TMBIM6->chr12:50101508-50158717:+,transmembrane_BAX_inhibitor_motif_containing_6,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	A704_KIDNEY	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000429
22RV1_PROSTATE	GTDC1--ARHGAP15	74	42	GTDC1	11556	chr2:144966170:-	ARHGAP15	56777	chr2:144244942:+	ONLY_REF_SPLICE	YES	18	0	0.87	1	0.7641	0.4337	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.03%,GTEx_FI:{Nerve=[count:4=pct:2.4],Blood=[count:4=pct:2.3],Heart=[count:1=pct:0.4],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=27;pct=0.31%;dist=Nerve_-_Tibial=7,Whole_Blood=5,Lung=3,Artery_-_Aorta=3,Heart_-_Left_Ventricle=2,Spleen=2,Artery_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Atrial_Appendage=1},GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	22RV1_PROSTATE	0.87	1	1.1978	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	TIMM23--RP11-574K11.28	45	7	TIMM23	6952	chr10:51606988:-	RP11-574K11.28	23058	chr10:75473090:-	ONLY_REF_SPLICE	YES	453	24	0.1	0.68	0.4647	0.0723	TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.28->chr10:75458909-75490245:-	22RV1_PROSTATE	0.1	0.68	0.537	TRUE	0	9	1	1	9	TRUE	ACH-000956
22RV1_PROSTATE	ERBB2IP--RP11-305P14.1	4	6	ERBB2IP	25060	chr5:65350779:+	RP11-305P14.1	40734	chr5:65614097:+	ONLY_REF_SPLICE	YES	101	0	0.09	1	0.0413	0.062	ERBB2IP->chr5:65222303-65378377:+,RP11-305P14.1->chr5:65594296-65618772:+	22RV1_PROSTATE	0.09	1	0.1033	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	GTDC1--ARHGAP15	1	15	GTDC1	11556	chr2:144966170:-	ARHGAP15	57900	chr2:144276835:+	ONLY_REF_SPLICE	YES	18	13	0.47	0.55	0.0103	0.1549	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.03%,GTEx_FI:{Nerve=[count:4=pct:2.4],Blood=[count:4=pct:2.3],Heart=[count:1=pct:0.4],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=27;pct=0.31%;dist=Nerve_-_Tibial=7,Whole_Blood=5,Lung=3,Artery_-_Aorta=3,Heart_-_Left_Ventricle=2,Spleen=2,Artery_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Atrial_Appendage=1},GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	22RV1_PROSTATE	0.47	0.55	0.1652	TRUE	1	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	RP11-114H21.2--CTB-1I21.1	1	14	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	12	0	0.56	1	0.0103	0.1446	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	22RV1_PROSTATE	0.56	1	0.1549	TRUE	0	2	0	12	2	TRUE	ACH-000956
22RV1_PROSTATE	NSMF--PNPLA7	3	2	NSMF	3924	chr9:140350863:-	PNPLA7	38611	chr9:140361925:-	ONLY_REF_SPLICE	YES	97	18	0.05	0.22	0.031	0.0207	LOCAL_REARRANGEMENT:-:[618],NSMF->NMDA_receptor_synaptonuclear_signaling_and_neuronal_migration_factor,chr9:140342022-140353786:-,PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7	22RV1_PROSTATE	0.05	0.22	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	TMED2--SLC35E1	3	0	TMED2	3282	chr12:124071359:+	SLC35E1	20842	chr19:16664511:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2,SLC35E1->chr19:16660642-16683193:-,solute_carrier_family_35_member_E1	22RV1_PROSTATE	1	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	CALM2--PCBP1-AS1	2	0	CALM2	1161	chr2:47403580:-	PCBP1-AS1	18160	chr2:70312756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	CCDC41--PCCA	2	0	CCDC41	5431	chr12:94805473:-	PCCA	34695	chr13:100807233:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	CCDC41->chr12:94700225-94853764:-,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	FRS2--RAB3IP	2	0	FRS2	1182	chr12:69864310:+	RAB3IP	25899	chr12:70149164:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	22RV1_PROSTATE	1	1	0.0207	TRUE	0	2	0	3	1	TRUE	ACH-000956
22RV1_PROSTATE	IMMP2L--NCAPG2	2	0	IMMP2L	4976	chr7:111127294:-	NCAPG2	53097	chr7:158424409:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,NCAPG2->chr7:158424003-158497520:-,non-SMC_condensin_II_complex_subunit_G2	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	NAA25--BCAS3	2	0	NAA25	1307	chr12:112546520:-	BCAS3	45606	chr17:58885365:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	NFYC--SLC25A13	2	0	NFYC	1220	chr1:41157539:+	SLC25A13	31269	chr7:95864229:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	RC3H1--DYM	2	0	RC3H1	2583	chr1:173961893:-	DYM	55750	chr18:46784863:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	RC3H1->chr1:173900352-173991435:-,ring_finger_and_CCCH-type_domains_1,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	RP11-255H23.2--SET	2	0	RP11-255H23.2	1191	chr19:23945936:+	SET	14561	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	RP11-255H23.2->chr19:23945746-24016116:+,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	RP13-16H11.2--PPP2R5C	2	0	RP13-16H11.2	2132	chr10:26957336:-	PPP2R5C	36303	chr14:102375926:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	RP13-16H11.2->chr10:26953135-26965088:-,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	TECPR1--GANAB	2	0	TECPR1	3582	chr7:97875234:-	GANAB	30207	chr11:62407203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
NCIH1650_LUNG	RPL30--C8orf47	314	20	RPL30	2123	chr8:99057575:-	C8orf47	12057	chr8:99101304:+	ONLY_REF_SPLICE	YES	164	6	0.67	0.98	3.1654	0.2016	LOCAL_INVERSION:-:+:[17842],RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,C8orf47->chr8:99076539-99105838:+	NCIH1650_LUNG	0.67	0.98	3.367	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	RPL30--C8orf47	204	142	RPL30	2527	chr8:99057171:-	C8orf47	12057	chr8:99101304:+	ONLY_REF_SPLICE	YES	1287	6	0.21	0.98	2.0565	1.4315	LOCAL_INVERSION:-:+:[17842],RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,C8orf47->chr8:99076539-99105838:+	NCIH1650_LUNG	0.21	0.98	3.488	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	RPL30--C8orf47	1	143	RPL30	2643	chr8:99057055:-	C8orf47	12057	chr8:99101304:+	ONLY_REF_SPLICE	YES	1365	6	0.1	0.96	0.0101	1.4416	LOCAL_INVERSION:-:+:[17842],RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,C8orf47->chr8:99076539-99105838:+	NCIH1650_LUNG	0.1	0.96	1.4517	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	GAPVD1--GLE1	24	23	GAPVD1	1166	chr9:128024238:+	GLE1	44849	chr9:131271155:+	ONLY_REF_SPLICE	YES	41	103	0.53	0.31	0.2419	0.2319	GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	NCIH1650_LUNG	0.31	0.53	0.4738	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	RPL30--C8orf47	26	2	RPL30	2123	chr8:99057575:-	C8orf47	14011	chr8:99105449:+	ONLY_REF_SPLICE	YES	164	236	0.15	0.11	0.2621	0.0202	LOCAL_INVERSION:-:+:[17842],RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,C8orf47->chr8:99076539-99105838:+	NCIH1650_LUNG	0.11	0.15	0.2823	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MKL1--PHF5A	20	16	MKL1	3549	chr22:40948110:-	PHF5A	23840	chr22:41864151:-	ONLY_REF_SPLICE	YES	80	44	0.31	0.45	0.2016	0.1613	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	NCIH1650_LUNG	0.31	0.45	0.3629	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	RPL30--C8orf47	14	35	RPL30	2355	chr8:99057343:-	C8orf47	12057	chr8:99101304:+	INCL_NON_REF_SPLICE	YES	279	6	0.15	0.89	0.1411	0.3528	LOCAL_INVERSION:-:+:[17842],RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,C8orf47->chr8:99076539-99105838:+	NCIH1650_LUNG	0.15	0.89	0.4939	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	GAPVD1--ODF2	14	34	GAPVD1	3365	chr9:128031263:+	ODF2	66330	chr9:131262346:+	ONLY_REF_SPLICE	YES	45	239	0.52	0.17	0.1411	0.3428	GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,ODF2->chr9:131217465-131263571:+,outer_dense_fiber_of_sperm_tails_2	NCIH1650_LUNG	0.17	0.52	0.4839	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	NUP214--NTMT1	16	6	NUP214	15686	chr9:134022971:+	NTMT1	52589	chr9:132394929:+	ONLY_REF_SPLICE	YES	50	205	0.31	0.1	0.1613	0.0605	NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,NTMT1->N-terminal_Xaa-Pro-Lys_N-methyltransferase_1,chr9:132371163-132398209:+	NCIH1650_LUNG	0.1	0.31	0.2218	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	GAPVD1--ODF2	10	22	GAPVD1	1166	chr9:128024238:+	ODF2	66330	chr9:131262346:+	ONLY_REF_SPLICE	YES	41	239	0.44	0.12	0.1008	0.2218	GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,ODF2->chr9:131217465-131263571:+,outer_dense_fiber_of_sperm_tails_2	NCIH1650_LUNG	0.12	0.44	0.3226	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	GAPVD1--GLE1	5	28	GAPVD1	3365	chr9:128031263:+	GLE1	44849	chr9:131271155:+	ONLY_REF_SPLICE	YES	45	103	0.42	0.24	0.0504	0.2823	GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	NCIH1650_LUNG	0.24	0.42	0.3327	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	GAPVD1--ODF2	4	29	GAPVD1	2316	chr9:128025979:+	ODF2	66330	chr9:131262346:+	ONLY_REF_SPLICE	YES	45	239	0.42	0.12	0.0403	0.2923	GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,ODF2->chr9:131217465-131263571:+,outer_dense_fiber_of_sperm_tails_2	NCIH1650_LUNG	0.12	0.42	0.3326	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MKL1--PHF5A	4	21	MKL1	4771	chr22:40929594:-	PHF5A	23840	chr22:41864151:-	ONLY_REF_SPLICE	YES	105	44	0.19	0.36	0.0403	0.2117	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	NCIH1650_LUNG	0.19	0.36	0.252	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MKL1--PHF5A	4	15	MKL1	3549	chr22:40948110:-	PHF5A	24373	chr22:41863618:-	ONLY_REF_SPLICE	YES	80	236	0.19	0.07	0.0403	0.1512	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	NCIH1650_LUNG	0.07	0.19	0.1915	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MKL1--PHF5A	3	19	MKL1	4771	chr22:40929594:-	PHF5A	24373	chr22:41863618:-	ONLY_REF_SPLICE	YES	105	236	0.17	0.09	0.0302	0.1915	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	NCIH1650_LUNG	0.09	0.17	0.2217	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MKL1--PHF5A	1	21	MKL1	5920	chr22:40915468:-	PHF5A	23840	chr22:41864151:-	ONLY_REF_SPLICE	YES	106	44	0.17	0.33	0.0101	0.2117	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	NCIH1650_LUNG	0.17	0.33	0.2218	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	PHTF2--POR	5	4	PHTF2	1167	chr7:77428288:+	POR	39281	chr7:75583307:+	ONLY_REF_SPLICE	YES	63	4	0.12	0.69	0.0504	0.0403	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,POR->chr7:75528518-75616173:+,cytochrome_p450_oxidoreductase	NCIH1650_LUNG	0.12	0.69	0.0907	TRUE	0	1	0	1	1	TRUE	ACH-000035
NCIH1650_LUNG	MKL1--PHF5A	1	19	MKL1	5920	chr22:40915468:-	PHF5A	24373	chr22:41863618:-	ONLY_REF_SPLICE	YES	106	236	0.16	0.08	0.0101	0.1915	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	NCIH1650_LUNG	0.08	0.16	0.2016	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	AES--MTATP6P1	4	0	AES	2887	chr19:3061219:-	MTATP6P1	12247	chr1:569327:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	AES->amino-terminal_enhancer_of_split,chr19:3052908-3063105:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1650_LUNG	1	1	0.0403	TRUE	0	0	0	3	0	TRUE	ACH-000035
NCIH1650_LUNG	TRIP4--KIAA0101	3	0	TRIP4	1217	chr15:64680163:+	KIAA0101	23828	chr15:64673237:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_INVERSION:+:-:[61],TRIP4->chr15:64679947-64747502:+,thyroid_hormone_receptor_interactor_4,KIAA0101->KIAA0101,chr15:64657193-64679886:-	NCIH1650_LUNG	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	RP11-269F21.3--TIFA	2	3	RP11-269F21.3	2258	chr4:112750083:-	TIFA	8941	chr4:113199590:-	ONLY_REF_SPLICE	YES	27	82	0.16	0.06	0.0202	0.0302	RP11-269F21.3->chr4:112748037-112993854:-,TIFA->TRAF_interacting_protein_with_forkhead_associated_domain,chr4:113195698-113207059:-	NCIH1650_LUNG	0.06	0.16	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	SRCIN1--RPL23	2	2	SRCIN1	3683	chr17:36734743:-	RPL23	33516	chr17:37009358:-	ONLY_REF_SPLICE	YES	5	54	0.44	0.07	0.0202	0.0202	SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	NCIH1650_LUNG	0.07	0.44	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	C10orf137--GLS	2	0	C10orf137	11238	chr10:127422752:+	GLS	40871	chr2:191784941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	C10orf137->Oncogene{Bushman},chr10:127408084-127452712:+,GLS->chr2:191745553-191830278:+,glutaminase	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	CAPZB--UBR4	2	0	CAPZB	1137	chr1:19811930:-	UBR4	105513	chr1:19408067:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4	NCIH1650_LUNG	1	1	0.0202	TRUE	0	1	0	1	1	TRUE	ACH-000035
NCIH1650_LUNG	IFIT3--AMBRA1	2	0	IFIT3	1185	chr10:91087835:+	AMBRA1	11789	chr11:46570050:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	IFIT3->chr10:91087651-91100728:+,interferon_induced_protein_with_tetratricopeptide_repeats_3,AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	IFT80--MAN1A2	2	0	IFT80	1735	chr3:160116934:-	MAN1A2	37582	chr1:117944808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	IFT80->chr3:159974774-160117668:-,intraflagellar_transport_80,MAN1A2->chr1:117910071-118071494:+,mannosidase_alpha_class_1A_member_2	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	INTS7--HIBCH	2	0	INTS7	7492	chr1:212179981:-	HIBCH	49164	chr2:191077801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	INTS7->chr1:212113741-212208884:-,integrator_complex_subunit_7,HIBCH->3-hydroxyisobutyryl-CoA_hydrolase,chr2:191054461-191208919:-	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	RECQL5--MRPL38	2	0	RECQL5	12732	chr17:73635949:-	MRPL38	28097	chr17:73900800:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-,MRPL38->chr17:73894724-73905899:-,mitochondrial_ribosomal_protein_L38	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	RIN2--CHMP4B	2	0	RIN2	11845	chr20:19956431:+	CHMP4B	22648	chr20:32436273:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RIN2->Ras_and_Rab_interactor_2,chr20:19867165-19983101:+,CHMP4B->charged_multivesicular_body_protein_4B,chr20:32399110-32442172:+	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	SERF2--GARS	2	0	SERF2	5397	chr15:44085281:+	GARS	33241	chr7:30668176:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,GARS->chr7:30634297-30673649:+,glycyl-tRNA_synthetase	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	SMYD4--PLIN2	2	0	SMYD4	3432	chr17:1731155:-	PLIN2	24962	chr9:19126446:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,PLIN2->chr9:19108373-19149288:-,perilipin_2	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	TGFBR2--AZI2	2	0	TGFBR2	7853	chr3:30715738:+	AZI2	18697	chr3:28382113:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx&tcga_normals:1/3694=0.03%,TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,AZI2->5-azacytidine_induced_2,chr3:28356494-28390618:-	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
U343_CENTRAL_NERVOUS_SYSTEM	TNS3--TBRG4	95	90	TNS3	8632	chr7:47546505:-	TBRG4	50931	chr7:45148886:-	ONLY_REF_SPLICE	YES	270	3	0.41	0.98	1.1826	1.1204	TNS3->chr7:47314752-47622156:-,tensin_3,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	U343_CENTRAL_NERVOUS_SYSTEM	0.41	0.98	2.303	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL5A1--COL15A1	100	0	COL5A1	37761	chr9:137688739:+	COL15A1	101715	chr9:101822186:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2448	0	HGNC_GENEFAM,PROTCLUST,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,COL15A1->chr9:101705461-101833069:+,collagen_type_XV_alpha_1	U343_CENTRAL_NERVOUS_SYSTEM	1	1	1.2448	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CLPX--PARP16	84	55	CLPX	4248	chr15:65471272:-	PARP16	33927	chr15:65527161:-	ONLY_REF_SPLICE	YES	59	4	0.7	0.97	1.0457	0.6847	LOCAL_REARRANGEMENT:-:[49118],CLPX->caseinolytic_mitochondrial_matrix_peptidase_chaperone_subunit,chr15:65440557-65477680:-,PARP16->chr15:65526798-65592956:-,poly(ADP-ribose)_polymerase_family_member_16	U343_CENTRAL_NERVOUS_SYSTEM	0.7	0.97	1.7304	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CLIP2--EIF4H	59	34	CLIP2	2448	chr7:73731997:+	EIF4H	33009	chr7:73609499:+	ONLY_REF_SPLICE	YES	58	1664	0.62	0.05	0.7345	0.4232	LOCAL_REARRANGEMENT:+:[92374],CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+,EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H	U343_CENTRAL_NERVOUS_SYSTEM	0.05	0.62	1.1577	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	ARPC1A--MYH16	29	32	ARPC1A	10109	chr7:98956038:+	MYH16	58398	chr7:98899224:+	ONLY_REF_SPLICE	YES	1621	2	0.04	0.97	0.361	0.3984	LOCAL_REARRANGEMENT:+:[14768],ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	U343_CENTRAL_NERVOUS_SYSTEM	0.04	0.97	0.7594	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	SRM--ERRFI1	30	5	SRM	2225	chr1:11118857:-	ERRFI1	14615	chr1:8064618:-	ONLY_REF_SPLICE	YES	132	0	0.21	1	0.3735	0.0622	SRM->chr1:11114641-11120081:-,spermidine_synthase,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	U343_CENTRAL_NERVOUS_SYSTEM	0.21	1	0.4357	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	VWC2--TNS3	24	11	VWC2	4382	chr7:49842436:+	TNS3	27076	chr7:47520739:-	ONLY_REF_SPLICE	YES	0	266	1	0.12	0.2988	0.1369	VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2,TNS3->chr7:47314752-47622156:-,tensin_3	U343_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.4357	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	C7orf69--BBS9	22	4	C7orf69	1153	chr7:47835041:+	BBS9	37149	chr7:33644477:+	ONLY_REF_SPLICE	YES	5	51	0.84	0.34	0.2739	0.0498	C7orf69->chr7:47834889-47859445:+,chromosome_7_open_reading_frame_69,BBS9->Bardet-Biedl_syndrome_9,chr7:33168856-33645680:+	U343_CENTRAL_NERVOUS_SYSTEM	0.34	0.84	0.3237	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	TNS3--TBRG4	4	72	TNS3	8632	chr7:47546505:-	TBRG4	50975	chr7:45148842:-	ONLY_REF_SPLICE	YES	270	23	0.22	0.77	0.0498	0.8963	TNS3->chr7:47314752-47622156:-,tensin_3,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	U343_CENTRAL_NERVOUS_SYSTEM	0.22	0.77	0.9461	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CTB-113P19.1--FTL	15	2	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1867	0.0249	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	U343_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.2116	TRUE	0	2	0	13	2	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	PAPPA--RP11-264C15.2	10	10	PAPPA	6287	chr9:118974211:+	RP11-264C15.2	38591	chr9:119302719:+	ONLY_REF_SPLICE	YES	6	0	0.77	1	0.1245	0.1245	PAPPA->chr9:118916083-119164601:+,pappalysin_1,RP11-264C15.2->chr9:119266562-119324572:+	U343_CENTRAL_NERVOUS_SYSTEM	0.77	1	0.249	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	XAB2--SAFB2	11	6	XAB2	7623	chr19:7687217:-	SAFB2	17035	chr19:5616497:-	ONLY_REF_SPLICE	YES	46	100	0.27	0.15	0.1369	0.0747	XAB2->XPA_binding_protein_2,chr19:7684411-7694451:-,SAFB2->chr19:5587010-5624057:-,scaffold_attachment_factor_B2	U343_CENTRAL_NERVOUS_SYSTEM	0.15	0.27	0.2116	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	GTF3C1--DCTPP1	5	7	GTF3C1	5124	chr16:27544612:-	DCTPP1	44386	chr16:30440488:-	ONLY_REF_SPLICE	YES	30	52	0.29	0.19	0.0622	0.0871	GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1,DCTPP1->chr16:30434940-30441396:-,dCTP_pyrophosphatase_1	U343_CENTRAL_NERVOUS_SYSTEM	0.19	0.29	0.1493	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CTB-113P19.1--FTL	5	4	CTB-113P19.1	4742	chr5:151066491:+	FTL	9972	chr19:49468589:+	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0622	0.0498	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	U343_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.112	TRUE	0	2	0	13	2	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CTB-113P19.1--FTL	4	3	CTB-113P19.1	4733	chr5:151066482:+	FTL	9963	chr19:49468580:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0498	0.0373	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	U343_CENTRAL_NERVOUS_SYSTEM	0.78	1	0.0871	TRUE	0	2	0	13	2	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	PAPPA--RP11-264C15.2	4	2	PAPPA	6287	chr9:118974211:+	RP11-264C15.2	43994	chr9:119313266:+	ONLY_REF_SPLICE	YES	6	2	0.5	0.75	0.0498	0.0249	PAPPA->chr9:118916083-119164601:+,pappalysin_1,RP11-264C15.2->chr9:119266562-119324572:+	U343_CENTRAL_NERVOUS_SYSTEM	0.5	0.75	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CSNK1D--OGFOD3	3	0	CSNK1D	10594	chr17:80209255:-	OGFOD3	36646	chr17:80350410:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	FAM20C--PSMG3-AS1	3	0	FAM20C	3327	chr7:195732:+	PSMG3-AS1	18723	chr7:1614351:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,PSMG3-AS1->PSMG3_antisense_RNA_1_(head_to_head),chr7:1609709-1629262:+	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	SARS--IRF2BP2	3	0	SARS	1211	chr1:109756750:+	IRF2BP2	16071	chr1:234743598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	SARS->chr1:109756540-109780791:+,seryl-tRNA_synthetase,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	SLC39A1--FAM133DP	3	0	SLC39A1	5770	chr1:153932272:-	FAM133DP	9479	chr2:158236915:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	SLC39A1->chr1:153931575-153940188:-,solute_carrier_family_39_member_1,FAM133DP->chr2:158236236-158236926:-,family_with_sequence_similarity_133_member_D,_pseudogene	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	SRM--ERRFI1	1	5	SRM	2315	chr1:11118767:-	ERRFI1	14615	chr1:8064618:-	ONLY_REF_SPLICE	YES	153	0	0.04	1	0.0124	0.0622	SRM->chr1:11114641-11120081:-,spermidine_synthase,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	U343_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0746	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CTC-260F20.3--SFPQ	2	0	CTC-260F20.3	1106	chr19:19627141:+	SFPQ	25329	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	CTC-260F20.3->chr19:19627036-19646885:+,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	ENAH--EPHX1	2	0	ENAH	10351	chr1:225704898:-	EPHX1	36606	chr1:226016426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Prostate=1},ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila),EPHX1->chr1:225997794-226033260:+,epoxide_hydrolase_1	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	PC--RBM4	2	0	PC	3864	chr11:66719901:-	RBM4	34471	chr11:66433327:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	PTBP2--GLIS3	2	0	PTBP2	2930	chr1:97189150:+	GLIS3	51964	chr9:3898835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	SPDL1--FAM192A	2	0	SPDL1	1256	chr5:169010893:+	FAM192A	25383	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	SPDL1->chr5:169010638-169031782:+,spindle_apparatus_coiled-coil_protein_1,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	RP11-123K19.1--CCDC101	1	1	RP11-123K19.1	1252	chr9:129375728:-	CCDC101	10491	chr16:28592376:+	ONLY_REF_SPLICE	YES	0	23	1	0.08	0.0124	0.0124	RP11-123K19.1->chr9:129351873-129375979:-,CCDC101->chr16:28565236-28603111:+	U343_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.0248	TRUE	0	0	0	2	0	TRUE	ACH-000036
D283MED_CENTRAL_NERVOUS_SYSTEM	OTX2-AS1--TMEM260	24	9	OTX2-AS1	1287	chr14:57280187:+	TMEM260	38298	chr14:57113961:+	ONLY_REF_SPLICE	YES	52	12	0.39	0.73	0.2055	0.077	OTX2-AS1->OTX2_antisense_RNA_1_(head_to_head),chr14:57279901-57618895:+,TMEM260->chr14:56955072-57117324:+,transmembrane_protein_260	D283MED_CENTRAL_NERVOUS_SYSTEM	0.39	0.73	0.2825	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	RP11-408A13.2--NFIB	3	43	RP11-408A13.2	1096	chr9:14531945:-	NFIB	4303	chr9:14398807:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0.3681	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.3938	TRUE	0	0	0	2	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	ENO1--EEF2	6	0	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0514	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0514	TRUE	0	0	0	9	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	GAB2--NARS2	6	0	GAB2	1703	chr11:78128692:-	NARS2	36514	chr11:78154804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0514	0	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[17613],GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0514	TRUE	0	2	0	2	1	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	PABPC1--RPS28	4	0	PABPC1	2022	chr8:101734016:-	RPS28	18700	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0342	TRUE	0	0	0	6	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	RP11-163F15.1--RP11-215N21.1	3	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	16796	chr10:109803082:-	ONLY_REF_SPLICE	YES	28	6	0.12	0.4	0.0257	0.0086	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	D283MED_CENTRAL_NERVOUS_SYSTEM	0.12	0.4	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	LSM14A--ANP32E	3	0	LSM14A	12976	chr19:34718744:+	ANP32E	17768	chr1:150208389:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	RP11-163F15.1--RP11-215N21.1	2	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	YES	28	0	0.1	1	0.0171	0.0086	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	D283MED_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.0257	TRUE	0	5	0	7	5	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	C17orf76-AS1--FAF1	2	0	C17orf76-AS1	1593	chr17:16342728:+	FAF1	24922	chr1:51061888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	C17orf76-AS1->chr17:16342136-16381992:+,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	IFT140--ZC3H7B	2	0	IFT140	21093	chr16:1607936:-	ZC3H7B	48067	chr22:41734317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	IFT140->chr16:1560428-1662111:-,intraflagellar_transport_140,ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	MATR3--PHF20	2	0	MATR3	3802	chr5:138614097:+	PHF20	36194	chr20:34388016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	MATR3->chr5:138609441-138667360:+,matrin_3,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	SDC2--LAPTM4B	2	0	SDC2	1981	chr8:97506559:+	LAPTM4B	20495	chr8:98817581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},SDC2->chr8:97505579-97624000:+,syndecan_2,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	TMEM242--ARID1B	2	0	TMEM242	3035	chr6:157739814:-	ARID1B	18467	chr6:157256600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},TMEM242->chr6:157710418-157744633:-,transmembrane_protein_242,ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0171	TRUE	0	1	0	1	1	TRUE	ACH-000055
HS294T_SKIN	OSBPL5--KCNQ1-AS1	63	4	OSBPL5	2524	chr11:3186446:-	KCNQ1-AS1	32837	chr11:2861672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.755	0.0479	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	HS294T_SKIN	1	1	0.8029	TRUE	0	0	0	2	0	TRUE	ACH-000014
HS294T_SKIN	OSBPL5--KCNQ1-AS1	2	2	OSBPL5	2517	chr11:3186453:-	KCNQ1-AS1	32837	chr11:2861672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0.024	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	HS294T_SKIN	1	1	0.048	TRUE	0	0	0	2	0	TRUE	ACH-000014
HS294T_SKIN	EYA3--ZFAND3	2	1	EYA3	16668	chr1:28319911:-	ZFAND3	33025	chr6:38029369:+	ONLY_REF_SPLICE	YES	16	78	0.16	0.04	0.024	0.012	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3	HS294T_SKIN	0.04	0.16	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000014
HS294T_SKIN	CECR7--ZNF717	2	0	CECR7	4006	chr22:17528316:+	ZNF717	15319	chr3:75791016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,ZNF717->chr3:75758794-75834734:-,zinc_finger_protein_717	HS294T_SKIN	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000014
HS294T_SKIN	FAM20C--AP3D1	2	0	FAM20C	5852	chr7:208976:+	AP3D1	42378	chr19:2102267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	HS294T_SKIN	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000014
HS294T_SKIN	HADHA--EIF3B	2	0	HADHA	7852	chr2:26453060:-	EIF3B	26561	chr7:2400345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	HS294T_SKIN	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000014
HS294T_SKIN	OSBPL5--KCNQ1-AS1	1	4	OSBPL5	2524	chr11:3186446:-	KCNQ1-AS1	31640	chr11:2880169:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.012	0.0479	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	HS294T_SKIN	1	1	0.0599	TRUE	0	0	0	2	0	TRUE	ACH-000014
HS294T_SKIN	RP11-127B16.1--DTNBP1	1	1	RP11-127B16.1	1827	chr6:93432721:-	DTNBP1	9040	chr6:15638035:-	ONLY_REF_SPLICE	YES	0	51	1	0.04	0.012	0.012	RP11-127B16.1->chr6:93432721-93433547:-,DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1	HS294T_SKIN	0.04	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000014
KALS1_CENTRAL_NERVOUS_SYSTEM	PTMA--PTMS	299	3	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	2557	672	0.11	0.31	3.1403	0.0315	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	KALS1_CENTRAL_NERVOUS_SYSTEM	0.11	0.31	3.1718	TRUE	0	0	0	16	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	CECR5--MIAT	139	4	CECR5	2231	chr22:17640016:-	MIAT	21378	chr22:27059280:+	ONLY_REF_SPLICE	YES	5	0	0.97	1	1.4599	0.042	CECR5->Oncogene{Bushman},cat_eye_syndrome_chromosome_region,_candidate_5,chr22:17618401-17646177:-,MIAT->chr22:27042392-27072438:+,myocardial_infarction_associated_transcript_(non-protein_coding)	KALS1_CENTRAL_NERVOUS_SYSTEM	0.97	1	1.5019	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	UBE2L3--CPNE2	81	0	UBE2L3	2429	chr22:21922060:+	CPNE2	15516	chr16:57144620:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.8507	0	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,CPNE2->chr16:57126449-57181878:+,copine_2	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.8507	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	C22orf39--SULT4A1	63	35	C22orf39	11816	chr22:19385515:-	SULT4A1	33579	chr22:44237812:-	ONLY_REF_SPLICE	YES	103	0	0.49	1	0.6617	0.3676	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,SULT4A1->chr22:44220389-44258398:-,sulfotransferase_family_4A_member_1	KALS1_CENTRAL_NERVOUS_SYSTEM	0.49	1	1.0293	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	UBE2L3--CPNE2	20	0	UBE2L3	2429	chr22:21922060:+	CPNE2	17177	chr16:57147200:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2101	0	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,CPNE2->chr16:57126449-57181878:+,copine_2	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2101	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	ADRBK2--GTPBP1	18	7	ADRBK2	15003	chr22:26091181:+	GTPBP1	36424	chr22:39111912:+	ONLY_REF_SPLICE	YES	3	10	0.89	0.71	0.1891	0.0735	ADRBK2->adrenergic,_beta,_receptor_kinase_2,chr22:25960816-26125261:+,GTPBP1->GTP_binding_protein_1,chr22:39101728-39134304:+	KALS1_CENTRAL_NERVOUS_SYSTEM	0.71	0.89	0.2626	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	CPNE2--ACR	17	9	CPNE2	16532	chr16:57161815:+	ACR	27220	chr22:51177699:+	ONLY_REF_SPLICE	YES	97	0	0.21	1	0.1785	0.0945	CPNE2->chr16:57126449-57181878:+,copine_2,ACR->acrosin,chr22:51176624-51183762:+	KALS1_CENTRAL_NERVOUS_SYSTEM	0.21	1	0.273	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	ZNF354A--COL23A1	8	8	ZNF354A	5291	chr5:178152377:-	COL23A1	17133	chr5:177733920:-	ONLY_REF_SPLICE	YES	19	0	0.46	1	0.084	0.084	ZNF354A->chr5:178138593-178157703:-,zinc_finger_protein_354A,COL23A1->chr5:177664619-178017556:-,collagen_type_XXIII_alpha_1	KALS1_CENTRAL_NERVOUS_SYSTEM	0.46	1	0.168	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--IFI27	5	11	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	3955	6	0	0.73	0.0525	0.1155	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	KALS1_CENTRAL_NERVOUS_SYSTEM	0	0.73	0.168	TRUE	0	2	0	13	2	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	POLR2F--RP11-782C8.5	6	5	POLR2F	5486	chr22:38355483:+	RP11-782C8.5	24746	chr1:143233121:-	ONLY_REF_SPLICE	YES	176	0	0.06	1	0.063	0.0525	POLR2F->chr22:38348614-38437922:+,polymerase_(RNA)_II_subunit_F,RP11-782C8.5->chr1:143211628-143240439:-	KALS1_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.1155	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	GTPBP1--GSTT2	6	3	GTPBP1	3246	chr22:39104961:+	GSTT2	23762	chr22:24322327:+	INCL_NON_REF_SPLICE	YES	11	0	0.45	1	0.063	0.0315	GTPBP1->GTP_binding_protein_1,chr22:39101728-39134304:+,GSTT2->chr22:24322339-24326106:+,glutathione_S-transferase_theta_2_(gene/pseudogene)	KALS1_CENTRAL_NERVOUS_SYSTEM	0.45	1	0.0945	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	DNAJB11--RP11-134F2.2	6	0	DNAJB11	6385	chr3:186295589:+	RP11-134F2.2	19849	chr3:186359917:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.063	0	LOCAL_INVERSION:+:-:[44238],DNAJB11->DnaJ_heat_shock_protein_family_(Hsp40)_member_B11,chr3:186285192-186315061:+,RP11-134F2.2->chr3:186359299-186383496:-	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.063	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	AP000350.4--PKM	3	7	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	11	1	0.48	0.0315	0.0735	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	KALS1_CENTRAL_NERVOUS_SYSTEM	0.48	1	0.105	TRUE	0	0	0	14	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	GTPBP1--GSTT2	4	1	GTPBP1	3246	chr22:39104961:+	GSTT2	24574	chr22:24323139:+	ONLY_REF_SPLICE	YES	11	18	0.31	0.22	0.042	0.0105	GTPBP1->GTP_binding_protein_1,chr22:39101728-39134304:+,GSTT2->chr22:24322339-24326106:+,glutathione_S-transferase_theta_2_(gene/pseudogene)	KALS1_CENTRAL_NERVOUS_SYSTEM	0.22	0.31	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	UBE2L3--CPNE2	4	1	UBE2L3	3035	chr22:21922666:+	CPNE2	15516	chr16:57144620:+	ONLY_REF_SPLICE	YES	17	3	0.23	0.62	0.042	0.0105	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,CPNE2->chr16:57126449-57181878:+,copine_2	KALS1_CENTRAL_NERVOUS_SYSTEM	0.23	0.62	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	DNAJB11--RP11-134F2.2	4	0	DNAJB11	5252	chr3:186293726:+	RP11-134F2.2	19849	chr3:186359917:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.042	0	LOCAL_INVERSION:+:-:[44238],DNAJB11->DnaJ_heat_shock_protein_family_(Hsp40)_member_B11,chr3:186285192-186315061:+,RP11-134F2.2->chr3:186359299-186383496:-	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	GTPBP1--GSTT2	4	0	GTPBP1	1425	chr22:39102152:+	GSTT2	24574	chr22:24323139:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.042	0	GTPBP1->GTP_binding_protein_1,chr22:39101728-39134304:+,GSTT2->chr22:24322339-24326106:+,glutathione_S-transferase_theta_2_(gene/pseudogene)	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	ZNF354A--COL23A1	2	8	ZNF354A	5291	chr5:178152377:-	COL23A1	15924	chr5:177950714:-	ONLY_REF_SPLICE	YES	19	0	0.34	1	0.021	0.084	ZNF354A->chr5:178138593-178157703:-,zinc_finger_protein_354A,COL23A1->chr5:177664619-178017556:-,collagen_type_XXIII_alpha_1	KALS1_CENTRAL_NERVOUS_SYSTEM	0.34	1	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	PIM3--C22orf24	3	0	PIM3	1520	chr22:50354680:+	C22orf24	9194	chr22:32334101:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	PIM3->Oncogene{Bushman},Pim-3_proto-oncogene,_serine/threonine_kinase,chr22:50354161-50357728:+,C22orf24->chr22:32329507-32341504:-,chromosome_22_open_reading_frame_24	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	ERGIC2--NPIPB11	2	0	ERGIC2	7282	chr12:29519810:-	NPIPB11	24651	chr16:29405397:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	ERGIC2->ERGIC_and_golgi_2,chr12:29490285-29534122:-,NPIPB11->chr16:29392675-29415350:-,nuclear_pore_complex_interacting_protein_family_member_B11	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	IFT57--GOLGB1	2	0	IFT57	7148	chr3:107910368:-	GOLGB1	21726	chr3:121445888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	IFT57->chr3:107879659-107941417:-,intraflagellar_transport_57,GOLGB1->chr3:121382046-121468602:-,golgin_B1	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	IVNS1ABP--LOXL3	2	0	IVNS1ABP	10586	chr1:185268842:-	LOXL3	20628	chr2:74777475:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein,LOXL3->Oncogene{Bushman},chr2:74759541-74782817:-,lysyl_oxidase_like_3	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	LHFPL2--AP3B1	2	0	LHFPL2	7033	chr5:77928087:-	AP3B1	30357	chr5:77512061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	PRRG1--LANCL3	2	0	PRRG1	4586	chrX:37285253:+	LANCL3	17056	chrX:37514941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	PRRG1->chrX:37208528-37316548:+,proline_rich_and_Gla_domain_1,LANCL3->LanC_like_3,chrX:37430822-37543716:+	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	1	2	0	5	2	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	PTMA--PTMS	2	0	PTMA	6593	chr2:232577226:+	PTMS	14193	chr12:6879558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	16	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	SBF1--RFPL3S	2	0	SBF1	14981	chr22:50893243:-	RFPL3S	26064	chr22:32766928:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	SBF1->SET_binding_factor_1,chr22:50883429-50913454:-,RFPL3S->RFPL3_antisense,chr22:32755893-32778039:-	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	SPIN1--GNAS	2	0	SPIN1	1120	chr9:91003453:+	GNAS	33527	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx&tcga_normals:1/3694=0.03%,SPIN1->chr9:91003334-91093609:+,spindlin_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	1	0	4	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	TGFBR1--MSANTD3	2	0	TGFBR1	2265	chr9:101867584:+	MSANTD3	23232	chr9:103204188:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	TGFBR1->Oncogene{Bushman},chr9:101866320-101916474:+,transforming_growth_factor_beta_receptor_1,MSANTD3->Myb/SANT_DNA_binding_domain_containing_3,chr9:103189438-103213511:+	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	TMEM161B--AMY2B	2	0	TMEM161B	1756	chr5:87564538:-	AMY2B	29706	chr1:104108057:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	TMEM161B->chr5:87485450-87565293:-,transmembrane_protein_161B,AMY2B->amylase,_alpha_2B_(pancreatic),chr1:104096437-104122156:+	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	ULK4--SEMA3C	2	0	ULK4	3791	chr3:41979590:-	SEMA3C	56802	chr7:80458061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4,SEMA3C->chr7:80371854-80551675:-,semaphorin_3C	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	IMMP2L--DOCK4	1	1	IMMP2L	4976	chr7:111127294:-	DOCK4	52051	chr7:111430661:-	ONLY_REF_SPLICE	NO	27	8	0.07	0.2	0.0105	0.0105	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	KALS1_CENTRAL_NERVOUS_SYSTEM	0.07	0.2	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
HCC1143_BREAST	TMEM241--HM13	257	181	TMEM241	17323	chr18:20889644:-	HM13	35387	chr20:30132750:+	ONLY_REF_SPLICE	YES	47	830	0.9	0.35	3.1443	2.2145	{Klijn_CCL:Breast=1},TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	HCC1143_BREAST	0.35	0.9	5.3588	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	FANCD2--MTMR14	155	69	FANCD2	29562	chr3:10123148:+	MTMR14	57066	chr3:9719001:+	ONLY_REF_SPLICE	YES	123	52	0.65	0.81	1.8964	0.8442	FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+,MTMR14->chr3:9691117-9744077:+,myotubularin_related_protein_14	HCC1143_BREAST	0.65	0.81	2.7406	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	FAM168A--RAB6A	25	33	FAM168A	1267	chr11:73308968:-	RAB6A	29632	chr11:73390765:-	ONLY_REF_SPLICE	YES	55	202	0.51	0.22	0.3059	0.4037	LOCAL_REARRANGEMENT:-:[77449],FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	HCC1143_BREAST	0.22	0.51	0.7096	TRUE	0	1	0	2	1	TRUE	ACH-000374
HCC1143_BREAST	MTA1--INF2	30	1	MTA1	1242	chr14:105886400:+	INF2	27021	chr14:105172372:+	ONLY_REF_SPLICE	YES	0	509	1	0.06	0.367	0.0122	MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1,INF2->chr14:105155943-105185942:+,inverted_formin,_FH2_and_WH2_domain_containing	HCC1143_BREAST	0.06	1	0.3792	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	TMEM241--HM13	4	100	TMEM241	17323	chr18:20889644:-	HM13	37771	chr20:30136480:+	ONLY_REF_SPLICE	YES	47	1382	0.69	0.07	0.0489	1.2235	{Klijn_CCL:Breast=1},TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	HCC1143_BREAST	0.07	0.69	1.2724	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	TMEM241--HM13	2	89	TMEM241	17323	chr18:20889644:-	HM13	38123	chr20:30136832:+	ONLY_REF_SPLICE	YES	47	1269	0.66	0.07	0.0245	1.0889	{Klijn_CCL:Breast=1},TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	HCC1143_BREAST	0.07	0.66	1.1134	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	12	15	ZNRD1-AS1	10116	chr6:30002685:-	PPP2R5A	37126	chr1:212502477:+	ONLY_REF_SPLICE	YES	3	137	0.9	0.16	0.1468	0.1835	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.16	0.9	0.3303	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MYO9A--HEXA	12	14	MYO9A	10351	chr15:72300167:-	HEXA	70166	chr15:72654807:-	ONLY_REF_SPLICE	YES	17	363	0.6	0.07	0.1468	0.1713	MYO9A->chr15:72114632-72410918:-,myosin_IXA,HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha	HCC1143_BREAST	0.07	0.6	0.3181	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MYO9A--HEXA	12	9	MYO9A	10351	chr15:72300167:-	HEXA	75093	chr15:72648958:-	ONLY_REF_SPLICE	YES	17	349	0.55	0.06	0.1468	0.1101	MYO9A->chr15:72114632-72410918:-,myosin_IXA,HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha	HCC1143_BREAST	0.06	0.55	0.2569	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	COL6A2--PRDM15	14	0	COL6A2	1077	chr21:47518087:+	PRDM15	43887	chr21:43243805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1713	0	COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,PRDM15->PR_domain_15,chr21:43218385-43299591:-	HCC1143_BREAST	1	1	0.1713	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	PPP1R12B--LGR6	11	3	PPP1R12B	18035	chr1:202418299:+	LGR6	54334	chr1:202194551:+	ONLY_REF_SPLICE	YES	13	0	0.52	1	0.1346	0.0367	LOCAL_REARRANGEMENT:+:[28918],PPP1R12B->chr1:202317827-202561834:+,protein_phosphatase_1_regulatory_subunit_12B,LGR6->Oncogene{Bushman},chr1:202163029-202288909:+,leucine-rich_repeat_containing_G_protein-coupled_receptor_6	HCC1143_BREAST	0.52	1	0.1713	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	HELZ--HECW1	9	9	HELZ	38385	chr17:65103285:-	HECW1	78571	chr7:43519209:+	ONLY_REF_SPLICE	YES	43	1	0.3	0.95	0.1101	0.1101	{Klijn_CCL:Breast=1},HELZ->chr17:65066554-65242105:-,helicase_with_zinc_finger,HECW1->HECT,_C2_and_WW_domain_containing_E3_ubiquitin_protein_ligase_1,chr7:43152198-43605600:+	HCC1143_BREAST	0.3	0.95	0.2202	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	PRDM15--EPHB1	8	0	PRDM15	1213	chr21:43299379:-	EPHB1	72178	chr3:134967158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0979	0	PRDM15->PR_domain_15,chr21:43218385-43299591:-,EPHB1->ArcherDX_panel,EPH_receptor_B1,FoundationOne_panel,chr3:134316643-134979309:+	HCC1143_BREAST	1	1	0.0979	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MIPEP--FAM65B	7	2	MIPEP	19046	chr13:24380089:-	FAM65B	30906	chr6:24876045:-	ONLY_REF_SPLICE	YES	26	0	0.26	1	0.0856	0.0245	MIPEP->chr13:24304328-24463558:-,mitochondrial_intermediate_peptidase,FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B	HCC1143_BREAST	0.26	1	0.1101	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	LINC00511--RMDN2	5	6	LINC00511	8867	chr17:70588342:-	RMDN2	34557	chr2:38156405:+	ONLY_REF_SPLICE	YES	262	18	0.04	0.38	0.0612	0.0734	LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,RMDN2->chr2:38150330-38294285:+,regulator_of_microtubule_dynamics_2	HCC1143_BREAST	0.04	0.38	0.1346	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	FANCD2--MTMR14	1	21	FANCD2	29562	chr3:10123148:+	MTMR14	58808	chr3:9724862:+	ONLY_REF_SPLICE	YES	123	156	0.15	0.12	0.0122	0.2569	FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+,MTMR14->chr3:9691117-9744077:+,myotubularin_related_protein_14	HCC1143_BREAST	0.12	0.15	0.2691	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	2	16	ZNRD1-AS1	10116	chr6:30002685:-	PPP2R5A	33789	chr1:212480125:+	ONLY_REF_SPLICE	YES	3	136	0.86	0.12	0.0245	0.1958	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.12	0.86	0.2203	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	5	4	ZNRD1-AS1	4526	chr6:30025892:-	PPP2R5A	37126	chr1:212502477:+	ONLY_REF_SPLICE	YES	17	137	0.35	0.06	0.0612	0.0489	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.06	0.35	0.1101	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	CPSF6--CNOT2	4	1	CPSF6	11046	chr12:69656342:+	CNOT2	49978	chr12:70747609:+	ONLY_REF_SPLICE	YES	177	167	0.03	0.03	0.0489	0.0122	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+	HCC1143_BREAST	0.03	0.03	0.0611	TRUE	0	2	0	2	2	TRUE	ACH-000374
HCC1143_BREAST	MYH9--PLCB1	4	0	MYH9	31547	chr22:36689867:-	PLCB1	84031	chr20:8862258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	HCC1143_BREAST	1	1	0.0489	TRUE	0	0	0	2	0	TRUE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	2	5	ZNRD1-AS1	4526	chr6:30025892:-	PPP2R5A	33789	chr1:212480125:+	ONLY_REF_SPLICE	YES	17	136	0.29	0.05	0.0245	0.0612	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.05	0.29	0.0857	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	LARS--CEP120	3	0	LARS	15438	chr5:145529185:-	CEP120	55719	chr5:122708466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase,CEP120->centrosomal_protein_120,chr5:122680579-122759286:-	HCC1143_BREAST	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	PRDM15--EPHB1	3	0	PRDM15	1209	chr21:43299383:-	EPHB1	72178	chr3:134967158:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	PRDM15->PR_domain_15,chr21:43218385-43299591:-,EPHB1->ArcherDX_panel,EPH_receptor_B1,FoundationOne_panel,chr3:134316643-134979309:+	HCC1143_BREAST	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	USP25--CHODL-AS1	2	4	USP25	27145	chr21:17242466:+	CHODL-AS1	37480	chr21:19212970:-	ONLY_REF_SPLICE	YES	76	0	0.07	1	0.0245	0.0489	USP25->chr21:17102344-17252377:+,ubiquitin_specific_peptidase_25,CHODL-AS1->CHODL_antisense_RNA_1,chr21:19207333-19257925:-	HCC1143_BREAST	0.07	1	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	1	6	ZNRD1-AS1	9108	chr6:30003693:-	PPP2R5A	33789	chr1:212480125:+	ONLY_REF_SPLICE	YES	13	136	0.35	0.05	0.0122	0.0734	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.05	0.35	0.0856	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	1	5	ZNRD1-AS1	10116	chr6:30002685:-	PPP2R5A	38323	chr1:212506839:+	ONLY_REF_SPLICE	NO	3	154	0.67	0.04	0.0122	0.0612	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.04	0.67	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	C16orf52--FKBP10	2	0	C16orf52	4277	chr16:22087020:+	FKBP10	20979	chr17:39977199:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	C16orf52->chr16:22018959-22098855:+,chromosome_16_open_reading_frame_52,FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	C17orf76-AS1--SKI	2	0	C17orf76-AS1	1593	chr17:16342728:+	SKI	17511	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	C17orf76-AS1->chr17:16342136-16381992:+,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	2	0	TRUE	ACH-000374
HCC1143_BREAST	CPSF6--HP1BP3	2	0	CPSF6	11046	chr12:69656342:+	HP1BP3	26902	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	DOCK7--ROR1	2	0	DOCK7	33386	chr1:62993822:-	ROR1	59819	chr1:64474977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	DOCK7->chr1:62920399-63153969:-,dedicator_of_cytokinesis_7,ROR1->chr1:64239693-64647181:+,receptor_tyrosine_kinase-like_orphan_receptor_1	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	ERAP1--COA5	2	0	ERAP1	20099	chr5:96112108:-	COA5	31331	chr2:99220654:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	ERAP1->chr5:96096521-96143803:-,endoplasmic_reticulum_aminopeptidase_1,COA5->chr2:99215773-99224978:-,cytochrome_c_oxidase_assembly_factor_5	HCC1143_BREAST	1	1	0.0245	TRUE	0	1	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	IP6K1--EEF1D	2	0	IP6K1	1189	chr3:49823787:-	EEF1D	25797	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MPI--ITGB3BP	2	0	MPI	1197	chr15:75182542:+	ITGB3BP	24051	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	MPI->chr15:75182346-75191798:+,mannose_phosphate_isomerase,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	PACSIN3--CTSV	2	0	PACSIN3	1095	chr11:47207900:-	CTSV	16158	chr9:99797975:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	PACSIN3->chr11:47199076-47207994:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_3,CTSV->cathepsin_V,chr9:99794940-99801925:-	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	PARP4--MFAP3	2	0	PARP4	1105	chr13:25086844:-	MFAP3	40742	chr5:153429117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	PARP4->chr13:24995064-25086948:-,poly(ADP-ribose)_polymerase_family_member_4,MFAP3->chr5:153418466-153600038:+,microfibrillar_associated_protein_3	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	PLXNB2--PPP6R2	2	0	PLXNB2	1075	chr22:50745982:-	PPP6R2	38191	chr22:50873395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[35677],PLXNB2->chr22:50713408-50746056:-,plexin_B2,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	HCC1143_BREAST	1	1	0.0245	TRUE	1	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	RP11-166P13.3--CTTN	2	0	RP11-166P13.3	1185	chr17:55162201:-	CTTN	7510	chr11:70251371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	RP11-166P13.3->chr17:55155659-55162385:-,CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	SBF2--STT3B	2	0	SBF2	19870	chr11:9983504:-	STT3B	77500	chr3:31667446:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	TRAM1--LACTB2	2	0	TRAM1	8875	chr8:71499130:-	LACTB2	19546	chr8:71556478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:-:[26931],TRAM1->chr8:71485677-71520622:-,translocation_associated_membrane_protein_1,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	HCC1143_BREAST	1	1	0.0245	TRUE	0	1	0	2	0	TRUE	ACH-000374
HCC1143_BREAST	COL4A2--RP11-143A22.1	1	3	COL4A2	5250	chr13:111009899:+	RP11-143A22.1	50727	chr6:58488888:+	ONLY_REF_SPLICE	YES	102	0	0.04	1	0.0122	0.0367	COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2,RP11-143A22.1->chr6:58488888-58513860:+	HCC1143_BREAST	0.04	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	VAV2--RXRA	1	1	VAV2	1530	chr9:136857197:-	RXRA	45623	chr9:137293478:+	ONLY_REF_SPLICE	YES	45	1	0.04	0.67	0.0122	0.0122	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,RXRA->chr9:137208944-137332431:+,retinoid_X_receptor_alpha	HCC1143_BREAST	0.04	0.67	0.0244	TRUE	0	1	0	1	0	TRUE	ACH-000374
SNU398_LIVER	RNF40--RP11-146F11.1	704	272	RNF40	6132	chr16:30778197:+	RP11-146F11.1	17835	chr16:30709252:-	ONLY_REF_SPLICE	YES	427	7	0.7	0.99	5.7524	2.2225	LOCAL_INVERSION:+:-:[62687],RNF40->chr16:30773066-30787628:+,ring_finger_protein_40,RP11-146F11.1->chr16:30709030-30710379:-	SNU398_LIVER	0.7	0.99	7.9749	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF121--SIN3B	253	0	ZNF121	1073	chr19:9695137:-	SIN3B	26788	chr19:16980271:+	ONLY_REF_SPLICE	YES	0	0	1	1	2.0673	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,SIN3B->SIN3_transcription_regulator_family_member_B,chr19:16940211-16991164:+	SNU398_LIVER	1	1	2.0673	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	RNF40--RP11-146F11.1	76	298	RNF40	7048	chr16:30779113:+	RP11-146F11.1	17360	chr16:30709727:-	INCL_NON_REF_SPLICE	YES	477	4	0.44	0.99	0.621	2.435	LOCAL_INVERSION:+:-:[62687],RNF40->chr16:30773066-30787628:+,ring_finger_protein_40,RP11-146F11.1->chr16:30709030-30710379:-	SNU398_LIVER	0.44	0.99	3.056	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	RNF40--RP11-146F11.1	114	140	RNF40	6065	chr16:30778130:+	RP11-146F11.1	17835	chr16:30709252:-	INCL_NON_REF_SPLICE	YES	263	7	0.49	0.97	0.9315	1.1439	LOCAL_INVERSION:+:-:[62687],RNF40->chr16:30773066-30787628:+,ring_finger_protein_40,RP11-146F11.1->chr16:30709030-30710379:-	SNU398_LIVER	0.49	0.97	2.0754	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	PARD3--PLEKHA2	111	28	PARD3	2552	chr10:34985246:-	PLEKHA2	49215	chr8:38826110:+	ONLY_REF_SPLICE	YES	49	1	0.74	0.99	0.907	0.2288	{Klijn_CCL:Liver=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,PLEKHA2->Oncogene{Bushman},chr8:38758753-38831428:+,pleckstrin_homology_domain_containing_A2	SNU398_LIVER	0.74	0.99	1.1358	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	77	40	ZNF680	4236	chr7:64004085:-	SNAP91	31549	chr6:84320396:-	ONLY_REF_SPLICE	YES	29	4	0.8	0.97	0.6292	0.3268	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.8	0.97	0.956	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	RNF40--RP11-146F11.1	7	275	RNF40	6132	chr16:30778197:+	RP11-146F11.1	17451	chr16:30709636:-	INCL_NON_REF_SPLICE	YES	427	16	0.4	0.95	0.0572	2.247	LOCAL_INVERSION:+:-:[62687],RNF40->chr16:30773066-30787628:+,ring_finger_protein_40,RP11-146F11.1->chr16:30709030-30710379:-	SNU398_LIVER	0.4	0.95	2.3042	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	RP11-867G2.6--PABPC1	72	0	RP11-867G2.6	3092	chr11:94381554:+	PABPC1	10856	chr8:101730508:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5883	0	RP11-867G2.6->chr11:94375073-94384797:+,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	SNU398_LIVER	1	1	0.5883	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	KMT2B--DMKN	60	32	KMT2B	16726	chr19:36224773:+	DMKN	24862	chr19:36004084:-	INCL_NON_REF_SPLICE	YES	58	8	0.61	0.92	0.4903	0.2615	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},KMT2B->chr19:36208921-36229779:+,lysine_methyltransferase_2B,DMKN->chr19:35988122-36004560:-,dermokine	SNU398_LIVER	0.61	0.92	0.7518	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	FAM32A--AC006548.19	55	7	FAM32A	1386	chr19:16296576:+	AC006548.19	8922	chr22:17378335:+	ONLY_REF_SPLICE	YES	402	0	0.13	1	0.4494	0.0572	FAM32A->chr19:16296191-16302857:+,family_with_sequence_similarity_32_member_A,AC006548.19->chr22:17378335-17378436:+	SNU398_LIVER	0.13	1	0.5066	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	33	47	ZNF680	4236	chr7:64004085:-	SNAP91	28706	chr6:84326758:-	ONLY_REF_SPLICE	YES	29	3	0.73	0.96	0.2696	0.384	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.73	0.96	0.6536	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	LINC00662--CIB3	39	12	LINC00662	1941	chr19:28283908:-	CIB3	27068	chr19:16275724:-	ONLY_REF_SPLICE	YES	74	10	0.41	0.84	0.3187	0.0981	LINC00662->chr19:28175488-28284848:-,long_intergenic_non-protein_coding_RNA_662,CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	SNU398_LIVER	0.41	0.84	0.4168	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	33	29	ZNF680	1182	chr7:64023303:-	SNAP91	31549	chr6:84320396:-	ONLY_REF_SPLICE	YES	54	4	0.53	0.94	0.2696	0.237	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.53	0.94	0.5066	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	KDM4C--PARD6G	31	10	KDM4C	27495	chr9:7015929:+	PARD6G	45210	chr18:77960815:-	ONLY_REF_SPLICE	YES	16	0	0.72	1	0.2533	0.0817	{Klijn_CCL:Liver=1},KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,PARD6G->chr18:77915115-78005429:-,par-6_family_cell_polarity_regulator_gamma	SNU398_LIVER	0.72	1	0.335	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF121--SIN3B	25	31	ZNF121	1348	chr19:9694862:-	SIN3B	26788	chr19:16980271:+	ONLY_REF_SPLICE	YES	7	44	0.89	0.56	0.2043	0.2533	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,SIN3B->SIN3_transcription_regulator_family_member_B,chr19:16940211-16991164:+	SNU398_LIVER	0.56	0.89	0.4576	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	PIP5K1C--NFIC	30	10	PIP5K1C	18119	chr19:3638882:-	NFIC	29982	chr19:3381710:+	ONLY_REF_SPLICE	YES	7	9	0.85	0.82	0.2451	0.0817	{Klijn_CCL:Liver=1},PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma,NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C	SNU398_LIVER	0.82	0.85	0.3268	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	MSANTD2--AHCY	22	22	MSANTD2	8060	chr11:124636579:-	AHCY	12578	chr20:32891162:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.1798	0.1798	MSANTD2->Myb/SANT_DNA_binding_domain_containing_2,chr11:124636394-124670569:-,AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-	SNU398_LIVER	0.92	1	0.3596	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	AP003900.6--RP11-435B5.4	21	0	AP003900.6	1122	chr21:11169841:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1716	0	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	SNU398_LIVER	1	1	0.1716	TRUE	1	3	0	6	3	TRUE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	9	34	ZNF680	1182	chr7:64023303:-	SNAP91	28706	chr6:84326758:-	ONLY_REF_SPLICE	YES	54	3	0.44	0.93	0.0735	0.2778	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.44	0.93	0.3513	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	LINC00662--CIB3	8	21	LINC00662	1941	chr19:28283908:-	CIB3	24827	chr19:16280533:-	ONLY_REF_SPLICE	YES	74	0	0.28	1	0.0654	0.1716	LINC00662->chr19:28175488-28284848:-,long_intergenic_non-protein_coding_RNA_662,CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	SNU398_LIVER	0.28	1	0.237	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	LINC00662--CIB3	8	21	LINC00662	1941	chr19:28283908:-	CIB3	24808	chr19:16280552:-	ONLY_REF_SPLICE	YES	74	0	0.28	1	0.0654	0.1716	LINC00662->chr19:28175488-28284848:-,long_intergenic_non-protein_coding_RNA_662,CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	SNU398_LIVER	0.28	1	0.237	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	PARD3--PLEKHA2	10	13	PARD3	1450	chr10:35103804:-	PLEKHA2	49215	chr8:38826110:+	ONLY_REF_SPLICE	YES	28	1	0.45	0.96	0.0817	0.1062	{Klijn_CCL:Liver=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,PLEKHA2->Oncogene{Bushman},chr8:38758753-38831428:+,pleckstrin_homology_domain_containing_A2	SNU398_LIVER	0.45	0.96	0.1879	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	LINC00662--CIB3	7	17	LINC00662	1941	chr19:28283908:-	CIB3	25920	chr19:16279095:-	ONLY_REF_SPLICE	YES	74	8	0.24	0.75	0.0572	0.1389	LINC00662->chr19:28175488-28284848:-,long_intergenic_non-protein_coding_RNA_662,CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	SNU398_LIVER	0.24	0.75	0.1961	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	LINC00662--CIB3	5	21	LINC00662	1941	chr19:28283908:-	CIB3	23773	chr19:16284007:-	ONLY_REF_SPLICE	YES	74	0	0.26	1	0.0409	0.1716	LINC00662->chr19:28175488-28284848:-,long_intergenic_non-protein_coding_RNA_662,CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	SNU398_LIVER	0.26	1	0.2125	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	4	24	ZNF680	4236	chr7:64004085:-	SNAP91	33687	chr6:84315522:-	ONLY_REF_SPLICE	YES	29	17	0.49	0.62	0.0327	0.1961	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.49	0.62	0.2288	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	2	29	ZNF680	2510	chr7:64021324:-	SNAP91	31549	chr6:84320396:-	ONLY_REF_SPLICE	YES	45	4	0.41	0.89	0.0163	0.237	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.41	0.89	0.2533	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	1	19	ZNF680	1182	chr7:64023303:-	SNAP91	33687	chr6:84315522:-	ONLY_REF_SPLICE	YES	54	17	0.27	0.54	0.0082	0.1552	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.27	0.54	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	AP003900.6--RP11-435B5.4	4	1	AP003900.6	3299	chr21:11174002:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	23	2	0.18	0.71	0.0327	0.0082	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	SNU398_LIVER	0.18	0.71	0.0409	TRUE	0	1	0	4	1	TRUE	ACH-000221
SNU398_LIVER	KMT2B--DMKN	1	13	KMT2B	16726	chr19:36224773:+	DMKN	25254	chr19:36003692:-	ONLY_REF_SPLICE	NO	58	16	0.19	0.47	0.0082	0.1062	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},KMT2B->chr19:36208921-36229779:+,lysine_methyltransferase_2B,DMKN->chr19:35988122-36004560:-,dermokine	SNU398_LIVER	0.19	0.47	0.1144	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	EPS15L1--CTD-2562J15.4	3	0	EPS15L1	1176	chr19:16582721:-	CTD-2562J15.4	35051	chr19:16297326:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0245	0	EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1,CTD-2562J15.4->chr19:16297087-16300269:-	SNU398_LIVER	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	SLIT2--EEF1D	3	0	SLIT2	4960	chr4:20259562:+	EEF1D	60939	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	SLIT2->ArcherDX_panel,FoundationOne_panel,chr4:20254883-20622184:+,slit_guidance_ligand_2,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SNU398_LIVER	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	CCDC171--PSMG3	2	0	CCDC171	8643	chr9:15623411:+	PSMG3	58356	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	GNAT3--DNM3OS	2	0	GNAT3	1212	chr7:80141125:-	DNM3OS	11706	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GNAT3->G_protein_subunit_alpha_transducin_3,chr7:80087987-80141336:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	HSPBAP1--ARL13B	2	0	HSPBAP1	1208	chr3:122512464:-	ARL13B	27401	chr3:93768250:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	HSPBAP1->HSPB1_associated_protein_1,Oncogene{Bushman},chr3:122458846-122512671:-,ARL13B->ADP_ribosylation_factor_like_GTPase_13B,chr3:93698983-93774512:+	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	RP11-435B5.4--DCTD	2	0	RP11-435B5.4	2843	chr1:143465380:-	DCTD	21959	chr4:183836728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	RP11-435B5.4->chr1:143354963-143467632:-,DCTD->chr4:183811213-183839089:-,dCMP_deaminase	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	RP11-548L20.1--STK35	2	0	RP11-548L20.1	2265	chr4:34260709:-	STK35	13614	chr20:2124430:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	RP11-548L20.1->chr4:34122516-34271369:-,STK35->chr20:2082257-2157684:+,serine/threonine_kinase_35	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	TENM3--CMTM1	2	0	TENM3	10440	chr4:183550042:+	CMTM1	50027	chr16:66611007:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	TENM3->chr4:183065140-183724177:+,teneurin_transmembrane_protein_3,CMTM1->CKLF_like_MARVEL_transmembrane_domain_containing_1,chr16:66600294-66613040:+	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	UBE2D2--ETF1	2	0	UBE2D2	2832	chr5:138941400:+	ETF1	16749	chr5:137854556:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF121--SIN3B	2	0	ZNF121	1073	chr19:9695137:-	SIN3B	28404	chr19:16982040:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,SIN3B->SIN3_transcription_regulator_family_member_B,chr19:16940211-16991164:+	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF804A--FAM171B	2	0	ZNF804A	1705	chr2:185463797:+	FAM171B	16618	chr2:187615861:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	ZNF804A->chr2:185463093-185804219:+,zinc_finger_protein_804A,FAM171B->chr2:187558698-187630685:+,family_with_sequence_similarity_171_member_B	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU886_LIVER	IGHMBP2--RP11-757G1.5	26	8	IGHMBP2	19223	chr11:68707239:+	RP11-757G1.5	23920	chr11:68709455:-	INCL_NON_REF_SPLICE	YES	64	0	0.35	1	0.1969	0.0606	LOCAL_INVERSION:+:-:[901],IGHMBP2->chr11:68671310-68708070:+,immunoglobulin_mu_binding_protein_2,RP11-757G1.5->chr11:68708971-68710320:-	SNU886_LIVER	0.35	1	0.2575	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	IGHMBP2--RP11-757G1.5	5	7	IGHMBP2	19223	chr11:68707239:+	RP11-757G1.5	23925	chr11:68709450:-	INCL_NON_REF_SPLICE	YES	64	3	0.16	0.8	0.0379	0.053	LOCAL_INVERSION:+:-:[901],IGHMBP2->chr11:68671310-68708070:+,immunoglobulin_mu_binding_protein_2,RP11-757G1.5->chr11:68708971-68710320:-	SNU886_LIVER	0.16	0.8	0.0909	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	IGHMBP2--RP11-757G1.5	5	3	IGHMBP2	19223	chr11:68707239:+	RP11-757G1.5	23962	chr11:68709413:-	INCL_NON_REF_SPLICE	YES	64	5	0.11	0.62	0.0379	0.0227	LOCAL_INVERSION:+:-:[901],IGHMBP2->chr11:68671310-68708070:+,immunoglobulin_mu_binding_protein_2,RP11-757G1.5->chr11:68708971-68710320:-	SNU886_LIVER	0.11	0.62	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	AC016629.8--HNRNPUL1	2	0	AC016629.8	1281	chr19:59070776:+	HNRNPUL1	14458	chr19:41774128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	AC016629.8->chr19:59070496-59086164:+,HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	AGAP1--GCA	2	0	AGAP1	14318	chr2:236715975:+	GCA	43887	chr2:163204088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,GCA->chr2:163175350-163228105:+,grancalcin	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	AGAP3--KLF11	2	0	AGAP3	12339	chr7:150817832:+	KLF11	32917	chr2:10186277:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	AGAP3->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_3,chr7:150782918-150841523:+,KLF11->Kruppel-like_factor_11,chr2:10182976-10194963:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	CALM2--FAM207A	2	0	CALM2	1161	chr2:47403580:-	FAM207A	18448	chr21:46380015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	CDC25B--PPM1B	2	0	CDC25B	1209	chr20:3767786:+	PPM1B	18898	chr2:44436349:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	CDC25B->Oncogene{Bushman},cell_division_cycle_25B,chr20:3767578-3786762:+,PPM1B->chr2:44395108-44471523:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1B	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	COL4A1--ARHGEF7	2	0	COL4A1	1206	chr13:110959291:-	ARHGEF7	65932	chr13:111919895:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1,ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	DDX39B--FTSJ1	2	0	DDX39B	9529	chr6:31500557:-	FTSJ1	21954	chrX:48344124:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-,FTSJ1->FtsJ_RNA_methyltransferase_homolog_1_(E._coli),chrX:48334541-48344752:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	DGCR14--SQSTM1	2	0	DGCR14	2985	chr22:19130051:-	SQSTM1	30727	chr5:179263436:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	DGCR14->DiGeorge_syndrome_critical_region_gene_14,chr22:19117792-19132197:-,SQSTM1->chr5:179233388-179265078:+,sequestosome_1	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	DMRTA1--RP11-399D6.2	2	0	DMRTA1	1892	chr9:22447731:+	RP11-399D6.2	11667	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+,RP11-399D6.2->chr9:22646199-22824212:+	SNU886_LIVER	1	1	0.0151	TRUE	0	1	0	4	1	TRUE	ACH-000316
SNU886_LIVER	DNMT1--MKI67	2	0	DNMT1	10483	chr19:10287968:-	MKI67	45191	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	DSE--UBR2	2	0	DSE	2645	chr6:116580130:+	UBR2	29286	chr6:42559889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,UBR2->chr6:42531800-42661242:+,ubiquitin_protein_ligase_E3_component_n-recognin_2	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	SNU886_LIVER	1	1	0.0151	TRUE	0	6	0	16	3	TRUE	ACH-000316
SNU886_LIVER	HIATL1--HABP4	2	0	HIATL1	4664	chr9:97200810:+	HABP4	24671	chr9:99246744:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	HIATL1->chr9:97136833-97223324:+,HABP4->chr9:99212483-99253618:+,hyaluronan_binding_protein_4	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	HNRNPLL--XPO1	2	0	HNRNPLL	4397	chr2:38818672:-	XPO1	24888	chr2:61761038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	LINC00963--PPP2R4	2	0	LINC00963	2938	chr9:132251578:+	PPP2R4	39837	chr9:131904724:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	LINC00963->chr9:132245730-132275947:+,long_intergenic_non-protein_coding_RNA_963,PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	LINC01014--CCDC132	2	0	LINC01014	1175	chr3:178137163:+	CCDC132	31332	chr7:92952923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,CCDC132->chr7:92861653-92988338:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	MIR181A1HG--KIAA0408	2	0	MIR181A1HG	1204	chr1:198906355:-	KIAA0408	17693	chr6:127765427:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	MIR181A1HG->MIR181A1_host_gene,chr1:198776622-198906558:-,KIAA0408->KIAA0408,chr6:127761488-127780536:-	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	MVD--AP3D1	2	0	MVD	1151	chr16:88729419:-	AP3D1	17139	chr19:2138713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	MVD->chr16:88718343-88729569:-,mevalonate_diphosphate_decarboxylase,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	NUDCD1--PVT1	2	0	NUDCD1	1493	chr8:110346122:-	PVT1	40960	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	NUDCD1->NudC_domain_containing_1,chr8:110253148-110346614:-,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	NUP85--IPO7	2	0	NUP85	1136	chr17:73201889:+	IPO7	25943	chr11:9430033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	NUP85->chr17:73201754-73231853:+,nucleoporin_85,IPO7->chr11:9406169-9469673:+,importin_7	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	PLCXD2--TAB2	2	0	PLCXD2	1733	chr3:111394255:+	TAB2	24384	chr6:149699154:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	PLCXD2->chr3:111393523-111565294:+,phosphatidylinositol_specific_phospholipase_C_X_domain_containing_2,TAB2->TGF-beta_activated_kinase_1/MAP3K7_binding_protein_2,chr6:149539777-149732749:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	PNISR--MSH3	2	0	PNISR	1117	chr6:99873091:-	MSH3	41668	chr5:80083384:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	PTPDC1--ENAH	2	0	PTPDC1	1334	chr9:96793409:+	ENAH	21565	chr1:225755116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	PTPDC1->chr9:96793076-96872138:+,protein_tyrosine_phosphatase_domain_containing_1,ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila)	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	PXMP2--ANKLE2	2	0	PXMP2	2662	chr12:133266962:+	ANKLE2	21143	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	LOCAL_INVERSION:+:-:[4978],PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	SNU886_LIVER	1	1	0.0151	TRUE	0	1	0	4	0	TRUE	ACH-000316
SNU886_LIVER	RAB8B--ANXA2	2	0	RAB8B	1280	chr15:63481947:+	ANXA2	29428	chr15:60678285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},{Klijn_CCL:Urinary_Bladder=1},RAB8B->RAB8B,_member_RAS_oncogene_family,chr15:63481668-63559981:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	2	0	TRUE	ACH-000316
SNU886_LIVER	RCC1--QKI	2	0	RCC1	2175	chr1:28834672:+	QKI	29508	chr6:163983014:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	RNF126--BSG	2	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	SNU886_LIVER	1	1	0.0151	TRUE	0	2	0	12	0	TRUE	ACH-000316
SNU886_LIVER	SLC25A17--ST13	2	0	SLC25A17	1205	chr22:41215199:-	ST13	25148	chr22:41236696:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	LOCAL_REARRANGEMENT:-:[5136],SLC25A17->chr22:41165634-41215403:-,solute_carrier_family_25_member_17,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	SND1--TES	2	0	SND1	1272	chr7:127292505:+	TES	43092	chr7:115874588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	SRSF2--RALGPS2	2	0	SRSF2	3314	chr17:74731143:-	RALGPS2	16206	chr1:178846633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	SRSF2->Oncogene{Bushman},chr17:74730197-74733456:-,serine/arginine-rich_splicing_factor_2,RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	SRSF4--YTHDF2	2	0	SRSF4	1342	chr1:29508158:-	YTHDF2	21618	chr1:29095441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4,YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+	SNU886_LIVER	1	1	0.0151	TRUE	0	1	0	1	0	TRUE	ACH-000316
SNU886_LIVER	STAM--RSU1	2	0	STAM	2340	chr10:17702547:+	RSU1	20851	chr10:16824083:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	STAM->chr10:17686124-17757913:+,signal_transducing_adaptor_molecule,RSU1->Ras_suppressor_protein_1,chr10:16632610-16859527:-	SNU886_LIVER	1	1	0.0151	TRUE	0	1	0	1	0	TRUE	ACH-000316
SNU886_LIVER	TXN2--RBM39	2	0	TXN2	2456	chr22:36876622:-	RBM39	30997	chr20:34293252:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	TXN2->chr22:36863083-36878077:-,thioredoxin_2,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	UBC--DNAJC5	2	0	UBC	2915	chr12:125399133:-	DNAJC5	10058	chr20:62559688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	UBC->chr12:125396150-125401914:-,ubiquitin_C,DNAJC5->DnaJ_heat_shock_protein_family_(Hsp40)_member_C5,chr20:62526518-62567384:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	UGDH--SMIM14	2	0	UGDH	2029	chr4:39528903:-	SMIM14	19868	chr4:39606800:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	LOCAL_REARRANGEMENT:-:[18019],UGDH->UDP-glucose_6-dehydrogenase,chr4:39500375-39529931:-,SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14	SNU886_LIVER	1	1	0.0151	TRUE	0	1	0	4	0	TRUE	ACH-000316
SNU886_LIVER	YWHAE--ALB	2	0	YWHAE	1332	chr17:1303341:-	ALB	15397	chr4:74270086:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,ALB->albumin,chr4:74262831-74287129:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
ML1_THYROID	COPB2--RP11-385J1.2	62	15	COPB2	7746	chr3:139098222:-	RP11-385J1.2	38769	chr3:178244413:-	ONLY_REF_SPLICE	YES	224	1	0.26	0.99	0.5639	0.1364	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.26	0.99	0.7003	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	COPB2--RP11-385J1.2	19	16	COPB2	8079	chr3:139097889:-	RP11-385J1.2	38769	chr3:178244413:-	ONLY_REF_SPLICE	YES	183	1	0.16	0.97	0.1728	0.1455	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.16	0.97	0.3183	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	COPB2--RP11-385J1.2	3	16	COPB2	8079	chr3:139097889:-	RP11-385J1.2	36447	chr3:178255184:-	ONLY_REF_SPLICE	YES	183	0	0.09	1	0.0273	0.1455	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.09	1	0.1728	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	COPB2--RP11-385J1.2	3	16	COPB2	8079	chr3:139097889:-	RP11-385J1.2	37583	chr3:178253687:-	ONLY_REF_SPLICE	YES	183	2	0.09	0.9	0.0273	0.1455	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.09	0.9	0.1728	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	COPB2--RP11-385J1.2	3	15	COPB2	7746	chr3:139098222:-	RP11-385J1.2	37583	chr3:178253687:-	ONLY_REF_SPLICE	YES	224	2	0.07	0.9	0.0273	0.1364	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.07	0.9	0.1637	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	COPB2--RP11-385J1.2	1	15	COPB2	7746	chr3:139098222:-	RP11-385J1.2	36447	chr3:178255184:-	ONLY_REF_SPLICE	NO	224	0	0.07	1	0.0091	0.1364	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.07	1	0.1455	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	ARL8B--ITPR1	2	0	ARL8B	1369	chr3:5164273:+	ITPR1	82367	chr3:4878458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	ARL8B->ADP_ribosylation_factor_like_GTPase_8B,chr3:5163905-5222596:+,ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1	ML1_THYROID	1	1	0.0182	TRUE	0	1	0	2	1	TRUE	ACH-000058
ML1_THYROID	COPB2--RP11-385J1.2	1	2	COPB2	1185	chr3:139108390:-	RP11-385J1.2	38769	chr3:178244413:-	ONLY_REF_SPLICE	YES	18	1	0.14	0.75	0.0091	0.0182	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.14	0.75	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	B4GALT1--BAG1	1	1	B4GALT1	1599	chr9:33166756:-	BAG1	16811	chr9:33262828:-	ONLY_REF_SPLICE	YES	66	51	0.03	0.04	0.0091	0.0091	GTEx_v2:{count=2;pct=0.02%;dist=Liver=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Cervix=3},LOCAL_REARRANGEMENT:-:[80464],B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,BAG1->BCL2_associated_athanogene_1,Oncogene{Bushman},chr9:33247818-33264761:-	ML1_THYROID	0.03	0.04	0.0182	TRUE	0	5	1	5	3	TRUE	ACH-000058
ML1_THYROID	BRWD1--KIAA1958	1	1	BRWD1	4942	chr21:40670358:-	KIAA1958	58038	chr9:115336337:+	ONLY_REF_SPLICE	YES	19	2	0.1	0.5	0.0091	0.0091	BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,KIAA1958->KIAA1958,chr9:115249127-115431677:+	ML1_THYROID	0.1	0.5	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000058
RMGI_OVARY	LDLR--BRK1	1686	633	LDLR	5037	chr19:11213462:+	BRK1	28270	chr3:10167310:+	ONLY_REF_SPLICE	YES	1029	784	0.69	0.75	22.7253	8.5321	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	RMGI_OVARY	0.69	0.75	31.2574	TRUE	0	0	0	2	0	TRUE	ACH-000719
RMGI_OVARY	LDLR--BRK1	1456	1191	LDLR	7851	chr19:11216276:+	BRK1	28270	chr3:10167310:+	ONLY_REF_SPLICE	YES	1	784	1	0.77	19.6252	16.0533	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	RMGI_OVARY	0.77	1	35.6785	TRUE	0	0	0	2	0	TRUE	ACH-000719
RMGI_OVARY	RXFP1--LINC00243	535	155	RXFP1	19586	chr4:159554628:+	LINC00243	35747	chr6:30766549:-	ONLY_REF_SPLICE	YES	905	9	0.43	0.99	7.2112	2.0892	RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	RMGI_OVARY	0.43	0.99	9.3004	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	TRPC4AP--AVPI1	227	167	TRPC4AP	7955	chr20:33632308:-	AVPI1	25357	chr10:99439672:-	ONLY_REF_SPLICE	YES	83	91	0.83	0.81	3.0597	2.251	TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,AVPI1->Oncogene{Bushman},arginine_vasopressin_induced_1,chr10:99437181-99447080:-	RMGI_OVARY	0.81	0.83	5.3107	TRUE	0	0	0	2	0	TRUE	ACH-000719
RMGI_OVARY	CLTC--RPS6KB1	208	106	CLTC	1316	chr17:57697534:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	220	15	0.59	0.95	2.8036	1.4288	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	RMGI_OVARY	0.59	0.95	4.2324	TRUE	0	1	0	5	0	TRUE	ACH-000719
RMGI_OVARY	LDLR--BRK1	22	642	LDLR	7851	chr19:11216276:+	BRK1	28913	chr3:10167953:+	ONLY_REF_SPLICE	YES	1	817	1	0.45	0.2965	8.6534	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	RMGI_OVARY	0.45	1	8.9499	TRUE	0	0	0	2	0	TRUE	ACH-000719
RMGI_OVARY	RNH1--DEAF1	122	68	RNH1	10330	chr11:497971:-	DEAF1	36259	chr11:644654:-	ONLY_REF_SPLICE	YES	403	45	0.32	0.81	1.6444	0.9166	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RNH1->chr11:494512-507300:-,ribonuclease/angiogenin_inhibitor_1,DEAF1->DEAF1,_transcription_factor,chr11:644233-706715:-	RMGI_OVARY	0.32	0.81	2.561	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RXFP1--LINC00243	87	194	RXFP1	19586	chr4:159554628:+	LINC00243	32840	chr6:30782549:-	ONLY_REF_SPLICE	YES	905	0	0.24	1	1.1727	2.6149	RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	RMGI_OVARY	0.24	1	3.7876	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	LDLR--BRK1	3	490	LDLR	4987	chr19:11213412:+	BRK1	28270	chr3:10167310:+	INCL_NON_REF_SPLICE	YES	960	784	0.34	0.39	0.0404	6.6046	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	RMGI_OVARY	0.34	0.39	6.645	TRUE	0	0	0	2	0	TRUE	ACH-000719
RMGI_OVARY	LDLR--BRK1	1	324	LDLR	5037	chr19:11213462:+	BRK1	28913	chr3:10167953:+	ONLY_REF_SPLICE	NO	1029	817	0.24	0.28	0.0135	4.3671	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	RMGI_OVARY	0.24	0.28	4.3806	TRUE	0	0	0	2	0	TRUE	ACH-000719
RMGI_OVARY	LDLR--BRK1	7	284	LDLR	3681	chr19:11211021:+	BRK1	28270	chr3:10167310:+	ONLY_REF_SPLICE	YES	1521	784	0.16	0.27	0.0944	3.828	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	RMGI_OVARY	0.16	0.27	3.9224	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	TBC1D8--C12orf75	57	33	TBC1D8	6117	chr2:101767589:-	C12orf75	34129	chr12:105742380:+	ONLY_REF_SPLICE	YES	56	610	0.62	0.13	0.7683	0.4448	{Klijn_CCL:Ovary=1},TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,C12orf75->chr12:105629068-105789875:+,chromosome_12_open_reading_frame_75	RMGI_OVARY	0.13	0.62	1.2131	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MSI2--MRPS23	49	21	MSI2	17645	chr17:55478832:+	MRPS23	51602	chr17:55918621:-	ONLY_REF_SPLICE	YES	117	1373	0.37	0.05	0.6605	0.2831	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,MRPS23->chr17:55916842-55927417:-,mitochondrial_ribosomal_protein_S23	RMGI_OVARY	0.05	0.37	0.9436	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RXFP1--LINC00243	7	165	RXFP1	19586	chr4:159554628:+	LINC00243	32993	chr6:30782396:-	INCL_NON_REF_SPLICE	YES	905	19	0.16	0.9	0.0944	2.224	RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	RMGI_OVARY	0.16	0.9	2.3184	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	NUMB--COL4A1	40	1	NUMB	5521	chr14:73925199:-	COL4A1	32167	chr13:110895081:-	ONLY_REF_SPLICE	YES	0	99	1	0.29	0.5392	0.0135	NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RMGI_OVARY	0.29	1	0.5527	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RXFP1--LINC00243	9	117	RXFP1	18514	chr4:159549861:+	LINC00243	32840	chr6:30782549:-	ONLY_REF_SPLICE	YES	1251	0	0.09	1	0.1213	1.577	RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	RMGI_OVARY	0.09	1	1.6983	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	IDH2--RP11-443B7.2	29	29	IDH2	1229	chr15:90645508:-	RP11-443B7.2	14625	chr1:235095444:+	ONLY_REF_SPLICE	YES	188	0	0.24	1	0.3909	0.3909	IDH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr15:90626277-90645736:-,isocitrate_dehydrogenase_(NADP(+))_2,_mitochondrial,RP11-443B7.2->chr1:235092978-235095736:+	RMGI_OVARY	0.24	1	0.7818	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RNH1--DEAF1	16	73	RNH1	10330	chr11:497971:-	DEAF1	35030	chr11:646555:-	INCL_NON_REF_SPLICE	YES	403	41	0.18	0.68	0.2157	0.984	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RNH1->chr11:494512-507300:-,ribonuclease/angiogenin_inhibitor_1,DEAF1->DEAF1,_transcription_factor,chr11:644233-706715:-	RMGI_OVARY	0.18	0.68	1.1997	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	PPP1R18--RXFP1	29	2	PPP1R18	4488	chr6:30652185:-	RXFP1	11760	chr4:159343422:+	ONLY_REF_SPLICE	YES	8	0	0.79	1	0.3909	0.027	PPP1R18->chr6:30644166-30655672:-,protein_phosphatase_1_regulatory_subunit_18,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	RMGI_OVARY	0.79	1	0.4179	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RXFP1--LINC00243	3	93	RXFP1	18514	chr4:159549861:+	LINC00243	35747	chr6:30766549:-	ONLY_REF_SPLICE	YES	1251	9	0.07	0.91	0.0404	1.2535	RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	RMGI_OVARY	0.07	0.91	1.2939	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	DCTN4--CTB-23I7.1	23	6	DCTN4	17098	chr5:150095127:-	CTB-23I7.1	32972	chr5:150746219:-	ONLY_REF_SPLICE	YES	50	0	0.37	1	0.31	0.0809	DCTN4->chr5:150088002-150138671:-,dynactin_subunit_4,CTB-23I7.1->chr5:150745994-150810913:-	RMGI_OVARY	0.37	1	0.3909	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	VCL--SEC24C	23	0	VCL	1053	chr10:75757924:+	SEC24C	34316	chr10:75519377:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.31	0	VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,SEC24C->SEC24_homolog_C,_COPII_coat_complex_component,chr10:75504120-75531919:+	RMGI_OVARY	1	1	0.31	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	GDA--C10orf68	17	17	GDA	2545	chr9:74764598:+	C10orf68	39106	chr10:32912647:+	ONLY_REF_SPLICE	YES	237	3	0.13	0.92	0.2291	0.2291	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.13	0.92	0.4582	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	CLTC--RPS6KB1	1	75	CLTC	1316	chr17:57697534:+	RPS6KB1	42234	chr17:57990045:+	ONLY_REF_SPLICE	NO	220	20	0.26	0.79	0.0135	1.0109	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	RMGI_OVARY	0.26	0.79	1.0244	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RELB--PVRL2	13	13	RELB	2304	chr19:45506254:+	PVRL2	18656	chr19:45368528:+	ONLY_REF_SPLICE	YES	7	254	0.79	0.09	0.1752	0.1752	{Klijn_CCL:Ovary=1},RELB->Oncogene{Bushman},RELB_proto-oncogene,_NF-kB_subunit,chr19:45504688-45541452:+,PVRL2->chr19:45349432-45392485:+	RMGI_OVARY	0.09	0.79	0.3504	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	GDA--C10orf68	12	13	GDA	2545	chr9:74764598:+	C10orf68	41354	chr10:32974898:+	ONLY_REF_SPLICE	YES	237	3	0.1	0.89	0.1617	0.1752	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.1	0.89	0.3369	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	GDA--C10orf68	9	21	GDA	2545	chr9:74764598:+	C10orf68	38033	chr10:32873160:+	ONLY_REF_SPLICE	YES	237	0	0.11	1	0.1213	0.2831	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.11	1	0.4044	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	EXT1--TSG101	13	3	EXT1	2769	chr8:119122324:-	TSG101	33699	chr11:18505619:-	ONLY_REF_SPLICE	YES	18	317	0.47	0.05	0.1752	0.0404	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101	RMGI_OVARY	0.05	0.47	0.2156	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	NCK2--TMEM131	12	5	NCK2	3175	chr2:106433070:+	TMEM131	17268	chr2:98504583:-	ONLY_REF_SPLICE	YES	20	3	0.46	0.85	0.1617	0.0674	NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+,TMEM131->chr2:98372799-98612388:-,transmembrane_protein_131	RMGI_OVARY	0.46	0.85	0.2291	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	IDH2--RP11-443B7.2	5	32	IDH2	1229	chr15:90645508:-	RP11-443B7.2	13495	chr1:235092978:+	ONLY_REF_SPLICE	YES	188	0	0.16	1	0.0674	0.4313	IDH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr15:90626277-90645736:-,isocitrate_dehydrogenase_(NADP(+))_2,_mitochondrial,RP11-443B7.2->chr1:235092978-235095736:+	RMGI_OVARY	0.16	1	0.4987	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	ZNF652--RP11-47L3.1	9	6	ZNF652	4847	chr17:47394188:-	RP11-47L3.1	21568	chr17:33650167:+	ONLY_REF_SPLICE	YES	4	0	0.79	1	0.1213	0.0809	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,RP11-47L3.1->chr17:33640521-33651919:+	RMGI_OVARY	0.79	1	0.2022	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	C10orf68--C9orf85	9	2	C10orf68	11981	chr10:32975008:+	C9orf85	42745	chr9:74597573:+	ONLY_REF_SPLICE	YES	9	9	0.55	0.55	0.1213	0.027	C10orf68->chr10:32832297-33171802:+,C9orf85->chr9:74526426-74600970:+,chromosome_9_open_reading_frame_85	RMGI_OVARY	0.55	0.55	0.1483	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	PPP1R18--RXFP1	9	0	PPP1R18	4488	chr6:30652185:-	RXFP1	12859	chr4:159435997:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1213	0	PPP1R18->chr6:30644166-30655672:-,protein_phosphatase_1_regulatory_subunit_18,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	RMGI_OVARY	1	1	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	GDA--C10orf68	3	22	GDA	2545	chr9:74764598:+	C10orf68	36969	chr10:32872096:+	INCL_NON_REF_SPLICE	YES	237	1	0.1	0.96	0.0404	0.2965	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.1	0.96	0.3369	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	TBC1D8--C12orf75	1	30	TBC1D8	6117	chr2:101767589:-	C12orf75	36232	chr12:105759585:+	ONLY_REF_SPLICE	YES	56	728	0.36	0.04	0.0135	0.4044	{Klijn_CCL:Ovary=1},TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,C12orf75->chr12:105629068-105789875:+,chromosome_12_open_reading_frame_75	RMGI_OVARY	0.04	0.36	0.4179	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	GDA--C10orf68	7	3	GDA	2545	chr9:74764598:+	C10orf68	44690	chr10:33000548:+	ONLY_REF_SPLICE	YES	237	9	0.04	0.53	0.0944	0.0404	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.04	0.53	0.1348	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	ZNF652--RP11-47L3.1	7	1	ZNF652	4307	chr17:47394728:-	RP11-47L3.1	21568	chr17:33650167:+	ONLY_REF_SPLICE	YES	9	0	0.47	1	0.0944	0.0135	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,RP11-47L3.1->chr17:33640521-33651919:+	RMGI_OVARY	0.47	1	0.1079	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	GDA--C10orf68	1	22	GDA	2545	chr9:74764598:+	C10orf68	36870	chr10:32871997:+	ONLY_REF_SPLICE	NO	237	0	0.09	1	0.0135	0.2965	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.09	1	0.31	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	TMEM131--NCK2	5	4	TMEM131	1450	chr2:98611939:-	NCK2	49406	chr2:106471504:+	ONLY_REF_SPLICE	YES	1	21	0.9	0.3	0.0674	0.0539	TMEM131->chr2:98372799-98612388:-,transmembrane_protein_131,NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+	RMGI_OVARY	0.3	0.9	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	ZNF562--PIP5K1C	4	8	ZNF562	5947	chr19:9767223:-	PIP5K1C	25494	chr19:3648706:-	ONLY_REF_SPLICE	YES	9	10	0.57	0.55	0.0539	0.1078	ZNF562->chr19:9759330-9785776:-,zinc_finger_protein_562,PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma	RMGI_OVARY	0.55	0.57	0.1617	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	TMEM63A--LEFTY2	4	5	TMEM63A	16435	chr1:226046896:-	LEFTY2	29730	chr1:226128706:-	INCL_NON_REF_SPLICE	YES	28	2	0.24	0.82	0.0539	0.0674	LOCAL_REARRANGEMENT:-:[54229],TMEM63A->chr1:226033237-226070069:-,transmembrane_protein_63A,LEFTY2->chr1:226124298-226129189:-,left-right_determination_factor_2	RMGI_OVARY	0.24	0.82	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	TRPC4AP--AVPI1	1	17	TRPC4AP	7955	chr20:33632308:-	AVPI1	26654	chr10:99437782:-	ONLY_REF_SPLICE	NO	83	215	0.18	0.08	0.0135	0.2291	TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,AVPI1->Oncogene{Bushman},arginine_vasopressin_induced_1,chr10:99437181-99447080:-	RMGI_OVARY	0.08	0.18	0.2426	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	CTD-2374C24.1--RP11-6N13.1	5	0	CTD-2374C24.1	1068	chr5:104581998:-	RP11-6N13.1	12485	chr5:104222676:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0674	0	CTD-2374C24.1->chr5:104253193-104582065:-,RP11-6N13.1->chr5:103718999-104728671:-	RMGI_OVARY	1	1	0.0674	TRUE	0	2	0	1	2	TRUE	ACH-000719
RMGI_OVARY	PRKCE--AC073218.3	5	0	PRKCE	2104	chr2:45879587:+	AC073218.3	43266	chr2:34960174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0674	0	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,AC073218.3->chr2:34960042-34962185:-	RMGI_OVARY	1	1	0.0674	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RP11-486O12.2--FTH1	5	0	RP11-486O12.2	1335	chr12:124069328:-	FTH1	7036	chr11:61734993:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	RP11-486O12.2->chr12:124066767-124069662:-,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	RMGI_OVARY	1	1	0.0674	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	TBC1D13--PPAPDC3	4	4	TBC1D13	5905	chr9:131554853:+	PPAPDC3	19760	chr9:134183310:+	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.0539	0.0539	TBC1D13->TBC1_domain_family_member_13,chr9:131549483-131572711:+,PPAPDC3->chr9:134165081-134184649:+	RMGI_OVARY	0.53	1	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	ZNF652--RP11-47L3.1	3	8	ZNF652	4847	chr17:47394188:-	RP11-47L3.1	20437	chr17:33648754:+	ONLY_REF_SPLICE	YES	4	0	0.73	1	0.0404	0.1078	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,RP11-47L3.1->chr17:33640521-33651919:+	RMGI_OVARY	0.73	1	0.1482	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RP11-486O12.2--IGFBP1	3	7	RP11-486O12.2	1561	chr12:124069102:-	IGFBP1	7028	chr7:45928087:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.71	0.0404	0.0944	RP11-486O12.2->chr12:124066767-124069662:-,IGFBP1->Oncogene{Bushman},chr7:45927956-45933267:+,insulin_like_growth_factor_binding_protein_1	RMGI_OVARY	0.71	1	0.1348	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RP11-304L19.5--ABCA3	4	2	RP11-304L19.5	1499	chr16:2204861:-	ABCA3	21884	chr16:2342239:-	INCL_NON_REF_SPLICE	YES	0	6	1	0.5	0.0539	0.027	RP11-304L19.5->chr16:2204798-2205359:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	RMGI_OVARY	0.5	1	0.0809	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	ZNF652--RP11-47L3.1	4	2	ZNF652	4307	chr17:47394728:-	RP11-47L3.1	20437	chr17:33648754:+	ONLY_REF_SPLICE	YES	9	0	0.4	1	0.0539	0.027	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,RP11-47L3.1->chr17:33640521-33651919:+	RMGI_OVARY	0.4	1	0.0809	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	GDA--C10orf68	1	13	GDA	2545	chr9:74764598:+	C10orf68	40205	chr10:32964593:+	ONLY_REF_SPLICE	NO	237	3	0.06	0.82	0.0135	0.1752	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.06	0.82	0.1887	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RP11-608O21.1--KANSL1	3	4	RP11-608O21.1	1217	chr4:19457275:+	KANSL1	16489	chr17:44172067:-	ONLY_REF_SPLICE	YES	0	30	1	0.19	0.0404	0.0539	RP11-608O21.1->chr4:19457059-19911315:+,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	RMGI_OVARY	0.19	1	0.0943	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	ZNF562--PIP5K1C	1	8	ZNF562	5947	chr19:9767223:-	PIP5K1C	26578	chr19:3647384:-	ONLY_REF_SPLICE	NO	9	18	0.5	0.33	0.0135	0.1078	ZNF562->chr19:9759330-9785776:-,zinc_finger_protein_562,PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma	RMGI_OVARY	0.33	0.5	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RP11-703M24.5--MYOM1	2	2	RP11-703M24.5	1450	chr18:2832614:-	MYOM1	18842	chr18:3164437:-	ONLY_REF_SPLICE	YES	1	6	0.8	0.4	0.027	0.027	RP11-703M24.5->chr18:2688562-2833063:-,MYOM1->chr18:3066805-3220106:-,myomesin_1	RMGI_OVARY	0.4	0.8	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	DCTN4--CTB-23I7.1	1	5	DCTN4	16000	chr5:150097838:-	CTB-23I7.1	32972	chr5:150746219:-	ONLY_REF_SPLICE	YES	57	0	0.1	1	0.0135	0.0674	DCTN4->chr5:150088002-150138671:-,dynactin_subunit_4,CTB-23I7.1->chr5:150745994-150810913:-	RMGI_OVARY	0.1	1	0.0809	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	CTD-2374C24.1--RP11-6N13.1	2	0	CTD-2374C24.1	4423	chr5:104311375:-	RP11-6N13.1	12485	chr5:104222676:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	CTD-2374C24.1->chr5:104253193-104582065:-,RP11-6N13.1->chr5:103718999-104728671:-	RMGI_OVARY	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	PRKCE--AC073218.3	2	0	PRKCE	5402	chr2:45905055:+	AC073218.3	43266	chr2:34960174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,AC073218.3->chr2:34960042-34962185:-	RMGI_OVARY	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	PRKCE--AC073218.3	2	0	PRKCE	10365	chr2:45928630:+	AC073218.3	43266	chr2:34960174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,AC073218.3->chr2:34960042-34962185:-	RMGI_OVARY	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RP11-440L14.1--CTBP1	2	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	RMGI_OVARY	1	1	0.027	TRUE	0	2	0	7	2	TRUE	ACH-000719
RMGI_OVARY	TMEM63A--LEFTY2	2	0	TMEM63A	13413	chr1:226049918:-	LEFTY2	30734	chr1:226127702:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	LOCAL_REARRANGEMENT:-:[54229],TMEM63A->chr1:226033237-226070069:-,transmembrane_protein_63A,LEFTY2->chr1:226124298-226129189:-,left-right_determination_factor_2	RMGI_OVARY	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	ZNF562--PIP5K1C	2	0	ZNF562	1086	chr19:9785691:-	PIP5K1C	25494	chr19:3648706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	ZNF562->chr19:9759330-9785776:-,zinc_finger_protein_562,PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma	RMGI_OVARY	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	ZNF562--PIP5K1C	1	4	ZNF562	4840	chr19:9768685:-	PIP5K1C	25494	chr19:3648706:-	ONLY_REF_SPLICE	YES	9	10	0.36	0.33	0.0135	0.0539	ZNF562->chr19:9759330-9785776:-,zinc_finger_protein_562,PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma	RMGI_OVARY	0.33	0.36	0.0674	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RP11-304L19.5--ABCA3	1	2	RP11-304L19.5	1216	chr16:2205144:-	ABCA3	21884	chr16:2342239:-	ONLY_REF_SPLICE	YES	40	6	0.07	0.33	0.0135	0.027	RP11-304L19.5->chr16:2204798-2205359:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	RMGI_OVARY	0.07	0.33	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000719
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	313	0	RPL14	4483	chr3:40503515:+	AC005540.3	8966	chr2:191745649:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	4.821	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	4.821	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	84	68	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	39	7	0.8	0.96	1.2938	1.0474	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.96	2.3412	TRUE	0	2	1	16	2	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	61	0	RPL14	4486	chr3:40503518:+	AC005540.3	8972	chr2:191745643:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9395	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9395	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	33	0	RPL14	4486	chr3:40503518:+	AC005540.3	8975	chr2:191745640:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5083	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5083	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	29	11	ABL1	1510	chr9:133589842:+	BCR	40306	chr22:23632526:+	ONLY_REF_SPLICE	YES	2	38	0.95	0.51	0.4467	0.1694	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.95	0.6161	TRUE	0	0	0	6	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	2	66	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	39	7	0.64	0.91	0.0308	1.0166	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.91	1.0474	TRUE	0	2	1	16	2	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	11	0	RPL14	4487	chr3:40503519:+	AC005540.3	8967	chr2:191745648:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1694	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1694	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	10	0	RPL14	4485	chr3:40503517:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.154	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.154	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	9	0	RPL14	4476	chr3:40503508:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1386	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1386	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	8	0	RPL14	4495	chr3:40503527:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1232	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1232	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	8	0	RPL14	4492	chr3:40503524:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1232	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1232	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	7	0	RPL14	4498	chr3:40503530:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1078	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAMTOR5-AS1--HBA2	6	0	LAMTOR5-AS1	2330	chr1:110950294:+	HBA2	18588	chr16:223141:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0	LAMTOR5-AS1->LAMTOR5_antisense_RNA_1,chr1:110925441-110974982:+,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0924	TRUE	1	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	5	0	RPL14	4486	chr3:40503518:+	AC005540.3	8978	chr2:191745637:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.077	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.077	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	0	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0616	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0616	TRUE	0	2	0	11	2	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	4	0	RPL14	4501	chr3:40503533:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0616	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--TCF3	3	0	BSG	2405	chr19:572701:+	TCF3	17968	chr19:1632404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0462	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0462	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	3	0	RPL14	4507	chr3:40503539:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0462	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABCC4--SOS1	2	0	ABCC4	14477	chr13:95838955:-	SOS1	52253	chr2:39261999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	ABCC4->ATP_binding_cassette_subfamily_C_member_4,chr13:95672083-95953687:-,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKZF1--PSME4	2	0	ANKZF1	1649	chr2:220095127:+	PSME4	54823	chr2:54096675:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	ANKZF1->ankyrin_repeat_and_zinc_finger_domain_containing_1,chr2:220094479-220101391:+,PSME4->chr2:54091204-54197977:-,proteasome_activator_subunit_4	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--SBNO2	2	0	BSG	2405	chr19:572701:+	SBNO2	21547	chr19:1127764:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf63--TAL1	2	0	C1orf63	8720	chr1:25594231:-	TAL1	22422	chr1:47695023:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,TAL1->Oncogene{Bushman},T-cell_acute_lymphocytic_leukemia_1,chr1:47681962-47697892:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-260E6.6--DNAJB4	2	0	CTC-260E6.6	12150	chr19:20261170:-	DNAJB4	23394	chr1:78478735:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	CTC-260E6.6->chr19:20236186-20432114:-,DNAJB4->DnaJ_heat_shock_protein_family_(Hsp40)_member_B4,chr1:78444859-78483648:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-435M10.3--PHF13	2	0	CTC-435M10.3	1350	chr19:41857107:+	PHF13	15323	chr1:6676817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	CTC-435M10.3->chr19:41856758-41930906:+,PHF13->PHD_finger_protein_13,chr1:6673745-6684093:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMEB1--HP1BP3	2	0	GMEB1	6785	chr1:29023596:+	HP1BP3	26468	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	GMEB1->chr1:28995244-29045865:+,glucocorticoid_modulatory_element_binding_protein_1,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM5--LRBA	2	0	RBM5	5377	chr3:50131308:+	LRBA	67903	chr4:151604869:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-977B1.7--CARS2	2	0	RP5-977B1.7	2583	chr20:35199844:-	CARS2	19274	chr13:111357918:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	RP5-977B1.7->chr20:35136563-35201794:-,CARS2->chr13:111293759-111365950:-,cysteinyl-tRNA_synthetase_2,_mitochondrial_(putative)	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	2	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0154	0.0308	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0462	TRUE	0	3	0	7	3	TRUE	ACH-000241
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6--RASA3	699	291	GAS6	13349	chr13:114529969:-	RASA3	44356	chr13:114751269:-	ONLY_REF_SPLICE	YES	811	34	0.55	0.97	9.4955	3.9531	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.97	13.4486	TRUE	0	2	1	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT5--IGL@	83	19	MGAT5	1309	chr2:134877862:+	IGL@	100008	chr22:23264894:+	INCL_NON_REF_SPLICE	YES	4	31	0.96	0.77	1.1275	0.2581	MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.96	1.3856	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--IGL@	55	43	PVT1	1202	chr8:128806980:+	IGL@	98881	chr22:23264894:+	INCL_NON_REF_SPLICE	YES	138	31	0.42	0.76	0.7471	0.5841	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.76	1.3312	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FCHSD2--CARNS1	36	30	FCHSD2	10623	chr11:72695133:-	CARNS1	28907	chr11:67182839:+	ONLY_REF_SPLICE	YES	42	1	0.61	0.99	0.489	0.4075	{Klijn_CCL:Lymphoid=1},FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.99	0.8965	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSPAN4--TALDO1	30	7	TSPAN4	3911	chr11:847300:+	TALDO1	17885	chr11:755879:+	ONLY_REF_SPLICE	YES	109	935	0.25	0.04	0.4075	0.0951	LOCAL_REARRANGEMENT:+:[77784],TSPAN4->chr11:842808-867116:+,tetraspanin_4,TALDO1->chr11:747329-765024:+,transaldolase_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.25	0.5026	TRUE	0	1	0	1	1	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAH10--TCTN2	24	9	DNAH10	15813	chr12:124283918:+	TCTN2	100668	chr12:124189079:+	ONLY_REF_SPLICE	YES	0	3	1	0.92	0.326	0.1223	LOCAL_REARRANGEMENT:+:[54094],DNAH10->chr12:124247042-124420753:+,dynein_axonemal_heavy_chain_10,TCTN2->chr12:124155660-124192948:+,tectonic_family_member_2	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.4483	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FCHSD2--CARNS1	17	15	FCHSD2	10623	chr11:72695133:-	CARNS1	33026	chr11:67186958:+	ONLY_REF_SPLICE	YES	42	29	0.43	0.52	0.2309	0.2038	{Klijn_CCL:Lymphoid=1},FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.52	0.4347	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6--RASA3	1	56	GAS6	13349	chr13:114529969:-	RASA3	45540	chr13:114748833:-	ONLY_REF_SPLICE	NO	811	204	0.07	0.22	0.0136	0.7607	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.22	0.7743	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544M6.1--LINC00923	13	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	10269	chr15:98301891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1766	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1766	TRUE	0	3	0	6	3	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT5--IGL@	4	18	MGAT5	1309	chr2:134877862:+	IGL@	100012	chr22:23264898:+	INCL_NON_REF_SPLICE	YES	4	31	0.85	0.42	0.0543	0.2445	MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.85	0.2988	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FCHSD2--CARNS1	3	18	FCHSD2	10623	chr11:72695133:-	CARNS1	31970	chr11:67185902:+	ONLY_REF_SPLICE	YES	42	21	0.33	0.5	0.0408	0.2445	{Klijn_CCL:Lymphoid=1},FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.5	0.2853	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK1--AC107218.3	6	1	DOCK1	50349	chr10:129218013:+	AC107218.3	63490	chr2:215338493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0815	0.0136	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,AC107218.3->chr2:215114764-215548970:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IQCH--SPESP1	5	4	IQCH	2645	chr15:67553732:+	SPESP1	37942	chr15:69237938:+	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0679	0.0543	IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+,SPESP1->chr15:69110560-69239150:+,sperm_equatorial_segment_protein_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.1222	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK5RAP2--VWC2L	5	2	CDK5RAP2	17729	chr9:123249572:-	VWC2L	54150	chr2:215301353:+	ONLY_REF_SPLICE	YES	26	0	0.21	1	0.0679	0.0272	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,VWC2L->chr2:215275789-215443683:+,von_Willebrand_factor_C_domain_containing_protein_2-like	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK5RAP2--VWC2L	4	2	CDK5RAP2	16585	chr9:123253585:-	VWC2L	54150	chr2:215301353:+	ONLY_REF_SPLICE	YES	48	0	0.11	1	0.0543	0.0272	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,VWC2L->chr2:215275789-215443683:+,von_Willebrand_factor_C_domain_containing_protein_2-like	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IQCH--SPESP1	3	5	IQCH	4858	chr15:67571850:+	SPESP1	37942	chr15:69237938:+	ONLY_REF_SPLICE	YES	6	0	0.57	1	0.0408	0.0679	IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+,SPESP1->chr15:69110560-69239150:+,sperm_equatorial_segment_protein_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEIS2--RIMS1	4	1	MEIS2	12226	chr15:37329015:-	RIMS1	30862	chr6:72806652:+	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0543	0.0136	MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,RIMS1->chr6:72596406-73112845:+,regulating_synaptic_membrane_exocytosis_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IQCH--SPESP1	4	0	IQCH	2645	chr15:67553732:+	SPESP1	38284	chr15:69238280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+,SPESP1->chr15:69110560-69239150:+,sperm_equatorial_segment_protein_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRNP35--APPL2	4	0	SNRNP35	1576	chr12:123942763:+	APPL2	16109	chr12:105623001:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0543	0	SNRNP35->chr12:123942188-123957701:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_35,APPL2->adaptor_protein,_phosphotyrosine_interacting_with_PH_domain_and_leucine_zipper_2,chr12:105567074-105630016:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSPAN4--TALDO1	4	0	TSPAN4	1108	chr11:842915:+	TALDO1	17885	chr11:755879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0543	0	LOCAL_REARRANGEMENT:+:[77784],TSPAN4->chr11:842808-867116:+,tetraspanin_4,TALDO1->chr11:747329-765024:+,transaldolase_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAH10--TCTN2	3	2	DNAH10	14687	chr12:124281379:+	TCTN2	100668	chr12:124189079:+	ONLY_REF_SPLICE	YES	2	3	0.71	0.62	0.0408	0.0272	LOCAL_REARRANGEMENT:+:[54094],DNAH10->chr12:124247042-124420753:+,dynein_axonemal_heavy_chain_10,TCTN2->chr12:124155660-124192948:+,tectonic_family_member_2	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.71	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC107218.3--VWC2L	3	1	AC107218.3	5450	chr2:215300916:-	VWC2L	12438	chr2:215278838:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0.0136	AC107218.3->chr2:215114764-215548970:-,VWC2L->chr2:215275789-215443683:+,von_Willebrand_factor_C_domain_containing_protein_2-like	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544M6.1--LINC00923	3	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	11441	chr15:98286713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	1	0	2	1	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAH10--TCTN2	1	4	DNAH10	15813	chr12:124283918:+	TCTN2	101825	chr12:124191273:+	ONLY_REF_SPLICE	YES	0	6	1	0.45	0.0136	0.0543	LOCAL_REARRANGEMENT:+:[54094],DNAH10->chr12:124247042-124420753:+,dynein_axonemal_heavy_chain_10,TCTN2->chr12:124155660-124192948:+,tectonic_family_member_2	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	1	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT5--MYC	2	0	MGAT5	1309	chr2:134877862:+	MYC	31769	chr8:128750494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-114H21.2--CTB-1I21.1	1	4	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	22	0	0.19	1	0.0136	0.0543	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0679	TRUE	0	2	0	12	2	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TEX2--DDX5	2	0	TEX2	1134	chr17:62340528:-	DDX5	30452	chr17:62500960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	TEX2->chr17:62224587-62340661:-,testis_expressed_2,DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	1	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NADSYN1--TMEM132A	1	3	NADSYN1	7855	chr11:71175188:+	TMEM132A	42383	chr11:60694051:+	ONLY_REF_SPLICE	YES	90	3	0.04	0.57	0.0136	0.0408	NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+,TMEM132A->chr11:60691935-60704631:+,transmembrane_protein_132A	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.57	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEIS2--RIMS1	1	2	MEIS2	12226	chr15:37329015:-	RIMS1	29781	chr6:72678686:+	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0136	0.0272	MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,RIMS1->chr6:72596406-73112845:+,regulating_synaptic_membrane_exocytosis_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC107218.3--VWC2L	1	1	AC107218.3	5450	chr2:215300916:-	VWC2L	14528	chr2:215301353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0.0136	AC107218.3->chr2:215114764-215548970:-,VWC2L->chr2:215275789-215443683:+,von_Willebrand_factor_C_domain_containing_protein_2-like	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IQCH--SPESP1	1	1	IQCH	1148	chr15:67547285:+	SPESP1	37942	chr15:69237938:+	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0136	0.0136	IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+,SPESP1->chr15:69110560-69239150:+,sperm_equatorial_segment_protein_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000817
OV56_OVARY	PLCB4--PLCB1	4	0	PLCB4	1141	chr20:9049550:+	PLCB1	86832	chr20:8862269:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.038	0	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	OV56_OVARY	1	1	0.038	TRUE	0	0	0	2	0	TRUE	ACH-000091
OV56_OVARY	VEGFA--SRSF5	3	0	VEGFA	9283	chr6:43746273:+	SRSF5	26610	chr14:70237914:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	VEGFA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:43737921-43754224:+,vascular_endothelial_growth_factor_A,SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5	OV56_OVARY	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	CAPZB--ECE1	2	0	CAPZB	1137	chr1:19811930:-	ECE1	23496	chr1:21616649:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,ECE1->chr1:21543740-21671997:-,endothelin_converting_enzyme_1	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	FKBP5--NRN1	2	0	FKBP5	3436	chr6:35656581:-	NRN1	27624	chr6:6002730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	FKBP5->FK506_binding_protein_5,chr6:35541362-35696360:-,NRN1->chr6:5998232-6007200:-,neuritin_1	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	LAPTM4A--SAT1	2	0	LAPTM4A	4039	chr2:20237077:-	SAT1	11224	chrX:23801917:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	LAPTM4A->chr2:20232411-20251789:-,lysosomal_protein_transmembrane_4_alpha,SAT1->chrX:23801290-23804343:+,spermidine/spermine_N1-acetyltransferase_1	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	MAATS1--GSK3B	2	0	MAATS1	8750	chr3:119434590:+	GSK3B	42255	chr3:119545702:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	LOCAL_INVERSION:+:-:[54221],MAATS1->MYCBP_associated_and_testis_expressed_1,chr3:119421869-119485949:+,GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	NUP214--CYB5R2	2	0	NUP214	5925	chr9:134006223:+	CYB5R2	55733	chr11:7689792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,CYB5R2->chr11:7686331-7698453:-,cytochrome_b5_reductase_2	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	RCC1--GLUD1P6	2	0	RCC1	2175	chr1:28834672:+	GLUD1P6	20011	chr10:48171409:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GLUD1P6->chr10:48169665-48175810:-,glutamate_dehydrogenase_1_pseudogene_6	OV56_OVARY	1	1	0.019	TRUE	0	1	0	1	1	TRUE	ACH-000091
OV56_OVARY	RP11-152P17.2--CBFA2T2	2	0	RP11-152P17.2	5703	chr8:106810553:-	CBFA2T2	33917	chr20:32228150:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	RP11-152P17.2->chr8:106792474-107072752:-,CBFA2T2->CBFA2/RUNX1_translocation_partner_2,chr20:32077881-32237842:+	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	WASF2--MPL	2	0	WASF2	1173	chr1:27816497:-	MPL	20905	chr1:43812116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	WASF2->Oncogene{Bushman},WAS_protein_family_member_2,chr1:27730730-27816669:-,MPL->ArcherDX_panel,FoundationOne_panel,MPL_proto-oncogene,_thrombopoietin_receptor,Oncogene{Bushman},chr1:43803478-43818443:+	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
VMRCRCZ_KIDNEY	STIM1--PPFIBP2	10	4	STIM1	10884	chr11:3988912:+	PPFIBP2	37835	chr11:7570671:+	ONLY_REF_SPLICE	YES	18	0	0.44	1	0.1284	0.0514	HGNC_GENEFAM,STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1,PPFIBP2->PPFIA_binding_protein_2,chr11:7534529-7678358:+	VMRCRCZ_KIDNEY	0.44	1	0.1798	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	BLACE--PGBD2	9	1	BLACE	2220	chr7:155155799:-	PGBD2	13509	chr1:249210801:+	ONLY_REF_SPLICE	YES	0	2	1	0.83	0.1156	0.0128	BLACE->B-cell_acute_lymphoblastic_leukemia_expressed,chr7:155149680-155160629:-,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	VMRCRCZ_KIDNEY	0.83	1	0.1284	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	ACTR3C--BLACE	5	1	ACTR3C	9721	chr7:149946037:-	BLACE	18880	chr7:155155892:-	ONLY_REF_SPLICE	YES	38	0	0.14	1	0.0642	0.0128	ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,BLACE->B-cell_acute_lymphoblastic_leukemia_expressed,chr7:155149680-155160629:-	VMRCRCZ_KIDNEY	0.14	1	0.077	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	SIPA1L2--AC114765.2	4	1	SIPA1L2	21555	chr1:232564157:-	AC114765.2	34461	chr2:221077078:+	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.0514	0.0128	SIPA1L2->chr1:232533711-232697304:-,signal_induced_proliferation_associated_1_like_2,AC114765.2->chr2:220992267-221077212:+	VMRCRCZ_KIDNEY	0.38	1	0.0642	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	MTAP--RP11-399D6.2	3	1	MTAP	7556	chr9:21818201:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0385	0.0128	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	VMRCRCZ_KIDNEY	0.8	1	0.0513	TRUE	0	0	0	2	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	MATR3--HSPA9	3	0	MATR3	9772	chr5:138629494:+	HSPA9	41053	chr5:137897478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	MATR3->chr5:138609441-138667360:+,matrin_3,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	VMRCRCZ_KIDNEY	1	1	0.0385	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	PPP6R2--LIME1	3	0	PPP6R2	2378	chr22:50810579:+	LIME1	30215	chr20:62368886:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2,LIME1->Lck_interacting_transmembrane_adaptor_1,chr20:62366815-62370456:+	VMRCRCZ_KIDNEY	1	1	0.0385	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	AACS--GET4	2	0	AACS	15766	chr12:125599103:+	GET4	42852	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	AACS->acetoacetyl-CoA_synthetase,chr12:125549925-125627873:+,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	BSDC1--FAF1	2	0	BSDC1	1652	chr1:32859681:-	FAF1	37947	chr1:50957473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	BSDC1->BSD_domain_containing_1,chr1:32830704-32860332:-,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	2	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	CENPT--E2F1	2	0	CENPT	11328	chr16:67863833:-	E2F1	17945	chr20:32267780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	CENPT->centromere_protein_T,chr16:67862060-67881714:-,E2F1->E2F_transcription_factor_1,Oncogene{Bushman},chr20:32263489-32274210:-	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	EXOC6B--TCF12	2	0	EXOC6B	1244	chr2:73052927:-	TCF12	40576	chr15:57355948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B,TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	MFI2--TIAL1	2	0	MFI2	8872	chr3:196748275:-	TIAL1	36112	chr10:121337248:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	MFI2->chr3:196715492-196756687:-,TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	PBX3--MAPKAP1	2	0	PBX3	2279	chr9:128510902:+	MAPKAP1	33948	chr9:128322088:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	4	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	PSG5--GTPBP4	2	0	PSG5	8214	chr19:43679367:-	GTPBP4	20773	chr10:1043148:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	PSG5->chr19:43670408-43690688:-,pregnancy_specific_beta-1-glycoprotein_5,GTPBP4->GTP_binding_protein_4,chr10:1034338-1065876:+	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	SIPA1L3--UBA2	2	0	SIPA1L3	4162	chr19:38519796:+	UBA2	44933	chr19:34925773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	TCIRG1--AP3D1	2	0	TCIRG1	8650	chr11:67815271:+	AP3D1	33242	chr19:2114301:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	TCIRG1->Oncogene{Bushman},T-cell_immune_regulator_1,_ATPase_H+_transporting_V0_subunit_a3,chr11:67806483-67818362:+,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	TMEM194A--STAT6	2	0	TMEM194A	2264	chr12:57472402:-	STAT6	27725	chr12:57496704:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_REARRANGEMENT:-:[7345],TMEM194A->chr12:57449426-57481846:-,STAT6->Oncogene{Bushman},chr12:57489191-57525922:-,signal_transducer_and_activator_of_transcription_6	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	ZNF740--MARS	2	0	ZNF740	5110	chr12:53580293:+	MARS	17421	chr12:57883679:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	ZNF740->chr12:53574484-53584596:+,zinc_finger_protein_740,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	STIM1--PPFIBP2	1	3	STIM1	2883	chr11:3877639:+	PPFIBP2	37835	chr11:7570671:+	ONLY_REF_SPLICE	NO	8	0	0.33	1	0.0128	0.0385	HGNC_GENEFAM,STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1,PPFIBP2->PPFIA_binding_protein_2,chr11:7534529-7678358:+	VMRCRCZ_KIDNEY	0.33	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000171
KYSE510_OESOPHAGUS	MRRF--IKBKAP	153	185	MRRF	3446	chr9:125033354:+	IKBKAP	24163	chr9:111674774:-	ONLY_REF_SPLICE	YES	264	101	0.56	0.77	1.9804	2.3945	{Klijn_CCL:Head-Neck=1},MRRF->chr9:125026882-125085743:+,mitochondrial_ribosome_recycling_factor,IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein	KYSE510_OESOPHAGUS	0.56	0.77	4.3749	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	DPP8--PTPLAD1	67	70	DPP8	6033	chr15:65799581:-	PTPLAD1	37988	chr15:65844014:+	ONLY_REF_SPLICE	YES	34	616	0.8	0.18	0.8672	0.906	{Klijn_CCL:Head-Neck=1},LOCAL_INVERSION:-:+:[12714],DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,PTPLAD1->chr15:65822756-65870687:+	KYSE510_OESOPHAGUS	0.18	0.8	1.7732	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	GRWD1--GRIN2D	52	50	GRWD1	2071	chr19:48950100:+	GRIN2D	22386	chr19:48945026:+	ONLY_REF_SPLICE	YES	285	3	0.26	0.97	0.6731	0.6472	LOCAL_REARRANGEMENT:+:[842],GRWD1->chr19:48949030-48960279:+,glutamate-rich_WD_repeat_containing_1,GRIN2D->Oncogene{Bushman},chr19:48898132-48948188:+,glutamate_ionotropic_receptor_NMDA_type_subunit_2D	KYSE510_OESOPHAGUS	0.26	0.97	1.3203	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	IKBKAP--MRRF	21	24	IKBKAP	10385	chr9:111678484:-	MRRF	42994	chr9:125042722:+	ONLY_REF_SPLICE	YES	102	255	0.31	0.15	0.2718	0.3106	{Klijn_CCL:Head-Neck=1},IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein,MRRF->chr9:125026882-125085743:+,mitochondrial_ribosome_recycling_factor	KYSE510_OESOPHAGUS	0.15	0.31	0.5824	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	PKD1P5--NOMO2	23	4	PKD1P5	1357	chr16:18495441:-	NOMO2	30506	chr16:18569113:-	ONLY_REF_SPLICE	YES	3	181	0.9	0.13	0.2977	0.0518	LOCAL_REARRANGEMENT:-:[15385],PKD1P5->chr16:18458147-18495797:-,polycystin_1,_transient_receptor_potential_channel_interacting_pseudogene_5,NOMO2->NODAL_modulator_2,chr16:18511182-18573533:-	KYSE510_OESOPHAGUS	0.13	0.9	0.3495	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	GLI3--MRPL48	16	14	GLI3	15958	chr7:42063067:-	MRPL48	34345	chr11:73516072:+	ONLY_REF_SPLICE	YES	16	119	0.65	0.2	0.2071	0.1812	{Klijn_CCL:Head-Neck=1},GLI3->GLI_family_zinc_finger_3,Oncogene{Bushman},chr7:42000548-42277469:-,MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48	KYSE510_OESOPHAGUS	0.2	0.65	0.3883	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	GRWD1--GRIN2D	5	50	GRWD1	2071	chr19:48950100:+	GRIN2D	22390	chr19:48945030:+	INCL_NON_REF_SPLICE	YES	285	3	0.16	0.95	0.0647	0.6472	LOCAL_REARRANGEMENT:+:[842],GRWD1->chr19:48949030-48960279:+,glutamate-rich_WD_repeat_containing_1,GRIN2D->Oncogene{Bushman},chr19:48898132-48948188:+,glutamate_ionotropic_receptor_NMDA_type_subunit_2D	KYSE510_OESOPHAGUS	0.16	0.95	0.7119	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	PRR18--ATP5G3	12	0	PRR18	1186	chr6:166721751:-	ATP5G3	9669	chr2:176046436:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1553	0	PRR18->chr6:166719168-166721936:-,proline_rich_18,ATP5G3->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C3_(subunit_9),chr2:176040986-176049335:-	KYSE510_OESOPHAGUS	1	1	0.1553	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	MRRF--IKBKAP	5	0	MRRF	1336	chr9:125027217:+	IKBKAP	24163	chr9:111674774:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0647	0	{Klijn_CCL:Head-Neck=1},MRRF->chr9:125026882-125085743:+,mitochondrial_ribosome_recycling_factor,IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein	KYSE510_OESOPHAGUS	1	1	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	PRR18--ATP5G3	5	0	PRR18	1186	chr6:166721751:-	ATP5G3	9695	chr2:176046410:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0647	0	PRR18->chr6:166719168-166721936:-,proline_rich_18,ATP5G3->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C3_(subunit_9),chr2:176040986-176049335:-	KYSE510_OESOPHAGUS	1	1	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	SIN3A--METTL13	3	0	SIN3A	10699	chr15:75715041:-	METTL13	42708	chr1:171753590:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	SIN3A->SIN3_transcription_regulator_family_member_A,chr15:75661720-75748183:-,METTL13->chr1:171750788-171783163:+,methyltransferase_like_13	KYSE510_OESOPHAGUS	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	MYL12A--TGIF1	2	0	MYL12A	1429	chr18:3247907:+	TGIF1	23110	chr18:3456352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	MYL12A->chr18:3247479-3256234:+,myosin_light_chain_12A,TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+	KYSE510_OESOPHAGUS	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	RP4-756H11.3--IRX2	2	0	RP4-756H11.3	1089	chr7:66119613:+	IRX2	12216	chr5:2749901:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	RP4-756H11.3->chr7:66119525-66134842:+,IRX2->chr5:2745959-2752969:-,iroquois_homeobox_2	KYSE510_OESOPHAGUS	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	SPIN1--GNAS	2	0	SPIN1	1120	chr9:91003453:+	GNAS	33527	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx&tcga_normals:1/3694=0.03%,SPIN1->chr9:91003334-91093609:+,spindlin_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KYSE510_OESOPHAGUS	1	1	0.0259	TRUE	0	1	0	4	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	PDK1--RP11-127H5.1	1	3	PDK1	13815	chr2:173460751:+	RP11-127H5.1	40433	chr8:106258521:+	ONLY_REF_SPLICE	YES	22	0	0.15	1	0.0129	0.0388	PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1,RP11-127H5.1->chr8:105602961-106431488:+	KYSE510_OESOPHAGUS	0.15	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000824
HCC95_LUNG	AKR1C1--AKR1E2	210	39	AKR1C1	6934	chr10:5005720:+	AKR1E2	28363	chr10:4872867:+	ONLY_REF_SPLICE	YES	408	10	0.38	0.96	2.2866	0.4247	DGD_PARALOGS,GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Brain=[count:3=pct:0.5],Blood=[count:1=pct:0.6]},HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[44542],AKR1C1->aldo-keto_reductase_family_1,_member_C1,chr10:4934796-5025475:+,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	HCC95_LUNG	0.38	0.96	2.7113	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	CD44--RP11-187C18.4	165	123	CD44	1501	chr11:35160917:+	RP11-187C18.4	30728	chr9:45424634:-	ONLY_REF_SPLICE	YES	6823	0	0.04	1	1.7966	1.3393	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,RP11-187C18.4->chr9:45424050-45424634:-	HCC95_LUNG	0.04	1	3.1359	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	NCOA2--TRAM1	83	23	NCOA2	1106	chr8:71315935:-	TRAM1	45391	chr8:71496028:-	ONLY_REF_SPLICE	YES	3	526	0.97	0.17	0.9038	0.2504	NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,TRAM1->chr8:71485677-71520622:-,translocation_associated_membrane_protein_1	HCC95_LUNG	0.17	0.97	1.1542	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	IQGAP1--ZNF774	44	19	IQGAP1	2279	chr15:90934105:+	ZNF774	45234	chr15:90897874:+	ONLY_REF_SPLICE	YES	141	16	0.31	0.8	0.4791	0.2069	LOCAL_REARRANGEMENT:+:[22126],IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,ZNF774->chr15:90895477-90909324:+,zinc_finger_protein_774	HCC95_LUNG	0.31	0.8	0.686	TRUE	0	4	0	2	4	TRUE	ACH-000454
HCC95_LUNG	AKR1C1--AKR1E2	35	43	AKR1C1	6934	chr10:5005720:+	AKR1E2	26099	chr10:4867154:+	ONLY_REF_SPLICE	YES	408	0	0.16	1	0.3811	0.4682	DGD_PARALOGS,GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Brain=[count:3=pct:0.5],Blood=[count:1=pct:0.6]},HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[44542],AKR1C1->aldo-keto_reductase_family_1,_member_C1,chr10:4934796-5025475:+,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	HCC95_LUNG	0.16	1	0.8493	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	PPP2CB--TEX15	40	13	PPP2CB	2987	chr8:30669836:-	TEX15	25598	chr8:30706832:-	ONLY_REF_SPLICE	YES	169	2	0.24	0.96	0.4355	0.1416	LOCAL_REARRANGEMENT:-:[17230],PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta,TEX15->chr8:30689060-30748122:-,testis_expressed_15	HCC95_LUNG	0.24	0.96	0.5771	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	PPP2R3A--GCNT2	42	5	PPP2R3A	1177	chr3:135684691:+	GCNT2	30894	chr6:10527707:+	ONLY_REF_SPLICE	YES	6	0	0.89	1	0.4573	0.0544	PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha,GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group)	HCC95_LUNG	0.89	1	0.5117	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	EPB41L1--NR4A3	25	1	EPB41L1	1372	chr20:34679797:+	NR4A3	50489	chr9:102625902:+	ONLY_REF_SPLICE	YES	11	1	0.7	0.96	0.2722	0.0109	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,NR4A3->Oncogene{Bushman},chr9:102584137-102629173:+,nuclear_receptor_subfamily_4_group_A_member_3	HCC95_LUNG	0.7	0.96	0.2831	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	NCOA2--TRAM1	15	31	NCOA2	2531	chr8:71314398:-	TRAM1	45391	chr8:71496028:-	ONLY_REF_SPLICE	YES	5	526	0.9	0.08	0.1633	0.3375	NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,TRAM1->chr8:71485677-71520622:-,translocation_associated_membrane_protein_1	HCC95_LUNG	0.08	0.9	0.5008	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	LDLRAD3--TEKT4P2	19	1	LDLRAD3	1164	chr11:35965694:+	TEKT4P2	18646	chr21:9966380:-	ONLY_REF_SPLICE	YES	53	6	0.27	0.77	0.2069	0.0109	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,TEKT4P2->chr21:9907190-9968585:-,tektin_4_pseudogene_2	HCC95_LUNG	0.27	0.77	0.2178	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	EPB41L1--NR4A3	14	3	EPB41L1	2310	chr20:34680735:+	NR4A3	50489	chr9:102625902:+	ONLY_REF_SPLICE	YES	23	1	0.42	0.94	0.1524	0.0327	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,NR4A3->Oncogene{Bushman},chr9:102584137-102629173:+,nuclear_receptor_subfamily_4_group_A_member_3	HCC95_LUNG	0.42	0.94	0.1851	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	NEK7--SYK	13	2	NEK7	1314	chr1:198126406:+	SYK	27173	chr9:93607716:+	ONLY_REF_SPLICE	YES	23	108	0.39	0.12	0.1416	0.0218	NEK7->NIMA_related_kinase_7,chr1:198126093-198291550:+,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase	HCC95_LUNG	0.12	0.39	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	PPP2R3A--GCNT2	13	1	PPP2R3A	1177	chr3:135684691:+	GCNT2	40620	chr6:10621584:+	ONLY_REF_SPLICE	YES	6	10	0.7	0.58	0.1416	0.0109	PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha,GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group)	HCC95_LUNG	0.58	0.7	0.1525	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	AC007403.2--LRRTM4	11	4	AC007403.2	5504	chr2:67172606:+	LRRTM4	19327	chr2:76976042:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1198	0.0436	AC007403.2->chr2:67131568-67198594:+,LRRTM4->chr2:76974845-77820445:-,leucine_rich_repeat_transmembrane_neuronal_4	HCC95_LUNG	1	1	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	MOB1A--SERTAD2	10	5	MOB1A	5351	chr2:74392345:-	SERTAD2	18871	chr2:64864009:-	ONLY_REF_SPLICE	YES	274	20	0.05	0.43	0.1089	0.0544	MOB1A->MOB_kinase_activator_1A,chr2:74379655-74406025:-,SERTAD2->SERTA_domain_containing_2,chr2:64858755-64978139:-	HCC95_LUNG	0.05	0.43	0.1633	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	SYK--ROR2	10	3	SYK	4964	chr9:93607876:+	ROR2	42286	chr9:94325611:-	ONLY_REF_SPLICE	YES	125	0	0.09	1	0.1089	0.0327	PROTCLUST,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,ROR2->Oncogene{Bushman},chr9:94325373-94712444:-,receptor_tyrosine_kinase_like_orphan_receptor_2	HCC95_LUNG	0.09	1	0.1416	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	AGPS--HNRNPA3	9	4	AGPS	2496	chr2:178285086:+	HNRNPA3	37869	chr2:178086788:+	INCL_NON_REF_SPLICE	YES	68	138	0.16	0.09	0.098	0.0436	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,HNRNPA3->Oncogene{Bushman},chr2:178077291-178088686:+,heterogeneous_nuclear_ribonucleoprotein_A3	HCC95_LUNG	0.09	0.16	0.1416	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	IQGAP1--ZNF774	8	8	IQGAP1	2279	chr15:90934105:+	ZNF774	47009	chr15:90902083:+	ONLY_REF_SPLICE	YES	141	17	0.1	0.48	0.0871	0.0871	LOCAL_REARRANGEMENT:+:[22126],IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,ZNF774->chr15:90895477-90909324:+,zinc_finger_protein_774	HCC95_LUNG	0.1	0.48	0.1742	TRUE	0	2	0	2	2	TRUE	ACH-000454
HCC95_LUNG	BOLA3--AC007403.3	9	2	BOLA3	4895	chr2:74369399:-	AC007403.3	9579	chr2:67268100:+	INCL_NON_REF_SPLICE	YES	178	0	0.06	1	0.098	0.0218	BOLA3->bolA_family_member_3,chr2:74362525-74375121:-,AC007403.3->chr2:67267678-67269098:+	HCC95_LUNG	0.06	1	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	LRP8--SLC25A3P1	8	3	LRP8	10422	chr1:53736700:-	SLC25A3P1	32565	chr1:53883338:-	ONLY_REF_SPLICE	YES	96	0	0.1	1	0.0871	0.0327	LOCAL_REARRANGEMENT:-:[85079],LRP8->LDL_receptor_related_protein_8,chr1:53711217-53793742:-,SLC25A3P1->chr1:53878821-53905693:-,solute_carrier_family_25_member_3_pseudogene_1	HCC95_LUNG	0.1	1	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	LAMA5--GATA5	7	5	LAMA5	15448	chr20:60908957:-	GATA5	44453	chr20:61050598:-	ONLY_REF_SPLICE	YES	170	0	0.07	1	0.0762	0.0544	LOCAL_REARRANGEMENT:-:[96185],LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,GATA5->GATA_binding_protein_5,chr20:61038553-61051026:-	HCC95_LUNG	0.07	1	0.1306	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	SYK--MROH3P	7	4	SYK	1107	chr9:93564175:+	MROH3P	28305	chr1:200917220:+	INCL_NON_REF_SPLICE	YES	46	0	0.19	1	0.0762	0.0436	SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	HCC95_LUNG	0.19	1	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	RP11-782C8.5--ZNF595	7	3	RP11-782C8.5	12334	chr1:143217310:-	ZNF595	21950	chr4:67732:+	ONLY_REF_SPLICE	YES	0	44	1	0.19	0.0762	0.0327	RP11-782C8.5->chr1:143211628-143240439:-,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	HCC95_LUNG	0.19	1	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	TPST1--TRIM47	6	6	TPST1	5907	chr7:65751696:+	TRIM47	16326	chr17:73872894:-	ONLY_REF_SPLICE	YES	36	86	0.25	0.12	0.0653	0.0653	TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,TRIM47->chr17:73870242-73874656:-,tripartite_motif_containing_47	HCC95_LUNG	0.12	0.25	0.1306	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	AC007403.2--AC018462.2	7	1	AC007403.2	5504	chr2:67172606:+	AC018462.2	16407	chr2:62317936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0762	0.0109	AC007403.2->chr2:67131568-67198594:+,AC018462.2->chr2:62296582-62374016:-	HCC95_LUNG	1	1	0.0871	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	DOCK4--CALN1	6	2	DOCK4	1310	chr7:111846157:-	CALN1	69651	chr7:71571279:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0653	0.0218	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,CALN1->calneuron_1,chr7:71244476-71912136:-	HCC95_LUNG	0.89	1	0.0871	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	SYK--MROH3P	5	2	SYK	1253	chr9:93564321:+	MROH3P	31069	chr1:200926427:+	INCL_NON_REF_SPLICE	YES	103	2	0.06	0.78	0.0544	0.0218	SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	HCC95_LUNG	0.06	0.78	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	JUP--EEF1G	5	0	JUP	7190	chr17:39925235:-	EEF1G	26020	chr11:62340142:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	GTEx&tcga_normals:1/3694=0.03%,JUP->chr17:39775692-39943183:-,junction_plakoglobin,EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma	HCC95_LUNG	1	1	0.0544	TRUE	0	0	0	2	0	TRUE	ACH-000454
HCC95_LUNG	TPST1--TRIM47	4	3	TPST1	5907	chr7:65751696:+	TRIM47	16647	chr17:73872573:-	ONLY_REF_SPLICE	YES	36	113	0.16	0.06	0.0436	0.0327	TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,TRIM47->chr17:73870242-73874656:-,tripartite_motif_containing_47	HCC95_LUNG	0.06	0.16	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	SYK--MROH3P	4	2	SYK	1107	chr9:93564175:+	MROH3P	31069	chr1:200926427:+	INCL_NON_REF_SPLICE	YES	46	2	0.12	0.75	0.0436	0.0218	SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	HCC95_LUNG	0.12	0.75	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	SYK--MROH3P	3	4	SYK	1253	chr9:93564321:+	MROH3P	28305	chr1:200917220:+	INCL_NON_REF_SPLICE	YES	103	0	0.06	1	0.0327	0.0436	SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	HCC95_LUNG	0.06	1	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	TAOK2--RRN3P2	4	0	TAOK2	1286	chr16:29985247:+	RRN3P2	27232	chr16:29102061:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	TAOK2->TAO_kinase_2,chr16:29984962-30003582:+,RRN3P2->RRN3_homolog,_RNA_polymerase_I_transcription_factor_pseudogene_2,chr16:29086163-29128039:+	HCC95_LUNG	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	NFKBIL1--HCP5	3	1	NFKBIL1	2570	chr6:31516216:+	HCP5	9766	chr6:31430900:+	ONLY_REF_SPLICE	YES	69	0	0.05	1	0.0327	0.0109	LOCAL_REARRANGEMENT:+:[69364],NFKBIL1->NFKB_inhibitor_like_1,chr6:31514647-31526606:+,HCP5->HLA_complex_P5_(non-protein_coding),chr6:31368479-31445283:+	HCC95_LUNG	0.05	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	STAG1--RP11-731C17.1	3	1	STAG1	1184	chr3:136471037:-	RP11-731C17.1	45584	chr3:136527876:-	INCL_NON_REF_SPLICE	YES	65	0	0.06	1	0.0327	0.0109	LOCAL_REARRANGEMENT:-:[56173],STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,RP11-731C17.1->chr3:136527393-136528465:-	HCC95_LUNG	0.06	1	0.0436	TRUE	0	1	0	2	1	TRUE	ACH-000454
HCC95_LUNG	NAV1--LYST	2	2	NAV1	23314	chr1:201763705:+	LYST	107661	chr1:235866277:-	ONLY_REF_SPLICE	YES	17	2	0.19	0.67	0.0218	0.0218	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator	HCC95_LUNG	0.19	0.67	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	PPP2R3A--GCNT2	2	2	PPP2R3A	1177	chr3:135684691:+	GCNT2	32051	chr6:10528864:+	ONLY_REF_SPLICE	NO	6	18	0.4	0.18	0.0218	0.0218	PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha,GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group)	HCC95_LUNG	0.18	0.4	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	LRP8--SLC25A3P1	1	5	LRP8	10422	chr1:53736700:-	SLC25A3P1	29551	chr1:53904721:-	ONLY_REF_SPLICE	YES	96	12	0.06	0.33	0.0109	0.0544	LOCAL_REARRANGEMENT:-:[85079],LRP8->LDL_receptor_related_protein_8,chr1:53711217-53793742:-,SLC25A3P1->chr1:53878821-53905693:-,solute_carrier_family_25_member_3_pseudogene_1	HCC95_LUNG	0.06	0.33	0.0653	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	RP11-711M9.1--AC007880.1	2	1	RP11-711M9.1	1181	chr2:74213833:+	AC007880.1	6924	chr2:65076681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0.0109	RP11-711M9.1->chr2:74213653-74220867:+,AC007880.1->chr2:65073264-65090760:-	HCC95_LUNG	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	SYK--MROH3P	2	1	SYK	1107	chr9:93564175:+	MROH3P	33824	chr1:200929460:+	ONLY_REF_SPLICE	YES	46	4	0.06	0.43	0.0218	0.0109	SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	HCC95_LUNG	0.06	0.43	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	CELF1--C9orf3	2	0	CELF1	9302	chr11:47521005:-	C9orf3	58942	chr9:97783960:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HCC95_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	CENPK--IVNS1ABP	2	0	CENPK	14117	chr5:64817302:-	IVNS1ABP	25459	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	CENPK->centromere_protein_K,chr5:64813593-64858998:-,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	HCC95_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	CTNNA1--MATR3	2	0	CTNNA1	17161	chr5:138163407:+	MATR3	58734	chr5:138650364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	HCC95_LUNG	1	1	0.0218	TRUE	0	0	0	6	0	TRUE	ACH-000454
HCC95_LUNG	G3BP1--CTD-2410N18.5	2	0	G3BP1	1992	chr5:151151597:+	CTD-2410N18.5	27988	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTD-2410N18.5->chr5:133502861-133561762:-	HCC95_LUNG	1	1	0.0218	TRUE	0	0	0	4	0	TRUE	ACH-000454
HCC95_LUNG	LDLRAD3--CD44	2	0	LDLRAD3	1164	chr11:35965694:+	CD44	35840	chr11:35236399:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	{Klijn_CCL:Skin=1},LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	HCC95_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	UBA2--PDCD2L	2	0	UBA2	1219	chr19:34919475:+	PDCD2L	27389	chr19:34912424:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	LOCAL_REARRANGEMENT:+:[2184],UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2,PDCD2L->chr19:34895289-34917073:+,programmed_cell_death_2-like	HCC95_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	EML6--DCTN1	1	1	EML6	2760	chr2:54952395:+	DCTN1	61838	chr2:74605372:-	ONLY_REF_SPLICE	NO	2	20	0.5	0.09	0.0109	0.0109	EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6,DCTN1->chr2:74588281-74619214:-,dynactin_subunit_1	HCC95_LUNG	0.09	0.5	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	EPB41L1--NR4A3	1	1	EPB41L1	1109	chr20:34679534:+	NR4A3	50489	chr9:102625902:+	ONLY_REF_SPLICE	YES	5	1	0.29	0.67	0.0109	0.0109	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,NR4A3->Oncogene{Bushman},chr9:102584137-102629173:+,nuclear_receptor_subfamily_4_group_A_member_3	HCC95_LUNG	0.29	0.67	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	ZCCHC14--KLHDC4	1	1	ZCCHC14	1377	chr16:87525275:-	KLHDC4	37957	chr16:87748179:-	ONLY_REF_SPLICE	YES	7	37	0.22	0.05	0.0109	0.0109	ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14,KLHDC4->chr16:87730091-87799598:-,kelch_domain_containing_4	HCC95_LUNG	0.05	0.22	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC42--CELA3A	49	0	CDC42	1116	chr1:22379235:+	CELA3A	14952	chr1:22329496:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4268	0	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4268	TRUE	0	1	0	1	1	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMURF1--KPNA7	26	3	SMURF1	1375	chr7:98741349:-	KPNA7	31998	chr7:98792961:-	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.2265	0.0261	LOCAL_REARRANGEMENT:-:[29474],SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.2526	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC42--CELA3A	20	0	CDC42	1116	chr1:22379235:+	CELA3A	16038	chr1:22331940:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1742	0	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1742	TRUE	0	1	0	1	1	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMURF1--KPNA7	18	2	SMURF1	1375	chr7:98741349:-	KPNA7	33267	chr7:98790724:-	ONLY_REF_SPLICE	YES	2	7	0.91	0.74	0.1568	0.0174	LOCAL_REARRANGEMENT:-:[29474],SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.91	0.1742	TRUE	0	1	0	1	1	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AHCTF1--ZNF670	15	6	AHCTF1	14213	chr1:247059137:-	ZNF670	58402	chr1:247109129:-	ONLY_REF_SPLICE	YES	23	18	0.48	0.54	0.1307	0.0523	LOCAL_REARRANGEMENT:-:[13569],AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.54	0.183	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC42--CELA3A	14	0	CDC42	1116	chr1:22379235:+	CELA3A	19107	chr1:22336198:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.122	0	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.122	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC42--CELA3A	9	0	CDC42	1116	chr1:22379235:+	CELA3A	17964	chr1:22333866:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0784	0	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AHCTF1--ZNF670	5	7	AHCTF1	15303	chr1:247057961:-	ZNF670	58402	chr1:247109129:-	ONLY_REF_SPLICE	YES	19	18	0.39	0.4	0.0436	0.061	LOCAL_REARRANGEMENT:-:[13569],AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.4	0.1046	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMURF1--KPNA7	5	3	SMURF1	1375	chr7:98741349:-	KPNA7	31170	chr7:98793789:-	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0436	0.0261	LOCAL_REARRANGEMENT:-:[29474],SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC42--CELA3A	5	0	CDC42	1116	chr1:22379235:+	CELA3A	14989	chr1:22329533:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	1	0	1	1	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRD8--RAD9A	2	0	BRD8	2416	chr5:137513260:-	RAD9A	31392	chr11:67160967:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	BRD8->bromodomain_containing_8,chr5:137475455-137514675:-,RAD9A->Oncogene{Bushman},RAD9_checkpoint_clamp_component_A,chr11:67159176-67165881:+	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMC2--WDR60	2	0	CMC2	2457	chr16:81040339:-	WDR60	38261	chr7:158716262:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-,WDR60->WD_repeat_domain_60,chr7:158649269-158749438:+	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR3--FAM132A	2	0	DSCR3	1724	chr21:38639539:-	FAM132A	22001	chr1:1179877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,FAM132A->chr1:1177826-1182102:-,family_with_sequence_similarity_132_member_A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIF1A--PRKCH	2	0	HIF1A	1327	chr14:62162557:+	PRKCH	48659	chr14:61952220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	1	15	1	9	1	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFV3--CAMLG	2	0	NDUFV3	5809	chr21:44317157:+	CAMLG	19099	chr5:134079677:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,CAMLG->calcium_modulating_ligand,chr5:134074191-134087847:+	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--NT5DC2	2	0	PPP1R12C	8950	chr19:55610152:-	NT5DC2	23494	chr3:52563350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,NT5DC2->5'-nucleotidase_domain_containing_2,chr3:52558386-52569070:-	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SPTSSA	2	0	RCC1	2175	chr1:28834672:+	SPTSSA	20139	chr14:34904510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SPTSSA->chr14:34901995-34931562:-,serine_palmitoyltransferase_small_subunit_A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAG2--THOC2	2	0	STAG2	2895	chrX:123095956:+	THOC2	77578	chrX:122748040:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	GTEx&tcga_normals:1/3694=0.03%,STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,THOC2->THO_complex_2,chrX:122734412-122866906:-	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB1--BMI1	2	0	ZEB1	1798	chr10:31608221:+	BMI1	31789	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	4	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF736--CUX1	2	0	ZNF736	8361	chr7:63797360:+	CUX1	65680	chr7:101916637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
KP2_PANCREAS	RPL14--AC005540.3	262	1	RPL14	4483	chr3:40503515:+	AC005540.3	8966	chr2:191745649:-	INCL_NON_REF_SPLICE	YES	2271	1	0.1	1	3.1421	0.012	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	0.1	1	3.1541	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	57	0	RPL14	4486	chr3:40503518:+	AC005540.3	8972	chr2:191745643:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6836	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	1	1	0.6836	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	35	0	RPL14	4486	chr3:40503518:+	AC005540.3	8975	chr2:191745640:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4197	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	1	1	0.4197	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	15	1	RPL14	4492	chr3:40503524:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	2009	1	0.01	0.94	0.1799	0.012	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	0.01	0.94	0.1919	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	9	0	RPL14	4476	chr3:40503508:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1079	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	1	1	0.1079	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	STK40--CSF3R	6	8	STK40	1174	chr1:36851324:-	CSF3R	22025	chr1:36947138:-	ONLY_REF_SPLICE	YES	16	0	0.47	1	0.072	0.0959	LOCAL_REARRANGEMENT:-:[80147],STK40->chr1:36805225-36851497:-,serine/threonine_kinase_40,CSF3R->Oncogene{Bushman},chr1:36931644-36948879:-,colony_stimulating_factor_3_receptor	KP2_PANCREAS	0.47	1	0.1679	TRUE	0	0	0	1	0	TRUE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	7	0	RPL14	4488	chr3:40503520:+	AC005540.3	8971	chr2:191745644:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	1	1	0.0839	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	7	0	RPL14	4488	chr3:40503520:+	AC005540.3	8974	chr2:191745641:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	1	1	0.0839	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	4	0	RPL14	4486	chr3:40503518:+	AC005540.3	8978	chr2:191745637:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.048	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	1	1	0.048	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	MTAP--RP11-399D6.2	3	1	MTAP	12211	chr9:21859424:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	63	0	0.06	1	0.036	0.012	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	KP2_PANCREAS	0.06	1	0.048	TRUE	0	0	0	2	0	TRUE	ACH-000281
KP2_PANCREAS	MTAP--RP11-399D6.2	3	1	MTAP	9899	chr9:21854869:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	44	0	0.08	1	0.036	0.012	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	KP2_PANCREAS	0.08	1	0.048	TRUE	0	0	0	4	0	TRUE	ACH-000281
KP2_PANCREAS	COPS7B--DIS3L2	2	0	COPS7B	1213	chr2:232646593:+	DIS3L2	22784	chr2:232888987:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	COPS7B->COP9_signalosome_subunit_7B,chr2:232646381-232673963:+,DIS3L2->DIS3_like_3'-5'_exoribonuclease_2,chr2:232825955-233209060:+	KP2_PANCREAS	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000281
KP2_PANCREAS	HDAC9--RPS27A	2	0	HDAC9	30339	chr7:18706099:+	RPS27A	59424	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	HDAC9->chr7:18126572-19042039:+,histone_deacetylase_9,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	KP2_PANCREAS	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000281
KP2_PANCREAS	USP32--PPM1D	2	0	USP32	3790	chr17:58469243:-	PPM1D	50096	chr17:58711214:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D	KP2_PANCREAS	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000281
CORL24_LUNG	DNM2--ILF3	20	9	DNM2	1325	chr19:10829079:+	ILF3	58067	chr19:10799855:+	ONLY_REF_SPLICE	YES	103	278	0.22	0.09	0.2319	0.1043	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:+:[25662],DNM2->chr19:10828755-10944164:+,dynamin_2,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	CORL24_LUNG	0.09	0.22	0.3362	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	ARMC4P1--RP11-748L13.2	18	11	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2087	0.1275	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	CORL24_LUNG	1	1	0.3362	TRUE	1	34	11	8	34	TRUE	ACH-000382
CORL24_LUNG	DNM2--ILF3	10	14	DNM2	1325	chr19:10829079:+	ILF3	57438	chr19:10799226:+	ONLY_REF_SPLICE	YES	103	192	0.19	0.11	0.1159	0.1623	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:+:[25662],DNM2->chr19:10828755-10944164:+,dynamin_2,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	CORL24_LUNG	0.11	0.19	0.2782	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	MALAT1--FRMD8	7	6	MALAT1	4053	chr11:65268285:+	FRMD8	20747	chr11:65172335:+	INCL_NON_REF_SPLICE	YES	84	73	0.13	0.15	0.0812	0.0696	LOCAL_REARRANGEMENT:+:[84237],MALAT1->chr11:65265233-65273940:+,metastasis_associated_lung_adenocarcinoma_transcript_1_(non-protein_coding),FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	CORL24_LUNG	0.13	0.15	0.1508	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	CCNY--CREM	6	5	CCNY	7835	chr10:35626135:+	CREM	28939	chr10:35437296:+	ONLY_REF_SPLICE	YES	96	25	0.1	0.31	0.0696	0.058	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:+:[34067],CCNY->chr10:35535953-35860852:+,cyclin_Y,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	CORL24_LUNG	0.1	0.31	0.1276	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	MAST1--ZNF791	6	4	MAST1	6966	chr19:12958871:+	ZNF791	27790	chr19:12738535:+	ONLY_REF_SPLICE	YES	85	27	0.11	0.27	0.0696	0.0464	MAST1->chr19:12944765-12985765:+,microtubule_associated_serine/threonine_kinase_1,ZNF791->chr19:12721732-12742735:+,zinc_finger_protein_791	CORL24_LUNG	0.11	0.27	0.116	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	TUBB3--SPIRE2	5	3	TUBB3	5261	chr16:89989866:+	SPIRE2	21336	chr16:89911730:+	ONLY_REF_SPLICE	YES	97	4	0.08	0.67	0.058	0.0348	LOCAL_INVERSION:+,chr16:+:[47846],TUBB3->chr16:89985573-90002500:+,chr16:89987800-90005169:+,tubulin_beta_3_class_III,SPIRE2->chr16:89884587-89937727:+,spire_type_actin_nucleation_factor_2	CORL24_LUNG	0.08	0.67	0.0928	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	DPP9--ARRDC5	4	1	DPP9	16936	chr19:4695390:-	ARRDC5	34598	chr19:4891585:-	ONLY_REF_SPLICE	YES	64	0	0.07	1	0.0464	0.0116	DPP9->chr19:4675236-4724685:-,dipeptidyl_peptidase_9,ARRDC5->arrestin_domain_containing_5,chr19:4890449-4902879:-	CORL24_LUNG	0.07	1	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	EPHX1--DNAH14	4	0	EPHX1	1078	chr1:225997871:+	DNAH14	107240	chr1:225562390:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	EPHX1->chr1:225997794-226033260:+,epoxide_hydrolase_1,DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14	CORL24_LUNG	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	ME3--SLC27A2	3	2	ME3	10123	chr11:86198379:-	SLC27A2	30602	chr15:50515162:+	ONLY_REF_SPLICE	YES	20	32	0.2	0.14	0.0348	0.0232	ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3,SLC27A2->chr15:50474393-50528592:+,solute_carrier_family_27_member_2	CORL24_LUNG	0.14	0.2	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	LRRFIP2--GOLGA4	3	0	LRRFIP2	9741	chr3:37190385:-	GOLGA4	46463	chr3:37292886:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[59488],LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2,GOLGA4->chr3:37284668-37408242:+,golgin_A4	CORL24_LUNG	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	CAMTA1--ZFAND6	2	0	CAMTA1	32599	chr1:7812593:+	ZFAND6	45974	chr15:80390758:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,ZFAND6->chr15:80351910-80430735:+,zinc_finger_AN1-type_containing_6	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	CCDC23--RTN1	2	0	CCDC23	1853	chr1:43282102:-	RTN1	15539	chr14:60074210:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CCDC23->chr1:43272723-43282954:-,RTN1->chr14:60062694-60337684:-,reticulon_1	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	CPNE3--KIAA1429	2	0	CPNE3	10340	chr8:87549874:+	KIAA1429	44556	chr8:95518945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CPNE3->chr8:87497059-87573726:+,copine_3,KIAA1429->KIAA1429,chr8:95499921-95565757:-	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	CTD-2035E11.3--IGLVI-63	2	0	CTD-2035E11.3	1244	chr5:43018774:+	IGLVI-63	6374	chr22:22434336:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CTD-2035E11.3->chr5:43018531-43024349:+,IGLVI-63->chr22:22434180-22434673:+,immunoglobulin_lambda_variable_(I)-63_(pseudogene)	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	EIF3J--ZBTB8OS	2	0	EIF3J	4326	chr15:44846865:+	ZBTB8OS	19199	chr1:33087549:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J,ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	EPHX1--DNAH14	2	0	EPHX1	1524	chr1:225998317:+	DNAH14	107240	chr1:225562390:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	EPHX1->chr1:225997794-226033260:+,epoxide_hydrolase_1,DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	GARNL3--ATL2	2	0	GARNL3	11206	chr9:130080406:+	ATL2	62526	chr2:38523255:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+,ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	MTFR1--TASP1	2	0	MTFR1	4755	chr8:66594686:+	TASP1	36556	chr20:13463984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,TASP1->chr20:13246709-13619587:-,taspase_1	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	NUMBL--ZNF638	2	0	NUMBL	5989	chr19:41190322:-	ZNF638	43444	chr2:71623271:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	NUMBL->NUMB_like,_endocytic_adaptor_protein,chr19:41172596-41196877:-,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	PPP6R3--FEZ1	2	0	PPP6R3	1110	chr11:68228295:+	FEZ1	41305	chr11:125359718:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:1/3694=0.03%,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,FEZ1->chr11:125315646-125366213:-,fasciculation_and_elongation_protein_zeta_1	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	PRRC2C--RP11-466F5.8	2	0	PRRC2C	34943	chr1:171549103:+	RP11-466F5.8	47925	chr1:165742711:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C,RP11-466F5.8->chr1:165738166-165744413:+	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RASA4B--RNF41	2	0	RASA4B	7730	chr7:102141146:-	RNF41	29157	chr12:56602082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RASA4B->RAS_p21_protein_activator_4B,chr7:102122892-102158228:-,RNF41->chr12:56598285-56615717:-,ring_finger_protein_41	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RIC8A--CCNL1	2	0	RIC8A	2428	chr11:208938:+	CCNL1	20133	chr3:156868170:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RIC8A->RIC8_guanine_nucleotide_exchange_factor_A,chr11:207511-215113:+,CCNL1->chr3:156864297-156878549:-,cyclin_L1	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RLF--TDRD7	2	0	RLF	5837	chr1:40668286:+	TDRD7	35608	chr9:100245131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,TDRD7->chr9:100174232-100258407:+,tudor_domain_containing_7	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RP11-135A1.2--RP1-179N16.6	2	0	RP11-135A1.2	1068	chr3:193848923:-	RP1-179N16.6	5622	chr6:36163947:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RP11-135A1.2->chr3:193848405-193848990:-,RP1-179N16.6->chr6:36114475-36164982:-	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RP5-1112D6.4--EIF2S1	2	0	RP5-1112D6.4	1227	chr6:111599361:+	EIF2S1	12672	chr14:67849164:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RP5-1112D6.4->chr6:111599135-111599945:+,EIF2S1->chr14:67826714-67853233:+,eukaryotic_translation_initiation_factor_2_subunit_alpha	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RPL30--LAPTM4B	2	0	RPL30	2527	chr8:99057171:-	LAPTM4B	17876	chr8:98863625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	CORL24_LUNG	1	1	0.0232	TRUE	0	1	0	5	0	TRUE	ACH-000382
CORL24_LUNG	SEPT2--STXBP5L	2	0	SEPT2	9377	chr2:242274627:+	STXBP5L	25072	chr3:120628418:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2,STXBP5L->chr3:120626919-121143608:+,syntaxin_binding_protein_5_like	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	TCF4--DYRK1A	2	0	TCF4	16813	chr18:53128250:-	DYRK1A	63934	chr21:38792601:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TCF4->chr18:52889562-53332018:-,transcription_factor_4,DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	TUBA1B--RBM17	2	0	TUBA1B	1100	chr12:49525081:-	RBM17	11998	chr10:6146894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,RBM17->RNA_binding_motif_protein_17,chr10:6130950-6159420:+	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	NRG1--NRG1-IT1	1	1	NRG1	2344	chr8:31498245:+	NRG1-IT1	37780	chr8:31996731:+	ONLY_REF_SPLICE	NO	11	0	0.15	1	0.0116	0.0116	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	CORL24_LUNG	0.15	1	0.0232	TRUE	0	3	0	4	3	TRUE	ACH-000382
PATU8988S_PANCREAS	SMARCA4--C19orf44	34	10	SMARCA4	37709	chr19:11152236:+	C19orf44	53380	chr19:16620310:+	ONLY_REF_SPLICE	YES	71	6	0.38	0.88	0.3171	0.0933	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	PATU8988S_PANCREAS	0.38	0.88	0.4104	TRUE	0	0	0	2	0	TRUE	ACH-000022
PATU8988S_PANCREAS	SMARCA4--C19orf44	7	3	SMARCA4	37709	chr19:11152236:+	C19orf44	54870	chr19:16623825:+	ONLY_REF_SPLICE	YES	71	12	0.12	0.45	0.0653	0.028	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	PATU8988S_PANCREAS	0.12	0.45	0.0933	TRUE	0	0	0	2	0	TRUE	ACH-000022
PATU8988S_PANCREAS	DNAJC2--SLC26A5	4	0	DNAJC2	1315	chr7:102985006:-	SLC26A5	41353	chr7:102993373:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	LOCAL_REARRANGEMENT:-:[7857],DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-,SLC26A5->chr7:102993177-103086624:-,solute_carrier_family_26_member_5	PATU8988S_PANCREAS	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000022
PATU8988S_PANCREAS	ARMC4P1--RP11-748L13.2	3	0	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	PATU8988S_PANCREAS	1	1	0.028	TRUE	1	34	11	8	34	TRUE	ACH-000022
PATU8988S_PANCREAS	MBD1--SERPINB6	3	0	MBD1	4710	chr18:47802748:-	SERPINB6	26303	chr6:2948933:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	MBD1->chr18:47793252-47808144:-,methyl-CpG_binding_domain_protein_1,SERPINB6->chr6:2948393-2972090:-,serpin_family_B_member_6	PATU8988S_PANCREAS	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000022
PATU8988S_PANCREAS	RP11-732M18.3--BCLAF1	3	0	RP11-732M18.3	1116	chr6:158703410:+	BCLAF1	20281	chr6:136582615:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	RP11-732M18.3->chr6:158703295-158733390:+,BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-	PATU8988S_PANCREAS	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000022
PATU8988S_PANCREAS	C17orf76-AS1--MKI67	2	0	C17orf76-AS1	1593	chr17:16342728:+	MKI67	16302	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	C17orf76-AS1->chr17:16342136-16381992:+,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	PATU8988S_PANCREAS	1	1	0.0187	TRUE	0	0	0	2	0	TRUE	ACH-000022
PATU8988S_PANCREAS	ELAC1--AKAP7	2	0	ELAC1	4905	chr18:48510933:+	AKAP7	14307	chr6:131481199:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	ELAC1->chr18:48494361-48514491:+,elaC_ribonuclease_Z_1,AKAP7->A-kinase_anchoring_protein_7,chr6:131456806-131604675:+	PATU8988S_PANCREAS	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000022
PATU8988S_PANCREAS	GPATCH1--PEPD	2	0	GPATCH1	1387	chr19:33572172:+	PEPD	31610	chr19:33980963:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GPATCH1->G-patch_domain_containing_1,chr19:33571786-33621448:+,PEPD->chr19:33877856-34012700:-,peptidase_D	PATU8988S_PANCREAS	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000022
PATU8988S_PANCREAS	HN1L--UBE2I	2	0	HN1L	1101	chr16:1728357:+	UBE2I	22624	chr16:1364021:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	PATU8988S_PANCREAS	1	1	0.0187	TRUE	0	0	0	2	0	TRUE	ACH-000022
PATU8988S_PANCREAS	HNRNPH1--FUS	2	0	HNRNPH1	4526	chr5:179050038:-	FUS	23431	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},HGNC_GENEFAM,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	PATU8988S_PANCREAS	1	1	0.0187	TRUE	1	1	0	2	0	TRUE	ACH-000022
PATU8988S_PANCREAS	SLIRP--CKLF	2	0	SLIRP	4730	chr14:78182222:+	CKLF	15377	chr16:66592093:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	SLIRP->SRA_stem-loop_interacting_RNA_binding_protein,chr14:78174414-78227447:+,CKLF->chemokine-like_factor,chr16:66586466-66600154:+	PATU8988S_PANCREAS	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000022
PATU8988S_PANCREAS	KLHL24--ABCC5	1	1	KLHL24	1180	chr3:183353535:+	ABCC5	45256	chr3:183671058:-	ONLY_REF_SPLICE	YES	8	28	0.2	0.07	0.0093	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},KLHL24->chr3:183353356-183402265:+,kelch_like_family_member_24,ABCC5->ATP_binding_cassette_subfamily_C_member_5,chr3:183637722-183735803:-	PATU8988S_PANCREAS	0.07	0.2	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000022
OV90_OVARY	STMND1--SNAP29	66	0	STMND1	2355	chr6:17110999:+	SNAP29	20802	chr22:21245338:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8187	0	STMND1->chr6:17102489-17131603:+,stathmin_domain_containing_1,SNAP29->chr22:21213271-21245506:+,synaptosome_associated_protein_29kDa	OV90_OVARY	1	1	0.8187	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	TM2D2--ADAM9	62	0	TM2D2	1406	chr8:38853938:-	ADAM9	12229	chr8:38865405:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.7691	0	LOCAL_INVERSION:-:+:[45],TM2D2->TM2_domain_containing_2,chr8:38846327-38854343:-,ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+	OV90_OVARY	1	1	0.7691	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	CDK14--RP11-115N4.1	12	3	CDK14	25131	chr7:90708795:+	RP11-115N4.1	41881	chr7:91096160:+	ONLY_REF_SPLICE	YES	16	0	0.48	1	0.1488	0.0372	CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14,RP11-115N4.1->chr7:90940683-91144724:+	OV90_OVARY	0.48	1	0.186	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	CRKL--SNAP29	4	0	CRKL	3286	chr22:21288532:+	SNAP29	16874	chr22:21241967:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0496	0	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[26208],CRKL->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:21271714-21308037:+,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog-like,SNAP29->chr22:21213271-21245506:+,synaptosome_associated_protein_29kDa	OV90_OVARY	1	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	ANKRD11--BBOX1	2	0	ANKRD11	4629	chr16:89484692:-	BBOX1	41223	chr11:27076943:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,BBOX1->chr11:27062272-27149356:+,gamma-butyrobetaine_hydroxylase_1	OV90_OVARY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	FBXO46--ATP6V1A	2	0	FBXO46	1056	chr19:46234107:-	ATP6V1A	11645	chr3:113497588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	FBXO46->F-box_protein_46,chr19:46213887-46234162:-,ATP6V1A->ATPase_H+_transporting_V1_subunit_A,chr3:113465866-113530903:+	OV90_OVARY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	PDDC1--TSPAN4	2	0	PDDC1	1090	chr11:777399:-	TSPAN4	19122	chr11:850288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_INVERSION:-:+:[65320],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,TSPAN4->chr11:842808-867116:+,tetraspanin_4	OV90_OVARY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	CDK14--RP11-115N4.1	1	3	CDK14	25131	chr7:90708795:+	RP11-115N4.1	42915	chr7:91143043:+	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0124	0.0372	CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14,RP11-115N4.1->chr7:90940683-91144724:+	OV90_OVARY	0.2	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	RAB5A--C8orf34	1	1	RAB5A	3041	chr3:19992553:+	C8orf34	37852	chr8:69728121:+	ONLY_REF_SPLICE	NO	33	0	0.06	1	0.0124	0.0124	RAB5A->RAB5A,_member_RAS_oncogene_family,chr3:19988571-20026667:+,C8orf34->chr8:69242957-69731257:+,chromosome_8_open_reading_frame_34	OV90_OVARY	0.06	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000291
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UHRF1--PLIN3	125	98	UHRF1	2792	chr19:4909667:+	PLIN3	22254	chr19:4867730:-	INCL_NON_REF_SPLICE	YES	146	0	0.6	1	1.7609	1.3805	LOCAL_INVERSION:+:-:[35312],UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,PLIN3->chr19:4838353-4867780:-,perilipin_3	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	3.1414	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRBV5-6--TRBC2	30	21	TRBV5-6	1322	chr7:142131597:-	TRBC2	4508	chr7:142498725:+	INCL_NON_REF_SPLICE	YES	129	0	0.28	1	0.4226	0.2958	HGNC_GENEFAM,TRBV5-6->T_cell_receptor_beta_variable_5-6,chr7:142131412-142131918:-,TRBC2->T_cell_receptor_beta_constant_2,chr7:142498725-142500432:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.7184	TRUE	0	3	0	1	3	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAG2--PTGER3	18	5	STAG2	32811	chrX:123217399:+	PTGER3	58428	chr1:71419472:-	ONLY_REF_SPLICE	YES	26	0	0.47	1	0.2536	0.0704	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,PTGER3->chr1:71318036-71513491:-,prostaglandin_E_receptor_3	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.324	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRBV5-6--TRBC2	5	46	TRBV5-6	1417	chr7:142131502:-	TRBC2	4508	chr7:142498725:+	INCL_NON_REF_SPLICE	YES	52	0	0.5	1	0.0704	0.648	HGNC_GENEFAM,TRBV5-6->T_cell_receptor_beta_variable_5-6,chr7:142131412-142131918:-,TRBC2->T_cell_receptor_beta_constant_2,chr7:142498725-142500432:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.7184	TRUE	0	3	0	1	3	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UHRF1--PLIN3	4	44	UHRF1	2792	chr19:4909667:+	PLIN3	24340	chr19:4861423:-	ONLY_REF_SPLICE	YES	146	12	0.25	0.8	0.0563	0.6198	LOCAL_INVERSION:+:-:[35312],UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,PLIN3->chr19:4838353-4867780:-,perilipin_3	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.8	0.6761	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV8-4--TRAC	5	24	TRAV8-4	1590	chr14:22363202:+	TRAC	4599	chr14:23016447:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0.3381	HGNC_GENEFAM,TRAV8-4->T_cell_receptor_alpha_variable_8-4,chr14:22362613-22363210:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4085	TRUE	1	0	0	2	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAG2--PTGER3	3	6	STAG2	32855	chrX:123217443:+	PTGER3	56887	chr1:71437004:-	INCL_NON_REF_SPLICE	YES	29	0	0.24	1	0.0423	0.0845	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,PTGER3->chr1:71318036-71513491:-,prostaglandin_E_receptor_3	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.1268	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRBV5-6--TRBC2	4	0	TRBV5-6	1090	chr7:142131829:-	TRBC2	5572	chr7:142499789:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0563	0	HGNC_GENEFAM,TRBV5-6->T_cell_receptor_beta_variable_5-6,chr7:142131412-142131918:-,TRBC2->T_cell_receptor_beta_constant_2,chr7:142498725-142500432:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0563	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRBV5-6--TRBC2	3	3	TRBV5-6	1090	chr7:142131829:-	TRBC2	4508	chr7:142498725:+	ONLY_REF_SPLICE	YES	31	0	0.16	1	0.0423	0.0423	HGNC_GENEFAM,TRBV5-6->T_cell_receptor_beta_variable_5-6,chr7:142131412-142131918:-,TRBC2->T_cell_receptor_beta_constant_2,chr7:142498725-142500432:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.0846	TRUE	0	3	0	1	3	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-290D2.6--CNTROB	3	0	RP11-290D2.6	2042	chr13:45915215:+	CNTROB	5523	chr17:7835796:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	RP11-290D2.6->chr13:45914174-45915318:+,CNTROB->centrobin,_centriole_duplication_and_spindle_assembly_protein,chr17:7835419-7853236:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNRD1--UBB	3	0	TXNRD1	11664	chr12:104682818:+	UBB	35705	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,UBB->chr17:16284112-16286059:+,ubiquitin_B	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF595--ZNF207	3	0	ZNF595	2931	chr4:60046:+	ZNF207	19807	chr17:30693684:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	HGNC_GENEFAM,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595,ZNF207->chr17:30677136-30708905:+,zinc_finger_protein_207	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC002116.7--GABPA	2	0	AC002116.7	3379	chr19:36510286:+	GABPA	9653	chr21:27113884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	AC002116.7->chr19:36505410-36536874:+,GABPA->GA_binding_protein_transcription_factor_alpha_subunit,chr21:27106881-27144771:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSTF3--CSNK1D	2	0	CSTF3	5593	chr11:33163213:-	CSNK1D	34991	chr17:80211120:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DKC1--DTYMK	2	0	DKC1	2294	chrX:153993241:+	DTYMK	22331	chr2:242618064:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	DKC1->Oncogene{Bushman},chrX:153991031-154005964:+,dyskerin_pseudouridine_synthase_1,DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EVL--NUCKS1	2	0	EVL	9362	chr14:100563995:+	NUCKS1	34339	chr1:205698749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+,NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IRF2--PTP4A2	2	0	IRF2	1202	chr4:185395533:-	PTP4A2	24873	chr1:32385259:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	IRF2->ArcherDX_panel,FoundationOne_panel,chr4:185308867-185395734:-,interferon_regulatory_factor_2,PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLF12--ARHGEF7	2	0	KLF12	1286	chr13:74708109:-	ARHGEF7	35147	chr13:111885552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	KLF12->Kruppel-like_factor_12,chr13:74260226-74708394:-,ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ME2--UBE2Z	2	0	ME2	1260	chr18:48405678:+	UBE2Z	25408	chr17:46993438:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ME2->chr18:48405419-48474691:+,malic_enzyme_2,UBE2Z->chr17:46985731-47006418:+,ubiquitin_conjugating_enzyme_E2_Z	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NAA15--SCOC	2	0	NAA15	16151	chr4:140283091:+	SCOC	41081	chr4:141300275:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+,SCOC->chr4:141178440-141306880:+,short_coiled-coil_protein	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFB6--MTAP	2	0	NDUFB6	1282	chr9:32572879:-	MTAP	13696	chr9:21816713:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	NDUFB6->NADH:ubiquinone_oxidoreductase_subunit_B6,chr9:32552997-32573160:-,MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NINL--TNFRSF14	2	0	NINL	2254	chr20:25507044:-	TNFRSF14	32989	chr1:2488024:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	NINL->chr20:25433341-25566153:-,ninein_like,TNFRSF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:2487078-2496821:+,tumor_necrosis_factor_receptor_superfamily_member_14	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPTLC1--FGFR1OP2	2	0	SPTLC1	3666	chr9:94871022:-	FGFR1OP2	24480	chr12:27109476:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	SPTLC1->chr9:94794281-94877666:-,serine_palmitoyltransferase_long_chain_base_subunit_1,FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRSF5--HMGB2	2	0	SRSF5	5075	chr14:70235613:+	HMGB2	13315	chr4:174254146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX8--SET	2	0	STX8	14031	chr17:9281869:-	SET	24742	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	STX8->chr17:9153788-9479908:-,syntaxin_8,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM120B--BCL7A	2	0	TMEM120B	5611	chr12:122190129:+	BCL7A	30394	chr12:122496998:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBR3--KIAA1715	2	0	UBR3	40669	chr2:170917953:+	KIAA1715	59293	chr2:176812420:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative),KIAA1715->KIAA1715,chr2:176788620-176867567:-	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VDAC3--AC147651.4	2	0	VDAC3	10241	chr8:42260979:+	AC147651.4	16386	chr7:647502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	VDAC3->chr8:42249142-42263415:+,voltage_dependent_anion_channel_3,AC147651.4->chr7:642822-648119:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YTHDC1--WTAP	2	0	YTHDC1	7077	chr4:69197821:-	WTAP	33397	chr6:160174492:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	YTHDC1->YTH_domain_containing_1,chr4:69176105-69215807:-,WTAP->Wilms_tumor_1_associated_protein,chr6:160146617-160177351:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZC3H13--LCP1	2	0	ZC3H13	1356	chr13:46626539:-	LCP1	39147	chr13:46733821:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	LOCAL_REARRANGEMENT:-:[73161],ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	2	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF7--GNAS	2	0	ZNF7	9341	chr8:146062892:+	GNAS	35468	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	1	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP36--RFX2	1	1	USP36	13970	chr17:76814749:-	RFX2	54323	chr19:6016282:-	ONLY_REF_SPLICE	NO	6	7	0.25	0.22	0.0141	0.0141	USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.25	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	49	15	IGKV2-30	1665	chr2:89544415:-	AC096579.7	9026	chr2:89130914:-	INCL_NON_REF_SPLICE	YES	16	0	0.8	1	0.422	0.1292	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.5512	TRUE	0	0	0	4	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR7--CCBE1	33	10	WDR7	3741	chr18:54346669:+	CCBE1	45892	chr18:57147470:-	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.2842	0.0861	{Klijn_CCL:Lymphoid=1},WDR7->WD_repeat_domain_7,chr18:54318574-54698828:+,CCBE1->chr18:57098172-57364612:-,collagen_and_calcium_binding_EGF_domains_1	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.3703	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARID2--TMEM117	29	7	ARID2	2571	chr12:46125097:+	TMEM117	41351	chr12:44693363:+	ONLY_REF_SPLICE	YES	8	4	0.82	0.9	0.2497	0.0603	{Klijn_CCL:Lymphoid=1},ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.9	0.31	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTNNB1--FARS2	27	9	CTNNB1	9853	chr3:41268843:+	FARS2	25670	chr6:5368783:+	ONLY_REF_SPLICE	YES	132	12	0.21	0.75	0.2325	0.0775	CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.75	0.31	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP2--DIP2C	13	3	SSBP2	1817	chr5:81046800:-	DIP2C	36410	chr10:532470:-	ONLY_REF_SPLICE	YES	9	0	0.64	1	0.1119	0.0258	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.1377	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCL3L1--IGL@	6	0	CCL3L1	1119	chr17:34625613:-	IGL@	8935	chr22:22516584:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	CCL3L1->C-C_motif_chemokine_ligand_3_like_1,chr17:34623842-34625731:-,IGL@->Oncogene{Bushman}	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BOP1--PTMA	2	0	BOP1	4671	chr8:145500212:-	PTMA	18089	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EDF1--BRD4	2	0	EDF1	2690	chr9:139757740:-	BRD4	18253	chr19:15367984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--RP5-882C2.2	2	0	NOC4L	5448	chr12:132633440:+	RP5-882C2.2	12147	chr17:42299830:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,RP5-882C2.2->chr17:42298769-42301078:+	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	2	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRD1--SSBP3	2	0	NRD1	29470	chr1:52260144:-	SSBP3	52470	chr1:54708972:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NRD1->chr1:52254863-52344477:-,SSBP3->Oncogene{Bushman},chr1:54691105-54879152:-,single_stranded_DNA_binding_protein_3	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUPL2--DAP3	2	0	NUPL2	3987	chr7:23226765:+	DAP3	30023	chr1:155708400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	2	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCED1B-AS1--SEPT2	2	0	PCED1B-AS1	1292	chr12:47609948:-	SEPT2	24624	chr2:242287549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	PCED1B-AS1->PCED1B_antisense_RNA_1,chr12:47599681-47610239:-,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM26--SLAIN1	2	0	RBM26	1774	chr13:79979839:-	SLAIN1	34507	chr13:78293667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-,SLAIN1->SLAIN_motif_family_member_1,chr13:78272023-78338377:+	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR181A1HG--SRP9	1	1	MIR181A1HG	1204	chr1:198906355:-	SRP9	10357	chr1:225965637:+	ONLY_REF_SPLICE	YES	1	44	0.67	0.04	0.0086	0.0086	MIR181A1HG->MIR181A1_host_gene,chr1:198776622-198906558:-,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.67	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000944
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--IL27RA	394	135	CDC37	6181	chr19:10505697:-	IL27RA	15925	chr19:14153265:+	ONLY_REF_SPLICE	YES	969	19	0.35	0.97	4.5796	1.5692	{Klijn_CCL:Lymphoid=1},CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,IL27RA->chr19:14142560-14163743:+,interleukin_27_receptor_subunit_alpha	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.97	6.1488	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPC4AP--ACSBG2	225	109	TRPC4AP	9141	chr20:33622926:-	ACSBG2	40906	chr19:6190595:+	ONLY_REF_SPLICE	YES	188	0	0.64	1	2.6153	1.267	{Klijn_CCL:Lymphoid=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,ACSBG2->acyl-CoA_synthetase_bubblegum_family_member_2,chr19:6135258-6193112:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	3.8823	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPC4AP--ACSBG2	182	65	TRPC4AP	9141	chr20:33622926:-	ACSBG2	42015	chr19:6192679:+	ONLY_REF_SPLICE	YES	188	7	0.57	0.97	2.1155	0.7555	{Klijn_CCL:Lymphoid=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,ACSBG2->acyl-CoA_synthetase_bubblegum_family_member_2,chr19:6135258-6193112:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	0.97	2.871	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTF2--DR1	139	85	MTF2	9012	chr1:93586229:+	DR1	24972	chr1:93826050:+	ONLY_REF_SPLICE	YES	101	259	0.69	0.46	1.6157	0.988	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.69	2.6037	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITCH--CATSPERD	111	45	ITCH	3377	chr20:32981687:+	CATSPERD	36429	chr19:5727279:+	ONLY_REF_SPLICE	YES	85	0	0.65	1	1.2902	0.5231	ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,CATSPERD->cation_channel_sperm_associated_auxiliary_subunit_delta,chr19:5720688-5778745:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	1.8133	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FREM1--MPDZ	107	31	FREM1	12959	chr9:14841445:-	MPDZ	74828	chr9:13162794:-	ONLY_REF_SPLICE	YES	359	0	0.28	1	1.2437	0.3603	FREM1->FRAS1_related_extracellular_matrix_1,chr9:14734664-14910993:-,MPDZ->chr9:13105703-13279589:-,multiple_PDZ_domain_crumbs_cell_polarity_complex_component	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	1.604	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTI1--TRPC4AP	31	8	TTI1	11775	chr20:36624777:-	TRPC4AP	17667	chr20:33665977:-	ONLY_REF_SPLICE	YES	35	263	0.53	0.13	0.3603	0.093	TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-,TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.53	0.4533	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTF2--DR1	3	85	MTF2	9234	chr1:93586451:+	DR1	24972	chr1:93826050:+	ONLY_REF_SPLICE	YES	104	259	0.46	0.25	0.0349	0.988	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.46	1.0229	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALGAPB--AP1M2	22	9	RALGAPB	15862	chr20:37161502:+	AP1M2	44552	chr19:10694746:-	ONLY_REF_SPLICE	YES	44	1	0.41	0.97	0.2557	0.1046	RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.97	0.3603	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTDC1--ZEB2	21	0	GTDC1	1130	chr2:145090006:-	ZEB2	54064	chr2:145187593:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2441	0	GTEx_FI:{Brain=[count:6=pct:0.9],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_REARRANGEMENT:-:[51513],GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2441	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTF2--DR1	10	41	MTF2	7741	chr1:93584958:+	DR1	24972	chr1:93826050:+	ONLY_REF_SPLICE	YES	115	259	0.31	0.16	0.1162	0.4766	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.31	0.5928	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITCH--CATSPERD	2	49	ITCH	3377	chr20:32981687:+	CATSPERD	35374	chr19:5724819:+	ONLY_REF_SPLICE	YES	85	0	0.38	1	0.0232	0.5696	ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,CATSPERD->cation_channel_sperm_associated_auxiliary_subunit_delta,chr19:5720688-5778745:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.5928	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DACH1--OPCML	8	2	DACH1	3393	chr13:72255927:-	OPCML	24761	chr11:132527214:-	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.093	0.0232	DACH1->chr13:72012098-72441330:-,dachshund_family_transcription_factor_1,OPCML->Oncogene{Bushman},chr11:132284871-133402414:-,opioid_binding_protein/cell_adhesion_molecule-like	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.1162	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALGAPB--AP1M2	5	9	RALGAPB	15862	chr20:37161502:+	AP1M2	43578	chr19:10695720:-	ONLY_REF_SPLICE	YES	44	3	0.24	0.82	0.0581	0.1046	RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.82	0.1627	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSPC1--DACH1	6	3	PSPC1	7403	chr13:20304379:-	DACH1	19883	chr13:72256042:-	ONLY_REF_SPLICE	YES	208	0	0.04	1	0.0697	0.0349	PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,DACH1->chr13:72012098-72441330:-,dachshund_family_transcription_factor_1	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.1046	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1B--AC068535.4	5	0	RAP1B	15072	chr12:69053773:+	AC068535.4	19991	chr2:105121504:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,AC068535.4->chr2:105104916-105126967:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0581	TRUE	0	0	0	4	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM165--SRD5A3-AS1	3	1	TMEM165	1440	chr4:56262563:+	SRD5A3-AS1	21895	chr4:56253704:-	ONLY_REF_SPLICE	YES	73	0	0.05	1	0.0349	0.0116	LOCAL_INVERSION:+:-:[110],TMEM165->chr4:56262124-56319564:+,transmembrane_protein_165,SRD5A3-AS1->SRD5A3_antisense_RNA_1,chr4:56230138-56262014:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DACH1--OPCML	2	2	DACH1	3393	chr13:72255927:-	OPCML	23695	chr11:132687086:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0232	0.0232	DACH1->chr13:72012098-72441330:-,dachshund_family_transcription_factor_1,OPCML->Oncogene{Bushman},chr11:132284871-133402414:-,opioid_binding_protein/cell_adhesion_molecule-like	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BANP--SLC7A5	2	0	BANP	3272	chr16:87985121:+	SLC7A5	39052	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	{Klijn_CCL:Skin=1},LOCAL_INVERSION:+:-:[79756],BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--FCGRT	2	0	C17orf76-AS1	1593	chr17:16342728:+	FCGRT	21378	chr19:50027764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	C17orf76-AS1->chr17:16342136-16381992:+,FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	3	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASC4--EIF3J	2	0	CASC4	6085	chr15:44620985:+	EIF3J	25545	chr15:44829522:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF3M--QSER1	2	0	EIF3M	1132	chr11:32605475:+	QSER1	26604	chr11:32975403:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M,QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	METAP2--USP44	2	0	METAP2	1811	chr12:95868106:+	USP44	25225	chr12:95928102:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_INVERSION:+:-:[721],METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2,USP44->chr12:95910336-95945266:-,ubiquitin_specific_peptidase_44	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO3B--UBR3	2	0	MYO3B	10164	chr2:171225887:+	UBR3	82701	chr2:170885856:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:+:[94014],MYO3B->chr2:171034655-171511681:+,myosin_IIIB,UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative)	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R16B--RP5-1043L13.1	2	0	PPP1R16B	2439	chr20:37464818:+	RP5-1043L13.1	30631	chr20:58729463:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	PPP1R16B->Oncogene{Bushman},chr20:37434348-37551667:+,protein_phosphatase_1_regulatory_subunit_16B,RP5-1043L13.1->chr20:58662895-59102516:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D23--CMSS1	2	0	TBC1D23	1072	chr3:99979915:+	CMSS1	37565	chr3:99865817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:+:[82397],TBC1D23->TBC1_domain_family_member_23,chr3:99979844-100044095:+,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000004
SNU1214_UPPER_AERODIGESTIVE_TRACT	LMAN1--RP11-214L13.1	191	196	LMAN1	10187	chr18:57013151:-	RP11-214L13.1	22041	chr18:53565658:-	ONLY_REF_SPLICE	YES	147	0	0.72	1	1.7873	1.8341	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,RP11-214L13.1->chr18:53548919-53587430:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.72	1	3.6214	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	LMAN1--RP11-214L13.1	112	120	LMAN1	9054	chr18:57014745:-	RP11-214L13.1	22041	chr18:53565658:-	ONLY_REF_SPLICE	YES	189	0	0.55	1	1.0481	1.1229	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,RP11-214L13.1->chr18:53548919-53587430:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.55	1	2.171	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	LMAN1--RP11-214L13.1	46	167	LMAN1	10187	chr18:57013151:-	RP11-214L13.1	22060	chr18:53565639:-	INCL_NON_REF_SPLICE	YES	147	0	0.59	1	0.4305	1.5627	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,RP11-214L13.1->chr18:53548919-53587430:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.59	1	1.9932	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CCAT1--CASC8	69	61	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	73	6	0.64	0.96	0.6457	0.5708	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.64	0.96	1.2165	TRUE	0	7	0	7	7	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	LMAN1--RP11-214L13.1	28	101	LMAN1	9054	chr18:57014745:-	RP11-214L13.1	22060	chr18:53565639:-	INCL_NON_REF_SPLICE	YES	189	0	0.41	1	0.262	0.9451	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,RP11-214L13.1->chr18:53548919-53587430:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.41	1	1.2071	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CLSTN1--MMEL1	37	10	CLSTN1	3007	chr1:9833330:-	MMEL1	33014	chr1:2530229:-	ONLY_REF_SPLICE	YES	85	0	0.36	1	0.3462	0.0936	CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,MMEL1->chr1:2522078-2564481:-,membrane_metallo-endopeptidase-like_1	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.36	1	0.4398	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	TGFBR2--GRM7-AS2	34	9	TGFBR2	7853	chr3:30715738:+	GRM7-AS2	15708	chr3:6935706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3182	0.0842	TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,GRM7-AS2->GRM7_antisense_RNA_2,chr3:6934319-6935709:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.4024	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CCAT1--CASC8	6	48	CCAT1	1274	chr8:128231060:-	CASC8	12971	chr8:128433208:-	INCL_NON_REF_SPLICE	YES	66	6	0.45	0.9	0.0561	0.4492	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.45	0.9	0.5053	TRUE	0	7	0	7	7	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CCAT1--CASC8	1	62	CCAT1	1279	chr8:128231055:-	CASC8	11189	chr8:128455965:-	ONLY_REF_SPLICE	YES	73	5	0.46	0.93	0.0094	0.5802	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.46	0.93	0.5896	TRUE	0	0	0	2	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	LMAN1--RP11-214L13.1	10	24	LMAN1	5172	chr18:57020434:-	RP11-214L13.1	22041	chr18:53565658:-	ONLY_REF_SPLICE	YES	250	0	0.12	1	0.0936	0.2246	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,RP11-214L13.1->chr18:53548919-53587430:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.12	1	0.3182	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	IGFBP7--KRT17	13	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1217	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.1217	TRUE	0	0	0	9	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	LMAN1--RP11-214L13.1	5	19	LMAN1	5172	chr18:57020434:-	RP11-214L13.1	22060	chr18:53565639:-	INCL_NON_REF_SPLICE	YES	250	0	0.09	1	0.0468	0.1778	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,RP11-214L13.1->chr18:53548919-53587430:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	PJA2--OTP	8	7	PJA2	8567	chr5:108704262:-	OTP	21317	chr5:76933055:-	ONLY_REF_SPLICE	YES	56	0	0.21	1	0.0749	0.0655	PJA2->chr5:108670410-108745695:-,praja_ring_finger_ubiquitin_ligase_2,OTP->chr5:76924538-76935513:-,orthopedia_homeobox	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.1404	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CLSTN1--MMEL1	8	6	CLSTN1	3007	chr1:9833330:-	MMEL1	33068	chr1:2530175:-	INCL_NON_REF_SPLICE	YES	85	0	0.14	1	0.0749	0.0561	CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,MMEL1->chr1:2522078-2564481:-,membrane_metallo-endopeptidase-like_1	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.131	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CCAT1--CASC8	4	16	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	73	16	0.22	0.56	0.0374	0.1497	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.22	0.56	0.1871	TRUE	0	7	0	14	6	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NCKAP5--AP2A1	7	1	NCKAP5	1248	chr2:134325787:-	AP2A1	37457	chr19:50295192:+	ONLY_REF_SPLICE	YES	1	200	0.89	0.04	0.0655	0.0094	NCKAP5->NCK_associated_protein_5,chr2:133429374-134326034:-,AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.04	0.89	0.0749	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CCAT1--CASC8	3	10	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	73	26	0.15	0.33	0.0281	0.0936	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.15	0.33	0.1217	TRUE	0	26	0	18	24	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	PTPN9--SNUPN	4	4	PTPN9	4898	chr15:75815462:-	SNUPN	22312	chr15:75918712:-	INCL_NON_REF_SPLICE	YES	89	0	0.08	1	0.0374	0.0374	LOCAL_REARRANGEMENT:-:[18794],PTPN9->chr15:75759462-75871630:-,protein_tyrosine_phosphatase,_non-receptor_type_9,SNUPN->chr15:75890424-75918810:-,snurportin_1	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.08	1	0.0748	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RFC4--SOX2-OT	5	0	RFC4	3476	chr3:186522372:-	SOX2-OT	23403	chr3:181281508:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0	RFC4->chr3:186507669-186524847:-,replication_factor_C_subunit_4,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-255B23.4--CASC8	5	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	12367	chr8:128433208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0468	TRUE	0	2	0	2	2	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	EXT1--SAMD12	3	0	EXT1	2769	chr8:119122324:-	SAMD12	31808	chr8:119209971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0281	TRUE	0	6	0	5	5	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	HMGB1--NPM1P40	3	0	HMGB1	8082	chr13:31035497:-	NPM1P40	14159	chr1:203225334:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1,NPM1P40->chr1:203224871-203225603:+,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_40	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	IGFBP7--KRT17	3	0	IGFBP7	1147	chr4:57976405:-	KRT17	10592	chr17:39780778:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0281	TRUE	0	0	0	9	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	SOX2-OT--APBA1	3	0	SOX2-OT	13119	chr3:181328717:+	APBA1	39763	chr9:72132195:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+,APBA1->amyloid_beta_precursor_protein_binding_family_A_member_1,chr9:72042446-72287222:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	C7orf50--SUN1	2	0	C7orf50	6340	chr7:1067894:-	SUN1	41103	chr7:908986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	DHRS9--PHF14	2	0	DHRS9	4426	chr2:169926227:+	PHF14	41363	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	DHRS9->chr2:169921299-169952677:+,dehydrogenase/reductase_(SDR_family)_member_9,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	DYNC1H1--LINC00969	2	0	DYNC1H1	34093	chr14:102489217:+	LINC00969	76523	chr3:195415404:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	DYNC1H1->chr14:102430865-102517129:+,dynein_cytoplasmic_1_heavy_chain_1,LINC00969->chr3:195384933-195460422:+,long_intergenic_non-protein_coding_RNA_969	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NF1--RNF135	2	0	NF1	1443	chr17:29422387:+	RNF135	81276	chr17:29311635:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},LOCAL_REARRANGEMENT:+:[95016],NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	ODC1--FLRT2	2	0	ODC1	1384	chr2:10588247:-	FLRT2	19447	chr14:86087483:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	ODC1->chr2:10580094-10588630:-,ornithine_decarboxylase_1,FLRT2->chr14:85996488-86095034:+,fibronectin_leucine_rich_transmembrane_protein_2	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	PCDHGA9--TUBGCP3	2	0	PCDHGA9	3424	chr5:140784943:+	TUBGCP3	25647	chr13:113181798:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	PCDHGA9->chr5:140782520-140892546:+,protocadherin_gamma_subfamily_A,_9,TUBGCP3->chr13:113139325-113242481:-,tubulin_gamma_complex_associated_protein_3	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-308D16.4--MYO6	2	0	RP11-308D16.4	1386	chrX:135991939:+	MYO6	47755	chr6:76618213:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	RP11-308D16.4->chrX:135991554-136103789:+,MYO6->chr6:76458909-76629254:+,myosin_VI	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	TOLLIP--MIR205HG	2	0	TOLLIP	11922	chr11:1307232:-	MIR205HG	20482	chr1:209602526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	TOLLIP->chr11:1295601-1330884:-,toll_interacting_protein,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	USP33--LANCL2	2	0	USP33	1210	chr1:78225328:-	LANCL2	41332	chr7:55479600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33,LANCL2->LanC_like_2,chr7:55433141-55501435:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	XKR9--LACTB2	2	0	XKR9	1174	chr8:71581773:+	LACTB2	20001	chr8:71556478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	LOCAL_INVERSION:+:-:[191],XKR9->XK_related_9,chr8:71581600-71702606:+,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	11	0	8	7	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-255B23.4--CASC8	1	2	RP11-255B23.4	2391	chr8:128200030:-	CASC8	12367	chr8:128433208:-	ONLY_REF_SPLICE	YES	10	6	0.23	0.33	0.0094	0.0187	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.23	0.33	0.0281	TRUE	0	1	0	2	1	TRUE	ACH-000715
HT55_LARGE_INTESTINE	MAP7--MAP3K5	94	3	MAP7	1478	chr6:136871480:-	MAP3K5	26977	chr6:137041727:-	ONLY_REF_SPLICE	YES	30	47	0.76	0.67	1.1798	0.0377	LOCAL_REARRANGEMENT:-:[6228],MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7,MAP3K5->chr6:136878185-137113656:-,mitogen-activated_protein_kinase_kinase_kinase_5	HT55_LARGE_INTESTINE	0.67	0.76	1.2175	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	RABEP1--ALG14	7	4	RABEP1	15346	chr17:5266311:+	ALG14	31536	chr1:95530573:-	ONLY_REF_SPLICE	YES	41	286	0.21	0.04	0.0879	0.0502	{Klijn_CCL:Colo-Rectal=1},RABEP1->Oncogene{Bushman},chr17:5185558-5289129:+,rabaptin,_RAB_GTPase_binding_effector_protein_1,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	HT55_LARGE_INTESTINE	0.04	0.21	0.1381	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	DOCK11--WDR44	4	1	DOCK11	17085	chrX:117724265:+	WDR44	56332	chrX:117521303:+	ONLY_REF_SPLICE	YES	19	21	0.21	0.19	0.0502	0.0126	LOCAL_REARRANGEMENT:+:[45937],DOCK11->chrX:117629861-117820126:+,dedicator_of_cytokinesis_11,WDR44->WD_repeat_domain_44,chrX:117480036-117583924:+	HT55_LARGE_INTESTINE	0.19	0.21	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	CTC-432M15.3--UBE2D2	2	2	CTC-432M15.3	13051	chr5:130840319:-	UBE2D2	41403	chr5:138979957:+	ONLY_REF_SPLICE	YES	10	93	0.29	0.04	0.0251	0.0251	CTC-432M15.3->chr5:130761584-131132676:-,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	HT55_LARGE_INTESTINE	0.04	0.29	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	C17orf53--LAPTM5	2	1	C17orf53	8825	chr17:42232779:+	LAPTM5	17015	chr1:31215396:-	ONLY_REF_SPLICE	YES	11	2	0.21	0.6	0.0251	0.0126	C17orf53->chr17:42219274-42239844:+,chromosome_17_open_reading_frame_53,LAPTM5->Oncogene{Bushman},chr1:31205316-31230667:-,lysosomal_protein_transmembrane_5	HT55_LARGE_INTESTINE	0.21	0.6	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	C17orf76-AS1--C10orf76	2	0	C17orf76-AS1	1593	chr17:16342728:+	C10orf76	28662	chr10:103753360:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	C17orf76-AS1->chr17:16342136-16381992:+,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	HT55_LARGE_INTESTINE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	LDLR--EML2	2	0	LDLR	1254	chr19:11200291:+	EML2	30319	chr19:46145610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,EML2->chr19:46110252-46148887:-,echinoderm_microtubule_associated_protein_like_2	HT55_LARGE_INTESTINE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	POU2F1--MAEL	2	0	POU2F1	1130	chr1:167190195:+	MAEL	54320	chr1:166990322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,MAEL->chr1:166958346-166991451:+,maelstrom_spermatogenic_transposon_silencer	HT55_LARGE_INTESTINE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	RABEP1--ALG14	2	0	RABEP1	15346	chr17:5266311:+	ALG14	34870	chr1:95492816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	{Klijn_CCL:Colo-Rectal=1},RABEP1->Oncogene{Bushman},chr17:5185558-5289129:+,rabaptin,_RAB_GTPase_binding_effector_protein_1,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	HT55_LARGE_INTESTINE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	RP11-440L14.1--CTBP1	2	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HT55_LARGE_INTESTINE	1	1	0.0251	TRUE	0	2	0	7	2	TRUE	ACH-000926
HT55_LARGE_INTESTINE	RP11-661P17.1--SLCO3A1	2	0	RP11-661P17.1	3525	chr15:92016546:+	SLCO3A1	15689	chr15:92459223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	GTEx_FI:{Pancreas=[count:3=pct:1.7]},RP11-661P17.1->chr15:91951938-92148441:+,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	HT55_LARGE_INTESTINE	1	1	0.0251	TRUE	1	11	1	4	10	TRUE	ACH-000926
SCC4_UPPER_AERODIGESTIVE_TRACT	EHBP1--MDH1	208	76	EHBP1	15845	chr2:63101667:+	MDH1	42351	chr2:63821622:+	ONLY_REF_SPLICE	YES	39	17	0.88	0.94	2.3714	0.8665	EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,MDH1->chr2:63815743-63834331:+,malate_dehydrogenase_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.88	0.94	3.2379	TRUE	0	1	0	1	1	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ANP32B--NCL	58	0	ANP32B	9252	chr9:100774754:+	NCL	18675	chr2:232326421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6613	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.6613	TRUE	0	0	0	7	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	PDS5B--TDRD3	42	2	PDS5B	1167	chr13:33160730:+	TDRD3	51170	chr13:61013822:+	ONLY_REF_SPLICE	YES	2	0	0.96	1	0.4788	0.0228	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	SCC4_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.5016	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MAP4--CDC25A	40	3	MAP4	1507	chr3:48130263:-	CDC25A	46363	chr3:48219478:-	ONLY_REF_SPLICE	YES	14	18	0.75	0.7	0.456	0.0342	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[67867],MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,CDC25A->Oncogene{Bushman},cell_division_cycle_25A,chr3:48198636-48229892:-	SCC4_UPPER_AERODIGESTIVE_TRACT	0.7	0.75	0.4902	TRUE	0	1	0	1	1	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ANP32B--NCL	33	0	ANP32B	8161	chr9:100773632:+	NCL	19608	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3762	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.3762	TRUE	0	0	0	7	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	TMEM99--SCPEP1	25	20	TMEM99	4536	chr17:38990771:+	SCPEP1	21578	chr17:55079379:+	INCL_NON_REF_SPLICE	YES	71	172	0.39	0.21	0.285	0.228	TMEM99->chr17:38975358-38992522:+,transmembrane_protein_99,SCPEP1->chr17:55055466-55084129:+,serine_carboxypeptidase_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.21	0.39	0.513	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	STK3--OSR2	25	17	STK3	24069	chr8:99608260:-	OSR2	42287	chr8:99961067:+	ONLY_REF_SPLICE	YES	123	83	0.25	0.34	0.285	0.1938	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},LOCAL_INVERSION:-:+:[1576],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,OSR2->chr8:99956631-99964332:+,odd-skipped_related_transciption_factor_2	SCC4_UPPER_AERODIGESTIVE_TRACT	0.25	0.34	0.4788	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ATXN3--LRMP	28	0	ATXN3	1093	chr14:92572873:-	LRMP	32518	chr12:25205169:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3192	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.3192	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-479O16.1--MSMO1	28	0	RP11-479O16.1	5346	chr5:58037747:-	MSMO1	15454	chr4:166263475:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3192	0	RP11-479O16.1->chr5:58037408-58112926:-,MSMO1->chr4:166248775-166264312:+,methylsterol_monooxygenase_1	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.3192	TRUE	0	0	0	5	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	AKAP1--SLC13A2	25	0	AKAP1	1307	chr17:55162759:+	SLC13A2	25627	chr17:26816232:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.285	0	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.285	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	GALNT13--SEC61B	14	7	GALNT13	4761	chr2:154801152:+	SEC61B	27059	chr9:101984383:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1596	0.0798	GALNT13->chr2:154728426-155310361:+,polypeptide_N-acetylgalactosaminyltransferase_13,SEC61B->Sec61_translocon_beta_subunit,chr9:101984346-101992897:+	SCC4_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.2394	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	CRK--SMG6	12	13	CRK	2592	chr17:1359171:-	SMG6	12849	chr17:2203958:-	ONLY_REF_SPLICE	YES	46	5	0.35	0.83	0.1368	0.1482	CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog,SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-	SCC4_UPPER_AERODIGESTIVE_TRACT	0.35	0.83	0.285	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ANP32B--NCL	10	0	ANP32B	8188	chr9:100773659:+	NCL	18698	chr2:232326398:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.114	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.114	TRUE	0	0	0	7	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	TPST2--ANKRD22	10	0	TPST2	2202	chr22:26986017:-	ANKRD22	19759	chr10:90591783:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.114	0	TPST2->chr22:26921458-26992681:-,tyrosylprotein_sulfotransferase_2,ANKRD22->ankyrin_repeat_domain_22,chr10:90581889-90611575:-	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.114	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	EHBP1--MDH1	7	2	EHBP1	15845	chr2:63101667:+	MDH1	46154	chr2:63826304:+	ONLY_REF_SPLICE	YES	39	193	0.19	0.04	0.0798	0.0228	EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,MDH1->chr2:63815743-63834331:+,malate_dehydrogenase_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.04	0.19	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	EHBP1--MDH1	2	18	EHBP1	15845	chr2:63101667:+	MDH1	44383	chr2:63824533:+	ONLY_REF_SPLICE	YES	39	192	0.34	0.09	0.0228	0.2052	EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,MDH1->chr2:63815743-63834331:+,malate_dehydrogenase_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.09	0.34	0.228	TRUE	0	1	0	1	1	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	PDS5B--TDRD3	6	1	PDS5B	1167	chr13:33160730:+	TDRD3	53321	chr13:61034514:+	ONLY_REF_SPLICE	YES	2	19	0.78	0.27	0.0684	0.0114	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	SCC4_UPPER_AERODIGESTIVE_TRACT	0.27	0.78	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	PDS5B--TDRD3	6	1	PDS5B	1167	chr13:33160730:+	TDRD3	52255	chr13:61018817:+	ONLY_REF_SPLICE	YES	2	7	0.78	0.5	0.0684	0.0114	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	SCC4_UPPER_AERODIGESTIVE_TRACT	0.5	0.78	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ANP32B--NCL	6	0	ANP32B	8161	chr9:100773632:+	NCL	18704	chr2:232326392:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0684	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0684	TRUE	0	0	0	7	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ATXN3--LRMP	6	0	ATXN3	1093	chr14:92572873:-	LRMP	35302	chr12:25215754:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ATXN3--LRMP	6	0	ATXN3	1093	chr14:92572873:-	LRMP	34240	chr12:25214526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	AKAP1--SLC13A2	4	0	AKAP1	2446	chr17:55163898:+	SLC13A2	25627	chr17:26816232:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0456	0	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ANP32B--NCL	4	0	ANP32B	8188	chr9:100773659:+	NCL	18716	chr2:232326380:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0456	TRUE	0	0	0	7	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ZNF75D--RORA	4	0	ZNF75D	1827	chrX:134477186:-	RORA	24600	chr15:60970885:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0456	0	ZNF75D->chrX:134382867-134478012:-,zinc_finger_protein_75D,RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	EHBP1--MDH1	3	0	EHBP1	15845	chr2:63101667:+	MDH1	48037	chr2:63831830:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,MDH1->chr2:63815743-63834331:+,malate_dehydrogenase_1	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	PDS5B--TDRD3	2	1	PDS5B	1167	chr13:33160730:+	TDRD3	56084	chr13:61057909:+	ONLY_REF_SPLICE	YES	2	24	0.6	0.11	0.0228	0.0114	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	SCC4_UPPER_AERODIGESTIVE_TRACT	0.11	0.6	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	AKAP1--SLC13A2	2	0	AKAP1	1307	chr17:55162759:+	SLC13A2	26720	chr17:26817325:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	AKAP1--SLC13A2	2	0	AKAP1	1307	chr17:55162759:+	SLC13A2	24486	chr17:26814428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ARHGEF16--LRRC47	2	0	ARHGEF16	15684	chr1:3396477:+	LRRC47	21528	chr1:3703874:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ARHGEF16->Rho_guanine_nucleotide_exchange_factor_16,chr1:3370990-3397677:+,LRRC47->chr1:3696784-3713068:-,leucine_rich_repeat_containing_47	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ATXN3--LRMP	2	0	ATXN3	1093	chr14:92572873:-	LRMP	40592	chr12:25232178:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	DUSP2--PTMA	2	0	DUSP2	1680	chr2:96810500:-	PTMA	10700	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	DUSP2->Oncogene{Bushman},chr2:96808905-96811179:-,dual_specificity_phosphatase_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	AKAP1--SLC13A2	1	1	AKAP1	2446	chr17:55163898:+	SLC13A2	24486	chr17:26814428:+	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0114	0.0114	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	SCC4_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-761E20.1--PLS3	1	1	RP11-761E20.1	1129	chrX:115085294:-	PLS3	10293	chrX:114844555:+	ONLY_REF_SPLICE	YES	0	9	1	0.18	0.0114	0.0114	RP11-761E20.1->chrX:115033604-115085422:-,PLS3->chrX:114795501-114885181:+,plastin_3	SCC4_UPPER_AERODIGESTIVE_TRACT	0.18	1	0.0228	TRUE	0	0	0	2	0	TRUE	ACH-000238
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SREBF2--MEI1	50	14	SREBF2	1254	chr22:42229362:+	MEI1	57157	chr22:42177689:+	ONLY_REF_SPLICE	YES	167	5	0.28	0.93	0.6275	0.1757	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.93	0.8032	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRGAP2B--IGKV1OR10-1	17	3	SRGAP2B	4458	chr1:144014093:+	IGKV1OR10-1	9840	chr10:42680942:+	ONLY_REF_SPLICE	YES	93	0	0.18	1	0.2133	0.0376	SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+,IGKV1OR10-1->chr10:42680787-42681239:+,immunoglobulin_kappa_variable_1/OR10-1_(pseudogene)	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.2509	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCG4P5--EEF2	6	0	HCG4P5	1523	chr6:29910322:-	EEF2	5033	chr19:3985428:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0753	TRUE	0	0	0	3	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDRG1--RPS18	6	0	NDRG1	17796	chr8:134262694:-	RPS18	31712	chr6:33239868:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0	NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0753	TRUE	0	0	0	2	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SREBF2--MEI1	5	3	SREBF2	1254	chr22:42229362:+	MEI1	58318	chr22:42180343:+	ONLY_REF_SPLICE	YES	167	12	0.05	0.4	0.0627	0.0376	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.4	0.1003	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALDOA--RPS28	3	0	ALDOA	7437	chr16:30077209:+	RPS28	15371	chr19:8386406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0376	TRUE	0	0	0	2	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAPDH--CHCHD3	3	0	GAPDH	4061	chr12:6646177:+	CHCHD3	11906	chr7:132720667:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS9--RPL3	3	0	RPS9	3304	chr19:54710180:+	RPL3	15341	chr22:39712801:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	RPS9->chr19:54704610-54752862:+,ribosomal_protein_S9,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0376	TRUE	0	0	0	2	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC074389.9--MAD1L1	2	0	AC074389.9	1083	chr7:1781845:-	MAD1L1	38596	chr7:1976533:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:-:[73502],AC074389.9->chr7:1778266-1781927:-,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--HN1	2	0	C17orf76-AS1	1593	chr17:16342728:+	HN1	17544	chr17:73144766:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	C17orf76-AS1->chr17:16342136-16381992:+,HN1->chr17:73131343-73164376:-,hematological_and_neurological_expressed_1	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C20orf197--CDH26	2	0	C20orf197	1084	chr20:58631063:+	CDH26	24474	chr20:58574641:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:+:[21914],C20orf197->chr20:58630980-58648008:+,chromosome_20_open_reading_frame_197,CDH26->cadherin_26,chr20:58533471-58609066:+	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMGA2--LUM	2	0	HMGA2	5315	chr12:66232349:+	LUM	30462	chr12:91498096:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	8	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	2	0	RCC1	2920	chr1:28835417:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	1	10	0	18	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TJAP1--C6orf136	2	0	TJAP1	9770	chr6:43471444:+	C6orf136	18831	chr6:30618771:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	TJAP1->chr6:43445261-43474294:+,tight_junction_associated_protein_1,C6orf136->chr6:30614816-30620987:+,chromosome_6_open_reading_frame_136	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000336
HS706T_BONE	ASCL1--GLS	49	0	ASCL1	1745	chr12:103352208:+	GLS	6903	chr2:191745624:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5184	0	ASCL1->Oncogene{Bushman},achaete-scute_family_bHLH_transcription_factor_1,chr12:103351464-103354294:+,GLS->chr2:191745553-191830278:+,glutaminase	HS706T_BONE	1	1	0.5184	TRUE	0	0	0	1	0	TRUE	ACH-000071
HS706T_BONE	CALM3--MYL6	29	0	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3068	0	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	HS706T_BONE	1	1	0.3068	TRUE	0	0	0	8	0	TRUE	ACH-000071
HS706T_BONE	ASCL1--GLS	16	0	ASCL1	1745	chr12:103352208:+	GLS	6906	chr2:191745627:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1693	0	ASCL1->Oncogene{Bushman},achaete-scute_family_bHLH_transcription_factor_1,chr12:103351464-103354294:+,GLS->chr2:191745553-191830278:+,glutaminase	HS706T_BONE	1	1	0.1693	TRUE	0	0	0	1	0	TRUE	ACH-000071
HS706T_BONE	RP1-249H1.4--RP11-367G18.1	9	4	RP1-249H1.4	2789	chr6:114191469:-	RP11-367G18.1	10356	chr6:113948877:-	INCL_NON_REF_SPLICE	YES	17	1	0.43	0.93	0.0952	0.0423	RP1-249H1.4->chr6:114189178-114194516:-,RP11-367G18.1->chr6:113944737-113971276:-	HS706T_BONE	0.43	0.93	0.1375	TRUE	0	0	0	3	0	TRUE	ACH-000071
HS706T_BONE	ASCL1--GLS	7	0	ASCL1	1745	chr12:103352208:+	GLS	6909	chr2:191745630:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0741	0	ASCL1->Oncogene{Bushman},achaete-scute_family_bHLH_transcription_factor_1,chr12:103351464-103354294:+,GLS->chr2:191745553-191830278:+,glutaminase	HS706T_BONE	1	1	0.0741	TRUE	0	0	0	1	0	TRUE	ACH-000071
HS706T_BONE	CLDN12--TNS3	2	0	CLDN12	4834	chr7:90034922:+	TNS3	42584	chr7:47454804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	CLDN12->chr7:90013035-90142716:+,claudin_12,TNS3->chr7:47314752-47622156:-,tensin_3	HS706T_BONE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000071
HCC1187_BREAST	CTNND1--SMTNL1	281	135	CTNND1	2585	chr11:57529518:+	SMTNL1	35466	chr11:57317441:+	ONLY_REF_SPLICE	YES	294	0	0.59	1	2.9591	1.4216	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SMTNL1->chr11:57308979-57318108:+,smoothelin-like_1	HCC1187_BREAST	0.59	1	4.3807	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CTAGE5--GEMIN2	245	77	CTAGE5	23531	chr14:39796226:+	GEMIN2	43661	chr14:39605644:+	ONLY_REF_SPLICE	YES	30	28	0.91	0.92	2.58	0.8109	CTAGE5->CTAGE_family_member_5,chr14:39734488-39856156:+,GEMIN2->chr14:39583427-39606177:+,gem_nuclear_organelle_associated_protein_2	HCC1187_BREAST	0.91	0.92	3.3909	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	PUM1--TRERF1	176	69	PUM1	26417	chr1:31413998:-	TRERF1	37568	chr6:42237586:-	ONLY_REF_SPLICE	YES	108	0	0.69	1	1.8534	0.7266	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	HCC1187_BREAST	0.69	1	2.58	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	AGPAT5--MCPH1	107	56	AGPAT5	7728	chr8:6599272:+	MCPH1	36611	chr8:6500515:+	ONLY_REF_SPLICE	YES	70	15	0.7	0.92	1.1268	0.5897	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[64734],AGPAT5->1-acylglycerol-3-phosphate_O-acyltransferase_5,chr8:6565878-6617184:+,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	HCC1187_BREAST	0.7	0.92	1.7165	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	KMT2E--LHFPL3	103	38	KMT2E	16085	chr7:104722244:+	LHFPL3	39671	chr7:104546634:+	ONLY_REF_SPLICE	YES	63	0	0.69	1	1.0847	0.4002	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LHFPL3->chr7:103969104-104549001:+,lipoma_HMGIC_fusion_partner-like_3	HCC1187_BREAST	0.69	1	1.4849	TRUE	0	2	0	1	2	TRUE	ACH-000111
HCC1187_BREAST	PPFIBP1--SMCO2	84	29	PPFIBP1	1935	chr12:27677298:+	SMCO2	50047	chr12:27648613:+	ONLY_REF_SPLICE	YES	37	1	0.75	0.99	0.8846	0.3054	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	HCC1187_BREAST	0.75	0.99	1.19	TRUE	0	3	0	3	2	TRUE	ACH-000111
HCC1187_BREAST	ALDOA--SHISA9	85	16	ALDOA	7476	chr16:30077248:+	SHISA9	21562	chr16:13010545:+	ONLY_REF_SPLICE	YES	997	2	0.09	0.98	0.8951	0.1685	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,SHISA9->chr16:12995477-13334272:+,shisa_family_member_9	HCC1187_BREAST	0.09	0.98	1.0636	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	POFUT1--TM9SF4	75	27	POFUT1	6999	chr20:30816258:+	TM9SF4	22684	chr20:30730785:+	ONLY_REF_SPLICE	YES	57	182	0.64	0.36	0.7898	0.2843	{Klijn_CCL:Lung=1,Breast=1},LOCAL_REARRANGEMENT:+:[40622],POFUT1->chr20:30795683-30826470:+,protein_O-fucosyltransferase_1,TM9SF4->chr20:30697309-30755061:+,transmembrane_9_superfamily_member_4	HCC1187_BREAST	0.36	0.64	1.0741	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	SEC22B--NOTCH2	66	42	SEC22B	1402	chr1:145096621:+	NOTCH2	47735	chr1:120465401:-	ONLY_REF_SPLICE	YES	146	75	0.43	0.59	0.695	0.4423	SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+,NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2	HCC1187_BREAST	0.43	0.59	1.1373	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CTCF--SCUBE2	67	19	CTCF	2435	chr16:67605167:+	SCUBE2	18891	chr11:9144441:-	ONLY_REF_SPLICE	YES	47	0	0.65	1	0.7055	0.2001	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,SCUBE2->chr11:9041071-9159661:-,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_2	HCC1187_BREAST	0.65	1	0.9056	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CTNND1--SMTNL1	14	137	CTNND1	2658	chr11:57529591:+	SMTNL1	35466	chr11:57317441:+	ONLY_REF_SPLICE	YES	380	0	0.28	1	0.1474	1.4427	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SMTNL1->chr11:57308979-57318108:+,smoothelin-like_1	HCC1187_BREAST	0.28	1	1.5901	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	KLK5--CDH23	45	8	KLK5	3986	chr19:51451896:-	CDH23	54327	chr10:73501451:+	ONLY_REF_SPLICE	YES	456	0	0.1	1	0.4739	0.0842	{Klijn_CCL:Breast=1},KLK5->Oncogene{Bushman},chr19:51446559-51456349:-,kallikrein_related_peptidase_5,CDH23->cadherin-related_23,chr10:73156691-73575702:+	HCC1187_BREAST	0.1	1	0.5581	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	PLXND1--TMCC1	39	28	PLXND1	11171	chr3:129293179:-	TMCC1	45922	chr3:129390107:-	ONLY_REF_SPLICE	YES	58	35	0.54	0.66	0.4107	0.2949	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	HCC1187_BREAST	0.54	0.66	0.7056	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	PPFIBP1--SMCO2	27	36	PPFIBP1	1935	chr12:27677298:+	SMCO2	48990	chr12:27647233:+	ONLY_REF_SPLICE	YES	37	1	0.63	0.98	0.2843	0.3791	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	HCC1187_BREAST	0.63	0.98	0.6634	TRUE	0	1	0	3	1	TRUE	ACH-000111
HCC1187_BREAST	CTNND1--SMTNL1	1	137	CTNND1	2607	chr11:57529540:+	SMTNL1	35466	chr11:57317441:+	ONLY_REF_SPLICE	YES	373	0	0.27	1	0.0105	1.4427	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SMTNL1->chr11:57308979-57318108:+,smoothelin-like_1	HCC1187_BREAST	0.27	1	1.4532	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	PLXND1--TMCC1	31	13	PLXND1	8651	chr3:129297172:-	TMCC1	45922	chr3:129390107:-	ONLY_REF_SPLICE	YES	85	35	0.34	0.56	0.3264	0.1369	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	HCC1187_BREAST	0.34	0.56	0.4633	TRUE	0	1	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	AKAP13--PDE8A	26	20	AKAP13	4798	chr15:86028984:+	PDE8A	69389	chr15:85607601:+	ONLY_REF_SPLICE	YES	14	11	0.77	0.81	0.2738	0.2106	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	HCC1187_BREAST	0.77	0.81	0.4844	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	PLXND1--TMCC1	20	37	PLXND1	11913	chr3:129292437:-	TMCC1	45922	chr3:129390107:-	ONLY_REF_SPLICE	YES	57	35	0.5	0.62	0.2106	0.3896	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	HCC1187_BREAST	0.5	0.62	0.6002	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	ALDOA--SHISA9	18	22	ALDOA	7476	chr16:30077248:+	SHISA9	17390	chr16:13002336:+	ONLY_REF_SPLICE	YES	997	3	0.04	0.93	0.1896	0.2317	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,SHISA9->chr16:12995477-13334272:+,shisa_family_member_9	HCC1187_BREAST	0.04	0.93	0.4213	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	AGPAT5--MCPH1	7	57	AGPAT5	7728	chr8:6599272:+	MCPH1	36297	chr8:6500201:+	ONLY_REF_SPLICE	YES	70	15	0.48	0.81	0.0737	0.6002	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[64734],AGPAT5->1-acylglycerol-3-phosphate_O-acyltransferase_5,chr8:6565878-6617184:+,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	HCC1187_BREAST	0.48	0.81	0.6739	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	PLXND1--TMCC1	15	17	PLXND1	9741	chr3:129294609:-	TMCC1	45922	chr3:129390107:-	ONLY_REF_SPLICE	YES	71	35	0.31	0.48	0.158	0.179	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	HCC1187_BREAST	0.31	0.48	0.337	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CTD-2012K14.6--AMPD3	13	3	CTD-2012K14.6	1664	chr16:67597198:-	AMPD3	18428	chr11:10483062:+	ONLY_REF_SPLICE	YES	0	2	1	0.89	0.1369	0.0316	CTD-2012K14.6->chr16:67583117-67597861:-,AMPD3->adenosine_monophosphate_deaminase_3,chr11:10329860-10529126:+	HCC1187_BREAST	0.89	1	0.1685	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	PLXND1--TMCC1	8	19	PLXND1	10038	chr3:129294312:-	TMCC1	45922	chr3:129390107:-	ONLY_REF_SPLICE	YES	71	35	0.28	0.44	0.0842	0.2001	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	HCC1187_BREAST	0.28	0.44	0.2843	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	SEC22B--NOTCH2	2	43	SEC22B	2457	chr1:145100260:+	NOTCH2	47735	chr1:120465401:-	ONLY_REF_SPLICE	YES	194	75	0.19	0.38	0.0211	0.4528	SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+,NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2	HCC1187_BREAST	0.19	0.38	0.4739	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	PPFIBP1--SMCO2	2	36	PPFIBP1	1935	chr12:27677298:+	SMCO2	47438	chr12:27641393:+	ONLY_REF_SPLICE	YES	37	1	0.51	0.97	0.0211	0.3791	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	HCC1187_BREAST	0.51	0.97	0.4002	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	AC012309.5--EXOSC10	7	7	AC012309.5	2355	chr19:37746884:+	EXOSC10	28666	chr1:11131030:-	ONLY_REF_SPLICE	YES	0	123	1	0.1	0.0737	0.0737	AC012309.5->chr19:37742814-37756437:+,EXOSC10->chr1:11126675-11159938:-,exosome_component_10	HCC1187_BREAST	0.1	1	0.1474	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CTCF--SCUBE2	3	21	CTCF	2435	chr16:67605167:+	SCUBE2	18887	chr11:9144445:-	INCL_NON_REF_SPLICE	YES	47	0	0.34	1	0.0316	0.2211	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,SCUBE2->chr11:9041071-9159661:-,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_2	HCC1187_BREAST	0.34	1	0.2527	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	SUSD1--PTBP3	8	1	SUSD1	8228	chr9:114886537:-	PTBP3	29077	chr9:115060196:-	ONLY_REF_SPLICE	YES	8	246	0.53	0.04	0.0842	0.0105	LOCAL_REARRANGEMENT:-:[43027],SUSD1->chr9:114803065-114937688:-,sushi_domain_containing_1,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	HCC1187_BREAST	0.04	0.53	0.0947	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	TMX2--SMTNL1	7	4	TMX2	2269	chr11:57505140:+	SMTNL1	13679	chr11:57317441:+	ONLY_REF_SPLICE	YES	281	0	0.04	1	0.0737	0.0421	{Klijn_CCL:Stomach=1},TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,SMTNL1->chr11:57308979-57318108:+,smoothelin-like_1	HCC1187_BREAST	0.04	1	0.1158	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	AGPAT5--MCPH1	2	23	AGPAT5	5462	chr8:6590171:+	MCPH1	36297	chr8:6500201:+	ONLY_REF_SPLICE	YES	52	15	0.32	0.62	0.0211	0.2422	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[64734],AGPAT5->1-acylglycerol-3-phosphate_O-acyltransferase_5,chr8:6565878-6617184:+,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	HCC1187_BREAST	0.32	0.62	0.2633	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	AGPAT5--MCPH1	2	22	AGPAT5	5462	chr8:6590171:+	MCPH1	36611	chr8:6500515:+	ONLY_REF_SPLICE	YES	52	15	0.32	0.62	0.0211	0.2317	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[64734],AGPAT5->1-acylglycerol-3-phosphate_O-acyltransferase_5,chr8:6565878-6617184:+,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	HCC1187_BREAST	0.32	0.62	0.2528	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	SEC22B--NOTCH2	2	17	SEC22B	1402	chr1:145096621:+	NOTCH2	48067	chr1:120465069:-	ONLY_REF_SPLICE	YES	146	152	0.12	0.11	0.0211	0.179	SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+,NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2	HCC1187_BREAST	0.11	0.12	0.2001	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CALD1--BPGM	6	0	CALD1	3555	chr7:134464500:+	BPGM	39851	chr7:134346199:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_REARRANGEMENT:+:[64438],CALD1->caldesmon_1,chr7:134429003-134655479:+,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	HCC1187_BREAST	1	1	0.0632	TRUE	0	0	0	2	0	TRUE	ACH-000111
HCC1187_BREAST	ACTG1--NPLOC4	4	0	ACTG1	5248	chr17:79477953:-	NPLOC4	26756	chr17:79539114:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:-:[33040],ACTG1->actin_gamma_1,chr17:79476997-79490873:-,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	HCC1187_BREAST	1	1	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	AC012309.5--EXOSC10	2	7	AC012309.5	3187	chr19:37747716:+	EXOSC10	28666	chr1:11131030:-	ONLY_REF_SPLICE	YES	1	123	0.9	0.07	0.0211	0.0737	AC012309.5->chr19:37742814-37756437:+,EXOSC10->chr1:11126675-11159938:-,exosome_component_10	HCC1187_BREAST	0.07	0.9	0.0948	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CTCF--SCUBE2	3	2	CTCF	2435	chr16:67605167:+	SCUBE2	21222	chr11:9111376:-	ONLY_REF_SPLICE	YES	47	1	0.1	0.83	0.0316	0.0211	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,SCUBE2->chr11:9041071-9159661:-,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_2	HCC1187_BREAST	0.1	0.83	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	AKAP13--SLC28A1	3	0	AKAP13	4798	chr15:86028984:+	SLC28A1	85957	chr15:85504757:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,SLC28A1->chr15:85427885-85518876:+,solute_carrier_family_28_member_1	HCC1187_BREAST	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CEBPB--RPS28	3	0	CEBPB	1228	chr20:48807603:+	RPS28	6180	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	CEBPB->CCAAT/enhancer_binding_protein_beta,Oncogene{Bushman},chr20:48807376-48809212:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC1187_BREAST	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	IL17RD--HESX1	1	5	IL17RD	3290	chr3:57199189:-	HESX1	28745	chr3:57234056:-	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0105	0.0527	LOCAL_REARRANGEMENT:-:[27610],IL17RD->chr3:57124010-57204334:-,interleukin_17_receptor_D,HESX1->HESX_homeobox_1,chr3:57231944-57260549:-	HCC1187_BREAST	0.75	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	AKAP13--SLC28A1	2	0	AKAP13	4798	chr15:86028984:+	SLC28A1	82642	chr15:85486676:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,SLC28A1->chr15:85427885-85518876:+,solute_carrier_family_28_member_1	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	ALDOA--SHISA9	2	0	ALDOA	6054	chr16:30075826:+	SHISA9	21562	chr16:13010545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,SHISA9->chr16:12995477-13334272:+,shisa_family_member_9	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CALD1--AKR1B15	2	0	CALD1	3555	chr7:134464500:+	AKR1B15	38290	chr7:134249350:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CALD1->caldesmon_1,chr7:134429003-134655479:+,AKR1B15->aldo-keto_reductase_family_1,_member_B15,chr7:134233888-134264627:+	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CTAGE5--GEMIN2	2	0	CTAGE5	14871	chr14:39773585:+	GEMIN2	43661	chr14:39605644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CTAGE5->CTAGE_family_member_5,chr14:39734488-39856156:+,GEMIN2->chr14:39583427-39606177:+,gem_nuclear_organelle_associated_protein_2	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	ESPN--NPHP4	2	0	ESPN	2656	chr1:6488479:+	NPHP4	30673	chr1:5969273:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ESPN->chr1:6484848-6521430:+,espin,NPHP4->chr1:5922871-6052533:-,nephronophthisis_4	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	NME7--CCDC181	2	0	NME7	1260	chr1:169336946:-	CCDC181	31241	chr1:169366629:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:-:[26903],NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,CCDC181->chr1:169364108-169429907:-,coiled-coil_domain_containing_181	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	RARRES1--ATP5C1	2	0	RARRES1	3816	chr3:158428527:-	ATP5C1	13259	chr10:7839010:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RARRES1->Oncogene{Bushman},chr3:158414681-158450485:-,retinoic_acid_receptor_responder_1,ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	HCC1187_BREAST	1	1	0.0211	TRUE	0	1	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	TNRC18--FOXK1	2	0	TNRC18	3660	chr7:5460691:-	FOXK1	46988	chr7:4780469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,FOXK1->chr7:4683388-4811074:+,forkhead_box_K1	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	VPS45--LURAP1L	2	0	VPS45	1639	chr1:150040007:+	LURAP1L	24618	chr9:12821385:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	VPS45->chr1:150039369-150117505:+,vacuolar_protein_sorting_45_homolog,LURAP1L->chr9:12775020-12822130:+,leucine_rich_adaptor_protein_1_like	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2--IGH@	1036	306	BCL2	7748	chr18:60793496:-	IGH@	107384	chr14:106330059:-	INCL_NON_REF_SPLICE	YES	1	9	1	0.99	8.0103	2.366	chimerdb_pubmed{malignant hematological and immunopathological diseases,nonHodgkin's lymphoma,intramucosal carcinoma (IMC),Hodgkin's lymphoma,Follicular lymphoma (FL),Bcell tumors,nonHodgkin's lymphoma (NHL),prostatic adenocarcinoma, benign prostatic hyperplasia (BPH),follicular lymphoma,mucosaassociated lymphoid tissue lymphoma,follicular lymphomas,lymphoma/leukemia,leukemia and lymphoma,hematological malignancy},BCL2->ArcherDX_panel,B-cell_CLL/lymphoma_2,FoundationOne_panel,Oncogene{Bushman},chr18:60790579-60987361:-,IGH@->Oncogene{Bushman}	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	10.3763	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2--IGH@	593	330	BCL2	7750	chr18:60793494:-	IGH@	106985	chr14:106330458:-	INCL_NON_REF_SPLICE	YES	1	0	1	1	4.585	2.5515	chimerdb_pubmed{malignant hematological and immunopathological diseases,nonHodgkin's lymphoma,intramucosal carcinoma (IMC),Hodgkin's lymphoma,Follicular lymphoma (FL),Bcell tumors,nonHodgkin's lymphoma (NHL),prostatic adenocarcinoma, benign prostatic hyperplasia (BPH),follicular lymphoma,mucosaassociated lymphoid tissue lymphoma,follicular lymphomas,lymphoma/leukemia,leukemia and lymphoma,hematological malignancy},BCL2->ArcherDX_panel,B-cell_CLL/lymphoma_2,FoundationOne_panel,Oncogene{Bushman},chr18:60790579-60987361:-,IGH@->Oncogene{Bushman}	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	7.1365	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MCUR1--SRSF10	186	0	MCUR1	11892	chr6:13790712:-	SRSF10	27160	chr1:24296868:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4381	0	MCUR1->chr6:13786789-13814800:-,mitochondrial_calcium_uniporter_regulator_1,SRSF10->chr1:24291294-24307417:-,serine/arginine-rich_splicing_factor_10	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.4381	TRUE	1	0	0	3	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOL9--GNB1	169	64	NOL9	1429	chr1:6614167:-	GNB1	35590	chr1:1718492:-	ONLY_REF_SPLICE	YES	15	328	0.94	0.42	1.3067	0.4948	NOL9->chr1:6581407-6614595:-,nucleolar_protein_9,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.94	1.8015	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF1--ROBO2	83	19	IKZF1	5418	chr7:50367353:+	ROBO2	31386	chr3:77530250:+	ONLY_REF_SPLICE	YES	133	0	0.43	1	0.6417	0.1469	IKZF1->ArcherDX_panel,FoundationOne_panel,IKAROS_family_zinc_finger_1,Oncogene{Bushman},chr7:50343720-50472799:+,ROBO2->chr3:75955846-77699115:+,roundabout_guidance_receptor_2	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.7886	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2--IGH@	4	331	BCL2	7750	chr18:60793494:-	IGH@	105793	chr14:106331650:-	INCL_NON_REF_SPLICE	YES	1	0	1	1	0.0309	2.5593	chimerdb_pubmed{malignant hematological and immunopathological diseases,nonHodgkin's lymphoma,intramucosal carcinoma (IMC),Hodgkin's lymphoma,Follicular lymphoma (FL),Bcell tumors,nonHodgkin's lymphoma (NHL),prostatic adenocarcinoma, benign prostatic hyperplasia (BPH),follicular lymphoma,mucosaassociated lymphoid tissue lymphoma,follicular lymphomas,lymphoma/leukemia,leukemia and lymphoma,hematological malignancy},BCL2->ArcherDX_panel,B-cell_CLL/lymphoma_2,FoundationOne_panel,Oncogene{Bushman},chr18:60790579-60987361:-,IGH@->Oncogene{Bushman}	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.5902	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2--IGH@	43	20	BCL2	6555	chr18:60794689:-	IGH@	130586	chr14:106111126:-	INCL_NON_REF_SPLICE	YES	227	223	0.22	0.22	0.3325	0.1546	chimerdb_pubmed{malignant hematological and immunopathological diseases,nonHodgkin's lymphoma,intramucosal carcinoma (IMC),Hodgkin's lymphoma,Follicular lymphoma (FL),Bcell tumors,nonHodgkin's lymphoma (NHL),prostatic adenocarcinoma, benign prostatic hyperplasia (BPH),follicular lymphoma,mucosaassociated lymphoid tissue lymphoma,follicular lymphomas,lymphoma/leukemia,leukemia and lymphoma,hematological malignancy},BCL2->ArcherDX_panel,B-cell_CLL/lymphoma_2,FoundationOne_panel,Oncogene{Bushman},chr18:60790579-60987361:-,IGH@->Oncogene{Bushman}	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.22	0.4871	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAM16--NLRC3	36	0	PAM16	2160	chr16:4401233:-	NLRC3	14066	chr16:3617325:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2783	0	PAM16->chr16:4381550-4405608:-,presequence_translocase-associated_motor_16_homolog_(S._cerevisiae),NLRC3->NLR_family,_CARD_domain_containing_3,chr16:3589033-3627401:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2783	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2--IGH@	11	21	BCL2	6555	chr18:60794689:-	IGH@	121672	chr14:106209407:-	INCL_NON_REF_SPLICE	YES	227	89	0.12	0.26	0.0851	0.1624	chimerdb_pubmed{malignant hematological and immunopathological diseases,nonHodgkin's lymphoma,intramucosal carcinoma (IMC),Hodgkin's lymphoma,Follicular lymphoma (FL),Bcell tumors,nonHodgkin's lymphoma (NHL),prostatic adenocarcinoma, benign prostatic hyperplasia (BPH),follicular lymphoma,mucosaassociated lymphoid tissue lymphoma,follicular lymphomas,lymphoma/leukemia,leukemia and lymphoma,hematological malignancy},BCL2->ArcherDX_panel,B-cell_CLL/lymphoma_2,FoundationOne_panel,Oncogene{Bushman},chr18:60790579-60987361:-,IGH@->Oncogene{Bushman}	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.26	0.2475	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAM16--NLRC3	11	0	PAM16	2160	chr16:4401233:-	NLRC3	14005	chr16:3617386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0851	0	PAM16->chr16:4381550-4405608:-,presequence_translocase-associated_motor_16_homolog_(S._cerevisiae),NLRC3->NLR_family,_CARD_domain_containing_3,chr16:3589033-3627401:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0851	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LRRK2--RP11-444D3.1	7	1	LRRK2	8661	chr12:40637483:+	RP11-444D3.1	65387	chr12:24521573:-	ONLY_REF_SPLICE	YES	9	0	0.47	1	0.0541	0.0077	LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2,RP11-444D3.1->chr12:24366190-24715524:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.0618	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	6	0	PTMA	6002	chr2:232576635:+	NCL	13906	chr2:232327976:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0464	TRUE	0	0	0	3	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAM16--NLRC3	5	1	PAM16	2457	chr16:4400936:-	NLRC3	14066	chr16:3617325:-	ONLY_REF_SPLICE	YES	1	8	0.86	0.43	0.0387	0.0077	PAM16->chr16:4381550-4405608:-,presequence_translocase-associated_motor_16_homolog_(S._cerevisiae),NLRC3->NLR_family,_CARD_domain_containing_3,chr16:3589033-3627401:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.86	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF1--ROBO2	3	7	IKZF1	5418	chr7:50367353:+	ROBO2	32507	chr3:77542395:+	ONLY_REF_SPLICE	YES	133	9	0.07	0.53	0.0232	0.0541	IKZF1->ArcherDX_panel,FoundationOne_panel,IKAROS_family_zinc_finger_1,Oncogene{Bushman},chr7:50343720-50472799:+,ROBO2->chr3:75955846-77699115:+,roundabout_guidance_receptor_2	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.53	0.0773	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC139100.2--ADNP2	4	2	AC139100.2	3438	chr18:77920486:+	ADNP2	17573	chr18:77893495:+	ONLY_REF_SPLICE	YES	0	41	1	0.13	0.0309	0.0155	LOCAL_REARRANGEMENT:+:[401],AC139100.2->chr18:77905807-77936315:+,ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAM16--NLRC3	4	1	PAM16	2457	chr16:4400936:-	NLRC3	14005	chr16:3617386:-	ONLY_REF_SPLICE	YES	1	8	0.83	0.38	0.0309	0.0077	PAM16->chr16:4381550-4405608:-,presequence_translocase-associated_motor_16_homolog_(S._cerevisiae),NLRC3->NLR_family,_CARD_domain_containing_3,chr16:3589033-3627401:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.83	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCBP2--MTND2P28	4	0	PCBP2	11835	chr12:53856343:+	MTND2P28	25766	chr1:565066:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	0	0	0	9	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC139100.2--ADNP2	3	2	AC139100.2	1331	chr18:77906137:+	ADNP2	17573	chr18:77893495:+	ONLY_REF_SPLICE	YES	3	41	0.62	0.11	0.0232	0.0155	LOCAL_REARRANGEMENT:+:[401],AC139100.2->chr18:77905807-77936315:+,ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.62	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFMID--FAM195B	3	0	AFMID	2467	chr17:76187141:+	FAM195B	17419	chr17:79782430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	AFMID->arylformamidase,chr17:76183398-76203782:+,FAM195B->chr17:79780287-79791178:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC91--RP11-444D3.1	3	0	CCDC91	21147	chr12:28544344:+	RP11-444D3.1	37259	chr12:24560500:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RP11-444D3.1->chr12:24366190-24715524:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPZL1--RCSD1	3	0	MPZL1	2051	chr1:167691479:+	RCSD1	26114	chr1:167653137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:+:[14943],MPZL1->chr1:167690429-167761156:+,myelin_protein_zero_like_1,RCSD1->RCSD_domain_containing_1,chr1:167599330-167675486:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCBP2--MTND2P28	3	0	PCBP2	11799	chr12:53856307:+	MTND2P28	25731	chr1:565031:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0232	0	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	9	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKT1--PPP2R3B	2	0	AKT1	4154	chr14:105258935:-	PPP2R3B	24758	chrX:308428:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	AKT1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr14:105235686-105262088:-,v-akt_murine_thymoma_viral_oncogene_homolog_1,PPP2R3B->chrX:294698-347690:-,chrY:244698-297690:-,protein_phosphatase_2_regulatory_subunit_B'',_beta	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANAPC5--EZH2	2	0	ANAPC5	10099	chr12:121773336:-	EZH2	34298	chr7:148529842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	ANAPC5->anaphase_promoting_complex_subunit_5,chr12:121746048-121837699:-,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP5G2--R3HDM2	2	0	ATP5G2	6916	chr12:54062932:-	R3HDM2	16142	chr12:57704246:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-,R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BTRC--NUP205	2	0	BTRC	1166	chr10:103113985:+	NUP205	64702	chr7:135330906:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+,NUP205->chr7:135242667-135333505:+,nucleoporin_205kDa	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCAR1--BTG3	2	0	CCAR1	19216	chr10:70532856:+	BTG3	31078	chr21:18981470:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	CCAR1->cell_division_cycle_and_apoptosis_regulator_1,chr10:70480769-70552134:+,BTG3->BTG_family_member_3,chr21:18965971-18985265:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC18--DNA2	2	0	CCDC18	1934	chr1:93646409:+	DNA2	53978	chr10:70176612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18,DNA2->DNA_replication_helicase/nuclease_2,chr10:70173821-70231879:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT2--NAP1L1	2	0	CNOT2	1487	chr12:70637260:+	NAP1L1	42311	chr12:76454059:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUL3--TTLL4	2	0	CUL3	1450	chr2:225449661:-	TTLL4	36972	chr2:219591992:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,TTLL4->chr2:219575568-219620139:+,tubulin_tyrosine_ligase_like_4	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DUS1L--EEF1D	2	0	DUS1L	8107	chr17:80016657:-	EEF1D	23509	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	DUS1L->chr17:80015382-80023763:-,dihydrouridine_synthase_1_like,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF3K--MAP4K1	2	0	EIF3K	2332	chr19:39111075:+	MAP4K1	35764	chr19:39078457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	LOCAL_INVERSION:+:-:[213],EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,MAP4K1->chr19:39078281-39109522:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_1	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM19A2--COL9A3	2	0	FAM19A2	6794	chr12:62652544:-	COL9A3	51828	chr20:61464372:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2,COL9A3->chr20:61447596-61472511:+,collagen_type_IX_alpha_3	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--LARP4B	2	0	FAM208B	1338	chr10:5727138:+	LARP4B	41505	chr10:910210:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM213A--LARS	2	0	FAM213A	4555	chr10:82182264:+	LARS	35895	chr5:145509721:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	FAM213A->chr10:82167585-82192753:+,family_with_sequence_similarity_213_member_A,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0907--TAF12	2	0	KIAA0907	1768	chr1:155903424:-	TAF12	21182	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	KIAA0907->KIAA0907,chr1:155882834-155904191:-,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00467--CHAF1A	2	0	LINC00467	1123	chr1:211556267:+	CHAF1A	14062	chr19:4418017:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	LINC00467->chr1:211556145-211605878:+,long_intergenic_non-protein_coding_RNA_467,CHAF1A->chr19:4402659-4445015:+,chromatin_assembly_factor_1_subunit_A	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LRPPRC--ATP6V0A1	2	0	LRPPRC	20296	chr2:44170826:-	ATP6V0A1	68482	chr17:40665879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	LRPPRC->chr2:44113647-44223144:-,leucine_rich_pentatricopeptide_repeat_containing,ATP6V0A1->ATPase_H+_transporting_V0_subunit_a1,chr17:40610862-40674629:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MATR3--ACAP2	2	0	MATR3	3802	chr5:138614097:+	ACAP2	43777	chr3:195066046:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	MATR3->chr5:138609441-138667360:+,matrin_3,ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR17HG--SLC35B2	2	0	MIR17HG	2213	chr13:92002024:+	SLC35B2	10169	chr6:44224615:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	MIR17HG->chr13:92000074-92006833:+,miR-17-92a-1_cluster_host_gene,SLC35B2->chr6:44221833-44225291:-,solute_carrier_family_35_member_B2	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NEDD1--CDK17	2	0	NEDD1	1634	chr12:97301634:+	CDK17	24557	chr12:96728643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	NEDD1->chr12:97301001-97347129:+,neural_precursor_cell_expressed,_developmentally_down-regulated_1,CDK17->chr12:96672039-96794338:-,cyclin-dependent_kinase_17	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUCKS1--QSOX2	2	0	NUCKS1	1320	chr1:205719085:-	QSOX2	22081	chr9:139111010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1,QSOX2->chr9:139098179-139137687:-,quiescin_sulfhydryl_oxidase_2	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP155--PHF11	2	0	NUP155	1361	chr5:37370923:-	PHF11	49661	chr13:50095030:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	NUP155->chr5:37288239-37371283:-,nucleoporin_155kDa,PHF11->PHD_finger_protein_11,chr13:50069746-50103123:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RACGAP1--RAP1B	2	0	RACGAP1	3498	chr12:50419181:-	RAP1B	32235	chr12:69042479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-,RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RGL1--EDEM3	2	0	RGL1	1417	chr1:183605636:+	EDEM3	36867	chr1:184692990:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,EDEM3->ER_degradation_enhancing_alpha-mannosidase_like_protein_3,chr1:184659365-184724047:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEL1L--TMEM260	2	0	SEL1L	1187	chr14:82000019:-	TMEM260	37893	chr14:57072288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-,TMEM260->chr14:56955072-57117324:+,transmembrane_protein_260	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCA5--ASUN	2	0	SMARCA5	20342	chr4:144469293:+	ASUN	33871	chr12:27081838:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	SMARCA5->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_5,chr4:144434616-144478639:+,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SOS2--NEMF	2	0	SOS2	20405	chr14:50611888:-	NEMF	49400	chr14:50281575:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-,NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TACC3--LRR1	2	0	TACC3	3178	chr4:1725597:+	LRR1	21572	chr14:50069088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3,LRR1->chr14:50065415-50081390:+,leucine_rich_repeat_protein_1	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP10--HP1BP3	2	0	USP10	1134	chr16:84733717:+	HP1BP3	26177	chr1:21106404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZDHHC14--ARID1B	2	0	ZDHHC14	2134	chr6:157803298:+	ARID1B	25905	chr6:157150361:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	ZDHHC14->Oncogene{Bushman},chr6:157802165-158099178:+,zinc_finger_DHHC-type_containing_14,ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--PASK	1	2	AC131097.3	2273	chr2:242824786:+	PASK	13463	chr2:242082489:-	ONLY_REF_SPLICE	YES	9	5	0.25	0.38	0.0077	0.0155	AC131097.3->chr2:242823514-243020873:+,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.38	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAPOLA--VRK1	1	1	PAPOLA	2168	chr14:96968937:+	VRK1	34194	chr14:97299804:+	ONLY_REF_SPLICE	NO	113	10	0.02	0.17	0.0077	0.0077	PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.17	0.0154	TRUE	0	3	0	2	2	TRUE	ACH-000151
HS939T_SKIN	MICAL3--ATP6V1E1	85	31	MICAL3	2388	chr22:18484159:-	ATP6V1E1	68424	chr22:18083947:-	ONLY_REF_SPLICE	YES	59	486	0.66	0.19	0.9459	0.345	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,ATP6V1E1->ATPase_H+_transporting_V1_subunit_E1,chr22:18074902-18111584:-	HS939T_SKIN	0.19	0.66	1.2909	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	MICAL3--ATP6V1E1	43	25	MICAL3	1279	chr22:18507047:-	ATP6V1E1	68424	chr22:18083947:-	ONLY_REF_SPLICE	YES	44	486	0.61	0.12	0.4785	0.2782	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,ATP6V1E1->ATPase_H+_transporting_V1_subunit_E1,chr22:18074902-18111584:-	HS939T_SKIN	0.12	0.61	0.7567	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	CCDC149--LIMCH1	11	3	CCDC149	11870	chr4:24833128:-	LIMCH1	58747	chr4:41668578:+	ONLY_REF_SPLICE	YES	20	0	0.41	1	0.1224	0.0334	CCDC149->chr4:24807739-24981826:-,coiled-coil_domain_containing_149,LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+	HS939T_SKIN	0.41	1	0.1558	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	CTD-2026G6.3--FGD5	8	1	CTD-2026G6.3	1022	chr3:75629129:-	FGD5	8837	chr3:14905635:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.089	0.0111	CTD-2026G6.3->chr3:75589200-75629150:-,FGD5->FYVE,_RhoGEF_and_PH_domain_containing_5,chr3:14860469-14975895:+	HS939T_SKIN	0.9	1	0.1001	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	RNLS--CRYL1	3	0	RNLS	7473	chr10:90074223:-	CRYL1	22163	chr13:20987526:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	RNLS->chr10:90033621-90344287:-,renalase,_FAD-dependent_amine_oxidase,CRYL1->chr13:20977806-21099996:-,crystallin_lambda_1	HS939T_SKIN	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	TUBB4B--FTH1	3	0	TUBB4B	1128	chr9:140135792:+	FTH1	6697	chr11:61734931:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	HS939T_SKIN	1	1	0.0334	TRUE	0	0	0	6	0	TRUE	ACH-000814
HS939T_SKIN	FARS2--KIF6	2	3	FARS2	8405	chr6:5545573:+	KIF6	18543	chr6:39659638:-	ONLY_REF_SPLICE	YES	44	3	0.1	0.62	0.0223	0.0334	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,KIF6->chr6:39297766-39693181:-,kinesin_family_member_6	HS939T_SKIN	0.1	0.62	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	INVS--MSANTD3	2	0	INVS	5175	chr9:102888831:+	MSANTD3	32397	chr9:103204188:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	INVS->chr9:102861538-103063282:+,inversin,MSANTD3->Myb/SANT_DNA_binding_domain_containing_3,chr9:103189438-103213511:+	HS939T_SKIN	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	KIAA0907--GARS	2	0	KIAA0907	1768	chr1:155903424:-	GARS	31459	chr7:30661009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	KIAA0907->KIAA0907,chr1:155882834-155904191:-,GARS->chr7:30634297-30673649:+,glycyl-tRNA_synthetase	HS939T_SKIN	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	24705	chr7:11091239:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HS939T_SKIN	1	1	0.0223	TRUE	0	2	0	3	0	TRUE	ACH-000814
HS939T_SKIN	SKP1--CDKL3	2	0	SKP1	1184	chr5:133512546:-	CDKL3	40359	chr5:133541822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_REARRANGEMENT:-:[28576],SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	HS939T_SKIN	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	FARS2--KIF6	1	2	FARS2	8405	chr6:5545573:+	KIF6	22576	chr6:39602734:-	ONLY_REF_SPLICE	YES	44	3	0.06	0.5	0.0111	0.0223	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,KIF6->chr6:39297766-39693181:-,kinesin_family_member_6	HS939T_SKIN	0.06	0.5	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	FARS2--KIF6	1	1	FARS2	8405	chr6:5545573:+	KIF6	25842	chr6:39564036:-	ONLY_REF_SPLICE	YES	44	2	0.04	0.5	0.0111	0.0111	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,KIF6->chr6:39297766-39693181:-,kinesin_family_member_6	HS939T_SKIN	0.04	0.5	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS940T_FIBROBLAST	CALM3--MYL6	39	0	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.404	0	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	HS940T_FIBROBLAST	1	1	0.404	TRUE	0	0	0	8	0	TRUE	ACH-000135
HS940T_FIBROBLAST	COL1A1--SPARC	6	0	COL1A1	2564	chr17:48277211:-	SPARC	29508	chr5:151051220:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0622	0	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS940T_FIBROBLAST	1	1	0.0622	TRUE	0	0	0	3	0	TRUE	ACH-000135
HS940T_FIBROBLAST	CTGF--ACTB	6	0	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0622	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS940T_FIBROBLAST	1	1	0.0622	TRUE	0	0	0	9	0	TRUE	ACH-000135
HS940T_FIBROBLAST	COL4A2--COL6A2	2	0	COL4A2	15519	chr13:111092180:+	COL6A2	57966	chr21:47537314:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},HGNC_GENEFAM,PROTCLUST,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS940T_FIBROBLAST	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000135
HS940T_FIBROBLAST	CPQ--SDC2	2	0	CPQ	1176	chr8:97657630:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	HS940T_FIBROBLAST	1	1	0.0207	TRUE	1	37	5	9	9	TRUE	ACH-000135
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	216	221	MLLT10	2720	chr10:21827841:+	PICALM	61585	chr11:85670103:-	ONLY_REF_SPLICE	YES	54	122	0.89	0.78	2.5615	2.6208	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.89	5.1823	TRUE	0	0	0	2	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUX1--MARK3	127	12	CUX1	1415	chr7:101459373:+	MARK3	67786	chr14:103923479:+	ONLY_REF_SPLICE	YES	19	138	0.88	0.5	1.5061	0.1423	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.88	1.6484	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	21	232	MLLT10	7159	chr10:21846753:+	PICALM	61585	chr11:85670103:-	ONLY_REF_SPLICE	YES	1	122	1	0.67	0.249	2.7513	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	3.0003	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAT1--TRMT11	55	39	HAT1	9507	chr2:172823470:+	TRMT11	25344	chr6:126329538:+	ONLY_REF_SPLICE	YES	1330	82	0.07	0.53	0.6522	0.4625	{Klijn_CCL:Lymphoid=1},HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1,TRMT11->chr6:126307576-126360422:+,tRNA_methyltransferase_11_homolog	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.53	1.1147	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	1	223	MLLT10	4977	chr10:21840850:+	PICALM	61585	chr11:85670103:-	ONLY_REF_SPLICE	YES	53	122	0.81	0.65	0.0119	2.6446	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.81	2.6565	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	1	221	MLLT10	2720	chr10:21827841:+	PICALM	60482	chr11:85671820:-	ONLY_REF_SPLICE	YES	54	140	0.8	0.61	0.0119	2.6208	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.8	2.6327	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-574K11.29	45	7	TIMM23	6952	chr10:51606988:-	RP11-574K11.29	13578	chr10:75473090:-	INCL_NON_REF_SPLICE	YES	323	3	0.14	0.95	0.5337	0.083	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.29->chr10:75463493-75473339:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.95	0.6167	TRUE	1	1	0	6	1	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	1	145	MLLT10	1640	chr10:21823733:+	PICALM	61585	chr11:85670103:-	ONLY_REF_SPLICE	NO	62	122	0.7	0.54	0.0119	1.7196	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.7	1.7315	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--MLLT10	23	10	PICALM	23636	chr11:85685751:-	MLLT10	38328	chr10:21875223:+	ONLY_REF_SPLICE	YES	131	1	0.2	0.97	0.2728	0.1186	Mitelman{ALL=2},YOSHIHARA_TCGA_num_samples[LAML:2],{Klijn_CCL:Lymphoid=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.97	0.3914	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCAPG2--ESYT2	15	16	NCAPG2	16200	chr7:158464206:-	ESYT2	42021	chr7:158591763:-	ONLY_REF_SPLICE	YES	562	91	0.05	0.25	0.1779	0.1897	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:-:[26166],NCAPG2->chr7:158424003-158497520:-,non-SMC_condensin_II_complex_subunit_G2,ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.25	0.3676	TRUE	0	0	0	2	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAD51B--FAM71D	10	6	RAD51B	18898	chr14:68878244:+	FAM71D	51134	chr14:67688496:+	ONLY_REF_SPLICE	YES	19	0	0.46	1	0.1186	0.0712	RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+,FAM71D->chr14:67656110-67695267:+,family_with_sequence_similarity_71_member_D	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	0.1898	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA6--HAT1	9	1	ITGA6	1617	chr2:173292698:+	HAT1	30761	chr2:172782047:+	ONLY_REF_SPLICE	YES	83	49	0.11	0.17	0.1067	0.0119	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.17	0.1186	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-249H1.4--RP11-367G18.1	7	4	RP1-249H1.4	2789	chr6:114191469:-	RP11-367G18.1	10356	chr6:113948877:-	INCL_NON_REF_SPLICE	YES	52	1	0.17	0.92	0.083	0.0474	RP1-249H1.4->chr6:114189178-114194516:-,RP11-367G18.1->chr6:113944737-113971276:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.92	0.1304	TRUE	0	0	0	3	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUX1--MARK3	4	9	CUX1	1415	chr7:101459373:+	MARK3	69926	chr14:103928742:+	ONLY_REF_SPLICE	YES	19	129	0.41	0.09	0.0474	0.1067	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.41	0.1541	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELMO1--AOAH	4	8	ELMO1	9486	chr7:37354454:-	AOAH	47623	chr7:36713614:-	ONLY_REF_SPLICE	YES	111	79	0.1	0.13	0.0474	0.0949	ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1,AOAH->acyloxyacyl_hydrolase,chr7:36552456-36764154:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.13	0.1423	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEIS2--CTD-2515H24.4	5	3	MEIS2	12226	chr15:37329015:-	CTD-2515H24.4	28297	chr15:57821206:-	INCL_NON_REF_SPLICE	YES	14	0	0.36	1	0.0593	0.0356	MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,CTD-2515H24.4->chr15:57819385-57821207:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.0949	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--SKI	5	0	C17orf76-AS1	1593	chr17:16342728:+	SKI	17511	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	C17orf76-AS1->chr17:16342136-16381992:+,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0593	TRUE	0	0	0	2	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA6--DYNC1I2	5	0	ITGA6	1117	chr2:173292198:+	DYNC1I2	29914	chr2:172546657:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,DYNC1I2->chr2:172543919-172604930:+,dynein_cytoplasmic_1_intermediate_chain_2	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--KBTBD11	4	0	ITGA4	11125	chr2:182350719:+	KBTBD11	40487	chr8:1954711:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,KBTBD11->chr8:1922044-1955102:+,kelch_repeat_and_BTB_domain_containing_11	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--MLLT10	1	10	PICALM	23636	chr11:85685751:-	MLLT10	37276	chr10:21860904:+	ONLY_REF_SPLICE	YES	131	1	0.08	0.92	0.0119	0.1186	Mitelman{ALL=2},YOSHIHARA_TCGA_num_samples[LAML:2],{Klijn_CCL:Lymphoid=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.92	0.1305	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAD51B--MPP5	2	6	RAD51B	18898	chr14:68878244:+	MPP5	42781	chr14:67736418:+	ONLY_REF_SPLICE	YES	19	18	0.3	0.31	0.0237	0.0712	RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.31	0.0949	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00926--IRF2BP2	3	0	LINC00926	1560	chr15:57593122:+	IRF2BP2	10271	chr1:234743598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	LINC00926->chr15:57592563-57599959:+,long_intergenic_non-protein_coding_RNA_926,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NADK--PTMA	3	0	NADK	12501	chr1:1685546:-	PTMA	20006	chr2:232573234:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	NADK->NAD_kinase,chr1:1682671-1711896:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AZU1--AHSA2	2	0	AZU1	3807	chr19:829706:+	AHSA2	10681	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	AZU1->azurocidin_1,chr19:825097-832017:+,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf63--NCAPH2	2	0	C1orf63	13914	chr1:25571641:-	NCAPH2	26303	chr22:50959394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,NCAPH2->chr22:50946645-50961901:+,non-SMC_condensin_II_complex_subunit_H2	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU2--TRIM13	2	0	DLEU2	5811	chr13:50642233:-	TRIM13	16508	chr13:50571803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	LOCAL_INVERSION:-:+:[6652],DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),TRIM13->chr13:50570024-50594617:+,tripartite_motif_containing_13	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	1	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTL--PPP2R5A	2	0	DTL	13203	chr1:212254092:+	PPP2R5A	28627	chr1:212502477:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	1	0	3	1	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ESYT2--AHSA2	2	0	ESYT2	19948	chr7:158536220:-	AHSA2	33700	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCKAP1L--TRIM22	2	0	NCKAP1L	12085	chr12:54911722:+	TRIM22	34846	chr11:5719545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	NCKAP1L->NCK_associated_protein_1_like,chr12:54891495-54937726:+,TRIM22->chr11:5710919-5758319:+,tripartite_motif_containing_22	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--DDX39B	2	0	RCC1	1142	chr1:28832596:+	DDX39B	28781	chr6:31499182:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	1	0	1	1	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-361D15.2--PNPLA8	2	0	RP11-361D15.2	1060	chr15:59980775:+	PNPLA8	8818	chr7:108161965:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	RP11-361D15.2->chr15:59980716-59981617:+,PNPLA8->chr7:108110866-108210110:-,patatin_like_phospholipase_domain_containing_8	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL27A--RNF149	2	0	RPL27A	3482	chr11:8706439:+	RNF149	24307	chr2:101888206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	RPL27A->chr11:8703958-8736306:+,ribosomal_protein_L27a,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TASP1--XRN2	2	0	TASP1	11495	chr20:13550154:-	XRN2	45706	chr20:21349101:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	TASP1->chr20:13246709-13619587:-,taspase_1,XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAS1--RNF149	2	0	ZFAS1	2031	chr20:47895745:+	RNF149	20350	chr2:101888206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	1	0	3	1	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPP6--SP4	1	1	MPP6	1326	chr7:24613212:+	SP4	27537	chr7:21468295:+	ONLY_REF_SPLICE	YES	3	6	0.4	0.25	0.0119	0.0119	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,SP4->Sp4_transcription_factor,chr7:21467652-21554440:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.4	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000406
RL952_ENDOMETRIUM	RARB--NGLY1	130	39	RARB	7449	chr3:25542814:+	NGLY1	23063	chr3:25805802:-	ONLY_REF_SPLICE	YES	26	33	0.87	0.84	1.3204	0.3961	RARB->Oncogene{Bushman},chr3:25215823-25639423:+,retinoic_acid_receptor_beta,NGLY1->N-glycanase_1,chr3:25760435-25831530:-	RL952_ENDOMETRIUM	0.84	0.87	1.7165	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	120	35	CNOT1	1159	chr16:58663632:-	SLC38A7	55511	chr16:58714145:-	ONLY_REF_SPLICE	YES	40	43	0.79	0.78	1.2189	0.3555	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.78	0.79	1.5744	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	69	43	CNOT1	1159	chr16:58663632:-	SLC38A7	52514	chr16:58718082:-	ONLY_REF_SPLICE	YES	40	15	0.74	0.88	0.7008	0.4368	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.74	0.88	1.1376	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	UBA1--UBE2W	53	0	UBA1	13612	chrX:47068566:+	UBE2W	35321	chr8:74701725:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5383	0	UBA1->chrX:47050260-47074527:+,ubiquitin_like_modifier_activating_enzyme_1,UBE2W->chr8:74692332-74791145:-,ubiquitin_conjugating_enzyme_E2_W_(putative)	RL952_ENDOMETRIUM	1	1	0.5383	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	RP11-421F16.3--SUMO3	37	0	RP11-421F16.3	1829	chr12:27125347:+	SUMO3	11565	chr21:46228445:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3758	0	RP11-421F16.3->chr12:27124519-27132515:+,SUMO3->chr21:46225532-46238694:-,small_ubiquitin-like_modifier_3	RL952_ENDOMETRIUM	1	1	0.3758	TRUE	0	0	0	3	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	9	37	CNOT1	1159	chr16:58663632:-	SLC38A7	52609	chr16:58717987:-	ONLY_REF_SPLICE	YES	40	37	0.53	0.55	0.0914	0.3758	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.53	0.55	0.4672	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	1	48	CNOT1	3429	chr16:58657186:-	SLC38A7	52514	chr16:58718082:-	ONLY_REF_SPLICE	NO	96	15	0.34	0.77	0.0102	0.4875	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.34	0.77	0.4977	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	1	39	CNOT1	2281	chr16:58658577:-	SLC38A7	55511	chr16:58714145:-	ONLY_REF_SPLICE	YES	119	43	0.25	0.48	0.0102	0.3961	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.25	0.48	0.4063	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	1	39	CNOT1	3429	chr16:58657186:-	SLC38A7	55511	chr16:58714145:-	ONLY_REF_SPLICE	YES	96	43	0.29	0.48	0.0102	0.3961	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.29	0.48	0.4063	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	1	39	CNOT1	2301	chr16:58658557:-	SLC38A7	55511	chr16:58714145:-	ONLY_REF_SPLICE	YES	123	43	0.25	0.48	0.0102	0.3961	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.25	0.48	0.4063	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	EXOC6B--TACR1	5	3	EXOC6B	19117	chr2:72692289:-	TACR1	38254	chr2:75347894:-	ONLY_REF_SPLICE	YES	51	0	0.14	1	0.0508	0.0305	EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B,TACR1->chr2:75273590-75426826:-,tachykinin_receptor_1	RL952_ENDOMETRIUM	0.14	1	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	TTF1--CCNY	3	1	TTF1	11418	chr9:135261943:-	CCNY	20406	chr10:35578329:+	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0305	0.0102	TTF1->chr9:135251008-135282209:-,transcription_termination_factor,_RNA_polymerase_I,CCNY->chr10:35535953-35860852:+,cyclin_Y	RL952_ENDOMETRIUM	0.2	1	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	2	0	CNOT1	1159	chr16:58663632:-	SLC38A7	63616	chr16:58704071:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	RP11-2C24.4--CPNE1	2	0	RP11-2C24.4	2209	chr16:30753229:+	CPNE1	13172	chr20:34220845:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RP11-2C24.4->chr16:30751988-30762702:+,CPNE1->chr20:34213953-34252878:-,copine_1	RL952_ENDOMETRIUM	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	UBL3--SLC7A1	2	0	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	RL952_ENDOMETRIUM	1	1	0.0203	TRUE	1	5	0	8	1	TRUE	ACH-000965
MHHNB11_AUTONOMIC_GANGLIA	KIF5C--GALNT13	50	10	KIF5C	17355	chr2:149840280:+	GALNT13	38872	chr2:154757449:+	ONLY_REF_SPLICE	YES	56	0	0.52	1	0.482	0.0964	{Klijn_CCL:Brain=1},KIF5C->chr2:149632819-149883273:+,kinesin_family_member_5C,GALNT13->chr2:154728426-155310361:+,polypeptide_N-acetylgalactosaminyltransferase_13	MHHNB11_AUTONOMIC_GANGLIA	0.52	1	0.5784	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TSPAN5--ADH4	24	3	TSPAN5	1484	chr4:99579297:-	ADH4	22838	chr4:100063931:-	ONLY_REF_SPLICE	YES	13	0	0.68	1	0.2313	0.0289	{Klijn_CCL:Lung=1,Brain=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,ADH4->alcohol_dehydrogenase_4_(class_II),_pi_polypeptide,chr4:100044808-100078949:-	MHHNB11_AUTONOMIC_GANGLIA	0.68	1	0.2602	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	AC093642.5--XX-C2158C6.2	14	5	AC093642.5	2310	chr2:243037178:+	XX-C2158C6.2	15418	chr6:171054606:+	ONLY_REF_SPLICE	YES	16	0	0.54	1	0.1349	0.0482	AC093642.5->chr2:243030784-243102304:+,XX-C2158C6.2->chr6:171054606-171055065:+	MHHNB11_AUTONOMIC_GANGLIA	0.54	1	0.1831	TRUE	0	2	0	2	2	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	CPSF6--JAG2	5	3	CPSF6	11046	chr12:69656342:+	JAG2	34882	chr14:105607666:-	INCL_NON_REF_SPLICE	YES	9	1	0.47	0.89	0.0482	0.0289	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,JAG2->Oncogene{Bushman},chr14:105607318-105635161:-,jagged_2	MHHNB11_AUTONOMIC_GANGLIA	0.47	0.89	0.0771	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	AC093642.5--XX-C2158C6.2	4	5	AC093642.5	9202	chr2:243081039:+	XX-C2158C6.2	15418	chr6:171054606:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0386	0.0482	AC093642.5->chr2:243030784-243102304:+,XX-C2158C6.2->chr6:171054606-171055065:+	MHHNB11_AUTONOMIC_GANGLIA	0.82	1	0.0868	TRUE	0	1	0	2	1	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	LEPROTL1--AGFG1	5	0	LEPROTL1	1131	chr8:29953044:+	AGFG1	32888	chr2:228416675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0482	0	LEPROTL1->chr8:29952914-30034724:+,leptin_receptor_overlapping_transcript-like_1,AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0482	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	CPSF6--TP53BP1	4	1	CPSF6	11046	chr12:69656342:+	TP53BP1	30672	chr15:43762264:-	ONLY_REF_SPLICE	YES	9	12	0.36	0.29	0.0386	0.0096	GTEx_v2:{count=2;pct=0.02%;dist=Pituitary=1,Cells_-_EBV-transformed_lymphocytes=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	MHHNB11_AUTONOMIC_GANGLIA	0.29	0.36	0.0482	TRUE	0	0	0	3	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	SNX11--PHF3	4	0	SNX11	5449	chr17:46190235:+	PHF3	27472	chr6:64412398:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	SNX11->chr17:46180719-46200436:+,sorting_nexin_11,PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	FUBP1--IVNS1ABP	3	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0289	TRUE	1	4	0	16	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	MEG3--ATP5G2	3	0	MEG3	11399	chr14:101301845:+	ATP5G2	29068	chr12:54066414:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	MEG3->Oncogene{Bushman},chr14:101245747-101327368:+,maternally_expressed_3_(non-protein_coding),ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	RPS11P5--YBX1	3	0	RPS11P5	1030	chr12:133402316:+	YBX1	9792	chr1:43166619:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	RPS11P5->chr12:133402287-133402772:+,ribosomal_protein_S11_pseudogene_5,YBX1->Oncogene{Bushman},Y-box_binding_protein_1,chr1:43148098-43168020:+	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TSPAN5--ADH4	2	3	TSPAN5	2090	chr4:99578691:-	ADH4	22838	chr4:100063931:-	ONLY_REF_SPLICE	YES	23	0	0.18	1	0.0193	0.0289	{Klijn_CCL:Lung=1,Brain=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,ADH4->alcohol_dehydrogenase_4_(class_II),_pi_polypeptide,chr4:100044808-100078949:-	MHHNB11_AUTONOMIC_GANGLIA	0.18	1	0.0482	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	AC093642.5--XX-C2158C6.2	1	5	AC093642.5	6865	chr2:243064606:+	XX-C2158C6.2	15418	chr6:171054606:+	ONLY_REF_SPLICE	NO	5	0	0.55	1	0.0096	0.0482	AC093642.5->chr2:243030784-243102304:+,XX-C2158C6.2->chr6:171054606-171055065:+	MHHNB11_AUTONOMIC_GANGLIA	0.55	1	0.0578	TRUE	0	0	0	2	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	ACAD11--PDCD5	2	0	ACAD11	2121	chr3:132378447:-	PDCD5	31917	chr19:33078159:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ACAD11->acyl-CoA_dehydrogenase_family_member_11,chr3:132276982-132379567:-,PDCD5->chr19:33071974-33078358:+,programmed_cell_death_5	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	ADD3--EML5	2	0	ADD3	16411	chr10:111879322:+	EML5	37846	chr14:89193022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ADD3->Oncogene{Bushman},adducin_3,chr10:111756126-111895323:+,EML5->chr14:89078775-89259096:-,echinoderm_microtubule_associated_protein_like_5	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	CTNNAL1--ADD3	2	0	CTNNAL1	5462	chr9:111753006:-	ADD3	41821	chr10:111883775:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	CTNNAL1->catenin_alpha_like_1,chr9:111704851-111775809:-,ADD3->Oncogene{Bushman},adducin_3,chr10:111756126-111895323:+	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	PRDX2--NUBPL	2	0	PRDX2	3022	chr19:12910673:-	NUBPL	25206	chr14:32295835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PRDX2->chr19:12907634-12912694:-,peroxiredoxin_2,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	PSMD12--EPRS	2	0	PSMD12	1216	chr17:65362528:-	EPRS	40119	chr1:220162165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PSMD12->chr17:65334032-65362743:-,proteasome_26S_subunit,_non-ATPase_12,EPRS->chr1:220141943-220220000:-,glutamyl-prolyl-tRNA_synthetase	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	RPS3--TIMP2	2	0	RPS3	2292	chr11:75111821:+	TIMP2	18045	chr17:76853728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,TIMP2->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_2,chr17:76849059-76921469:-	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	SLC25A36--FAM120B	2	0	SLC25A36	5624	chr3:140682069:+	FAM120B	33287	chr6:170704575:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	1	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TSPAN5--ADH4	1	4	TSPAN5	1484	chr4:99579297:-	ADH4	20152	chr4:100078949:-	ONLY_REF_SPLICE	NO	13	0	0.28	1	0.0096	0.0386	{Klijn_CCL:Lung=1,Brain=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,ADH4->alcohol_dehydrogenase_4_(class_II),_pi_polypeptide,chr4:100044808-100078949:-	MHHNB11_AUTONOMIC_GANGLIA	0.28	1	0.0482	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TSPAN5--ADH4	1	4	TSPAN5	3554	chr4:99495608:-	ADH4	22313	chr4:100064456:-	ONLY_REF_SPLICE	YES	24	0	0.17	1	0.0096	0.0386	{Klijn_CCL:Lung=1,Brain=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,ADH4->alcohol_dehydrogenase_4_(class_II),_pi_polypeptide,chr4:100044808-100078949:-	MHHNB11_AUTONOMIC_GANGLIA	0.17	1	0.0482	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	UFL1--SNHG5	2	0	UFL1	13671	chr6:96990892:+	SNHG5	26749	chr6:86375865:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	UFL1->UFM1_specific_ligase_1,chr6:96969471-97003152:+,SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	CNOT2--MYO5A	1	1	CNOT2	16342	chr12:70724249:+	MYO5A	54186	chr15:52672105:-	ONLY_REF_SPLICE	YES	45	1	0.04	0.67	0.0096	0.0096	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,MYO5A->chr15:52599480-52821247:-,myosin_VA	MHHNB11_AUTONOMIC_GANGLIA	0.04	0.67	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	SCAF4--TP53BP1	1	1	SCAF4	16796	chr21:33057362:-	TP53BP1	33951	chr15:43762264:-	ONLY_REF_SPLICE	YES	26	12	0.07	0.14	0.0096	0.0096	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	MHHNB11_AUTONOMIC_GANGLIA	0.07	0.14	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000078
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRBV4-2--ZDHHC16	337	0	TRBV4-2	1565	chr7:142045816:+	ZDHHC16	8806	chr10:99212009:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	3.2577	0	TRBV4-2->T_cell_receptor_beta_variable_4-2,chr7:142045252-142045816:+,ZDHHC16->chr10:99205927-99217127:+,zinc_finger_DHHC-type_containing_16	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	3.2577	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--ABL1	36	19	NUP214	42338	chr9:134106156:+	ABL1	51696	chr9:133729451:+	ONLY_REF_SPLICE	YES	38	30	0.59	0.65	0.348	0.1837	chimerdb_omim:{T-cellacutelymphoblasticleukemia},chimerdb_pubmed{Tcell acute lymphoblastic leukemia (TALL),Tcell acute lymphoblastic leukemia,TALL,Tcell leukemia},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.65	0.5317	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--ABL1	1	19	NUP214	42338	chr9:134106156:+	ABL1	51699	chr9:133729454:+	ONLY_REF_SPLICE	YES	38	29	0.34	0.41	0.0097	0.1837	chimerdb_omim:{T-cellacutelymphoblasticleukemia},chimerdb_pubmed{Tcell acute lymphoblastic leukemia (TALL),Tcell acute lymphoblastic leukemia,TALL,Tcell leukemia},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.41	0.1934	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDS5A--RBM47	5	0	PDS5A	2517	chr4:39978060:-	RBM47	54297	chr4:40468716:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-,RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0483	TRUE	0	1	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TFEB--TRERF1	5	0	TFEB	1910	chr6:41703088:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0483	TRUE	0	0	0	2	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C22orf34--BRD1	4	0	C22orf34	1138	chr22:50051053:-	BRD1	33667	chr22:50171461:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	C22orf34->chr22:49808176-50051190:-,chromosome_22_open_reading_frame_34,BRD1->bromodomain_containing_1,chr22:50166931-50221160:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	0	0	0	2	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC17A5--RFX6	4	0	SLC17A5	10677	chr6:74320123:-	RFX6	30689	chr6:117243205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	SLC17A5->chr6:74303102-74363878:-,solute_carrier_family_17_member_5,RFX6->chr6:117198375-117253326:+,regulatory_factor_X6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--CTBP1	3	0	BSG	2405	chr19:572701:+	CTBP1	16163	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSNK1G2--BTBD2	2	0	CSNK1G2	1230	chr19:1941417:+	BTBD2	22552	chr19:1997462:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	LOCAL_INVERSION:+:-:[4110],CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,BTBD2->BTB_domain_containing_2,chr19:1985447-2034880:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	3	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-55O6.12--PKN1	2	0	CTB-55O6.12	2373	chr19:14266291:+	PKN1	12625	chr19:14551955:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	CTB-55O6.12->chr19:14247991-14282079:+,PKN1->chr19:14543865-14582679:+,protein_kinase_N1	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAD1L1--TTYH3	2	0	MAD1L1	26516	chr7:2108829:-	TTYH3	45682	chr7:2686487:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	{Klijn_CCL:Skin=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,TTYH3->chr7:2671585-2704436:+,tweety_family_member_3	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLE--FUS	2	0	POLE	1112	chr12:133263840:-	FUS	48055	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	2	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDF4--SLC7A6	2	0	SDF4	5392	chr1:1158624:-	SLC7A6	15900	chr16:68300496:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF519--PSMG3	2	0	ZNF519	2343	chr18:14124349:-	PSMG3	24141	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AREL1--ZSWIM8	1	1	AREL1	20159	chr14:75131539:-	ZSWIM8	37137	chr10:75553346:+	ONLY_REF_SPLICE	YES	44	4	0.04	0.33	0.0097	0.0097	AREL1->apoptosis_resistant_E3_ubiquitin_protein_ligase_1,chr14:75120140-75179818:-,ZSWIM8->chr10:75545340-75561551:+,zinc_finger_SWIM-type_containing_8	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.33	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRAF--TMEM178B	1	1	BRAF	14964	chr7:140476712:-	TMEM178B	34216	chr7:140912391:+	ONLY_REF_SPLICE	NO	26	0	0.07	1	0.0097	0.0097	BRAF->ArcherDX_panel,B-Raf_proto-oncogene,_serine/threonine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:140419127-140624564:-,TMEM178B->chr7:140774032-141180180:+,transmembrane_protein_178B	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000519
HS616T_FIBROBLAST	CTGF--ACTB	5	0	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS616T_FIBROBLAST	1	1	0.0563	TRUE	0	0	0	9	0	TRUE	ACH-000063
HS616T_FIBROBLAST	CTB-113P19.1--FTL	4	2	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0451	0.0225	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	HS616T_FIBROBLAST	0.55	1	0.0676	TRUE	0	2	0	13	2	TRUE	ACH-000063
HS616T_FIBROBLAST	STK3--RP11-410L14.2	4	0	STK3	12201	chr8:99786967:-	RP11-410L14.2	40104	chr8:100009194:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0451	0	LOCAL_REARRANGEMENT:-:[53936],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,RP11-410L14.2->chr8:100008991-100025272:-	HS616T_FIBROBLAST	1	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000063
HS616T_FIBROBLAST	CALD1--EXOC4	3	0	CALD1	6757	chr7:134528722:+	EXOC4	66854	chr7:133682245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},CALD1->caldesmon_1,chr7:134429003-134655479:+,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	HS616T_FIBROBLAST	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000063
HS616T_FIBROBLAST	COL1A2--COL6A1	3	0	COL1A2	19624	chr7:94047143:+	COL6A1	44309	chr21:47411924:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS616T_FIBROBLAST	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000063
HS616T_FIBROBLAST	RABAC1--LGALS1	3	0	RABAC1	3339	chr19:42461204:-	LGALS1	6767	chr22:38071671:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	RABAC1->Rab_acceptor_1,chr19:42460833-42463542:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HS616T_FIBROBLAST	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000063
KG1C_CENTRAL_NERVOUS_SYSTEM	SERPINE1--BOD1L1	56	0	SERPINE1	9423	chr7:100781340:+	BOD1L1	27424	chr4:13606456:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5922	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,BOD1L1->biorientation_of_chromosomes_in_cell_division_1_like_1,chr4:13570362-13629347:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.5922	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	AGAP1--PARD3B	20	4	AGAP1	26208	chr2:236957925:+	PARD3B	62463	chr2:206165254:+	ONLY_REF_SPLICE	YES	6	1	0.8	0.96	0.2115	0.0423	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta	KG1C_CENTRAL_NERVOUS_SYSTEM	0.8	0.96	0.2538	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	C7orf10--RALA	17	2	C7orf10	1145	chr7:40174719:+	RALA	34781	chr7:39745722:+	ONLY_REF_SPLICE	YES	5	96	0.79	0.17	0.1798	0.0211	C7orf10->chr7:40174575-40900362:+,RALA->Oncogene{Bushman},chr7:39663082-39747723:+,v-ral_simian_leukemia_viral_oncogene_homolog_A_(ras_related)	KG1C_CENTRAL_NERVOUS_SYSTEM	0.17	0.79	0.2009	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	ZBTB20--TIGIT	14	5	ZBTB20	6598	chr3:114693213:-	TIGIT	50500	chr3:114014392:+	ONLY_REF_SPLICE	YES	3	4	0.86	0.83	0.148	0.0529	LOCAL_INVERSION:-:+:[27806],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,TIGIT->T-cell_immunoreceptor_with_Ig_and_ITIM_domains,chr3:113995760-114029135:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.83	0.86	0.2009	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	IL20RB--LPP	8	3	IL20RB	2403	chr3:136677043:+	LPP	46811	chr3:188583988:+	ONLY_REF_SPLICE	YES	1	14	0.92	0.44	0.0846	0.0317	IL20RB->chr3:136665072-136729927:+,interleukin_20_receptor_subunit_beta,LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.44	0.92	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	ZBTB20--TIGIT	7	5	ZBTB20	6598	chr3:114693213:-	TIGIT	48955	chr3:114012847:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.074	0.0529	LOCAL_INVERSION:-:+:[27806],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,TIGIT->T-cell_immunoreceptor_with_Ig_and_ITIM_domains,chr3:113995760-114029135:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.1269	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	BBX--LINC00882	6	3	BBX	4463	chr3:107245245:+	LINC00882	54285	chr3:106646841:-	ONLY_REF_SPLICE	YES	17	0	0.35	1	0.0634	0.0317	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,LINC00882->chr3:106555658-106959488:-,long_intergenic_non-protein_coding_RNA_882	KG1C_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PPM1A--RP11-305B6.3	6	0	PPM1A	2705	chr14:60716395:+	RP11-305B6.3	27851	chr14:44518710:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0	PPM1A->chr14:60712470-60765805:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1A,RP11-305B6.3->chr14:44464984-44853748:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	CPNE4--ATP2B2	5	0	CPNE4	7378	chr3:131753411:-	ATP2B2	36917	chr3:10491546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0529	0	CPNE4->chr3:131252399-132004254:-,copine_4,ATP2B2->ATPase_plasma_membrane_Ca2+_transporting_2,chr3:10365707-10749716:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0529	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	IL20RB--LPP	3	6	IL20RB	5990	chr3:136701192:+	LPP	46811	chr3:188583988:+	ONLY_REF_SPLICE	YES	3	14	0.75	0.39	0.0317	0.0634	IL20RB->chr3:136665072-136729927:+,interleukin_20_receptor_subunit_beta,LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.39	0.75	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	SH3PXD2B--FBXW11	4	1	SH3PXD2B	4480	chr5:171821567:-	FBXW11	30909	chr5:171341409:-	ONLY_REF_SPLICE	YES	20	29	0.2	0.15	0.0423	0.0106	SH3PXD2B->SH3_and_PX_domains_2B,chr5:171752185-171881527:-,FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-	KG1C_CENTRAL_NERVOUS_SYSTEM	0.15	0.2	0.0529	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PELI2--FERMT2	4	0	PELI2	1924	chr14:56585455:+	FERMT2	22402	chr14:53360145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	PELI2->chr14:56584532-56768244:+,pellino_E3_ubiquitin_protein_ligase_family_member_2,FERMT2->chr14:53323986-53419153:-,fermitin_family_member_2	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RFTN1--RP11-362A9.3	4	0	RFTN1	15846	chr3:16399439:-	RP11-362A9.3	25819	chr3:152175962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,RP11-362A9.3->chr3:152175548-152214602:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	BBX--LINC00882	3	3	BBX	4463	chr3:107245245:+	LINC00882	53243	chr3:106758963:-	ONLY_REF_SPLICE	YES	17	1	0.26	0.86	0.0317	0.0317	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,LINC00882->chr3:106555658-106959488:-,long_intergenic_non-protein_coding_RNA_882	KG1C_CENTRAL_NERVOUS_SYSTEM	0.26	0.86	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PARD3B--PLCL1	3	1	PARD3B	4816	chr2:205830046:+	PLCL1	56603	chr2:199220019:+	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0317	0.0106	PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta,PLCL1->Oncogene{Bushman},chr2:198669426-199437305:+,phospholipase_C_like_1	KG1C_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	ZBTB20--TIGIT	2	5	ZBTB20	6598	chr3:114693213:-	TIGIT	48262	chr3:114012154:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0211	0.0529	LOCAL_INVERSION:-:+:[27806],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,TIGIT->T-cell_immunoreceptor_with_Ig_and_ITIM_domains,chr3:113995760-114029135:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.7	1	0.074	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	FLYWCH1--FAM127A	3	0	FLYWCH1	13112	chr16:2986332:+	FAM127A	24685	chrX:134166942:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	FLYWCH1->FLYWCH-type_zinc_finger_1,chr16:2961938-3001209:+,FAM127A->chrX:134166333-134167576:+,family_with_sequence_similarity_127_member_A	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	SERPINE1--CD151	3	0	SERPINE1	1101	chr7:100770470:+	CD151	13780	chr11:832992:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	SH3PXD2B--FBXW11	2	1	SH3PXD2B	4480	chr5:171821567:-	FBXW11	31972	chr5:171337801:-	ONLY_REF_SPLICE	YES	20	21	0.13	0.12	0.0211	0.0106	SH3PXD2B->SH3_and_PX_domains_2B,chr5:171752185-171881527:-,FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-	KG1C_CENTRAL_NERVOUS_SYSTEM	0.12	0.13	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	ABI1--FNTA	2	0	ABI1	1341	chr10:27149676:-	FNTA	23442	chr8:42914235:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,FNTA->chr8:42889337-42940931:+,farnesyltransferase,_CAAX_box,_alpha	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	AL132709.5--ARMC7	2	0	AL132709.5	8473	chr14:101415933:+	ARMC7	23893	chr17:73124772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	AL132709.5->chr14:101403738-101426536:+,ARMC7->armadillo_repeat_containing_7,chr17:73106047-73126360:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	APPL1--NFYB	2	0	APPL1	1201	chr3:57261965:+	NFYB	30436	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	APPL1->adaptor_protein,_phosphotyrosine_interacting_with_PH_domain_and_leucine_zipper_1,chr3:57261765-57307496:+,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	CTNNA1--KDM3B	2	0	CTNNA1	17161	chr5:138163407:+	KDM3B	42441	chr5:137708363:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,KDM3B->chr5:137688285-137772717:+,lysine_demethylase_3B	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	1	0	1	1	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	DFNB31--CTNNAL1	2	0	DFNB31	5921	chr9:117228547:-	CTNNAL1	19858	chr9:111761536:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	DFNB31->chr9:117164360-117267730:-,deafness,_autosomal_recessive_31,CTNNAL1->catenin_alpha_like_1,chr9:111704851-111775809:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	EGFR--DBNL	2	0	EGFR	19318	chr7:55233130:+	DBNL	46839	chr7:44089824:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,DBNL->chr7:44084239-44109055:+,drebrin_like	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	FAM129B--ENG	2	0	FAM129B	11445	chr9:130272425:-	ENG	28102	chr9:130581111:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	FAM129B->chr9:130267618-130341268:-,family_with_sequence_similarity_129_member_B,ENG->chr9:130577291-130617035:-,endoglin	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	FASTKD5--SYNDIG1	2	0	FASTKD5	1132	chr20:3140412:-	SYNDIG1	9430	chr20:24523656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	FASTKD5->FAST_kinase_domains_5,chr20:3127165-3140543:-,SYNDIG1->chr20:24449835-24647252:+,synapse_differentiation_inducing_1	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	FBXO16--HAT1	2	0	FBXO16	9368	chr8:28304688:-	HAT1	27096	chr2:172782047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	FBXO16->F-box_protein_16,chr8:28205804-28347835:-,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	KNDC1--ARIH1	2	0	KNDC1	4322	chr10:134981816:+	ARIH1	38944	chr15:72847612:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	KNDC1->chr10:134973951-135039916:+,kinase_non-catalytic_C-lobe_domain_(KIND)_containing_1,ARIH1->ariadne_RBR_E3_ubiquitin_protein_ligase_1,chr15:72766667-72879692:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	LYSMD3--NAPEPLD	2	0	LYSMD3	3487	chr5:89820852:-	NAPEPLD	14939	chr7:102769239:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LYSMD3->LysM_domain_containing_3,chr5:89811428-89825401:-,NAPEPLD->N-acyl_phosphatidylethanolamine_phospholipase_D,chr7:102740223-102790007:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	MAP4K5--RSRC2	2	0	MAP4K5	33360	chr14:50889839:-	RSRC2	52988	chr12:122991470:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	MAP4K5->chr14:50885219-51027844:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_5,RSRC2->arginine/serine-rich_coiled-coil_2,chr12:122989190-123011547:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	NCOR1--PAFAH1B1	2	0	NCOR1	16332	chr17:16046920:-	PAFAH1B1	75705	chr17:2579799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1,PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PAPD4--RASGRF2	2	0	PAPD4	1956	chr5:78908898:+	RASGRF2	47366	chr5:80475994:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PAPD4->PAP_associated_domain_containing_4,chr5:78907943-78982471:+,RASGRF2->Oncogene{Bushman},Ras_protein_specific_guanine_nucleotide_releasing_factor_2,chr5:80256491-80525975:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PARD3B--PLCL1	2	0	PARD3B	4816	chr2:205830046:+	PLCL1	57716	chr2:199252577:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta,PLCL1->Oncogene{Bushman},chr2:198669426-199437305:+,phospholipase_C_like_1	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PLXNA4--EXOC4	2	0	PLXNA4	7628	chr7:132174051:-	EXOC4	64190	chr7:133160082:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx&tcga_normals:1/3694=0.03%,PLXNA4->chr7:131808091-132333447:-,plexin_A4,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PPCDC--TMEM181	2	0	PPCDC	2354	chr15:75320794:+	TMEM181	20783	chr6:159026299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PPCDC->chr15:75315896-75409803:+,phosphopantothenoylcysteine_decarboxylase,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PPP1R12C--WBSCR22	2	0	PPP1R12C	7638	chr19:55614777:-	WBSCR22	20968	chr7:73100966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PREX1--ARFGEF2	2	0	PREX1	1242	chr20:47444179:-	ARFGEF2	45847	chr20:47557736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[94007],PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PRKDC--UBE2V2	2	0	PRKDC	1211	chr8:48872533:-	UBE2V2	92399	chr8:48955593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[48217],PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RCC1--ADK	2	0	RCC1	2175	chr1:28834672:+	ADK	30627	chr10:76349040:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ADK->adenosine_kinase,chr10:75910960-76469061:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RP11-679C8.2--DYNLRB1	2	0	RP11-679C8.2	6018	chr4:121071776:+	DYNLRB1	16478	chr20:33114073:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RP11-679C8.2->chr4:120988113-121337921:+,DYNLRB1->chr20:33104214-33128762:+,dynein_light_chain_roadblock-type_1	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	SEPT2--GDI2	2	0	SEPT2	9377	chr2:242274627:+	GDI2	33348	chr10:5815904:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	SKIV2L2--TYRP1	2	0	SKIV2L2	1388	chr5:54603975:+	TYRP1	37185	chr9:12693912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+,TYRP1->chr9:12685439-12710290:+,tyrosinase_related_protein_1	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	SYNJ2--TAB2	2	0	SYNJ2	2320	chr6:158438322:+	TAB2	51557	chr6:149718740:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SYNJ2->chr6:158402888-158520208:+,synaptojanin_2,TAB2->TGF-beta_activated_kinase_1/MAP3K7_binding_protein_2,chr6:149539777-149732749:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	ZBTB20--TIGIT	1	1	ZBTB20	6598	chr3:114693213:-	TIGIT	51976	chr3:114018444:+	ONLY_REF_SPLICE	YES	3	8	0.4	0.2	0.0106	0.0106	LOCAL_INVERSION:-:+:[27806],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,TIGIT->T-cell_immunoreceptor_with_Ig_and_ITIM_domains,chr3:113995760-114029135:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.2	0.4	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000126
HCC827GR5_LUNG	RASSF3--FRG1B	825	119	RASSF3	1231	chr12:65004523:+	FRG1B	15672	chr20:29623129:+	ONLY_REF_SPLICE	YES	21	162	0.98	0.85	9.7504	1.4064	RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+,FRG1B->chr20:29611857-29634010:+	HCC827GR5_LUNG	0.85	0.98	11.1568	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	KIAA1429--RP11-586K2.1	262	170	KIAA1429	2261	chr8:95556055:-	RP11-586K2.1	37940	chr8:89712521:+	ONLY_REF_SPLICE	YES	48	0	0.9	1	3.0965	2.0092	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827GR5_LUNG	0.9	1	5.1057	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	TBK1--RP11-338E21.1	126	59	TBK1	6330	chr12:64860862:+	RP11-338E21.1	24507	chr12:64992996:-	ONLY_REF_SPLICE	YES	797	0	0.19	1	1.4892	0.6973	LOCAL_INVERSION:+:-:[96970],TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,RP11-338E21.1->chr12:64992858-65003239:-	HCC827GR5_LUNG	0.19	1	2.1865	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	WASL--NDUFA5	107	69	WASL	1450	chr7:123388672:-	NDUFA5	23020	chr7:123190640:-	ONLY_REF_SPLICE	YES	198	67	0.47	0.72	1.2646	0.8155	WASL->Wiskott-Aldrich_syndrome_like,chr7:123321989-123389121:-,NDUFA5->NADH:ubiquinone_oxidoreductase_subunit_A5,chr7:123177051-123198309:-	HCC827GR5_LUNG	0.47	0.72	2.0801	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	ARPC1B--MDFIC	112	1	ARPC1B	1533	chr7:98972404:+	MDFIC	21704	chr7:114619561:+	ONLY_REF_SPLICE	YES	32	88	0.78	0.56	1.3237	0.0118	ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MDFIC->MyoD_family_inhibitor_domain_containing,chr7:114562209-114659256:+	HCC827GR5_LUNG	0.56	0.78	1.3355	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	ST3GAL1--RP11-103H7.2	90	60	ST3GAL1	12845	chr8:134487962:-	RP11-103H7.2	27477	chr8:127512122:+	ONLY_REF_SPLICE	YES	10	0	0.94	1	1.0637	0.7091	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,RP11-103H7.2->chr8:127510394-127512548:+	HCC827GR5_LUNG	0.94	1	1.7728	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	ZSWIM4--RFX1	35	37	ZSWIM4	6454	chr19:13923978:+	RFX1	24652	chr19:14094407:-	ONLY_REF_SPLICE	YES	32	14	0.69	0.84	0.4137	0.4373	{Klijn_CCL:Lung=1},ZSWIM4->chr19:13906274-13943044:+,zinc_finger_SWIM-type_containing_4,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	HCC827GR5_LUNG	0.69	0.84	0.851	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	MIB1--DSG1	30	18	MIB1	8339	chr18:19359646:+	DSG1	44935	chr18:28918278:+	ONLY_REF_SPLICE	YES	38	0	0.56	1	0.3546	0.2127	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,DSG1->chr18:28898052-28936992:+,desmoglein_1	HCC827GR5_LUNG	0.56	1	0.5673	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	LRRC6--PMP2	22	23	LRRC6	16213	chr8:133590655:-	PMP2	21833	chr8:82357224:-	ONLY_REF_SPLICE	YES	604	0	0.07	1	0.26	0.2718	LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6,PMP2->chr8:82352561-82359758:-,peripheral_myelin_protein_2	HCC827GR5_LUNG	0.07	1	0.5318	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	TBK1--RP11-338E21.1	13	59	TBK1	6330	chr12:64860862:+	RP11-338E21.1	24489	chr12:64993014:-	INCL_NON_REF_SPLICE	YES	797	0	0.08	1	0.1536	0.6973	LOCAL_INVERSION:+:-:[96970],TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,RP11-338E21.1->chr12:64992858-65003239:-	HCC827GR5_LUNG	0.08	1	0.8509	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	KIAA1429--RP11-586K2.1	8	75	KIAA1429	2261	chr8:95556055:-	RP11-586K2.1	40396	chr8:89747954:+	ONLY_REF_SPLICE	YES	48	0	0.63	1	0.0945	0.8864	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827GR5_LUNG	0.63	1	0.9809	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	KIAA1429--RP11-586K2.1	3	85	KIAA1429	2261	chr8:95556055:-	RP11-586K2.1	38998	chr8:89721559:+	ONLY_REF_SPLICE	YES	48	0	0.65	1	0.0355	1.0046	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827GR5_LUNG	0.65	1	1.0401	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	JPH1--NCOA2	22	5	JPH1	3180	chr8:75227096:-	NCOA2	15431	chr8:71209035:-	ONLY_REF_SPLICE	YES	70	11	0.28	0.71	0.26	0.0591	JPH1->chr8:75146935-75233563:-,junctophilin_1,NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2	HCC827GR5_LUNG	0.28	0.71	0.3191	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	WASL--NDUFA5	4	72	WASL	1450	chr7:123388672:-	NDUFA5	18276	chr7:123197502:-	ONLY_REF_SPLICE	YES	198	37	0.28	0.67	0.0473	0.8509	WASL->Wiskott-Aldrich_syndrome_like,chr7:123321989-123389121:-,NDUFA5->NADH:ubiquinone_oxidoreductase_subunit_A5,chr7:123177051-123198309:-	HCC827GR5_LUNG	0.28	0.67	0.8982	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	TMEM9B--TMEM41B	19	7	TMEM9B	7711	chr11:8969849:-	TMEM41B	14298	chr11:9316934:-	INCL_NON_REF_SPLICE	YES	127	120	0.17	0.18	0.2246	0.0827	TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,TMEM41B->chr11:9302201-9336327:-,transmembrane_protein_41B	HCC827GR5_LUNG	0.17	0.18	0.3073	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	WASL--NDUFA5	3	69	WASL	1450	chr7:123388672:-	NDUFA5	22030	chr7:123191630:-	ONLY_REF_SPLICE	YES	198	58	0.27	0.55	0.0355	0.8155	WASL->Wiskott-Aldrich_syndrome_like,chr7:123321989-123389121:-,NDUFA5->NADH:ubiquinone_oxidoreductase_subunit_A5,chr7:123177051-123198309:-	HCC827GR5_LUNG	0.27	0.55	0.851	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	TPD52--PCAT1	19	2	TPD52	6214	chr8:81083660:-	PCAT1	30419	chr8:127889917:+	ONLY_REF_SPLICE	YES	412	0	0.05	1	0.2246	0.0236	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	HCC827GR5_LUNG	0.05	1	0.2482	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	IGSF3--GGT1	16	11	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	75	168	0.26	0.14	0.1891	0.13	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	HCC827GR5_LUNG	0.14	0.26	0.3191	TRUE	1	1	0	8	1	TRUE	ACH-000029
HCC827GR5_LUNG	LRRC6--PMP2	14	15	LRRC6	15104	chr8:133595941:-	PMP2	21833	chr8:82357224:-	ONLY_REF_SPLICE	YES	633	0	0.04	1	0.1655	0.1773	LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6,PMP2->chr8:82352561-82359758:-,peripheral_myelin_protein_2	HCC827GR5_LUNG	0.04	1	0.3428	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	WASL--NDUFA5	4	33	WASL	1450	chr7:123388672:-	NDUFA5	25643	chr7:123185730:-	ONLY_REF_SPLICE	YES	198	649	0.16	0.05	0.0473	0.39	WASL->Wiskott-Aldrich_syndrome_like,chr7:123321989-123389121:-,NDUFA5->NADH:ubiquinone_oxidoreductase_subunit_A5,chr7:123177051-123198309:-	HCC827GR5_LUNG	0.05	0.16	0.4373	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	ARFGEF1--SGK3	9	12	ARFGEF1	22076	chr8:68150578:-	SGK3	53454	chr8:67705851:+	ONLY_REF_SPLICE	YES	254	4	0.08	0.84	0.1064	0.1418	ARFGEF1->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_1,chr8:68085747-68255912:-,SGK3->chr8:67624653-67774257:+,serum/glucocorticoid_regulated_kinase_family_member_3	HCC827GR5_LUNG	0.08	0.84	0.2482	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	TRRAP--LMOD2	6	21	TRRAP	40370	chr7:98554156:+	LMOD2	75567	chr7:123301914:+	ONLY_REF_SPLICE	YES	66	0	0.29	1	0.0709	0.2482	TRRAP->chr7:98475556-98610866:+,transformation/transcription_domain_associated_protein,LMOD2->chr7:123295861-123304344:+,leiomodin_2	HCC827GR5_LUNG	0.29	1	0.3191	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	RASSF3--FRG1B	2	36	RASSF3	1231	chr12:65004523:+	FRG1B	17636	chr20:29625873:+	ONLY_REF_SPLICE	YES	21	223	0.64	0.15	0.0236	0.4255	RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+,FRG1B->chr20:29611857-29634010:+	HCC827GR5_LUNG	0.15	0.64	0.4491	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	KB-1047C11.2--SULF1	10	0	KB-1047C11.2	2912	chr8:96281118:+	SULF1	38101	chr8:70539445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1182	0	KB-1047C11.2->chr8:96216684-96822364:+,SULF1->chr8:70378859-70573150:+,sulfatase_1	HCC827GR5_LUNG	1	1	0.1182	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	ICAM5--ANO8	5	14	ICAM5	3886	chr19:10403542:+	ANO8	11828	chr19:17444609:-	ONLY_REF_SPLICE	YES	70	41	0.21	0.32	0.0591	0.1655	{Klijn_CCL:Lung=1},ICAM5->Oncogene{Bushman},chr19:10400657-10407454:+,intercellular_adhesion_molecule_5,ANO8->anoctamin_8,chr19:17434032-17445638:-	HCC827GR5_LUNG	0.21	0.32	0.2246	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	ZSWIM4--RFX1	4	17	ZSWIM4	5286	chr19:13920034:+	RFX1	24652	chr19:14094407:-	ONLY_REF_SPLICE	YES	123	14	0.15	0.6	0.0473	0.2009	{Klijn_CCL:Lung=1},ZSWIM4->chr19:13906274-13943044:+,zinc_finger_SWIM-type_containing_4,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	HCC827GR5_LUNG	0.15	0.6	0.2482	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	FCHO1--ABCA4	4	16	FCHO1	10532	chr19:17877619:+	ABCA4	56572	chr1:94505683:-	ONLY_REF_SPLICE	YES	10	1	0.67	0.95	0.0473	0.1891	FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	HCC827GR5_LUNG	0.67	0.95	0.2364	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	KIAA1429--RP11-586K2.1	5	1	KIAA1429	1145	chr8:95565613:-	RP11-586K2.1	37940	chr8:89712521:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0591	0.0118	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827GR5_LUNG	1	1	0.0709	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	RP11-89K10.1--KCNB2	3	3	RP11-89K10.1	2156	chr8:127601535:+	KCNB2	16571	chr8:73848170:+	ONLY_REF_SPLICE	YES	22	0	0.21	1	0.0355	0.0355	RP11-89K10.1->chr8:127570120-127725660:+,KCNB2->chr8:73449626-73850584:+,potassium_voltage-gated_channel_subfamily_B_member_2	HCC827GR5_LUNG	0.21	1	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	ARPC1B--MDFIC	3	0	ARPC1B	1533	chr7:98972404:+	MDFIC	24354	chr7:114655742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MDFIC->MyoD_family_inhibitor_domain_containing,chr7:114562209-114659256:+	HCC827GR5_LUNG	1	1	0.0355	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	PRMT1--KRT18	3	0	PRMT1	12119	chr19:50191485:+	KRT18	16258	chr12:53342992:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	PRMT1->chr19:50179043-50192286:+,protein_arginine_methyltransferase_1,KRT18->chr12:53342655-53346685:+,keratin_18	HCC827GR5_LUNG	1	1	0.0355	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	AC002066.1--SEPT9	2	0	AC002066.1	1112	chr7:116139408:-	SEPT9	44221	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AC002066.1->chr7:115878314-116139519:-,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	AFAP1-AS1--DGKG	2	0	AFAP1-AS1	1070	chr4:7755886:+	DGKG	48233	chr3:185823731:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AFAP1-AS1->AFAP1_antisense_RNA_1,chr4:7755817-7780655:+,DGKG->chr3:185823457-186080026:-,diacylglycerol_kinase_gamma	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	C1orf63--RP4-799D16.1	2	0	C1orf63	1145	chr1:25664560:-	RP4-799D16.1	23561	chr1:25370327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,RP4-799D16.1->chr1:25370198-25439611:-	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	C1orf63--RP4-799D16.1	2	0	C1orf63	2174	chr1:25663531:-	RP4-799D16.1	23561	chr1:25370327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,RP4-799D16.1->chr1:25370198-25439611:-	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	C1orf63--RP4-799D16.1	2	0	C1orf63	8720	chr1:25594231:-	RP4-799D16.1	23561	chr1:25370327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,RP4-799D16.1->chr1:25370198-25439611:-	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	CTC-301O7.4--UBAP2	2	0	CTC-301O7.4	3141	chr19:49834874:-	UBAP2	27410	chr9:33941860:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	CTC-301O7.4->chr19:49834874-49843865:-,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	IMPAD1--SDCBP	2	0	IMPAD1	1646	chr8:57905758:-	SDCBP	20315	chr8:59477578:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	IMPAD1->chr8:57870492-57906403:-,inositol_monophosphatase_domain_containing_1,SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	ITCH--ASIP	2	0	ITCH	2192	chr20:32957276:+	ASIP	35434	chr20:32848171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUAD:1|LUSC:1|OV:1],LOCAL_REARRANGEMENT:+:[93891],ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	5	1	1	5	TRUE	ACH-000029
HCC827GR5_LUNG	NRD1--PIP4K2C	2	0	NRD1	32362	chr1:52256205:-	PIP4K2C	37995	chr12:57987808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NRD1->chr1:52254863-52344477:-,PIP4K2C->chr12:57984957-57997198:+,phosphatidylinositol-5-phosphate_4-kinase_type_2_gamma	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	RHBDL2--FCHO1	1	4	RHBDL2	9975	chr1:39358836:-	FCHO1	26449	chr19:17881234:+	ONLY_REF_SPLICE	YES	46	10	0.1	0.33	0.0118	0.0473	RHBDL2->chr1:39351479-39407471:-,rhomboid,_veinlet-like_2_(Drosophila),FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	HCC827GR5_LUNG	0.1	0.33	0.0591	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	RP11-115K3.1--MRPL45	1	2	RP11-115K3.1	1199	chr17:36105404:+	MRPL45	7845	chr17:36454415:+	ONLY_REF_SPLICE	YES	20	19	0.13	0.14	0.0118	0.0236	RP11-115K3.1->chr17:36105206-36108563:+,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	HCC827GR5_LUNG	0.13	0.14	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	AC131097.3--MAP3K13	1	1	AC131097.3	2273	chr2:242824786:+	MAP3K13	18287	chr3:185146285:+	ONLY_REF_SPLICE	YES	1	9	0.67	0.18	0.0118	0.0118	AC131097.3->chr2:242823514-243020873:+,MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13	HCC827GR5_LUNG	0.18	0.67	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC1438_LUNG	TIMM23B--RP11-175I17.2	71	22	TIMM23B	6950	chr10:51387763:+	RP11-175I17.2	16572	chr10:46358562:-	ONLY_REF_SPLICE	YES	0	12	1	0.89	0.6803	0.2108	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,RP11-175I17.2->chr10:46349541-46411619:-	HCC1438_LUNG	0.89	1	0.8911	TRUE	0	16	0	2	16	TRUE	ACH-000891
HCC1438_LUNG	PRAME--RFPL1	48	11	PRAME	9047	chr22:22892148:-	RFPL1	15573	chr22:29837531:+	ONLY_REF_SPLICE	YES	405	4	0.13	0.94	0.4599	0.1054	PRAME->chr22:22890123-22901768:-,preferentially_expressed_antigen_in_melanoma,RFPL1->chr22:29834572-29838444:+,ret_finger_protein_like_1	HCC1438_LUNG	0.13	0.94	0.5653	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	KDM5B--RP11-335O13.8	38	11	KDM5B	2369	chr1:202777230:-	RP11-335O13.8	38994	chr1:203119180:-	ONLY_REF_SPLICE	YES	36	3	0.58	0.94	0.3641	0.1054	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,RP11-335O13.8->chr1:203113092-203122028:-	HCC1438_LUNG	0.58	0.94	0.4695	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	PKM--ALDOA	14	0	PKM	10614	chr15:72502054:-	ALDOA	31408	chr16:30078920:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1341	0	GTEx&tcga_normals:1/3694=0.03%,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	HCC1438_LUNG	1	1	0.1341	TRUE	0	0	0	2	0	TRUE	ACH-000891
HCC1438_LUNG	KDM5B--RP11-335O13.8	9	13	KDM5B	2369	chr1:202777230:-	RP11-335O13.8	37878	chr1:203121793:-	INCL_NON_REF_SPLICE	YES	36	1	0.38	0.96	0.0862	0.1246	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,RP11-335O13.8->chr1:203113092-203122028:-	HCC1438_LUNG	0.38	0.96	0.2108	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	KDM5B--RP11-335O13.8	4	13	KDM5B	2369	chr1:202777230:-	RP11-335O13.8	37874	chr1:203121797:-	INCL_NON_REF_SPLICE	YES	36	1	0.32	0.94	0.0383	0.1246	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,RP11-335O13.8->chr1:203113092-203122028:-	HCC1438_LUNG	0.32	0.94	0.1629	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	PPP1R12A--IL7	6	0	PPP1R12A	27543	chr12:80180154:-	IL7	43163	chr8:79652317:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0575	0	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,IL7->Oncogene{Bushman},chr8:79587978-79717758:-,interleukin_7	HCC1438_LUNG	1	1	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	TMCC1--TMCC1-AS1	5	1	TMCC1	3255	chr3:129599152:-	TMCC1-AS1	27480	chr3:129620550:+	ONLY_REF_SPLICE	YES	25	5	0.19	0.55	0.0479	0.0096	LOCAL_INVERSION:-:+:[295],TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1,TMCC1-AS1->TMCC1_antisense_RNA_1_(head_to_head),chr3:129612714-129637418:+	HCC1438_LUNG	0.19	0.55	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	RP11-722M1.1--RP11-431M7.2	4	4	RP11-722M1.1	7110	chr4:36500049:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	8	0	0.5	1	0.0383	0.0383	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	HCC1438_LUNG	0.5	1	0.0766	TRUE	0	1	0	4	1	TRUE	ACH-000891
HCC1438_LUNG	TTC28--GNB1L	4	2	TTC28	2523	chr22:29025540:-	GNB1L	45514	chr22:19789739:-	ONLY_REF_SPLICE	YES	27	35	0.18	0.15	0.0383	0.0192	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	HCC1438_LUNG	0.15	0.18	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	PTPRG--FRMD8	4	0	PTPRG	1804	chr3:61548046:+	FRMD8	56760	chr11:65178713:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0383	0	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	HCC1438_LUNG	1	1	0.0383	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	TTC28--CTA-929C8.7	4	0	TTC28	2523	chr22:29025540:-	CTA-929C8.7	41997	chr22:27703526:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0383	0	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,CTA-929C8.7->chr22:27703444-27714499:-	HCC1438_LUNG	1	1	0.0383	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	RP11-722M1.1--RP11-431M7.2	2	3	RP11-722M1.1	4366	chr4:36584279:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.0192	0.0287	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	HCC1438_LUNG	0.31	1	0.0479	TRUE	0	1	0	4	1	TRUE	ACH-000891
HCC1438_LUNG	RP11-114H21.2--CTB-1I21.1	1	5	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0096	0.0479	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	HCC1438_LUNG	0.26	1	0.0575	TRUE	0	2	0	12	2	TRUE	ACH-000891
HCC1438_LUNG	CECR5--CRYBB1	2	0	CECR5	5198	chr22:17629338:-	CRYBB1	18540	chr22:27003985:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	CECR5->Oncogene{Bushman},cat_eye_syndrome_chromosome_region,_candidate_5,chr22:17618401-17646177:-,CRYBB1->chr22:26995242-27014052:-,crystallin_beta_B1	HCC1438_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	FPGS--TTC16	2	0	FPGS	10843	chr9:130575602:+	TTC16	17555	chr9:130482357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	LOCAL_REARRANGEMENT:+:[62997],FPGS->chr9:130556876-130576606:+,folylpolyglutamate_synthase,TTC16->chr9:130478345-130493879:+,tetratricopeptide_repeat_domain_16	HCC1438_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	PLOD2--PLSCR1	2	0	PLOD2	2347	chr3:145878668:-	PLSCR1	33461	chr3:146251337:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},PLOD2->chr3:145787227-145881440:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_2,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	HCC1438_LUNG	1	1	0.0192	TRUE	1	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	SUPT16H--PNP	2	0	SUPT16H	3385	chr14:21841497:-	PNP	31862	chr14:20944543:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	SUPT16H->SPT16_homolog,_facilitates_chromatin_remodeling_subunit,chr14:21819631-21852425:-,PNP->chr14:20937113-20945253:+,purine_nucleoside_phosphorylase	HCC1438_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	TTC28--GNB1L	2	0	TTC28	2523	chr22:29025540:-	GNB1L	46732	chr22:19776483:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	HCC1438_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	WDPCP--UGP2	2	0	WDPCP	6186	chr2:63815331:-	UGP2	50527	chr2:64109600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_INVERSION:-:+:[13097],WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,UGP2->UDP-glucose_pyrophosphorylase_2,chr2:64068074-64118696:+	HCC1438_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	ZNF787--CBX1	2	0	ZNF787	1109	chr19:56632541:-	CBX1	13933	chr17:46154403:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787,CBX1->chr17:46147414-46178883:-,chromobox_1	HCC1438_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	RP11-722M1.1--ARAP2	1	2	RP11-722M1.1	4366	chr4:36584279:-	ARAP2	13528	chr4:36231267:-	ONLY_REF_SPLICE	YES	11	5	0.21	0.38	0.0096	0.0192	RP11-722M1.1->chr4:36498159-36643522:-,ARAP2->ArfGAP_with_RhoGAP_domain,_ankyrin_repeat_and_PH_domain_2,Oncogene{Bushman},chr4:35949843-36246131:-	HCC1438_LUNG	0.21	0.38	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000891
TOV21G_OVARY	PRKCSH--GNAI1	12	0	PRKCSH	11401	chr19:11560500:+	GNAI1	24910	chr7:79842032:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1554	0	PRKCSH->chr19:11546109-11561783:+,protein_kinase_C_substrate_80K-H,GNAI1->G_protein_subunit_alpha_i1,chr7:79763271-79848718:+	TOV21G_OVARY	1	1	0.1554	TRUE	0	0	0	1	0	TRUE	ACH-000885
TOV21G_OVARY	AP000350.4--PKM	3	1	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	4	1	0.5	0.0388	0.0129	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	TOV21G_OVARY	0.5	1	0.0517	TRUE	0	0	0	14	0	TRUE	ACH-000885
TOV21G_OVARY	AP000350.4--PKM	3	1	AP000350.4	3774	chr22:24236611:-	PKM	7428	chr15:72523509:-	INCL_NON_REF_SPLICE	YES	0	5	1	0.44	0.0388	0.0129	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	TOV21G_OVARY	0.44	1	0.0517	TRUE	0	0	0	14	0	TRUE	ACH-000885
TOV21G_OVARY	RCC1--GNAS	2	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TOV21G_OVARY	1	1	0.0259	TRUE	0	3	0	13	2	TRUE	ACH-000885
UACC62_SKIN	MCM5--TOM1	7	1	MCM5	18815	chr22:35819334:+	TOM1	39639	chr22:35741718:+	ONLY_REF_SPLICE	YES	129	13	0.06	0.38	0.0811	0.0116	LOCAL_REARRANGEMENT:+:[52071],MCM5->Oncogene{Bushman},chr22:35796056-35821423:+,minichromosome_maintenance_complex_component_5,TOM1->chr22:35695268-35743985:+,target_of_myb1_membrane_trafficking_protein	UACC62_SKIN	0.06	0.38	0.0927	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	UST--SASH1	4	4	UST	5784	chr6:149285699:+	SASH1	26676	chr6:148808750:+	ONLY_REF_SPLICE	YES	10	9	0.44	0.47	0.0463	0.0463	UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	UACC62_SKIN	0.44	0.47	0.0926	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	CANX--IL13RA2	3	0	CANX	19887	chr5:179155764:+	IL13RA2	33996	chrX:114242557:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	CANX->calnexin,chr5:179105629-179157926:+,IL13RA2->chrX:114238538-114254540:-,interleukin_13_receptor_subunit_alpha_2	UACC62_SKIN	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	IGF2R--AIMP1	3	0	IGF2R	6108	chr6:160445701:+	AIMP1	61500	chr4:107268754:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,AIMP1->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_1,chr4:107236701-107270383:+	UACC62_SKIN	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	RPS11--CPNE1	3	0	RPS11	1921	chr19:50000542:+	CPNE1	13658	chr20:34219229:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx&tcga_normals:1/3694=0.03%,RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11,CPNE1->chr20:34213953-34252878:-,copine_1	UACC62_SKIN	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	SERBP1P5--SLC45A2	3	0	SERBP1P5	1320	chr4:79102881:-	SLC45A2	9127	chr5:33963887:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	SERBP1P5->SERPINE1_mRNA_binding_protein_1_pseudogene_5,chr4:79102020-79103200:-,SLC45A2->chr5:33944721-33984835:-,solute_carrier_family_45_member_2	UACC62_SKIN	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	SUMF2--CCT6A	3	0	SUMF2	3658	chr7:56140804:+	CCT6A	20326	chr7:56127962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[13],SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	UACC62_SKIN	1	1	0.0348	TRUE	0	5	0	5	0	TRUE	ACH-000425
UACC62_SKIN	BAHD1--C9orf3	2	0	BAHD1	2302	chr15:40733467:+	C9orf3	51306	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	C12orf76--SUZ12	2	0	C12orf76	1265	chr12:110511227:-	SUZ12	27052	chr17:30303540:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	C12orf76->chr12:110465872-110511491:-,chromosome_12_open_reading_frame_76,SUZ12->Oncogene{Bushman},SUZ12_polycomb_repressive_complex_2_subunit,chr17:30264037-30328064:+	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	CCND1--BRD3	2	0	CCND1	3386	chr11:69458759:+	BRD3	15603	chr9:136918712:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,BRD3->Oncogene{Bushman},bromodomain_containing_3,chr9:136895427-136933657:-	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	CDK5RAP1--PHF14	2	0	CDK5RAP1	2458	chr20:31984567:-	PHF14	45270	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CDK5RAP1->CDK5_regulatory_subunit_associated_protein_1,chr20:31946645-31989367:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	DLC1--FDFT1	2	0	DLC1	2057	chr8:13372111:-	FDFT1	40207	chr8:11667176:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	HES7--SP100	2	0	HES7	1050	chr17:8027361:-	SP100	11310	chr2:231307652:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	HES7->chr17:8023908-8027410:-,hes_family_bHLH_transcription_factor_7,SP100->SP100_nuclear_antigen,chr2:231280657-231408805:+	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	HMOX2--HMGB1	2	0	HMOX2	1158	chr16:4524848:+	HMGB1	21359	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	HMOX2->chr16:4524691-4560348:+,heme_oxygenase_2,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	INVS--ERP44	2	0	INVS	5175	chr9:102888831:+	ERP44	34311	chr9:102784508:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[216],INVS->chr9:102861538-103063282:+,inversin,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	UACC62_SKIN	1	1	0.0232	TRUE	0	1	0	1	0	TRUE	ACH-000425
UACC62_SKIN	INVS--ERP44	2	0	INVS	5175	chr9:102888831:+	ERP44	31082	chr9:102822454:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[216],INVS->chr9:102861538-103063282:+,inversin,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	3	0	TRUE	ACH-000425
UACC62_SKIN	MLXIP--PSMA7	2	0	MLXIP	7315	chr12:122616930:+	PSMA7	29015	chr20:60713346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	MLXIP->MLX_interacting_protein,chr12:122516628-122631894:+,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	RP11-206L10.11--CNKSR1	2	0	RP11-206L10.11	1168	chr1:763155:+	CNKSR1	23167	chr1:26508348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RP11-206L10.11->chr1:762988-794826:+,CNKSR1->chr1:26503894-26516377:+,connector_enhancer_of_kinase_suppressor_of_Ras_1	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	TERF2--CPSF3	2	0	TERF2	4649	chr16:69418483:-	CPSF3	37965	chr2:9611472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TERF2->chr16:69389464-69442474:-,telomeric_repeat_binding_factor_2,CPSF3->chr2:9563697-9613230:+,cleavage_and_polyadenylation_specific_factor_3	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	TPRG1--CCDC50	2	0	TPRG1	13156	chr3:188850486:+	CCDC50	39579	chr3:191074877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1,CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	TRIM14--BAG1	2	0	TRIM14	1231	chr9:100881264:-	BAG1	22469	chr9:33259031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TRIM14->chr9:100831557-100881494:-,tripartite_motif_containing_14,BAG1->BCL2_associated_athanogene_1,Oncogene{Bushman},chr9:33247818-33264761:-	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	TYR--SEC24D	2	0	TYR	3538	chr11:88924586:+	SEC24D	20774	chr4:119736881:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TYR->chr11:88910620-89028927:+,tyrosinase,SEC24D->SEC24_homolog_D,_COPII_coat_complex_component,chr4:119643978-119759838:-	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	WASH5P--DHX34	2	0	WASH5P	3129	chr19:66346:-	DHX34	13443	chr19:47856011:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	WASH5P->WAS_protein_family_homolog_5_pseudogene,chr19:60105-71626:-,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	XPO5--SAAL1	2	0	XPO5	20449	chr6:43514308:-	SAAL1	45940	chr11:18103050:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	XPO5->chr6:43490072-43543812:-,exportin_5,SAAL1->chr11:18091482-18127638:-,serum_amyloid_A_like_1	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	UACC62_SKIN	1	1	0.0232	TRUE	1	1	0	8	1	TRUE	ACH-000425
UACC62_SKIN	UST--SASH1	1	3	UST	5784	chr6:149285699:+	SASH1	27778	chr6:148835460:+	ONLY_REF_SPLICE	YES	10	8	0.29	0.33	0.0116	0.0348	UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	UACC62_SKIN	0.29	0.33	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	KIF26B--EFCAB2	1	1	KIF26B	11092	chr1:245704252:+	EFCAB2	37294	chr1:245165423:+	ONLY_REF_SPLICE	YES	1	1	0.67	0.67	0.0116	0.0116	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	UACC62_SKIN	0.67	0.67	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
SNU410_PANCREAS	FAM195B--ARHGDIA	10	1	FAM195B	1065	chr17:79791114:-	ARHGDIA	10767	chr17:79827833:-	ONLY_REF_SPLICE	YES	0	69	1	0.14	0.0942	0.0094	LOCAL_REARRANGEMENT:-:[34419],FAM195B->chr17:79780287-79791178:-,ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-	SNU410_PANCREAS	0.14	1	0.1036	TRUE	0	0	0	1	0	TRUE	ACH-000517
SNU410_PANCREAS	SLC20A2--MATR3	4	5	SLC20A2	1389	chr8:42396681:-	MATR3	28314	chr5:138611810:+	ONLY_REF_SPLICE	YES	69	2	0.12	0.82	0.0377	0.0471	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,MATR3->chr5:138609441-138667360:+,matrin_3	SNU410_PANCREAS	0.12	0.82	0.0848	TRUE	0	0	0	1	0	TRUE	ACH-000517
SNU410_PANCREAS	LARGE--P2RX6P	4	1	LARGE	12148	chr22:34022228:-	P2RX6P	41653	chr22:21389725:-	ONLY_REF_SPLICE	YES	7	1	0.42	0.83	0.0377	0.0094	LARGE->chr22:33558212-34318829:-,like-glycosyltransferase,P2RX6P->chr22:21389532-21399306:-,purinergic_receptor_P2X_6_pseudogene	SNU410_PANCREAS	0.42	0.83	0.0471	TRUE	0	0	0	1	0	TRUE	ACH-000517
SNU410_PANCREAS	RP3-414A15.10--ELMSAN1	3	0	RP3-414A15.10	1280	chr14:74100365:-	ELMSAN1	16369	chr14:74196688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	LOCAL_REARRANGEMENT:-:[81181],RP3-414A15.10->chr14:74083412-74100644:-,ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-	SNU410_PANCREAS	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000517
SNU410_PANCREAS	BSG--SLC16A3	2	0	BSG	2405	chr19:572701:+	SLC16A3	20725	chr17:80193859:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3	SNU410_PANCREAS	1	1	0.0188	TRUE	1	0	0	1	0	TRUE	ACH-000517
SNU410_PANCREAS	RP5-1158E12.3--CNPPD1	2	0	RP5-1158E12.3	3112	chrX:45708809:-	CNPPD1	8693	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	RP5-1158E12.3->chrX:45707328-45710920:-,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	SNU410_PANCREAS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000517
SNU410_PANCREAS	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	SNU410_PANCREAS	1	1	0.0188	TRUE	1	1	0	8	1	TRUE	ACH-000517
EFM19_BREAST	ZFYVE9--USP33	132	62	ZFYVE9	3242	chr1:52698948:+	USP33	48727	chr1:78178966:-	ONLY_REF_SPLICE	YES	4	21	0.98	0.9	1.4772	0.6938	{Klijn_CCL:Breast=1},ZFYVE9->chr1:52608046-52812358:+,zinc_finger_FYVE-type_containing_9,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	EFM19_BREAST	0.9	0.98	2.171	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	FBRS--ZNF771	107	66	FBRS	10080	chr16:30678943:+	ZNF771	23047	chr16:30440201:+	ONLY_REF_SPLICE	YES	269	0	0.39	1	1.1974	0.7386	FBRS->chr16:30669752-30682135:+,fibrosin,ZNF771->chr16:30418618-30440920:+,zinc_finger_protein_771	EFM19_BREAST	0.39	1	1.936	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	THRAP3--HCG20	77	0	THRAP3	1090	chr1:36690106:+	HCG20	22389	chr6:30756468:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.8617	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,HCG20->HLA_complex_group_20_(non-protein_coding),chr6:30734602-30760027:+	EFM19_BREAST	1	1	0.8617	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	KIRREL--ZFYVE9	66	42	KIRREL	1456	chr1:157963518:+	ZFYVE9	24499	chr1:52703160:+	ONLY_REF_SPLICE	YES	5	5	0.96	0.96	0.7386	0.47	{Klijn_CCL:Breast=1},KIRREL->chr1:157963063-158070052:+,kin_of_IRRE_like_(Drosophila),ZFYVE9->chr1:52608046-52812358:+,zinc_finger_FYVE-type_containing_9	EFM19_BREAST	0.96	0.96	1.2086	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	WBP1L--CCDC147-AS1	39	12	WBP1L	3446	chr10:104557852:+	CCDC147-AS1	13737	chr10:106111685:-	ONLY_REF_SPLICE	YES	58	0	0.47	1	0.4365	0.1343	WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+,CCDC147-AS1->chr10:106111349-106113333:-	EFM19_BREAST	0.47	1	0.5708	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	CRLF3--CHD9	34	14	CRLF3	3874	chr17:29130919:-	CHD9	32448	chr16:53256556:+	ONLY_REF_SPLICE	YES	21	215	0.7	0.18	0.3805	0.1567	CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3,CHD9->Oncogene{Bushman},chr16:53088945-53363062:+,chromodomain_helicase_DNA_binding_protein_9	EFM19_BREAST	0.18	0.7	0.5372	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	PPME1--AP000769.1	18	8	PPME1	5347	chr11:73933414:+	AP000769.1	25333	chr11:65233556:+	ONLY_REF_SPLICE	YES	37	0	0.41	1	0.2014	0.0895	PPME1->chr11:73882144-73965748:+,protein_phosphatase_methylesterase_1,AP000769.1->chr11:65222728-65234028:+	EFM19_BREAST	0.41	1	0.2909	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	PIGL--PIPOX	17	8	PIGL	14244	chr17:16230219:+	PIPOX	34742	chr17:27381563:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1902	0.0895	PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L,PIPOX->chr17:27277531-27384234:+,pipecolic_acid_and_sarcosine_oxidase	EFM19_BREAST	1	1	0.2797	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	SLX4IP--PI3	14	15	SLX4IP	2207	chr20:10438879:+	PI3	13907	chr20:43803482:+	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.1567	0.1679	SLX4IP->SLX4_interacting_protein,chr20:10415951-10617477:+,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	EFM19_BREAST	0.88	1	0.3246	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	NCOR1--AP005135.2	15	9	NCOR1	45500	chr17:15964715:-	AP005135.2	64376	chr11:134931841:-	ONLY_REF_SPLICE	YES	29	0	0.45	1	0.1679	0.1007	NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1,AP005135.2->chr11:134931675-134945793:-	EFM19_BREAST	0.45	1	0.2686	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	ZCCHC7--FAM219A	14	5	ZCCHC7	3765	chr9:37126939:+	FAM219A	23460	chr9:34405962:-	ONLY_REF_SPLICE	YES	54	7	0.26	0.73	0.1567	0.056	ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,FAM219A->chr9:34398182-34458568:-,family_with_sequence_similarity_219_member_A	EFM19_BREAST	0.26	0.73	0.2127	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	SLC30A9--ATP10D	9	13	SLC30A9	2454	chr4:42003797:+	ATP10D	28743	chr4:47514521:+	ONLY_REF_SPLICE	YES	98	2	0.18	0.92	0.1007	0.1455	SLC30A9->chr4:41992489-42092474:+,solute_carrier_family_30_member_9,ATP10D->ATPase_phospholipid_transporting_10D_(putative),chr4:47487305-47595503:+	EFM19_BREAST	0.18	0.92	0.2462	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	THRAP3--HCG20	11	2	THRAP3	2048	chr1:36691064:+	HCG20	22389	chr6:30756468:+	ONLY_REF_SPLICE	YES	10	0	0.57	1	0.1231	0.0224	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,HCG20->HLA_complex_group_20_(non-protein_coding),chr6:30734602-30760027:+	EFM19_BREAST	0.57	1	0.1455	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	WBP1L--ITPRIP	5	6	WBP1L	3446	chr10:104557852:+	ITPRIP	16066	chr10:106075822:-	ONLY_REF_SPLICE	YES	58	21	0.16	0.34	0.056	0.0671	WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+,ITPRIP->chr10:106071894-106098162:-,inositol_1,4,5-trisphosphate_receptor_interacting_protein	EFM19_BREAST	0.16	0.34	0.1231	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	BCAS3--TG	5	3	BCAS3	37888	chr17:59161925:+	TG	60639	chr8:133880360:+	ONLY_REF_SPLICE	YES	22	0	0.27	1	0.056	0.0336	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,TG->chr8:133879203-134147147:+,thyroglobulin	EFM19_BREAST	0.27	1	0.0896	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MAP2K6--TNRC6C	4	7	MAP2K6	1303	chr17:67411141:+	TNRC6C	34104	chr17:76071217:+	ONLY_REF_SPLICE	YES	8	14	0.58	0.44	0.0448	0.0783	MAP2K6->chr17:67410839-67539472:+,mitogen-activated_protein_kinase_kinase_6,TNRC6C->chr17:76000249-76104916:+,trinucleotide_repeat_containing_6C	EFM19_BREAST	0.44	0.58	0.1231	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	SLX4IP--PI3	3	10	SLX4IP	1151	chr20:10416101:+	PI3	13907	chr20:43803482:+	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.0336	0.1119	SLX4IP->SLX4_interacting_protein,chr20:10415951-10617477:+,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	EFM19_BREAST	0.81	1	0.1455	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	CNBP--RPL18	5	0	CNBP	2683	chr3:128890079:-	RPL18	9135	chr19:49121094:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	CNBP->CCHC-type_zinc_finger_nucleic_acid_binding_protein,chr3:128888327-128902765:-,RPL18->chr19:49118585-49122793:-,ribosomal_protein_L18	EFM19_BREAST	1	1	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	WDFY3--RP11-8L2.1	4	2	WDFY3	2277	chr4:85853423:-	RP11-8L2.1	92016	chr4:84933272:-	ONLY_REF_SPLICE	YES	2	2	0.75	0.75	0.0448	0.0224	WDFY3->WD_repeat_and_FYVE_domain_containing_3,chr4:85590704-85887544:-,RP11-8L2.1->chr4:84717589-85214565:-	EFM19_BREAST	0.75	0.75	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	ZCCHC7--FAM219A	4	0	ZCCHC7	1085	chr9:37120620:+	FAM219A	23460	chr9:34405962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0448	0	ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,FAM219A->chr9:34398182-34458568:-,family_with_sequence_similarity_219_member_A	EFM19_BREAST	1	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	NCOR1--AP005135.2	3	3	NCOR1	44796	chr17:15965419:-	AP005135.2	64376	chr11:134931841:-	ONLY_REF_SPLICE	YES	69	0	0.08	1	0.0336	0.0336	NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1,AP005135.2->chr11:134931675-134945793:-	EFM19_BREAST	0.08	1	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	SBNO2--C19orf26	3	2	SBNO2	1112	chr19:1174171:-	C19orf26	29371	chr19:1236120:-	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0336	0.0224	LOCAL_REARRANGEMENT:-:[54004],SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),C19orf26->chr19:1228286-1238026:-	EFM19_BREAST	0.26	1	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	SLX4IP--PI3	3	2	SLX4IP	2207	chr20:10438879:+	PI3	14927	chr20:43804502:+	ONLY_REF_SPLICE	YES	4	4	0.56	0.56	0.0336	0.0224	SLX4IP->SLX4_interacting_protein,chr20:10415951-10617477:+,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	EFM19_BREAST	0.56	0.56	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	PPME1--AP000769.1	2	5	PPME1	3142	chr11:73915490:+	AP000769.1	25333	chr11:65233556:+	ONLY_REF_SPLICE	YES	38	0	0.16	1	0.0224	0.056	PPME1->chr11:73882144-73965748:+,protein_phosphatase_methylesterase_1,AP000769.1->chr11:65222728-65234028:+	EFM19_BREAST	0.16	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	SBNO2--C19orf26	2	5	SBNO2	2810	chr19:1168693:-	C19orf26	29371	chr19:1236120:-	ONLY_REF_SPLICE	YES	66	0	0.1	1	0.0224	0.056	LOCAL_REARRANGEMENT:-:[54004],SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),C19orf26->chr19:1228286-1238026:-	EFM19_BREAST	0.1	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	THRAP3--HCG20	3	1	THRAP3	1687	chr1:36690703:+	HCG20	22389	chr6:30756468:+	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.0336	0.0112	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,HCG20->HLA_complex_group_20_(non-protein_coding),chr6:30734602-30760027:+	EFM19_BREAST	0.33	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	KIRREL--ZFYVE9	3	0	KIRREL	1456	chr1:157963518:+	ZFYVE9	27607	chr1:52729445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	{Klijn_CCL:Breast=1},KIRREL->chr1:157963063-158070052:+,kin_of_IRRE_like_(Drosophila),ZFYVE9->chr1:52608046-52812358:+,zinc_finger_FYVE-type_containing_9	EFM19_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	AL163953.3--NID2	2	2	AL163953.3	5422	chr14:53784856:+	NID2	18260	chr14:52509649:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0224	0.0224	AL163953.3->chr14:53635772-54153976:+,NID2->chr14:52471521-52535712:-,nidogen_2	EFM19_BREAST	0.8	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	ZCCHC7--FAM219A	1	5	ZCCHC7	5915	chr9:37147442:+	FAM219A	23460	chr9:34405962:-	ONLY_REF_SPLICE	YES	60	7	0.09	0.46	0.0112	0.056	ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,FAM219A->chr9:34398182-34458568:-,family_with_sequence_similarity_219_member_A	EFM19_BREAST	0.09	0.46	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	ASUN--CSNK2B-LY6G5B-1181	2	0	ASUN	11100	chr12:27070577:-	CSNK2B-LY6G5B-1181	25545	chr6:31638750:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-,CSNK2B-LY6G5B-1181->chr6:31633879-31641323:+	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	CNN2--CIRBP	2	0	CNN2	4331	chr19:1032695:+	CIRBP	19636	chr19:1270927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	CNN2->calponin_2,chr19:1026298-1039068:+,CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	EFM19_BREAST	1	1	0.0224	TRUE	0	1	0	1	0	TRUE	ACH-000330
EFM19_BREAST	CSNK1G2--BTBD2	2	0	CSNK1G2	1230	chr19:1941417:+	BTBD2	22552	chr19:1997462:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	LOCAL_INVERSION:+:-:[4110],CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,BTBD2->BTB_domain_containing_2,chr19:1985447-2034880:-	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	3	0	TRUE	ACH-000330
EFM19_BREAST	DOCK5--MAPK10	2	0	DOCK5	58027	chr8:25266456:+	MAPK10	100958	chr4:86952584:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,MAPK10->Oncogene{Bushman},chr4:86936276-87515284:-,mitogen-activated_protein_kinase_10	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	LINC01016--FAM156A	2	0	LINC01016	2450	chr6:33861356:-	FAM156A	17431	chrX:52985544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	LINC01016->chr6:33835283-33864691:-,long_intergenic_non-protein_coding_RNA_1016,FAM156A->chrX:52976462-53024651:-,family_with_sequence_similarity_156_member_A	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MTMR3--TSR1	2	0	MTMR3	3345	chr22:30367051:+	TSR1	40567	chr17:2232769:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,TSR1->TSR1,_ribosome_maturation_factor,chr17:2225797-2240801:-	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	RCC1--HAUS1	2	0	RCC1	2175	chr1:28834672:+	HAUS1	26812	chr18:43702433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	TAF9--ZCCHC7	2	0	TAF9	7559	chr5:68651476:-	ZCCHC7	14964	chr9:37126309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	WBP1L--SCOC	2	0	WBP1L	3446	chr10:104557852:+	SCOC	17871	chr4:141300275:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+,SCOC->chr4:141178440-141306880:+,short_coiled-coil_protein	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	DCAF17--RP11-125B21.2	1	1	DCAF17	1970	chr2:172291696:+	RP11-125B21.2	42191	chr9:2425540:-	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0112	0.0112	DCAF17->DDB1_and_CUL4_associated_factor_17,chr2:172290727-172341562:+,RP11-125B21.2->chr9:2422702-2641395:-	EFM19_BREAST	0.25	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
HCC78_LUNG	SLC34A2--ROS1	695	278	SLC34A2	4738	chr4:25665952:+	ROS1	53374	chr6:117650609:-	ONLY_REF_SPLICE	YES	185	0	0.84	1	7.7738	3.1095	Cosmic{samples=1216,mutations=12,papers=39},chimerdb_pubmed{Lung Cancer},{Klijn_CCL:Lung=1},SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,ROS1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},ROS_proto-oncogene_1,_receptor_tyrosine_kinase,chr6:117609463-117747018:-	HCC78_LUNG	0.84	1	10.8833	TRUE	0	0	0	2	0	TRUE	ACH-000562
HCC78_LUNG	SLC34A2--ROS1	43	21	SLC34A2	4738	chr4:25665952:+	ROS1	56592	chr6:117645578:-	ONLY_REF_SPLICE	YES	185	56	0.26	0.53	0.481	0.2349	Cosmic{samples=1216,mutations=12,papers=39},chimerdb_pubmed{Lung Cancer},{Klijn_CCL:Lung=1},SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,ROS1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},ROS_proto-oncogene_1,_receptor_tyrosine_kinase,chr6:117609463-117747018:-	HCC78_LUNG	0.26	0.53	0.7159	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	GMEB1--SNHG3	23	17	GMEB1	9055	chr1:29030841:+	SNHG3	21608	chr1:28834640:+	ONLY_REF_SPLICE	YES	7	27	0.85	0.6	0.2573	0.1902	GMEB1->chr1:28995244-29045865:+,glucocorticoid_modulatory_element_binding_protein_1,SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3	HCC78_LUNG	0.6	0.85	0.4475	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	SLC34A2--ROS1	12	39	SLC34A2	4738	chr4:25665952:+	ROS1	55401	chr6:117647577:-	ONLY_REF_SPLICE	YES	185	9	0.22	0.85	0.1342	0.4362	Cosmic{samples=1216,mutations=12,papers=39},chimerdb_pubmed{Lung Cancer},{Klijn_CCL:Lung=1},SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,ROS1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},ROS_proto-oncogene_1,_receptor_tyrosine_kinase,chr6:117609463-117747018:-	HCC78_LUNG	0.22	0.85	0.5704	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	PEX3--AIG1	15	4	PEX3	2441	chr6:143780353:+	AIG1	26781	chr6:143654419:+	ONLY_REF_SPLICE	YES	32	95	0.37	0.17	0.1678	0.0447	PEX3->chr6:143771944-143811147:+,peroxisomal_biogenesis_factor_3,AIG1->androgen-induced_1,chr6:143381633-143661441:+	HCC78_LUNG	0.17	0.37	0.2125	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	NIPA1--UBE3A	14	4	NIPA1	4187	chr15:23086234:-	UBE3A	30329	chr15:25605674:-	ONLY_REF_SPLICE	YES	15	51	0.55	0.26	0.1566	0.0447	NIPA1->chr15:23043277-23100005:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_1,UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A	HCC78_LUNG	0.26	0.55	0.2013	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	CUL4B--TMEM255A	8	3	CUL4B	13099	chrX:119676821:-	TMEM255A	33313	chrX:119427906:-	ONLY_REF_SPLICE	YES	44	0	0.2	1	0.0895	0.0336	CUL4B->Oncogene{Bushman},chrX:119658464-119709649:-,cullin_4B,TMEM255A->chrX:119392505-119445411:-,transmembrane_protein_255A	HCC78_LUNG	0.2	1	0.1231	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	NIPA1--UBE3A	4	4	NIPA1	4187	chr15:23086234:-	UBE3A	30333	chr15:25605670:-	INCL_NON_REF_SPLICE	YES	15	50	0.35	0.14	0.0447	0.0447	NIPA1->chr15:23043277-23100005:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_1,UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A	HCC78_LUNG	0.14	0.35	0.0894	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	SLC34A2--ROS1	1	15	SLC34A2	4738	chr4:25665952:+	ROS1	57676	chr6:117642557:-	ONLY_REF_SPLICE	YES	185	85	0.08	0.16	0.0112	0.1678	Cosmic{samples=1216,mutations=12,papers=39},chimerdb_pubmed{Lung Cancer},{Klijn_CCL:Lung=1},SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,ROS1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},ROS_proto-oncogene_1,_receptor_tyrosine_kinase,chr6:117609463-117747018:-	HCC78_LUNG	0.08	0.16	0.179	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	C15orf38--UPF3A	2	0	C15orf38	5882	chr15:90446448:-	UPF3A	17446	chr13:115064315:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	C15orf38->chr15:90443159-90456188:-,UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+	HCC78_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	CENPK--MORC2	2	0	CENPK	2471	chr5:64857290:-	MORC2	22519	chr22:31354680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	CENPK->centromere_protein_K,chr5:64813593-64858998:-,MORC2->MORC_family_CW-type_zinc_finger_2,chr22:31321117-31364284:-	HCC78_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	HDAC1--LCK	2	0	HDAC1	3583	chr1:32782383:+	LCK	16311	chr1:32739926:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	LOCAL_REARRANGEMENT:+:[5921],HDAC1->chr1:32757687-32799236:+,histone_deacetylase_1,LCK->LCK_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr1:32716840-32751766:+	HCC78_LUNG	1	1	0.0224	TRUE	0	1	0	1	1	TRUE	ACH-000562
HCC78_LUNG	HNF1B--DUSP14	2	0	HNF1B	1706	chr17:36104532:-	DUSP14	21051	chr17:35870779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	HNF1B->HNF1_homeobox_B,chr17:36046435-36105237:-,DUSP14->chr17:35849937-35873603:+,dual_specificity_phosphatase_14	HCC78_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	SLC34A2--ROS1	2	0	SLC34A2	4738	chr4:25665952:+	ROS1	66421	chr6:117609965:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	Cosmic{samples=1216,mutations=12,papers=39},chimerdb_pubmed{Lung Cancer},{Klijn_CCL:Lung=1},SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,ROS1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},ROS_proto-oncogene_1,_receptor_tyrosine_kinase,chr6:117609463-117747018:-	HCC78_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000562
TT_THYROID	BSDC1--FAF1	446	4	BSDC1	1652	chr1:32859681:-	FAF1	37947	chr1:50957473:-	ONLY_REF_SPLICE	YES	3	2	0.99	1	5.096	0.0457	BSDC1->BSD_domain_containing_1,chr1:32830704-32860332:-,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	TT_THYROID	0.99	1	5.1417	TRUE	0	0	0	2	0	TRUE	ACH-001321
TT_THYROID	CASC9--RP11-300E4.2	14	6	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	19	0	0.51	1	0.16	0.0686	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	TT_THYROID	0.51	1	0.2286	TRUE	0	23	0	19	23	TRUE	ACH-001321
TT_THYROID	CCDC91--RAD51AP1	14	3	CCDC91	25881	chr12:28637098:+	RAD51AP1	35989	chr12:4651050:+	ONLY_REF_SPLICE	YES	17	12	0.5	0.59	0.16	0.0343	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RAD51AP1->RAD51_associated_protein_1,chr12:4647950-4669214:+	TT_THYROID	0.5	0.59	0.1943	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	CASC9--RP11-300E4.2	4	2	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	14	0	0.3	1	0.0457	0.0229	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	TT_THYROID	0.3	1	0.0686	TRUE	0	12	0	10	12	TRUE	ACH-001321
TT_THYROID	SETBP1--CXADRP3	4	2	SETBP1	5740	chr18:42449248:+	CXADRP3	24341	chr18:14490579:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0457	0.0229	SETBP1->Oncogene{Bushman},SET_binding_protein_1,chr18:42260138-42648475:+,CXADRP3->chr18:14477954-14499277:-,coxsackie_virus_and_adenovirus_receptor_pseudogene_3	TT_THYROID	0.55	1	0.0686	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	NAV2--OPCML-IT1	4	1	NAV2	3983	chr11:19799063:+	OPCML-IT1	61570	chr11:133231888:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0457	0.0114	NAV2->chr11:19372271-20143144:+,neuron_navigator_2,OPCML-IT1->OPCML_intronic_transcript_1,chr11:133229924-133235975:-	TT_THYROID	0.83	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	NAV2--OPCML-IT1	4	1	NAV2	3983	chr11:19799063:+	OPCML-IT1	61371	chr11:133232087:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0457	0.0114	NAV2->chr11:19372271-20143144:+,neuron_navigator_2,OPCML-IT1->OPCML_intronic_transcript_1,chr11:133229924-133235975:-	TT_THYROID	0.83	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	AATK--PDXP	3	0	AATK	16514	chr17:79091734:-	PDXP	23563	chr22:38062697:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	AATK->apoptosis-associated_tyrosine_kinase,chr17:79091095-79139877:-,PDXP->chr22:38054734-38062941:+,pyridoxal_phosphatase	TT_THYROID	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	MMP16--MSRA	3	0	MMP16	5679	chr8:89179898:-	MSRA	34510	chr8:10159044:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	MMP16->chr8:89044237-89340254:-,matrix_metallopeptidase_16,MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A	TT_THYROID	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	PSAP--CALCA	3	0	PSAP	12449	chr10:73577072:-	CALCA	19962	chr11:14990355:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	HGNC_GENEFAM,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,CALCA->Oncogene{Bushman},calcitonin_related_polypeptide_alpha,chr11:14988214-14993900:-	TT_THYROID	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	SEC22C--CKAP2	3	0	SEC22C	21608	chr3:42590684:-	CKAP2	34970	chr13:53049338:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	SEC22C->SEC22_homolog_C,_vesicle_trafficking_protein,chr3:42589461-42642572:-,CKAP2->chr13:53029564-53050763:+,cytoskeleton_associated_protein_2	TT_THYROID	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	SEZ6L2--KIAA1522	3	0	SEZ6L2	3487	chr16:29908382:-	KIAA1522	28526	chr1:33239010:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	SEZ6L2->chr16:29882480-29910868:-,seizure_related_6_homolog_like_2,KIAA1522->KIAA1522,chr1:33207486-33240571:+	TT_THYROID	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	TEX41--TUBGCP3	3	0	TEX41	7881	chr2:145525847:+	TUBGCP3	56909	chr13:113181798:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	TEX41->chr2:145425534-145940216:+,testis_expressed_41_(non-protein_coding),TUBGCP3->chr13:113139325-113242481:-,tubulin_gamma_complex_associated_protein_3	TT_THYROID	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	RP11-681L8.1--STPG2	2	2	RP11-681L8.1	1346	chr4:98554629:-	STPG2	23575	chr4:98184732:-	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.0229	0.0229	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TT_THYROID	0.67	1	0.0458	TRUE	0	3	0	2	3	TRUE	ACH-001321
TT_THYROID	RP11-681L8.1--STPG2	2	2	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0.0229	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TT_THYROID	1	1	0.0458	TRUE	0	6	0	7	6	TRUE	ACH-001321
TT_THYROID	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0229	0.0114	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TT_THYROID	0.75	1	0.0343	TRUE	0	2	0	5	2	TRUE	ACH-001321
TT_THYROID	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0229	0.0114	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TT_THYROID	0.43	1	0.0343	TRUE	0	0	0	4	0	TRUE	ACH-001321
TT_THYROID	ATXN1--ZFAND3	2	0	ATXN1	11220	chr6:16658007:-	ZFAND3	41224	chr6:38084348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	ATXN1->ataxin_1,chr6:16299343-16761722:-,ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	CALM2--CAPRIN2	2	0	CALM2	1161	chr2:47403580:-	CAPRIN2	16330	chr12:30906493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	CTBP2--PLEKHA1	2	0	CTBP2	11531	chr10:126727566:-	PLEKHA1	31875	chr10:124151819:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	DANCR--DNMT3A	2	0	DANCR	1530	chr4:53579126:+	DNMT3A	9059	chr2:25537030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	LRP8--ADRM1	2	0	LRP8	7133	chr1:53741303:-	ADRM1	33238	chr20:60882427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LRP8->LDL_receptor_related_protein_8,chr1:53711217-53793742:-,ADRM1->adhesion_regulating_molecule_1,chr20:60877149-60883918:+	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	MRPL22--PCDHA1	2	0	MRPL22	5346	chr5:154336772:+	PCDHA1	17643	chr5:140358534:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	MRPL22->chr5:154320630-154348971:+,mitochondrial_ribosomal_protein_L22,PCDHA1->chr5:140165876-140391929:+,protocadherin_alpha_1	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	NNT--GNAS	2	0	NNT	1603	chr5:43603396:+	GNAS	48431	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	NNT->chr5:43602794-43707507:+,nicotinamide_nucleotide_transhydrogenase,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	POLR2J3--STYXL1	2	0	POLR2J3	5847	chr7:102207444:-	STYXL1	29372	chr7:75625917:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,STYXL1->chr7:75625656-75677322:-,serine/threonine/tyrosine_interacting-like_1	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	PUM1--ATP13A3	2	0	PUM1	23300	chr1:31422980:-	ATP13A3	67618	chr3:194126845:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,ATP13A3->ATPase_13A3,chr3:194123401-194219093:-	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	SNRPN--MYEF2	2	0	SNRPN	11083	chr15:25213229:+	MYEF2	35514	chr15:48441568:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N,MYEF2->chr15:48431625-48470714:-,myelin_expression_factor_2	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	TMEM14B--CBFA2T2	2	0	TMEM14B	9876	chr6:10770437:+	CBFA2T2	27309	chr20:32194762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	TMEM14B->chr6:10747992-10852986:+,transmembrane_protein_14B,CBFA2T2->CBFA2/RUNX1_translocation_partner_2,chr20:32077881-32237842:+	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	VAMP4--EXD2	2	0	VAMP4	2453	chr1:171707489:-	EXD2	25514	chr14:69701417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	VAMP4->chr1:171669300-171711387:-,vesicle_associated_membrane_protein_4,EXD2->chr14:69658228-69709075:+,exonuclease_3'-5'_domain_containing_2	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	KMT2C--AP000345.1	1	1	KMT2C	20341	chr7:151927008:-	AP000345.1	75945	chr22:23825313:-	ONLY_REF_SPLICE	YES	13	0	0.13	1	0.0114	0.0114	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,AP000345.1->chr22:23804273-23829167:-	TT_THYROID	0.13	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0114	0.0114	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TT_THYROID	0.67	1	0.0228	TRUE	0	4	1	7	4	TRUE	ACH-001321
TT_THYROID	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	NO	2	1	0.5	0.67	0.0114	0.0114	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TT_THYROID	0.5	0.67	0.0228	TRUE	0	1	0	3	1	TRUE	ACH-001321
TT_THYROID	SETBP1--CXADRP3	1	1	SETBP1	5740	chr18:42449248:+	CXADRP3	25397	chr18:14479392:-	ONLY_REF_SPLICE	NO	5	1	0.29	0.67	0.0114	0.0114	SETBP1->Oncogene{Bushman},SET_binding_protein_1,chr18:42260138-42648475:+,CXADRP3->chr18:14477954-14499277:-,coxsackie_virus_and_adenovirus_receptor_pseudogene_3	TT_THYROID	0.29	0.67	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001321
SNU5_STOMACH	ARHGEF10L--ZNF595	72	18	ARHGEF10L	31309	chr1:17991090:+	ZNF595	42026	chr4:59323:+	ONLY_REF_SPLICE	YES	17	14	0.84	0.87	0.6501	0.1625	{Klijn_CCL:Stomach=1},ARHGEF10L->Rho_guanine_nucleotide_exchange_factor_10_like,chr1:17866330-18024369:+,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	SNU5_STOMACH	0.84	0.87	0.8126	TRUE	0	0	0	1	0	TRUE	ACH-000303
SNU5_STOMACH	EIF1--PPIA	12	0	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1083	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	SNU5_STOMACH	1	1	0.1083	TRUE	0	0	0	7	0	TRUE	ACH-000303
SNU5_STOMACH	ANP32B--SEPT7	9	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0813	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	SNU5_STOMACH	1	1	0.0813	TRUE	1	1	0	18	1	TRUE	ACH-000303
SNU5_STOMACH	TCF12--DMD	5	6	TCF12	7716	chr15:57384089:+	DMD	100332	chrX:31986631:-	ONLY_REF_SPLICE	YES	43	0	0.2	1	0.0451	0.0542	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,DMD->chrX:31115794-33357558:-,dystrophin	SNU5_STOMACH	0.2	1	0.0993	TRUE	0	0	0	1	0	TRUE	ACH-000303
SNU5_STOMACH	CAPZA2--MET	2	0	CAPZA2	3371	chr7:116502704:+	MET	27625	chr7:116339125:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	SNU5_STOMACH	1	1	0.0181	TRUE	0	0	0	3	0	TRUE	ACH-000303
SNU5_STOMACH	PTRH2--RP11-632K20.7	2	0	PTRH2	1256	chr17:57784732:-	RP11-632K20.7	13743	chr15:32825569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2,RP11-632K20.7->chr15:32812049-32829127:-	SNU5_STOMACH	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000303
SNU626_CENTRAL_NERVOUS_SYSTEM	ZMYM6--RNF139	11	1	ZMYM6	1154	chr1:35497416:-	RNF139	30934	chr8:125498072:+	ONLY_REF_SPLICE	YES	7	61	0.63	0.16	0.1097	0.01	ZMYM6->chr1:35447134-35497342:-,chr1:35449523-35497569:-,zinc_finger_MYM-type_containing_6,RNF139->Oncogene{Bushman},chr8:125486979-125500155:+,ring_finger_protein_139	SNU626_CENTRAL_NERVOUS_SYSTEM	0.16	0.63	0.1197	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	ZMYM6--RNF139	7	3	ZMYM6	2422	chr1:35496148:-	RNF139	30934	chr8:125498072:+	ONLY_REF_SPLICE	YES	27	61	0.27	0.14	0.0698	0.0299	ZMYM6->chr1:35447134-35497342:-,chr1:35449523-35497569:-,zinc_finger_MYM-type_containing_6,RNF139->Oncogene{Bushman},chr8:125486979-125500155:+,ring_finger_protein_139	SNU626_CENTRAL_NERVOUS_SYSTEM	0.14	0.27	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	AVEN--AGPS	7	0	AVEN	2575	chr15:34295233:-	AGPS	13981	chr2:178284997:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0698	0	AVEN->apoptosis_and_caspase_activation_inhibitor,chr15:34158428-34331377:-,AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0698	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	ZMYM6--TRMT12	3	0	ZMYM6	2422	chr1:35496148:-	TRMT12	31533	chr8:125474268:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	ZMYM6->chr1:35447134-35497342:-,chr1:35449523-35497569:-,zinc_finger_MYM-type_containing_6,TRMT12->chr8:125463048-125474391:+,tRNA_methyltransferase_12_homolog_(S._cerevisiae)	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0299	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	AC040160.1--CADM1	2	0	AC040160.1	2155	chr16:67257729:-	CADM1	9542	chr11:115270231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	AC040160.1->chr16:67244251-67260930:-,CADM1->cell_adhesion_molecule_1,chr11:115039938-115375675:-	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	CD2AP--SLFN12	2	0	CD2AP	14168	chr6:47563762:+	SLFN12	30659	chr17:33750087:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	CD2AP->CD2-associated_protein,chr6:47445525-47594999:+,SLFN12->chr17:33738079-33760302:-,schlafen_family_member_12	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	LINC00478--AKIRIN1	2	0	LINC00478	7469	chr21:17764005:+	AKIRIN1	26745	chr1:39463843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LINC00478->chr21:17442842-17999716:+,AKIRIN1->akirin_1,chr1:39456895-39471731:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MFSD8--KLF5	2	0	MFSD8	12326	chr4:128842679:-	KLF5	23101	chr13:73635999:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	MFSD8->chr4:128838960-128887150:-,major_facilitator_superfamily_domain_containing_8,KLF5->Kruppel-like_factor_5_(intestinal),Oncogene{Bushman},chr13:73629114-73651676:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MMP14--PRMT5	2	0	MMP14	1369	chr14:23306134:+	PRMT5	16005	chr14:23396023:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LOCAL_INVERSION:+:-:[71484],MMP14->Oncogene{Bushman},chr14:23305766-23318236:+,matrix_metallopeptidase_14,PRMT5->chr14:23389720-23398794:-,protein_arginine_methyltransferase_5	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000370
T3M10_LUNG	NUP62--NEDD4L	4	3	NUP62	9564	chr19:50412233:-	NEDD4L	34493	chr18:55983231:+	INCL_NON_REF_SPLICE	NO	32	36	0.18	0.16	0.0591	0.0443	NUP62->chr19:50410082-50433020:-,nucleoporin_62kDa,NEDD4L->chr18:55711599-56068772:+,neural_precursor_cell_expressed,_developmentally_down-regulated_4-like,_E3_ubiquitin_protein_ligase	T3M10_LUNG	0.16	0.18	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	ANP32E--AHSA1	3	0	ANP32E	9307	chr1:150193017:-	AHSA1	16120	chr14:77926071:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,AHSA1->activator_of_Hsp90_ATPase_activity_1,chr14:77924213-77935817:+	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	AP1S3--FARSB	3	0	AP1S3	1580	chr2:224702165:-	FARSB	31988	chr2:223464802:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	AP1S3->adaptor_related_protein_complex_1_sigma_3_subunit,chr2:224616403-224702744:-,FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	ARF3--RPL10	3	0	ARF3	7964	chr12:49332416:-	RPL10	17285	chrX:153627887:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,RPL10->Oncogene{Bushman},chrX:153618315-153637504:+,ribosomal_protein_L10	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	ATP6V0C--SHISA5	3	0	ATP6V0C	3321	chr16:2569792:+	SHISA5	7280	chr3:48541728:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	ATP6V0C->ATPase_H+_transporting_V0_subunit_c,chr16:2563871-2570219:+,SHISA5->chr3:48509197-48542259:-,shisa_family_member_5	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	BBS9--THBS1	3	0	BBS9	2893	chr7:33185948:+	THBS1	44979	chr15:39883761:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	BBS9->Bardet-Biedl_syndrome_9,chr7:33168856-33645680:+,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	LRP1--EEF1A1	3	0	LRP1	31117	chr12:57574240:+	EEF1A1	65876	chr6:74229689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,LRP1->LDL_receptor_related_protein_1,chr12:57522276-57607134:+,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	PRRC2A--PCK2	3	0	PRRC2A	7542	chr6:31595869:+	PCK2	24665	chr14:24568283:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A,PCK2->chr14:24563262-24579807:+,phosphoenolpyruvate_carboxykinase_2,_mitochondrial	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	RDX--SS18	3	0	RDX	18191	chr11:110101311:-	SS18	50746	chr18:23596784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	RDX->chr11:110045605-110167447:-,radixin,SS18->Oncogene{Bushman},SS18,_nBAF_chromatin_remodeling_complex_subunit,chr18:23596578-23671181:-	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	2	0	TRUE	ACH-000813
T3M10_LUNG	SMG7--GRAMD1B	3	0	SMG7	25801	chr1:183518984:+	GRAMD1B	60842	chr11:123497366:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	SMG7->SMG7_nonsense_mediated_mRNA_decay_factor,chr1:183441351-183567381:+,GRAMD1B->GRAM_domain_containing_1B,chr11:123396344-123498482:+	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	SMOX--ABHD16A	3	0	SMOX	6831	chr20:4155910:+	ABHD16A	22919	chr6:31659695:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	SMOX->chr20:4101627-4168394:+,spermine_oxidase,ABHD16A->abhydrolase_domain_containing_16A,chr6:31654726-31671221:-	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	THOC1--CDKN3	3	0	THOC1	6100	chr18:260186:-	CDKN3	28778	chr14:54875463:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	THOC1->THO_complex_1,chr18:214520-268050:-,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	UBE2F--LRRFIP1	3	0	UBE2F	8435	chr2:238903451:+	LRRFIP1	58313	chr2:238688065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	GTEx&tcga_normals:1/3694=0.03%,UBE2F->chr2:238875469-238951236:+,ubiquitin_conjugating_enzyme_E2_F_(putative),LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	ZNF394--PDZD11	3	0	ZNF394	1203	chr7:99097745:-	PDZD11	13021	chrX:69507644:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	ZNF394->chr7:99084142-99097947:-,zinc_finger_protein_394,PDZD11->PDZ_domain_containing_11,chrX:69506445-69510364:-	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	CC2D1A--ZSWIM4	2	0	CC2D1A	2437	chr19:14020771:+	ZSWIM4	26069	chr19:13928030:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:+:[73970],CC2D1A->chr19:14017014-14041692:+,coiled-coil_and_C2_domain_containing_1A,ZSWIM4->chr19:13906274-13943044:+,zinc_finger_SWIM-type_containing_4	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	CCDC30--GCLC	2	0	CCDC30	7562	chr1:42948487:+	GCLC	58578	chr6:53374048:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	CCDC30->chr1:42929001-43120335:+,coiled-coil_domain_containing_30,GCLC->chr6:53362139-53481768:-,glutamate-cysteine_ligase_catalytic_subunit	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	CLPTM1L--TPCN2	2	0	CLPTM1L	14546	chr5:1322992:-	TPCN2	26569	chr11:68830352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	DNMT1--PTGIR	2	0	DNMT1	25708	chr19:10259560:-	PTGIR	45538	chr19:47124929:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,PTGIR->chr19:47123725-47128375:-,prostaglandin_I2_(prostacyclin)_receptor_(IP)	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	EIF3A--VCL	2	0	EIF3A	13766	chr10:120810711:-	VCL	26891	chr10:75802841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A,VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	HSPD1--CDC20	2	0	HSPD1	9779	chr2:198354921:-	CDC20	20392	chr1:43828622:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1,CDC20->Oncogene{Bushman},cell_division_cycle_20,chr1:43824626-43828874:+	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	NPHP4--L3MBTL3	2	0	NPHP4	6941	chr1:6021854:-	L3MBTL3	45809	chr6:130343372:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	NPHP4->chr1:5922871-6052533:-,nephronophthisis_4,L3MBTL3->chr6:130334844-130462594:+,l(3)mbt-like_3_(Drosophila)	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	OTUD5--DAZAP1	2	0	OTUD5	1155	chrX:48815494:-	DAZAP1	17707	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	OTUD5->OTU_deubiquitinase_5,chrX:48779305-48815648:-,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	QRSL1--RTN4IP1	2	0	QRSL1	1128	chr6:107077580:+	RTN4IP1	22687	chr6:107050797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[80],QRSL1->chr6:107077453-107116292:+,glutaminyl-tRNA_synthase_(glutamine-hydrolyzing)-like_1,RTN4IP1->Oncogene{Bushman},chr6:107018903-107077373:-,reticulon_4_interacting_protein_1	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	SERF2--C10orf76	2	0	SERF2	3155	chr15:44077732:+	C10orf76	36879	chr10:103716480:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	SERTAD2--DPY19L1	2	0	SERTAD2	3019	chr2:64880754:-	DPY19L1	13729	chr7:35058208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	SERTAD2->SERTA_domain_containing_2,chr2:64858755-64978139:-,DPY19L1->chr7:34968488-35077883:-,dpy-19_like_1_(C._elegans)	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	TNKS--LPAR1	2	0	TNKS	9191	chr8:9473187:+	LPAR1	53981	chr9:113704448:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	TNKS->chr8:9413424-9639856:+,tankyrase,LPAR1->Oncogene{Bushman},chr9:113635543-113800981:-,lysophosphatidic_acid_receptor_1	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	TRIO--HSPA9	2	0	TRIO	36731	chr5:14406781:+	HSPA9	84116	chr5:137895780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	C14orf142--LIMCH1	1	1	C14orf142	1186	chr14:93673254:-	LIMCH1	11867	chr4:41496553:+	ONLY_REF_SPLICE	NO	12	14	0.14	0.12	0.0148	0.0148	C14orf142->chr14:93669239-93673439:-,chromosome_14_open_reading_frame_142,LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+	T3M10_LUNG	0.12	0.14	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	MEGF9--C5	1	1	MEGF9	1713	chr9:123476036:-	C5	31293	chr9:123780130:-	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0148	0.0148	MEGF9->chr9:123363091-123476748:-,multiple_EGF_like_domains_9,C5->chr9:123714616-123812554:-,complement_component_5	T3M10_LUNG	0.5	0.67	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	TNPO2--RTBDN	1	1	TNPO2	1763	chr19:12834063:-	RTBDN	21100	chr19:12945660:-	ONLY_REF_SPLICE	YES	0	8	1	0.2	0.0148	0.0148	TNPO2->chr19:12810008-12834825:-,transportin_2,RTBDN->chr19:12936292-12946242:-,retbindin	T3M10_LUNG	0.2	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000813
JHOC5_OVARY	ITCH--ASIP	1081	396	ITCH	16854	chr20:33050026:+	ASIP	36604	chr20:32850638:+	ONLY_REF_SPLICE	YES	210	0	0.88	1	10.8832	3.9868	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUAD:1|LUSC:1|OV:1],LOCAL_REARRANGEMENT:+:[93891],ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	JHOC5_OVARY	0.88	1	14.87	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	CAPZB--OSBP2	787	31	CAPZB	1137	chr1:19811930:-	OSBP2	34624	chr22:31283413:+	ONLY_REF_SPLICE	YES	28	5	0.97	0.99	7.9233	0.3121	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,OSBP2->chr22:31089769-31303811:+,oxysterol_binding_protein_2	JHOC5_OVARY	0.97	0.99	8.2354	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	RP13-143G15.4--MAP7	155	1	RP13-143G15.4	1058	chr6:136546676:-	MAP7	16111	chr6:136742937:-	ONLY_REF_SPLICE	YES	0	13	1	0.92	1.5605	0.0101	RP13-143G15.4->chr6:136415853-136546733:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	JHOC5_OVARY	0.92	1	1.5706	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MAP2K2--BEST2	138	56	MAP2K2	3704	chr19:4110507:-	BEST2	23272	chr19:12868465:+	ONLY_REF_SPLICE	YES	206	0	0.48	1	1.3893	0.5638	MAP2K2->ArcherDX_panel,FoundationOne_panel,chr19:4090319-4124126:-,mitogen-activated_protein_kinase_kinase_2,BEST2->bestrophin_2,chr19:12862516-12869272:+	JHOC5_OVARY	0.48	1	1.9531	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	FAM69B--LRRC37A5P	71	22	FAM69B	2294	chr9:139612163:+	LRRC37A5P	12596	chr9:114371549:-	ONLY_REF_SPLICE	YES	12	1	0.89	0.99	0.7148	0.2215	FAM69B->chr9:139607022-139618502:+,family_with_sequence_similarity_69_member_B,LRRC37A5P->chr9:114353872-114393569:-,leucine-rich_repeat_containing_37_member_A5,_pseudogene	JHOC5_OVARY	0.89	0.99	0.9363	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	CLIP1--ZCCHC8	31	22	CLIP1	28384	chr12:122794309:-	ZCCHC8	50372	chr12:122968110:-	ONLY_REF_SPLICE	YES	75	66	0.41	0.45	0.3121	0.2215	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[50238],CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,ZCCHC8->chr12:122957417-122985518:-,zinc_finger_CCHC-type_containing_8	JHOC5_OVARY	0.41	0.45	0.5336	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	RPA2--OPRD1	25	6	RPA2	3039	chr1:28233439:-	OPRD1	12322	chr1:29185466:+	ONLY_REF_SPLICE	YES	183	0	0.14	1	0.2517	0.0604	RPA2->Oncogene{Bushman},chr1:28218035-28241257:-,replication_protein_A2,OPRD1->chr1:29138654-29190208:+,opioid_receptor_delta_1	JHOC5_OVARY	0.14	1	0.3121	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	AL589743.1--RP11-536C10.17	22	12	AL589743.1	9393	chr14:19680685:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	133	0	0.2	1	0.2215	0.1208	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	JHOC5_OVARY	0.2	1	0.3423	TRUE	0	8	0	6	8	TRUE	ACH-000324
JHOC5_OVARY	AP000525.9--LA16c-60G3.6	22	12	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	55	0	0.38	1	0.2215	0.1208	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JHOC5_OVARY	0.38	1	0.3423	TRUE	0	8	0	10	8	TRUE	ACH-000324
JHOC5_OVARY	CTD-2314B22.3--RP11-536C10.19	20	9	CTD-2314B22.3	9273	chr14:19894700:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	148	0	0.16	1	0.2014	0.0906	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	JHOC5_OVARY	0.16	1	0.292	TRUE	0	1	0	4	1	TRUE	ACH-000324
JHOC5_OVARY	CTD-2314B22.3--RP11-536C10.19	21	2	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	7	0	0.77	1	0.2114	0.0201	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	JHOC5_OVARY	0.77	1	0.2315	TRUE	0	2	0	9	2	TRUE	ACH-000324
JHOC5_OVARY	LIMK2--CDKL3	18	10	LIMK2	4834	chr22:31654412:+	CDKL3	41298	chr5:133541822:-	ONLY_REF_SPLICE	YES	34	0	0.45	1	0.1812	0.1007	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	JHOC5_OVARY	0.45	1	0.2819	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	TTC39C--LAMA3	20	1	TTC39C	2885	chr18:21595002:+	LAMA3	63308	chr18:21437808:+	ONLY_REF_SPLICE	YES	30	39	0.41	0.35	0.2014	0.0101	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[37707],TTC39C->chr18:21572737-21715574:+,tetratricopeptide_repeat_domain_39C,LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3	JHOC5_OVARY	0.35	0.41	0.2115	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	64958	chr1:145351103:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	36627	chr1:145322772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	46078	chr1:145332223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	55504	chr1:145341649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	50784	chr1:145336929:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	60228	chr1:145346373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	80682	chr1:145366827:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	69692	chr1:145355837:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	31909	chr1:145318054:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	RNF4--SH3BP2	18	6	RNF4	2916	chr4:2470985:+	SH3BP2	35322	chr4:2822341:+	ONLY_REF_SPLICE	YES	68	24	0.26	0.5	0.1812	0.0604	RNF4->chr4:2463947-2627047:+,ring_finger_protein_4,SH3BP2->Oncogene{Bushman},SH3_domain_binding_protein_2,chr4:2794750-2842825:+	JHOC5_OVARY	0.26	0.5	0.2416	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	19	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	27189	chr1:145313334:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1913	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.1913	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	CLIP1--ZCCHC8	17	5	CLIP1	28384	chr12:122794309:-	ZCCHC8	51848	chr12:122966634:-	ONLY_REF_SPLICE	YES	75	112	0.23	0.16	0.1712	0.0503	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[50238],CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,ZCCHC8->chr12:122957417-122985518:-,zinc_finger_CCHC-type_containing_8	JHOC5_OVARY	0.16	0.23	0.2215	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	LIMK2--CDKL3	12	13	LIMK2	6485	chr22:31656063:+	CDKL3	41298	chr5:133541822:-	ONLY_REF_SPLICE	YES	47	0	0.35	1	0.1208	0.1309	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	JHOC5_OVARY	0.35	1	0.2517	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	CHMP6--RPTOR	13	6	CHMP6	4897	chr17:78971141:+	RPTOR	49307	chr17:78931424:+	ONLY_REF_SPLICE	YES	83	46	0.19	0.29	0.1309	0.0604	LOCAL_REARRANGEMENT:+:[25227],CHMP6->charged_multivesicular_body_protein_6,chr17:78965398-78983317:+,RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1	JHOC5_OVARY	0.19	0.29	0.1913	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	CLIP1--ZCCHC8	12	9	CLIP1	28384	chr12:122794309:-	ZCCHC8	51240	chr12:122967242:-	ONLY_REF_SPLICE	YES	75	85	0.22	0.2	0.1208	0.0906	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[50238],CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,ZCCHC8->chr12:122957417-122985518:-,zinc_finger_CCHC-type_containing_8	JHOC5_OVARY	0.2	0.22	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PTGR1--FAM69B	10	9	PTGR1	2633	chr9:114359597:-	FAM69B	20077	chr9:139612029:+	ONLY_REF_SPLICE	YES	93	9	0.17	0.68	0.1007	0.0906	PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1,FAM69B->chr9:139607022-139618502:+,family_with_sequence_similarity_69_member_B	JHOC5_OVARY	0.17	0.68	0.1913	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	CAPZB--OSBP2	1	32	CAPZB	2383	chr1:19810684:-	OSBP2	34624	chr22:31283413:+	ONLY_REF_SPLICE	YES	90	5	0.27	0.87	0.0101	0.3222	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,OSBP2->chr22:31089769-31303811:+,oxysterol_binding_protein_2	JHOC5_OVARY	0.27	0.87	0.3323	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	FAM69B--LRRC37A5P	7	2	FAM69B	2294	chr9:139612163:+	LRRC37A5P	14612	chr9:114365405:-	INCL_NON_REF_SPLICE	YES	12	7	0.43	0.56	0.0705	0.0201	FAM69B->chr9:139607022-139618502:+,family_with_sequence_similarity_69_member_B,LRRC37A5P->chr9:114353872-114393569:-,leucine-rich_repeat_containing_37_member_A5,_pseudogene	JHOC5_OVARY	0.43	0.56	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	B3GNTL1--TCF7L1	7	0	B3GNTL1	1074	chr17:81009613:-	TCF7L1	38563	chr2:85534765:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0705	0	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,TCF7L1->chr2:85360533-85537511:+,transcription_factor_7_like_1	JHOC5_OVARY	1	1	0.0705	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	7	0	PPP1R15B	5354	chr1:204374388:-	NBPF10	50784	chr1:145336929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0705	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0705	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	6	0	PPP1R15B	5354	chr1:204374388:-	NBPF10	46078	chr1:145332223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	6	0	PPP1R15B	5354	chr1:204374388:-	NBPF10	27189	chr1:145313334:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	6	0	PPP1R15B	5354	chr1:204374388:-	NBPF10	36627	chr1:145322772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	6	0	PPP1R15B	5354	chr1:204374388:-	NBPF10	31909	chr1:145318054:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	SPP1--MTATP6P1	6	0	SPP1	6793	chr4:88903711:+	MTATP6P1	10956	chr1:569387:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	JHOC5_OVARY	1	1	0.0604	TRUE	0	0	0	3	0	TRUE	ACH-000324
JHOC5_OVARY	FAM69B--LRRC37A5P	5	2	FAM69B	2294	chr9:139612163:+	LRRC37A5P	14624	chr9:114365393:-	ONLY_REF_SPLICE	YES	12	8	0.37	0.47	0.0503	0.0201	FAM69B->chr9:139607022-139618502:+,family_with_sequence_similarity_69_member_B,LRRC37A5P->chr9:114353872-114393569:-,leucine-rich_repeat_containing_37_member_A5,_pseudogene	JHOC5_OVARY	0.37	0.47	0.0704	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	CAPZB--OSBP2	1	12	CAPZB	1137	chr1:19811930:-	OSBP2	35421	chr22:31284210:+	ONLY_REF_SPLICE	YES	28	146	0.32	0.08	0.0101	0.1208	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,OSBP2->chr22:31089769-31303811:+,oxysterol_binding_protein_2	JHOC5_OVARY	0.08	0.32	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	HSPA1B--RALB	4	0	HSPA1B	3019	chr6:31797530:+	RALB	9589	chr2:121036223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	HSPA1B->chr6:31795512-31798031:+,heat_shock_protein_family_A_(Hsp70)_member_1B,RALB->Oncogene{Bushman},chr2:120997640-121052289:+,v-ral_simian_leukemia_viral_oncogene_homolog_B	JHOC5_OVARY	1	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	4	0	PPP1R15B	4392	chr1:204375350:-	NBPF10	50784	chr1:145336929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4392	chr1:204375350:-	NBPF10	27189	chr1:145313334:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4392	chr1:204375350:-	NBPF10	36627	chr1:145322772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	55503	chr1:145341648:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	64957	chr1:145351102:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	27188	chr1:145313333:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4392	chr1:204375350:-	NBPF10	46078	chr1:145332223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	46077	chr1:145332222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	31908	chr1:145318053:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4392	chr1:204375350:-	NBPF10	31909	chr1:145318054:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	36626	chr1:145322771:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	60227	chr1:145346372:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	80681	chr1:145366826:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	50783	chr1:145336928:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	69691	chr1:145355836:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	FAM69B--LRRC37A5P	2	3	FAM69B	1159	chr9:139607180:+	LRRC37A5P	12596	chr9:114371549:-	ONLY_REF_SPLICE	YES	9	1	0.36	0.83	0.0201	0.0302	FAM69B->chr9:139607022-139618502:+,family_with_sequence_similarity_69_member_B,LRRC37A5P->chr9:114353872-114393569:-,leucine-rich_repeat_containing_37_member_A5,_pseudogene	JHOC5_OVARY	0.36	0.83	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	RP13-143G15.4--MAP7	2	1	RP13-143G15.4	1058	chr6:136546676:-	MAP7	18288	chr6:136710655:-	ONLY_REF_SPLICE	YES	0	75	1	0.04	0.0201	0.0101	RP13-143G15.4->chr6:136415853-136546733:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	JHOC5_OVARY	0.04	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	CKMT2-AS1--XRCC4	2	0	CKMT2-AS1	1274	chr5:80597106:-	XRCC4	23807	chr5:82554349:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-,XRCC4->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_4,chr5:82373317-82649606:+	JHOC5_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	EIF3K--CNTN4-AS2	2	0	EIF3K	8562	chr19:39123136:+	CNTN4-AS2	15898	chr3:2174134:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,CNTN4-AS2->CNTN4_antisense_RNA_2,chr3:2152093-2185925:-	JHOC5_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	NUP93--CES1P2	2	0	NUP93	1107	chr16:56764123:+	CES1P2	40652	chr16:55783473:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NUP93->ArcherDX_panel,FoundationOne_panel,chr16:56764017-56878797:+,nucleoporin_93kDa,CES1P2->carboxylesterase_1_pseudogene_2,chr16:55762027-55784023:+	JHOC5_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	USP42--ANXA1	2	0	USP42	4177	chr7:6155154:+	ANXA1	30950	chr9:75773438:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	USP42->chr7:6144515-6201195:+,ubiquitin_specific_peptidase_42,ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+	JHOC5_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	ASAP2--RP11-521D12.1	1	3	ASAP2	3685	chr2:9437574:+	RP11-521D12.1	35968	chr2:9781493:+	ONLY_REF_SPLICE	YES	42	0	0.09	1	0.0101	0.0302	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-521D12.1->chr2:9778901-9789568:+	JHOC5_OVARY	0.09	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	RP11-307P5.1--SASH1	1	3	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	23	6	0.15	0.4	0.0101	0.0302	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	JHOC5_OVARY	0.15	0.4	0.0403	TRUE	0	0	0	11	0	TRUE	ACH-000324
JHOC5_OVARY	ASAP2--RP11-521D12.1	1	2	ASAP2	3685	chr2:9437574:+	RP11-521D12.1	37062	chr2:9788981:+	ONLY_REF_SPLICE	NO	42	0	0.07	1	0.0101	0.0201	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-521D12.1->chr2:9778901-9789568:+	JHOC5_OVARY	0.07	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	LIMK2--CDKL3	1	1	LIMK2	2286	chr22:31621805:+	CDKL3	41298	chr5:133541822:-	ONLY_REF_SPLICE	NO	44	0	0.04	1	0.0101	0.0101	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	JHOC5_OVARY	0.04	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	RP11-307P5.1--SASH1	1	1	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	6	1	0.25	0.0101	0.0101	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	JHOC5_OVARY	0.25	1	0.0202	TRUE	0	0	0	16	0	TRUE	ACH-000324
KS1_CENTRAL_NERVOUS_SYSTEM	MN1--PATZ1	48	26	MN1	5736	chr22:28192751:-	PATZ1	15192	chr22:31740720:-	INCL_NON_REF_SPLICE	YES	0	18	1	0.8	0.7246	0.3925	MN1->Oncogene{Bushman},chr22:28144265-28197486:-,meningioma_(disrupted_in_balanced_translocation)_1,PATZ1->POZ/BTB_and_AT_hook_containing_zinc_finger_1,chr22:31721790-31742218:-	KS1_CENTRAL_NERVOUS_SYSTEM	0.8	1	1.1171	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	SRP14--KDM6A	35	40	SRP14	3852	chr15:40328538:-	KDM6A	24942	chrX:44935942:+	INCL_NON_REF_SPLICE	YES	534	0	0.12	1	0.5283	0.6038	SRP14->chr15:40327940-40331389:-,signal_recognition_particle_14kDa,KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A	KS1_CENTRAL_NERVOUS_SYSTEM	0.12	1	1.1321	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	KDM4A--STPG1	42	3	KDM4A	1095	chr1:44115923:+	STPG1	33146	chr1:24727946:-	ONLY_REF_SPLICE	YES	1	4	0.98	0.92	0.634	0.0453	KDM4A->chr1:44115829-44171186:+,lysine_demethylase_4A,STPG1->chr1:24683489-24743424:-,sperm_tail_PG-rich_repeat_containing_1	KS1_CENTRAL_NERVOUS_SYSTEM	0.92	0.98	0.6793	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	USP12--POLR1D	20	6	USP12	1305	chr13:27745729:-	POLR1D	19669	chr13:28222516:+	ONLY_REF_SPLICE	YES	6	94	0.81	0.22	0.3019	0.0906	USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,POLR1D->chr13:28194903-28241548:+,polymerase_(RNA)_I_subunit_D	KS1_CENTRAL_NERVOUS_SYSTEM	0.22	0.81	0.3925	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	USP12--POLR1D	8	6	USP12	1305	chr13:27745729:-	POLR1D	16184	chr13:28195474:+	ONLY_REF_SPLICE	YES	6	10	0.7	0.58	0.1208	0.0906	USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,POLR1D->chr13:28194903-28241548:+,polymerase_(RNA)_I_subunit_D	KS1_CENTRAL_NERVOUS_SYSTEM	0.58	0.7	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	ZNRF3--TTC28	9	1	ZNRF3	1475	chr22:29280054:+	TTC28	23238	chr22:28702631:-	ONLY_REF_SPLICE	YES	2	3	0.83	0.77	0.1359	0.0151	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	KS1_CENTRAL_NERVOUS_SYSTEM	0.77	0.83	0.151	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	THYN1--SPATA19	7	6	THYN1	4096	chr11:134120169:-	SPATA19	9991	chr11:133714535:-	ONLY_REF_SPLICE	YES	52	0	0.2	1	0.1057	0.0906	THYN1->chr11:134118173-134123264:-,thymocyte_nuclear_protein_1,SPATA19->chr11:133710526-133715433:-,spermatogenesis_associated_19	KS1_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.1963	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	STPG1--KDM4A	6	0	STPG1	4261	chr1:24740164:-	KDM4A	24099	chr1:44118808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0906	0	STPG1->chr1:24683489-24743424:-,sperm_tail_PG-rich_repeat_containing_1,KDM4A->chr1:44115829-44171186:+,lysine_demethylase_4A	KS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	MN1--PATZ1	5	2	MN1	5736	chr22:28192751:-	PATZ1	16966	chr22:31738946:-	ONLY_REF_SPLICE	YES	0	39	1	0.15	0.0755	0.0302	MN1->Oncogene{Bushman},chr22:28144265-28197486:-,meningioma_(disrupted_in_balanced_translocation)_1,PATZ1->POZ/BTB_and_AT_hook_containing_zinc_finger_1,chr22:31721790-31742218:-	KS1_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.1057	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	THYN1--SPATA19	4	6	THYN1	4096	chr11:134120169:-	SPATA19	9441	chr11:133715085:-	ONLY_REF_SPLICE	YES	52	0	0.16	1	0.0604	0.0906	THYN1->chr11:134118173-134123264:-,thymocyte_nuclear_protein_1,SPATA19->chr11:133710526-133715433:-,spermatogenesis_associated_19	KS1_CENTRAL_NERVOUS_SYSTEM	0.16	1	0.151	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	USP12--POLR1D	1	5	USP12	1305	chr13:27745729:-	POLR1D	22412	chr13:28239823:+	ONLY_REF_SPLICE	YES	6	119	0.5	0.05	0.0151	0.0755	USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,POLR1D->chr13:28194903-28241548:+,polymerase_(RNA)_I_subunit_D	KS1_CENTRAL_NERVOUS_SYSTEM	0.05	0.5	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	CCPG1--GNAS	2	0	CCPG1	1290	chr15:55700419:-	GNAS	40795	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	GTEx&tcga_normals:1/3694=0.03%,CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	HUWE1--TOP2A	2	0	HUWE1	49981	chrX:53590707:-	TOP2A	99031	chr17:38547892:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,TOP2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38544768-38574202:-,topoisomerase_(DNA)_II_alpha	KS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	YWHAE--TRPC1	2	0	YWHAE	1332	chr17:1303341:-	TRPC1	15878	chr3:142455221:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,TRPC1->chr3:142442916-142526730:+,transient_receptor_potential_cation_channel_subfamily_C_member_1	KS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	MN1--AFF2	1	1	MN1	5736	chr22:28192751:-	AFF2	15220	chrX:147733520:+	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0151	0.0151	MN1->Oncogene{Bushman},chr22:28144265-28197486:-,meningioma_(disrupted_in_balanced_translocation)_1,AFF2->AF4/FMR2_family_member_2,chrX:147582139-148082193:+	KS1_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000631
CALU1_LUNG	GPR180--GPC6	17	19	GPR180	3530	chr13:95264644:+	GPC6	25421	chr13:94938603:+	ONLY_REF_SPLICE	YES	77	63	0.32	0.36	0.191	0.2135	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Lung=1},GPR180->G_protein-coupled_receptor_180,chr13:95254157-95286899:+,GPC6->chr13:93879095-95059655:+,glypican_6	CALU1_LUNG	0.32	0.36	0.4045	TRUE	0	0	0	2	0	TRUE	ACH-000511
CALU1_LUNG	PTPRH--HSPBP1	5	4	PTPRH	7774	chr19:55711604:-	HSPBP1	26452	chr19:55777654:-	ONLY_REF_SPLICE	YES	6	161	0.6	0.05	0.0562	0.0449	LOCAL_REARRANGEMENT:-:[52725],PTPRH->Oncogene{Bushman},chr19:55692616-55720874:-,protein_tyrosine_phosphatase,_receptor_type_H,HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-	CALU1_LUNG	0.05	0.6	0.1011	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	DHRS7B--USP22	3	0	DHRS7B	2421	chr17:21030304:+	USP22	20384	chr17:20931987:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_INVERSION:+:-:[79604],DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22	CALU1_LUNG	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	HSP90AB1--CAP1	3	0	HSP90AB1	4259	chr6:44218082:+	CAP1	14151	chr1:40525048:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+	CALU1_LUNG	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	CENPN--EXOC7	2	0	CENPN	3129	chr16:81045715:+	EXOC7	23039	chr17:74094099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CENPN->centromere_protein_N,chr16:81040103-81066719:+,EXOC7->chr17:74077087-74117657:-,exocyst_complex_component_7	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	FADS2--TMEM258	2	0	FADS2	1049	chr11:61560500:+	TMEM258	29821	chr11:61558074:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[178],FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,TMEM258->chr11:61535973-61560274:-,transmembrane_protein_258	CALU1_LUNG	1	1	0.0225	TRUE	0	2	0	5	2	TRUE	ACH-000511
CALU1_LUNG	HMGA2--ATF7	2	0	HMGA2	5315	chr12:66232349:+	ATF7	28610	chr12:53994805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	KIRREL3--GNAS	2	0	KIRREL3	2916	chr11:126870351:-	GNAS	44048	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Nucleus_accumbens_(basal_ganglia)=1},KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila),GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	MPRIP--CDRT4	2	0	MPRIP	1427	chr17:16946285:+	CDRT4	56776	chr17:15341517:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,CDRT4->CMT1A_duplicated_region_transcript_4,chr17:15339332-15406922:-	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	NRIP1--USP25	2	0	NRIP1	2336	chr21:16415816:-	USP25	39748	chr21:17236587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Cells_-_Transformed_fibroblasts=1},NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,USP25->chr21:17102344-17252377:+,ubiquitin_specific_peptidase_25	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	PARL--MTG2	2	0	PARL	4598	chr3:183580541:-	MTG2	16214	chr20:60768472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	PARL->chr3:183547173-183602721:-,presenilin_associated_rhomboid_like,MTG2->chr20:60758085-60778624:+,mitochondrial_ribosome_associated_GTPase_2	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	CALU1_LUNG	1	1	0.0225	TRUE	0	1	0	17	0	TRUE	ACH-000511
CALU1_LUNG	SLC38A2--KANSL2	2	0	SLC38A2	3092	chr12:46764559:-	KANSL2	27505	chr12:49048843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	MYLK2--HCK	1	1	MYLK2	7711	chr20:30418692:+	HCK	15231	chr20:30642019:+	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0112	0.0112	MYLK2->chr20:30407111-30422492:+,myosin_light_chain_kinase_2,HCK->HCK_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr20:30639991-30689659:+	CALU1_LUNG	0.25	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	PLCB4--PLCB1	1	1	PLCB4	2500	chr20:9076989:+	PLCB1	91111	chr20:8942843:+	ONLY_REF_SPLICE	YES	40	0	0.05	1	0.0112	0.0112	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	CALU1_LUNG	0.05	1	0.0224	TRUE	0	1	0	2	1	TRUE	ACH-000511
HUG1N_STOMACH	UBE2R2--SH3GL2	238	45	UBE2R2	1368	chr9:33817932:+	SH3GL2	15455	chr9:17747064:+	ONLY_REF_SPLICE	YES	87	0	0.76	1	2.4322	0.4599	UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+	HUG1N_STOMACH	0.76	1	2.8921	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	DTX2P1--PRKRIP1	146	23	DTX2P1	11762	chr7:76641336:+	PRKRIP1	25356	chr7:102016270:+	ONLY_REF_SPLICE	YES	14	45	0.92	0.79	1.492	0.235	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HUG1N_STOMACH	0.79	0.92	1.727	TRUE	0	0	0	3	0	TRUE	ACH-000239
HUG1N_STOMACH	MBD3--TCF3	78	34	MBD3	4722	chr19:1584539:-	TCF3	16229	chr19:1650286:-	ONLY_REF_SPLICE	YES	97	15	0.54	0.88	0.7971	0.3475	LOCAL_REARRANGEMENT:-:[16409],MBD3->chr19:1576639-1592882:-,methyl-CpG_binding_domain_protein_3,TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3	HUG1N_STOMACH	0.54	0.88	1.1446	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	UBE2R2--SH3GL2	8	45	UBE2R2	1368	chr9:33817932:+	SH3GL2	13282	chr9:17630352:+	ONLY_REF_SPLICE	YES	87	0	0.38	1	0.0818	0.4599	UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+	HUG1N_STOMACH	0.38	1	0.5417	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	MBD3--TCF3	4	34	MBD3	4722	chr19:1584539:-	TCF3	16226	chr19:1650289:-	INCL_NON_REF_SPLICE	YES	97	15	0.28	0.72	0.0409	0.3475	LOCAL_REARRANGEMENT:-:[16409],MBD3->chr19:1576639-1592882:-,methyl-CpG_binding_domain_protein_3,TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3	HUG1N_STOMACH	0.28	0.72	0.3884	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	UBE2R2--SH3GL2	5	30	UBE2R2	1368	chr9:33817932:+	SH3GL2	17614	chr9:17761435:+	ONLY_REF_SPLICE	YES	87	1	0.29	0.97	0.0511	0.3066	UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+	HUG1N_STOMACH	0.29	0.97	0.3577	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	DTX2P1--PRKRIP1	3	23	DTX2P1	14033	chr7:76645172:+	PRKRIP1	24297	chr7:102006465:+	INCL_NON_REF_SPLICE	YES	24	55	0.52	0.32	0.0307	0.235	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HUG1N_STOMACH	0.32	0.52	0.2657	TRUE	0	0	0	2	0	TRUE	ACH-000239
HUG1N_STOMACH	DTX2P1--PRKRIP1	3	23	DTX2P1	19696	chr7:76673095:+	PRKRIP1	24297	chr7:102006465:+	INCL_NON_REF_SPLICE	YES	0	55	1	0.32	0.0307	0.235	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HUG1N_STOMACH	0.32	1	0.2657	TRUE	0	0	0	2	0	TRUE	ACH-000239
HUG1N_STOMACH	MBD3--TCF3	1	18	MBD3	4722	chr19:1584539:-	TCF3	17340	chr19:1646426:-	ONLY_REF_SPLICE	YES	97	82	0.16	0.19	0.0102	0.184	LOCAL_REARRANGEMENT:-:[16409],MBD3->chr19:1576639-1592882:-,methyl-CpG_binding_domain_protein_3,TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3	HUG1N_STOMACH	0.16	0.19	0.1942	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HUG1N_STOMACH	1	1	0.0204	TRUE	0	7	0	19	1	TRUE	ACH-000239
HUG1N_STOMACH	DANCR--SNX5	2	0	DANCR	1530	chr4:53579126:+	SNX5	10453	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	7	0	TRUE	ACH-000239
HUG1N_STOMACH	EHF--PDHX	2	0	EHF	1136	chr11:34642775:+	PDHX	27853	chr11:35006117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	EPS8--DERA	2	0	EPS8	3576	chr12:15942095:-	DERA	39639	chr12:16109870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[28843],EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase	HUG1N_STOMACH	1	1	0.0204	TRUE	0	4	0	3	0	TRUE	ACH-000239
HUG1N_STOMACH	FLOT1--ACPT	2	0	FLOT1	3576	chr6:30707935:-	ACPT	11751	chr19:51295330:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	FLOT1->chr6:30695486-30710510:-,flotillin_1,ACPT->acid_phosphatase,_testicular,chr19:51293672-51298481:+	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	NOC4L--ONECUT3	2	0	NOC4L	5448	chr12:132633440:+	ONECUT3	14568	chr19:1775152:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,ONECUT3->chr19:1752372-1780987:+,one_cut_homeobox_3	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	PRDM16--PEX10	2	0	PRDM16	1129	chr1:2985860:+	PEX10	34165	chr1:2341890:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	PRDM16->Oncogene{Bushman},PR_domain_16,chr1:2985732-3355185:+,PEX10->chr1:2336236-2345236:-,peroxisomal_biogenesis_factor_10	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	UBR5--AZIN1	2	0	UBR5	1669	chr8:103424401:-	AZIN1	63524	chr8:103870378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	4	0	TRUE	ACH-000239
HUG1N_STOMACH	hsa-mir-1199--SAMD1	2	0	hsa-mir-1199	2342	chr19:14184689:+	SAMD1	8202	chr19:14200174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_INVERSION:+:-:[12778],hsa-mir-1199->chr19:14183348-14185874:+,SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000239
SNU761_LIVER	MYH9--RP5-1119A7.14	146	41	MYH9	38060	chr22:36681167:-	RP5-1119A7.14	45756	chr22:36841654:-	ONLY_REF_SPLICE	YES	2321	0	0.07	1	1.1886	0.3338	LOCAL_REARRANGEMENT:-:[57382],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,RP5-1119A7.14->chr22:36841445-36850991:-	SNU761_LIVER	0.07	1	1.5224	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	LINC00623--SRGAP2B	19	2	LINC00623	2231	chr1:144340526:-	SRGAP2B	23948	chr1:143915700:+	ONLY_REF_SPLICE	YES	137	11	0.13	0.66	0.1547	0.0163	LINC00623->chr1:144275918-144341756:-,long_intergenic_non-protein_coding_RNA_623,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	SNU761_LIVER	0.13	0.66	0.171	TRUE	0	2	0	1	2	TRUE	ACH-000537
SNU761_LIVER	CHKA--GRM5	19	1	CHKA	1617	chr11:67888295:-	GRM5	34048	chr11:88301160:-	ONLY_REF_SPLICE	YES	57	0	0.26	1	0.1547	0.0081	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	SNU761_LIVER	0.26	1	0.1628	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	ZNF19--AP1G1	17	0	ZNF19	1197	chr16:71598796:-	AP1G1	50201	chr16:71768610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1384	0	ZNF19->chr16:71498453-71598992:-,zinc_finger_protein_19,AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-	SNU761_LIVER	1	1	0.1384	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	RP11-973F15.1--RP11-94A24.1	11	3	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0895	0.0244	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	SNU761_LIVER	1	1	0.1139	TRUE	0	2	0	7	2	TRUE	ACH-000537
SNU761_LIVER	FGFR1--FSIP1	10	3	FGFR1	9195	chr8:38314874:-	FSIP1	43648	chr15:40005782:-	ONLY_REF_SPLICE	YES	71	0	0.15	1	0.0814	0.0244	FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1,FSIP1->chr15:39892232-40075031:-,fibrous_sheath_interacting_protein_1	SNU761_LIVER	0.15	1	0.1058	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	STAU2--MYBL1	10	3	STAU2	27314	chr8:74439926:-	MYBL1	46341	chr8:67488610:-	ONLY_REF_SPLICE	YES	22	33	0.37	0.28	0.0814	0.0244	STAU2->chr8:74332604-74659943:-,staufen_double-stranded_RNA_binding_protein_2,MYBL1->MYB_proto-oncogene_like_1,Oncogene{Bushman},chr8:67474410-67526482:-	SNU761_LIVER	0.28	0.37	0.1058	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	MAML2--ENPP7P8	9	3	MAML2	2798	chr11:96074547:-	ENPP7P8	16185	chr11:71425421:+	ONLY_REF_SPLICE	YES	5	0	0.71	1	0.0733	0.0244	MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,ENPP7P8->chr11:71422786-71492229:+,ectonucleotide_pyrophosphatase/phosphodiesterase_7_pseudogene_8	SNU761_LIVER	0.71	1	0.0977	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	TAOK1--OLFML2A	9	3	TAOK1	1561	chr17:27718042:+	OLFML2A	40739	chr9:127549254:+	ONLY_REF_SPLICE	YES	14	33	0.46	0.27	0.0733	0.0244	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,OLFML2A->chr9:127539437-127577164:+,olfactomedin_like_2A	SNU761_LIVER	0.27	0.46	0.0977	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	LINC00623--SRGAP2B	3	2	LINC00623	2231	chr1:144340526:-	SRGAP2B	23941	chr1:143915693:+	INCL_NON_REF_SPLICE	YES	137	12	0.04	0.29	0.0244	0.0163	LINC00623->chr1:144275918-144341756:-,long_intergenic_non-protein_coding_RNA_623,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	SNU761_LIVER	0.04	0.29	0.0407	TRUE	0	2	0	1	2	TRUE	ACH-000537
SNU761_LIVER	STAU2--MYBL1	3	2	STAU2	23792	chr8:74464247:-	MYBL1	46341	chr8:67488610:-	ONLY_REF_SPLICE	YES	34	33	0.13	0.13	0.0244	0.0163	STAU2->chr8:74332604-74659943:-,staufen_double-stranded_RNA_binding_protein_2,MYBL1->MYB_proto-oncogene_like_1,Oncogene{Bushman},chr8:67474410-67526482:-	SNU761_LIVER	0.13	0.13	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	ATAD2--DERL1	2	0	ATAD2	5205	chr8:124392769:-	DERL1	40099	chr8:124035019:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,DERL1->chr8:124025404-124054663:-,derlin_1	SNU761_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	IKZF2--SLC39A10	2	0	IKZF2	5217	chr2:214012432:-	SLC39A10	33995	chr2:196544756:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10	SNU761_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	MOSPD2--CAPZB	2	0	MOSPD2	1318	chrX:14891880:+	CAPZB	27457	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	MOSPD2->chrX:14891563-14940449:+,motile_sperm_domain_containing_2,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	SNU761_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	NBR2--BRCA1	2	0	NBR2	1161	chr17:41277787:+	BRCA1	29133	chr17:41234592:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	LOCAL_INVERSION:+:-:[127],NBR2->chr17:41277627-41305688:+,neighbor_of_BRCA1_gene_2_(non-protein_coding),BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	SNU761_LIVER	1	1	0.0163	TRUE	0	0	0	2	0	TRUE	ACH-000537
SNU761_LIVER	RNF213--GGA1	2	0	RNF213	41437	chr17:78325603:+	GGA1	88639	chr22:38014455:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,GGA1->Oncogene{Bushman},chr22:38004481-38029571:+,golgi-associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_1	SNU761_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	SMG6--GTPBP10	2	0	SMG6	1139	chr17:2206927:-	GTPBP10	52674	chr7:90001469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	SNU761_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	SUCLG2--RP11-81N13.1	2	0	SUCLG2	2254	chr3:67659879:-	RP11-81N13.1	23581	chr3:67797195:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	LOCAL_INVERSION:-:+:[83],SUCLG2->chr3:67410884-67705038:-,succinate-CoA_ligase_GDP-forming_beta_subunit,RP11-81N13.1->chr3:67705121-67998137:+	SNU761_LIVER	1	1	0.0163	TRUE	0	1	0	2	0	TRUE	ACH-000537
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	ZNF83--SULT2B1	154	17	ZNF83	1054	chr19:53193696:-	SULT2B1	23742	chr19:49090486:+	ONLY_REF_SPLICE	YES	5	0	0.97	1	2.0176	0.2227	ZNF83->chr19:53097313-53193749:-,zinc_finger_protein_83,SULT2B1->chr19:49055332-49102682:+,sulfotransferase_family_2B_member_1	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.97	1	2.2403	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	KDM4C--RP11-204M4.2	142	51	KDM4C	2698	chr9:6758203:+	RP11-204M4.2	45593	chr9:41963942:-	ONLY_REF_SPLICE	YES	7	1	0.96	0.99	1.8604	0.6682	KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,RP11-204M4.2->chr9:41961615-42019580:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.96	0.99	2.5286	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	RAD54B--KIAA1429	53	4	RAD54B	1109	chr8:95487229:-	KIAA1429	41722	chr8:95518945:-	ONLY_REF_SPLICE	YES	1	30	0.98	0.66	0.6944	0.0524	LOCAL_REARRANGEMENT:-:[12584],RAD54B->RAD54_homolog_B_(S._cerevisiae),chr8:95384188-95487337:-,KIAA1429->KIAA1429,chr8:95499921-95565757:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.66	0.98	0.7468	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	ZNF415--CARD8	11	12	ZNF415	4705	chr19:53625915:-	CARD8	25463	chr19:48725112:-	ONLY_REF_SPLICE	YES	20	7	0.53	0.77	0.1441	0.1572	ZNF415->chr19:53611132-53636330:-,zinc_finger_protein_415,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.53	0.77	0.3013	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	RBMS3--ANO10	11	2	RBMS3	17979	chr3:29977687:+	ANO10	57903	chr3:43408466:-	ONLY_REF_SPLICE	YES	3	13	0.81	0.5	0.1441	0.0262	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,ANO10->anoctamin_10,chr3:43396351-43733086:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.5	0.81	0.1703	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	KRT8--CCL14	5	13	KRT8	3529	chr12:53320196:-	CCL14	17054	chr17:34328707:-	INCL_NON_REF_SPLICE	YES	31	0	0.37	1	0.0655	0.1703	KRT8->chr12:53290977-53343738:-,keratin_8,CCL14->C-C_motif_chemokine_ligand_14,chr17:34310327-34329100:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.37	1	0.2358	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	ANO10--RBMS3	6	1	ANO10	24430	chr3:43474103:-	RBMS3	50984	chr3:30029634:+	ONLY_REF_SPLICE	YES	13	4	0.35	0.64	0.0786	0.0131	ANO10->anoctamin_10,chr3:43396351-43733086:-,RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.35	0.64	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	ZNF415--CARD8	2	15	ZNF415	4963	chr19:53625657:-	CARD8	25463	chr19:48725112:-	ONLY_REF_SPLICE	YES	29	7	0.37	0.71	0.0262	0.1965	ZNF415->chr19:53611132-53636330:-,zinc_finger_protein_415,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.37	0.71	0.2227	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	RDH13--TSEN34	5	2	RDH13	9547	chr19:55568021:-	TSEN34	25260	chr19:54695572:+	ONLY_REF_SPLICE	YES	17	39	0.29	0.15	0.0655	0.0262	RDH13->chr19:55550476-55582659:-,retinol_dehydrogenase_13_(all-trans/9-cis),TSEN34->chr19:54693789-54697585:+,tRNA_splicing_endonuclease_subunit_34	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.15	0.29	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	CAPZB--UCHL1-AS1	4	0	CAPZB	1137	chr1:19811930:-	UCHL1-AS1	21598	chr4:41223501:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0524	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,UCHL1-AS1->UCHL1_antisense_RNA_1_(head_to_head),chr4:41222091-41258744:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	CHID1--AP2A2	2	0	CHID1	11443	chr11:899340:-	AP2A2	37365	chr11:977095:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_INVERSION:-:+:[9836],CHID1->chitinase_domain_containing_1,chr11:867357-915058:-,AP2A2->adaptor_related_protein_complex_2_alpha_2_subunit,chr11:924894-1012239:+	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	PRR12--SLC6A16	2	0	PRR12	9866	chr19:50105175:+	SLC6A16	26602	chr19:49797810:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	PRR12->chr19:50094900-50129696:+,proline_rich_12,SLC6A16->chr19:49792895-49828482:-,solute_carrier_family_6_member_16	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	PRR12--SLC6A16	2	0	PRR12	9866	chr19:50105175:+	SLC6A16	27127	chr19:49797285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	PRR12->chr19:50094900-50129696:+,proline_rich_12,SLC6A16->chr19:49792895-49828482:-,solute_carrier_family_6_member_16	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	RP11-453F18__B.1--LCOR	2	0	RP11-453F18__B.1	2496	chrX:130959250:-	LCOR	29813	chr10:98718169:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	RP11-453F18__B.1->chrX:130836678-130964671:-,LCOR->chr10:98592017-98740800:+,ligand_dependent_nuclear_receptor_corepressor	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	PRICKLE2--MAGI1	1	1	PRICKLE2	1994	chr3:64430159:-	MAGI1	35559	chr3:65479306:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0131	0.0131	PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2,MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	SIK3--CCBL1	1	1	SIK3	1295	chr11:116968859:-	CCBL1	41155	chr9:131607690:-	ONLY_REF_SPLICE	YES	5	19	0.29	0.1	0.0131	0.0131	SIK3->Oncogene{Bushman},SIK_family_kinase_3,chr11:116714118-116969153:-,CCBL1->chr9:131595221-131644773:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.1	0.29	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000863
YH13_CENTRAL_NERVOUS_SYSTEM	SYT1--RP11-341G23.2	8	3	SYT1	11895	chr12:79441142:+	RP11-341G23.2	28632	chr12:104051458:-	INCL_NON_REF_SPLICE	YES	7	0	0.61	1	0.1691	0.0634	SYT1->chr12:79257773-79845788:+,synaptotagmin_1,RP11-341G23.2->chr12:104048558-104051773:-	YH13_CENTRAL_NERVOUS_SYSTEM	0.61	1	0.2325	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	SYT1--RP11-341G23.3	6	2	SYT1	11895	chr12:79441142:+	RP11-341G23.3	28319	chr12:104063182:-	INCL_NON_REF_SPLICE	YES	7	0	0.53	1	0.1268	0.0423	SYT1->chr12:79257773-79845788:+,synaptotagmin_1,RP11-341G23.3->chr12:104062353-104063184:-	YH13_CENTRAL_NERVOUS_SYSTEM	0.53	1	0.1691	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	ATP2B4--C15orf60	4	3	ATP2B4	18082	chr1:203689868:+	C15orf60	35212	chr15:73832826:+	ONLY_REF_SPLICE	YES	14	0	0.33	1	0.0845	0.0634	ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,C15orf60->chr15:73735499-73852355:+	YH13_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.1479	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	MRPS22--RIN3	4	0	MRPS22	6545	chr3:139000677:+	RIN3	24158	chr14:93022096:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0845	0	MRPS22->chr3:138724648-139076065:+,mitochondrial_ribosomal_protein_S22,RIN3->Ras_and_Rab_interactor_3,chr14:92980118-93155339:+	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	RBBP4--RTN4	4	0	RBBP4	11114	chr1:33146174:+	RTN4	24766	chr2:55277427:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0	RBBP4->chr1:33116743-33151812:+,retinoblastoma_binding_protein_4,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	IFT52--RPL13AP5	3	0	IFT52	15873	chr20:42275645:+	RPL13AP5	19573	chr10:98510453:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	IFT52->chr20:42219571-42275936:+,intraflagellar_transport_52,RPL13AP5->chr10:98510045-98510675:+,ribosomal_protein_L13a_pseudogene_5	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	MAPK12--TMED10	3	0	MAPK12	6288	chr22:50693440:-	TMED10	18921	chr14:75643263:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	MAPK12->Oncogene{Bushman},chr22:50683879-50700254:-,mitogen-activated_protein_kinase_12,TMED10->chr14:75598173-75643334:-,transmembrane_p24_trafficking_protein_10	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	NLRC5--C4orf46	3	0	NLRC5	1111	chr16:57023507:+	C4orf46	57163	chr4:159590920:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0	NLRC5->NLR_family,_CARD_domain_containing_5,chr16:57023397-57117443:+,C4orf46->chr4:159587831-159593407:-,chromosome_4_open_reading_frame_46	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	PSMB8--VEPH1	3	0	PSMB8	1738	chr6:32811743:-	VEPH1	28004	chr3:157081261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	PSMB8->chr6:32808494-32812480:-,proteasome_subunit_beta_8,VEPH1->Oncogene{Bushman},chr3:156977531-157251408:-,ventricular_zone_expressed_PH_domain_containing_1	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	SOX9--ZNF71	3	0	SOX9	2792	chr17:70118952:+	ZNF71	14438	chr19:57132716:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	SOX9->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SRY-box_9,chr17:70117161-70122561:+,ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	TNS1--MREG	3	0	TNS1	25441	chr2:218745621:-	MREG	61468	chr2:216811836:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0	TNS1->chr2:218664512-218867718:-,tensin_1,MREG->chr2:216809213-216898819:-,melanoregulin	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	ATP2B4--C15orf60	1	4	ATP2B4	18082	chr1:203689868:+	C15orf60	34122	chr15:73766173:+	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0211	0.0845	ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,C15orf60->chr15:73735499-73852355:+	YH13_CENTRAL_NERVOUS_SYSTEM	0.26	1	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	CHD2--SPIN3	2	0	CHD2	6529	chr15:93444529:+	SPIN3	60438	chrX:57021382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SPIN3->chrX:57002803-57021970:-,spindlin_family_member_3	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	GALNT1--RAP1A	2	0	GALNT1	1746	chr18:33161826:+	RAP1A	25989	chr1:112233956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1,RAP1A->Oncogene{Bushman},RAP1A,_member_of_RAS_oncogene_family,chr1:112084840-112259313:+	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	GGCT--AHR	2	0	GGCT	3120	chr7:30544185:-	AHR	13481	chr7:17362125:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	GGCT->chr7:30536237-30591095:-,gamma-glutamylcyclotransferase,AHR->aryl_hydrocarbon_receptor,chr7:17338246-17385776:+	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	MARK3--EIF5	2	0	MARK3	14669	chr14:103932779:+	EIF5	38544	chr14:103807300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_REARRANGEMENT:+:[40367],MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3,EIF5->chr14:103799881-103811362:+,eukaryotic_translation_initiation_factor_5	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	MIR29B1--AGK	2	0	MIR29B1	2201	chr7:130596869:-	AGK	29242	chr7:141336760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	MIR29B1->chr7:130561495-130598069:-,microRNA_29b-1,AGK->acylglycerol_kinase,chr7:141250989-141355044:+	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	SNX13--TAX1BP1	2	0	SNX13	1218	chr7:17979907:-	TAX1BP1	53382	chr7:27824782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	SNX13->chr7:17830385-17980124:-,sorting_nexin_13,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	ZNF33A--TMEFF1	2	0	ZNF33A	3703	chr10:38306314:+	TMEFF1	18422	chr9:103261047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	ZNF33A->chr10:38299578-38354016:+,zinc_finger_protein_33A,TMEFF1->chr9:103204560-103339918:+,transmembrane_protein_with_EGF_like_and_two_follistatin_like_domains_1	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
SF295_CENTRAL_NERVOUS_SYSTEM	AP001462.6--SUV420H1	26	23	AP001462.6	1190	chr11:64546615:+	SUV420H1	12297	chr11:67942650:-	INCL_NON_REF_SPLICE	YES	1	66	0.98	0.43	0.2839	0.2512	AP001462.6->chr11:64546426-64546877:+,SUV420H1->chr11:67922330-67981295:-	SF295_CENTRAL_NERVOUS_SYSTEM	0.43	0.98	0.5351	TRUE	0	0	0	1	0	TRUE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	EIF1--PPIA	4	1	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	55	0	0.08	1	0.0437	0.0109	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	SF295_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.0546	TRUE	0	0	0	7	0	TRUE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	EXPH5--TEX12	4	0	EXPH5	1321	chr11:108464145:-	TEX12	24938	chr11:112041142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0437	0	EXPH5->chr11:108376158-108464465:-,exophilin_5,TEX12->chr11:112038095-112043282:+,testis_expressed_12	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	EXPH5--TEX12	4	0	EXPH5	1321	chr11:108464145:-	TEX12	23851	chr11:112039968:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0437	0	EXPH5->chr11:108376158-108464465:-,exophilin_5,TEX12->chr11:112038095-112043282:+,testis_expressed_12	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	VIM--ACTB	4	0	VIM	2136	chr10:17271393:+	ACTB	15629	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0437	TRUE	0	0	0	9	0	TRUE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	CTC-329D1.2--UIMC1	2	0	CTC-329D1.2	1257	chr5:139780696:-	UIMC1	16591	chr5:176385155:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	CTC-329D1.2->chr5:139750476-139780952:-,UIMC1->chr5:176332006-176449634:-,ubiquitin_interaction_motif_containing_1	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	TCFL5--OVOL2	1	1	TCFL5	5786	chr20:61485368:-	OVOL2	21552	chr20:17937681:-	ONLY_REF_SPLICE	YES	49	0	0.04	1	0.0109	0.0109	TCFL5->chr20:61472467-61493115:-,transcription_factor_like_5,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	SF295_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000376
OAW42_OVARY	AP2B1--RP11-104J23.1	116	83	AP2B1	28109	chr17:34037339:+	RP11-104J23.1	38859	chr17:34337060:+	ONLY_REF_SPLICE	YES	484	0	0.29	1	1.1646	0.8333	AP2B1->adaptor_related_protein_complex_2_beta_1_subunit,chr17:33905065-34053436:+,RP11-104J23.1->chr17:34328458-34338658:+	OAW42_OVARY	0.29	1	1.9979	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	PSMD14--MFSD11	90	55	PSMD14	2882	chr2:162173080:+	MFSD11	34087	chr17:74763468:+	ONLY_REF_SPLICE	YES	365	45	0.28	0.76	0.9035	0.5522	PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14,MFSD11->chr17:74731947-74777531:+,major_facilitator_superfamily_domain_containing_11	OAW42_OVARY	0.28	0.76	1.4557	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	AGPAT3--XXbac-B33L19.4	76	25	AGPAT3	5489	chr21:45323900:+	XXbac-B33L19.4	33242	chr22:20331888:-	ONLY_REF_SPLICE	YES	82	0	0.55	1	0.763	0.251	AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,XXbac-B33L19.4->chr22:20330726-20331888:-	OAW42_OVARY	0.55	1	1.014	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	RP11-381N20.2--RP11-93L9.1	54	57	RP11-381N20.2	2449	chr4:124418099:+	RP11-93L9.1	7606	chr4:124573942:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.5421	0.5722	RP11-381N20.2->chr4:124411423-124443261:+,RP11-93L9.1->chr4:124571422-124851561:+	OAW42_OVARY	0.99	1	1.1143	TRUE	0	1	0	1	1	TRUE	ACH-000704
OAW42_OVARY	METTL10--FAM175B	35	30	METTL10	4555	chr10:126463244:-	FAM175B	20729	chr10:126517325:+	ONLY_REF_SPLICE	YES	109	111	0.37	0.37	0.3514	0.3012	LOCAL_INVERSION:-:+:[9915],METTL10->chr10:126436718-126480439:-,methyltransferase_like_10,FAM175B->chr10:126490354-126525239:+,family_with_sequence_similarity_175_member_B	OAW42_OVARY	0.37	0.37	0.6526	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	RP11-381N20.2--RP11-93L9.1	25	53	RP11-381N20.2	2449	chr4:124418099:+	RP11-93L9.1	7610	chr4:124573946:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.251	0.5321	RP11-381N20.2->chr4:124411423-124443261:+,RP11-93L9.1->chr4:124571422-124851561:+	OAW42_OVARY	0.99	1	0.7831	TRUE	0	1	0	1	1	TRUE	ACH-000704
OAW42_OVARY	CSNK1G2--TRAF7	33	3	CSNK1G2	1230	chr19:1941417:+	TRAF7	25917	chr16:2225112:+	ONLY_REF_SPLICE	YES	0	258	1	0.12	0.3313	0.0301	CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,TRAF7->Oncogene{Bushman},TNF_receptor_associated_factor_7,chr16:2205699-2228130:+	OAW42_OVARY	0.12	1	0.3614	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	BCL7A--WDR66	16	7	BCL7A	5941	chr12:122473333:+	WDR66	26546	chr12:122386890:+	ONLY_REF_SPLICE	YES	106	6	0.18	0.79	0.1606	0.0703	LOCAL_REARRANGEMENT:+:[15495],BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+,WDR66->WD_repeat_domain_66,chr12:122355768-122441833:+	OAW42_OVARY	0.18	0.79	0.2309	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	SPAG1--VPS13B	13	1	SPAG1	12651	chr8:101225656:+	VPS13B	89867	chr8:100847425:+	ONLY_REF_SPLICE	YES	14	23	0.5	0.38	0.1305	0.01	SPAG1->chr8:101170134-101271506:+,sperm_associated_antigen_1,VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast)	OAW42_OVARY	0.38	0.5	0.1405	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	RP11-381N20.2--RP11-93L9.1	5	17	RP11-381N20.2	2449	chr4:124418099:+	RP11-93L9.1	8722	chr4:124582908:+	ONLY_REF_SPLICE	YES	1	8	0.96	0.73	0.0502	0.1707	RP11-381N20.2->chr4:124411423-124443261:+,RP11-93L9.1->chr4:124571422-124851561:+	OAW42_OVARY	0.73	0.96	0.2209	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	KDM1A--LMNB2	9	0	KDM1A	8985	chr1:23384052:+	LMNB2	33232	chr19:2432485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0904	0	KDM1A->chr1:23345941-23410182:+,lysine_demethylase_1A,LMNB2->chr19:2427636-2456994:-,lamin_B2	OAW42_OVARY	1	1	0.0904	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	ZNF619--ADAMTS9	6	6	ZNF619	3733	chr3:40524195:+	ADAMTS9	15780	chr3:64644467:-	ONLY_REF_SPLICE	YES	7	93	0.63	0.11	0.0602	0.0602	{Klijn_CCL:Ovary=1},ZNF619->chr3:40518604-40531727:+,zinc_finger_protein_619,ADAMTS9->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_9,chr3:64501333-64673676:-	OAW42_OVARY	0.11	0.63	0.1204	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	DIP2C--SFMBT2	4	10	DIP2C	1250	chr10:735434:-	SFMBT2	57908	chr10:7327916:-	ONLY_REF_SPLICE	YES	18	0	0.44	1	0.0402	0.1004	{Klijn_CCL:Ovary=1},DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,SFMBT2->Oncogene{Bushman},Scm-like_with_four_mbt_domains_2,chr10:7200586-7453450:-	OAW42_OVARY	0.44	1	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	ZDHHC18--PIGV	4	7	ZDHHC18	8188	chr1:27180316:+	PIGV	17525	chr1:27117250:+	ONLY_REF_SPLICE	YES	125	11	0.08	0.5	0.0402	0.0703	LOCAL_REARRANGEMENT:+:[28312],ZDHHC18->Oncogene{Bushman},chr1:27153201-27184093:+,zinc_finger_DHHC-type_containing_18,PIGV->chr1:27113963-27124889:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_V	OAW42_OVARY	0.08	0.5	0.1105	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	RP11-498C9.2--RPLP1	4	1	RP11-498C9.2	1710	chr17:79801750:+	RPLP1	4896	chr15:69745224:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0.01	RP11-498C9.2->chr17:79801041-79801834:+,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	OAW42_OVARY	1	1	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	FSD1L--SLC44A1	3	2	FSD1L	18936	chr9:108301632:+	SLC44A1	31429	chr9:108061501:+	ONLY_REF_SPLICE	YES	4	7	0.56	0.42	0.0301	0.0201	LOCAL_REARRANGEMENT:+:[8625],FSD1L->chr9:108210077-108314714:+,fibronectin_type_III_and_SPRY_domain_containing_1_like,SLC44A1->chr9:108006903-108201452:+,solute_carrier_family_44_member_1	OAW42_OVARY	0.42	0.56	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	TMEM170B--RP3-510L9.1	3	2	TMEM170B	1670	chr6:11538607:+	RP3-510L9.1	18186	chr6:11258722:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0301	0.0201	TMEM170B->chr6:11537938-11583757:+,transmembrane_protein_170B,RP3-510L9.1->chr6:11173685-11259332:+	OAW42_OVARY	0.83	1	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	RP11-498C9.2--RPLP1	3	1	RP11-498C9.2	1753	chr17:79801793:+	RPLP1	4923	chr15:69745251:+	INCL_NON_REF_SPLICE	YES	0	33	1	0.11	0.0301	0.01	RP11-498C9.2->chr17:79801041-79801834:+,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	OAW42_OVARY	0.11	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	MICALL1--TEX264	3	0	MICALL1	10308	chr22:38321924:+	TEX264	30210	chr3:51718488:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	MICALL1->MICAL_like_1,chr22:38301664-38338829:+,TEX264->chr3:51696709-51738339:+,testis_expressed_264	OAW42_OVARY	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	ZNF619--ADAMTS9	2	4	ZNF619	1891	chr3:40519494:+	ADAMTS9	15780	chr3:64644467:-	ONLY_REF_SPLICE	YES	16	93	0.27	0.06	0.0201	0.0402	{Klijn_CCL:Ovary=1},ZNF619->chr3:40518604-40531727:+,zinc_finger_protein_619,ADAMTS9->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_9,chr3:64501333-64673676:-	OAW42_OVARY	0.06	0.27	0.0603	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	AGPAT3--XXbac-B33L19.4	1	5	AGPAT3	2888	chr21:45287227:+	XXbac-B33L19.4	33242	chr22:20331888:-	ONLY_REF_SPLICE	NO	40	0	0.13	1	0.01	0.0502	AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,XXbac-B33L19.4->chr22:20330726-20331888:-	OAW42_OVARY	0.13	1	0.0602	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	ZDHHC18--PIGV	1	5	ZDHHC18	8188	chr1:27180316:+	PIGV	18660	chr1:27120604:+	ONLY_REF_SPLICE	YES	125	32	0.05	0.16	0.01	0.0502	LOCAL_REARRANGEMENT:+:[28312],ZDHHC18->Oncogene{Bushman},chr1:27153201-27184093:+,zinc_finger_DHHC-type_containing_18,PIGV->chr1:27113963-27124889:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_V	OAW42_OVARY	0.05	0.16	0.0602	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	ANXA4--RPL7A	2	0	ANXA4	10833	chr2:70033564:+	RPL7A	30186	chr9:136217095:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	ANXA4->annexin_A4,chr2:69871557-70053596:+,RPL7A->chr9:136215069-136218281:+,ribosomal_protein_L7a	OAW42_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	C17orf76-AS1--PTCD3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	OAW42_OVARY	1	1	0.0201	TRUE	0	3	0	8	0	TRUE	ACH-000704
OAW42_OVARY	CDC42SE2--CTD-2410N18.5	2	0	CDC42SE2	5200	chr5:130599859:+	CTD-2410N18.5	21445	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,CTD-2410N18.5->chr5:133502861-133561762:-	OAW42_OVARY	1	1	0.0201	TRUE	0	1	0	3	1	TRUE	ACH-000704
OAW42_OVARY	CTD-2006C1.2--UBE2D2	2	0	CTD-2006C1.2	3469	chr19:12112637:+	UBE2D2	22276	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CTD-2006C1.2->chr19:12098432-12157090:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	OAW42_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	GATAD2B--RALGPS2	2	0	GATAD2B	1243	chr1:153895209:-	RALGPS2	41229	chr1:178885465:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+	OAW42_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	RRP7A--CTNNBL1	2	0	RRP7A	1089	chr22:42915720:-	CTNNBL1	16147	chr20:36361281:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RRP7A->chr22:42905974-42915808:-,ribosomal_RNA_processing_7_homolog_A,CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+	OAW42_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	AGPAT3--XXbac-B33L19.4	1	3	AGPAT3	1160	chr21:45285226:+	XXbac-B33L19.4	33242	chr22:20331888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.01	0.0301	AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,XXbac-B33L19.4->chr22:20330726-20331888:-	OAW42_OVARY	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	RP11-381N20.2--RP11-93L9.1	1	2	RP11-381N20.2	2449	chr4:124418099:+	RP11-93L9.1	15914	chr4:124750250:+	ONLY_REF_SPLICE	YES	1	13	0.75	0.19	0.01	0.0201	RP11-381N20.2->chr4:124411423-124443261:+,RP11-93L9.1->chr4:124571422-124851561:+	OAW42_OVARY	0.19	0.75	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000704
NCIH2286_LUNG	MARK4--RP11-255H23.4	175	68	MARK4	8667	chr19:45774966:+	RP11-255H23.4	26940	chr19:24006708:-	ONLY_REF_SPLICE	YES	36	0	0.87	1	1.8476	0.7179	MARK4->Oncogene{Bushman},chr19:45582546-45808541:+,microtubule_affinity_regulating_kinase_4,RP11-255H23.4->chr19:24000401-24057503:-	NCIH2286_LUNG	0.87	1	2.5655	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	ELAVL1--FBN3	65	30	ELAVL1	4609	chr19:8045967:-	FBN3	49690	chr19:8161890:-	ONLY_REF_SPLICE	YES	322	1	0.23	0.99	0.6863	0.3167	LOCAL_REARRANGEMENT:-:[59743],ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,FBN3->chr19:8130286-8214730:-,fibrillin_3	NCIH2286_LUNG	0.23	0.99	1.003	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	GRK5--FAM45A	36	8	GRK5	1381	chr10:120967481:+	FAM45A	31990	chr10:120889027:+	ONLY_REF_SPLICE	YES	8	106	0.85	0.29	0.3801	0.0845	LOCAL_REARRANGEMENT:+:[69605],GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+,FAM45A->chr10:120863598-120897496:+,family_with_sequence_similarity_45_member_A	NCIH2286_LUNG	0.29	0.85	0.4646	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	PCNT--C21orf58	34	16	PCNT	3302	chr21:47746503:+	C21orf58	63816	chr21:47722490:-	ONLY_REF_SPLICE	YES	42	16	0.54	0.76	0.359	0.1689	LOCAL_INVERSION:+:-:[247],PCNT->chr21:47744036-47865682:+,pericentrin,C21orf58->chr21:47720095-47743789:-,chromosome_21_open_reading_frame_58	NCIH2286_LUNG	0.54	0.76	0.5279	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	C21orf58--PCNT	27	17	C21orf58	9364	chr21:47731370:-	PCNT	60937	chr21:47859996:+	ONLY_REF_SPLICE	YES	18	72	0.71	0.38	0.2851	0.1795	LOCAL_INVERSION:-:+:[247],C21orf58->chr21:47720095-47743789:-,chromosome_21_open_reading_frame_58,PCNT->chr21:47744036-47865682:+,pericentrin	NCIH2286_LUNG	0.38	0.71	0.4646	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	GRK5--FAM45A	9	6	GRK5	1381	chr10:120967481:+	FAM45A	33098	chr10:120892027:+	ONLY_REF_SPLICE	YES	8	81	0.65	0.16	0.095	0.0633	LOCAL_REARRANGEMENT:+:[69605],GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+,FAM45A->chr10:120863598-120897496:+,family_with_sequence_similarity_45_member_A	NCIH2286_LUNG	0.16	0.65	0.1583	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	ELAVL1--FBN3	2	31	ELAVL1	4609	chr19:8045967:-	FBN3	49282	chr19:8162298:-	ONLY_REF_SPLICE	YES	322	0	0.09	1	0.0211	0.3273	LOCAL_REARRANGEMENT:-:[59743],ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,FBN3->chr19:8130286-8214730:-,fibrillin_3	NCIH2286_LUNG	0.09	1	0.3484	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	NCIH2286_LUNG	1	1	0.0211	TRUE	0	6	0	16	3	TRUE	ACH-000912
NCIH2286_LUNG	HIGD1A--ANXA5	2	0	HIGD1A	2503	chr3:42835649:-	ANXA5	17315	chr4:122599105:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	HIGD1A->HIG1_hypoxia_inducible_domain_family_member_1A,chr3:42798669-42846023:-,ANXA5->annexin_A5,chr4:122589110-122618268:-	NCIH2286_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	LINC01059--EEF1D	2	0	LINC01059	1432	chr11:123325537:+	EEF1D	18598	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LINC01059->chr11:123325106-123331118:+,long_intergenic_non-protein_coding_RNA_1059,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH2286_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	MORF4L2--HNRNPH3	2	0	MORF4L2	4308	chrX:102939609:-	HNRNPH3	15769	chr10:70099197:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	MORF4L2->chrX:102930424-102943086:-,mortality_factor_4_like_2,HNRNPH3->chr10:70090931-70102948:+,heterogeneous_nuclear_ribonucleoprotein_H3	NCIH2286_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	PTCHD3P1--PFKP	2	0	PTCHD3P1	3116	chr10:29704341:+	PFKP	22441	chr10:3124580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PTCHD3P1->chr10:29698331-29776674:+,patched_domain_containing_3_pseudogene_1,PFKP->chr10:3108525-3179904:+,phosphofructokinase,_platelet	NCIH2286_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	RCC1--AC159540.1	2	0	RCC1	2175	chr1:28834672:+	AC159540.1	24725	chr2:98089511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,AC159540.1->chr2:98081083-98099107:-	NCIH2286_LUNG	1	1	0.0211	TRUE	0	0	0	2	0	TRUE	ACH-000912
NCIH2286_LUNG	SEMA3E--MON2	2	0	SEMA3E	1583	chr7:83277744:-	MON2	57028	chr12:62954271:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SEMA3E->chr7:82993222-83278326:-,semaphorin_3E,MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+	NCIH2286_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000912
HS606T_FIBROBLAST	CD63--TGFBI	86	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9654	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS606T_FIBROBLAST	1	1	0.9654	TRUE	0	0	0	14	0	TRUE	ACH-000540
HS606T_FIBROBLAST	CTB-113P19.1--FTL	4	3	CTB-113P19.1	4742	chr5:151066491:+	FTL	9972	chr19:49468589:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0449	0.0337	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	HS606T_FIBROBLAST	0.88	1	0.0786	TRUE	0	2	0	13	2	TRUE	ACH-000540
HS606T_FIBROBLAST	IGFBP5--THBS1	4	0	IGFBP5	5338	chr2:217541458:-	THBS1	22374	chr15:39882732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0	GTEx&tcga_normals:1/3694=0.03%,IGFBP5->Oncogene{Bushman},chr2:217536828-217560248:-,insulin_like_growth_factor_binding_protein_5,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS606T_FIBROBLAST	1	1	0.0449	TRUE	0	0	0	1	0	TRUE	ACH-000540
HS606T_FIBROBLAST	CTB-113P19.1--FTL	3	1	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0337	0.0112	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	HS606T_FIBROBLAST	0.67	1	0.0449	TRUE	0	2	0	13	2	TRUE	ACH-000540
HS606T_FIBROBLAST	CTGF--MT2A	3	0	CTGF	1166	chr6:132272348:-	MT2A	7582	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS606T_FIBROBLAST	1	1	0.0337	TRUE	0	0	0	3	0	TRUE	ACH-000540
HS606T_FIBROBLAST	HMGA2--MSRB3	2	0	HMGA2	5315	chr12:66232349:+	MSRB3	29738	chr12:65702309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	HS606T_FIBROBLAST	1	1	0.0225	TRUE	0	0	0	2	0	TRUE	ACH-000540
SLR26_KIDNEY	POLR2J3--IFNGR2	8	11	POLR2J3	5847	chr7:102207444:-	IFNGR2	28944	chr21:34851105:+	ONLY_REF_SPLICE	YES	396	0	0.05	1	0.0834	0.1147	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1)	SLR26_KIDNEY	0.05	1	0.1981	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	ETV6--FOXJ2	6	9	ETV6	3594	chr12:11905513:+	FOXJ2	23895	chr12:8192415:+	ONLY_REF_SPLICE	YES	19	28	0.44	0.35	0.0626	0.0939	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,FOXJ2->chr12:8185299-8208099:+,forkhead_box_J2	SLR26_KIDNEY	0.35	0.44	0.1565	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	MEIS2--MTRR	7	1	MEIS2	9838	chr15:37375972:-	MTRR	31268	chr5:7862064:+	ONLY_REF_SPLICE	YES	10	3	0.44	0.73	0.073	0.0104	MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,MTRR->5-methyltetrahydrofolate-homocysteine_methyltransferase_reductase,chr5:7851299-7906138:+	SLR26_KIDNEY	0.44	0.73	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	RP11-661P17.1--SLCO3A1	7	1	RP11-661P17.1	3525	chr15:92016546:+	SLCO3A1	15689	chr15:92459223:+	ONLY_REF_SPLICE	YES	1	41	0.89	0.16	0.073	0.0104	GTEx_FI:{Pancreas=[count:3=pct:1.7]},RP11-661P17.1->chr15:91951938-92148441:+,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	SLR26_KIDNEY	0.16	0.89	0.0834	TRUE	1	11	1	4	10	TRUE	ACH-000600
SLR26_KIDNEY	ANP32B--APP	5	0	ANP32B	8188	chr9:100773659:+	APP	24399	chr21:27394282:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	SLR26_KIDNEY	1	1	0.0521	TRUE	0	0	0	7	0	TRUE	ACH-000600
SLR26_KIDNEY	TRIM9--ZSCAN16	4	1	TRIM9	2944	chr14:51560836:-	ZSCAN16	26954	chr6:28094561:+	ONLY_REF_SPLICE	YES	41	13	0.11	0.28	0.0417	0.0104	TRIM9->chr14:51441980-51562779:-,tripartite_motif_containing_9,ZSCAN16->chr6:28092338-28097860:+,zinc_finger_and_SCAN_domain_containing_16	SLR26_KIDNEY	0.11	0.28	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	HCG4P5--SPP1	3	3	HCG4P5	1476	chr6:29910369:-	SPP1	5041	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	16	0	0.27	1	0.0313	0.0313	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR26_KIDNEY	0.27	1	0.0626	TRUE	0	1	0	4	1	TRUE	ACH-000600
SLR26_KIDNEY	ETV6--FOXJ2	1	5	ETV6	1307	chr12:11803094:+	FOXJ2	23895	chr12:8192415:+	ONLY_REF_SPLICE	YES	15	28	0.29	0.18	0.0104	0.0521	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,FOXJ2->chr12:8185299-8208099:+,forkhead_box_J2	SLR26_KIDNEY	0.18	0.29	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SLR26_KIDNEY	1	1	0.0209	TRUE	0	0	0	15	0	TRUE	ACH-000600
SLR26_KIDNEY	ARL4A--PHF14	2	0	ARL4A	1873	chr7:12727353:+	PHF14	32595	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ARL4A->ADP_ribosylation_factor_like_GTPase_4A,chr7:12726481-12730559:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SLR26_KIDNEY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	C7orf73--MEF2B	2	0	C7orf73	2153	chr7:135357554:+	MEF2B	15028	chr19:19293492:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	C7orf73->chr7:135347244-135378166:+,chromosome_7_open_reading_frame_73,MEF2B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:19256377-19303400:-,myocyte_enhancer_factor_2B	SLR26_KIDNEY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	DOCK1--ITPR1	2	0	DOCK1	44561	chr10:129202693:+	ITPR1	131700	chr3:4887823:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1	SLR26_KIDNEY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	RP11-661P17.1--SLCO3A1	1	1	RP11-661P17.1	3525	chr15:92016546:+	SLCO3A1	14431	chr15:92451732:+	ONLY_REF_SPLICE	YES	1	52	0.67	0.04	0.0104	0.0104	GTEx_FI:{Pancreas=[count:3=pct:1.7]},RP11-661P17.1->chr15:91951938-92148441:+,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	SLR26_KIDNEY	0.04	0.67	0.0208	TRUE	0	1	0	1	1	TRUE	ACH-000600
NCIH2077_LUNG	INPP4B--ANAPC10	71	58	INPP4B	7802	chr4:143646992:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	YES	44	51	0.75	0.72	0.8874	0.7249	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH2077_LUNG	0.72	0.75	1.6123	TRUE	0	0	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	INPP4B--ANAPC10	10	36	INPP4B	7802	chr4:143646992:-	ANAPC10	64641	chr4:146002902:-	ONLY_REF_SPLICE	YES	44	358	0.51	0.11	0.125	0.4499	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH2077_LUNG	0.11	0.51	0.5749	TRUE	0	0	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	INPP4B--ANAPC10	4	58	INPP4B	8922	chr4:143581930:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	YES	44	51	0.58	0.55	0.05	0.7249	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH2077_LUNG	0.55	0.58	0.7749	TRUE	0	0	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	INPP4B--ANAPC10	1	59	INPP4B	11304	chr4:143481610:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	NO	37	51	0.62	0.54	0.0125	0.7374	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH2077_LUNG	0.54	0.62	0.7499	TRUE	0	0	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	VENTXP1--MAGEB18	8	7	VENTXP1	2068	chrX:26577521:+	MAGEB18	8554	chrX:26158297:+	INCL_NON_REF_SPLICE	YES	3	6	0.83	0.71	0.1	0.0875	VENTXP1->VENT_homeobox_pseudogene_1,chrX:26576454-26579169:+,MAGEB18->MAGE_family_member_B18,chrX:26156460-26158852:+	NCIH2077_LUNG	0.71	0.83	0.1875	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	COL1A2--PTMA	9	0	COL1A2	14602	chr7:94041987:+	PTMA	37657	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1125	0	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH2077_LUNG	1	1	0.1125	TRUE	0	0	0	9	0	TRUE	ACH-000010
NCIH2077_LUNG	ABCE1--RP11-223C24.2	8	0	ABCE1	1488	chr4:146019571:+	RP11-223C24.2	22874	chr4:143439856:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1	0	ABCE1->ATP_binding_cassette_subfamily_E_member_1,chr4:146019084-146050331:+,RP11-223C24.2->chr4:143435599-143440136:+	NCIH2077_LUNG	1	1	0.1	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	CTD-2034I4.1--CTD-2034I4.2	8	0	CTD-2034I4.1	1098	chr15:81719886:+	CTD-2034I4.2	10602	chr15:81959350:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1	0	CTD-2034I4.1->chr15:81719789-82047558:+,CTD-2034I4.2->chr15:81846344-81989121:+	NCIH2077_LUNG	1	1	0.1	TRUE	0	1	0	1	1	TRUE	ACH-000010
NCIH2077_LUNG	RP11-114H21.2--CTB-1I21.1	2	19	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	32	0	0.4	1	0.025	0.2375	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	NCIH2077_LUNG	0.4	1	0.2625	TRUE	0	2	0	12	2	TRUE	ACH-000010
NCIH2077_LUNG	INPP4B--ANAPC10	2	18	INPP4B	2181	chr4:143767362:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	YES	16	51	0.56	0.28	0.025	0.225	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH2077_LUNG	0.28	0.56	0.25	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	TGFB2--RRP15	6	0	TGFB2	4061	chr1:218578674:+	RRP15	20024	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.075	0	LOCAL_REARRANGEMENT:+:[8252],TGFB2->Oncogene{Bushman},chr1:218519577-218617961:+,transforming_growth_factor_beta_2,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	NCIH2077_LUNG	1	1	0.075	TRUE	0	1	1	1	0	TRUE	ACH-000010
NCIH2077_LUNG	LRFN5--MYO3B	5	0	LRFN5	1993	chr14:42077765:+	MYO3B	28567	chr2:171225732:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0625	0	LRFN5->chr14:42076773-42373752:+,leucine_rich_repeat_and_fibronectin_type_III_domain_containing_5,MYO3B->chr2:171034655-171511681:+,myosin_IIIB	NCIH2077_LUNG	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	AC079305.11--AC073636.1	4	1	AC079305.11	4415	chr2:177921000:-	AC073636.1	12747	chr2:177711105:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.05	0.0125	AC079305.11->chr2:177855236-178029244:-,AC073636.1->chr2:177710721-177714156:-	NCIH2077_LUNG	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	ENO1--H1F0	3	0	ENO1	10842	chr1:8924027:-	H1F0	16841	chr22:38201603:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,H1F0->H1_histone_family_member_0,chr22:38201114-38203442:+	NCIH2077_LUNG	1	1	0.0375	TRUE	0	0	0	4	0	TRUE	ACH-000010
NCIH2077_LUNG	IQCH-AS1--SRGAP2B	3	0	IQCH-AS1	2653	chr15:67812530:-	SRGAP2B	22219	chr1:144013901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	IQCH-AS1->IQCH_antisense_RNA_1,chr15:67695957-67814182:-,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	NCIH2077_LUNG	1	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	QKI--PACRG	3	0	QKI	9463	chr6:163899928:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH2077_LUNG	1	1	0.0375	TRUE	0	1	0	3	1	TRUE	ACH-000010
NCIH2077_LUNG	TMPRSS15--DYM	3	0	TMPRSS15	1081	chr21:19858117:-	DYM	34562	chr18:46956817:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	TMPRSS15->chr21:19641433-19858197:-,transmembrane_protease,_serine_15,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	NCIH2077_LUNG	1	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	MIR210HG--DNM3OS	2	1	MIR210HG	1106	chr11:568352:-	DNM3OS	7156	chr1:172113577:-	ONLY_REF_SPLICE	YES	8	70	0.27	0.04	0.025	0.0125	HGNC_GENEFAM,MIR210HG->MIR210_host_gene,chr11:565660-568457:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	NCIH2077_LUNG	0.04	0.27	0.0375	TRUE	0	2	0	3	2	TRUE	ACH-000010
NCIH2077_LUNG	ATRX--PGK1	2	0	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	NCIH2077_LUNG	1	1	0.025	TRUE	0	1	0	9	0	TRUE	ACH-000010
NCIH2077_LUNG	C1orf145--ODF2L	2	0	C1orf145	1243	chr1:228401123:-	ODF2L	33695	chr1:86814561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	C1orf145->chr1:228391207-228401365:-,chromosome_1_open_reading_frame_145,ODF2L->chr1:86814344-86862023:-,outer_dense_fiber_of_sperm_tails_2_like	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	C2orf42--RTN4	2	0	C2orf42	2365	chr2:70418050:-	RTN4	24883	chr2:55255356:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	CDC73--EXOC3	2	0	CDC73	2651	chr1:193094347:+	EXOC3	34914	chr5:462075:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+,EXOC3->chr5:443273-472052:+,exocyst_complex_component_3	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	CHFR--FGD4	1	4	CHFR	2239	chr12:133522207:-	FGD4	42528	chr12:32717071:+	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0125	0.05	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+	NCIH2077_LUNG	0.71	1	0.0625	TRUE	0	0	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	EIF5A--EIF4A1	2	0	EIF5A	1754	chr17:7211071:+	EIF4A1	13787	chr17:7480374:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	FBXO17--CLPX	2	0	FBXO17	1325	chr19:39466226:-	CLPX	21565	chr15:65451089:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	FBXO17->F-box_protein_17,chr19:39432044-39466550:-,CLPX->caseinolytic_mitochondrial_matrix_peptidase_chaperone_subunit,chr15:65440557-65477680:-	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	GLOD4--UBR5	2	0	GLOD4	7773	chr17:674565:-	UBR5	66134	chr8:103269945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	HNRNPA2B1--RPL4	2	0	HNRNPA2B1	1958	chr7:26240192:-	RPL4	19449	chr15:66795088:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4	NCIH2077_LUNG	1	1	0.025	TRUE	0	1	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	OXCT1--MARCKSL1	2	0	OXCT1	5725	chr5:41850132:-	MARCKSL1	25375	chr1:32800698:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	OXCT1->3-oxoacid_CoA-transferase_1,chr5:41730167-41870621:-,MARCKSL1->MARCKS-like_1,chr1:32799433-32801980:-	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	PDCD2--SHPRH	2	0	PDCD2	2636	chr6:170892145:-	SHPRH	30446	chr6:146248413:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PDCD2->chr6:170884383-170893780:-,programmed_cell_death_2,SHPRH->SNF2_histone_linker_PHD_RING_helicase,chr6:146185381-146285559:-	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	PIEZO1--CDK10	2	0	PIEZO1	10811	chr16:88799686:-	CDK10	39797	chr16:89761701:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	SDCBP--SRP9	2	0	SDCBP	4943	chr8:59477625:+	SRP9	17452	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	SF1--SAGE1	2	0	SF1	3289	chr11:64543970:-	SAGE1	22207	chrX:134988183:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,SAGE1->chrX:134971374-134995220:+,sarcoma_antigen_1	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	DNAJB4--CEP290	1	1	DNAJB4	1445	chr1:78445303:+	CEP290	33857	chr12:88500875:-	ONLY_REF_SPLICE	YES	12	21	0.14	0.09	0.0125	0.0125	DNAJB4->DnaJ_heat_shock_protein_family_(Hsp40)_member_B4,chr1:78444859-78483648:+,CEP290->centrosomal_protein_290,chr12:88442793-88535993:-	NCIH2077_LUNG	0.09	0.14	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D23--TDRD12	242	4	TBC1D23	1072	chr3:99979915:+	TDRD12	53079	chr19:33308995:+	ONLY_REF_SPLICE	YES	1	0	1	1	2.9249	0.0483	TBC1D23->TBC1_domain_family_member_23,chr3:99979844-100044095:+,TDRD12->chr19:33210659-33320483:+,tudor_domain_containing_12	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.9732	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--KIAA0556	171	91	IL4R	16990	chr16:27370315:+	KIAA0556	31771	chr16:27659925:+	ONLY_REF_SPLICE	YES	136	7	0.66	0.97	2.0668	1.0999	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	0.97	3.1667	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGSF3--GGT1	156	76	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	584	57	0.28	0.8	1.8855	0.9186	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.8	2.8041	TRUE	1	1	0	8	1	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPUL2--TTC9C	125	25	HNRNPUL2	7032	chr11:62487495:-	TTC9C	16296	chr11:62496295:+	ONLY_REF_SPLICE	YES	316	94	0.32	0.61	1.5108	0.3022	LOCAL_INVERSION:-:+:[720],HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2,TTC9C->chr11:62495541-62507765:+,tetratricopeptide_repeat_domain_9C	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.61	1.813	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--KIAA0556	61	103	IL4R	18040	chr16:27372136:+	KIAA0556	31771	chr16:27659925:+	ONLY_REF_SPLICE	YES	138	7	0.54	0.96	0.7373	1.2449	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.96	1.9822	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--KIAA0556	36	32	IL4R	16990	chr16:27370315:+	KIAA0556	34032	chr16:27689050:+	ONLY_REF_SPLICE	YES	136	79	0.33	0.46	0.4351	0.3868	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.46	0.8219	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGSF3--GGT1	19	69	IGSF3	13000	chr1:117131317:-	GGT1	26901	chr22:25003923:+	INCL_NON_REF_SPLICE	YES	584	56	0.13	0.61	0.2296	0.834	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.61	1.0636	TRUE	1	1	0	8	1	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--KIAA0556	1	103	IL4R	18245	chr16:27372341:+	KIAA0556	31771	chr16:27659925:+	ONLY_REF_SPLICE	YES	149	7	0.41	0.94	0.0121	1.2449	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.94	1.257	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JAK2--IGKV1OR10-1	19	7	JAK2	1990	chr9:4986022:+	IGKV1OR10-1	30968	chr10:42680942:+	ONLY_REF_SPLICE	YES	90	0	0.22	1	0.2296	0.0846	JAK2->ArcherDX_panel,FoundationOne_panel,Janus_kinase_2,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:4985033-5128183:+,IGKV1OR10-1->chr10:42680787-42681239:+,immunoglobulin_kappa_variable_1/OR10-1_(pseudogene)	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.3142	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--KIAA0556	9	38	IL4R	18040	chr16:27372136:+	KIAA0556	34032	chr16:27689050:+	ONLY_REF_SPLICE	YES	138	79	0.25	0.37	0.1088	0.4593	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.37	0.5681	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--KIAA0556	4	47	IL4R	18040	chr16:27372136:+	KIAA0556	32903	chr16:27665929:+	ONLY_REF_SPLICE	YES	138	45	0.27	0.53	0.0483	0.5681	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.53	0.6164	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTC37--NR2F1-AS1	11	13	TTC37	35519	chr5:94818177:-	NR2F1-AS1	57744	chr5:92774447:-	ONLY_REF_SPLICE	YES	40	12	0.38	0.67	0.1329	0.1571	TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.67	0.29	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	14	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1692	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1692	TRUE	0	6	0	9	2	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV38-1--TRAJ48	12	3	TRAV38-1	1588	chr14:22740438:+	TRAJ48	4597	chr14:22959479:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.145	0.0363	HGNC_GENEFAM,TRAV38-1->T_cell_receptor_alpha_variable_38-1,chr14:22739851-22740446:+,TRAJ48->T_cell_receptor_alpha_joining_48,chr14:22959479-22959541:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1813	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NSFP1--FAM134C	9	10	NSFP1	8226	chr17:44503048:+	FAM134C	21387	chr17:40744180:-	ONLY_REF_SPLICE	YES	33	40	0.37	0.32	0.1088	0.1209	NSFP1->N-ethylmaleimide-sensitive_factor_pseudogene_1,chr17:44450221-44564507:+,FAM134C->chr17:40731531-40762641:-,family_with_sequence_similarity_134_member_C	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.37	0.2297	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTC37--NR2F1-AS1	8	11	TTC37	35519	chr5:94818177:-	NR2F1-AS1	61871	chr5:92747215:-	ONLY_REF_SPLICE	YES	40	8	0.32	0.7	0.0967	0.1329	TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.7	0.2296	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--C9orf3	10	0	MIR142	1039	chr17:56409831:-	C9orf3	42418	chr9:97848964:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1209	0	MIR142->chr17:56408245-56409869:-,microRNA_142,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTC37--NR2F1-AS1	6	13	TTC37	35519	chr5:94818177:-	NR2F1-AS1	56697	chr5:92831809:-	ONLY_REF_SPLICE	YES	40	13	0.32	0.59	0.0725	0.1571	TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.59	0.2296	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PUS10--TG	8	4	PUS10	23116	chr2:61167934:-	TG	76247	chr8:134042066:+	INCL_NON_REF_SPLICE	YES	8	0	0.6	1	0.0967	0.0483	PUS10->Oncogene{Bushman},chr2:61167357-61245394:-,pseudouridylate_synthase_10,TG->chr8:133879203-134147147:+,thyroglobulin	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.145	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM134C--PLCD3	6	2	FAM134C	2538	chr17:40761104:-	PLCD3	21221	chr17:43198739:-	ONLY_REF_SPLICE	YES	47	9	0.15	0.47	0.0725	0.0242	FAM134C->chr17:40731531-40762641:-,family_with_sequence_similarity_134_member_C,PLCD3->chr17:43186335-43210721:-,phospholipase_C_delta_3	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.47	0.0967	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM134C--NSF	5	1	FAM134C	9950	chr17:40737143:-	NSF	32255	chr17:44782125:+	ONLY_REF_SPLICE	YES	51	40	0.11	0.13	0.0604	0.0121	FAM134C->chr17:40731531-40762641:-,family_with_sequence_similarity_134_member_C,NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.13	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D23--TDRD12	4	2	TBC1D23	1072	chr3:99979915:+	TDRD12	54192	chr19:33311939:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0483	0.0242	TBC1D23->TBC1_domain_family_member_23,chr3:99979844-100044095:+,TDRD12->chr19:33210659-33320483:+,tudor_domain_containing_12	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKAP13--FAM174B	4	1	AKAP13	53807	chr15:86283503:+	FAM174B	68495	chr15:93325371:-	ONLY_REF_SPLICE	YES	95	0	0.05	1	0.0483	0.0121	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,FAM174B->chr15:93160673-93353114:-,family_with_sequence_similarity_174_member_B	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2K--RUNX2	3	1	UBE2K	1347	chr4:39700010:+	RUNX2	32751	chr6:45630852:+	ONLY_REF_SPLICE	YES	14	1	0.22	0.8	0.0363	0.0121	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,RUNX2->Oncogene{Bushman},chr6:45295894-45632086:+,runt_related_transcription_factor_2	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.8	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC007464.1--LINC00299	3	0	AC007464.1	1346	chr2:8417869:-	LINC00299	22585	chr2:8383771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	AC007464.1->chr2:8062556-8418214:-,LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	21	0	1	21	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKAP13--FAM174B	2	1	AKAP13	55030	chr15:86284726:+	FAM174B	69582	chr15:93242393:-	ONLY_REF_SPLICE	YES	75	0	0.04	1	0.0242	0.0121	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,FAM174B->chr15:93160673-93353114:-,family_with_sequence_similarity_174_member_B	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC007464.1--LINC00299	2	0	AC007464.1	1346	chr2:8417869:-	LINC00299	26678	chr2:8200535:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	AC007464.1->chr2:8062556-8418214:-,LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	1	35	0	1	35	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CLPTM1L	2	0	CPSF6	11046	chr12:69656342:+	CLPTM1L	37105	chr5:1318568:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2336H13.2--MON1B	2	0	CTD-2336H13.2	1138	chr16:76770376:+	MON1B	7108	chr16:77225373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CTD-2336H13.2->chr16:76770239-76962066:+,MON1B->MON1_homolog_B,_secretory_trafficking_associated,chr16:77224732-77236302:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	5	0	2	5	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED11--POLR2J2	2	0	MED11	1147	chr17:4634869:+	POLR2J2	9465	chr7:102306610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	MED11->chr17:4634723-4636905:+,mediator_complex_subunit_11,POLR2J2->chr7:102277474-102312076:-,chr7:102277496-102312088:-,polymerase_(RNA)_II_subunit_J2	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NQO2--MKI67	2	0	NQO2	9651	chr6:3006793:+	MKI67	21923	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	2	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--CBX5	2	0	RCC1	2175	chr1:28834672:+	CBX5	21873	chr12:54651476:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CBX5->chr12:54624724-54673886:-,chromobox_5	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKAP13--FAM174B	1	2	AKAP13	55030	chr15:86284726:+	FAM174B	68495	chr15:93325371:-	ONLY_REF_SPLICE	YES	75	0	0.04	1	0.0121	0.0242	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,FAM174B->chr15:93160673-93353114:-,family_with_sequence_similarity_174_member_B	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKAP13--FAM174B	1	2	AKAP13	60348	chr15:86291040:+	FAM174B	68495	chr15:93325371:-	ONLY_REF_SPLICE	YES	53	0	0.05	1	0.0121	0.0242	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,FAM174B->chr15:93160673-93353114:-,family_with_sequence_similarity_174_member_B	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITPR2--STK38L	1	1	ITPR2	40219	chr12:26703180:-	STK38L	72278	chr12:27450643:+	ONLY_REF_SPLICE	YES	15	15	0.12	0.12	0.0121	0.0121	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.12	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000267
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC005944.2--SOD1	3	0	AC005944.2	1410	chr19:3053317:+	SOD1	7969	chr21:33036143:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	AC005944.2->chr19:3052908-3053722:+,SOD1->chr21:33031935-33041244:+,superoxide_dismutase_1,_soluble	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2L1--RNF114	3	0	BCL2L1	3335	chr20:30309458:-	RNF114	11264	chr20:48561919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-,RNF114->chr20:48552948-48570429:+,ring_finger_protein_114	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD53--MFN1	3	0	CD53	4334	chr1:111435155:+	MFN1	28476	chr3:179104221:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	CD53->CD53_molecule,Oncogene{Bushman},chr1:111415775-111442550:+,MFN1->chr3:179065480-179112719:+,mitofusin_1	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CES3--CASC5	3	0	CES3	1153	chr16:66995292:+	CASC5	41204	chr15:40947107:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	CES3->carboxylesterase_3,chr16:66995140-67009051:+,CASC5->Oncogene{Bushman},cancer_susceptibility_candidate_5,chr15:40886218-40956540:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-55O6.12--ROCK1	3	0	CTB-55O6.12	4787	chr19:14280680:+	ROCK1	28427	chr18:18567000:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	CTB-55O6.12->chr19:14247991-14282079:+,ROCK1->Rho_associated_coiled-coil_containing_protein_kinase_1,chr18:18526867-18691812:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ETS1--FEV	3	0	ETS1	15994	chr11:128333457:-	FEV	26222	chr2:219846979:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},ETS1->ETS_proto-oncogene_1,_transcription_factor,Oncogene{Bushman},chr11:128328656-128457453:-,FEV->FEV,_ETS_transcription_factor,Oncogene{Bushman},chr2:219845809-219850379:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FDFT1--TLR9	3	0	FDFT1	12972	chr8:11696002:+	TLR9	16846	chr3:52273126:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1,TLR9->chr3:52255096-52273183:-,chr3:52255097-52265206:-,toll_like_receptor_9	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNPTAB--PCED1B	3	0	GNPTAB	6637	chr12:102179790:-	PCED1B	35267	chr12:47628790:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	GNPTAB->N-acetylglucosamine-1-phosphate_transferase_alpha_and_beta_subunits,chr12:102139275-102224716:-,PCED1B->PC-esterase_domain_containing_1B,chr12:47473386-47630443:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KRT222--CHD7	3	0	KRT222	13393	chr17:38787075:-	CHD7	27349	chr8:61720794:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	KRT222->chr17:38785049-38821393:-,chr17:38810917-38821433:-,keratin_222,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL3--PREX1	3	0	RPL3	5795	chr22:39711450:-	PREX1	45699	chr20:47248867:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SART1--SRSF5	3	0	SART1	7286	chr11:65743930:+	SRSF5	17667	chr14:70235550:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1,SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFPQ--CCDC41	3	0	SFPQ	1361	chr1:35658389:-	CCDC41	19040	chr12:94853649:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,CCDC41->chr12:94700225-94853764:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC002116.7--SET	2	0	AC002116.7	3379	chr19:36510286:+	SET	12303	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	AC002116.7->chr19:36505410-36536874:+,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKHD1--ZNF431	2	0	ANKHD1	25436	chr5:139889766:+	ZNF431	56565	chr19:21372668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATF6B--RP11-445H22.3	2	0	ATF6B	4790	chr6:32088548:-	RP11-445H22.3	19168	chr20:43285692:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,RP11-445H22.3->chr20:43285092-43324737:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLI1--OBSCN	2	0	FLI1	11065	chr11:128651918:+	OBSCN	26018	chr1:228401142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPC--CD38	2	0	HNRNPC	11906	chr14:21698478:-	CD38	21564	chr4:15818134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2),CD38->CD38_molecule,chr4:15779898-15854853:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAPK9--CARD8	2	0	MAPK9	18447	chr5:179665332:-	CARD8	42397	chr19:48715232:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	MAPK9->Oncogene{Bushman},chr5:179660143-179719099:-,mitogen-activated_protein_kinase_9,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED15--PI4KA	2	0	MED15	16866	chr22:20922918:+	PI4KA	49400	chr22:21119981:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	{Klijn_CCL:Ovary=1},MED15->chr22:20850200-20941919:+,mediator_complex_subunit_15,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED31--BRD2	2	0	MED31	2279	chr17:6553676:-	BRD2	13562	chr6:32942239:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	MED31->chr17:6546635-6554954:-,mediator_complex_subunit_31,BRD2->Oncogene{Bushman},bromodomain_containing_2,chr6:32936437-32949282:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOS3--EVL	2	0	NOS3	16558	chr7:150708074:+	EVL	49587	chr14:100607517:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	NOS3->chr7:150688083-150711676:+,nitric_oxide_synthase_3,EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE3B--COPB1	2	0	PDE3B	2331	chr11:14666599:+	COPB1	33425	chr11:14515985:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B,COPB1->chr11:14464986-14521573:-,coatomer_protein_complex_subunit_beta_1	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PEX3--POC1B	2	0	PEX3	8006	chr6:143795993:+	POC1B	18384	chr12:89885892:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	PEX3->chr6:143771944-143811147:+,peroxisomal_biogenesis_factor_3,POC1B->POC1_centriolar_protein_B,chr12:89813495-89919801:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMD13--ALG6	2	0	PSMD13	2678	chr11:239076:+	ALG6	21857	chr1:63877597:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	PSMD13->chr11:236546-252983:+,proteasome_26S_subunit,_non-ATPase_13,ALG6->ALG6,_alpha-1,3-glucosyltransferase,chr1:63833261-63904233:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RGPD3--WIPI2	2	0	RGPD3	19254	chr2:107039499:-	WIPI2	37793	chr7:5265454:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	RGPD3->RANBP2-like_and_GRIP_domain_containing_3,chr2:107021446-107084832:-,WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-156P1.3--NHP2L1	2	0	RP11-156P1.3	1489	chr17:45177201:-	NHP2L1	27692	chr22:42076368:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	RP11-156P1.3->chr17:45061411-45177689:-,NHP2L1->chr22:42069934-42086508:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3GL1--UHRF1	2	0	SH3GL1	1224	chr19:4400321:-	UHRF1	18771	chr19:4910888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	SH3GL1->Oncogene{Bushman},SH3_domain_containing_GRB2_like_1,chr19:4360367-4400544:-,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZBTB20--TBC1D5	2	0	ZBTB20	6598	chr3:114693213:-	TBC1D5	80366	chr3:17349626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
MDAMB468_BREAST	UBR5--SLC25A32	141	6	UBR5	1669	chr8:103424401:-	SLC25A32	58533	chr8:104420012:-	ONLY_REF_SPLICE	YES	4	67	0.97	0.69	2.6367	0.1122	{Klijn_CCL:Breast=1},UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32	MDAMB468_BREAST	0.69	0.97	2.7489	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	DCAF8--COPA	121	48	DCAF8	8000	chr1:160231907:-	COPA	53444	chr1:160260476:-	ONLY_REF_SPLICE	YES	47	234	0.78	0.42	2.2627	0.8976	HGNC_GENEFAM,LOCAL_INVERSION:-,chr1:-:[4143],DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha	MDAMB468_BREAST	0.42	0.78	3.1603	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	DCAF8--COPA	65	3	DCAF8	7668	chr1:160232239:-	COPA	53444	chr1:160260476:-	ONLY_REF_SPLICE	YES	7	234	0.91	0.23	1.2155	0.0561	HGNC_GENEFAM,LOCAL_INVERSION:-,chr1:-:[4143],DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha	MDAMB468_BREAST	0.23	0.91	1.2716	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	ARID1A--MAST2	56	11	ARID1A	2508	chr1:27024031:+	MAST2	29070	chr1:46290105:+	ONLY_REF_SPLICE	YES	13	46	0.84	0.59	1.0472	0.2057	Cosmic{samples=153,mutations=1,papers=1},{Klijn_CCL:Breast=1},ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2	MDAMB468_BREAST	0.59	0.84	1.2529	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	HP1BP3--ZNF362	49	12	HP1BP3	1129	chr1:21113688:-	ZNF362	25399	chr1:33741701:+	ONLY_REF_SPLICE	YES	29	5	0.68	0.92	0.9163	0.2244	HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,ZNF362->chr1:33722146-33766320:+,zinc_finger_protein_362	MDAMB468_BREAST	0.68	0.92	1.1407	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	RNF24--RP11-352D3.2	30	9	RNF24	1146	chr20:3996084:-	RP11-352D3.2	18927	chr20:4053311:-	ONLY_REF_SPLICE	YES	8	0	0.83	1	0.561	0.1683	LOCAL_REARRANGEMENT:-:[54570],RNF24->chr20:3907956-3996229:-,ring_finger_protein_24,RP11-352D3.2->chr20:4050799-4055812:-	MDAMB468_BREAST	0.83	1	0.7293	TRUE	0	1	0	1	1	TRUE	ACH-000849
MDAMB468_BREAST	MIR663A--TLE3	23	18	MIR663A	2808	chr20:26189937:-	TLE3	28661	chr15:70350636:-	INCL_NON_REF_SPLICE	YES	71	25	0.37	0.62	0.4301	0.3366	MIR663A->chr20:26167556-26232162:-,microRNA_663a,TLE3->chr15:70340129-70390515:-,transducin_like_enhancer_of_split_3	MDAMB468_BREAST	0.37	0.62	0.7667	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	ARID1A--MAST2	12	1	ARID1A	1068	chr1:27022591:+	MAST2	29070	chr1:46290105:+	INCL_NON_REF_SPLICE	YES	1	46	0.93	0.22	0.2244	0.0187	Cosmic{samples=153,mutations=1,papers=1},{Klijn_CCL:Breast=1},ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2	MDAMB468_BREAST	0.22	0.93	0.2431	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	STK3--GRHL2	9	6	STK3	18604	chr8:99718695:-	GRHL2	40346	chr8:102555469:+	ONLY_REF_SPLICE	YES	43	40	0.26	0.27	0.1683	0.1122	STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2	MDAMB468_BREAST	0.26	0.27	0.2805	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	BAIAP2--AZI1	9	5	BAIAP2	27835	chr17:79090112:+	AZI1	37436	chr17:79177407:-	INCL_NON_REF_SPLICE	YES	3	34	0.82	0.29	0.1683	0.0935	LOCAL_INVERSION:+:-:[72161],BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,AZI1->chr17:79163393-79196799:-	MDAMB468_BREAST	0.29	0.82	0.2618	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	DCAF8--COPA	5	16	DCAF8	7841	chr1:160232066:-	COPA	53444	chr1:160260476:-	ONLY_REF_SPLICE	YES	79	234	0.21	0.08	0.0935	0.2992	HGNC_GENEFAM,LOCAL_INVERSION:-,chr1:-:[4143],DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha	MDAMB468_BREAST	0.08	0.21	0.3927	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	RDH13--FBXO3	7	1	RDH13	2700	chr19:55580690:-	FBXO3	27190	chr11:33792376:-	ONLY_REF_SPLICE	YES	6	80	0.57	0.09	0.1309	0.0187	RDH13->chr19:55550476-55582659:-,retinol_dehydrogenase_13_(all-trans/9-cis),FBXO3->F-box_protein_3,chr11:33762485-33796089:-	MDAMB468_BREAST	0.09	0.57	0.1496	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	HP1BP3--ZNF362	3	12	HP1BP3	1129	chr1:21113688:-	ZNF362	23387	chr1:33736088:+	ONLY_REF_SPLICE	YES	29	2	0.34	0.88	0.0561	0.2244	HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,ZNF362->chr1:33722146-33766320:+,zinc_finger_protein_362	MDAMB468_BREAST	0.34	0.88	0.2805	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	HP1BP3--ZNF362	2	13	HP1BP3	3868	chr1:21106305:-	ZNF362	25399	chr1:33741701:+	ONLY_REF_SPLICE	YES	207	5	0.07	0.75	0.0374	0.2431	HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,ZNF362->chr1:33722146-33766320:+,zinc_finger_protein_362	MDAMB468_BREAST	0.07	0.75	0.2805	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	ELAC1--RP11-267C16.1	4	1	ELAC1	3437	chr18:48500931:+	RP11-267C16.1	11814	chr18:48899108:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0748	0.0187	ELAC1->chr18:48494361-48514491:+,elaC_ribonuclease_Z_1,RP11-267C16.1->chr18:48872619-49088939:+	MDAMB468_BREAST	1	1	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	HP1BP3--ZNF362	1	13	HP1BP3	1675	chr1:21113142:-	ZNF362	25399	chr1:33741701:+	ONLY_REF_SPLICE	NO	70	5	0.17	0.74	0.0187	0.2431	HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,ZNF362->chr1:33722146-33766320:+,zinc_finger_protein_362	MDAMB468_BREAST	0.17	0.74	0.2618	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	CTD-2314B22.3--RP11-536C10.20	4	0	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.20	26286	chr14:20151826:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.20->chr14:20132257-20151836:-	MDAMB468_BREAST	1	1	0.0748	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	UBR5--SLC25A32	3	3	UBR5	1669	chr8:103424401:-	SLC25A32	59684	chr8:104417089:-	ONLY_REF_SPLICE	YES	4	74	0.6	0.07	0.0561	0.0561	{Klijn_CCL:Breast=1},UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32	MDAMB468_BREAST	0.07	0.6	0.1122	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	UNC13B--ENHO	3	3	UNC13B	12702	chr9:35313986:+	ENHO	39847	chr9:34521854:-	ONLY_REF_SPLICE	YES	31	0	0.16	1	0.0561	0.0561	{Klijn_CCL:Breast=1},UNC13B->chr9:35161999-35405335:+,unc-13_homolog_B_(C._elegans),ENHO->chr9:34521038-34523039:-,energy_homeostasis_associated	MDAMB468_BREAST	0.16	1	0.1122	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	AL136376.1--RPS28	3	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0561	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MDAMB468_BREAST	1	1	0.0561	TRUE	0	0	0	12	0	TRUE	ACH-000849
MDAMB468_BREAST	GALNT11--ITCH	2	3	GALNT11	6907	chr7:151791607:+	ITCH	26037	chr20:32957200:+	ONLY_REF_SPLICE	YES	27	1	0.16	0.83	0.0374	0.0561	GALNT11->chr7:151722759-151819425:+,polypeptide_N-acetylgalactosaminyltransferase_11,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	MDAMB468_BREAST	0.16	0.83	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	UBR5--RP11-318M2.2	2	1	UBR5	1669	chr8:103424401:-	RP11-318M2.2	58556	chr8:104298130:-	ONLY_REF_SPLICE	YES	4	3	0.43	0.5	0.0374	0.0187	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,RP11-318M2.2->chr8:104169218-104311000:-	MDAMB468_BREAST	0.43	0.5	0.0561	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	ATR--U2SURP	2	0	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	MDAMB468_BREAST	1	1	0.0374	TRUE	0	10	0	10	7	TRUE	ACH-000849
MDAMB468_BREAST	UBR5--RP11-318M2.2	2	0	UBR5	1669	chr8:103424401:-	RP11-318M2.2	63372	chr8:104258912:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,RP11-318M2.2->chr8:104169218-104311000:-	MDAMB468_BREAST	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	RNF24--RP11-352D3.2	1	2	RNF24	1146	chr20:3996084:-	RP11-352D3.2	20071	chr20:4050921:-	ONLY_REF_SPLICE	NO	8	6	0.27	0.33	0.0187	0.0374	LOCAL_REARRANGEMENT:-:[54570],RNF24->chr20:3907956-3996229:-,ring_finger_protein_24,RP11-352D3.2->chr20:4050799-4055812:-	MDAMB468_BREAST	0.27	0.33	0.0561	TRUE	0	0	0	1	0	TRUE	ACH-000849
MPP89_PLEURA	SNRNP70--CD37	188	49	SNRNP70	9112	chr19:49606844:+	CD37	16980	chr19:49840166:+	ONLY_REF_SPLICE	YES	487	2	0.33	0.99	1.6074	0.419	SNRNP70->chr19:49588676-49611862:+,small_nuclear_ribonucleoprotein_U1_subunit_70,CD37->CD37_molecule,chr19:49838428-49846592:+	MPP89_PLEURA	0.33	0.99	2.0264	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	USP34--XPO1	176	10	USP34	1120	chr2:61697785:-	XPO1	85339	chr2:61729445:-	ONLY_REF_SPLICE	YES	15	232	0.93	0.44	1.5048	0.0855	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	MPP89_PLEURA	0.44	0.93	1.5903	TRUE	0	1	0	4	1	TRUE	ACH-000319
MPP89_PLEURA	RANBP17--WWC1	87	12	RANBP17	5787	chr5:170319557:+	WWC1	74369	chr5:167887655:+	ONLY_REF_SPLICE	YES	13	60	0.88	0.62	0.7439	0.1026	RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+,WWC1->WW_and_C2_domain_containing_1,chr5:167718656-167899308:+	MPP89_PLEURA	0.62	0.88	0.8465	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	PXDN--NRXN1	58	9	PXDN	10487	chr2:1677415:-	NRXN1	73346	chr2:50464108:-	ONLY_REF_SPLICE	YES	69	0	0.49	1	0.4959	0.077	PXDN->chr2:1635659-1748624:-,peroxidasin,NRXN1->chr2:50145643-51259674:-,neurexin_1	MPP89_PLEURA	0.49	1	0.5729	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	VCP--PIGO	50	19	VCP	5108	chr9:35066672:-	PIGO	19155	chr9:35095563:-	ONLY_REF_SPLICE	YES	308	6	0.18	0.92	0.4275	0.1625	LOCAL_REARRANGEMENT:-:[15439],VCP->chr9:35056061-35073246:-,valosin_containing_protein,PIGO->chr9:35088685-35096591:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_O	MPP89_PLEURA	0.18	0.92	0.59	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	EHBP1--AC092155.4	40	12	EHBP1	3887	chr2:62934430:+	AC092155.4	39381	chr2:62858700:-	ONLY_REF_SPLICE	YES	41	0	0.56	1	0.342	0.1026	LOCAL_INVERSION:+:-:[11197],EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,AC092155.4->chr2:62817390-62889789:-	MPP89_PLEURA	0.56	1	0.4446	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	WDR62--MXD1	36	3	WDR62	23875	chr19:36585066:+	MXD1	41205	chr2:70162483:+	ONLY_REF_SPLICE	YES	31	3	0.56	0.93	0.3078	0.0257	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,MXD1->MAX_dimerization_protein_1,Oncogene{Bushman},chr2:70124820-70170077:+	MPP89_PLEURA	0.56	0.93	0.3335	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	PXDN--NRXN1	30	24	PXDN	16545	chr2:1667377:-	NRXN1	73346	chr2:50464108:-	ONLY_REF_SPLICE	YES	56	0	0.49	1	0.2565	0.2052	PXDN->chr2:1635659-1748624:-,peroxidasin,NRXN1->chr2:50145643-51259674:-,neurexin_1	MPP89_PLEURA	0.49	1	0.4617	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	TMEM68--TOX	32	3	TMEM68	1139	chr8:56685828:-	TOX	20935	chr8:59872567:-	ONLY_REF_SPLICE	YES	10	11	0.78	0.76	0.2736	0.0257	TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68,TOX->chr8:59717977-60031767:-,thymocyte_selection_associated_high_mobility_group_box	MPP89_PLEURA	0.76	0.78	0.2993	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	IFT88--HSPH1	27	1	IFT88	1811	chr13:21141395:+	HSPH1	39946	chr13:31725879:-	ONLY_REF_SPLICE	YES	1	132	0.97	0.17	0.2309	0.0086	IFT88->chr13:21140585-21265503:+,intraflagellar_transport_88,HSPH1->Oncogene{Bushman},chr13:31710762-31736525:-,heat_shock_protein_family_H_(Hsp110)_member_1	MPP89_PLEURA	0.17	0.97	0.2395	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	C3--R3HDML	24	10	C3	15189	chr19:6702138:-	R3HDML	39074	chr20:42979635:+	INCL_NON_REF_SPLICE	YES	15	0	0.69	1	0.2052	0.0855	C3->chr19:6677715-6730573:-,complement_component_3,R3HDML->R3H_domain_containing_like,chr20:42965626-42979875:+	MPP89_PLEURA	0.69	1	0.2907	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	PXDN--NRXN1	22	16	PXDN	14075	chr2:1669986:-	NRXN1	73346	chr2:50464108:-	ONLY_REF_SPLICE	YES	54	0	0.41	1	0.1881	0.1368	PXDN->chr2:1635659-1748624:-,peroxidasin,NRXN1->chr2:50145643-51259674:-,neurexin_1	MPP89_PLEURA	0.41	1	0.3249	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	EHBP1--AC092155.4	19	2	EHBP1	3887	chr2:62934430:+	AC092155.4	45345	chr2:62817712:-	ONLY_REF_SPLICE	YES	41	1	0.34	0.95	0.1625	0.0171	LOCAL_INVERSION:+:-:[11197],EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,AC092155.4->chr2:62817390-62889789:-	MPP89_PLEURA	0.34	0.95	0.1796	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	RGL1--RP11-522D2.1	14	1	RGL1	3691	chr1:183711424:+	RP11-522D2.1	30308	chr1:180531340:+	ONLY_REF_SPLICE	YES	12	0	0.56	1	0.1197	0.0086	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,RP11-522D2.1->chr1:180528112-180535654:+	MPP89_PLEURA	0.56	1	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	CCDC88A--RTN4	9	10	CCDC88A	8066	chr2:55615914:-	RTN4	62662	chr2:55214834:-	ONLY_REF_SPLICE	YES	30	191	0.39	0.09	0.077	0.0855	CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	MPP89_PLEURA	0.09	0.39	0.1625	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	PRKCH--HIF1A	10	2	PRKCH	14432	chr14:61858006:+	HIF1A	51667	chr14:62200856:+	ONLY_REF_SPLICE	YES	0	130	1	0.08	0.0855	0.0171	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	MPP89_PLEURA	0.08	1	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	QKI--PACRG	6	8	QKI	10630	chr6:163956157:+	PACRG	37534	chr6:163483182:+	ONLY_REF_SPLICE	YES	174	0	0.07	1	0.0513	0.0684	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	MPP89_PLEURA	0.07	1	0.1197	TRUE	0	2	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	PXDN--NRXN1	3	18	PXDN	15192	chr2:1668730:-	NRXN1	73346	chr2:50464108:-	ONLY_REF_SPLICE	YES	65	0	0.24	1	0.0257	0.1539	PXDN->chr2:1635659-1748624:-,peroxidasin,NRXN1->chr2:50145643-51259674:-,neurexin_1	MPP89_PLEURA	0.24	1	0.1796	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	WDR62--MXD1	6	2	WDR62	22741	chr19:36583713:+	MXD1	41205	chr2:70162483:+	ONLY_REF_SPLICE	YES	51	3	0.14	0.73	0.0513	0.0171	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,MXD1->MAX_dimerization_protein_1,Oncogene{Bushman},chr2:70124820-70170077:+	MPP89_PLEURA	0.14	0.73	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	TMEM68--TOX	6	1	TMEM68	1139	chr8:56685828:-	TOX	22001	chr8:59852103:-	ONLY_REF_SPLICE	YES	10	17	0.41	0.29	0.0513	0.0086	TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68,TOX->chr8:59717977-60031767:-,thymocyte_selection_associated_high_mobility_group_box	MPP89_PLEURA	0.29	0.41	0.0599	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	AC092594.1--PXDN	6	0	AC092594.1	1105	chr2:19546405:-	PXDN	36779	chr2:1658280:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0	AC092594.1->chr2:19167729-19546509:-,PXDN->chr2:1635659-1748624:-,peroxidasin	MPP89_PLEURA	1	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	IFT88--HSPH1	6	0	IFT88	1811	chr13:21141395:+	HSPH1	40497	chr13:31725328:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0	IFT88->chr13:21140585-21265503:+,intraflagellar_transport_88,HSPH1->Oncogene{Bushman},chr13:31710762-31736525:-,heat_shock_protein_family_H_(Hsp110)_member_1	MPP89_PLEURA	1	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	LARP1--KIF4B	6	0	LARP1	2848	chr5:154135753:+	KIF4B	27995	chr5:154393603:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,KIF4B->chr5:154393260-154397685:+,kinesin_family_member_4B	MPP89_PLEURA	1	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	VCP--PIGO	1	19	VCP	5108	chr9:35066672:-	PIGO	18745	chr9:35095973:-	ONLY_REF_SPLICE	YES	308	2	0.06	0.91	0.0086	0.1625	LOCAL_REARRANGEMENT:-:[15439],VCP->chr9:35056061-35073246:-,valosin_containing_protein,PIGO->chr9:35088685-35096591:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_O	MPP89_PLEURA	0.06	0.91	0.1711	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	RGL1--RP11-522D2.1	5	2	RGL1	6007	chr1:183775619:+	RP11-522D2.1	30308	chr1:180531340:+	ONLY_REF_SPLICE	YES	14	0	0.33	1	0.0428	0.0171	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,RP11-522D2.1->chr1:180528112-180535654:+	MPP89_PLEURA	0.33	1	0.0599	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	ANTXR1--NR1H2	5	1	ANTXR1	19545	chr2:69397421:+	NR1H2	32940	chr19:50841259:+	ONLY_REF_SPLICE	YES	74	0	0.07	1	0.0428	0.0086	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,NR1H2->chr19:50832910-50886239:+,nuclear_receptor_subfamily_1_group_H_member_2	MPP89_PLEURA	0.07	1	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	RGL1--RP11-522D2.1	5	1	RGL1	6007	chr1:183775619:+	RP11-522D2.1	31449	chr1:180534387:+	ONLY_REF_SPLICE	YES	14	3	0.3	0.67	0.0428	0.0086	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,RP11-522D2.1->chr1:180528112-180535654:+	MPP89_PLEURA	0.3	0.67	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	IFT88--HSPH1	4	2	IFT88	2340	chr13:21141924:+	HSPH1	39946	chr13:31725879:-	ONLY_REF_SPLICE	YES	7	132	0.46	0.04	0.0342	0.0171	IFT88->chr13:21140585-21265503:+,intraflagellar_transport_88,HSPH1->Oncogene{Bushman},chr13:31710762-31736525:-,heat_shock_protein_family_H_(Hsp110)_member_1	MPP89_PLEURA	0.04	0.46	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	EHBP1--AC092155.4	1	12	EHBP1	3887	chr2:62934430:+	AC092155.4	38342	chr2:62889068:-	ONLY_REF_SPLICE	YES	41	0	0.24	1	0.0086	0.1026	LOCAL_INVERSION:+:-:[11197],EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,AC092155.4->chr2:62817390-62889789:-	MPP89_PLEURA	0.24	1	0.1112	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	TMEM68--TOX	3	4	TMEM68	1181	chr8:56685786:-	TOX	20935	chr8:59872567:-	ONLY_REF_SPLICE	YES	27	11	0.21	0.39	0.0257	0.0342	TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68,TOX->chr8:59717977-60031767:-,thymocyte_selection_associated_high_mobility_group_box	MPP89_PLEURA	0.21	0.39	0.0599	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	AC098617.1--DNAH7	3	2	AC098617.1	1233	chr2:192711497:+	DNAH7	77659	chr2:196718252:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0257	0.0171	AC098617.1->chr2:192711265-192908909:+,DNAH7->chr2:196602427-196933536:-,dynein_axonemal_heavy_chain_7	MPP89_PLEURA	0.83	1	0.0428	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	USP34--XPO1	1	10	USP34	1120	chr2:61697785:-	XPO1	80582	chr2:61761038:-	ONLY_REF_SPLICE	YES	15	306	0.42	0.03	0.0086	0.0855	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	MPP89_PLEURA	0.03	0.42	0.0941	TRUE	0	2	0	4	2	TRUE	ACH-000319
MPP89_PLEURA	PLAGL1--LAMA2	3	1	PLAGL1	3525	chr6:144306272:-	LAMA2	71129	chr6:129781345:+	ONLY_REF_SPLICE	YES	40	1	0.09	0.8	0.0257	0.0086	PLAGL1->Oncogene{Bushman},PLAG1_like_zinc_finger_1,chr6:144261437-144385735:-,LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2	MPP89_PLEURA	0.09	0.8	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	RGL1--RP11-522D2.1	3	1	RGL1	3691	chr1:183711424:+	RP11-522D2.1	31449	chr1:180534387:+	ONLY_REF_SPLICE	YES	12	3	0.25	0.57	0.0257	0.0086	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,RP11-522D2.1->chr1:180528112-180535654:+	MPP89_PLEURA	0.25	0.57	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	TMSB10--RPS2	3	0	TMSB10	1889	chr2:85133637:+	RPS2	7385	chr16:2012524:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	MPP89_PLEURA	1	1	0.0257	TRUE	0	0	0	3	0	TRUE	ACH-000319
MPP89_PLEURA	AGAP1--ACKR3	2	1	AGAP1	1761	chr2:236403493:+	ACKR3	42236	chr2:237489083:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0171	0.0086	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,ACKR3->atypical_chemokine_receptor_3,chr2:237476430-237491001:+	MPP89_PLEURA	0.43	1	0.0257	TRUE	0	1	0	1	1	TRUE	ACH-000319
MPP89_PLEURA	DEGS1--NVL	2	0	DEGS1	2440	chr1:224371120:+	NVL	33819	chr1:224438020:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_v2:{count=3;pct=0.03%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:+:-:[33893],DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	MPP89_PLEURA	1	1	0.0171	TRUE	1	1	0	3	1	TRUE	ACH-000319
MPP89_PLEURA	HIF1A-AS2--RP11-902B17.1	2	0	HIF1A-AS2	1213	chr14:62217603:-	RP11-902B17.1	7818	chr14:61773953:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,RP11-902B17.1->chr14:61764882-61789536:-	MPP89_PLEURA	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	MTIF2--RPS27A	2	0	MTIF2	2779	chr2:55494705:-	RPS27A	21992	chr2:55461255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	LOCAL_INVERSION:-:+:[742],MTIF2->chr2:55463731-55496483:-,mitochondrial_translational_initiation_factor_2,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	MPP89_PLEURA	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	NRXN3--CEP128	1	1	NRXN3	27051	chr14:79746881:+	CEP128	78945	chr14:80997230:-	ONLY_REF_SPLICE	YES	18	7	0.1	0.22	0.0086	0.0086	NRXN3->chr14:78708734-80330762:+,neurexin_3,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	MPP89_PLEURA	0.1	0.22	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	PLAGL1--LAMA2	1	1	PLAGL1	2463	chr6:144329227:-	LAMA2	71129	chr6:129781345:+	ONLY_REF_SPLICE	YES	36	1	0.05	0.67	0.0086	0.0086	PLAGL1->Oncogene{Bushman},PLAG1_like_zinc_finger_1,chr6:144261437-144385735:-,LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2	MPP89_PLEURA	0.05	0.67	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	RP11-466I1.1--CTD-3012A18.1	1	1	RP11-466I1.1	2424	chr11:29233312:+	CTD-3012A18.1	8905	chr11:29573907:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0.0086	RP11-466I1.1->chr11:29181503-29288281:+,CTD-3012A18.1->chr11:29540623-29574186:+	MPP89_PLEURA	1	1	0.0172	TRUE	0	2	0	4	2	TRUE	ACH-000319
NCIH2228_LUNG	DCBLD2--STXBP5L	136	28	DCBLD2	19623	chr3:98526925:-	STXBP5L	53859	chr3:121037322:+	ONLY_REF_SPLICE	YES	401	0	0.29	1	1.2849	0.2645	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,STXBP5L->chr3:120626919-121143608:+,syntaxin_binding_protein_5_like	NCIH2228_LUNG	0.29	1	1.5494	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	EML4--ALK	41	27	EML4	8523	chr2:42492091:+	ALK	58055	chr2:29446394:-	ONLY_REF_SPLICE	YES	99	0	0.41	1	0.3874	0.2551	Cosmic{samples=10751,mutations=680,papers=477},YOSHIHARA_TCGA_num_samples[LUAD:4|THCA:1],chimerdb_pubmed{nonsmallcell lung cancer (NSCLC),nonsmall cell lung cancers (NSCLC),lung cancer,nonsmall cell lung cancer (NSCLC),nonsmall cell lung carcinoma,lung cancers,nonsmallcell lung cancers (NSCLC)},{Klijn_CCL:Lung=1},EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	NCIH2228_LUNG	0.41	1	0.6425	TRUE	0	2	0	2	2	TRUE	ACH-000447
NCIH2228_LUNG	KATNAL1--ZC3H13	43	3	KATNAL1	1154	chr13:30881468:-	ZC3H13	32024	chr13:46563232:-	ONLY_REF_SPLICE	YES	4	16	0.92	0.74	0.4062	0.0283	KATNAL1->chr13:30776767-30881621:-,katanin_catalytic_subunit_A1_like_1,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	NCIH2228_LUNG	0.74	0.92	0.4345	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	ALK--PTPN3	35	4	ALK	15358	chr2:29497965:-	PTPN3	41075	chr9:112219679:-	ONLY_REF_SPLICE	YES	0	21	1	0.65	0.3307	0.0378	ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-,PTPN3->chr9:112137746-112260590:-,protein_tyrosine_phosphatase,_non-receptor_type_3	NCIH2228_LUNG	0.65	1	0.3685	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	XPA--RP11-15J10.8	25	0	XPA	8436	chr9:100437771:-	RP11-15J10.8	15534	chr9:70114081:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2362	0	XPA->Oncogene{Bushman},chr9:100437191-100459639:-,xeroderma_pigmentosum,_complementation_group_A,RP11-15J10.8->chr9:70113593-70124467:-	NCIH2228_LUNG	1	1	0.2362	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	PTCH1--LUC7L2	22	5	PTCH1	4844	chr9:98268689:-	LUC7L2	43107	chr7:139060808:+	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.2078	0.0472	{Klijn_CCL:Lung=1},PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	NCIH2228_LUNG	0.96	0.96	0.255	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	EML4--ALK	14	21	EML4	8303	chr2:42491871:+	ALK	58055	chr2:29446394:-	ONLY_REF_SPLICE	YES	93	0	0.27	1	0.1323	0.1984	Cosmic{samples=10751,mutations=680,papers=477},YOSHIHARA_TCGA_num_samples[LUAD:4|THCA:1],chimerdb_pubmed{nonsmallcell lung cancer (NSCLC),nonsmall cell lung cancers (NSCLC),lung cancer,nonsmall cell lung cancer (NSCLC),nonsmall cell lung carcinoma,lung cancers,nonsmallcell lung cancers (NSCLC)},{Klijn_CCL:Lung=1},EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	NCIH2228_LUNG	0.27	1	0.3307	TRUE	0	2	0	2	2	TRUE	ACH-000447
NCIH2228_LUNG	SND1--CFTR	18	5	SND1	24978	chr7:127631109:+	CFTR	68632	chr7:117267576:+	ONLY_REF_SPLICE	YES	108	0	0.18	1	0.1701	0.0472	{Klijn_CCL:Lung=1},SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,CFTR->chr7:117105838-117356025:+,cystic_fibrosis_transmembrane_conductance_regulator	NCIH2228_LUNG	0.18	1	0.2173	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	ANP32B--SEPT7	11	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1039	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	NCIH2228_LUNG	1	1	0.1039	TRUE	1	1	0	18	1	TRUE	ACH-000447
NCIH2228_LUNG	FTL--RPL39	10	0	FTL	1095	chr19:49468652:+	RPL39	5592	chrX:118925593:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0945	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH2228_LUNG	1	1	0.0945	TRUE	0	0	0	3	0	TRUE	ACH-000447
NCIH2228_LUNG	KATNAL1--ZC3H13	9	3	KATNAL1	1545	chr13:30881077:-	ZC3H13	32024	chr13:46563232:-	ONLY_REF_SPLICE	YES	7	16	0.63	0.43	0.085	0.0283	KATNAL1->chr13:30776767-30881621:-,katanin_catalytic_subunit_A1_like_1,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	NCIH2228_LUNG	0.43	0.63	0.1133	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	PTCH1--LUC7L2	6	6	PTCH1	4844	chr9:98268689:-	LUC7L2	41986	chr7:139030247:+	ONLY_REF_SPLICE	YES	1	45	0.92	0.21	0.0567	0.0567	{Klijn_CCL:Lung=1},PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	NCIH2228_LUNG	0.21	0.92	0.1134	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	COX7A2L--MAP4K3	5	2	COX7A2L	16383	chr2:42560807:-	MAP4K3	30949	chr2:39542529:-	INCL_NON_REF_SPLICE	YES	0	26	1	0.21	0.0472	0.0189	COX7A2L->chr2:42560686-42652228:-,cytochrome_c_oxidase_subunit_7A2_like,MAP4K3->chr2:39476407-39664453:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_3	NCIH2228_LUNG	0.21	1	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	RP11-448A19.1--SND1	5	1	RP11-448A19.1	1269	chr7:129251203:-	SND1	17043	chr7:127334882:+	INCL_NON_REF_SPLICE	YES	3	141	0.67	0.04	0.0472	0.0094	RP11-448A19.1->chr7:129244389-129251471:-,SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1	NCIH2228_LUNG	0.04	0.67	0.0566	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	DCBLD2--STXBP5L	1	15	DCBLD2	19623	chr3:98526925:-	STXBP5L	56018	chr3:121097563:+	ONLY_REF_SPLICE	YES	401	0	0.04	1	0.0094	0.1417	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,STXBP5L->chr3:120626919-121143608:+,syntaxin_binding_protein_5_like	NCIH2228_LUNG	0.04	1	0.1511	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	KATNAL1--ZC3H13	3	3	KATNAL1	1725	chr13:30880897:-	ZC3H13	32024	chr13:46563232:-	INCL_NON_REF_SPLICE	YES	6	16	0.5	0.27	0.0283	0.0283	KATNAL1->chr13:30776767-30881621:-,katanin_catalytic_subunit_A1_like_1,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	NCIH2228_LUNG	0.27	0.5	0.0566	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	PTPN3--ALK	3	1	PTPN3	2247	chr9:112225577:-	ALK	53099	chr2:29498362:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0283	0.0094	PTPN3->chr9:112137746-112260590:-,protein_tyrosine_phosphatase,_non-receptor_type_3,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	NCIH2228_LUNG	0.18	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	FTL--RPL39	3	0	FTL	1104	chr19:49468661:+	RPL39	5600	chrX:118925585:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH2228_LUNG	1	1	0.0283	TRUE	0	0	0	3	0	TRUE	ACH-000447
NCIH2228_LUNG	FTL--RPL39	3	0	FTL	1116	chr19:49468673:+	RPL39	5614	chrX:118925571:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH2228_LUNG	1	1	0.0283	TRUE	0	0	0	3	0	TRUE	ACH-000447
NCIH2228_LUNG	SLC7A5--RPL39	3	0	SLC7A5	8058	chr16:87871484:-	RPL39	17596	chrX:118925591:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH2228_LUNG	1	1	0.0283	TRUE	0	0	0	5	0	TRUE	ACH-000447
NCIH2228_LUNG	XPA--RP11-15J10.8	3	0	XPA	8431	chr9:100437776:-	RP11-15J10.8	15534	chr9:70114081:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	XPA->Oncogene{Bushman},chr9:100437191-100459639:-,xeroderma_pigmentosum,_complementation_group_A,RP11-15J10.8->chr9:70113593-70124467:-	NCIH2228_LUNG	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	CCDC122--FOXN2	2	0	CCDC122	2147	chr13:44448978:-	FOXN2	18270	chr2:48573340:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,FOXN2->chr2:48541776-48606433:+,forkhead_box_N2	NCIH2228_LUNG	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	CTNNA1--MATR3	2	0	CTNNA1	17161	chr5:138163407:+	MATR3	58734	chr5:138650364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	NCIH2228_LUNG	1	1	0.0189	TRUE	0	0	0	6	0	TRUE	ACH-000447
NCIH2228_LUNG	KATNAL1--ZC3H13	1	3	KATNAL1	1772	chr13:30880850:-	ZC3H13	32024	chr13:46563232:-	ONLY_REF_SPLICE	YES	6	16	0.4	0.2	0.0094	0.0283	KATNAL1->chr13:30776767-30881621:-,katanin_catalytic_subunit_A1_like_1,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	NCIH2228_LUNG	0.2	0.4	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	PTCH1--LUC7L2	1	3	PTCH1	4844	chr9:98268689:-	LUC7L2	44202	chr7:139083345:+	ONLY_REF_SPLICE	YES	1	31	0.8	0.11	0.0094	0.0283	{Klijn_CCL:Lung=1},PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	NCIH2228_LUNG	0.11	0.8	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000447
HS852T_SKIN	C7orf50--FKBP9L	467	80	C7orf50	6340	chr7:1067894:-	FKBP9L	22188	chr7:55759193:-	ONLY_REF_SPLICE	YES	310	13	0.64	0.98	5.7885	0.9916	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,FKBP9L->chr7:55748767-55780945:-	HS852T_SKIN	0.64	0.98	6.7801	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	TMEM135--CCDC81	298	186	TMEM135	9064	chr11:86947726:+	CCDC81	38632	chr11:86125831:+	ONLY_REF_SPLICE	YES	78	40	0.86	0.92	3.6937	2.3055	{Klijn_CCL:Skin=1},TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81	HS852T_SKIN	0.86	0.92	5.9992	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ARRB1--SLCO2B1	288	48	ARRB1	1242	chr11:75062632:-	SLCO2B1	32881	chr11:74873700:+	ONLY_REF_SPLICE	YES	29	15	0.92	0.96	3.5698	0.595	LOCAL_INVERSION:-:+:[57632],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.92	0.96	4.1648	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PRKRIR--SLCO2B1	265	100	PRKRIR	1224	chr11:76091792:-	SLCO2B1	23746	chr11:74873700:+	ONLY_REF_SPLICE	YES	522	15	0.41	0.96	3.2847	1.2395	PRKRIR->chr11:76061000-76092015:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.41	0.96	4.5242	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NRP1--RP11-79C23.1	160	39	NRP1	4012	chr10:33619636:-	RP11-79C23.1	38302	chr15:20087530:+	ONLY_REF_SPLICE	YES	87	12	0.7	0.94	1.9832	0.4834	NRP1->chr10:33466420-33625190:-,neuropilin_1,RP11-79C23.1->chr15:20083769-20093074:+	HS852T_SKIN	0.7	0.94	2.4666	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	TMEM60--MAGI2	133	29	TMEM60	1327	chr7:77427571:-	MAGI2	22831	chr7:77830510:-	ONLY_REF_SPLICE	YES	40	3	0.8	0.98	1.6485	0.3595	TMEM60->chr7:77423045-77427897:-,transmembrane_protein_60,MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2	HS852T_SKIN	0.8	0.98	2.008	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	KLHL7--TPCN2	119	27	KLHL7	1413	chr7:23145765:+	TPCN2	27419	chr11:68830352:+	ONLY_REF_SPLICE	YES	61	264	0.71	0.36	1.475	0.3347	{Klijn_CCL:Skin=1},KLHL7->chr7:23145353-23217533:+,kelch_like_family_member_7,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	HS852T_SKIN	0.36	0.71	1.8097	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PPP6R3--C11orf30	88	17	PPP6R3	1110	chr11:68228295:+	C11orf30	40581	chr11:76157944:+	ONLY_REF_SPLICE	YES	2	146	0.98	0.42	1.0908	0.2107	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	HS852T_SKIN	0.42	0.98	1.3015	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	UVRAG--MYEOV	72	29	UVRAG	1358	chr11:75526569:+	MYEOV	38850	chr11:69156278:+	ONLY_REF_SPLICE	YES	498	648	0.17	0.13	0.8924	0.3595	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed	HS852T_SKIN	0.13	0.17	1.2519	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ITGA1--RP11-160H12.2	74	15	ITGA1	4538	chr5:52145319:+	RP11-160H12.2	61633	chr11:83436235:+	ONLY_REF_SPLICE	YES	25	2	0.78	0.98	0.9172	0.1859	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-160H12.2->chr11:83354645-83436433:+	HS852T_SKIN	0.78	0.98	1.1031	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NRP1--RP11-79C23.1	58	69	NRP1	4012	chr10:33619636:-	RP11-79C23.1	35775	chr15:20083807:+	INCL_NON_REF_SPLICE	YES	87	0	0.59	1	0.7189	0.8553	NRP1->chr10:33466420-33625190:-,neuropilin_1,RP11-79C23.1->chr15:20083769-20093074:+	HS852T_SKIN	0.59	1	1.5742	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NF1--AC084809.2	65	35	NF1	1443	chr17:29422387:+	AC084809.2	78700	chr17:31204862:+	ONLY_REF_SPLICE	YES	9	0	0.92	1	0.8057	0.4338	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,AC084809.2->chr17:31203777-31205655:+	HS852T_SKIN	0.92	1	1.2395	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PPP6R3--CTD-2013M15.1	65	7	PPP6R3	1110	chr11:68228295:+	CTD-2013M15.1	40801	chr5:45895936:+	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.8057	0.0868	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,CTD-2013M15.1->chr5:45890318-45896072:+	HS852T_SKIN	0.97	1	0.8925	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	C7orf50--FKBP9L	38	87	C7orf50	7633	chr7:1066371:-	FKBP9L	22188	chr7:55759193:-	INCL_NON_REF_SPLICE	YES	542	13	0.19	0.91	0.471	1.0784	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,FKBP9L->chr7:55748767-55780945:-	HS852T_SKIN	0.19	0.91	1.5494	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ARRB1--SLCO2B1	53	21	ARRB1	1242	chr11:75062632:-	SLCO2B1	35288	chr11:74876832:+	ONLY_REF_SPLICE	YES	29	261	0.72	0.22	0.6569	0.2603	LOCAL_INVERSION:-:+:[57632],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.22	0.72	0.9172	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	MGA--NIPA1	57	3	MGA	1366	chr15:41913787:+	NIPA1	44706	chr15:23062319:-	ONLY_REF_SPLICE	YES	1	16	0.98	0.79	0.7065	0.0372	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,NIPA1->chr15:23043277-23100005:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_1	HS852T_SKIN	0.79	0.98	0.7437	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	TMEM135--CCDC81	6	187	TMEM135	9064	chr11:86947726:+	CCDC81	38171	chr11:86125370:+	INCL_NON_REF_SPLICE	YES	78	1	0.71	0.99	0.0744	2.3179	{Klijn_CCL:Skin=1},TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81	HS852T_SKIN	0.71	0.99	2.3923	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	DTX2P1--PRKRIP1	44	4	DTX2P1	11762	chr7:76641336:+	PRKRIP1	25356	chr7:102016270:+	ONLY_REF_SPLICE	YES	3	19	0.94	0.72	0.5454	0.0496	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HS852T_SKIN	0.72	0.94	0.595	TRUE	0	0	0	3	0	TRUE	ACH-000274
HS852T_SKIN	PIGG--CHRDL2	37	29	PIGG	7006	chr4:501382:+	CHRDL2	31598	chr11:74424524:-	ONLY_REF_SPLICE	YES	65	0	0.5	1	0.4586	0.3595	{Klijn_CCL:Skin=1},PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	HS852T_SKIN	0.5	1	0.8181	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	FGF19--KLHL7	40	11	FGF19	2382	chr11:69518029:-	KLHL7	10920	chr7:23163396:+	ONLY_REF_SPLICE	YES	2	72	0.96	0.41	0.4958	0.1363	{Klijn_CCL:Skin=1},FGF19->ArcherDX_panel,FoundationOne_panel,chr11:69513000-69519410:-,fibroblast_growth_factor_19,KLHL7->chr7:23145353-23217533:+,kelch_like_family_member_7	HS852T_SKIN	0.41	0.96	0.6321	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PPP6R3--RP11-111M22.2	34	10	PPP6R3	1110	chr11:68228295:+	RP11-111M22.2	49929	chr11:76121906:+	ONLY_REF_SPLICE	YES	2	7	0.96	0.86	0.4214	0.124	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,RP11-111M22.2->chr11:76092357-76125663:+	HS852T_SKIN	0.86	0.96	0.5454	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RNF169--SLCO2B1	28	3	RNF169	1515	chr11:74460427:+	SLCO2B1	22612	chr11:74873700:+	ONLY_REF_SPLICE	YES	0	15	1	0.67	0.3471	0.0372	RNF169->chr11:74459913-74553458:+,ring_finger_protein_169,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.67	1	0.3843	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PIGG--CHRDL2	12	39	PIGG	8148	chr4:502759:+	CHRDL2	31598	chr11:74424524:-	ONLY_REF_SPLICE	YES	28	0	0.65	1	0.1487	0.4834	{Klijn_CCL:Skin=1},PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	HS852T_SKIN	0.65	1	0.6321	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	TBC1D1--DGKB	19	5	TBC1D1	24734	chr4:38097711:+	DGKB	65716	chr7:14517850:-	ONLY_REF_SPLICE	YES	132	0	0.15	1	0.2355	0.062	TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+,DGKB->chr7:14184674-15014402:-,diacylglycerol_kinase_beta	HS852T_SKIN	0.15	1	0.2975	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	MGA--NIPA1	18	3	MGA	1075	chr15:41913496:+	NIPA1	44706	chr15:23062319:-	ONLY_REF_SPLICE	YES	0	16	1	0.57	0.2231	0.0372	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,NIPA1->chr15:23043277-23100005:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_1	HS852T_SKIN	0.57	1	0.2603	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PIGG--CHRDL2	9	36	PIGG	8099	chr4:502710:+	CHRDL2	31598	chr11:74424524:-	INCL_NON_REF_SPLICE	YES	33	0	0.58	1	0.1116	0.4462	{Klijn_CCL:Skin=1},PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	HS852T_SKIN	0.58	1	0.5578	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	GPSM2--CSF1	15	11	GPSM2	16836	chr1:109472597:+	CSF1	29585	chr1:110464469:+	INCL_NON_REF_SPLICE	YES	44	144	0.37	0.15	0.1859	0.1363	GPSM2->G-protein_signaling_modulator_2,chr1:109417972-109477167:+,CSF1->Oncogene{Bushman},chr1:110452864-110473614:+,colony_stimulating_factor_1	HS852T_SKIN	0.15	0.37	0.3222	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP11-111M22.2--TPCN2	15	8	RP11-111M22.2	1981	chr11:76093337:+	TPCN2	21843	chr11:68825046:+	ONLY_REF_SPLICE	YES	122	274	0.16	0.08	0.1859	0.0992	RP11-111M22.2->chr11:76092357-76125663:+,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	HS852T_SKIN	0.08	0.16	0.2851	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NRP1--RP11-79C23.1	2	53	NRP1	4012	chr10:33619636:-	RP11-79C23.1	36052	chr15:20084084:+	ONLY_REF_SPLICE	NO	87	9	0.39	0.86	0.0248	0.6569	NRP1->chr10:33466420-33625190:-,neuropilin_1,RP11-79C23.1->chr15:20083769-20093074:+	HS852T_SKIN	0.39	0.86	0.6817	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ITGA1--RP11-160H12.2	10	19	ITGA1	4538	chr5:52145319:+	RP11-160H12.2	60477	chr11:83431873:+	ONLY_REF_SPLICE	YES	25	0	0.54	1	0.124	0.2355	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-160H12.2->chr11:83354645-83436433:+	HS852T_SKIN	0.54	1	0.3595	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NF1--AC084809.3	13	6	NF1	1443	chr17:29422387:+	AC084809.3	78144	chr17:31233209:+	ONLY_REF_SPLICE	YES	9	0	0.68	1	0.1611	0.0744	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,AC084809.3->chr17:31232680-31233602:+	HS852T_SKIN	0.68	1	0.2355	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NIPA1--RAD51	13	5	NIPA1	4187	chr15:23086234:-	RAD51	22435	chr15:40990955:+	ONLY_REF_SPLICE	YES	16	16	0.53	0.53	0.1611	0.062	NIPA1->chr15:23043277-23100005:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_1,RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+	HS852T_SKIN	0.53	0.53	0.2231	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PIGG--CHRDL2	8	23	PIGG	8148	chr4:502759:+	CHRDL2	32692	chr11:74422036:-	ONLY_REF_SPLICE	YES	28	2	0.53	0.94	0.0992	0.2851	{Klijn_CCL:Skin=1},PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	HS852T_SKIN	0.53	0.94	0.3843	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	GRK4--FZD4	12	0	GRK4	1515	chr4:2965849:+	FZD4	26980	chr11:86666049:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1487	0	GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+,FZD4->chr11:86656721-86666433:-,frizzled_class_receptor_4	HS852T_SKIN	1	1	0.1487	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	KLHL7--TPCN2	5	28	KLHL7	2061	chr7:23146413:+	TPCN2	27419	chr11:68830352:+	ONLY_REF_SPLICE	YES	87	264	0.28	0.11	0.062	0.3471	{Klijn_CCL:Skin=1},KLHL7->chr7:23145353-23217533:+,kelch_like_family_member_7,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	HS852T_SKIN	0.11	0.28	0.4091	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NRP1--RP11-79C23.1	1	42	NRP1	4012	chr10:33619636:-	RP11-79C23.1	37226	chr15:20086454:+	ONLY_REF_SPLICE	YES	87	16	0.33	0.73	0.0124	0.5206	NRP1->chr10:33466420-33625190:-,neuropilin_1,RP11-79C23.1->chr15:20083769-20093074:+	HS852T_SKIN	0.33	0.73	0.533	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ITGA1--RP11-160H12.2	6	20	ITGA1	4538	chr5:52145319:+	RP11-160H12.2	58595	chr11:83403972:+	ONLY_REF_SPLICE	YES	25	0	0.51	1	0.0744	0.2479	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-160H12.2->chr11:83354645-83436433:+	HS852T_SKIN	0.51	1	0.3223	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	TPM1--CD74	11	0	TPM1	2483	chr15:63336313:+	CD74	21379	chr5:149792303:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1363	0	TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha),CD74->CD74_molecule,Oncogene{Bushman},chr5:149781200-149792492:-	HS852T_SKIN	1	1	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP11-111M22.2--GAB2	10	1	RP11-111M22.2	1981	chr11:76093337:+	GAB2	23302	chr11:77991947:-	ONLY_REF_SPLICE	YES	122	26	0.08	0.3	0.124	0.0124	RP11-111M22.2->chr11:76092357-76125663:+,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	HS852T_SKIN	0.08	0.3	0.1364	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ERC1--ADIPOR2	8	5	ERC1	25153	chr12:1372331:+	ADIPOR2	49568	chr12:1863424:+	ONLY_REF_SPLICE	YES	16	36	0.45	0.27	0.0992	0.062	ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	HS852T_SKIN	0.27	0.45	0.1612	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	GDPD5--CCM2	8	5	GDPD5	30969	chr11:75147981:-	CCM2	45262	chr7:45108042:+	ONLY_REF_SPLICE	YES	126	84	0.09	0.13	0.0992	0.062	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,CCM2->CCM2_scaffolding_protein,chr7:45039074-45116068:+	HS852T_SKIN	0.09	0.13	0.1612	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ITGA1--RP11-160H12.2	4	20	ITGA1	4538	chr5:52145319:+	RP11-160H12.2	56610	chr11:83395492:+	ONLY_REF_SPLICE	YES	25	0	0.49	1	0.0496	0.2479	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-160H12.2->chr11:83354645-83436433:+	HS852T_SKIN	0.49	1	0.2975	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	SNX10--EVX1	8	2	SNX10	1166	chr7:26331706:+	EVX1	18783	chr7:27284667:+	ONLY_REF_SPLICE	YES	178	0	0.05	1	0.0992	0.0248	SNX10->chr7:26331541-26413949:+,sorting_nexin_10,EVX1->chr7:27282164-27290112:+,even-skipped_homeobox_1	HS852T_SKIN	0.05	1	0.124	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	SNX10--HOTTIP	8	2	SNX10	1166	chr7:26331706:+	HOTTIP	20858	chr7:27244331:+	ONLY_REF_SPLICE	YES	178	1	0.05	0.91	0.0992	0.0248	SNX10->chr7:26331541-26413949:+,sorting_nexin_10,HOTTIP->HOXA_distal_transcript_antisense_RNA,chr7:27238194-27246878:+	HS852T_SKIN	0.05	0.91	0.124	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	SNX13--PHF14	6	8	SNX13	38502	chr7:17833875:-	PHF14	50000	chr7:11053374:+	INCL_NON_REF_SPLICE	YES	98	56	0.12	0.2	0.0744	0.0992	SNX13->chr7:17830385-17980124:-,sorting_nexin_13,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HS852T_SKIN	0.12	0.2	0.1736	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PHF14--TWIST1	7	1	PHF14	25633	chr7:11151094:+	TWIST1	34924	chr7:19095788:-	ONLY_REF_SPLICE	YES	30	1	0.21	0.89	0.0868	0.0124	PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+,TWIST1->Oncogene{Bushman},chr7:19060614-19157295:-,twist_family_bHLH_transcription_factor_1	HS852T_SKIN	0.21	0.89	0.0992	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PIGG--CHRDL2	6	5	PIGG	2402	chr4:494390:+	CHRDL2	31598	chr11:74424524:-	ONLY_REF_SPLICE	YES	104	0	0.1	1	0.0744	0.062	{Klijn_CCL:Skin=1},PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	HS852T_SKIN	0.1	1	0.1364	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ITGA1--RP11-160H12.2	2	20	ITGA1	4538	chr5:52145319:+	RP11-160H12.2	57687	chr11:83403064:+	ONLY_REF_SPLICE	YES	25	0	0.47	1	0.0248	0.2479	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-160H12.2->chr11:83354645-83436433:+	HS852T_SKIN	0.47	1	0.2727	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	TPCN2--GAB2	7	0	TPCN2	4647	chr11:68825162:+	GAB2	30365	chr11:77991947:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0868	0	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	HS852T_SKIN	1	1	0.0868	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PPP6R3--RP11-111M22.2	2	14	PPP6R3	1110	chr11:68228295:+	RP11-111M22.2	48783	chr11:76119521:+	ONLY_REF_SPLICE	YES	2	1	0.89	0.94	0.0248	0.1735	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,RP11-111M22.2->chr11:76092357-76125663:+	HS852T_SKIN	0.89	0.94	0.1983	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	CCDC81--ISL1	4	2	CCDC81	3726	chr11:86098714:+	ISL1	28643	chr5:50689328:+	ONLY_REF_SPLICE	YES	0	14	1	0.3	0.0496	0.0248	CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81,ISL1->ISL_LIM_homeobox_1,chr5:50678921-50690564:+	HS852T_SKIN	0.3	1	0.0744	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	BMPER--TBRG4	4	1	BMPER	9772	chr7:34014396:+	TBRG4	36318	chr7:45143042:-	ONLY_REF_SPLICE	YES	1	106	0.83	0.05	0.0496	0.0124	BMPER->BMP_binding_endothelial_regulator,chr7:33944523-34195484:+,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	HS852T_SKIN	0.05	0.83	0.062	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ACER3--RP11-736K20.5	4	0	ACER3	11326	chr11:76709865:+	RP11-736K20.5	27053	chr11:86633140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0496	0	ACER3->alkaline_ceramidase_3,chr11:76571911-76737841:+,RP11-736K20.5->chr11:86603256-86636079:-	HS852T_SKIN	1	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NF1--AC084809.2	1	12	NF1	1443	chr17:29422387:+	AC084809.2	79156	chr17:31205318:+	ONLY_REF_SPLICE	YES	9	9	0.59	0.59	0.0124	0.1487	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,AC084809.2->chr17:31203777-31205655:+	HS852T_SKIN	0.59	0.59	0.1611	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP11-111M22.2--TPCN2	4	0	RP11-111M22.2	1062	chr11:76092418:+	TPCN2	21843	chr11:68825046:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0496	0	RP11-111M22.2->chr11:76092357-76125663:+,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	HS852T_SKIN	1	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	GRK4--RP11-736K20.5	2	6	GRK4	1515	chr4:2965849:+	RP11-736K20.5	27664	chr11:86633140:-	ONLY_REF_SPLICE	YES	52	0	0.13	1	0.0248	0.0744	GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+,RP11-736K20.5->chr11:86603256-86636079:-	HS852T_SKIN	0.13	1	0.0992	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	FKBP9L--RP11-802H3.2	3	1	FKBP9L	6413	chr7:55759007:-	RP11-802H3.2	16908	chr4:33439223:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0372	0.0124	FKBP9L->chr7:55748767-55780945:-,RP11-802H3.2->chr4:33435132-33439499:+	HS852T_SKIN	0.67	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	FKBP9L--RP11-802H3.2	3	1	FKBP9L	6413	chr7:55759007:-	RP11-802H3.2	15827	chr4:33435106:+	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0372	0.0124	FKBP9L->chr7:55748767-55780945:-,RP11-802H3.2->chr4:33435132-33439499:+	HS852T_SKIN	0.67	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ITGA1--RP11-160H12.2	2	5	ITGA1	1519	chr5:52084248:+	RP11-160H12.2	61633	chr11:83436235:+	ONLY_REF_SPLICE	YES	86	2	0.08	0.78	0.0248	0.062	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-160H12.2->chr11:83354645-83436433:+	HS852T_SKIN	0.08	0.78	0.0868	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ITGA1--RP11-79E3.3	3	1	ITGA1	4538	chr5:52145319:+	RP11-79E3.3	54059	chr4:33949146:-	ONLY_REF_SPLICE	YES	25	0	0.14	1	0.0372	0.0124	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-79E3.3->chr4:33777969-34041515:-	HS852T_SKIN	0.14	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ARRB1--SLCO2B1	3	0	ARRB1	1242	chr11:75062632:-	SLCO2B1	39474	chr11:74899181:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_INVERSION:-:+:[57632],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	TUBB4B--FTH1	3	0	TUBB4B	1128	chr9:140135792:+	FTH1	6697	chr11:61734931:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	HS852T_SKIN	1	1	0.0372	TRUE	0	0	0	6	0	TRUE	ACH-000274
HS852T_SKIN	TMEM60--MAGI2	2	3	TMEM60	1327	chr7:77427571:-	MAGI2	28322	chr7:77807419:-	ONLY_REF_SPLICE	YES	40	26	0.11	0.16	0.0248	0.0372	TMEM60->chr7:77423045-77427897:-,transmembrane_protein_60,MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2	HS852T_SKIN	0.11	0.16	0.062	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	CCDC81--ISL1	2	2	CCDC81	3713	chr11:86098701:+	ISL1	28643	chr5:50689328:+	ONLY_REF_SPLICE	YES	0	14	1	0.22	0.0248	0.0248	CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81,ISL1->ISL_LIM_homeobox_1,chr5:50678921-50690564:+	HS852T_SKIN	0.22	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	CHIC2--SCFD2	2	0	CHIC2	2860	chr4:54915122:-	SCFD2	14070	chr4:54011749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	CHIC2->Oncogene{Bushman},chr4:54875956-54930857:-,cysteine_rich_hydrophobic_domain_2,SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2	HS852T_SKIN	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	EPS8--STRAP	2	0	EPS8	3576	chr12:15942095:-	STRAP	37698	chr12:16042862:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_INVERSION:-:+:[62],EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,STRAP->chr12:16035325-16056412:+,serine/threonine_kinase_receptor_associated_protein	HS852T_SKIN	1	1	0.0248	TRUE	0	2	0	2	1	TRUE	ACH-000274
HS852T_SKIN	LIN9--MATR3	2	0	LIN9	4274	chr1:226485420:-	MATR3	39400	chr5:138651765:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component,MATR3->chr5:138609441-138667360:+,matrin_3	HS852T_SKIN	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP11-252A24.2--SF3B3	2	0	RP11-252A24.2	1176	chr16:74401963:-	SF3B3	42640	chr16:70598968:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	RP11-252A24.2->chr16:74366300-74402138:-,SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3	HS852T_SKIN	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP11-444D3.1--BCAT1	2	0	RP11-444D3.1	4602	chr12:24521497:-	BCAT1	21307	chr12:25002883:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	RP11-444D3.1->chr12:24366190-24715524:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	HS852T_SKIN	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	VPS13D--RHEB	2	0	VPS13D	76595	chr1:12476880:+	RHEB	97822	chr7:151174501:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	VPS13D->chr1:12290124-12572099:+,vacuolar_protein_sorting_13_homolog_D,RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-	HS852T_SKIN	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	CAPN5--PGM2L1	1	2	CAPN5	6835	chr11:76804859:+	PGM2L1	25787	chr11:74082862:-	ONLY_REF_SPLICE	YES	36	7	0.08	0.3	0.0124	0.0248	CAPN5->calpain_5,chr11:76777979-76837201:+,PGM2L1->chr11:74041363-74109518:-,phosphoglucomutase_2-like_1	HS852T_SKIN	0.08	0.3	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000274
SF126_CENTRAL_NERVOUS_SYSTEM	ADAR--PIK3CD	76	1	ADAR	1145	chr1:154600331:-	PIK3CD	24700	chr1:9770482:+	ONLY_REF_SPLICE	YES	1	2	0.99	0.97	0.9555	0.0126	ADAR->adenosine_deaminase,_RNA-specific,chr1:154554538-154600475:-,PIK3CD->Oncogene{Bushman},chr1:9711790-9789172:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_delta	SF126_CENTRAL_NERVOUS_SYSTEM	0.97	0.99	0.9681	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	CNOT1--SLC38A7	34	13	CNOT1	9518	chr16:58619242:-	SLC38A7	52514	chr16:58718082:-	ONLY_REF_SPLICE	YES	94	2	0.33	0.96	0.4275	0.1634	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	SF126_CENTRAL_NERVOUS_SYSTEM	0.33	0.96	0.5909	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	AHCYL1--KIAA1324	20	11	AHCYL1	6702	chr1:110555621:+	KIAA1324	21518	chr1:109704516:+	ONLY_REF_SPLICE	YES	296	1	0.09	0.97	0.2515	0.1383	AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+,KIAA1324->KIAA1324,chr1:109656301-109749401:+	SF126_CENTRAL_NERVOUS_SYSTEM	0.09	0.97	0.3898	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	AHCYL1--KIAA1324	7	8	AHCYL1	6702	chr1:110555621:+	KIAA1324	22639	chr1:109707121:+	ONLY_REF_SPLICE	YES	296	2	0.05	0.88	0.088	0.1006	AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+,KIAA1324->KIAA1324,chr1:109656301-109749401:+	SF126_CENTRAL_NERVOUS_SYSTEM	0.05	0.88	0.1886	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	HNRNPA2B1--ACTB	9	0	HNRNPA2B1	1919	chr7:26240231:-	ACTB	20135	chr7:5568099:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1132	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.1132	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	CTB-113P19.1--FTL	5	0	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0629	TRUE	0	2	0	13	2	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	CNOT1--SLC38A7	2	9	CNOT1	9518	chr16:58619242:-	SLC38A7	52609	chr16:58717987:-	ONLY_REF_SPLICE	YES	94	17	0.1	0.39	0.0251	0.1132	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	SF126_CENTRAL_NERVOUS_SYSTEM	0.1	0.39	0.1383	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	TFDP2--HDAC8	4	0	TFDP2	4758	chr3:141811903:-	HDAC8	49318	chrX:71571688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0503	0	TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2,HDAC8->chrX:71549366-71792953:-,histone_deacetylase_8	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	ZBTB20--NAALADL2	3	2	ZBTB20	8959	chr3:114619151:-	NAALADL2	60106	chr3:174814580:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0377	0.0251	ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	SF126_CENTRAL_NERVOUS_SYSTEM	0.71	1	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	ADAR--PIK3CD	3	0	ADAR	1046	chr1:154600430:-	PIK3CD	24700	chr1:9770482:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	ADAR->adenosine_deaminase,_RNA-specific,chr1:154554538-154600475:-,PIK3CD->Oncogene{Bushman},chr1:9711790-9789172:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_delta	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	INSR--TPM4	2	0	INSR	25264	chr19:7120631:-	TPM4	37859	chr19:16186857:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	INSR->chr19:7112266-7294045:-,insulin_receptor,TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RB1--CAB39L	2	0	RB1	12822	chr13:48942740:+	CAB39L	48308	chr13:49918374:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,CAB39L->calcium_binding_protein_39_like,chr13:49882786-50018262:-	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	TRNAU1AP--MRPL20	2	0	TRNAU1AP	1653	chr1:28880249:+	MRPL20	18039	chr1:1337981:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1,MRPL20->chr1:1337288-1342693:-,mitochondrial_ribosomal_protein_L20	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0251	TRUE	1	1	0	8	1	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	CAB39L--RB1	1	1	CAB39L	16255	chr13:49913813:-	RB1	43010	chr13:49027129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0126	0.0126	CAB39L->calcium_binding_protein_39_like,chr13:49882786-50018262:-,RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	MIR181A1HG--NAV1	1	1	MIR181A1HG	1204	chr1:198906355:-	NAV1	19118	chr1:201749549:+	ONLY_REF_SPLICE	YES	0	50	1	0.04	0.0126	0.0126	MIR181A1HG->MIR181A1_host_gene,chr1:198776622-198906558:-,NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1	SF126_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	PIK3CA--CD86	1	1	PIK3CA	18893	chr3:178948164:+	CD86	37625	chr3:121838285:+	ONLY_REF_SPLICE	YES	25	0	0.07	1	0.0126	0.0126	PIK3CA->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr3:178865902-178957881:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_alpha,CD86->CD86_molecule,chr3:121774213-121839983:+	SF126_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000609
SKOV3_OVARY	LRRFIP1--MLPH	333	135	LRRFIP1	22098	chr2:238664830:+	MLPH	65798	chr2:238462209:+	ONLY_REF_SPLICE	YES	202	7	0.7	0.99	4.7975	1.945	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.7	0.99	6.7425	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	PPFIBP1--SMCO2	199	76	PPFIBP1	1935	chr12:27677298:+	SMCO2	50047	chr12:27648613:+	ONLY_REF_SPLICE	YES	46	0	0.86	1	2.867	1.0949	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	SKOV3_OVARY	0.86	1	3.9619	TRUE	0	3	0	3	2	TRUE	ACH-000811
SKOV3_OVARY	MTCH1--RP5-1021I20.1	174	53	MTCH1	1446	chr6:36953629:-	RP5-1021I20.1	15619	chr14:74255730:+	ONLY_REF_SPLICE	YES	173	1	0.57	1	2.5068	0.7636	MTCH1->chr6:36935917-36954074:-,mitochondrial_carrier_1,RP5-1021I20.1->chr14:74254063-74269973:+	SKOV3_OVARY	0.57	1	3.2704	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	UBE2G1--ZZEF1	149	53	UBE2G1	5880	chr17:4210316:-	ZZEF1	72022	chr17:3913051:-	ONLY_REF_SPLICE	YES	0	0	1	1	2.1467	0.7636	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKOV3_OVARY	1	1	2.9103	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SPINT1--HIF1A	96	56	SPINT1	2012	chr15:41137227:+	HIF1A	28300	chr14:62213652:+	ONLY_REF_SPLICE	YES	35	1162	0.81	0.12	1.3831	0.8068	{Klijn_CCL:Ovary=1},SPINT1->Oncogene{Bushman},chr15:41136216-41150405:+,serine_peptidase_inhibitor,_Kunitz_type_1,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	SKOV3_OVARY	0.12	0.81	2.1899	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	LRRFIP1--MLPH	54	149	LRRFIP1	23191	chr2:238666191:+	MLPH	65798	chr2:238462209:+	ONLY_REF_SPLICE	YES	213	7	0.49	0.97	0.778	2.1467	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.49	0.97	2.9247	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FBXO42--PI4K2B	74	36	FBXO42	4719	chr1:16621278:-	PI4K2B	28044	chr4:25253943:+	ONLY_REF_SPLICE	YES	36	24	0.75	0.82	1.0661	0.5187	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,PI4K2B->chr4:25162263-25280714:+,phosphatidylinositol_4-kinase_type_2_beta	SKOV3_OVARY	0.75	0.82	1.5848	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SLC7A6--PLA2G15	69	27	SLC7A6	3192	chr16:68300624:+	PLA2G15	27944	chr16:68293049:+	ONLY_REF_SPLICE	YES	42	36	0.7	0.73	0.9941	0.389	LOCAL_REARRANGEMENT:+:[3472],SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,PLA2G15->chr16:68279207-68294961:+,phospholipase_A2_group_XV	SKOV3_OVARY	0.7	0.73	1.3831	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	B4GALT1--RP11-778H2.1	70	21	B4GALT1	5187	chr9:33120417:-	RP11-778H2.1	16306	chr12:24380095:+	ONLY_REF_SPLICE	YES	41	0	0.69	1	1.0085	0.3025	B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,RP11-778H2.1->chr12:24376205-24390899:+	SKOV3_OVARY	0.69	1	1.311	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	PPFIBP1--SMCO2	53	84	PPFIBP1	1935	chr12:27677298:+	SMCO2	48990	chr12:27647233:+	ONLY_REF_SPLICE	YES	46	0	0.75	1	0.7636	1.2102	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	SKOV3_OVARY	0.75	1	1.9738	TRUE	0	1	0	3	1	TRUE	ACH-000811
SKOV3_OVARY	FAM222B--MYO18A	55	67	FAM222B	4726	chr17:27139227:-	MYO18A	19798	chr17:27494039:-	ONLY_REF_SPLICE	YES	14	7	0.9	0.95	0.7924	0.9653	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	SKOV3_OVARY	0.9	0.95	1.7577	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FAM104A--CPSF4L	56	60	FAM104A	2491	chr17:71228225:-	CPSF4L	12924	chr17:71257122:-	ONLY_REF_SPLICE	YES	120	1	0.49	0.99	0.8068	0.8644	LOCAL_REARRANGEMENT:-:[11696],FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A,CPSF4L->chr17:71244588-71258491:-,cleavage_and_polyadenylation_specific_factor_4-like	SKOV3_OVARY	0.49	0.99	1.6712	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HIF1A--SYT16	56	38	HIF1A	1327	chr14:62162557:+	SYT16	26926	chr14:62541853:+	ONLY_REF_SPLICE	YES	1166	22	0.07	0.81	0.8068	0.5475	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,SYT16->chr14:62453803-62568431:+,synaptotagmin_16	SKOV3_OVARY	0.07	0.81	1.3543	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FAM222B--MYO18A	54	10	FAM222B	2441	chr17:27169700:-	MYO18A	19798	chr17:27494039:-	ONLY_REF_SPLICE	YES	0	7	1	0.9	0.778	0.1441	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	SKOV3_OVARY	0.9	1	0.9221	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SPINT1--HIF1A	32	70	SPINT1	2012	chr15:41137227:+	HIF1A	27173	chr14:62212409:+	ONLY_REF_SPLICE	YES	35	1317	0.74	0.07	0.461	1.0085	{Klijn_CCL:Ovary=1},SPINT1->Oncogene{Bushman},chr15:41136216-41150405:+,serine_peptidase_inhibitor,_Kunitz_type_1,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	SKOV3_OVARY	0.07	0.74	1.4695	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	MTCH1--RP5-1021I20.1	38	33	MTCH1	1446	chr6:36953629:-	RP5-1021I20.1	16709	chr14:74269588:+	ONLY_REF_SPLICE	YES	173	8	0.29	0.9	0.5475	0.4754	MTCH1->chr6:36935917-36954074:-,mitochondrial_carrier_1,RP5-1021I20.1->chr14:74254063-74269973:+	SKOV3_OVARY	0.29	0.9	1.0229	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	LRRFIP1--MLPH	3	137	LRRFIP1	23125	chr2:238666125:+	MLPH	65798	chr2:238462209:+	INCL_NON_REF_SPLICE	YES	214	7	0.4	0.95	0.0432	1.9738	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.4	0.95	2.017	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	LRRFIP1--MLPH	3	135	LRRFIP1	22098	chr2:238664830:+	MLPH	65329	chr2:238461740:+	ONLY_REF_SPLICE	YES	202	5	0.41	0.97	0.0432	1.945	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.41	0.97	1.9882	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	STRA13--NTN4	36	0	STRA13	2136	chr17:79980702:-	NTN4	14935	chr12:96104407:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5187	0	STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13,NTN4->chr12:96051583-96184930:-,netrin_4	SKOV3_OVARY	1	1	0.5187	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HIF1A--SYT16	24	47	HIF1A	1327	chr14:62162557:+	SYT16	25713	chr14:62536321:+	ONLY_REF_SPLICE	YES	1166	6	0.06	0.92	0.3458	0.6771	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,SYT16->chr14:62453803-62568431:+,synaptotagmin_16	SKOV3_OVARY	0.06	0.92	1.0229	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FAM104A--CPSF4L	26	36	FAM104A	2491	chr17:71228225:-	CPSF4L	13975	chr17:71253972:-	ONLY_REF_SPLICE	YES	120	1	0.34	0.98	0.3746	0.5187	LOCAL_REARRANGEMENT:-:[11696],FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A,CPSF4L->chr17:71244588-71258491:-,cleavage_and_polyadenylation_specific_factor_4-like	SKOV3_OVARY	0.34	0.98	0.8933	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	AGFG1--COL4A3	31	15	AGFG1	1437	chr2:228337304:+	COL4A3	47541	chr2:228134626:+	ONLY_REF_SPLICE	YES	31	5	0.6	0.9	0.4466	0.2161	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,COL4A3->Oncogene{Bushman},chr2:228029281-228179508:+,collagen_type_IV_alpha_3	SKOV3_OVARY	0.6	0.9	0.6627	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	B4GALT1--RP11-778H2.1	31	12	B4GALT1	2835	chr9:33135187:-	RP11-778H2.1	16306	chr12:24380095:+	ONLY_REF_SPLICE	YES	94	0	0.31	1	0.4466	0.1729	B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,RP11-778H2.1->chr12:24376205-24390899:+	SKOV3_OVARY	0.31	1	0.6195	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HIF1A--SYT16	14	68	HIF1A	1327	chr14:62162557:+	SYT16	24046	chr14:62462594:+	ONLY_REF_SPLICE	YES	1166	0	0.07	1	0.2017	0.9797	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,SYT16->chr14:62453803-62568431:+,synaptotagmin_16	SKOV3_OVARY	0.07	1	1.1814	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	NECAP2--ERC2	27	8	NECAP2	5381	chr1:16775696:+	ERC2	35782	chr3:55768946:-	ONLY_REF_SPLICE	YES	78	0	0.31	1	0.389	0.1153	NECAP2->NECAP_endocytosis_associated_2,chr1:16767167-16786573:+,ERC2->ELKS/RAB6-interacting/CAST_family_member_2,Oncogene{Bushman},chr3:55542336-56502391:-	SKOV3_OVARY	0.31	1	0.5043	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FAM222B--MYO18A	21	17	FAM222B	3499	chr17:27161311:-	MYO18A	19798	chr17:27494039:-	ONLY_REF_SPLICE	YES	8	7	0.83	0.84	0.3025	0.2449	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	SKOV3_OVARY	0.83	0.84	0.5474	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	GMEB2--KANSL1	19	21	GMEB2	12478	chr20:62219912:-	KANSL1	38321	chr17:44115944:-	INCL_NON_REF_SPLICE	YES	35	38	0.53	0.51	0.2737	0.3025	GMEB2->chr20:62218955-62258394:-,glucocorticoid_modulatory_element_binding_protein_2,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	SKOV3_OVARY	0.51	0.53	0.5762	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	PSKH1--CTCF	21	7	PSKH1	4241	chr16:67943609:+	CTCF	12296	chr16:67605051:+	ONLY_REF_SPLICE	YES	63	1	0.31	0.97	0.3025	0.1008	PSKH1->chr16:67927175-67963581:+,protein_serine_kinase_H1,CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+	SKOV3_OVARY	0.31	0.97	0.4033	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	LRRFIP1--MLPH	7	57	LRRFIP1	22098	chr2:238664830:+	MLPH	65921	chr2:238462332:+	ONLY_REF_SPLICE	YES	202	34	0.24	0.65	0.1008	0.8212	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.24	0.65	0.922	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FAM222B--MYO18A	3	70	FAM222B	4777	chr17:27139176:-	MYO18A	19798	chr17:27494039:-	ONLY_REF_SPLICE	YES	15	7	0.83	0.91	0.0432	1.0085	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	SKOV3_OVARY	0.83	0.91	1.0517	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	ZNF532--RP11-108P20.4	18	9	ZNF532	3980	chr18:56532811:+	RP11-108P20.4	29520	chr18:56481120:+	INCL_NON_REF_SPLICE	YES	22	0	0.55	1	0.2593	0.1297	LOCAL_REARRANGEMENT:+:[28236],ZNF532->chr18:56529832-56653712:+,zinc_finger_protein_532,RP11-108P20.4->chr18:56481112-56501596:+	SKOV3_OVARY	0.55	1	0.389	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	STRA13--NTN4	17	11	STRA13	2323	chr17:79980515:-	NTN4	14935	chr12:96104407:-	ONLY_REF_SPLICE	YES	3	202	0.9	0.12	0.2449	0.1585	STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13,NTN4->chr12:96051583-96184930:-,netrin_4	SKOV3_OVARY	0.12	0.9	0.4034	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	LRRFIP1--MLPH	3	62	LRRFIP1	23191	chr2:238666191:+	MLPH	65921	chr2:238462332:+	ONLY_REF_SPLICE	YES	213	34	0.23	0.66	0.0432	0.8932	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.23	0.66	0.9364	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	MTFMT--RASL12	18	1	MTFMT	4754	chr15:65313852:-	RASL12	16980	chr15:65357611:-	ONLY_REF_SPLICE	YES	49	6	0.28	0.76	0.2593	0.0144	LOCAL_REARRANGEMENT:-:[23702],MTFMT->chr15:65294845-65321977:-,mitochondrial_methionyl-tRNA_formyltransferase,RASL12->RAS_like_family_12,chr15:65345679-65369028:-	SKOV3_OVARY	0.28	0.76	0.2737	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	LRRFIP1--MLPH	1	65	LRRFIP1	21005	chr2:238662122:+	MLPH	65798	chr2:238462209:+	ONLY_REF_SPLICE	YES	161	7	0.29	0.9	0.0144	0.9365	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.29	0.9	0.9509	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SLC7A6--PLA2G15	8	30	SLC7A6	3192	chr16:68300624:+	PLA2G15	26719	chr16:68289669:+	ONLY_REF_SPLICE	YES	42	31	0.47	0.55	0.1153	0.4322	LOCAL_REARRANGEMENT:+:[3472],SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,PLA2G15->chr16:68279207-68294961:+,phospholipase_A2_group_XV	SKOV3_OVARY	0.47	0.55	0.5475	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HOOK2--ACTN3	11	9	HOOK2	13927	chr19:12878209:-	ACTN3	23196	chr11:66318710:+	ONLY_REF_SPLICE	YES	52	1	0.28	0.95	0.1585	0.1297	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,ACTN3->actinin_alpha_3_(gene/pseudogene),chr11:66313866-66330800:+	SKOV3_OVARY	0.28	0.95	0.2882	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	NECAP2--ERC2	11	8	NECAP2	5381	chr1:16775696:+	ERC2	35786	chr3:55768942:-	ONLY_REF_SPLICE	YES	78	0	0.2	1	0.1585	0.1153	NECAP2->NECAP_endocytosis_associated_2,chr1:16767167-16786573:+,ERC2->ELKS/RAB6-interacting/CAST_family_member_2,Oncogene{Bushman},chr3:55542336-56502391:-	SKOV3_OVARY	0.2	1	0.2738	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	GMEB2--KANSL1	9	14	GMEB2	11151	chr20:62221239:-	KANSL1	39880	chr17:44111648:-	INCL_NON_REF_SPLICE	YES	16	39	0.59	0.37	0.1297	0.2017	GMEB2->chr20:62218955-62258394:-,glucocorticoid_modulatory_element_binding_protein_2,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	SKOV3_OVARY	0.37	0.59	0.3314	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HOOK2--ACTN3	10	10	HOOK2	13927	chr19:12878209:-	ACTN3	23010	chr11:66318524:+	ONLY_REF_SPLICE	YES	52	0	0.28	1	0.1441	0.1441	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,ACTN3->actinin_alpha_3_(gene/pseudogene),chr11:66313866-66330800:+	SKOV3_OVARY	0.28	1	0.2882	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HIF1A-AS2--RP11-532F12.5	11	4	HIF1A-AS2	1213	chr14:62217603:-	RP11-532F12.5	8857	chr15:41130884:-	ONLY_REF_SPLICE	YES	2	21	0.88	0.42	0.1585	0.0576	HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,RP11-532F12.5->chr15:41128006-41136585:-	SKOV3_OVARY	0.42	0.88	0.2161	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SLC7A6--PLA2G15	4	28	SLC7A6	3192	chr16:68300624:+	PLA2G15	26844	chr16:68289794:+	ONLY_REF_SPLICE	YES	42	28	0.43	0.53	0.0576	0.4034	LOCAL_REARRANGEMENT:+:[3472],SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,PLA2G15->chr16:68279207-68294961:+,phospholipase_A2_group_XV	SKOV3_OVARY	0.43	0.53	0.461	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FBXO42--PI4K2B	3	31	FBXO42	4719	chr1:16621278:-	PI4K2B	28062	chr4:25253961:+	INCL_NON_REF_SPLICE	YES	36	26	0.49	0.57	0.0432	0.4466	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,PI4K2B->chr4:25162263-25280714:+,phosphatidylinositol_4-kinase_type_2_beta	SKOV3_OVARY	0.49	0.57	0.4898	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	GMEB2--KANSL1	8	9	GMEB2	10477	chr20:62221913:-	KANSL1	39877	chr17:44111651:-	INCL_NON_REF_SPLICE	YES	51	39	0.25	0.3	0.1153	0.1297	GMEB2->chr20:62218955-62258394:-,glucocorticoid_modulatory_element_binding_protein_2,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	SKOV3_OVARY	0.25	0.3	0.245	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	C20orf194--NBR1	8	5	C20orf194	24151	chr20:3277508:-	NBR1	58381	chr17:41346367:+	ONLY_REF_SPLICE	YES	7	103	0.65	0.11	0.1153	0.072	C20orf194->chr20:3229951-3388272:-,chromosome_20_open_reading_frame_194,NBR1->Oncogene{Bushman},chr17:41322498-41363708:+,neighbor_of_BRCA1_gene_1	SKOV3_OVARY	0.11	0.65	0.1873	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FBXL20--RFX2	9	0	FBXL20	1351	chr17:37558426:-	RFX2	32273	chr19:6078345:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1297	0	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	SKOV3_OVARY	1	1	0.1297	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	TCHP--RP1-7G5.6	9	0	TCHP	11858	chr12:110352432:+	RP1-7G5.6	28276	chr12:110325598:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1297	0	LOCAL_REARRANGEMENT:+:[11797],TCHP->chr12:110338069-110421646:+,trichoplein_keratin_filament_binding,RP1-7G5.6->chr12:110318481-110326272:+	SKOV3_OVARY	1	1	0.1297	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FAM104A--CPSF4L	8	3	FAM104A	2491	chr17:71228225:-	CPSF4L	16227	chr17:71248862:-	ONLY_REF_SPLICE	YES	120	0	0.08	1	0.1153	0.0432	LOCAL_REARRANGEMENT:-:[11696],FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A,CPSF4L->chr17:71244588-71258491:-,cleavage_and_polyadenylation_specific_factor_4-like	SKOV3_OVARY	0.08	1	0.1585	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	TBC1D22A--GRAMD4	6	10	TBC1D22A	10096	chr22:47193517:+	GRAMD4	45509	chr22:47073044:+	ONLY_REF_SPLICE	YES	26	37	0.38	0.3	0.0864	0.1441	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SKOV3_OVARY	0.3	0.38	0.2305	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	RP11-18I14.10--FAM213A	8	1	RP11-18I14.10	1514	chr10:104210087:+	FAM213A	13981	chr10:82180222:+	ONLY_REF_SPLICE	YES	12	58	0.43	0.13	0.1153	0.0144	RP11-18I14.10->chr10:104209574-104220863:+,FAM213A->chr10:82167585-82192753:+,family_with_sequence_similarity_213_member_A	SKOV3_OVARY	0.13	0.43	0.1297	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SLC7A6--PLA2G15	8	0	SLC7A6	1047	chr16:68298479:+	PLA2G15	27944	chr16:68293049:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1153	0	LOCAL_REARRANGEMENT:+:[3472],SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,PLA2G15->chr16:68279207-68294961:+,phospholipase_A2_group_XV	SKOV3_OVARY	1	1	0.1153	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	TBC1D22A--GRAMD4	5	12	TBC1D22A	10096	chr22:47193517:+	GRAMD4	44962	chr22:47072497:+	ONLY_REF_SPLICE	YES	26	49	0.4	0.26	0.072	0.1729	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SKOV3_OVARY	0.26	0.4	0.2449	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SPATS2--ADCY6	6	5	SPATS2	2004	chr12:49761370:+	ADCY6	32705	chr12:49177221:-	ONLY_REF_SPLICE	YES	34	12	0.24	0.48	0.0864	0.072	SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,ADCY6->adenylate_cyclase_6,chr12:49159975-49182820:-	SKOV3_OVARY	0.24	0.48	0.1584	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	RP11-18I14.10--FAM213A	6	3	RP11-18I14.10	6611	chr10:104215184:+	FAM213A	13981	chr10:82180222:+	ONLY_REF_SPLICE	YES	16	58	0.36	0.13	0.0864	0.0432	RP11-18I14.10->chr10:104209574-104220863:+,FAM213A->chr10:82167585-82192753:+,family_with_sequence_similarity_213_member_A	SKOV3_OVARY	0.13	0.36	0.1296	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	AGFG1--COL4A3	6	2	AGFG1	1437	chr2:228337304:+	COL4A3	49584	chr2:228137665:+	ONLY_REF_SPLICE	YES	31	32	0.21	0.2	0.0864	0.0288	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,COL4A3->Oncogene{Bushman},chr2:228029281-228179508:+,collagen_type_IV_alpha_3	SKOV3_OVARY	0.2	0.21	0.1152	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	UBE2G1--ZZEF1	1	22	UBE2G1	5880	chr17:4210316:-	ZZEF1	72825	chr17:3912248:-	ONLY_REF_SPLICE	NO	0	71	1	0.24	0.0144	0.317	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKOV3_OVARY	0.24	1	0.3314	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	RANBP10--PKP2	5	2	RANBP10	7667	chr16:67778191:-	PKP2	36844	chr12:32955490:-	ONLY_REF_SPLICE	YES	45	62	0.13	0.1	0.072	0.0288	RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-,PKP2->chr12:32943679-33049774:-,plakophilin_2	SKOV3_OVARY	0.1	0.13	0.1008	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	ZNF532--RP11-108P20.4	3	9	ZNF532	5178	chr18:56563854:+	RP11-108P20.4	29520	chr18:56481120:+	INCL_NON_REF_SPLICE	YES	27	0	0.31	1	0.0432	0.1297	LOCAL_REARRANGEMENT:+:[28236],ZNF532->chr18:56529832-56653712:+,zinc_finger_protein_532,RP11-108P20.4->chr18:56481112-56501596:+	SKOV3_OVARY	0.31	1	0.1729	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	UBE2G1--ZZEF1	1	16	UBE2G1	1358	chr17:4269566:-	ZZEF1	72022	chr17:3913051:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0144	0.2305	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKOV3_OVARY	0.94	1	0.2449	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	TBC1D22A--GRAMD4	1	12	TBC1D22A	10096	chr22:47193517:+	GRAMD4	43877	chr22:47071365:+	ONLY_REF_SPLICE	YES	26	30	0.33	0.3	0.0144	0.1729	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SKOV3_OVARY	0.3	0.33	0.1873	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SPATS2--ADCY6	2	7	SPATS2	3067	chr12:49765073:+	ADCY6	32705	chr12:49177221:-	ONLY_REF_SPLICE	YES	72	12	0.11	0.43	0.0288	0.1008	SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,ADCY6->adenylate_cyclase_6,chr12:49159975-49182820:-	SKOV3_OVARY	0.11	0.43	0.1296	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	GNG12-AS1--IL23R	3	2	GNG12-AS1	1134	chr1:68298119:+	IL23R	22776	chr1:67633775:+	ONLY_REF_SPLICE	NO	1	0	0.83	1	0.0432	0.0288	GNG12-AS1->GNG12_antisense_RNA_1,chr1:68297986-68668670:+,IL23R->chr1:67632083-67725662:+,interleukin_23_receptor	SKOV3_OVARY	0.83	1	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HOOK2--ACTN3	2	6	HOOK2	13506	chr19:12878630:-	ACTN3	23010	chr11:66318524:+	ONLY_REF_SPLICE	YES	36	0	0.18	1	0.0288	0.0864	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,ACTN3->actinin_alpha_3_(gene/pseudogene),chr11:66313866-66330800:+	SKOV3_OVARY	0.18	1	0.1152	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	TRAPPC10--CTD-2036P10.3	3	2	TRAPPC10	24473	chr21:45514114:+	CTD-2036P10.3	37027	chr15:43033651:+	ONLY_REF_SPLICE	YES	52	10	0.09	0.33	0.0432	0.0288	TRAPPC10->chr21:45432200-45526433:+,trafficking_protein_particle_complex_10,CTD-2036P10.3->chr15:43031316-43035400:+	SKOV3_OVARY	0.09	0.33	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	MTFMT--RASL12	3	1	MTFMT	4754	chr15:65313852:-	RASL12	18037	chr15:65351756:-	ONLY_REF_SPLICE	YES	49	8	0.08	0.33	0.0432	0.0144	LOCAL_REARRANGEMENT:-:[23702],MTFMT->chr15:65294845-65321977:-,mitochondrial_methionyl-tRNA_formyltransferase,RASL12->RAS_like_family_12,chr15:65345679-65369028:-	SKOV3_OVARY	0.08	0.33	0.0576	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SLC38A10--STRA13	3	1	SLC38A10	1689	chr17:79268659:-	STRA13	28611	chr17:79977785:-	INCL_NON_REF_SPLICE	YES	71	2	0.05	0.67	0.0432	0.0144	SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10,STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13	SKOV3_OVARY	0.05	0.67	0.0576	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FBXO42--PI4K2B	1	8	FBXO42	4719	chr1:16621278:-	PI4K2B	29199	chr4:25256687:+	ONLY_REF_SPLICE	YES	36	61	0.2	0.13	0.0144	0.1153	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,PI4K2B->chr4:25162263-25280714:+,phosphatidylinositol_4-kinase_type_2_beta	SKOV3_OVARY	0.13	0.2	0.1297	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	NECAP2--ERC2	1	8	NECAP2	6421	chr1:16776736:+	ERC2	35782	chr3:55768946:-	ONLY_REF_SPLICE	NO	87	0	0.09	1	0.0144	0.1153	NECAP2->NECAP_endocytosis_associated_2,chr1:16767167-16786573:+,ERC2->ELKS/RAB6-interacting/CAST_family_member_2,Oncogene{Bushman},chr3:55542336-56502391:-	SKOV3_OVARY	0.09	1	0.1297	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SYT16--PRKCH	3	0	SYT16	8073	chr14:62547992:+	PRKCH	27952	chr14:61857943:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	SYT16->chr14:62453803-62568431:+,synaptotagmin_16,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	SKOV3_OVARY	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	RP11-18I14.10--FAM213A	2	3	RP11-18I14.10	6611	chr10:104215184:+	FAM213A	13998	chr10:82180239:+	ONLY_REF_SPLICE	YES	16	81	0.24	0.06	0.0288	0.0432	RP11-18I14.10->chr10:104209574-104220863:+,FAM213A->chr10:82167585-82192753:+,family_with_sequence_similarity_213_member_A	SKOV3_OVARY	0.06	0.24	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SPATS2--ADCY6	1	7	SPATS2	4151	chr12:49780920:+	ADCY6	32705	chr12:49177221:-	ONLY_REF_SPLICE	YES	73	12	0.1	0.4	0.0144	0.1008	SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,ADCY6->adenylate_cyclase_6,chr12:49159975-49182820:-	SKOV3_OVARY	0.1	0.4	0.1152	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	B4GALT1--RP11-778H2.1	2	2	B4GALT1	1599	chr9:33166756:-	RP11-778H2.1	16306	chr12:24380095:+	ONLY_REF_SPLICE	YES	102	0	0.04	1	0.0288	0.0288	B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,RP11-778H2.1->chr12:24376205-24390899:+	SKOV3_OVARY	0.04	1	0.0576	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HOOK2--ACTN3	1	5	HOOK2	13506	chr19:12878630:-	ACTN3	23196	chr11:66318710:+	ONLY_REF_SPLICE	YES	36	1	0.14	0.86	0.0144	0.072	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,ACTN3->actinin_alpha_3_(gene/pseudogene),chr11:66313866-66330800:+	SKOV3_OVARY	0.14	0.86	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	C20orf194--NBR1	1	4	C20orf194	24151	chr20:3277508:-	NBR1	58995	chr17:41346981:+	ONLY_REF_SPLICE	YES	7	104	0.42	0.05	0.0144	0.0576	C20orf194->chr20:3229951-3388272:-,chromosome_20_open_reading_frame_194,NBR1->Oncogene{Bushman},chr17:41322498-41363708:+,neighbor_of_BRCA1_gene_1	SKOV3_OVARY	0.05	0.42	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	ERBB2IP--NLN	2	0	ERBB2IP	1332	chr5:65222634:+	NLN	52043	chr5:65105342:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:+:[54750],ERBB2IP->chr5:65222303-65378377:+,NLN->chr5:65018023-65167553:+,neurolysin	SKOV3_OVARY	1	1	0.0288	TRUE	0	1	0	1	1	TRUE	ACH-000811
SKOV3_OVARY	RANBP10--PKP2	2	0	RANBP10	3278	chr16:67805937:-	PKP2	36844	chr12:32955490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-,PKP2->chr12:32943679-33049774:-,plakophilin_2	SKOV3_OVARY	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	STON2--RP11-299L17.3	1	3	STON2	1145	chr14:81902665:-	RP11-299L17.3	23146	chr14:81908786:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0144	0.0432	LOCAL_REARRANGEMENT:-:[5522],STON2->chr14:81727000-81902809:-,stonin_2,RP11-299L17.3->chr14:81908331-81916501:-	SKOV3_OVARY	0.31	1	0.0576	TRUE	0	0	0	2	0	TRUE	ACH-000811
SKOV3_OVARY	HIF1A-AS2--RP11-532F12.5	1	2	HIF1A-AS2	1213	chr14:62217603:-	RP11-532F12.5	10511	chr15:41128480:-	ONLY_REF_SPLICE	NO	2	10	0.6	0.23	0.0144	0.0288	HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,RP11-532F12.5->chr15:41128006-41136585:-	SKOV3_OVARY	0.23	0.6	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	TRAPPC10--CTD-2036P10.3	1	2	TRAPPC10	24473	chr21:45514114:+	CTD-2036P10.3	35204	chr15:43031316:+	ONLY_REF_SPLICE	YES	52	0	0.05	1	0.0144	0.0288	TRAPPC10->chr21:45432200-45526433:+,trafficking_protein_particle_complex_10,CTD-2036P10.3->chr15:43031316-43035400:+	SKOV3_OVARY	0.05	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HOOK2--ACTN3	1	1	HOOK2	13309	chr19:12878827:-	ACTN3	23010	chr11:66318524:+	ONLY_REF_SPLICE	NO	32	0	0.06	1	0.0144	0.0144	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,ACTN3->actinin_alpha_3_(gene/pseudogene),chr11:66313866-66330800:+	SKOV3_OVARY	0.06	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000811
NCIH1339_LUNG	ATP2C1--ALG1L2	116	36	ATP2C1	5569	chr3:130613619:+	ALG1L2	42429	chr3:129810104:+	ONLY_REF_SPLICE	YES	209	0	0.42	1	1.4089	0.4373	ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+,ALG1L2->ALG1,_chitobiosyldiphosphodolichol_beta-mannosyltransferase-like_2,chr3:129800674-129832070:+	NCIH1339_LUNG	0.42	1	1.8462	TRUE	0	0	0	2	0	TRUE	ACH-000921
NCIH1339_LUNG	PRRC2B--NUP214	106	32	PRRC2B	14428	chr9:134343140:+	NUP214	77608	chr9:134090599:+	ONLY_REF_SPLICE	YES	96	49	0.59	0.74	1.2875	0.3887	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	NCIH1339_LUNG	0.59	0.74	1.6762	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	SMARCC1--MAP4	79	57	SMARCC1	2624	chr3:47814307:-	MAP4	69629	chr3:47899002:-	ONLY_REF_SPLICE	YES	179	406	0.43	0.25	0.9595	0.6923	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[68586],SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	NCIH1339_LUNG	0.25	0.43	1.6518	TRUE	0	3	0	1	3	TRUE	ACH-000921
NCIH1339_LUNG	SMARCC1--MAP4	59	79	SMARCC1	2624	chr3:47814307:-	MAP4	68536	chr3:47908828:-	ONLY_REF_SPLICE	YES	179	329	0.44	0.3	0.7166	0.9595	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[68586],SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	NCIH1339_LUNG	0.3	0.44	1.6761	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	TNIP1--ANXA6	51	6	TNIP1	2716	chr5:150466646:-	ANXA6	49279	chr5:150502572:-	ONLY_REF_SPLICE	YES	58	212	0.5	0.21	0.6194	0.0729	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[7135],TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-,ANXA6->annexin_A6,chr5:150480273-150537443:-	NCIH1339_LUNG	0.21	0.5	0.6923	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	KIAA0319L--RP4-728D4.2	43	32	KIAA0319L	6988	chr1:35972213:-	RP4-728D4.2	35257	chr1:36040299:-	ONLY_REF_SPLICE	YES	65	0	0.54	1	0.5223	0.3887	LOCAL_REARRANGEMENT:-:[11863],KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,RP4-728D4.2->chr1:36035414-36043330:-	NCIH1339_LUNG	0.54	1	0.911	TRUE	0	1	0	1	1	TRUE	ACH-000921
NCIH1339_LUNG	CTCF--SLC9A5	29	12	CTCF	2435	chr16:67605167:+	SLC9A5	33197	chr16:67304641:+	ONLY_REF_SPLICE	YES	176	118	0.19	0.26	0.3522	0.1458	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,SLC9A5->chr16:67271586-67306093:+,solute_carrier_family_9_member_A5	NCIH1339_LUNG	0.19	0.26	0.498	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	QKI--PACRG	23	24	QKI	9463	chr6:163899928:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	221	2	0.18	0.96	0.2794	0.2915	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH1339_LUNG	0.18	0.96	0.5709	TRUE	0	1	0	3	1	TRUE	ACH-000921
NCIH1339_LUNG	LARS2--TGM4	17	3	LARS2	5051	chr3:45441865:+	TGM4	48035	chr3:44955076:+	ONLY_REF_SPLICE	YES	140	0	0.12	1	0.2065	0.0364	LARS2->chr3:45429998-45590913:+,leucyl-tRNA_synthetase_2,_mitochondrial,TGM4->chr3:44916100-44956482:+,transglutaminase_4	NCIH1339_LUNG	0.12	1	0.2429	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	QKI--PACRG	9	31	QKI	9463	chr6:163899928:+	PACRG	43367	chr6:163733811:+	ONLY_REF_SPLICE	YES	221	0	0.15	1	0.1093	0.3765	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH1339_LUNG	0.15	1	0.4858	TRUE	0	1	0	2	1	TRUE	ACH-000921
NCIH1339_LUNG	PHRF1--RASSF7	15	6	PHRF1	9811	chr11:601701:+	RASSF7	22274	chr11:561762:+	ONLY_REF_SPLICE	YES	127	6	0.14	0.78	0.1822	0.0729	LOCAL_REARRANGEMENT:+:[12465],PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,RASSF7->Ras_association_domain_family_member_7,chr11:560404-564021:+	NCIH1339_LUNG	0.14	0.78	0.2551	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	ATP2C1--ALG1L2	9	15	ATP2C1	5131	chr3:130613181:+	ALG1L2	42429	chr3:129810104:+	ONLY_REF_SPLICE	YES	125	0	0.16	1	0.1093	0.1822	ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+,ALG1L2->ALG1,_chitobiosyldiphosphodolichol_beta-mannosyltransferase-like_2,chr3:129800674-129832070:+	NCIH1339_LUNG	0.16	1	0.2915	TRUE	0	0	0	2	0	TRUE	ACH-000921
NCIH1339_LUNG	KIAA0319L--RP4-728D4.2	3	33	KIAA0319L	6988	chr1:35972213:-	RP4-728D4.2	33845	chr1:36043334:-	INCL_NON_REF_SPLICE	YES	65	0	0.36	1	0.0364	0.4008	LOCAL_REARRANGEMENT:-:[11863],KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,RP4-728D4.2->chr1:36035414-36043330:-	NCIH1339_LUNG	0.36	1	0.4372	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	KIAA0319L--RP4-728D4.2	3	33	KIAA0319L	6988	chr1:35972213:-	RP4-728D4.2	34086	chr1:36043093:-	INCL_NON_REF_SPLICE	YES	65	0	0.36	1	0.0364	0.4008	LOCAL_REARRANGEMENT:-:[11863],KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,RP4-728D4.2->chr1:36035414-36043330:-	NCIH1339_LUNG	0.36	1	0.4372	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	CTCF--PLEKHG4	9	8	CTCF	2435	chr16:67605167:+	PLEKHG4	18838	chr16:67312644:+	ONLY_REF_SPLICE	YES	176	15	0.09	0.53	0.1093	0.0972	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,PLEKHG4->chr16:67311413-67323402:+,pleckstrin_homology_and_RhoGEF_domain_containing_G4	NCIH1339_LUNG	0.09	0.53	0.2065	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	PIGG--Z95704.2	7	15	PIGG	2402	chr4:494390:+	Z95704.2	28436	chr4:85622:+	INCL_NON_REF_SPLICE	YES	124	0	0.15	1	0.085	0.1822	PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,Z95704.2->chr4:85621-87340:+	NCIH1339_LUNG	0.15	1	0.2672	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	FRAS1--NRP1	9	2	FRAS1	36634	chr4:79308855:+	NRP1	98354	chr10:33552801:-	ONLY_REF_SPLICE	YES	0	32	1	0.26	0.1093	0.0243	FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+,NRP1->chr10:33466420-33625190:-,neuropilin_1	NCIH1339_LUNG	0.26	1	0.1336	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	NCOA7--TPD52L1	8	5	NCOA7	7019	chr6:126136550:+	TPD52L1	46070	chr6:125583980:+	ONLY_REF_SPLICE	YES	27	61	0.33	0.18	0.0972	0.0607	NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7,TPD52L1->chr6:125440195-125585553:+,tumor_protein_D52-like_1	NCIH1339_LUNG	0.18	0.33	0.1579	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	PIGG--Z95704.2	5	16	PIGG	2971	chr4:494959:+	Z95704.2	28436	chr4:85622:+	INCL_NON_REF_SPLICE	YES	128	0	0.14	1	0.0607	0.1943	PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,Z95704.2->chr4:85621-87340:+	NCIH1339_LUNG	0.14	1	0.255	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	QKI--PACRG	1	31	QKI	9463	chr6:163899928:+	PACRG	40952	chr6:163600248:+	ONLY_REF_SPLICE	YES	221	0	0.13	1	0.0121	0.3765	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH1339_LUNG	0.13	1	0.3886	TRUE	0	1	0	1	1	TRUE	ACH-000921
NCIH1339_LUNG	SMARCC1--MAP4	2	27	SMARCC1	1504	chr3:47823093:-	MAP4	68536	chr3:47908828:-	ONLY_REF_SPLICE	YES	186	329	0.13	0.08	0.0243	0.3279	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[68586],SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	NCIH1339_LUNG	0.08	0.13	0.3522	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	USP32--RP11-264B14.1	8	1	USP32	9774	chr17:58365884:-	RP11-264B14.1	47126	chr17:59113745:-	ONLY_REF_SPLICE	YES	70	0	0.11	1	0.0972	0.0121	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,RP11-264B14.1->chr17:59111997-59147483:-	NCIH1339_LUNG	0.11	1	0.1093	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	SEPT9--ASPH	8	0	SEPT9	8751	chr17:75316430:+	ASPH	50543	chr8:62596747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0972	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	NCIH1339_LUNG	1	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	POU6F2--LRP1B	5	1	POU6F2	8027	chr7:39125631:+	LRP1B	52874	chr2:141747226:-	ONLY_REF_SPLICE	YES	9	2	0.4	0.75	0.0607	0.0121	POU6F2->Oncogene{Bushman},POU_class_6_homeobox_2,chr7:39017598-39532694:+,LRP1B->ArcherDX_panel,FoundationOne_panel,LDL_receptor_related_protein_1B,chr2:140988992-142889270:-	NCIH1339_LUNG	0.4	0.75	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	ATP2C1--ALG1L2	4	1	ATP2C1	1334	chr3:130569772:+	ALG1L2	42429	chr3:129810104:+	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0486	0.0121	ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+,ALG1L2->ALG1,_chitobiosyldiphosphodolichol_beta-mannosyltransferase-like_2,chr3:129800674-129832070:+	NCIH1339_LUNG	0.36	1	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	HIST2H2BB--CTD-2175A23.1	3	4	HIST2H2BB	1424	chr1:149398803:-	CTD-2175A23.1	8978	chr5:52244737:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0.0486	HIST2H2BB->chr1:149369722-149399226:-,histone_cluster_2,_H2bb_(pseudogene),CTD-2175A23.1->chr5:52228249-52286108:-	NCIH1339_LUNG	1	1	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	SOD2--UBE4B	3	0	SOD2	9723	chr6:160113693:-	UBE4B	35405	chr1:10155519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	SOD2->chr6:160090089-160183561:-,superoxide_dismutase_2,_mitochondrial,UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B	NCIH1339_LUNG	1	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	QKI--PACRG	1	6	QKI	2336	chr6:163836367:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	143	2	0.05	0.78	0.0121	0.0729	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH1339_LUNG	0.05	0.78	0.085	TRUE	0	0	0	2	0	TRUE	ACH-000921
NCIH1339_LUNG	NCOA7--TPD52L1	1	5	NCOA7	7019	chr6:126136550:+	TPD52L1	42116	chr6:125578244:+	ONLY_REF_SPLICE	YES	27	60	0.18	0.09	0.0121	0.0607	NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7,TPD52L1->chr6:125440195-125585553:+,tumor_protein_D52-like_1	NCIH1339_LUNG	0.09	0.18	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	USP32--RP11-264B14.1	2	1	USP32	9774	chr17:58365884:-	RP11-264B14.1	48298	chr17:59112135:-	ONLY_REF_SPLICE	YES	70	0	0.04	1	0.0243	0.0121	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,RP11-264B14.1->chr17:59111997-59147483:-	NCIH1339_LUNG	0.04	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	AP001065.2--UBE2G2	2	0	AP001065.2	2229	chr21:45843259:-	UBE2G2	14786	chr21:46197332:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	AP001065.2->chr21:45834473-45845155:-,UBE2G2->chr21:46188955-46221934:-,ubiquitin_conjugating_enzyme_E2_G2	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	ATL3--AP003774.1	2	0	ATL3	11532	chr11:63400498:-	AP003774.1	23621	chr11:64095008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ATL3->atlastin_GTPase_3,chr11:63391559-63439393:-,AP003774.1->chr11:64092522-64096976:-	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	ENOX2--RP1-23K20.2	2	0	ENOX2	3378	chrX:129917521:-	RP1-23K20.2	26484	chrX:130115830:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_REARRANGEMENT:-:[78356],ENOX2->chrX:129757350-130037208:-,ecto-NOX_disulfide-thiol_exchanger_2,RP1-23K20.2->chrX:130115564-130192120:-	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	LRRCC1--RALYL	1	4	LRRCC1	18529	chr8:86053752:+	RALYL	32219	chr8:85762215:+	ONLY_REF_SPLICE	YES	74	0	0.06	1	0.0121	0.0486	LRRCC1->chr8:86019382-86058311:+,leucine_rich_repeat_and_coiled-coil_centrosomal_protein_1,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	NCIH1339_LUNG	0.06	1	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	PBX3--MAPKAP1	2	0	PBX3	2279	chr9:128510902:+	MAPKAP1	39526	chr9:128246862:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	2	0	TRUE	ACH-000921
NCIH1339_LUNG	PLA2G4C--LIG1	2	0	PLA2G4C	5509	chr19:48607845:-	LIG1	32464	chr19:48668880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_REARRANGEMENT:-:[4628],PLA2G4C->chr19:48551100-48614074:-,phospholipase_A2_group_IVC,LIG1->DNA_ligase_1,chr19:48618702-48673860:-	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	RCC1--AIM1	2	0	RCC1	2916	chr1:28835413:+	AIM1	35631	chr6:107003643:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,AIM1->absent_in_melanoma_1,chr6:106959730-107018326:+	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	SEPT9--ASPH	2	0	SEPT9	6917	chr17:75303279:+	ASPH	50543	chr8:62596747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	TCF12--SLTM	2	0	TCF12	3439	chr15:57213296:+	SLTM	46731	chr15:59209198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	TTC28-AS1--CTBP1	2	0	TTC28-AS1	5841	chr22:28331218:+	CTBP1	28044	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	TTC28-AS1->TTC28_antisense_RNA_1,chr22:28315364-28404569:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	C1orf132--PLXNA2	1	2	C1orf132	2221	chr1:208041271:-	PLXNA2	31350	chr1:208315808:-	ONLY_REF_SPLICE	YES	2	7	0.6	0.3	0.0121	0.0243	C1orf132->chr1:207974863-208042495:-,chromosome_1_open_reading_frame_132,PLXNA2->chr1:208195587-208417665:-,plexin_A2	NCIH1339_LUNG	0.3	0.6	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	GPATCH2L--RP11-1152H15.1	1	2	GPATCH2L	16680	chr14:76662315:+	RP11-1152H15.1	42521	chr14:88230154:-	ONLY_REF_SPLICE	NO	65	0	0.04	1	0.0121	0.0243	GPATCH2L->G-patch_domain_containing_2_like,chr14:76618259-76720685:+,RP11-1152H15.1->chr14:88176763-88338635:-	NCIH1339_LUNG	0.04	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	RBPJ--RP11-302F12.3	1	1	RBPJ	9966	chr4:26364250:+	RP11-302F12.3	31784	chr4:25610333:+	ONLY_REF_SPLICE	YES	48	0	0.04	1	0.0121	0.0121	RBPJ->chr4:26165077-26436541:+,recombination_signal_binding_protein_for_immunoglobulin_kappa_J_region,RP11-302F12.3->chr4:25610333-25621087:+	NCIH1339_LUNG	0.04	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000921
TE15_OESOPHAGUS	TRMT10C--SMC6	640	222	TRMT10C	1142	chr3:101280847:+	SMC6	41595	chr2:17851842:-	ONLY_REF_SPLICE	YES	105	37	0.89	0.96	7.6175	2.6423	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,SMC6->chr2:17845079-17981509:-,structural_maintenance_of_chromosomes_6	TE15_OESOPHAGUS	0.89	0.96	10.2598	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	TUFT1--PBXIP1	472	141	TUFT1	1122	chr1:151512902:+	PBXIP1	19032	chr1:154926233:-	ONLY_REF_SPLICE	YES	15	0	0.98	1	5.6179	1.6782	TUFT1->chr1:151512781-151556059:+,tuftelin_1,PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1	TE15_OESOPHAGUS	0.98	1	7.2961	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	TUFT1--PBXIP1	36	94	TUFT1	1122	chr1:151512902:+	PBXIP1	20119	chr1:154924397:-	ONLY_REF_SPLICE	YES	15	21	0.9	0.86	0.4285	1.1188	TUFT1->chr1:151512781-151556059:+,tuftelin_1,PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1	TE15_OESOPHAGUS	0.86	0.9	1.5473	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	TRMT10C--SMC6	1	222	TRMT10C	1248	chr3:101280953:+	SMC6	41595	chr2:17851842:-	ONLY_REF_SPLICE	YES	127	37	0.64	0.86	0.0119	2.6423	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,SMC6->chr2:17845079-17981509:-,structural_maintenance_of_chromosomes_6	TE15_OESOPHAGUS	0.64	0.86	2.6542	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	FLNB--SLC11A2	49	29	FLNB	1457	chr3:57994583:+	SLC11A2	61407	chr12:51404549:-	ONLY_REF_SPLICE	YES	107	7	0.42	0.92	0.5832	0.3452	FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLC11A2->chr12:51373184-51422349:-,solute_carrier_family_11_member_2	TE15_OESOPHAGUS	0.42	0.92	0.9284	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	TRMT10C--SMC6	7	193	TRMT10C	1142	chr3:101280847:+	SMC6	41601	chr2:17851836:-	INCL_NON_REF_SPLICE	YES	105	37	0.66	0.84	0.0833	2.2972	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,SMC6->chr2:17845079-17981509:-,structural_maintenance_of_chromosomes_6	TE15_OESOPHAGUS	0.66	0.84	2.3805	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	ATXN7--DAZAP2	39	14	ATXN7	12346	chr3:63968697:+	DAZAP2	28820	chr12:51634127:+	ONLY_REF_SPLICE	YES	17	55	0.76	0.49	0.4642	0.1666	ATXN7->ataxin_7,chr3:63850233-63989138:+,DAZAP2->DAZ_associated_protein_2,chr12:51632076-51665146:+	TE15_OESOPHAGUS	0.49	0.76	0.6308	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	LARGE--MOB1B	18	10	LARGE	8508	chr22:34157358:-	MOB1B	43276	chr4:71835648:+	ONLY_REF_SPLICE	YES	20	14	0.58	0.67	0.2142	0.119	LARGE->chr22:33558212-34318829:-,like-glycosyltransferase,MOB1B->MOB_kinase_activator_1B,chr4:71768043-71888166:+	TE15_OESOPHAGUS	0.58	0.67	0.3332	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	TUFT1--PBXIP1	4	50	TUFT1	1122	chr1:151512902:+	PBXIP1	20505	chr1:154924011:-	ONLY_REF_SPLICE	YES	15	64	0.78	0.46	0.0476	0.5951	TUFT1->chr1:151512781-151556059:+,tuftelin_1,PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1	TE15_OESOPHAGUS	0.46	0.78	0.6427	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	TUFT1--PBXIP1	10	15	TUFT1	1122	chr1:151512902:+	PBXIP1	21847	chr1:154920842:-	ONLY_REF_SPLICE	YES	15	120	0.62	0.17	0.119	0.1785	TUFT1->chr1:151512781-151556059:+,tuftelin_1,PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1	TE15_OESOPHAGUS	0.17	0.62	0.2975	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	TUFT1--PBXIP1	5	31	TUFT1	1122	chr1:151512902:+	PBXIP1	20643	chr1:154923873:-	ONLY_REF_SPLICE	YES	15	95	0.71	0.27	0.0595	0.369	TUFT1->chr1:151512781-151556059:+,tuftelin_1,PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1	TE15_OESOPHAGUS	0.27	0.71	0.4285	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	CTA-714B7.5--ANO1	6	5	CTA-714B7.5	4248	chr22:35567428:-	ANO1	21815	chr11:69978025:+	ONLY_REF_SPLICE	YES	0	98	1	0.1	0.0714	0.0595	CTA-714B7.5->chr22:35515817-35627049:-,ANO1->anoctamin_1,chr11:69924408-70035634:+	TE15_OESOPHAGUS	0.1	1	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	GPR116--TNFRSF21	6	5	GPR116	25032	chr6:46823711:-	TNFRSF21	38435	chr6:47200730:-	ONLY_REF_SPLICE	YES	0	246	1	0.04	0.0714	0.0595	GPR116->chr6:46820249-46922680:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	TE15_OESOPHAGUS	0.04	1	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	ALOX15--UBE2G1	6	4	ALOX15	8396	chr17:4536156:-	UBE2G1	18133	chr17:4210418:-	ONLY_REF_SPLICE	YES	5	50	0.67	0.17	0.0714	0.0476	ALOX15->Oncogene{Bushman},arachidonate_15-lipoxygenase,chr17:4534197-4545589:-,UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1	TE15_OESOPHAGUS	0.17	0.67	0.119	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	ARHGAP24--RP11-1145L24.1	5	1	ARHGAP24	19993	chr4:86898844:+	RP11-1145L24.1	29507	chr8:73787438:-	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0595	0.0119	ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,RP11-1145L24.1->chr8:73787094-73793975:-	TE15_OESOPHAGUS	0.67	1	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	ATXN7--THOC7	3	1	ATXN7	3640	chr3:63884173:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	YES	0	13	1	0.24	0.0357	0.0119	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	TE15_OESOPHAGUS	0.24	1	0.0476	TRUE	0	2	0	5	2	TRUE	ACH-000353
TE15_OESOPHAGUS	MTAP--DMRTA1	3	1	MTAP	7556	chr9:21818201:+	DMRTA1	25056	chr9:22451063:+	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0357	0.0119	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	TE15_OESOPHAGUS	0.67	1	0.0476	TRUE	0	1	0	2	0	TRUE	ACH-000353
TE15_OESOPHAGUS	AGTPBP1--PRRC2B	2	0	AGTPBP1	8702	chr9:88284400:-	PRRC2B	34945	chr9:134305477:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	AGTPBP1->ATP/GTP_binding_protein_1,chr9:88161455-88356944:-,PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B	TE15_OESOPHAGUS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	ATXN7--DAZAP2	2	0	ATXN7	12346	chr3:63968697:+	DAZAP2	34855	chr12:51664502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	ATXN7->ataxin_7,chr3:63850233-63989138:+,DAZAP2->DAZ_associated_protein_2,chr12:51632076-51665146:+	TE15_OESOPHAGUS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	C12orf60--ATF7IP	2	0	C12orf60	1180	chr12:14956685:+	ATF7IP	35097	chr12:14619460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	C12orf60->chr12:14956506-15059520:+,chromosome_12_open_reading_frame_60,ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+	TE15_OESOPHAGUS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	C17orf62--FOXK2	2	0	C17orf62	1130	chr17:80408576:-	FOXK2	28519	chr17:80559179:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	LOCAL_INVERSION:-:+:[68884],C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	TE15_OESOPHAGUS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	TUFT1--PBXIP1	1	3	TUFT1	1122	chr1:151512902:+	PBXIP1	22501	chr1:154920188:-	ONLY_REF_SPLICE	NO	15	94	0.21	0.04	0.0119	0.0357	TUFT1->chr1:151512781-151556059:+,tuftelin_1,PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1	TE15_OESOPHAGUS	0.04	0.21	0.0476	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	LARGE--MOB1B	1	2	LARGE	2799	chr22:34315983:-	MOB1B	43276	chr4:71835648:+	ONLY_REF_SPLICE	YES	19	14	0.14	0.18	0.0119	0.0238	LARGE->chr22:33558212-34318829:-,like-glycosyltransferase,MOB1B->MOB_kinase_activator_1B,chr4:71768043-71888166:+	TE15_OESOPHAGUS	0.14	0.18	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	C14orf37--ARID4A	1	1	C14orf37	2258	chr14:58758353:-	ARID4A	28688	chr14:58785260:+	ONLY_REF_SPLICE	NO	0	14	1	0.12	0.0119	0.0119	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_INVERSION:-:+:[246],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,ARID4A->AT-rich_interaction_domain_4A,Oncogene{Bushman},chr14:58765103-58840605:+	TE15_OESOPHAGUS	0.12	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000353
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JKAMP--TRAV35	204	68	JKAMP	4386	chr14:59954546:+	TRAV35	14096	chr14:22690088:+	ONLY_REF_SPLICE	YES	60	0	0.82	1	2.2393	0.7464	JKAMP->JNK1/MAPK8-associated_membrane_protein,chr14:59951161-59972128:+,TRAV35->T_cell_receptor_alpha_variable_35,chr14:22689792-22690371:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	2.9857	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2G1--ZZEF1	112	41	UBE2G1	5880	chr17:4210316:-	ZZEF1	52131	chr17:3957489:-	ONLY_REF_SPLICE	YES	0	4	1	0.97	1.2294	0.4501	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.6795	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A2--PTMA	91	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9989	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9989	TRUE	0	0	0	10	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3A1--CTA-85E5.10	68	34	SF3A1	3954	chr22:30742301:-	CTA-85E5.10	23716	chr22:30436267:-	ONLY_REF_SPLICE	YES	88	0	0.54	1	0.7464	0.3732	SF3A1->chr22:30727977-30752936:-,splicing_factor_3a_subunit_1,CTA-85E5.10->chr22:30404731-30476469:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	1.1196	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2G1--ZZEF1	49	21	UBE2G1	5880	chr17:4210316:-	ZZEF1	53270	chr17:3955430:-	ONLY_REF_SPLICE	YES	0	27	1	0.72	0.5379	0.2305	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	1	0.7684	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A2--KCNV1	50	14	SLC38A2	8190	chr12:46756804:-	KCNV1	20473	chr8:110980828:-	ONLY_REF_SPLICE	YES	590	0	0.1	1	0.5488	0.1537	{Klijn_CCL:Lymphoid=1},SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,KCNV1->chr8:110975874-110988076:-,potassium_voltage-gated_channel_modifier_subfamily_V_member_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.7025	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2G1--ZZEF1	39	50	UBE2G1	5880	chr17:4210316:-	ZZEF1	51001	chr17:3959639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4281	0.5488	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9769	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF2S1--CTD-2314B22.2	37	5	EIF2S1	3739	chr14:67831725:+	CTD-2314B22.2	17215	chr14:19850949:-	INCL_NON_REF_SPLICE	YES	118	0	0.26	1	0.4061	0.0549	EIF2S1->chr14:67826714-67853233:+,eukaryotic_translation_initiation_factor_2_subunit_alpha,CTD-2314B22.2->chr14:19832617-19857070:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.461	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3A1--CTA-85E5.10	19	25	SF3A1	3954	chr22:30742301:-	CTA-85E5.10	24818	chr22:30414718:-	ONLY_REF_SPLICE	YES	88	2	0.33	0.96	0.2086	0.2744	SF3A1->chr22:30727977-30752936:-,splicing_factor_3a_subunit_1,CTA-85E5.10->chr22:30404731-30476469:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.96	0.483	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EMC1--AKR7A3	16	9	EMC1	18024	chr1:19549118:-	AKR7A3	29740	chr1:19612866:-	ONLY_REF_SPLICE	YES	161	5	0.13	0.83	0.1756	0.0988	LOCAL_REARRANGEMENT:-:[31006],EMC1->ER_membrane_protein_complex_subunit_1,chr1:19542158-19578046:-,AKR7A3->aldo-keto_reductase_family_7,_member_A3_(aflatoxin_aldehyde_reductase),chr1:19609052-19615744:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.83	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3A1--CTA-85E5.10	1	37	SF3A1	3954	chr22:30742301:-	CTA-85E5.10	22429	chr22:30443900:-	ONLY_REF_SPLICE	YES	88	0	0.3	1	0.011	0.4061	SF3A1->chr22:30727977-30752936:-,splicing_factor_3a_subunit_1,CTA-85E5.10->chr22:30404731-30476469:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.4171	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF2S1--CTD-2314B22.2	8	5	EIF2S1	3739	chr14:67831725:+	CTD-2314B22.2	17156	chr14:19851008:-	INCL_NON_REF_SPLICE	YES	118	0	0.1	1	0.0878	0.0549	EIF2S1->chr14:67826714-67853233:+,eukaryotic_translation_initiation_factor_2_subunit_alpha,CTD-2314B22.2->chr14:19832617-19857070:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.1427	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2G1--ZZEF1	5	11	UBE2G1	1358	chr17:4269566:-	ZZEF1	52131	chr17:3957489:-	ONLY_REF_SPLICE	YES	1	4	0.94	0.8	0.0549	0.1207	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.94	0.1756	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGDIA--MTATP6P1	5	0	ARHGDIA	3745	chr17:79826538:-	MTATP6P1	7952	chr1:569341:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LANCL1--AGAP1	4	4	LANCL1	10415	chr2:211300940:-	AGAP1	23814	chr2:236617823:+	ONLY_REF_SPLICE	YES	25	2	0.24	0.8	0.0439	0.0439	LANCL1->LanC_like_1,chr2:211295973-211342376:-,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.8	0.0878	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3A1--CTA-85E5.10	2	11	SF3A1	3954	chr22:30742301:-	CTA-85E5.10	25931	chr22:30405185:-	ONLY_REF_SPLICE	YES	88	14	0.13	0.48	0.022	0.1207	SF3A1->chr22:30727977-30752936:-,splicing_factor_3a_subunit_1,CTA-85E5.10->chr22:30404731-30476469:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.48	0.1427	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGDIA--MTATP6P1	4	0	ARHGDIA	3729	chr17:79826554:-	MTATP6P1	7936	chr1:569325:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0439	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	4	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0439	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0439	TRUE	1	10	0	18	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPLP2	3	0	EIF1	1072	chr17:39845208:+	RPLP2	8109	chr11:809971:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	0	0	0	2	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	3	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	0	6	0	9	2	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SETD8--CDK2AP1	3	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	0	0	0	18	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUN2--IGH@	3	0	SUN2	15813	chr22:39134931:-	IGH@	119011	chr14:106321318:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	SUN2->Sad1_and_UNC84_domain_containing_2,chr22:39130730-39190148:-,IGH@->Oncogene{Bushman}	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACY1--NT5DC2	2	0	ACY1	4478	chr3:52018174:+	NT5DC2	17020	chr3:52563350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ACY1->aminoacylase_1,chr3:52009066-52023213:+,NT5DC2->5'-nucleotidase_domain_containing_2,chr3:52558386-52569070:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--INSR	2	0	DANCR	1530	chr4:53579126:+	INSR	8537	chr19:7267907:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,INSR->chr19:7112266-7294045:-,insulin_receptor	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAPK9--CANX	2	0	MAPK9	1252	chr5:179718848:-	CANX	32663	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},MAPK9->Oncogene{Bushman},chr5:179660143-179719099:-,mitogen-activated_protein_kinase_9,CANX->calnexin,chr5:179105629-179157926:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP42--SUN1	2	0	USP42	21438	chr7:6196686:+	SUN1	51910	chr7:908986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	USP42->chr7:6144515-6201195:+,ubiquitin_specific_peptidase_42,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMU1--B4GALT1	1	2	SMU1	6809	chr9:33060463:-	B4GALT1	25074	chr9:33120604:-	ONLY_REF_SPLICE	YES	44	2	0.06	0.6	0.011	0.022	LOCAL_REARRANGEMENT:-:[27415],SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans),B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.6	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-340A15.2--CTC-207P7.1	1	1	CTC-340A15.2	1501	chr5:163724202:+	CTC-207P7.1	33816	chr5:163657454:-	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.011	0.011	LOCAL_INVERSION:+:-:[62599],CTC-340A15.2->chr5:163723702-164598649:+,CTC-207P7.1->chr5:163546104-163661103:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-340A15.2--CTC-207P7.1	1	1	CTC-340A15.2	1501	chr5:163724202:+	CTC-207P7.1	34935	chr5:163621362:-	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.011	0.011	LOCAL_INVERSION:+:-:[62599],CTC-340A15.2->chr5:163723702-164598649:+,CTC-207P7.1->chr5:163546104-163661103:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000363
RCC10RGB_KIDNEY	UPF3A--CDC16	135	58	UPF3A	4015	chr13:115052104:+	CDC16	26255	chr13:115027362:+	ONLY_REF_SPLICE	YES	68	120	0.74	0.62	1.0595	0.4552	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	RCC10RGB_KIDNEY	0.62	0.74	1.5147	TRUE	0	2	0	3	2	TRUE	ACH-000189
RCC10RGB_KIDNEY	UPF3A--CDC16	103	38	UPF3A	4015	chr13:115052104:+	CDC16	27247	chr13:115028354:+	ONLY_REF_SPLICE	YES	68	129	0.67	0.52	0.8084	0.2982	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	RCC10RGB_KIDNEY	0.52	0.67	1.1066	TRUE	0	2	0	3	2	TRUE	ACH-000189
RCC10RGB_KIDNEY	TSPAN4--AP006621.5	95	28	TSPAN4	3911	chr11:847300:+	AP006621.5	16998	chr11:783530:+	ONLY_REF_SPLICE	YES	488	6	0.2	0.95	0.7456	0.2198	LOCAL_REARRANGEMENT:+:[58511],TSPAN4->chr11:842808-867116:+,tetraspanin_4,AP006621.5->chr11:777578-784297:+	RCC10RGB_KIDNEY	0.2	0.95	0.9654	TRUE	0	0	0	1	0	TRUE	ACH-000189
RCC10RGB_KIDNEY	CD63--TGFBI	65	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5101	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	RCC10RGB_KIDNEY	1	1	0.5101	TRUE	0	0	0	14	0	TRUE	ACH-000189
RCC10RGB_KIDNEY	DYNC2H1--CASP4	27	4	DYNC2H1	47202	chr11:103068792:+	CASP4	99442	chr11:104825728:-	ONLY_REF_SPLICE	YES	4	0	0.89	1	0.2119	0.0314	DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,CASP4->caspase_4,chr11:104813593-104840163:-	RCC10RGB_KIDNEY	0.89	1	0.2433	TRUE	0	0	0	1	0	TRUE	ACH-000189
RCC10RGB_KIDNEY	PKN3--SET	22	11	PKN3	4520	chr9:131469684:+	SET	15997	chr9:131446059:+	ONLY_REF_SPLICE	YES	20	3	0.62	0.92	0.1727	0.0863	LOCAL_REARRANGEMENT:+:[6123],PKN3->chr9:131464802-131483197:+,protein_kinase_N3,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RCC10RGB_KIDNEY	0.62	0.92	0.259	TRUE	0	0	0	1	0	TRUE	ACH-000189
RCC10RGB_KIDNEY	UPF3A--CDC16	5	36	UPF3A	4015	chr13:115052104:+	CDC16	27251	chr13:115028358:+	INCL_NON_REF_SPLICE	YES	68	124	0.38	0.25	0.0392	0.2825	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	RCC10RGB_KIDNEY	0.25	0.38	0.3217	TRUE	0	2	0	3	2	TRUE	ACH-000189
RCC10RGB_KIDNEY	GUSBP2--RP11-457M11.5	7	3	GUSBP2	9031	chr6:26846479:-	RP11-457M11.5	15456	chr6:26687347:+	INCL_NON_REF_SPLICE	YES	7	4	0.59	0.71	0.0549	0.0235	GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2,RP11-457M11.5->chr6:26686469-26688192:+	RCC10RGB_KIDNEY	0.59	0.71	0.0784	TRUE	1	2	0	3	2	TRUE	ACH-000189
RCC10RGB_KIDNEY	HNRNPA2B1--MPHOSPH8	2	0	HNRNPA2B1	1958	chr7:26240192:-	MPHOSPH8	29454	chr13:20245974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,MPHOSPH8->M-phase_phosphoprotein_8,chr13:20207788-20247599:+	RCC10RGB_KIDNEY	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000189
RCC10RGB_KIDNEY	RP11-467J12.4--CASC16	2	0	RP11-467J12.4	2192	chr16:53081117:-	CASC16	7619	chr16:52682024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	RP11-467J12.4->chr16:53069602-53086785:-,CASC16->cancer_susceptibility_candidate_16_(non-protein_coding),chr16:52586002-52686017:-	RCC10RGB_KIDNEY	1	1	0.0157	TRUE	0	6	0	3	6	TRUE	ACH-000189
RCC10RGB_KIDNEY	SHISA9--DERA	2	0	SHISA9	7683	chr16:13010672:+	DERA	26882	chr12:16112763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase	RCC10RGB_KIDNEY	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000189
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--CDK5RAP2	212	89	KCNAB2	11901	chr1:6100705:+	CDK5RAP2	51185	chr9:123253755:-	ONLY_REF_SPLICE	YES	322	35	0.48	0.9	2.4148	1.0138	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.9	3.4286	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	126	0	IGH@	93161	chr14:106331617:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4352	0	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.4352	TRUE	0	0	0	3	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2583A14.10--PIK3C3	83	71	CTD-2583A14.10	1227	chr19:58331313:+	PIK3C3	25196	chr18:39600602:+	ONLY_REF_SPLICE	YES	21	6	0.88	0.96	0.9454	0.8087	CTD-2583A14.10->chr19:58331087-58370309:+,PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.96	1.7541	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2583A14.10--PIK3C3	73	77	CTD-2583A14.10	1831	chr19:58331917:+	PIK3C3	25196	chr18:39600602:+	ONLY_REF_SPLICE	YES	19	6	0.89	0.96	0.8315	0.8771	CTD-2583A14.10->chr19:58331087-58370309:+,PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.96	1.7086	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--CDK5RAP2	52	93	KCNAB2	13128	chr1:6101932:+	CDK5RAP2	51185	chr9:123253755:-	ONLY_REF_SPLICE	YES	321	35	0.31	0.81	0.5923	1.0593	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.81	1.6516	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	54	1	IGH@	94353	chr14:106330425:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	168	0	0.25	1	0.6151	0.0114	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.6265	TRUE	0	0	0	3	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	38	1	IGH@	94754	chr14:106330024:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	160	0	0.2	1	0.4328	0.0114	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.4442	TRUE	0	0	0	3	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--NOX4	23	6	PICALM	14083	chr11:85711686:-	NOX4	48225	chr11:89088211:-	ONLY_REF_SPLICE	YES	36	0	0.45	1	0.262	0.0683	PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,NOX4->NADPH_oxidase_4,chr11:89057524-89322779:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	1	0.3303	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	19	2	IGH@	95370	chr14:106329408:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	160	0	0.12	1	0.2164	0.0228	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.2392	TRUE	0	0	0	3	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2583A14.10--PIK3C3	3	31	CTD-2583A14.10	1227	chr19:58331313:+	PIK3C3	28376	chr18:39607407:+	ONLY_REF_SPLICE	YES	21	17	0.62	0.67	0.0342	0.3531	CTD-2583A14.10->chr19:58331087-58370309:+,PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.67	0.3873	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--CDK5RAP2	5	18	KCNAB2	7114	chr1:6086505:+	CDK5RAP2	51185	chr9:123253755:-	ONLY_REF_SPLICE	YES	68	35	0.25	0.4	0.057	0.205	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.4	0.262	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MSH3--SERINC5	5	5	MSH3	22464	chr5:80088663:+	SERINC5	33820	chr5:79498872:-	ONLY_REF_SPLICE	YES	166	53	0.06	0.16	0.057	0.057	MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3,SERINC5->chr5:79407050-79551898:-,serine_incorporator_5	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.16	0.114	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--CDK5RAP2	5	0	KCNAB2	2323	chr1:6052848:+	CDK5RAP2	51185	chr9:123253755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MSH3--ARSB	5	0	MSH3	9246	chr5:79974912:+	ARSB	40096	chr5:78135249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3,ARSB->arylsulfatase_B,chr5:78073032-78281910:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGJ--CSDE1	3	0	IGJ	5243	chr4:71527894:-	CSDE1	19094	chr1:115282346:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	IGJ->chr4:71521258-71547534:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM2--GNAS	2	0	CALM2	1161	chr2:47403580:-	GNAS	30774	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=2,Pituitary=1},CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	2	0	2	1	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXM1--ADIPOR2	2	0	FOXM1	8548	chr12:2973486:-	ADIPOR2	20977	chr12:1863424:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	FOXM1->Oncogene{Bushman},chr12:2966847-2986206:-,forkhead_box_M1,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HOMER1--ZFYVE16	2	0	HOMER1	2448	chr5:78808593:-	ZFYVE16	22750	chr5:79729928:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	HOMER1->chr5:78668459-78810040:-,homer_scaffolding_protein_1,ZFYVE16->chr5:79703832-79775169:+,zinc_finger_FYVE-type_containing_16	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCGF3--CTBP1	2	0	PCGF3	1223	chr4:699759:+	CTBP1	24300	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PCGF3->chr4:699537-764428:+,polycomb_group_ring_finger_3,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	1	0	2	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POU2F1--RCSD1	2	0	POU2F1	1130	chr1:167190195:+	RCSD1	51671	chr1:167653137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,RCSD1->RCSD_domain_containing_1,chr1:167599330-167675486:+	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	2	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STIM2--SEL1L3	2	0	STIM2	1670	chr4:26859969:+	SEL1L3	28129	chr4:25849486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	STIM2->chr4:26859300-27027003:+,stromal_interaction_molecule_2,SEL1L3->SEL1L_family_member_3,chr4:25749055-25865382:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000287
MCAS_OVARY	BAIAP2L1--BCAS4	410	112	BAIAP2L1	4549	chr7:97984354:-	BCAS4	28604	chr20:49493023:+	ONLY_REF_SPLICE	YES	72	23	0.88	0.96	6.4871	1.7721	{Klijn_CCL:Ovary=1},BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+	MCAS_OVARY	0.88	0.96	8.2592	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	SEMA3A--ARFGEF2	145	55	SEMA3A	18041	chr7:83634655:-	ARFGEF2	34713	chr20:47557736:+	ONLY_REF_SPLICE	YES	388	14	0.34	0.93	2.2942	0.8702	{Klijn_CCL:Ovary=1},SEMA3A->chr7:83585093-84122040:-,semaphorin_3A,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	MCAS_OVARY	0.34	0.93	3.1644	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	GS1-124K5.12--MAGI2	50	13	GS1-124K5.12	1130	chr7:66057244:-	MAGI2	38162	chr7:77764523:-	ONLY_REF_SPLICE	YES	14	9	0.82	0.88	0.7911	0.2057	GS1-124K5.12->chr7:66010634-66057373:-,MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2	MCAS_OVARY	0.82	0.88	0.9968	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	BAIAP2L1--BCAS4	17	114	BAIAP2L1	4549	chr7:97984354:-	BCAS4	28115	chr20:49492534:+	ONLY_REF_SPLICE	YES	72	26	0.65	0.83	0.269	1.8037	{Klijn_CCL:Ovary=1},BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+	MCAS_OVARY	0.65	0.83	2.0727	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	ADNP--ADAM9	26	47	ADNP	2771	chr20:49545188:-	ADAM9	25548	chr8:38879162:+	ONLY_REF_SPLICE	YES	41	477	0.64	0.13	0.4114	0.7436	ADNP->activity-dependent_neuroprotector_homeobox,chr20:49505585-49547958:-,ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+	MCAS_OVARY	0.13	0.64	1.155	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	BAIAP2L1--BCAS4	4	112	BAIAP2L1	4549	chr7:97984354:-	BCAS4	28607	chr20:49493026:+	INCL_NON_REF_SPLICE	YES	72	23	0.62	0.83	0.0633	1.7721	{Klijn_CCL:Ovary=1},BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+	MCAS_OVARY	0.62	0.83	1.8354	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	BAIAP2L1--BCAS4	5	71	BAIAP2L1	4510	chr7:97984393:-	BCAS4	28604	chr20:49493023:+	INCL_NON_REF_SPLICE	YES	55	23	0.58	0.77	0.0791	1.1234	{Klijn_CCL:Ovary=1},BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+	MCAS_OVARY	0.58	0.77	1.2025	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	ADAM9--SSPN	21	5	ADAM9	14387	chr8:38899636:+	SSPN	36968	chr12:26377226:+	ONLY_REF_SPLICE	YES	499	2	0.05	0.93	0.3323	0.0791	{Klijn_CCL:Ovary=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	MCAS_OVARY	0.05	0.93	0.4114	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	ADAM9--POM121	16	7	ADAM9	14387	chr8:38899636:+	POM121	48677	chr7:72418867:+	ONLY_REF_SPLICE	YES	499	16	0.04	0.59	0.2532	0.1108	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,POM121->POM121_transmembrane_nucleoporin,chr7:72349936-72421979:+	MCAS_OVARY	0.04	0.59	0.364	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	WBSCR22--SEMA3A	14	9	WBSCR22	1780	chr7:73098134:+	SEMA3A	32610	chr7:83636813:-	ONLY_REF_SPLICE	YES	70	413	0.25	0.05	0.2215	0.1424	{Klijn_CCL:Ovary=1},WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+,SEMA3A->chr7:83585093-84122040:-,semaphorin_3A	MCAS_OVARY	0.05	0.25	0.3639	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	WBSCR22--SEMA3A	11	7	WBSCR22	1780	chr7:73098134:+	SEMA3A	33755	chr7:83634874:-	ONLY_REF_SPLICE	YES	70	468	0.2	0.04	0.174	0.1108	{Klijn_CCL:Ovary=1},WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+,SEMA3A->chr7:83585093-84122040:-,semaphorin_3A	MCAS_OVARY	0.04	0.2	0.2848	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	BAIAP2L1--BCAS4	1	37	BAIAP2L1	3164	chr7:97991669:-	BCAS4	28604	chr20:49493023:+	ONLY_REF_SPLICE	NO	32	23	0.54	0.62	0.0158	0.5854	{Klijn_CCL:Ovary=1},BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+	MCAS_OVARY	0.54	0.62	0.6012	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	CDK14--ARFGEF2	8	2	CDK14	14948	chr7:90419967:+	ARFGEF2	57561	chr20:47614730:+	ONLY_REF_SPLICE	YES	36	27	0.22	0.27	0.1266	0.0316	CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	MCAS_OVARY	0.22	0.27	0.1582	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	GS1-259H13.10--RP11-150O12.2	7	5	GS1-259H13.10	2283	chr7:99158318:+	RP11-150O12.2	10863	chr8:37337607:+	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.1108	0.0791	GS1-259H13.10->chr7:99156291-99205433:+,RP11-150O12.2->chr8:37337607-37338327:+	MCAS_OVARY	0.75	1	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	LINC00973--ST3GAL6	7	5	LINC00973	2400	chr3:98701378:+	ST3GAL6	19010	chr3:98503789:+	INCL_NON_REF_SPLICE	YES	153	3	0.07	0.8	0.1108	0.0791	LINC00973->chr3:98699902-98701940:+,long_intergenic_non-protein_coding_RNA_973,ST3GAL6->ST3_beta-galactoside_alpha-2,3-sialyltransferase_6,chr3:98451080-98540045:+	MCAS_OVARY	0.07	0.8	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	STAG3L1--ADNP	7	5	STAG3L1	5752	chr7:74995707:+	ADNP	21625	chr20:49511049:-	ONLY_REF_SPLICE	YES	52	88	0.19	0.12	0.1108	0.0791	STAG3L1->chr7:74988448-75024657:+,stromal_antigen_3-like_1_(pseudogene),ADNP->activity-dependent_neuroprotector_homeobox,chr20:49505585-49547958:-	MCAS_OVARY	0.12	0.19	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	GS1-124K5.12--MAGI2	6	6	GS1-124K5.12	1130	chr7:66057244:-	MAGI2	39348	chr7:77762377:-	ONLY_REF_SPLICE	YES	14	24	0.46	0.33	0.0949	0.0949	GS1-124K5.12->chr7:66010634-66057373:-,MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2	MCAS_OVARY	0.33	0.46	0.1898	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	GTF2IRD1--IKBKB	5	2	GTF2IRD1	1387	chr7:73868506:+	IKBKB	34772	chr8:42129601:+	ONLY_REF_SPLICE	YES	18	9	0.28	0.44	0.0791	0.0316	GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+,IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta	MCAS_OVARY	0.28	0.44	0.1107	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	SEMA3A--ARFGEF2	1	16	SEMA3A	18041	chr7:83634655:-	ARFGEF2	36502	chr20:47567860:+	ONLY_REF_SPLICE	YES	388	99	0.04	0.15	0.0158	0.2532	{Klijn_CCL:Ovary=1},SEMA3A->chr7:83585093-84122040:-,semaphorin_3A,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	MCAS_OVARY	0.04	0.15	0.269	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	SGCE--PPP4R1L	5	0	SGCE	1220	chr7:94285302:-	PPP4R1L	25021	chr20:56826920:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0791	0	SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon,PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene)	MCAS_OVARY	1	1	0.0791	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	WBSCR22--SEMA3A	5	0	WBSCR22	1649	chr7:73098003:+	SEMA3A	33755	chr7:83634874:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0791	0	{Klijn_CCL:Ovary=1},WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+,SEMA3A->chr7:83585093-84122040:-,semaphorin_3A	MCAS_OVARY	1	1	0.0791	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	AC004893.11--GS1-124K5.10	4	1	AC004893.11	2791	chr7:98612578:+	GS1-124K5.10	14762	chr7:65978252:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0633	0.0158	AC004893.11->chr7:98610788-98645863:+,GS1-124K5.10->chr7:65976543-66010053:+	MCAS_OVARY	0.56	1	0.0791	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	OSBPL9--TTC34	2	5	OSBPL9	5662	chr1:52117713:+	TTC34	45321	chr1:2577002:-	ONLY_REF_SPLICE	YES	145	0	0.05	1	0.0316	0.0791	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,TTC34->chr1:2567415-2718286:-,tetratricopeptide_repeat_domain_34	MCAS_OVARY	0.05	1	0.1107	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	AC104389.28--HBE1	1	7	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	56	2	0.12	0.8	0.0158	0.1108	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MCAS_OVARY	0.12	0.8	0.1266	TRUE	0	0	0	9	0	TRUE	ACH-000796
MCAS_OVARY	ADAM9--SSPN	2	0	ADAM9	14387	chr8:38899636:+	SSPN	41300	chr12:26405801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	{Klijn_CCL:Ovary=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	MCAS_OVARY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	BAIAP2L1--TRRAP	2	0	BAIAP2L1	3164	chr7:97991669:-	TRRAP	28982	chr7:98495364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,TRRAP->chr7:98475556-98610866:+,transformation/transcription_domain_associated_protein	MCAS_OVARY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	FAM60A--YWHAZ	2	0	FAM60A	4052	chr12:31476878:-	YWHAZ	26999	chr8:101937267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	MCAS_OVARY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	GAS6--TFDP1	2	0	GAS6	1499	chr13:114566548:-	TFDP1	22838	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_Transformed_fibroblasts=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	MCAS_OVARY	1	1	0.0316	TRUE	0	1	0	5	0	TRUE	ACH-000796
MCAS_OVARY	OSBPL9--TTC34	2	0	OSBPL9	6741	chr1:52135184:+	TTC34	46406	chr1:2575917:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,TTC34->chr1:2567415-2718286:-,tetratricopeptide_repeat_domain_34	MCAS_OVARY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	CTD-2021J15.1--ST3GAL6	1	2	CTD-2021J15.1	3703	chr3:98737406:+	ST3GAL6	19751	chr3:98503789:+	ONLY_REF_SPLICE	NO	0	3	1	0.5	0.0158	0.0316	LOCAL_REARRANGEMENT:+:[81223],CTD-2021J15.1->chr3:98621268-98737406:+,ST3GAL6->ST3_beta-galactoside_alpha-2,3-sialyltransferase_6,chr3:98451080-98540045:+	MCAS_OVARY	0.5	1	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	GTF2IRD1--IKBKB	1	2	GTF2IRD1	1387	chr7:73868506:+	IKBKB	36119	chr8:42146152:+	ONLY_REF_SPLICE	NO	18	41	0.14	0.07	0.0158	0.0316	GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+,IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta	MCAS_OVARY	0.07	0.14	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000796
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--IGLL5	96	27	PVT1	21462	chr8:129095036:+	IGLL5	28831	chr22:23230339:+	INCL_NON_REF_SPLICE	YES	8	0	0.94	1	0.9063	0.2549	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	1.1612	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--IGLL5	70	41	PVT1	21556	chr8:129095130:+	IGLL5	28829	chr22:23230337:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.6609	0.3871	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	1.048	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCG4P5--EEF2	3	2	HCG4P5	1523	chr6:29910322:-	EEF2	5033	chr19:3985428:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0283	0.0189	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0472	TRUE	0	0	0	3	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--PTMA	3	0	AC096579.7	4062	chr2:89156856:-	PTMA	10062	chr2:232573242:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	AC096579.7->chr2:89130700-89165653:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	3	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FERMT3--UBAP2	3	0	FERMT3	8968	chr11:63991231:+	UBAP2	36900	chr9:33933550:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	FERMT3->chr11:63974150-63991354:+,fermitin_family_member_3,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTHFD2--SEPT2	3	0	MTHFD2	1181	chr2:74425869:+	SEPT2	31723	chr2:242289488:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	MTHFD2->chr2:74425689-74444692:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_2,_methenyltetrahydrofolate_cyclohydrolase,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RLF--MYCL	3	0	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	10	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A11--B2M	3	0	SLC25A11	1406	chr17:4843141:-	B2M	9602	chr15:45007640:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	SLC25A11->chr17:4840425-4843546:-,solute_carrier_family_25_member_11,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INPP5D--MROH2A	1	5	INPP5D	8439	chr2:233995358:+	MROH2A	39240	chr2:234687991:+	ONLY_REF_SPLICE	YES	115	0	0.05	1	0.0094	0.0472	INPP5D->chr2:233924677-234116549:+,inositol_polyphosphate-5-phosphatase_D,MROH2A->chr2:234684370-234742069:+,maestro_heat_like_repeat_family_member_2A	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0566	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARID1B--TMEM242	2	0	ARID1B	8327	chr6:157256710:+	TMEM242	43957	chr6:157714031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=1;pct=0.01%;dist=Bladder=1},ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,TMEM242->chr6:157710418-157744633:-,transmembrane_protein_242	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASCC1--FCRL1	2	0	ASCC1	10097	chr10:73956569:-	FCRL1	27774	chr1:157772454:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,FCRL1->Fc_receptor_like_1,chr1:157764193-157789895:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASTN2--PSMG3	2	0	ASTN2	19387	chr9:119449345:-	PSMG3	38317	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ASTN2->Oncogene{Bushman},astrotactin_2,chr9:119187504-120177348:-,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf58--RRAS2	2	0	C11orf58	3845	chr11:16760388:+	RRAS2	28288	chr11:14317401:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	C11orf58->chr11:16634679-16778428:+,chromosome_11_open_reading_frame_58,RRAS2->Oncogene{Bushman},chr11:14299472-14386052:-,related_RAS_viral_(r-ras)_oncogene_homolog_2	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C9orf64--COX7A2	2	0	C9orf64	2606	chr9:86570296:-	COX7A2	15655	chr6:75947704:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	C9orf64->chr9:86553226-86571901:-,chromosome_9_open_reading_frame_64,COX7A2->chr6:75947391-75960039:-,cytochrome_c_oxidase_subunit_7A2	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD38--ATP6AP1L	2	0	CD38	1373	chr4:15780270:+	ATP6AP1L	25003	chr5:81605976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CD38->CD38_molecule,chr4:15779898-15854853:+,ATP6AP1L->ATPase_H+_transporting_accessory_protein_1_like,chr5:81575281-81682796:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD53--LBR	2	0	CD53	4334	chr1:111435155:+	LBR	23988	chr1:225599142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CD53->CD53_molecule,Oncogene{Bushman},chr1:111415775-111442550:+,LBR->chr1:225589204-225616627:-,lamin_B_receptor	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC25C--UBE2D2	2	0	CDC25C	3286	chr5:137666676:-	UBE2D2	24347	chr5:139006341:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT2--PSMB1	2	0	CNOT2	1487	chr12:70637260:+	PSMB1	37790	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--PHF8	2	0	CTC-459F4.3	5385	chr19:28289084:+	PHF8	25566	chrX:54037717:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CTC-459F4.3->chr19:28284371-28409771:+,PHF8->PHD_finger_protein_8,chrX:53963109-54075391:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC15--TMEM141	2	0	DNAJC15	1532	chr13:43597870:+	TMEM141	12084	chr9:139686163:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	DNAJC15->DnaJ_heat_shock_protein_family_(Hsp40)_member_C15,chr13:43597339-43683045:+,TMEM141->chr9:139685807-139687709:+,transmembrane_protein_141	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--PASK	2	0	EEF2	1092	chr19:3985376:-	PASK	31269	chr2:242054828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FXR1--USP13	2	0	FXR1	3131	chr3:180630524:+	USP13	54524	chr3:179499527:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},{Klijn_CCL:Lung=1},FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+,USP13->chr3:179370543-179507189:+,ubiquitin_specific_peptidase_13_(isopeptidase_T-3)	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GS1-259H13.10--BRCA1	2	0	GS1-259H13.10	2283	chr7:99158318:+	BRCA1	33767	chr17:41215968:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GS1-259H13.10->chr7:99156291-99205433:+,BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTDC1--EEF1D	2	0	GTDC1	11556	chr2:144966170:-	EEF1D	50356	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HPS1--HNRNPA1	2	0	HPS1	3352	chr10:100202881:-	HNRNPA1	26597	chr12:54677596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	HPS1->HPS1,_biogenesis_of_lysosomal_organelles_complex_3_subunit_1,chr10:100175955-100206684:-,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--RP11-141M1.3	2	0	IGLL5	1480	chr22:23230439:+	RP11-141M1.3	11800	chr13:34098509:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,RP11-141M1.3->chr13:33929343-34250905:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00338--TUBGCP6	2	0	LINC00338	4678	chr17:75089429:+	TUBGCP6	22953	chr22:50658444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	LINC00338->chr17:75082798-75091068:+,TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LZTS2--RP11-1055B8.7	2	0	LZTS2	1617	chr10:102756991:+	RP11-1055B8.7	22038	chr17:79405396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	LZTS2->chr10:102756375-102767593:+,leucine_zipper,_putative_tumor_suppressor_2,RP11-1055B8.7->chr17:79373540-79433357:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PDIA5	2	0	MLLT10	1640	chr10:21823733:+	PDIA5	38421	chr3:122808015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PDIA5->chr3:122785909-122944074:+,protein_disulfide_isomerase_family_A_member_5	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRRF--SNRPC	2	0	MRRF	7692	chr9:125054119:+	SNRPC	19146	chr6:34741223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	MRRF->chr9:125026882-125085743:+,mitochondrial_ribosome_recycling_factor,SNRPC->chr6:34725183-34741571:+,small_nuclear_ribonucleoprotein_polypeptide_C	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP205--MARCH5	2	0	NUP205	19998	chr7:135289208:+	MARCH5	53007	chr10:94110848:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	NUP205->chr7:135242667-135333505:+,nucleoporin_205kDa,MARCH5->chr10:94050920-94113721:+,membrane_associated_ring-CH-type_finger_5	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCED1B--HMGB1	2	0	PCED1B	3674	chr12:47610472:+	HMGB1	15615	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PCED1B->PC-esterase_domain_containing_1B,chr12:47473386-47630443:+,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDAP1--ATP5J2	2	0	PDAP1	1294	chr7:99006159:-	ATP5J2	14961	chr7:99057816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	LOCAL_REARRANGEMENT:-:[39646],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,ATP5J2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F2,chr7:99046098-99063954:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDS5B--FOXO1	2	0	PDS5B	1167	chr13:33160730:+	FOXO1	51275	chr13:41134997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLD3--C11orf30	2	0	POLD3	3687	chr11:74305161:+	C11orf30	38810	chr11:76224430:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	POLD3->chr11:74204896-74380162:+,polymerase_(DNA)_delta_3,_accessory_subunit,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKD3--GSR	2	0	PRKD3	5408	chr2:37520276:-	GSR	37307	chr8:30557652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PRKD3->chr2:37477645-37551951:-,protein_kinase_D3,GSR->chr8:30535583-30585443:-,glutathione_reductase	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB1B--KIF2C	2	0	RAB1B	2825	chr11:66039931:+	KIF2C	22803	chr1:45228018:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RAB1B->RAB1B,_member_RAS_oncogene_family,chr11:66036004-66044963:+,KIF2C->chr1:45205490-45233439:+,kinesin_family_member_2C	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB3GAP2--METTL3	2	0	RAB3GAP2	10995	chr1:220384143:-	METTL3	52302	chr14:21967281:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RAB3GAP2->RAB3_GTPase_activating_non-catalytic_protein_subunit_2,chr1:220321635-220445796:-,METTL3->chr14:21966277-21979517:-,methyltransferase_like_3	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASA2--PER3	2	0	RASA2	6648	chr3:141272782:+	PER3	37004	chr1:7854017:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,PER3->chr1:7844380-7905237:+,period_circadian_clock_3	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-620J15.3--SFI1	2	0	RP11-620J15.3	1706	chr12:58329253:-	SFI1	24759	chr22:31979861:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RP11-620J15.3->chr12:58325311-58329958:-,SFI1->SFI1_centrin_binding_protein,chr22:31884674-32014572:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL7L1--ZNF451	2	0	RPL7L1	6133	chr6:42852488:+	ZNF451	35502	chr6:56999542:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RPL7L1->chr6:42847356-42857663:+,ribosomal_protein_L7_like_1,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEP15--C4orf21	2	0	SEP15	1397	chr1:87379711:-	C4orf21	29133	chr4:113511030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SEP15->chr1:87328132-87380107:-,C4orf21->chr4:113460492-113558151:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3TC1--ACAD8	2	0	SH3TC1	20030	chr4:8230371:+	ACAD8	41934	chr11:134134802:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SH3TC1->SH3_domain_and_tetratricopeptide_repeats_1,chr4:8183799-8243530:+,ACAD8->acyl-CoA_dehydrogenase_family_member_8,chr11:134123389-134135749:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A45--HP1BP3	2	0	SLC25A45	2827	chr11:65149346:-	HP1BP3	19519	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SLC25A45->chr11:65142663-65151172:-,solute_carrier_family_25_member_45,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX1--SIMC1	2	0	SNX1	16733	chr15:64429131:+	SIMC1	33690	chr5:175716657:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SNX1->chr15:64386322-64438289:+,sorting_nexin_1,SIMC1->SUMO_interacting_motifs_containing_1,chr5:175665365-175772994:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRGAP2B--ZNF431	2	0	SRGAP2B	6684	chr1:144094424:+	ZNF431	22051	chr19:21372668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+,ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBCK--TIAL1	2	0	TBCK	10151	chr4:107181594:-	TIAL1	51464	chr10:121347760:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-,TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THRAP3--MINOS1	2	0	THRAP3	1090	chr1:36690106:+	MINOS1	25997	chr1:19948594:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMX3--RTTN	2	0	TMX3	4617	chr18:66377258:-	RTTN	63013	chr18:67733158:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	TMX3->chr18:66340925-66382535:-,thioredoxin_related_transmembrane_protein_3,RTTN->chr18:67671029-67873181:-,rotatin	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM16--SEPHS1	2	0	TRIM16	5362	chr17:15580490:-	SEPHS1	22254	chr10:13387028:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	TRIM16->chr17:15531274-15587625:-,tripartite_motif_containing_16,SEPHS1->chr10:13359424-13390297:-,selenophosphate_synthetase_1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR18--TMED7	2	0	WDR18	3501	chr19:985975:+	TMED7	12747	chr5:114961679:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	WDR18->WD_repeat_domain_18,chr19:983174-994569:+,TMED7->chr5:114949205-114968689:-,transmembrane_p24_trafficking_protein_7	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR27--FUS	2	0	WDR27	4147	chr6:170072351:-	FUS	45268	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	WDR27->WD_repeat_domain_27,chr6:169857307-170102159:-,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF175--WIPI2	2	0	ZNF175	4754	chr19:52085135:+	WIPI2	23500	chr7:5265454:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ZNF175->chr19:52074551-52092991:+,zinc_finger_protein_175,WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF519--MIB1	2	0	ZNF519	2343	chr18:14124349:-	MIB1	25156	chr18:19345733:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--C12orf65	2	0	ZNF738	7035	chr19:21558766:+	C12orf65	19930	chr12:123738194:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,C12orf65->chr12:123717463-123742506:+,chromosome_12_open_reading_frame_65	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DESI2--CNST	1	1	DESI2	1421	chr1:244816657:+	CNST	15451	chr1:246754814:+	ONLY_REF_SPLICE	NO	12	29	0.14	0.06	0.0094	0.0094	DESI2->chr1:244816237-244872335:+,desumoylating_isopeptidase_2,CNST->chr1:246729746-246831886:+,consortin,_connexin_sorting_protein	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.14	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RLF--MYCL	1	1	RLF	1264	chr1:40627308:+	MYCL	18060	chr1:40367115:-	ONLY_REF_SPLICE	YES	27	0	0.07	1	0.0094	0.0094	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0188	TRUE	0	0	0	6	0	TRUE	ACH-000656
NCIH854_LUNG	SKIL--CCNL1	267	85	SKIL	4752	chr3:170079217:+	CCNL1	24650	chr3:156870030:-	ONLY_REF_SPLICE	YES	30	82	0.92	0.81	2.9035	0.9243	SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+,CCNL1->chr3:156864297-156878549:-,cyclin_L1	NCIH854_LUNG	0.81	0.92	3.8278	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	PHC3--CCNL1	74	30	PHC3	5524	chr3:169889161:-	CCNL1	45318	chr3:156868170:-	ONLY_REF_SPLICE	YES	13	112	0.89	0.48	0.8047	0.3262	PHC3->chr3:169804520-169899537:-,polyhomeotic_homolog_3,CCNL1->chr3:156864297-156878549:-,cyclin_L1	NCIH854_LUNG	0.48	0.89	1.1309	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	TSC22D2--RP11-139K4.2	78	14	TSC22D2	3974	chr3:150129095:+	RP11-139K4.2	22456	chr3:182216211:-	ONLY_REF_SPLICE	YES	15	0	0.86	1	0.8482	0.1522	TSC22D2->TSC22_domain_family_member_2,chr3:150126122-150184218:+,RP11-139K4.2->chr3:182216052-182224912:-	NCIH854_LUNG	0.86	1	1.0004	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	TRAPPC9--RP11-501O2.5	29	9	TRAPPC9	9369	chr8:141407719:-	RP11-501O2.5	68476	chr3:148006722:+	ONLY_REF_SPLICE	YES	73	0	0.34	1	0.3154	0.0979	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,RP11-501O2.5->chr3:147998678-148117743:+	NCIH854_LUNG	0.34	1	0.4133	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	SENP7--MLLT10P1	23	8	SENP7	12734	chr3:101080559:-	MLLT10P1	31976	chr20:29638054:-	INCL_NON_REF_SPLICE	YES	11	0	0.74	1	0.2501	0.087	SENP7->SUMO1/sentrin_specific_peptidase_7,chr3:101043049-101232085:-,MLLT10P1->chr20:29637799-29638060:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10_pseudogene_1	NCIH854_LUNG	0.74	1	0.3371	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	WARS2--NRD1	18	1	WARS2	1117	chr1:119683178:-	NRD1	16778	chr1:52306186:-	ONLY_REF_SPLICE	YES	7	58	0.73	0.25	0.1957	0.0109	WARS2->chr1:119573839-119683294:-,tryptophanyl_tRNA_synthetase_2,_mitochondrial,NRD1->chr1:52254863-52344477:-	NCIH854_LUNG	0.25	0.73	0.2066	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	NMD3--TMEM212	13	12	NMD3	7384	chr3:160951267:+	TMEM212	24236	chr3:171569772:+	ONLY_REF_SPLICE	YES	133	0	0.16	1	0.1414	0.1305	NMD3->NMD3_ribosome_export_adaptor,chr3:160822484-160971320:+,TMEM212->chr3:171561139-171656505:+,transmembrane_protein_212	NCIH854_LUNG	0.16	1	0.2719	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	SKIL--CCNL1	6	37	SKIL	4752	chr3:170079217:+	CCNL1	24961	chr3:156869719:-	ONLY_REF_SPLICE	YES	30	87	0.59	0.33	0.0652	0.4024	SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+,CCNL1->chr3:156864297-156878549:-,cyclin_L1	NCIH854_LUNG	0.33	0.59	0.4676	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	CCSER1--RP11-115D19.1	15	0	CCSER1	6160	chr4:91234198:+	RP11-115D19.1	41644	chr4:90508972:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1631	0	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	NCIH854_LUNG	1	1	0.1631	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	RFX7--RP11-356M20.1	12	7	RFX7	3247	chr15:56471468:-	RP11-356M20.1	22807	chr15:59700353:-	ONLY_REF_SPLICE	YES	11	0	0.63	1	0.1305	0.0761	RFX7->chr15:56379478-56535483:-,regulatory_factor_X7,RP11-356M20.1->chr15:59699162-59700353:-	NCIH854_LUNG	0.63	1	0.2066	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	TSC22D2--SPTSSB	11	6	TSC22D2	3974	chr3:150129095:+	SPTSSB	22224	chr3:161077682:-	ONLY_REF_SPLICE	YES	15	10	0.53	0.63	0.1196	0.0652	TSC22D2->TSC22_domain_family_member_2,chr3:150126122-150184218:+,SPTSSB->chr3:161062580-161090668:-,serine_palmitoyltransferase_small_subunit_B	NCIH854_LUNG	0.53	0.63	0.1848	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	PHC3--CCNL1	3	25	PHC3	5507	chr3:169889178:-	CCNL1	45318	chr3:156868170:-	ONLY_REF_SPLICE	YES	12	112	0.7	0.2	0.0326	0.2719	PHC3->chr3:169804520-169899537:-,polyhomeotic_homolog_3,CCNL1->chr3:156864297-156878549:-,cyclin_L1	NCIH854_LUNG	0.2	0.7	0.3045	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	SEPT11--CCNG2	8	2	SEPT11	1228	chr4:77871083:+	CCNG2	30949	chr4:78079686:+	ONLY_REF_SPLICE	YES	43	87	0.19	0.1	0.087	0.0217	SEPT11->chr4:77870856-77961537:+,septin_11,CCNG2->chr4:78078304-78354542:+,cyclin_G2	NCIH854_LUNG	0.1	0.19	0.1087	TRUE	0	1	0	4	1	TRUE	ACH-000710
NCIH854_LUNG	STAG1--CBLB	8	2	STAG1	13772	chr3:136219065:-	CBLB	54953	chr3:105456102:-	ONLY_REF_SPLICE	YES	11	14	0.48	0.42	0.087	0.0217	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,CBLB->Cbl_proto-oncogene_B,Oncogene{Bushman},chr3:105374305-105588396:-	NCIH854_LUNG	0.42	0.48	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	NDRG1--RPS18	3	0	NDRG1	17796	chr8:134262694:-	RPS18	31712	chr6:33239868:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	NCIH854_LUNG	1	1	0.0326	TRUE	0	0	0	2	0	TRUE	ACH-000710
NCIH854_LUNG	RFX7--RP11-356M20.1	1	7	RFX7	4490	chr15:56452914:-	RP11-356M20.1	22807	chr15:59700353:-	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0109	0.0761	RFX7->chr15:56379478-56535483:-,regulatory_factor_X7,RP11-356M20.1->chr15:59699162-59700353:-	NCIH854_LUNG	0.42	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	ADAP1--SUN1	2	0	ADAP1	9672	chr7:959605:-	SUN1	48590	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	NCIH854_LUNG	1	1	0.0217	TRUE	0	4	0	9	2	TRUE	ACH-000710
NCIH854_LUNG	GNPDA2--TBCK	2	0	GNPDA2	1122	chr4:44728491:-	TBCK	53207	chr4:107037535:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GNPDA2->chr4:44684217-44728612:-,glucosamine-6-phosphate_deaminase_2,TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-	NCIH854_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	PLS1--U2SURP	2	0	PLS1	1123	chr3:142315351:+	U2SURP	33383	chr3:142729657:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PLS1->chr3:142315229-142432506:+,plastin_1,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	NCIH854_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	RFX7--RP11-356M20.1	1	4	RFX7	1161	chr15:56535323:-	RP11-356M20.1	22807	chr15:59700353:-	ONLY_REF_SPLICE	NO	6	0	0.45	1	0.0109	0.0435	RFX7->chr15:56379478-56535483:-,regulatory_factor_X7,RP11-356M20.1->chr15:59699162-59700353:-	NCIH854_LUNG	0.45	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	TMEM181--DYNLT1	2	0	TMEM181	6914	chr6:159010814:+	DYNLT1	27019	chr6:159058926:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Testis=1},LOCAL_INVERSION:+:-:[1046],TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	NCIH854_LUNG	1	1	0.0217	TRUE	0	5	0	4	0	TRUE	ACH-000710
NCIH854_LUNG	AC074363.1--B3GALT1	1	2	AC074363.1	2265	chr2:168346787:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0109	0.0217	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	NCIH854_LUNG	1	1	0.0326	TRUE	0	4	2	6	4	TRUE	ACH-000710
NCIH854_LUNG	WARS2--NRD1	1	2	WARS2	1404	chr1:119682891:-	NRD1	16778	chr1:52306186:-	ONLY_REF_SPLICE	YES	1	58	0.75	0.05	0.0109	0.0217	WARS2->chr1:119573839-119683294:-,tryptophanyl_tRNA_synthetase_2,_mitochondrial,NRD1->chr1:52254863-52344477:-	NCIH854_LUNG	0.05	0.75	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000710
A2780_OVARY	WTAPP1--DYNC2H1	13	11	WTAPP1	10546	chr11:102703637:+	DYNC2H1	100094	chr11:103228971:+	ONLY_REF_SPLICE	YES	1	79	0.96	0.23	0.1441	0.1219	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	A2780_OVARY	0.23	0.96	0.266	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	AP003900.6--AC008132.1	8	22	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.0887	0.2439	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	A2780_OVARY	0.94	1	0.3326	TRUE	0	0	0	12	0	TRUE	ACH-000657
A2780_OVARY	LRRC4C--RP11-148I19.1	11	4	LRRC4C	1343	chr11:41480981:-	RP11-148I19.1	17348	chr11:42185401:-	ONLY_REF_SPLICE	YES	9	0	0.62	1	0.1219	0.0443	LRRC4C->chr11:40135753-41481323:-,leucine_rich_repeat_containing_4C,RP11-148I19.1->chr11:42014935-42185401:-	A2780_OVARY	0.62	1	0.1662	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	RP11-95P2.1--CORO7	6	6	RP11-95P2.1	2856	chr16:4301323:-	CORO7	26672	chr16:4412739:-	ONLY_REF_SPLICE	YES	8	31	0.6	0.28	0.0665	0.0665	RP11-95P2.1->chr16:4295826-4303790:-,CORO7->chr16:4404543-4475706:-,coronin_7	A2780_OVARY	0.28	0.6	0.133	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	VIM--PPIA	6	0	VIM	2122	chr10:17271379:+	PPIA	12215	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	VIM->chr10:17270258-17279592:+,vimentin,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	A2780_OVARY	1	1	0.0665	TRUE	0	0	0	6	0	TRUE	ACH-000657
A2780_OVARY	RP11-95P2.1--CORO7	4	5	RP11-95P2.1	1143	chr16:4303648:-	CORO7	26672	chr16:4412739:-	ONLY_REF_SPLICE	YES	11	31	0.45	0.23	0.0443	0.0554	RP11-95P2.1->chr16:4295826-4303790:-,CORO7->chr16:4404543-4475706:-,coronin_7	A2780_OVARY	0.23	0.45	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	WTAPP1--DYNC2H1	1	11	WTAPP1	11204	chr11:102704295:+	DYNC2H1	100094	chr11:103228971:+	ONLY_REF_SPLICE	NO	0	79	1	0.13	0.0111	0.1219	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	A2780_OVARY	0.13	1	0.133	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	MDH2--RPS28	3	0	MDH2	1113	chr7:75677481:+	RPS28	14621	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	MDH2->chr7:75677369-75696826:+,malate_dehydrogenase_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	A2780_OVARY	1	1	0.0333	TRUE	0	0	0	2	0	TRUE	ACH-000657
A2780_OVARY	DLX1--HAT1	2	0	DLX1	3114	chr2:172951581:+	HAT1	15834	chr2:172821859:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	DLX1->chr2:172949468-172954405:+,distal-less_homeobox_1,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	A2780_OVARY	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	TTLL4--TXNRD1	2	0	TTLL4	1193	chr2:219575760:+	TXNRD1	24021	chr12:104645305:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	TTLL4->chr2:219575568-219620139:+,tubulin_tyrosine_ligase_like_4,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	A2780_OVARY	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	ZFAND6--AAGAB	2	0	ZFAND6	1242	chr15:80352151:+	AAGAB	30080	chr15:67501882:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	ZFAND6->chr15:80351910-80430735:+,zinc_finger_AN1-type_containing_6,AAGAB->alpha-_and_gamma-adaptin_binding_protein,chr15:67493371-67547533:-	A2780_OVARY	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	NACC2--SPSB2	1	1	NACC2	1097	chr9:138987035:-	SPSB2	17833	chr12:6991451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0111	0.0111	NACC2->NACC_family_member_2,chr9:138898383-138987131:-,SPSB2->chr12:6980099-6998522:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_2	A2780_OVARY	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000657
SIMA_AUTONOMIC_GANGLIA	VSNL1--AC064875.2	82	61	VSNL1	7070	chr2:17773503:+	AC064875.2	18616	chr2:13121244:-	ONLY_REF_SPLICE	YES	19	92	0.88	0.61	0.8097	0.6023	VSNL1->chr2:17720393-17838285:+,visinin_like_1,AC064875.2->chr2:13106910-13147138:-	SIMA_AUTONOMIC_GANGLIA	0.61	0.88	1.412	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	VSNL1--AC064875.2	73	39	VSNL1	7070	chr2:17773503:+	AC064875.2	19698	chr2:13108159:-	ONLY_REF_SPLICE	YES	19	88	0.85	0.56	0.7208	0.3851	VSNL1->chr2:17720393-17838285:+,visinin_like_1,AC064875.2->chr2:13106910-13147138:-	SIMA_AUTONOMIC_GANGLIA	0.56	0.85	1.1059	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ANP32B--NCL	54	0	ANP32B	9252	chr9:100774754:+	NCL	18675	chr2:232326421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5332	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SIMA_AUTONOMIC_GANGLIA	1	1	0.5332	TRUE	0	0	0	7	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ANP32B--NCL	31	0	ANP32B	8161	chr9:100773632:+	NCL	19608	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3061	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SIMA_AUTONOMIC_GANGLIA	1	1	0.3061	TRUE	0	0	0	7	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ANP32B--NCL	14	0	ANP32B	8161	chr9:100773632:+	NCL	18728	chr2:232326368:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1382	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SIMA_AUTONOMIC_GANGLIA	1	1	0.1382	TRUE	0	0	0	7	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	SETMAR--ITPR1	9	11	SETMAR	1223	chr3:4345210:+	ITPR1	23342	chr3:4699808:+	ONLY_REF_SPLICE	YES	65	40	0.24	0.33	0.0889	0.1086	SETMAR->SET_domain_and_mariner_transposase_fusion_gene,chr3:4344988-4359251:+,ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1	SIMA_AUTONOMIC_GANGLIA	0.24	0.33	0.1975	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	VSNL1--AC011897.2	11	3	VSNL1	7070	chr2:17773503:+	AC011897.2	14109	chr2:14756552:+	ONLY_REF_SPLICE	YES	19	0	0.42	1	0.1086	0.0296	VSNL1->chr2:17720393-17838285:+,visinin_like_1,AC011897.2->chr2:14756552-14770316:+	SIMA_AUTONOMIC_GANGLIA	0.42	1	0.1382	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	HIVEP3--RP11-31I22.3	7	6	HIVEP3	2414	chr1:42384084:-	RP11-31I22.3	32885	chr17:31896354:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.0691	0.0592	HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3,RP11-31I22.3->chr17:31892783-31951141:+	SIMA_AUTONOMIC_GANGLIA	0.76	1	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ANP32B--SEPT7	7	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	SIMA_AUTONOMIC_GANGLIA	1	1	0.0691	TRUE	1	1	0	18	1	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	HIVEP3--RP11-31I22.3	5	4	HIVEP3	2414	chr1:42384084:-	RP11-31I22.3	36446	chr17:31908175:+	ONLY_REF_SPLICE	YES	4	3	0.69	0.75	0.0494	0.0395	HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3,RP11-31I22.3->chr17:31892783-31951141:+	SIMA_AUTONOMIC_GANGLIA	0.69	0.75	0.0889	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	SETMAR--ITPR1	3	11	SETMAR	1565	chr3:4345552:+	ITPR1	23342	chr3:4699808:+	ONLY_REF_SPLICE	YES	75	40	0.16	0.26	0.0296	0.1086	SETMAR->SET_domain_and_mariner_transposase_fusion_gene,chr3:4344988-4359251:+,ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1	SIMA_AUTONOMIC_GANGLIA	0.16	0.26	0.1382	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	CASC9--RP11-300E4.2	4	0	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	SIMA_AUTONOMIC_GANGLIA	1	1	0.0395	TRUE	0	23	0	19	23	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ANP32B--NCL	3	0	ANP32B	8117	chr9:100773588:+	NCL	18663	chr2:232326433:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SIMA_AUTONOMIC_GANGLIA	1	1	0.0296	TRUE	0	0	0	7	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	C6orf48--H19	3	0	C6orf48	1541	chr6:31802925:+	H19	9512	chr11:2018897:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	C6orf48->chr6:31802385-31807541:+,chromosome_6_open_reading_frame_48,H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-	SIMA_AUTONOMIC_GANGLIA	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	HIVEP3--RP11-31I22.3	3	0	HIVEP3	1119	chr1:42501478:-	RP11-31I22.3	32885	chr17:31896354:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3,RP11-31I22.3->chr17:31892783-31951141:+	SIMA_AUTONOMIC_GANGLIA	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	DIDO1--HNRNPM	2	0	DIDO1	1157	chr20:61569148:-	HNRNPM	30397	chr19:8520289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	GEN1--ODC1	2	0	GEN1	1488	chr2:17935612:+	ODC1	26869	chr2:10582300:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GEN1->GEN1,_Holliday_junction_5'_flap_endonuclease,Oncogene{Bushman},chr2:17935125-17966632:+,ODC1->chr2:10580094-10588630:-,ornithine_decarboxylase_1	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	HNRNPH1--FUS	2	0	HNRNPH1	4526	chr5:179050038:-	FUS	23431	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},HGNC_GENEFAM,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	1	1	0	2	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	LUZP1--RNF19B	2	0	LUZP1	2577	chr1:23495259:-	RNF19B	21042	chr1:33415375:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,RNF19B->chr1:33402046-33430286:-,ring_finger_protein_19B	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	RP11-412P11.1--C1QTNF7	2	0	RP11-412P11.1	3285	chr4:23004866:+	C1QTNF7	16923	chr4:15437360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	RP11-412P11.1->chr4:22999174-23058485:+,C1QTNF7->C1q_and_tumor_necrosis_factor_related_protein_7,chr4:15341442-15447790:+	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	SIN3A--HNRNPK	2	0	SIN3A	3271	chr15:75743764:-	HNRNPK	42027	chr9:86593367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	SIN3A->SIN3_transcription_regulator_family_member_A,chr15:75661720-75748183:-,HNRNPK->Oncogene{Bushman},chr9:86582998-86595569:-,heterogeneous_nuclear_ribonucleoprotein_K	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ZNF599--GRIK2	2	0	ZNF599	4117	chr19:35258221:-	GRIK2	17520	chr6:102069824:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	ZNF599->chr19:35248981-35264134:-,zinc_finger_protein_599,GRIK2->chr6:101846664-102517958:+,glutamate_ionotropic_receptor_kainate_type_subunit_2	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000099
JMSU1_URINARY_TRACT	MGST3--LRCH3	96	4	MGST3	1433	chr1:165600530:+	LRCH3	25817	chr3:197553749:+	ONLY_REF_SPLICE	YES	7	31	0.93	0.76	1.1464	0.0478	MGST3->chr1:165600098-165631033:+,microsomal_glutathione_S-transferase_3,LRCH3->chr3:197518097-197615307:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_3	JMSU1_URINARY_TRACT	0.76	0.93	1.1942	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	POLR3E--NPIPB5	64	26	POLR3E	10850	chr16:22326529:+	NPIPB5	54384	chr16:22544947:+	ONLY_REF_SPLICE	YES	25	56	0.78	0.62	0.7643	0.3105	POLR3E->chr16:22308730-22346424:+,polymerase_(RNA)_III_subunit_E,NPIPB5->chr16:22490442-22547842:+,nuclear_pore_complex_interacting_protein_family_member_B5	JMSU1_URINARY_TRACT	0.62	0.78	1.0748	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	RAP1GDS1--C4orf33	56	24	RAP1GDS1	2297	chr4:99214666:+	C4orf33	30330	chr4:130023757:+	ONLY_REF_SPLICE	YES	104	9	0.43	0.9	0.6687	0.2866	RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,C4orf33->chr4:130014472-130037795:+,chromosome_4_open_reading_frame_33	JMSU1_URINARY_TRACT	0.43	0.9	0.9553	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	ATP6V1H--RP11-431M3.2	31	13	ATP6V1H	14490	chr8:54708207:-	RP11-431M3.2	26092	chr8:34087018:-	ONLY_REF_SPLICE	YES	77	0	0.36	1	0.3702	0.1552	ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-,RP11-431M3.2->chr8:34086812-34106464:-	JMSU1_URINARY_TRACT	0.36	1	0.5254	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	UHRF2--KDM4C	14	7	UHRF2	13197	chr9:6486925:+	KDM4C	37849	chr9:6880012:+	ONLY_REF_SPLICE	YES	95	17	0.18	0.55	0.1672	0.0836	UHRF2->Oncogene{Bushman},chr9:6413151-6507054:+,ubiquitin_like_with_PHD_and_ring_finger_domains_2,KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C	JMSU1_URINARY_TRACT	0.18	0.55	0.2508	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	MGST3--LRCH3	14	6	MGST3	3510	chr1:165605059:+	LRCH3	25817	chr3:197553749:+	ONLY_REF_SPLICE	YES	15	31	0.57	0.39	0.1672	0.0717	MGST3->chr1:165600098-165631033:+,microsomal_glutathione_S-transferase_3,LRCH3->chr3:197518097-197615307:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_3	JMSU1_URINARY_TRACT	0.39	0.57	0.2389	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	RANBP9--ERVFRD-1	9	4	RANBP9	2742	chr6:13697017:-	ERVFRD-1	24449	chr6:11103995:-	INCL_NON_REF_SPLICE	YES	216	8	0.06	0.62	0.1075	0.0478	RANBP9->RAN_binding_protein_9,chr6:13621730-13711796:-,ERVFRD-1->chr6:11102722-11111965:-,endogenous_retrovirus_group_FRD_member_1	JMSU1_URINARY_TRACT	0.06	0.62	0.1553	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	LAS1L--NCL	7	0	LAS1L	13911	chrX:64737973:-	NCL	25282	chr2:232325470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0836	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	JMSU1_URINARY_TRACT	1	1	0.0836	TRUE	0	0	0	3	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	RCC1--ITGB3BP	5	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0597	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	JMSU1_URINARY_TRACT	1	1	0.0597	TRUE	0	6	0	9	2	TRUE	ACH-000753
JMSU1_URINARY_TRACT	SLCO4A1--ADRM1	4	0	SLCO4A1	1109	chr20:61273905:+	ADRM1	21543	chr20:60881253:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0478	0	GTEx_v2:{count=1;pct=0.01%;dist=Kidney_-_Cortex=1},{Klijn_CCL:Colo-Rectal=1},SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,ADRM1->adhesion_regulating_molecule_1,chr20:60877149-60883918:+	JMSU1_URINARY_TRACT	1	1	0.0478	TRUE	0	0	0	2	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	LAS1L--NCL	3	0	LAS1L	13887	chrX:64737997:-	NCL	25264	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	JMSU1_URINARY_TRACT	1	1	0.0358	TRUE	0	0	0	3	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	SF1--MT2A	3	0	SF1	3289	chr11:64543970:-	MT2A	17020	chr16:56642904:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,MT2A->chr16:56642111-56643409:+,metallothionein_2A	JMSU1_URINARY_TRACT	1	1	0.0358	TRUE	1	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	XXbac-BPG252P9.9--LMNA	3	0	XXbac-BPG252P9.9	1110	chr6:30691545:-	LMNA	21250	chr1:156106903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	XXbac-BPG252P9.9->chr6:30690882-30691654:-,LMNA->chr1:156052364-156109880:+,lamin_A/C	JMSU1_URINARY_TRACT	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	ATP6V1C1--AZIN1	2	0	ATP6V1C1	1163	chr8:104033453:+	AZIN1	29641	chr8:103855975:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx&tcga_normals:1/3694=0.03%,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	2	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	42230	chr11:35013862:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	3	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	EMC3--UNG	2	0	EMC3	2708	chr3:10028191:-	UNG	23429	chr12:109547634:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	EMC3->ER_membrane_protein_complex_subunit_3,chr3:10004221-10052800:-,UNG->chr12:109535379-109548797:+,uracil_DNA_glycosylase	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	ITPK1--MAD1L1	2	0	ITPK1	10373	chr14:93428700:-	MAD1L1	61358	chr7:1855864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	RCC1--HENMT1	2	0	RCC1	2175	chr1:28834672:+	HENMT1	20442	chr1:109202584:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HENMT1->HEN1_methyltransferase_homolog_1,chr1:109190912-109204148:-	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	1	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	SFMBT1--UBE2K	2	0	SFMBT1	1935	chr3:53079832:-	UBE2K	36241	chr4:39776454:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	SFMBT1->Scm-like_with_four_mbt_domains_1,chr3:52937588-53080766:-,UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	TCF12--POLR3G	2	0	TCF12	1284	chr15:57211104:+	POLR3G	49766	chr5:89791494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,POLR3G->chr5:89767565-89810370:+,polymerase_(RNA)_III_subunit_G	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	TFRC--FAM208A	2	0	TFRC	10623	chr3:195792314:-	FAM208A	29248	chr3:56707753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,FAM208A->chr3:56654161-56717265:-,family_with_sequence_similarity_208_member_A	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	ZNF672--NPAT	2	0	ZNF672	5480	chr1:249139861:+	NPAT	23126	chr11:108047817:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	ZNF672->chr1:249132409-249143716:+,zinc_finger_protein_672,NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	AP003900.6--AC011718.2	1	3	AP003900.6	2187	chr21:11172043:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	NO	2	6	0.67	0.4	0.0119	0.0358	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	JMSU1_URINARY_TRACT	0.4	0.67	0.0477	TRUE	0	0	0	4	0	TRUE	ACH-000753
AN3CA_ENDOMETRIUM	CREB3L2--PTN	220	110	CREB3L2	1464	chr7:137686350:-	PTN	27504	chr7:136939714:-	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	2.3309	1.1654	CREB3L2->Oncogene{Bushman},cAMP_responsive_element_binding_protein_3-like_2,chr7:137559725-137686813:-,PTN->Oncogene{Bushman},chr7:136912088-137028611:-,pleiotrophin	AN3CA_ENDOMETRIUM	0.99	1	3.4963	TRUE	1	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	CREB3L2--PTN	33	111	CREB3L2	1464	chr7:137686350:-	PTN	27497	chr7:136939721:-	ONLY_REF_SPLICE	YES	0	2	1	0.99	0.3496	1.176	CREB3L2->Oncogene{Bushman},cAMP_responsive_element_binding_protein_3-like_2,chr7:137559725-137686813:-,PTN->Oncogene{Bushman},chr7:136912088-137028611:-,pleiotrophin	AN3CA_ENDOMETRIUM	0.99	1	1.5256	TRUE	1	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	VGLL4--PRKG1	42	29	VGLL4	9312	chr3:11684911:-	PRKG1	33115	chr10:53227483:+	ONLY_REF_SPLICE	YES	28	12	0.72	0.86	0.445	0.3073	{Klijn_CCL:Uterus=1},VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,PRKG1->chr10:52750945-54058110:+,protein_kinase,_cGMP-dependent,_type_I	AN3CA_ENDOMETRIUM	0.72	0.86	0.7523	TRUE	0	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	GYS1--RP11-254F7.1	20	14	GYS1	10558	chr19:49477470:-	RP11-254F7.1	17620	chr2:10161867:+	INCL_NON_REF_SPLICE	YES	78	3	0.3	0.92	0.2119	0.1483	GYS1->chr19:49471382-49496567:-,glycogen_synthase_1,RP11-254F7.1->chr2:10161705-10162952:+	AN3CA_ENDOMETRIUM	0.3	0.92	0.3602	TRUE	0	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	VGLL4--PRKG1	1	10	VGLL4	9312	chr3:11684911:-	PRKG1	34229	chr10:53564345:+	ONLY_REF_SPLICE	YES	28	22	0.28	0.33	0.0106	0.1059	{Klijn_CCL:Uterus=1},VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,PRKG1->chr10:52750945-54058110:+,protein_kinase,_cGMP-dependent,_type_I	AN3CA_ENDOMETRIUM	0.28	0.33	0.1165	TRUE	0	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	CD320--ARL5A	2	0	CD320	3096	chr19:8369915:-	ARL5A	15313	chr2:152663486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	CD320->CD320_molecule,chr19:8367011-8373240:-,ARL5A->ADP_ribosylation_factor_like_GTPase_5A,chr2:152645498-152685006:-	AN3CA_ENDOMETRIUM	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	DDHD1--CBWD2	2	0	DDHD1	4498	chr14:53570401:-	CBWD2	43346	chr2:114228610:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	DDHD1->DDHD_domain_containing_1,chr14:53510686-53620000:-,CBWD2->COBW_domain_containing_2,chr2:114195268-114253766:+	AN3CA_ENDOMETRIUM	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	VGLL4--PRKG1	1	1	VGLL4	4478	chr3:11744445:-	PRKG1	33115	chr10:53227483:+	ONLY_REF_SPLICE	YES	3	12	0.4	0.14	0.0106	0.0106	{Klijn_CCL:Uterus=1},VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,PRKG1->chr10:52750945-54058110:+,protein_kinase,_cGMP-dependent,_type_I	AN3CA_ENDOMETRIUM	0.14	0.4	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000940
NCIH522_LUNG	NRDE2--CALM1	32	25	NRDE2	16151	chr14:90752698:-	CALM1	26763	chr14:90866409:+	ONLY_REF_SPLICE	YES	22	1097	0.72	0.05	0.3601	0.2814	LOCAL_INVERSION:-:+:[64365],NRDE2->NRDE-2,_necessary_for_RNA_interference,_domain_containing,chr14:90742580-90798481:-,CALM1->calmodulin_1_(phosphorylase_kinase,_delta),chr14:90862846-90874605:+	NCIH522_LUNG	0.05	0.72	0.6415	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	R3HDM2--ARHGAP9	35	5	R3HDM2	1286	chr12:57824503:-	ARHGAP9	34906	chr12:57874617:-	ONLY_REF_SPLICE	YES	0	2	1	0.95	0.3939	0.0563	LOCAL_REARRANGEMENT:-:[41250],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	NCIH522_LUNG	0.95	1	0.4502	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	PXN--MSI1	30	12	PXN	1155	chr12:120703420:-	MSI1	33793	chr12:120785317:-	ONLY_REF_SPLICE	YES	16	20	0.72	0.68	0.3376	0.1351	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[75559],PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	NCIH522_LUNG	0.68	0.72	0.4727	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	ZNF217--BCAS1	28	7	ZNF217	3627	chr20:52214170:-	BCAS1	31307	chr20:52570234:-	ONLY_REF_SPLICE	YES	37	2	0.49	0.95	0.3151	0.0788	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	NCIH522_LUNG	0.49	0.95	0.3939	TRUE	0	0	0	2	0	TRUE	ACH-000343
NCIH522_LUNG	C1orf52--DDAH1	20	14	C1orf52	2149	chr1:85724207:-	DDAH1	22026	chr1:85824530:-	ONLY_REF_SPLICE	YES	78	142	0.3	0.19	0.2251	0.1576	LOCAL_REARRANGEMENT:-:[58809],C1orf52->chr1:85715639-85725355:-,chromosome_1_open_reading_frame_52,DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1	NCIH522_LUNG	0.19	0.3	0.3827	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	HSF2BP--AP001610.5	13	19	HSF2BP	6915	chr21:45050203:-	AP001610.5	13905	chr21:42814673:-	INCL_NON_REF_SPLICE	YES	32	0	0.5	1	0.1463	0.2138	HSF2BP->chr21:44949072-45079374:-,heat_shock_transcription_factor_2_binding_protein,AP001610.5->chr21:42813321-42814669:-	NCIH522_LUNG	0.5	1	0.3601	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	ARHGAP10--TMEM184C	16	6	ARHGAP10	1393	chr4:148653606:+	TMEM184C	37262	chr4:148544985:+	ONLY_REF_SPLICE	YES	7	73	0.76	0.23	0.1801	0.0675	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:+:[60019],ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,TMEM184C->chr4:148538534-148593195:+,transmembrane_protein_184C	NCIH522_LUNG	0.23	0.76	0.2476	TRUE	0	1	0	2	1	TRUE	ACH-000343
NCIH522_LUNG	ZNF217--BCAS1	9	8	ZNF217	4711	chr20:52210295:-	BCAS1	31307	chr20:52570234:-	ONLY_REF_SPLICE	YES	39	2	0.3	0.89	0.1013	0.09	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	NCIH522_LUNG	0.3	0.89	0.1913	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	R3HDM2--ARHGAP9	9	3	R3HDM2	1286	chr12:57824503:-	ARHGAP9	36316	chr12:57873207:-	ONLY_REF_SPLICE	YES	0	16	1	0.43	0.1013	0.0338	LOCAL_REARRANGEMENT:-:[41250],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	NCIH522_LUNG	0.43	1	0.1351	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	HSF2BP--AP001610.5	5	14	HSF2BP	6879	chr21:45050239:-	AP001610.5	13905	chr21:42814673:-	INCL_NON_REF_SPLICE	YES	31	0	0.38	1	0.0563	0.1576	HSF2BP->chr21:44949072-45079374:-,heat_shock_transcription_factor_2_binding_protein,AP001610.5->chr21:42813321-42814669:-	NCIH522_LUNG	0.38	1	0.2139	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	ZNF217--BCAS1	6	8	ZNF217	4711	chr20:52210295:-	BCAS1	30241	chr20:52574036:-	ONLY_REF_SPLICE	YES	39	2	0.26	0.88	0.0675	0.09	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	NCIH522_LUNG	0.26	0.88	0.1575	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	WWC2--TENM3	7	2	WWC2	1330	chr4:184020775:+	TENM3	43811	chr4:183522077:+	ONLY_REF_SPLICE	YES	23	163	0.28	0.05	0.0788	0.0225	WWC2->WW_and_C2_domain_containing_2,chr4:184020446-184241930:+,TENM3->chr4:183065140-183724177:+,teneurin_transmembrane_protein_3	NCIH522_LUNG	0.05	0.28	0.1013	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	LMNB2--RP11-180M15.3	7	0	LMNB2	2464	chr19:2444402:-	RP11-180M15.3	17495	chr12:12837839:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0788	0	LMNB2->chr19:2427636-2456994:-,lamin_B2,RP11-180M15.3->chr12:12821916-12838009:+	NCIH522_LUNG	1	1	0.0788	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	HSF2BP--AP001610.5	3	15	HSF2BP	6915	chr21:45050203:-	AP001610.5	14781	chr21:42813797:-	ONLY_REF_SPLICE	YES	32	0	0.36	1	0.0338	0.1688	HSF2BP->chr21:44949072-45079374:-,heat_shock_transcription_factor_2_binding_protein,AP001610.5->chr21:42813321-42814669:-	NCIH522_LUNG	0.36	1	0.2026	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	ZNF217--BCAS1	3	7	ZNF217	3627	chr20:52214170:-	BCAS1	30241	chr20:52574036:-	ONLY_REF_SPLICE	YES	37	2	0.21	0.83	0.0338	0.0788	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	NCIH522_LUNG	0.21	0.83	0.1126	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	HSF2BP--AP001610.5	3	4	HSF2BP	5773	chr21:45053153:-	AP001610.5	13905	chr21:42814673:-	INCL_NON_REF_SPLICE	YES	25	0	0.22	1	0.0338	0.045	HSF2BP->chr21:44949072-45079374:-,heat_shock_transcription_factor_2_binding_protein,AP001610.5->chr21:42813321-42814669:-	NCIH522_LUNG	0.22	1	0.0788	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	FGF2--BBS12	3	0	FGF2	1645	chr4:123748507:+	BBS12	15147	chr4:123663038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[81765],FGF2->Oncogene{Bushman},chr4:123747863-123819391:+,fibroblast_growth_factor_2,BBS12->Bardet-Biedl_syndrome_12,chr4:123653857-123666098:+	NCIH522_LUNG	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	HMGA2--MSRB3	3	0	HMGA2	5315	chr12:66232349:+	MSRB3	38002	chr12:65856935:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	NCIH522_LUNG	1	1	0.0338	TRUE	0	3	0	1	3	TRUE	ACH-000343
NCIH522_LUNG	HSF2BP--AP001610.5	2	4	HSF2BP	5773	chr21:45053153:-	AP001610.5	14781	chr21:42813797:-	ONLY_REF_SPLICE	YES	25	0	0.19	1	0.0225	0.045	HSF2BP->chr21:44949072-45079374:-,heat_shock_transcription_factor_2_binding_protein,AP001610.5->chr21:42813321-42814669:-	NCIH522_LUNG	0.19	1	0.0675	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	LINC00478--LINC00945	2	4	LINC00478	7469	chr21:17764005:+	LINC00945	26743	chr21:34435098:+	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0225	0.045	LINC00478->chr21:17442842-17999716:+,LINC00945->chr21:34430135-34437289:+,long_intergenic_non-protein_coding_RNA_945	NCIH522_LUNG	0.38	1	0.0675	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	FAM66B--RP11-89K10.1	2	1	FAM66B	2608	chr8:7206605:-	RP11-89K10.1	22172	chr8:127725531:+	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0225	0.0113	FAM66B->chr8:7159133-7212876:-,family_with_sequence_similarity_66_member_B,RP11-89K10.1->chr8:127570120-127725660:+	NCIH522_LUNG	0.27	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	ASAP2--STAMBP	2	0	ASAP2	3685	chr2:9437574:+	STAMBP	35264	chr2:74056532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,STAMBP->STAM_binding_protein,chr2:74056086-74100786:+	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	EEF2--IRF3	2	0	EEF2	7141	chr19:3979327:-	IRF3	15620	chr19:50166771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,IRF3->chr19:50162826-50169132:-,interferon_regulatory_factor_3	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	FUBP1--IVNS1ABP	2	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH522_LUNG	1	1	0.0225	TRUE	1	4	0	16	0	TRUE	ACH-000343
NCIH522_LUNG	LINC00478--LINC00945	1	4	LINC00478	8883	chr21:17792061:+	LINC00945	26743	chr21:34435098:+	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0113	0.045	LINC00478->chr21:17442842-17999716:+,LINC00945->chr21:34430135-34437289:+,long_intergenic_non-protein_coding_RNA_945	NCIH522_LUNG	0.29	1	0.0563	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	METTL16--PYGL	2	0	METTL16	11438	chr17:2341403:-	PYGL	32971	chr14:51387785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	METTL16->chr17:2308856-2415185:-,methyltransferase_like_16,PYGL->chr14:51324609-51411454:-,phosphorylase,_glycogen,_liver	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	PDGFC--GRIA2	2	0	PDGFC	1609	chr4:157891938:-	GRIA2	28358	chr4:158224704:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C,GRIA2->chr4:158125334-158287227:+,glutamate_ionotropic_receptor_AMPA_type_subunit_2	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	POLR2D--SAP130	2	0	POLR2D	1130	chr2:128615602:-	SAP130	25852	chr2:128712918:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_REARRANGEMENT:-:[83060],POLR2D->chr2:128603840-128615731:-,polymerase_(RNA)_II_subunit_D,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	RPS6KB1--VMP1	2	0	RPS6KB1	15604	chr17:58018304:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	3	0	TRUE	ACH-000343
NCIH522_LUNG	RPS6KB1--VMP1	2	0	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH522_LUNG	1	1	0.0225	TRUE	0	9	0	10	6	TRUE	ACH-000343
NCIH522_LUNG	TRIT1--PPIE	2	0	TRIT1	1194	chr1:40348990:-	PPIE	34056	chr1:40229361:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	4	0	TRUE	ACH-000343
NCIH522_LUNG	R3HDM2--ARHGAP9	1	3	R3HDM2	1286	chr12:57824503:-	ARHGAP9	35952	chr12:57873571:-	ONLY_REF_SPLICE	YES	0	3	1	0.57	0.0113	0.0338	LOCAL_REARRANGEMENT:-:[41250],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	NCIH522_LUNG	0.57	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	DPYD--MIR137HG	1	1	DPYD	4686	chr1:98293670:-	MIR137HG	41427	chr1:98455125:-	ONLY_REF_SPLICE	YES	52	0	0.04	1	0.0113	0.0113	LOCAL_REARRANGEMENT:-:[66951],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-	NCIH522_LUNG	0.04	1	0.0226	TRUE	0	0	0	2	0	TRUE	ACH-000343
NCIH522_LUNG	GCA--IFIH1	1	1	GCA	1556	chr2:163175905:+	IFIH1	21640	chr2:163144865:-	ONLY_REF_SPLICE	NO	0	11	1	0.15	0.0113	0.0113	LOCAL_INVERSION:+:-:[137],GCA->chr2:163175350-163228105:+,grancalcin,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	NCIH522_LUNG	0.15	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000343
OE21_OESOPHAGUS	DNAJC13--UBA5	102	6	DNAJC13	1235	chr3:132136604:+	UBA5	62414	chr3:132384667:+	ONLY_REF_SPLICE	YES	2	30	0.98	0.78	1.0351	0.0609	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,UBA5->chr3:132373290-132396941:+,ubiquitin_like_modifier_activating_enzyme_5	OE21_OESOPHAGUS	0.78	0.98	1.096	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	ZCWPW1--MYH16	7	1	ZCWPW1	2532	chr7:100022653:-	MYH16	28431	chr7:98853205:+	ONLY_REF_SPLICE	YES	34	0	0.19	1	0.071	0.0101	ZCWPW1->chr7:99998449-100026615:-,zinc_finger_CW-type_and_PWWP_domain_containing_1,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	OE21_OESOPHAGUS	0.19	1	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	FADS2--FOLR3	5	2	FADS2	1049	chr11:61560500:+	FOLR3	29175	chr11:71846993:+	ONLY_REF_SPLICE	YES	0	11	1	0.39	0.0507	0.0203	FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,FOLR3->chr11:71825915-71850936:+,folate_receptor_3_(gamma)	OE21_OESOPHAGUS	0.39	1	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	MROH1--PRDX2	3	0	MROH1	18307	chr8:145278133:+	PRDX2	44575	chr19:12907980:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,PRDX2->chr19:12907634-12912694:-,peroxiredoxin_2	OE21_OESOPHAGUS	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	TRPC4AP--CTD-2315E11.1	3	0	TRPC4AP	4562	chr20:33645317:-	CTD-2315E11.1	26721	chr15:90676629:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,CTD-2315E11.1->chr15:90645881-90676674:+	OE21_OESOPHAGUS	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	DNAJC13--UBA5	2	1	DNAJC13	1235	chr3:132136604:+	UBA5	65303	chr3:132387662:+	ONLY_REF_SPLICE	YES	2	62	0.6	0.05	0.0203	0.0101	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,UBA5->chr3:132373290-132396941:+,ubiquitin_like_modifier_activating_enzyme_5	OE21_OESOPHAGUS	0.05	0.6	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	C10orf88--WDR11	2	0	C10orf88	3450	chr10:124711470:-	WDR11	16180	chr10:122618155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	C10orf88->chr10:124690419-124713919:-,chromosome_10_open_reading_frame_88,WDR11->Oncogene{Bushman},WD_repeat_domain_11,chr10:122610687-122669036:+	OE21_OESOPHAGUS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	DNAJC13--UBA5	1	4	DNAJC13	1235	chr3:132136604:+	UBA5	62575	chr3:132384828:+	ONLY_REF_SPLICE	YES	2	39	0.71	0.11	0.0101	0.0406	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,UBA5->chr3:132373290-132396941:+,ubiquitin_like_modifier_activating_enzyme_5	OE21_OESOPHAGUS	0.11	0.71	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	KCNN4--IQCG	2	0	KCNN4	1555	chr19:44284855:-	IQCG	29696	chr3:197619630:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	KCNN4->chr19:44270685-44285409:-,potassium_calcium-activated_channel_subfamily_N_member_4,IQCG->IQ_motif_containing_G,chr3:197615946-197687013:-	OE21_OESOPHAGUS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	KHDC1--NEMF	2	0	KHDC1	1814	chr6:74019275:-	NEMF	39517	chr14:50256061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	KHDC1->KH_homology_domain_containing_1,chr6:73951037-74020088:-,NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor	OE21_OESOPHAGUS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	MSRB2--SERPINB1	2	0	MSRB2	3399	chr10:23399247:+	SERPINB1	14069	chr6:2838233:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	MSRB2->chr10:23384435-23410942:+,methionine_sulfoxide_reductase_B2,SERPINB1->Oncogene{Bushman},chr6:2832566-2842240:-,serpin_family_B_member_1	OE21_OESOPHAGUS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	RP11-286N22.8--KIAA1432	2	0	RP11-286N22.8	4750	chr11:61213703:+	KIAA1432	29295	chr9:5754841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RP11-286N22.8->chr11:61196692-61253294:+,KIAA1432->chr9:5629025-5776557:+	OE21_OESOPHAGUS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	SNHG6--CSPP1	2	0	SNHG6	1962	chr8:67837672:-	CSPP1	38622	chr8:68087531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	SNHG6->chr8:67833919-67838633:-,small_nucleolar_RNA_host_gene_6,CSPP1->centrosome_and_spindle_pole_associated_protein_1,chr8:67974661-68108498:+	OE21_OESOPHAGUS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	FAM35A--PRR4	1	1	FAM35A	11831	chr10:88946957:+	PRR4	33400	chr12:11001006:-	ONLY_REF_SPLICE	YES	45	9	0.04	0.18	0.0101	0.0101	FAM35A->chr10:88853918-88951225:+,family_with_sequence_similarity_35_member_A,PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal)	OE21_OESOPHAGUS	0.04	0.18	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000544
DKMG_CENTRAL_NERVOUS_SYSTEM	SEC61G--RP11-436F9.1	48	69	SEC61G	4140	chr7:54823472:-	RP11-436F9.1	10421	chr7:54414987:+	ONLY_REF_SPLICE	YES	2275	0	0.05	1	0.6678	0.9599	SEC61G->Sec61_translocon_gamma_subunit,chr7:54819943-54827667:-,RP11-436F9.1->chr7:54398390-54417542:+	DKMG_CENTRAL_NERVOUS_SYSTEM	0.05	1	1.6277	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	ZNF33A--LINC00839	20	2	ZNF33A	3703	chr10:38306314:+	LINC00839	18319	chr10:42982427:+	ONLY_REF_SPLICE	YES	11	0	0.67	1	0.2782	0.0278	ZNF33A->chr10:38299578-38354016:+,zinc_finger_protein_33A,LINC00839->chr10:42970991-42990784:+,long_intergenic_non-protein_coding_RNA_839	DKMG_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.306	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	CALR--SHC1	5	0	CALR	4859	chr19:13054575:+	SHC1	14801	chr1:154938961:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0	CALR->calreticulin,chr19:13049392-13055303:+,SHC1->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_transforming_protein_1,chr1:154934774-154946871:-	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	ERCC1--PAMR1	5	0	ERCC1	2178	chr19:45953899:-	PAMR1	29828	chr11:35489656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0696	0	ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	NUP107--IL22	4	2	NUP107	5788	chr12:69085892:+	IL22	31718	chr12:68647274:-	ONLY_REF_SPLICE	YES	28	2	0.18	0.75	0.0556	0.0278	NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa,IL22->Oncogene{Bushman},chr12:68642022-68647387:-,interleukin_22	DKMG_CENTRAL_NERVOUS_SYSTEM	0.18	0.75	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	BRIP1--ORMDL3	3	3	BRIP1	22032	chr17:59793312:-	ORMDL3	35392	chr17:38080478:-	ONLY_REF_SPLICE	YES	2	42	0.75	0.12	0.0417	0.0417	BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-,ORMDL3->ORMDL_sphingolipid_biosynthesis_regulator_3,chr17:38077294-38083854:-	DKMG_CENTRAL_NERVOUS_SYSTEM	0.12	0.75	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	FLYWCH1--RP11-196G11.1	2	0	FLYWCH1	4540	chr16:2965477:+	RP11-196G11.1	27837	chr16:31099147:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	FLYWCH1->FLYWCH-type_zinc_finger_1,chr16:2961938-3001209:+,RP11-196G11.1->chr16:31094760-31106277:-	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	MDM2--NUP107	2	0	MDM2	3198	chr12:69207408:+	NUP107	31532	chr12:69103018:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	LOCAL_REARRANGEMENT:+:[65171],MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	STIM1--RHOG	2	0	STIM1	2883	chr11:3877639:+	RHOG	36330	chr11:3849436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[13544],STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1,RHOG->Oncogene{Bushman},chr11:3848208-3862213:-,ras_homolog_family_member_G	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	WIPF1--PMEPA1	2	0	WIPF1	1143	chr2:175547502:-	PMEPA1	35813	chr20:56234753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	WIPF1->WAS/WASL_interacting_protein_family_member_1,chr2:175424300-175547644:-,PMEPA1->Oncogene{Bushman},chr20:56223448-56286592:-,prostate_transmembrane_protein,_androgen_induced_1	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	YIPF6--RNF41	2	0	YIPF6	1835	chrX:67718999:+	RNF41	26236	chr12:56602082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,RNF41->chr12:56598285-56615717:-,ring_finger_protein_41	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	BMS1P5--CEP164P1	1	1	BMS1P5	7859	chr10:48941194:-	CEP164P1	40425	chr10:45511616:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0139	0.0139	BMS1P5->BMS1,_ribosome_biogenesis_factor_pseudogene_5,chr10:48901102-48950972:-,CEP164P1->centrosomal_protein_164_pseudogene_1,chr10:45497670-45642669:-	DKMG_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	BRWD1--CHMP1A	1	1	BRWD1	4942	chr21:40670358:-	CHMP1A	61543	chr16:89713739:-	ONLY_REF_SPLICE	NO	9	91	0.18	0.02	0.0139	0.0139	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Heart_-_Left_Ventricle=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	DKMG_CENTRAL_NERVOUS_SYSTEM	0.02	0.18	0.0278	TRUE	1	6	1	2	2	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	ERCC1--PAMR1	1	1	ERCC1	3250	chr19:45952431:-	PAMR1	29828	chr11:35489656:-	ONLY_REF_SPLICE	NO	10	40	0.17	0.05	0.0139	0.0139	ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	DKMG_CENTRAL_NERVOUS_SYSTEM	0.05	0.17	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	SGCG--WASF3	1	1	SGCG	7809	chr13:23853617:+	WASF3	15922	chr13:27187098:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0.0139	SGCG->chr13:23755091-23899304:+,sarcoglycan_gamma,WASF3->WAS_protein_family_member_3,chr13:27131840-27263085:+	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
SNU423_LIVER	ZNF486--MYO1F	3	2	ZNF486	1133	chr19:20278169:+	MYO1F	30294	chr19:8595457:-	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.039	0.026	ZNF486->chr19:20278037-20311299:+,zinc_finger_protein_486,MYO1F->chr19:8585674-8642461:-,myosin_IF	SNU423_LIVER	0.25	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	PABPC4--LDHA	3	0	PABPC4	1640	chr1:40041823:-	LDHA	16513	chr11:18416110:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	SNU423_LIVER	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	APPBP2--VPS35	2	0	APPBP2	1426	chr17:58603155:-	VPS35	29750	chr16:46717518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-,VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	DCBLD2--GNAS	2	0	DCBLD2	6582	chr3:98568305:-	GNAS	45665	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	KIF4A--HNRNPH2	2	0	KIF4A	1777	chrX:69510655:+	HNRNPH2	33068	chrX:100666924:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	KIF4A->chrX:69509879-69640682:+,kinesin_family_member_4A,HNRNPH2->chrX:100663283-100669121:+,heterogeneous_nuclear_ribonucleoprotein_H2_(H')	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	NCK1--STAG1	2	0	NCK1	1112	chr3:136581161:+	STAG1	36338	chr3:136141886:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	RPL31--FRYL	2	0	RPL31	5008	chr2:101622533:+	FRYL	24301	chr4:48636507:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RPL31->chr2:101618177-101640494:+,ribosomal_protein_L31,FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	SMARCA4--BSN	2	0	SMARCA4	1253	chr19:11071850:+	BSN	48039	chr3:49662408:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,BSN->bassoon_presynaptic_cytomatrix_protein,chr3:49591922-49708978:+	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	XRN2--OVOL2	2	0	XRN2	1170	chr20:21284111:+	OVOL2	37027	chr20:17937681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
HCC33_LUNG	RLF--UBE2J2	1739	2326	RLF	1264	chr1:40627308:+	UBE2J2	20408	chr1:1203372:-	ONLY_REF_SPLICE	YES	641	25	0.86	0.99	21.2137	28.3744	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,UBE2J2->chr1:1189289-1209265:-,ubiquitin_conjugating_enzyme_E2_J2	HCC33_LUNG	0.86	0.99	49.5881	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	RLF--UBE2J2	577	1412	RLF	1264	chr1:40627308:+	UBE2J2	24092	chr1:1198766:-	ONLY_REF_SPLICE	YES	641	623	0.76	0.76	7.0387	17.2247	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,UBE2J2->chr1:1189289-1209265:-,ubiquitin_conjugating_enzyme_E2_J2	HCC33_LUNG	0.76	0.76	24.2634	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	RLF--FAM132A	768	587	RLF	1264	chr1:40627308:+	FAM132A	18683	chr1:1179877:-	ONLY_REF_SPLICE	YES	641	149	0.68	0.9	9.3687	7.1607	{Klijn_CCL:Lung=1},RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,FAM132A->chr1:1177826-1182102:-,family_with_sequence_similarity_132_member_A	HCC33_LUNG	0.68	0.9	16.5294	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	RLF--UBE2J2	428	1044	RLF	1264	chr1:40627308:+	UBE2J2	26309	chr1:1192690:-	ONLY_REF_SPLICE	YES	641	914	0.7	0.62	5.2211	12.7355	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,UBE2J2->chr1:1189289-1209265:-,ubiquitin_conjugating_enzyme_E2_J2	HCC33_LUNG	0.62	0.7	17.9566	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	UBE4B--TBCB	353	301	UBE4B	1863	chr1:10093752:+	TBCB	45008	chr19:36611612:+	ONLY_REF_SPLICE	YES	67	356	0.91	0.65	4.3062	3.6718	{Klijn_CCL:Lung=1},UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B	HCC33_LUNG	0.65	0.91	7.978	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	RLF--UBE2J2	87	544	RLF	1264	chr1:40627308:+	UBE2J2	26489	chr1:1192510:-	ONLY_REF_SPLICE	YES	641	2044	0.5	0.24	1.0613	6.6361	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,UBE2J2->chr1:1189289-1209265:-,ubiquitin_conjugating_enzyme_E2_J2	HCC33_LUNG	0.24	0.5	7.6974	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	TRIT1--EP400	142	116	TRIT1	13488	chr1:40306807:-	EP400	17647	chr12:132445130:+	INCL_NON_REF_SPLICE	YES	7	0	0.97	1	1.7322	1.4151	{Klijn_CCL:Lung=1},TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+	HCC33_LUNG	0.97	1	3.1473	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	UBE4B--TBCB	3	304	UBE4B	1863	chr1:10093752:+	TBCB	44871	chr19:36611475:+	INCL_NON_REF_SPLICE	YES	67	393	0.82	0.44	0.0366	3.7084	{Klijn_CCL:Lung=1},UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B	HCC33_LUNG	0.44	0.82	3.745	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	PCSK2--SLC25A29	39	45	PCSK2	10904	chr20:17417528:+	SLC25A29	26615	chr14:100765222:-	ONLY_REF_SPLICE	YES	144	136	0.37	0.38	0.4758	0.5489	PCSK2->chr20:17206752-17465223:+,proprotein_convertase_subtilisin/kexin_type_2,SLC25A29->chr14:100757448-100772884:-,solute_carrier_family_25_member_29	HCC33_LUNG	0.37	0.38	1.0247	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	RLF--FAM132A	4	180	RLF	1264	chr1:40627308:+	FAM132A	18905	chr1:1179655:-	ONLY_REF_SPLICE	YES	641	198	0.22	0.48	0.0488	2.1958	{Klijn_CCL:Lung=1},RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,FAM132A->chr1:1177826-1182102:-,family_with_sequence_similarity_132_member_A	HCC33_LUNG	0.22	0.48	2.2446	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	MIR3654--SZT2	31	34	MIR3654	2319	chr11:62356503:-	SZT2	19684	chr1:43868848:+	ONLY_REF_SPLICE	YES	152	1	0.3	0.98	0.3782	0.4148	MIR3654->chr11:62327075-62359003:-,microRNA_3654,SZT2->chr1:43855553-43918321:+,seizure_threshold_2_homolog_(mouse)	HCC33_LUNG	0.3	0.98	0.793	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	SUV420H1--CATSPER1	24	27	SUV420H1	3465	chr11:67957384:-	CATSPER1	28969	chr11:65786373:-	ONLY_REF_SPLICE	YES	163	0	0.24	1	0.2928	0.3294	{Klijn_CCL:Lung=1},SUV420H1->chr11:67922330-67981295:-,CATSPER1->cation_channel_sperm_associated_1,chr11:65784223-65793988:-	HCC33_LUNG	0.24	1	0.6222	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	RP11-499F3.2--TYW1	19	5	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	114	1	0.17	0.2318	0.061	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	HCC33_LUNG	0.17	1	0.2928	TRUE	1	3	0	7	3	TRUE	ACH-000515
HCC33_LUNG	FBRSL1--GALNT9	8	9	FBRSL1	9322	chr12:133102409:+	GALNT9	29099	chr12:132863016:-	ONLY_REF_SPLICE	YES	314	0	0.05	1	0.0976	0.1098	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9	HCC33_LUNG	0.05	1	0.2074	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	SUV420H1--CATSPER1	7	9	SUV420H1	1352	chr11:67980944:-	CATSPER1	28969	chr11:65786373:-	ONLY_REF_SPLICE	YES	26	0	0.38	1	0.0854	0.1098	{Klijn_CCL:Lung=1},SUV420H1->chr11:67922330-67981295:-,CATSPER1->cation_channel_sperm_associated_1,chr11:65784223-65793988:-	HCC33_LUNG	0.38	1	0.1952	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	MTA2--C12orf76	5	7	MTA2	2675	chr11:62367638:-	C12orf76	15099	chr12:110503838:-	ONLY_REF_SPLICE	YES	298	0	0.04	1	0.061	0.0854	MTA2->chr11:62360686-62369312:-,metastasis_associated_1_family_member_2,C12orf76->chr12:110465872-110511491:-,chromosome_12_open_reading_frame_76	HCC33_LUNG	0.04	1	0.1464	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	UBE4B--TBCB	4	11	UBE4B	1863	chr1:10093752:+	TBCB	47472	chr19:36616353:+	ONLY_REF_SPLICE	YES	67	312	0.18	0.05	0.0488	0.1342	{Klijn_CCL:Lung=1},UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B	HCC33_LUNG	0.05	0.18	0.183	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	PUM1--RP11-867G23.3	5	5	PUM1	6137	chr1:31501643:-	RP11-867G23.3	34479	chr11:66040063:-	ONLY_REF_SPLICE	YES	153	0	0.06	1	0.061	0.061	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,RP11-867G23.3->chr11:66037303-66045996:-	HCC33_LUNG	0.06	1	0.122	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	ZNF382--UBE4B	5	2	ZNF382	6105	chr19:37101644:+	UBE4B	14437	chr1:10132086:+	ONLY_REF_SPLICE	YES	4	63	0.64	0.1	0.061	0.0244	ZNF382->chr19:37095719-37119499:+,zinc_finger_protein_382,UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B	HCC33_LUNG	0.1	0.64	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	SUV420H1--CATSPER1	3	9	SUV420H1	1691	chr11:67980605:-	CATSPER1	28969	chr11:65786373:-	ONLY_REF_SPLICE	YES	45	0	0.21	1	0.0366	0.1098	{Klijn_CCL:Lung=1},SUV420H1->chr11:67922330-67981295:-,CATSPER1->cation_channel_sperm_associated_1,chr11:65784223-65793988:-	HCC33_LUNG	0.21	1	0.1464	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	AL132709.5--CAAP1	2	0	AL132709.5	8473	chr14:101415933:+	CAAP1	22122	chr9:26887511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	AL132709.5->chr14:101403738-101426536:+,CAAP1->caspase_activity_and_apoptosis_inhibitor_1,chr9:26840683-26892802:-	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	CDK5RAP2--RABGAP1	2	0	CDK5RAP2	25976	chr9:123215734:-	RABGAP1	69187	chr9:125827627:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,RABGAP1->RAB_GTPase_activating_protein_1,chr9:125703112-125867145:+	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	CDYL2--GOLGA8A	2	0	CDYL2	1180	chr16:80838047:-	GOLGA8A	35353	chr15:34699936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	CHFR--ETV1	2	0	CHFR	2239	chr12:133522207:-	ETV1	45179	chr7:13978871:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,ETV1->ArcherDX_panel,ETS_variant_1,FoundationOne_panel,Oncogene{Bushman},chr7:13930853-14031050:-	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	PHF6--ZDHHC13	2	0	PHF6	12243	chrX:133559360:+	ZDHHC13	21423	chr11:19164525:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	PHF6->Oncogene{Bushman},PHD_finger_protein_6,chrX:133507283-133562820:+,ZDHHC13->chr11:19138646-19197969:+,zinc_finger_DHHC-type_containing_13	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	TRA2B--XXYLT1	2	0	TRA2B	1312	chr3:185655613:-	XXYLT1	35322	chr3:194877310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),XXYLT1->Oncogene{Bushman},chr3:194789008-194991896:-,xyloside_xylosyltransferase_1	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	U2SURP--YWHAQ	2	0	U2SURP	4885	chr3:142720515:+	YWHAQ	44750	chr2:9731644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
NCIH2029_LUNG	GPC6--MYO16	122	115	GPC6	4326	chr13:94482798:+	MYO16	33614	chr13:109535407:+	ONLY_REF_SPLICE	YES	39	0	0.86	1	1.3012	1.2266	GPC6->chr13:93879095-95059655:+,glypican_6,MYO16->chr13:109248500-109860355:+,myosin_XVI	NCIH2029_LUNG	0.86	1	2.5278	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	DSE--NT5DC1	34	7	DSE	2645	chr6:116580130:+	NT5DC1	39937	chr6:116565072:+	ONLY_REF_SPLICE	YES	50	39	0.45	0.51	0.3626	0.0747	LOCAL_REARRANGEMENT:+:[4676],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	NCIH2029_LUNG	0.45	0.51	0.4373	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	BAZ1A--AKAP6	23	13	BAZ1A	7988	chr14:35280141:-	AKAP6	63539	chr14:33242884:+	ONLY_REF_SPLICE	YES	128	69	0.22	0.34	0.2453	0.1387	BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH2029_LUNG	0.22	0.34	0.384	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	STRN3--STXBP6	22	12	STRN3	1498	chr14:31495110:-	STXBP6	30950	chr14:25444056:-	ONLY_REF_SPLICE	YES	60	12	0.36	0.74	0.2346	0.128	STRN3->chr14:31363005-31495607:-,striatin_3,STXBP6->chr14:25278862-25519503:-,syntaxin_binding_protein_6	NCIH2029_LUNG	0.36	0.74	0.3626	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	FAM179B--RP11-945F5.1	17	3	FAM179B	3260	chr14:45433670:+	RP11-945F5.1	34357	chr14:46037729:+	ONLY_REF_SPLICE	YES	29	0	0.41	1	0.1813	0.032	FAM179B->chr14:45431411-45543634:+,family_with_sequence_similarity_179_member_B,RP11-945F5.1->chr14:46037198-46038272:+	NCIH2029_LUNG	0.41	1	0.2133	TRUE	0	1	0	2	1	TRUE	ACH-000298
NCIH2029_LUNG	DDOST--RP4-749H3.1	15	9	DDOST	1627	chr1:20987374:-	RP4-749H3.1	20617	chr1:20700231:-	ONLY_REF_SPLICE	YES	477	10	0.05	0.71	0.16	0.096	DDOST->chr1:20978270-20988000:-,dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_non-catalytic_subunit,RP4-749H3.1->chr1:20687072-20757727:-	NCIH2029_LUNG	0.05	0.71	0.256	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	CLIP2--CACNA2D2	10	6	CLIP2	19155	chr7:73811563:+	CACNA2D2	36348	chr3:50418557:-	ONLY_REF_SPLICE	YES	7	0	0.7	1	0.1067	0.064	CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+,CACNA2D2->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_2,chr3:50400233-50541675:-	NCIH2029_LUNG	0.7	1	0.1707	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	DDOST--RP4-749H3.1	6	18	DDOST	1627	chr1:20987374:-	RP4-749H3.1	12778	chr1:20732762:-	ONLY_REF_SPLICE	YES	477	0	0.05	1	0.064	0.192	DDOST->chr1:20978270-20988000:-,dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_non-catalytic_subunit,RP4-749H3.1->chr1:20687072-20757727:-	NCIH2029_LUNG	0.05	1	0.256	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	DSE--NT5DC1	4	14	DSE	4763	chr6:116601423:+	NT5DC1	39937	chr6:116565072:+	ONLY_REF_SPLICE	YES	55	39	0.25	0.32	0.0427	0.1493	LOCAL_REARRANGEMENT:+:[4676],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	NCIH2029_LUNG	0.25	0.32	0.192	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	GPC6--MYO16	2	12	GPC6	4326	chr13:94482798:+	MYO16	37142	chr13:109550364:+	ONLY_REF_SPLICE	YES	39	50	0.26	0.22	0.0213	0.128	GPC6->chr13:93879095-95059655:+,glypican_6,MYO16->chr13:109248500-109860355:+,myosin_XVI	NCIH2029_LUNG	0.22	0.26	0.1493	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	STRN3--STXBP6	4	4	STRN3	1498	chr14:31495110:-	STXBP6	33298	chr14:25326363:-	ONLY_REF_SPLICE	YES	60	47	0.12	0.15	0.0427	0.0427	STRN3->chr14:31363005-31495607:-,striatin_3,STXBP6->chr14:25278862-25519503:-,syntaxin_binding_protein_6	NCIH2029_LUNG	0.12	0.15	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	DSE--NT5DC1	2	7	DSE	4234	chr6:116600894:+	NT5DC1	39937	chr6:116565072:+	ONLY_REF_SPLICE	YES	52	39	0.15	0.19	0.0213	0.0747	LOCAL_REARRANGEMENT:+:[4676],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	NCIH2029_LUNG	0.15	0.19	0.096	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	SSBP1--MGAM	2	2	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0.0213	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	NCIH2029_LUNG	1	1	0.0426	TRUE	0	1	0	7	1	TRUE	ACH-000298
NCIH2029_LUNG	NKX2-1-AS1--ZFHX2	2	1	NKX2-1-AS1	1402	chr14:36988884:+	ZFHX2	11713	chr14:24004583:-	ONLY_REF_SPLICE	YES	0	49	1	0.06	0.0213	0.0107	NKX2-1-AS1->NKX2-1_antisense_RNA_1,chr14:36988483-36992221:+,ZFHX2->chr14:23990066-24025401:-,zinc_finger_homeobox_2	NCIH2029_LUNG	0.06	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	ANO9--MAFK	2	0	ANO9	1091	chr11:441921:-	MAFK	18014	chr7:1578785:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	ANO9->anoctamin_9,chr11:417933-442011:-,MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	DOCK4--ZYG11B	2	0	DOCK4	1310	chr7:111846157:-	ZYG11B	64090	chr1:53222130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,ZYG11B->chr1:53192126-53293014:+,zyg-11_family_member_B,_cell_cycle_regulator	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	HECTD4--VANGL1	2	0	HECTD4	18230	chr12:112701888:-	VANGL1	92589	chr1:116233740:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,VANGL1->VANGL_planar_cell_polarity_protein_1,chr1:116184574-116240845:+	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	IST1--KDM4A	2	0	IST1	15609	chr16:71957283:+	KDM4A	23961	chr1:44118808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	IST1->IST1,_ESCRT-III_associated_factor,chr16:71879899-71962913:+,KDM4A->chr1:44115829-44171186:+,lysine_demethylase_4A	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	NAA50--SPICE1	2	0	NAA50	1359	chr3:113464789:-	SPICE1	18285	chr3:113218429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	NAA50->N(alpha)-acetyltransferase_50,_NatE_catalytic_subunit,chr3:113435307-113465147:-,SPICE1->chr3:113161565-113234034:-,spindle_and_centriole_associated_protein_1	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	PPP2CA--EZH2	2	0	PPP2CA	9489	chr5:133534777:-	EZH2	31184	chr7:148512638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	PPP2CA->chr5:133530025-133561833:-,protein_phosphatase_2_catalytic_subunit_alpha,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	RP11-155G15.2--RAB3GAP1	2	0	RP11-155G15.2	1071	chr5:96519373:+	RAB3GAP1	14650	chr2:135870721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RP11-155G15.2->chr5:96519303-96772921:+,RAB3GAP1->RAB3_GTPase_activating_protein_catalytic_subunit_1,chr2:135809835-135933964:+	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	SHFM1--DLX6-AS1	2	0	SHFM1	1204	chr7:96339000:-	DLX6-AS1	31487	chr7:96598430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	4	0	TRUE	ACH-000298
NCIH2029_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0107	0.0107	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH2029_LUNG	1	1	0.0214	TRUE	0	4	1	7	4	TRUE	ACH-000298
NCIH2029_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0107	0.0107	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH2029_LUNG	0.67	1	0.0214	TRUE	0	0	0	4	0	TRUE	ACH-000298
M059K_CENTRAL_NERVOUS_SYSTEM	JARID2--ZNF423	27	17	JARID2	5780	chr6:15410596:+	ZNF423	33009	chr16:49823457:-	ONLY_REF_SPLICE	YES	11	1	0.8	0.98	0.3775	0.2377	{Klijn_CCL:Brain=1},JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,ZNF423->Oncogene{Bushman},chr16:49521435-49891830:-,zinc_finger_protein_423	M059K_CENTRAL_NERVOUS_SYSTEM	0.8	0.98	0.6152	TRUE	0	0	0	1	0	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	AL589743.1--RP11-536C10.17	7	3	AL589743.1	5091	chr14:19656224:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	512	0	0.02	1	0.0979	0.0419	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.1398	TRUE	0	4	0	3	4	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	7	3	AP000525.9	5082	chr22:16186811:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	227	0	0.04	1	0.0979	0.0419	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	M059K_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.1398	TRUE	0	3	0	6	3	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	JARID2--ZNF423	3	7	JARID2	3478	chr6:15374483:+	ZNF423	33009	chr16:49823457:-	ONLY_REF_SPLICE	YES	5	1	0.67	0.91	0.0419	0.0979	{Klijn_CCL:Brain=1},JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,ZNF423->Oncogene{Bushman},chr16:49521435-49891830:-,zinc_finger_protein_423	M059K_CENTRAL_NERVOUS_SYSTEM	0.67	0.91	0.1398	TRUE	0	0	0	1	0	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	JARID2--ZNF423	1	12	JARID2	5780	chr6:15410596:+	ZNF423	35134	chr16:49764882:-	ONLY_REF_SPLICE	YES	11	2	0.54	0.87	0.014	0.1678	{Klijn_CCL:Brain=1},JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,ZNF423->Oncogene{Bushman},chr16:49521435-49891830:-,zinc_finger_protein_423	M059K_CENTRAL_NERVOUS_SYSTEM	0.54	0.87	0.1818	TRUE	0	0	0	1	0	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	JARID2--ZNF423	2	7	JARID2	3478	chr6:15374483:+	ZNF423	31938	chr16:49856649:-	ONLY_REF_SPLICE	YES	5	1	0.64	0.9	0.028	0.0979	{Klijn_CCL:Brain=1},JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,ZNF423->Oncogene{Bushman},chr16:49521435-49891830:-,zinc_finger_protein_423	M059K_CENTRAL_NERVOUS_SYSTEM	0.64	0.9	0.1259	TRUE	0	0	0	1	0	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.0419	TRUE	0	5	0	18	5	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	JARID2--ZNF423	1	5	JARID2	3478	chr6:15374483:+	ZNF423	35134	chr16:49764882:-	ONLY_REF_SPLICE	YES	5	2	0.55	0.75	0.014	0.0699	{Klijn_CCL:Brain=1},JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,ZNF423->Oncogene{Bushman},chr16:49521435-49891830:-,zinc_finger_protein_423	M059K_CENTRAL_NERVOUS_SYSTEM	0.55	0.75	0.0839	TRUE	0	0	0	1	0	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	GRB14--SCN7A	2	0	GRB14	3001	chr2:165476197:-	SCN7A	29944	chr2:167313586:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	GRB14->chr2:165349322-165478358:-,growth_factor_receptor_bound_protein_14,SCN7A->chr2:167260083-167350757:-,sodium_voltage-gated_channel_alpha_subunit_7	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	DMRTA1--RP11-399D6.2	1	1	DMRTA1	1892	chr9:22447731:+	RP11-399D6.2	11667	chr9:22674442:+	ONLY_REF_SPLICE	YES	10	1	0.17	0.67	0.014	0.014	DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+,RP11-399D6.2->chr9:22646199-22824212:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.17	0.67	0.028	TRUE	0	1	0	4	1	TRUE	ACH-000152
TO175T_FIBROBLAST	BRPF3--THRAP3	3	1	BRPF3	4356	chr6:36169547:+	THRAP3	28223	chr1:36754661:+	ONLY_REF_SPLICE	YES	19	28	0.17	0.12	0.0389	0.013	BRPF3->bromodomain_and_PHD_finger_containing_3,chr6:36164521-36200567:+,THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3	TO175T_FIBROBLAST	0.12	0.17	0.0519	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	NSD1--ADM	3	0	NSD1	36792	chr5:176722196:+	ADM	46758	chr11:10328172:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ADM->adrenomedullin,chr11:10326227-10328944:+	TO175T_FIBROBLAST	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	PTBP1--MFGE8	3	0	PTBP1	10951	chr19:810922:+	MFGE8	18757	chr15:89453147:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1,MFGE8->chr15:89441916-89456642:-,milk_fat_globule-EGF_factor_8_protein	TO175T_FIBROBLAST	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	ABI3BP--KTN1	2	0	ABI3BP	52773	chr3:100515253:-	KTN1	109395	chr14:56133959:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	ABI3BP->ABI_family_member_3_binding_protein,chr3:100468000-100712359:-,KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	ADAMTS2--FBXW11	2	0	ADAMTS2	2636	chr5:178770768:-	FBXW11	38741	chr5:171337801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	ADAMTS2->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_2,chr5:178537852-178772431:-,FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	APOLD1--SPECC1L	2	0	APOLD1	1180	chr12:12879030:+	SPECC1L	39640	chr22:24765186:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	ARHGEF10L--SKI	2	0	ARHGEF10L	31309	chr1:17991090:+	SKI	45127	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	ARHGEF10L->Rho_guanine_nucleotide_exchange_factor_10_like,chr1:17866330-18024369:+,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	CTSD--NCOA5	2	0	CTSD	8746	chr11:1775033:-	NCOA5	15001	chr20:44699175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	CTSD->cathepsin_D,chr11:1773982-1785222:-,NCOA5->chr20:44689624-44718591:-,nuclear_receptor_coactivator_5	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	DAGLB--SAMD3	2	0	DAGLB	1224	chr7:6523598:-	SAMD3	32741	chr6:130505768:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	DAGLB->chr7:6448757-6523821:-,diacylglycerol_lipase_beta,SAMD3->chr6:130465460-130686570:-,sterile_alpha_motif_domain_containing_3	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	DFFA--TARDBP	2	0	DFFA	2366	chr1:10529234:-	TARDBP	22014	chr1:11082181:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	DFFA->DNA_fragmentation_factor_subunit_alpha,chr1:10516579-10532583:-,TARDBP->TAR_DNA_binding_protein,chr1:11072414-11085796:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	FBLN1--GNAS	2	0	FBLN1	15741	chr22:45939406:+	GNAS	48923	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	FBLN1->Oncogene{Bushman},chr22:45898118-45997015:+,fibulin_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	FOSB--AKT2	2	0	FOSB	1718	chr19:45971970:+	AKT2	21522	chr19:40771258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	FOSB->FosB_proto-oncogene,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr19:45971253-45978437:+,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	FOSB--HNRNPF	2	0	FOSB	1718	chr19:45971970:+	HNRNPF	14229	chr10:43892038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	FOSB->FosB_proto-oncogene,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr19:45971253-45978437:+,HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	GRIN2D--RP11-1407O15.2	2	0	GRIN2D	4173	chr19:48908610:+	RP11-1407O15.2	34411	chr17:36347082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GRIN2D->Oncogene{Bushman},chr19:48898132-48948188:+,glutamate_ionotropic_receptor_NMDA_type_subunit_2D,RP11-1407O15.2->chr17:36337717-36421858:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	HMGN2--ACTB	2	0	HMGN2	1178	chr1:26799118:+	ACTB	11877	chr7:5569294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	HOXD3--TRIB3	2	0	HOXD3	1388	chr2:177001727:+	TRIB3	19203	chr20:368655:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	HOXD3->chr2:177001340-177037830:+,homeobox_D3,TRIB3->chr20:361261-378203:+,tribbles_pseudokinase_3	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	LRRC8A--SSU72	2	0	LRRC8A	3925	chr9:131648400:+	SSU72	15500	chr1:1500296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	LRRC8A->chr9:131644391-131680318:+,leucine-rich_repeat_containing_8_family_member_A,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	MSRB3--LEMD3	2	0	MSRB3	1223	chr12:65672645:+	LEMD3	25573	chr12:65632282:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	LOCAL_REARRANGEMENT:+:[30316],MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3,LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	NAA60--MIR4435-1HG	2	0	NAA60	1084	chr16:3415182:+	MIR4435-1HG	35836	chr2:112125152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	NAA60->N(alpha)-acetyltransferase_60,_NatF_catalytic_subunit,chr16:3415099-3536960:+,chr16:3493611-3536963:+,MIR4435-1HG->chr2:111953927-112252677:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	NR3C1--YIPF5	2	0	NR3C1	10508	chr5:142779221:-	YIPF5	28139	chr5:143545168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	NR3C1->chr5:142657496-142815077:-,nuclear_receptor_subfamily_3_group_C_member_1,YIPF5->Yip1_domain_family_member_5,chr5:143537723-143550278:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	OAZ1--CDC42EP1	2	0	OAZ1	1259	chr19:2269743:+	CDC42EP1	11510	chr22:37962079:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,CDC42EP1->CDC42_effector_protein_1,Oncogene{Bushman},chr22:37956454-37965412:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	PPP1R12A--PPIL6	2	0	PPP1R12A	15835	chr12:80201006:-	PPIL6	44285	chr6:109740446:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,PPIL6->chr6:109711418-109762374:-,peptidylprolyl_isomerase_like_6	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	PRDM15--PPP2R4	2	0	PRDM15	1213	chr21:43299379:-	PPP2R4	57045	chr9:131904724:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	PRDM15->PR_domain_15,chr21:43218385-43299591:-,PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	QRSL1--RTN4	2	0	QRSL1	1128	chr6:107077580:+	RTN4	18692	chr2:55307775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	QRSL1->chr6:107077453-107116292:+,glutaminyl-tRNA_synthase_(glutamine-hydrolyzing)-like_1,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	RP11-1055B8.6--WDR1	2	0	RP11-1055B8.6	2545	chr17:79373717:+	WDR1	29204	chr4:10077108:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	RP11-1055B8.6->chr17:79369275-79375658:+,WDR1->WD_repeat_domain_1,chr4:10075963-10118573:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	RUSC2--DCAKD	2	0	RUSC2	1046	chr9:35490169:+	DCAKD	18665	chr17:43112367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	RUSC2->RUN_and_SH3_domain_containing_2,chr9:35490124-35561895:+,DCAKD->chr17:43100708-43138473:-,dephospho-CoA_kinase_domain_containing	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	TANC1--N4BP2L2	2	0	TANC1	26696	chr2:160075872:+	N4BP2L2	48073	chr13:33096407:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	TGFBR3--SEP15	2	0	TGFBR3	15726	chr1:92224170:-	SEP15	43198	chr1:87329288:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	TGFBR3->Oncogene{Bushman},chr1:92145902-92371892:-,transforming_growth_factor_beta_receptor_3,SEP15->chr1:87328132-87380107:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	UGCG--EXT2	2	0	UGCG	2690	chr9:114677026:+	EXT2	20527	chr11:44129233:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+,EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	USP34--SNX14	2	0	USP34	27982	chr2:61523935:-	SNX14	94078	chr6:86251761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,SNX14->chr6:86215214-86303874:-,sorting_nexin_14	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	VAV2--COL5A1	2	0	VAV2	2729	chr9:136804225:-	COL5A1	48428	chr9:137619112:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	WIPI1--C6orf165	2	0	WIPI1	11947	chr17:66424970:-	C6orf165	39226	chr6:88210876:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	WIPI1->WD_repeat_domain,_phosphoinositide_interacting_1,chr17:66417089-66453654:-,C6orf165->chr6:88117730-88221352:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	ZBTB4--TIPARP	2	0	ZBTB4	1260	chr17:7387323:-	TIPARP	17895	chr3:156395446:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	ZBTB4->chr17:7362685-7387582:-,zinc_finger_and_BTB_domain_containing_4,TIPARP->TCDD_inducible_poly(ADP-ribose)_polymerase,chr3:156391024-156424559:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	ZNF106--COBLL1	2	0	ZNF106	10360	chr15:42740270:-	COBLL1	67118	chr2:165542542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	ZNF106->chr15:42705021-42783321:-,zinc_finger_protein_106,COBLL1->chr2:165510134-165700189:-,cordon-bleu_WH2_repeat_protein_like_1	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	ZSCAN5A--CTD-2583A14.9	2	0	ZSCAN5A	6325	chr19:56824652:-	CTD-2583A14.9	29343	chr19:58388410:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	PROTCLUST,ZSCAN5A->chr19:56732681-56879752:-,zinc_finger_and_SCAN_domain_containing_5A,CTD-2583A14.9->chr19:58388133-58427959:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--KLHL20	26	21	RABGAP1L	18286	chr1:174363283:+	KLHL20	56695	chr1:173702852:+	ONLY_REF_SPLICE	YES	209	32	0.18	0.59	0.5016	0.4051	{Klijn_CCL:Lung=1},RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,KLHL20->chr1:173684080-173755840:+,kelch_like_family_member_20	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.59	0.9067	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV16--TRAC	4	93	TRAV16	1046	chr14:22458780:+	TRAC	4444	chr14:23016447:+	ONLY_REF_SPLICE	YES	278	0	0.26	1	0.0772	1.7942	HGNC_GENEFAM,TRAV16->T_cell_receptor_alpha_variable_16,chr14:22458735-22459177:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	1.8714	TRUE	1	12	0	1	12	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--KLHL20	8	7	RABGAP1L	17135	chr1:174340210:+	KLHL20	56695	chr1:173702852:+	ONLY_REF_SPLICE	YES	273	32	0.05	0.32	0.1543	0.135	{Klijn_CCL:Lung=1},RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,KLHL20->chr1:173684080-173755840:+,kelch_like_family_member_20	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.32	0.2893	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--KLHL20	5	4	RABGAP1L	18286	chr1:174363283:+	KLHL20	58496	chr1:173720903:+	ONLY_REF_SPLICE	YES	209	37	0.04	0.2	0.0965	0.0772	{Klijn_CCL:Lung=1},RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,KLHL20->chr1:173684080-173755840:+,kelch_like_family_member_20	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.2	0.1737	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--RPL3	3	0	RCC1	2175	chr1:28834672:+	RPL3	20675	chr22:39714597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0579	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--GNAS	2	0	C17orf76-AS1	1593	chr17:16342728:+	GNAS	29039	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	C17orf76-AS1->chr17:16342136-16381992:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	4	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--ITFG1	2	0	C17orf76-AS1	1593	chr17:16342728:+	ITFG1	36548	chr16:47271919:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	C17orf76-AS1->chr17:16342136-16381992:+,ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS5--MAP2K5	2	0	GAS5	3355	chr1:173835666:-	MAP2K5	37802	chr15:68061940:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding),MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTX3--PSMA1	2	0	MTX3	3798	chr5:79284285:-	PSMA1	21614	chr11:14535245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	MTX3->chr5:79275584-79287082:-,metaxin_3,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--PSMG3	2	0	RCC1	2175	chr1:28834672:+	PSMG3	20523	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	2	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--RPL3	2	0	RCC1	2175	chr1:28834672:+	RPL3	21638	chr22:39713634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SGSM2--EXT2	2	0	SGSM2	2324	chr17:2246914:+	EXT2	26490	chr11:44129233:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	SGSM2->chr17:2240792-2284352:+,small_G_protein_signaling_modulator_2,EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMLHE--BRCC3	2	0	TMLHE	2332	chrX:154842453:-	BRCC3	24413	chrX:154344332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,BRCC3->BRCA1/BRCA2-containing_complex_subunit_3,chrX:154299695-154351349:+	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000206
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NASP--IGF2BP2	177	106	NASP	1360	chr1:46049877:+	IGF2BP2	29043	chr3:185416135:-	ONLY_REF_SPLICE	YES	296	2	0.49	0.99	1.8717	1.1209	NASP->chr1:46049518-46084566:+,nuclear_autoantigenic_sperm_protein,IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.99	2.9926	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	QKI--RTN4R	91	31	QKI	2336	chr6:163836367:+	RTN4R	37682	chr22:20230633:-	ONLY_REF_SPLICE	YES	15	15	0.89	0.89	0.9623	0.3278	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,RTN4R->chr22:20228938-20270769:-,reticulon_4_receptor	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.89	1.2901	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTCF--RP11-67H24.2	63	14	CTCF	2435	chr16:67605167:+	RP11-67H24.2	17584	chr16:32820854:+	INCL_NON_REF_SPLICE	YES	51	0	0.6	1	0.6662	0.148	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,RP11-67H24.2->chr16:32820877-32835966:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.8142	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0020--ATP8A2	54	18	KIAA0020	3511	chr9:2837180:-	ATP8A2	52303	chr13:26273311:+	ONLY_REF_SPLICE	YES	53	0	0.58	1	0.571	0.1903	KIAA0020->chr9:2720469-2844241:-,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	1	0.7613	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAPKBP1--PTPRD	43	11	MAPKBP1	1956	chr15:42067587:+	PTPRD	26413	chr9:10033790:-	ONLY_REF_SPLICE	YES	7	0	0.89	1	0.4547	0.1163	MAPKBP1->chr15:42066632-42120053:+,mitogen-activated_protein_kinase_binding_protein_1,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.571	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC23A2--AC091132.1	39	1	SLC23A2	2214	chr20:4982052:-	AC091132.1	28870	chr17:43532164:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4124	0.0106	SLC23A2->chr20:4833002-4990939:-,solute_carrier_family_23_member_2,AC091132.1->chr17:43530210-43541431:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.423	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTCF--RP11-67H24.2	20	7	CTCF	2435	chr16:67605167:+	RP11-67H24.2	18717	chr16:32821987:+	ONLY_REF_SPLICE	YES	51	5	0.35	0.84	0.2115	0.074	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,RP11-67H24.2->chr16:32820877-32835966:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.84	0.2855	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTCF--RP11-67H24.2	13	4	CTCF	2435	chr16:67605167:+	RP11-67H24.2	19903	chr16:32835739:+	ONLY_REF_SPLICE	YES	51	4	0.25	0.81	0.1375	0.0423	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,RP11-67H24.2->chr16:32820877-32835966:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.81	0.1798	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPN14--RNLS	12	2	PTPN14	2267	chr1:214724526:-	RNLS	47932	chr10:90122482:-	ONLY_REF_SPLICE	YES	1	10	0.93	0.58	0.1269	0.0211	PTPN14->Oncogene{Bushman},chr1:214522039-214725792:-,protein_tyrosine_phosphatase,_non-receptor_type_14,RNLS->chr10:90033621-90344287:-,renalase,_FAD-dependent_amine_oxidase	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.93	0.148	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NASP--IGF2BP2	3	28	NASP	1360	chr1:46049877:+	IGF2BP2	32871	chr3:185407415:-	ONLY_REF_SPLICE	YES	296	26	0.09	0.54	0.0317	0.2961	NASP->chr1:46049518-46084566:+,nuclear_autoantigenic_sperm_protein,IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.54	0.3278	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTCF--RP11-67H24.2	5	7	CTCF	2435	chr16:67605167:+	RP11-67H24.2	18544	chr16:32821814:+	ONLY_REF_SPLICE	YES	51	0	0.19	1	0.0529	0.074	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,RP11-67H24.2->chr16:32820877-32835966:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.1269	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV25--TRAJ40	4	1	TRAV25	1675	chr14:22580974:+	TRAJ40	4682	chr14:22968668:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0.0106	HGNC_GENEFAM,TRAV25->T_cell_receptor_alpha_variable_25,chr14:22580300-22580984:+,TRAJ40->T_cell_receptor_alpha_joining_40,chr14:22968672-22968732:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0529	TRUE	0	1	0	1	1	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DEF6--PRDM2	3	0	DEF6	7461	chr6:35286168:+	PRDM2	27715	chr1:14105096:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	DEF6->DEF6,_guanine_nucleotide_exchange_factor,chr6:35265595-35289548:+,PRDM2->Oncogene{Bushman},PR_domain_2,chr1:14026693-14151574:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0020--ATP8A2	3	0	KIAA0020	1197	chr9:2844045:-	ATP8A2	52303	chr13:26273311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	KIAA0020->chr9:2720469-2844241:-,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDHX--SEPT6	3	0	PDHX	13706	chr11:35016599:+	SEPT6	30115	chrX:118763435:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,SEPT6->Oncogene{Bushman},chrX:118749687-118827333:-,septin_6	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIP4K2A--RBM27	3	0	PIP4K2A	19634	chr10:22825721:-	RBM27	28965	chr5:145609377:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-440L14.1--CTBP1	3	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	2	0	7	2	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD2--STIM1	3	0	SMAD2	1784	chr18:45456732:-	STIM1	49660	chr11:4091256:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-,STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZCCHC10--HSPA4	3	0	ZCCHC10	1108	chr5:132362189:-	HSPA4	17269	chr5:132408922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_INVERSION:-:+:[25358],ZCCHC10->chr5:132332677-132362296:-,zinc_finger_CCHC-type_containing_10,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP3D1--SIN3B	2	0	AP3D1	25116	chr19:2108686:-	SIN3B	49252	chr19:16986866:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,SIN3B->SIN3_transcription_regulator_family_member_B,chr19:16940211-16991164:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATL2--MGAT4A	2	0	ATL2	6688	chr2:38570410:-	MGAT4A	24843	chr2:99343030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP6V0E2--ZNF862	2	0	ATP6V0E2	5235	chr7:149575879:+	ZNF862	11410	chr7:149541714:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:+:[5489],ATP6V0E2->ATPase_H+_transporting_V0_subunit_e2,chr7:149570057-149577784:+,ZNF862->chr7:149535456-149564568:+,zinc_finger_protein_862	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU2--CDK8	2	0	DLEU2	5811	chr13:50642233:-	CDK8	16360	chr13:26911704:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),CDK8->ArcherDX_panel,FoundationOne_panel,chr13:26828276-26979375:+,cyclin-dependent_kinase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FANCI--TUBGCP6	2	0	FANCI	30845	chr15:89848929:+	TUBGCP6	54306	chr22:50658444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIF1A--HERPUD2	2	0	HIF1A	11809	chr14:62203827:+	HERPUD2	31518	chr7:35674039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,HERPUD2->HERPUD_family_member_2,chr7:35672269-35735181:-	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IRAK1--SUPT5H	2	0	IRAK1	4949	chrX:153281483:-	SUPT5H	28399	chr19:39961997:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	IRAK1->chrX:153275951-153285431:-,interleukin_1_receptor_associated_kinase_1,SUPT5H->SPT5_homolog,_DSIF_elongation_factor_subunit,chr19:39926796-39967310:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1551--LINC00339	2	0	KIAA1551	4726	chr12:32123290:+	LINC00339	20114	chr1:22356773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	KIAA1551->KIAA1551,chr12:32112304-32146039:+,LINC00339->chr1:22351681-22357716:+,long_intergenic_non-protein_coding_RNA_339	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MFN1--ZNF638	2	0	MFN1	2272	chr3:179066751:+	ZNF638	66533	chr2:71655677:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	MFN1->chr3:179065480-179112719:+,mitofusin_1,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT4A--CTD-2410N18.5	2	0	MGAT4A	3575	chr2:99342702:-	CTD-2410N18.5	28536	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A,CTD-2410N18.5->chr5:133502861-133561762:-	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTERF--ACN9	2	0	MTERF	1666	chr7:91509369:-	ACN9	16199	chr7:96765700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	MTERF->chr7:91321323-91510034:-,ACN9->chr7:96745902-96811075:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUCB1--ZC3H14	2	0	NUCB1	1882	chr19:49404188:+	ZC3H14	21792	chr14:89041037:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NUCB1->chr19:49403307-49426629:+,nucleobindin_1,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPARD--HINT1	2	0	PPARD	8663	chr6:35392556:+	HINT1	20427	chr5:130495304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PPARD->Oncogene{Bushman},chr6:35310335-35395968:+,peroxisome_proliferator_activated_receptor_delta,HINT1->chr5:130494720-130507428:-,histidine_triad_nucleotide_binding_protein_1	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RHOH--CORIN	2	0	RHOH	4526	chr4:40198920:+	CORIN	22868	chr4:47809064:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RHOH->Oncogene{Bushman},chr4:40192673-40248587:+,ras_homolog_family_member_H,CORIN->chr4:47596015-47840123:-,corin,_serine_peptidase	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF4--ADD1	2	0	RNF4	8817	chr4:2492229:+	ADD1	29951	chr4:2877623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RNF4->chr4:2463947-2627047:+,ring_finger_protein_4,ADD1->adducin_1,chr4:2845584-2931803:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-357C3.3--ARHGEF9	2	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	21715	chrX:62944591:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	2	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPAP2--GPATCH2L	2	0	RPAP2	13304	chr1:92846430:+	GPATCH2L	63297	chr14:76696151:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RPAP2->RNA_polymerase_II_associated_protein_2,chr1:92764522-92867613:+,GPATCH2L->G-patch_domain_containing_2_like,chr14:76618259-76720685:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SAMHD1--KAT8	2	0	SAMHD1	15871	chr20:35526225:-	KAT8	24080	chr16:31128784:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-,KAT8->chr16:31127075-31142714:+,lysine_acetyltransferase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	U2SURP--ATR	2	0	U2SURP	20622	chr3:142747488:+	ATR	44013	chr3:142281951:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAND3--ATF7IP2	2	0	ZFAND3	1518	chr6:37787792:+	ATF7IP2	35514	chr16:10567336:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,ATF7IP2->activating_transcription_factor_7_interacting_protein_2,chr16:10420291-10577495:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF736--ERCC6	2	0	ZNF736	8361	chr7:63797360:+	ERCC6	25205	chr10:50732823:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,ERCC6->Oncogene{Bushman},chr10:50663414-50747584:-,excision_repair_cross-complementation_group_6	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXW7--GABRB2	1	1	FBXW7	15935	chr4:153251884:-	GABRB2	28455	chr5:160975029:-	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0106	0.0106	FBXW7->ArcherDX_panel,F-box_and_WD_repeat_domain_containing_7,FoundationOne_panel,Oncogene{Bushman},chr4:153242410-153457253:-,GABRB2->chr5:160715436-160976050:-,gamma-aminobutyric_acid_type_A_receptor_beta2_subunit	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000122
SCC9_UPPER_AERODIGESTIVE_TRACT	NBR1--MYH11	99	24	NBR1	21155	chr17:41355803:+	MYH11	63398	chr16:15815491:-	ONLY_REF_SPLICE	YES	72	0	0.63	1	0.7858	0.1905	{Klijn_CCL:Head-Neck=1},NBR1->Oncogene{Bushman},chr17:41322498-41363708:+,neighbor_of_BRCA1_gene_1,MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	SCC9_UPPER_AERODIGESTIVE_TRACT	0.63	1	0.9763	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	KIF24--GNE	78	22	KIF24	3933	chr9:34306250:-	GNE	23689	chr9:36249394:-	ONLY_REF_SPLICE	YES	3	79	0.97	0.56	0.6191	0.1746	{Klijn_CCL:Head-Neck=1},KIF24->chr9:34252379-34329198:-,kinesin_family_member_24,GNE->chr9:36214438-36277053:-,glucosamine_(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine_kinase	SCC9_UPPER_AERODIGESTIVE_TRACT	0.56	0.97	0.7937	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	TNS4--IFT122	25	10	TNS4	8259	chr17:38638381:-	IFT122	30054	chr3:129188185:+	ONLY_REF_SPLICE	YES	608	13	0.05	0.73	0.1984	0.0794	TNS4->chr17:38632080-38657849:-,tensin_4,IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122	SCC9_UPPER_AERODIGESTIVE_TRACT	0.05	0.73	0.2778	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	NSD1--NCOA7	10	10	NSD1	7689	chr5:176631293:+	NCOA7	63001	chr6:126236479:+	ONLY_REF_SPLICE	YES	10	14	0.67	0.59	0.0794	0.0794	NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7	SCC9_UPPER_AERODIGESTIVE_TRACT	0.59	0.67	0.1588	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	AP000275.65--RUNX1	9	4	AP000275.65	2345	chr21:33982148:-	RUNX1	18482	chr21:37236765:-	ONLY_REF_SPLICE	YES	26	0	0.33	1	0.0714	0.0317	AP000275.65->chr21:33951132-33984591:-,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	SCC9_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.1031	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	KIF24--GNE	4	24	KIF24	5031	chr9:34297015:-	GNE	23689	chr9:36249394:-	ONLY_REF_SPLICE	YES	5	79	0.85	0.26	0.0317	0.1905	{Klijn_CCL:Head-Neck=1},KIF24->chr9:34252379-34329198:-,kinesin_family_member_24,GNE->chr9:36214438-36277053:-,glucosamine_(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine_kinase	SCC9_UPPER_AERODIGESTIVE_TRACT	0.26	0.85	0.2222	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	PRKCH--SPTB	8	1	PRKCH	22811	chr14:61924397:+	SPTB	43322	chr14:65289863:-	ONLY_REF_SPLICE	YES	31	0	0.23	1	0.0635	0.0079	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,SPTB->chr14:65213002-65346601:-,spectrin_beta,_erythrocytic	SCC9_UPPER_AERODIGESTIVE_TRACT	0.23	1	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	ATF7--TMTC1	4	0	ATF7	13231	chr12:53917060:-	TMTC1	48530	chr12:29673653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,TMTC1->chr12:29653773-29937692:-,transmembrane_and_tetratricopeptide_repeat_containing_1	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	ATF7--TMTC1	2	0	ATF7	15239	chr12:53910799:-	TMTC1	48530	chr12:29673653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,TMTC1->chr12:29653773-29937692:-,transmembrane_and_tetratricopeptide_repeat_containing_1	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	CLTA--SIGMAR1	2	0	CLTA	4686	chr9:36204176:+	SIGMAR1	16846	chr9:34637417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	CLTA->chr9:36190853-36304778:+,clathrin_light_chain_A,SIGMAR1->chr9:34634719-34637806:-,sigma_non-opioid_intracellular_receptor_1	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	SLC25A32--ATP6V1C1	2	0	SLC25A32	1406	chr8:104427012:-	ATP6V1C1	19009	chr8:104066112:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	STX18-AS1--EIF4A1	2	0	STX18-AS1	2665	chr4:4546634:+	EIF4A1	19699	chr17:7478437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	TMCC1--MSL2	2	0	TMCC1	11579	chr3:129546646:-	MSL2	30270	chr3:135871580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	TMCC1--MSL2	2	0	TMCC1	12719	chr3:129513167:-	MSL2	30270	chr3:135871580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	AP000275.65--RUNX1	1	2	AP000275.65	1177	chr21:33984415:-	RUNX1	18482	chr21:37236765:-	ONLY_REF_SPLICE	YES	44	0	0.06	1	0.0079	0.0159	AP000275.65->chr21:33951132-33984591:-,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	SCC9_UPPER_AERODIGESTIVE_TRACT	0.06	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	EPHA3--TF	1	2	EPHA3	4039	chr3:89259670:+	TF	28311	chr3:133467256:+	ONLY_REF_SPLICE	NO	5	0	0.38	1	0.0079	0.0159	EPHA3->ArcherDX_panel,EPH_receptor_A3,FoundationOne_panel,Oncogene{Bushman},chr3:89156674-89531284:+,TF->chr3:133464800-133497850:+,transferrin	SCC9_UPPER_AERODIGESTIVE_TRACT	0.38	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	PRKCH--SPTB	1	2	PRKCH	24103	chr14:61930078:+	SPTB	43322	chr14:65289863:-	ONLY_REF_SPLICE	NO	38	0	0.07	1	0.0079	0.0159	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,SPTB->chr14:65213002-65346601:-,spectrin_beta,_erythrocytic	SCC9_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	AP000275.65--RUNX1	1	1	AP000275.65	2345	chr21:33982148:-	RUNX1	20721	chr21:36953227:-	ONLY_REF_SPLICE	YES	26	0	0.07	1	0.0079	0.0079	AP000275.65->chr21:33951132-33984591:-,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	SCC9_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000181
COV318_OVARY	CCDC88C--GLIS3-AS1	80	37	CCDC88C	3216	chr14:91875003:-	GLIS3-AS1	47236	chr9:3900833:+	ONLY_REF_SPLICE	YES	25	94	0.82	0.55	0.7396	0.3421	CCDC88C->chr14:91737667-91884188:-,coiled-coil_domain_containing_88C,GLIS3-AS1->GLIS3_antisense_RNA_1,chr9:3898642-3901248:+	COV318_OVARY	0.55	0.82	1.0817	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	WNK1--TCEB3	20	13	WNK1	2732	chr12:863490:+	TCEB3	46113	chr1:24075511:+	ONLY_REF_SPLICE	YES	63	58	0.34	0.36	0.1849	0.1202	{Klijn_CCL:Ovary=1},WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,TCEB3->chr1:24069645-24088549:+,transcription_elongation_factor_B_subunit_3	COV318_OVARY	0.34	0.36	0.3051	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	PKN1--EPS15L1	10	3	PKN1	1490	chr19:14544354:+	EPS15L1	21889	chr19:16553030:-	ONLY_REF_SPLICE	YES	7	1	0.65	0.93	0.0925	0.0277	PKN1->chr19:14543865-14582679:+,protein_kinase_N1,EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1	COV318_OVARY	0.65	0.93	0.1202	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	MYL6--SRP9	7	1	MYL6	2462	chr12:56553406:+	SRP9	9443	chr1:225965637:+	ONLY_REF_SPLICE	YES	89	41	0.08	0.16	0.0647	0.0092	MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	COV318_OVARY	0.08	0.16	0.0739	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	BSCL2--ZNF536	6	3	BSCL2	6627	chr11:62469940:-	ZNF536	22439	chr19:30934468:+	ONLY_REF_SPLICE	YES	86	0	0.09	1	0.0555	0.0277	BSCL2->Berardinelli-Seip_congenital_lipodystrophy_2_(seipin),chr11:62457747-62477317:-,ZNF536->chr19:30719197-31204445:+,zinc_finger_protein_536	COV318_OVARY	0.09	1	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	PPARD--C6orf89	6	3	PPARD	2208	chr6:35314927:+	C6orf89	16174	chr6:36846784:+	ONLY_REF_SPLICE	YES	18	0	0.33	1	0.0555	0.0277	PPARD->Oncogene{Bushman},chr6:35310335-35395968:+,peroxisome_proliferator_activated_receptor_delta,C6orf89->chr6:36839646-36896740:+,chromosome_6_open_reading_frame_89	COV318_OVARY	0.33	1	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	CTD-2251F13.1--PRKD1	5	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0462	0.0092	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	COV318_OVARY	1	1	0.0554	TRUE	0	3	0	8	3	TRUE	ACH-000256
COV318_OVARY	MTA3--ABCG8	4	0	MTA3	6240	chr2:42806340:+	ABCG8	41273	chr2:44099115:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	{Klijn_CCL:Ovary=1},MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3,ABCG8->ATP_binding_cassette_subfamily_G_member_8,chr2:44066103-44105605:+	COV318_OVARY	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	ERCC6--PCDH15	2	1	ERCC6	3013	chr10:50740589:-	PCDH15	33319	chr10:56926411:-	ONLY_REF_SPLICE	YES	12	0	0.2	1	0.0185	0.0092	ERCC6->Oncogene{Bushman},chr10:50663414-50747584:-,excision_repair_cross-complementation_group_6,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	COV318_OVARY	0.2	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	SUPT3H--OVOL2	2	1	SUPT3H	2744	chr6:45332938:-	OVOL2	26762	chr20:18022367:-	ONLY_REF_SPLICE	YES	22	7	0.12	0.3	0.0185	0.0092	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	COV318_OVARY	0.12	0.3	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	CAPZA1--RPS27A	2	0	CAPZA1	1711	chr1:113162505:+	RPS27A	16867	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CAPZA1->capping_actin_protein_of_muscle_Z-line_alpha_subunit_1,chr1:113161795-113214241:+,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	CPSF3L--WDR82	2	0	CPSF3L	1111	chr1:1259961:-	WDR82	22561	chr3:52301034:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CPSF3L->chr1:1246965-1260071:-,cleavage_and_polyadenylation_specific_factor_3-like,WDR82->Oncogene{Bushman},WD_repeat_domain_82,chr3:52288437-52322036:-	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	COV318_OVARY	1	1	0.0185	TRUE	0	3	0	9	3	TRUE	ACH-000256
COV318_OVARY	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	COV318_OVARY	1	1	0.0185	TRUE	0	1	0	7	1	TRUE	ACH-000256
COV318_OVARY	DDX17--EIF4G3	2	0	DDX17	11449	chr22:38888061:-	EIF4G3	27736	chr1:21437876:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	EMG1--MKI67	2	0	EMG1	2414	chr12:7080253:+	MKI67	15854	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	GATAD2B--UBAP2L	2	0	GATAD2B	1243	chr1:153895209:-	UBAP2L	21454	chr1:154197560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	HIST2H4A--RBBP8	2	0	HIST2H4A	2210	chr1:149805430:+	RBBP8	17787	chr18:20526407:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	HIST2H4A->chr1:149804221-149811339:+,histone_cluster_2,_H4a,RBBP8->Oncogene{Bushman},chr18:20378224-20606451:+,retinoblastoma_binding_protein_8	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	MRPS21--SF3B1	2	0	MRPS21	1581	chr1:150266869:+	SF3B1	26360	chr2:198257912:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	MRPS21->chr1:150266289-150281414:+,mitochondrial_ribosomal_protein_S21,SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	PARP11--GNAS	2	0	PARP11	1231	chr12:3982378:-	GNAS	36777	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	PARP11->chr12:3900213-3982608:-,poly(ADP-ribose)_polymerase_family_member_11,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	TEAD1--DEFB126	2	0	TEAD1	14839	chr11:12923660:+	DEFB126	30095	chr20:126056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,DEFB126->chr20:123010-126392:+,defensin_beta_126	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	CTD-2251F13.1--PRKD1	1	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	12223	chr14:30660656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0092	0.0092	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	COV318_OVARY	1	1	0.0184	TRUE	0	0	0	4	0	TRUE	ACH-000256
COV318_OVARY	PDE7B--ZP3	1	1	PDE7B	9015	chr6:136476896:+	ZP3	23134	chr7:76054369:+	ONLY_REF_SPLICE	YES	7	14	0.22	0.12	0.0092	0.0092	PDE7B->chr6:136172834-136516712:+,phosphodiesterase_7B,ZP3->chr7:76026835-76071388:+,zona_pellucida_glycoprotein_3_(sperm_receptor)	COV318_OVARY	0.12	0.22	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	SUPT3H--OVOL2	1	1	SUPT3H	3833	chr6:45290616:-	OVOL2	24442	chr20:18037521:-	ONLY_REF_SPLICE	YES	22	3	0.08	0.4	0.0092	0.0092	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	COV318_OVARY	0.08	0.4	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000256
BT549_BREAST	ARIH2--SOS1	37	17	ARIH2	9799	chr3:48982614:+	SOS1	52613	chr2:39216455:-	ONLY_REF_SPLICE	YES	82	9	0.4	0.86	0.3175	0.1459	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	BT549_BREAST	0.4	0.86	0.4634	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	NAA25--HECTD4	19	9	NAA25	24259	chr12:112478285:-	HECTD4	96003	chr12:112623297:-	ONLY_REF_SPLICE	YES	28	8	0.5	0.78	0.163	0.0772	LOCAL_REARRANGEMENT:-:[51166],NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-	BT549_BREAST	0.5	0.78	0.2402	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	ARIH2--SOS1	8	15	ARIH2	7108	chr3:48965246:+	SOS1	52613	chr2:39216455:-	ONLY_REF_SPLICE	YES	98	9	0.19	0.72	0.0686	0.1287	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	BT549_BREAST	0.19	0.72	0.1973	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	ARIH2--SOS1	7	12	ARIH2	7108	chr3:48965246:+	SOS1	53792	chr2:39214732:-	ONLY_REF_SPLICE	YES	98	16	0.16	0.54	0.0601	0.103	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	BT549_BREAST	0.16	0.54	0.1631	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	ARIH2--SOS1	4	12	ARIH2	9799	chr3:48982614:+	SOS1	53792	chr2:39214732:-	ONLY_REF_SPLICE	YES	82	16	0.16	0.5	0.0343	0.103	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	BT549_BREAST	0.16	0.5	0.1373	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	NEURL1B--C1orf101	5	6	NEURL1B	1172	chr5:172068440:+	C1orf101	21840	chr1:244662304:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0.0515	NEURL1B->chr5:172068269-172118543:+,neuralized_E3_ubiquitin_protein_ligase_1B,C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101	BT549_BREAST	1	1	0.0944	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	NEURL1B--C1orf101	5	5	NEURL1B	1172	chr5:172068440:+	C1orf101	23969	chr1:244681894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0.0429	NEURL1B->chr5:172068269-172118543:+,neuralized_E3_ubiquitin_protein_ligase_1B,C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101	BT549_BREAST	1	1	0.0858	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	NEURL1B--C1orf101	6	1	NEURL1B	1172	chr5:172068440:+	C1orf101	26569	chr1:244723970:+	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0515	0.0086	NEURL1B->chr5:172068269-172118543:+,neuralized_E3_ubiquitin_protein_ligase_1B,C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101	BT549_BREAST	0.78	1	0.0601	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	NEURL1B--DESI2	4	8	NEURL1B	1172	chr5:172068440:+	DESI2	20435	chr1:244868858:+	ONLY_REF_SPLICE	YES	0	27	1	0.31	0.0343	0.0686	NEURL1B->chr5:172068269-172118543:+,neuralized_E3_ubiquitin_protein_ligase_1B,DESI2->chr1:244816237-244872335:+,desumoylating_isopeptidase_2	BT549_BREAST	0.31	1	0.1029	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	ARIH2--SOS1	1	17	ARIH2	10830	chr3:48986529:+	SOS1	52613	chr2:39216455:-	ONLY_REF_SPLICE	YES	82	9	0.18	0.67	0.0086	0.1459	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	BT549_BREAST	0.18	0.67	0.1545	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	DNAJC8--ATRX	5	0	DNAJC8	10740	chr1:28527831:-	ATRX	44601	chrX:76855030:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	DNAJC8->DnaJ_heat_shock_protein_family_(Hsp40)_member_C8,chr1:28525967-28559536:-,ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-	BT549_BREAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	SFPQ--MTATP6P1	5	0	SFPQ	1512	chr1:35658238:-	MTATP6P1	19209	chr1:569360:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	BT549_BREAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	CCDC174--ZCCHC7	4	1	CCDC174	5556	chr3:14703214:+	ZCCHC7	24373	chr9:37302185:+	ONLY_REF_SPLICE	YES	17	32	0.23	0.14	0.0343	0.0086	CCDC174->chr3:14693271-14714166:+,coiled-coil_domain_containing_174,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	BT549_BREAST	0.14	0.23	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	GOLT1B--UNKL	4	1	GOLT1B	1168	chr12:21654882:+	UNKL	32466	chr16:1421612:-	ONLY_REF_SPLICE	YES	94	1	0.05	0.83	0.0343	0.0086	GOLT1B->chr12:21654715-21671342:+,golgi_transport_1B,UNKL->chr16:1413206-1464752:-,unkempt_family_like_zinc_finger	BT549_BREAST	0.05	0.83	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	NRP1--LINC00838	4	0	NRP1	8745	chr10:33542956:-	LINC00838	37213	chr10:34056274:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	NRP1->chr10:33466420-33625190:-,neuropilin_1,LINC00838->chr10:34048641-34061586:-,long_intergenic_non-protein_coding_RNA_838	BT549_BREAST	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	NEURL1B--C1orf101	3	3	NEURL1B	1172	chr5:172068440:+	C1orf101	25076	chr1:244715624:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0257	0.0257	NEURL1B->chr5:172068269-172118543:+,neuralized_E3_ubiquitin_protein_ligase_1B,C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101	BT549_BREAST	0.86	1	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	AC142528.1--RPS18	3	0	AC142528.1	1202	chr2:3523247:+	RPS18	6056	chr6:33239868:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	AC142528.1->chr2:3523046-3526968:+,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	IL27RA--EXT1	3	0	IL27RA	10040	chr19:14163314:+	EXT1	14082	chr8:119123480:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	IL27RA->chr19:14142560-14163743:+,interleukin_27_receptor_subunit_alpha,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	IPO4--SCAMP3	3	0	IPO4	6167	chr14:24653004:-	SCAMP3	12996	chr1:155231972:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	IPO4->chr14:24649425-24658170:-,importin_4,SCAMP3->chr1:155225770-155232221:-,secretory_carrier_membrane_protein_3	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	PALD1--PEX19	3	0	PALD1	11582	chr10:72299467:+	PEX19	27826	chr1:160249415:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	PALD1->chr10:72238577-72328205:+,phosphatase_domain_containing,_paladin_1,PEX19->chr1:160246602-160256138:-,peroxisomal_biogenesis_factor_19	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	PELP1--ATP5F1	3	0	PELP1	10708	chr17:4575423:-	ATP5F1	19400	chr1:112002200:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	PELP1->chr17:4574679-4607632:-,proline,_glutamate_and_leucine_rich_protein_1,ATP5F1->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_B1,chr1:111991486-112005395:+	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	PSMD14--RPSA	3	0	PSMD14	17510	chr2:162265410:+	RPSA	22956	chr3:39449209:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14,RPSA->chr3:39448180-39454033:+,ribosomal_protein_SA	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	RPL27--LAPTM4B	3	0	RPL27	2719	chr17:41152008:+	LAPTM4B	14357	chr8:98863628:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	RPL27->chr17:41150290-41154976:+,ribosomal_protein_L27,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	TJAP1--USP13	3	0	TJAP1	11083	chr6:43472757:+	USP13	43149	chr3:179506624:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	TJAP1->chr6:43445261-43474294:+,tight_junction_associated_protein_1,USP13->chr3:179370543-179507189:+,ubiquitin_specific_peptidase_13_(isopeptidase_T-3)	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	TNKS1BP1--PDHA1	3	0	TNKS1BP1	15729	chr11:57068031:-	PDHA1	30893	chrX:19377046:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	TNKS1BP1->chr11:57067112-57092426:-,tankyrase_1_binding_protein_1,PDHA1->chrX:19362011-19379823:+,pyruvate_dehydrogenase_(lipoamide)_alpha_1	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	ZFAS1--PARK7	3	0	ZFAS1	3117	chr20:47897107:+	PARK7	17620	chr1:8045143:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,PARK7->Parkinsonism_associated_deglycase,chr1:8014351-8045565:+	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	AC027763.2--UAP1	2	0	AC027763.2	1154	chr17:6915515:-	UAP1	20117	chr1:162551077:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	AC027763.2->chr17:6779954-6915668:-,UAP1->UDP-N-acetylglucosamine_pyrophosphorylase_1,chr1:162531323-162569627:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	AKT1--UBE2B	2	0	AKT1	6360	chr14:105246425:-	UBE2B	27483	chr5:133725916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	AKT1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr14:105235686-105262088:-,v-akt_murine_thymoma_viral_oncogene_homolog_1,UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	C7orf60--ZC3HC1	2	0	C7orf60	3917	chr7:112555361:-	ZC3HC1	15440	chr7:129688984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	C7orf60->chr7:112459202-112579971:-,ZC3HC1->chr7:129658126-129691291:-,zinc_finger_C3HC-type_containing_1	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	CCDC14--MRPL3	2	0	CCDC14	1574	chr3:123679991:-	MRPL3	32635	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	CCM2--GPC1	2	0	CCM2	1889	chr7:45039962:+	GPC1	27344	chr2:241398447:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	CCM2->CCM2_scaffolding_protein,chr7:45039074-45116068:+,GPC1->chr2:241375088-241407493:+,glypican_1	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	DVL2--FAM20A	2	0	DVL2	4439	chr17:7132288:-	FAM20A	13195	chr17:66586490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	DVL2->chr17:7128660-7137864:-,dishevelled_segment_polarity_protein_2,FAM20A->chr17:66531254-66597530:-,family_with_sequence_similarity_20_member_A	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	ERBB2IP--KIF2A	2	0	ERBB2IP	3473	chr5:65284510:+	KIF2A	57426	chr5:61669514:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	ERBB2IP->chr5:65222303-65378377:+,KIF2A->chr5:61601989-61833076:+,kinesin_heavy_chain_member_2A	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	HLCS--PRKDC	2	0	HLCS	15849	chr21:38137313:-	PRKDC	39660	chr8:48843347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase,PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	KLRG1--ABI1	2	0	KLRG1	1193	chr12:9102832:+	ABI1	15386	chr10:27112234:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	KLRG1->chr12:9102640-9163356:+,killer_cell_lectin_like_receptor_G1,ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	MAP4--PIP4K2A	2	0	MAP4	28587	chr3:47912303:-	PIP4K2A	46954	chr10:22898646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	MLF1IP--SDHA	2	0	MLF1IP	4003	chr4:185650072:-	SDHA	26600	chr5:228300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	MLF1IP->chr4:185615772-185655287:-,SDHA->ArcherDX_panel,FoundationOne_panel,chr5:218356-256815:+,succinate_dehydrogenase_complex_flavoprotein_subunit_A	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	NCOA3--FAM156B	2	0	NCOA3	1163	chr20:46130763:+	FAM156B	33047	chrX:52928085:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,FAM156B->chrX:52920336-52937587:+,family_with_sequence_similarity_156_member_B	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	PCNT--DHFR	2	0	PCNT	4674	chr21:47754682:+	DHFR	60225	chr5:79924984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	PCNT->chr21:47744036-47865682:+,pericentrin,DHFR->chr5:79922047-79950802:-,dihydrofolate_reductase	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	PON2--LINC01006	2	0	PON2	5645	chr7:95045554:-	LINC01006	24018	chr7:156265405:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	PON2->chr7:95034175-95064510:-,paraoxonase_2,LINC01006->chr7:156264890-156433286:-,long_intergenic_non-protein_coding_RNA_1006	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	RNF216--PKNOX1	2	0	RNF216	8751	chr7:5792477:-	PKNOX1	37002	chr21:44427601:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216,PKNOX1->Oncogene{Bushman},PBX/knotted_1_homeobox_1,chr21:44394620-44453691:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	RP11-390F4.6--DGCR8	2	0	RP11-390F4.6	1130	chr9:6646085:+	DGCR8	10619	chr22:20077499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	RP11-390F4.6->chr9:6645956-6670635:+,DGCR8->DGCR8_microprocessor_complex_subunit,chr22:20067755-20099400:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	SFPQ--RABGAP1L	2	0	SFPQ	1927	chr1:35657823:-	RABGAP1L	40997	chr1:174606513:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	SNRPA1--EFTUD1	2	0	SNRPA1	1186	chr15:101835302:-	EFTUD1	37725	chr15:82422902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',EFTUD1->chr15:82422571-82555104:-	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	SPEN--EXO1	2	0	SPEN	1287	chr1:16174645:+	EXO1	42706	chr1:242042051:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,EXO1->chr1:242011269-242058450:+,exonuclease_1	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	SYT17--PAPD7	2	0	SYT17	1691	chr16:19179983:+	PAPD7	21154	chr5:6737623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	SYT17->chr16:19179293-19279652:+,synaptotagmin_17,PAPD7->PAP_associated_domain_containing_7,chr5:6714718-6757161:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	TNS3--GNAS	2	0	TNS3	7594	chr7:47568634:-	GNAS	64464	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	TNS3->chr7:47314752-47622156:-,tensin_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	TRA2B--ACOT7	2	0	TRA2B	1312	chr3:185655613:-	ACOT7	37606	chr1:6355040:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	TRIP12--LUC7L2	2	0	TRIP12	36526	chr2:230650473:-	LUC7L2	54885	chr7:139083345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	TSSK3--H2AFV	2	0	TSSK3	2180	chr1:32818403:+	H2AFV	13994	chr7:44874161:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	TSSK3->chr1:32817122-32829913:+,testis_specific_serine_kinase_3,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	UBE2G2--GGCT	2	0	UBE2G2	7524	chr21:46197214:-	GGCT	23299	chr7:30536851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	UBE2G2->chr21:46188955-46221934:-,ubiquitin_conjugating_enzyme_E2_G2,GGCT->chr7:30536237-30591095:-,gamma-glutamylcyclotransferase	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	USO1--UBE2D2	2	0	USO1	1293	chr4:76650069:+	UBE2D2	31421	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	USO1->USO1_vesicle_transport_factor,chr4:76649777-76735382:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	BT549_BREAST	1	1	0.0172	TRUE	1	1	0	8	1	TRUE	ACH-000288
BT549_BREAST	YBEY--NOP58	2	0	YBEY	1787	chr21:47707037:+	NOP58	19804	chr2:203160397:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	YBEY->chr21:47706251-47717665:+,ybeY_metallopeptidase_(putative),NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	ZCCHC8--SLC25A37	2	0	ZCCHC8	13554	chr12:122962388:-	SLC25A37	26338	chr8:23425835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	ZCCHC8->chr12:122957417-122985518:-,zinc_finger_CCHC-type_containing_8,SLC25A37->chr8:23386318-23432976:+,solute_carrier_family_25_member_37	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	ZNF606--TCOF1	2	0	ZNF606	4517	chr19:58511176:-	TCOF1	22114	chr5:149751569:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	ZNF606->chr19:58488421-58514717:-,zinc_finger_protein_606,TCOF1->chr5:149737202-149779871:+,treacle_ribosome_biogenesis_factor_1	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	100	60	KIAA0125	1334	chr14:106384171:+	IGH@	124905	chr14:106175001:-	INCL_NON_REF_SPLICE	YES	30	149	0.84	0.52	1.0335	0.6201	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.84	1.6536	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	28	34	KIAA0125	1334	chr14:106384171:+	IGH@	136826	chr14:106054731:-	INCL_NON_REF_SPLICE	YES	30	136	0.67	0.31	0.2894	0.3514	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.67	0.6408	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	13	76	KIAA0125	6521	chr14:106390816:+	IGH@	124903	chr14:106175003:-	INCL_NON_REF_SPLICE	NO	0	150	1	0.37	0.1344	0.7854	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	1	0.9198	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	10	71	KIAA0125	1536	chr14:106384373:+	IGH@	124905	chr14:106175001:-	INCL_NON_REF_SPLICE	YES	2	149	0.98	0.35	0.1033	0.7338	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.98	0.8371	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAFAH1B2--FOXR1	21	18	PAFAH1B2	2240	chr11:117023244:+	FOXR1	18967	chr11:118849492:+	ONLY_REF_SPLICE	YES	68	2	0.36	0.95	0.217	0.186	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.95	0.403	TRUE	0	0	0	2	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	6	73	KIAA0125	1760	chr14:106384597:+	IGH@	124905	chr14:106175001:-	INCL_NON_REF_SPLICE	YES	0	149	1	0.35	0.062	0.7544	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	0.8164	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPV3--OR1A1	19	2	TRPV3	2441	chr17:3458026:-	OR1A1	31403	chr17:3119781:+	INCL_NON_REF_SPLICE	YES	59	0	0.26	1	0.1964	0.0207	TRPV3->chr17:3413796-3461289:-,transient_receptor_potential_cation_channel_subfamily_V_member_3,OR1A1->chr17:3118915-3119844:+,olfactory_receptor_family_1_subfamily_A_member_1	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.2171	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	6	44	KIAA0125	1536	chr14:106384373:+	IGH@	136826	chr14:106054731:-	INCL_NON_REF_SPLICE	YES	2	136	0.96	0.27	0.062	0.4547	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.96	0.5167	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	5	46	KIAA0125	1760	chr14:106384597:+	IGH@	136826	chr14:106054731:-	INCL_NON_REF_SPLICE	YES	0	136	1	0.27	0.0517	0.4754	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.5271	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	4	34	KIAA0125	1443	chr14:106384280:+	IGH@	136826	chr14:106054731:-	INCL_NON_REF_SPLICE	YES	28	136	0.58	0.22	0.0413	0.3514	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.58	0.3927	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAFAH1B2--FOXR1	9	10	PAFAH1B2	1152	chr11:117015134:+	FOXR1	18967	chr11:118849492:+	ONLY_REF_SPLICE	YES	37	2	0.34	0.9	0.093	0.1033	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.9	0.1963	TRUE	0	0	0	3	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPAT--RPA3-AS1	10	2	NPAT	11179	chr11:108055959:-	RPA3-AS1	36053	chr7:7916912:+	ONLY_REF_SPLICE	YES	13	15	0.48	0.44	0.1033	0.0207	NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription,RPA3-AS1->chr7:7680342-8043689:+	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.48	0.124	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBASH3B--BCL9L	6	1	UBASH3B	1536	chr11:122526918:+	BCL9L	32125	chr11:118780724:-	ONLY_REF_SPLICE	YES	40	5	0.15	0.58	0.062	0.0103	UBASH3B->chr11:122526383-122685181:+,ubiquitin_associated_and_SH3_domain_containing_B,BCL9L->B-cell_CLL/lymphoma_9-like,chr11:118764584-118796317:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.58	0.0723	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--PBX1	4	7	RABGAP1L	13819	chr1:174247917:+	PBX1	99814	chr1:164853779:+	ONLY_REF_SPLICE	YES	69	0	0.14	1	0.0413	0.0723	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.1136	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAD1L1--RP11-406D1.2	5	1	MAD1L1	12207	chr7:2252847:-	RP11-406D1.2	45212	chr11:28003904:-	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0517	0.0103	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,RP11-406D1.2->chr11:28000216-28041122:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.062	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	3	5	AP003900.6	1122	chr21:11169841:+	AC011718.2	10100	chr22:20656924:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.031	0.0517	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.0827	TRUE	0	0	0	11	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAD1L1--RP11-406D1.2	3	0	MAD1L1	12207	chr7:2252847:-	RP11-406D1.2	46392	chr11:28000662:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,RP11-406D1.2->chr11:28000216-28041122:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LDLRAP1--CAPZB	2	0	LDLRAP1	6006	chr1:25883758:+	CAPZB	20352	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	LDLRAP1->chr1:25870071-25895377:+,low_density_lipoprotein_receptor_adaptor_protein_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAU1--RP11-728G15.1	2	0	STAU1	1252	chr20:47804653:-	RP11-728G15.1	24419	chr12:121068299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1,RP11-728G15.1->chr12:121067908-121079394:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB1--BMI1	2	0	ZEB1	1798	chr10:31608221:+	BMI1	31789	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0207	TRUE	0	0	0	4	0	TRUE	ACH-000453
DMS114_LUNG	ZFAND3--C6orf89	61	51	ZFAND3	2559	chr6:37897775:+	C6orf89	26510	chr6:36882060:+	ONLY_REF_SPLICE	YES	223	141	0.33	0.44	0.7639	0.6387	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,C6orf89->chr6:36839646-36896740:+,chromosome_6_open_reading_frame_89	DMS114_LUNG	0.33	0.44	1.4026	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	HYAL2--TMEM115	41	25	HYAL2	4951	chr3:50356387:-	TMEM115	11516	chr3:50392978:-	ONLY_REF_SPLICE	YES	397	153	0.14	0.3	0.5134	0.3131	LOCAL_REARRANGEMENT:-:[31843],HYAL2->Oncogene{Bushman},chr3:50355221-50360337:-,hyaluronoglucosaminidase_2,TMEM115->chr3:50392180-50397041:-,transmembrane_protein_115	DMS114_LUNG	0.14	0.3	0.8265	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	HYAL2--TMEM115	9	28	HYAL2	5659	chr3:50355679:-	TMEM115	11516	chr3:50392978:-	INCL_NON_REF_SPLICE	YES	435	153	0.08	0.19	0.1127	0.3506	LOCAL_REARRANGEMENT:-:[31843],HYAL2->Oncogene{Bushman},chr3:50355221-50360337:-,hyaluronoglucosaminidase_2,TMEM115->chr3:50392180-50397041:-,transmembrane_protein_115	DMS114_LUNG	0.08	0.19	0.4633	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	ZFAND3--C6orf89	7	24	ZFAND3	1518	chr6:37787792:+	C6orf89	26510	chr6:36882060:+	ONLY_REF_SPLICE	YES	124	141	0.2	0.18	0.0877	0.3005	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,C6orf89->chr6:36839646-36896740:+,chromosome_6_open_reading_frame_89	DMS114_LUNG	0.18	0.2	0.3882	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	HS1BP3--C2orf43	11	6	HS1BP3	11314	chr2:20823656:-	C2orf43	28935	chr2:20901412:-	ONLY_REF_SPLICE	YES	219	57	0.07	0.23	0.1378	0.0751	LOCAL_REARRANGEMENT:-:[32939],HS1BP3->HCLS1_binding_protein_3,chr2:20760208-20850849:-,C2orf43->chr2:20883788-21022882:-	DMS114_LUNG	0.07	0.23	0.2129	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	BOK--FARP2	9	6	BOK	5565	chr2:242512000:+	FARP2	42431	chr2:242415272:+	INCL_NON_REF_SPLICE	YES	35	12	0.3	0.56	0.1127	0.0751	LOCAL_REARRANGEMENT:+:[63880],BOK->BCL2-related_ovarian_killer,Oncogene{Bushman},chr2:242498136-242513546:+,FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+	DMS114_LUNG	0.3	0.56	0.1878	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	FAM13B--SIL1	8	10	FAM13B	4417	chr5:137368471:-	SIL1	45441	chr5:138463542:-	ONLY_REF_SPLICE	YES	121	39	0.13	0.32	0.1002	0.1252	FAM13B->chr5:137273649-137387650:-,family_with_sequence_similarity_13_member_B,SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-	DMS114_LUNG	0.13	0.32	0.2254	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	BMPR2--AC010105.1	8	2	BMPR2	1615	chr2:203242273:+	AC010105.1	30029	chr2:82749152:-	ONLY_REF_SPLICE	YES	83	0	0.11	1	0.1002	0.025	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,AC010105.1->chr2:82706252-82765835:-	DMS114_LUNG	0.11	1	0.1252	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	GABPB1--C15orf52	7	3	GABPB1	9733	chr15:50592986:-	C15orf52	19882	chr15:40632216:-	ONLY_REF_SPLICE	YES	133	3	0.07	0.77	0.0877	0.0376	GABPB1->GA_binding_protein_transcription_factor_beta_subunit_1,Oncogene{Bushman},chr15:50569389-50647605:-,C15orf52->chr15:40623653-40633168:-,chromosome_15_open_reading_frame_52	DMS114_LUNG	0.07	0.77	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	AC011288.2--SCIN	6	6	AC011288.2	3123	chr7:13257293:+	SCIN	20090	chr7:12662426:+	ONLY_REF_SPLICE	YES	0	3	1	0.8	0.0751	0.0751	AC011288.2->chr7:13141016-13743774:+,SCIN->chr7:12610203-12693228:+,scinderin	DMS114_LUNG	0.8	1	0.1502	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	CCDC43--MAPT	4	13	CCDC43	1230	chr17:42766918:-	MAPT	35039	chr17:44091609:+	ONLY_REF_SPLICE	YES	186	49	0.08	0.26	0.0501	0.1628	CCDC43->chr17:42750437-42767147:-,coiled-coil_domain_containing_43,MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau	DMS114_LUNG	0.08	0.26	0.2129	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	TMCC2--FBXO3	5	2	TMCC2	4534	chr1:205211172:+	FBXO3	37263	chr11:33763630:-	ONLY_REF_SPLICE	YES	8	42	0.47	0.14	0.0626	0.025	TMCC2->chr1:205197304-205242471:+,transmembrane_and_coiled-coil_domain_family_2,FBXO3->F-box_protein_3,chr11:33762485-33796089:-	DMS114_LUNG	0.14	0.47	0.0876	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	LCP1--FAR1	4	4	LCP1	24608	chr13:46700482:-	FAR1	45544	chr11:13753280:+	INCL_NON_REF_SPLICE	YES	0	30	1	0.21	0.0501	0.0501	LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1,FAR1->chr11:13690217-13753893:+,fatty_acyl-CoA_reductase_1	DMS114_LUNG	0.21	1	0.1002	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	BMPR2--AC010105.1	4	2	BMPR2	1615	chr2:203242273:+	AC010105.1	31098	chr2:82706432:-	ONLY_REF_SPLICE	YES	83	0	0.07	1	0.0501	0.025	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,AC010105.1->chr2:82706252-82765835:-	DMS114_LUNG	0.07	1	0.0751	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	FAR1--LCP1	3	6	FAR1	18493	chr11:13753264:+	LCP1	45495	chr13:46700717:-	INCL_NON_REF_SPLICE	YES	34	1	0.21	0.9	0.0376	0.0751	FAR1->chr11:13690217-13753893:+,fatty_acyl-CoA_reductase_1,LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1	DMS114_LUNG	0.21	0.9	0.1127	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	ATP9A--ZFP64	4	0	ATP9A	1333	chr20:50384841:-	ZFP64	52878	chr20:50715126:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0501	0	GTEx&tcga_normals:1/3694=0.03%,ATP9A->ATPase_phospholipid_transporting_9A_(putative),chr20:50213053-50385173:-,ZFP64->Oncogene{Bushman},ZFP64_zinc_finger_protein,chr20:50668202-50820847:-	DMS114_LUNG	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	SFMBT2--ITIH5	3	4	SFMBT2	6240	chr10:7409611:-	ITIH5	50069	chr10:7628032:-	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.0376	0.0501	SFMBT2->Oncogene{Bushman},Scm-like_with_four_mbt_domains_2,chr10:7200586-7453450:-,ITIH5->chr10:7601232-7708961:-,inter-alpha-trypsin_inhibitor_heavy_chain_family_member_5	DMS114_LUNG	0.88	0.88	0.0877	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	LPHN2--RP5-887A10.1	3	3	LPHN2	1350	chr1:81772194:+	RP5-887A10.1	45635	chr1:81109910:+	ONLY_REF_SPLICE	YES	81	0	0.07	1	0.0376	0.0376	LPHN2->Oncogene{Bushman},chr1:81771845-82458120:+,RP5-887A10.1->chr1:81001440-81112473:+	DMS114_LUNG	0.07	1	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	ZNF420--HKR1	2	7	ZNF420	5639	chr19:37582023:+	HKR1	27721	chr19:37838092:+	ONLY_REF_SPLICE	YES	49	76	0.16	0.11	0.025	0.0877	HGNC_GENEFAM,PROTCLUST,ZNF420->chr19:37498759-37621216:+,zinc_finger_protein_420,HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+	DMS114_LUNG	0.11	0.16	0.1127	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	RP5-940J5.3--CHD4	3	0	RP5-940J5.3	1035	chr12:6642630:-	CHD4	28069	chr12:6680198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0376	0	LOCAL_REARRANGEMENT:-:[36585],RP5-940J5.3->chr12:6641456-6642664:-,CHD4->ArcherDX_panel,FoundationOne_panel,chr12:6679249-6716642:-,chromodomain_helicase_DNA_binding_protein_4	DMS114_LUNG	1	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	EXT1--SAMD12	2	3	EXT1	2769	chr8:119122324:-	SAMD12	24520	chr8:119593132:-	ONLY_REF_SPLICE	YES	51	0	0.09	1	0.025	0.0376	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	DMS114_LUNG	0.09	1	0.0626	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	BCAS3--NFATC2	2	1	BCAS3	11036	chr17:58885437:+	NFATC2	65353	chr20:50092197:-	ONLY_REF_SPLICE	YES	44	6	0.06	0.33	0.025	0.0125	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,NFATC2->Oncogene{Bushman},chr20:50003494-50179370:-,nuclear_factor_of_activated_T-cells_2	DMS114_LUNG	0.06	0.33	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	AP000487.5--LUC7L2	2	0	AP000487.5	1391	chr11:70244204:-	LUC7L2	19986	chr7:139102284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	AP000487.5->chr11:70218352-70244594:-,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	ASH1L--CSDE1	2	0	ASH1L	31462	chr1:155311727:-	CSDE1	47578	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	BTBD10--PSMA1	2	0	BTBD10	1206	chr11:13484639:-	PSMA1	21924	chr11:14540587:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	BTBD10->BTB_domain_containing_10,chr11:13409548-13484844:-,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	CDCA4--EIF3B	2	0	CDCA4	1150	chr14:105487336:-	EIF3B	20553	chr7:2415024:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CDCA4->cell_division_cycle_associated_4,chr14:105475910-105487485:-,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	CIZ1--CSDE1	2	0	CIZ1	13699	chr9:130931331:-	CSDE1	27651	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	CNKSR2--TMEM67	2	0	CNKSR2	9361	chrX:21519706:+	TMEM67	32014	chr8:94767248:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CNKSR2->chrX:21392536-21672813:+,connector_enhancer_of_kinase_suppressor_of_Ras_2,TMEM67->chr8:94767072-94831462:+,transmembrane_protein_67	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	DCDC1--PRR5L	1	4	DCDC1	16050	chr11:31149016:-	PRR5L	89834	chr11:36483892:+	ONLY_REF_SPLICE	YES	87	1	0.05	0.83	0.0125	0.0501	DCDC1->chr11:30851916-31391357:-,doublecortin_domain_containing_1,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	DMS114_LUNG	0.05	0.83	0.0626	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	EIF4G2--WDR6	2	0	EIF4G2	1406	chr11:10830252:-	WDR6	19239	chr3:49049068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2,WDR6->WD_repeat_domain_6,chr3:49044495-49053386:+	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	FAM172A--KIAA0825	2	0	FAM172A	4518	chr5:93386436:-	KIAA0825	50323	chr5:93489829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:-:[41267],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,KIAA0825->KIAA0825,chr5:93488671-93954309:-	DMS114_LUNG	1	1	0.025	TRUE	0	1	0	2	1	TRUE	ACH-000530
DMS114_LUNG	METTL16--USE1	2	0	METTL16	2261	chr17:2405498:-	USE1	29538	chr19:17330022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	METTL16->chr17:2308856-2415185:-,methyltransferase_like_16,USE1->chr19:17326155-17330638:+,unconventional_SNARE_in_the_ER_1	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	NCAPD2--ZNF384	2	0	NCAPD2	2870	chr12:6604391:+	ZNF384	32433	chr12:6778355:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	NCAPD2->Oncogene{Bushman},chr12:6602522-6641121:+,non-SMC_condensin_I_complex_subunit_D2,ZNF384->Oncogene{Bushman},chr12:6775643-6798738:-,zinc_finger_protein_384	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	POP1--RP11-96B2.1	2	0	POP1	1094	chr8:99129618:+	RP11-96B2.1	23231	chr8:123499705:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	POP1->POP1_homolog,_ribonuclease_P/MRP_subunit,chr8:99129525-99172062:+,RP11-96B2.1->chr8:123497754-123502054:-	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	SAE1--AC073046.25	2	0	SAE1	11514	chr19:47673180:+	AC073046.25	21207	chr2:74213107:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,AC073046.25->chr2:74212259-74213470:+	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	SCAF11--SLC38A1	2	0	SCAF11	2468	chr12:46384136:-	SLC38A1	39337	chr12:46623422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-,SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	TMEM8A--SRRM2	2	0	TMEM8A	3640	chr16:431701:-	SRRM2	17895	chr16:2807473:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A,SRRM2->chr16:2802330-2822539:+,serine/arginine_repetitive_matrix_2	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	TUB--HNRNPH1	2	0	TUB	12982	chr11:8122544:+	HNRNPH1	30550	chr5:179044111:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	TUB->chr11:8040791-8127659:+,tubby_bipartite_transcription_factor,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	VPS41--MAN1A2	2	0	VPS41	6507	chr7:38902145:-	MAN1A2	47795	chr1:117963191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	VPS41->VPS41,_HOPS_complex_subunit,chr7:38762563-38971994:-,MAN1A2->chr1:117910071-118071494:+,mannosidase_alpha_class_1A_member_2	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	ZNF217--BCAS1	2	0	ZNF217	4711	chr20:52210295:-	BCAS1	35027	chr20:52558063:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	DCDC1--PRR5L	1	3	DCDC1	14853	chr11:31159239:-	PRR5L	89834	chr11:36483892:+	ONLY_REF_SPLICE	NO	95	1	0.04	0.8	0.0125	0.0376	DCDC1->chr11:30851916-31391357:-,doublecortin_domain_containing_1,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	DMS114_LUNG	0.04	0.8	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	NUDT7--RP11-538I12.3	1	3	NUDT7	2258	chr16:77759481:+	RP11-538I12.3	10637	chr16:77323173:+	ONLY_REF_SPLICE	YES	93	0	0.04	1	0.0125	0.0376	NUDT7->chr16:77756411-77776157:+,nudix_hydrolase_7,RP11-538I12.3->chr16:77268774-77324831:+	DMS114_LUNG	0.04	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	GPR124--CTA-392C11.1	1	2	GPR124	3841	chr8:37672485:+	CTA-392C11.1	23533	chr8:40191472:-	ONLY_REF_SPLICE	YES	45	0	0.06	1	0.0125	0.025	GPR124->ArcherDX_panel,FoundationOne_panel,chr8:37641709-37702414:+,CTA-392C11.1->chr8:40156260-40200921:-	DMS114_LUNG	0.06	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	LINC01014--RP11-91K9.1	1	2	LINC01014	1175	chr3:178137163:+	RP11-91K9.1	8052	chr3:177613401:+	ONLY_REF_SPLICE	NO	2	0	0.6	1	0.0125	0.025	LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,RP11-91K9.1->chr3:177534653-177617012:+	DMS114_LUNG	0.6	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000530
TE441T_SOFT_TISSUE	AHNAK--BSCL2	72	42	AHNAK	7225	chr11:62301133:-	BSCL2	39296	chr11:62460269:-	INCL_NON_REF_SPLICE	YES	30	5	0.79	0.96	1.3479	0.7863	AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,BSCL2->Berardinelli-Seip_congenital_lipodystrophy_2_(seipin),chr11:62457747-62477317:-	TE441T_SOFT_TISSUE	0.79	0.96	2.1342	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	CIC--DUX4L11	60	13	CIC	17967	chr19:42799276:+	DUX4L11	22897	chr10:135484918:+	INCL_NON_REF_SPLICE	YES	4	0	0.95	1	1.1233	0.2434	CIC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},capicua_transcriptional_repressor,chr19:42772689-42799949:+,DUX4L11->chr10:135483662-135488584:+,double_homeobox_4_like_11	TE441T_SOFT_TISSUE	0.95	1	1.3667	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	ICOSLG--BLVRB	24	0	ICOSLG	9127	chr21:45647857:-	BLVRB	18889	chr19:40963905:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4493	0	ICOSLG->chr21:45642874-45660849:-,inducible_T-cell_co-stimulator_ligand,BLVRB->biliverdin_reductase_B,chr19:40953696-40971747:-	TE441T_SOFT_TISSUE	1	1	0.4493	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	CIC--DUX4L11	18	0	CIC	17967	chr19:42799276:+	DUX4L11	24147	chr10:135488227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.337	0	CIC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},capicua_transcriptional_repressor,chr19:42772689-42799949:+,DUX4L11->chr10:135483662-135488584:+,double_homeobox_4_like_11	TE441T_SOFT_TISSUE	1	1	0.337	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	TNNT1--CALR	4	0	TNNT1	6739	chr19:55652575:-	CALR	18653	chr19:13054692:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0749	0	TNNT1->chr19:55644162-55660722:-,troponin_T1,_slow_skeletal_type,CALR->calreticulin,chr19:13049392-13055303:+	TE441T_SOFT_TISSUE	1	1	0.0749	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	C20orf96--GFRA2	3	0	C20orf96	8854	chr20:251728:-	GFRA2	16717	chr8:21640389:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	C20orf96->chr20:251504-271390:-,chromosome_20_open_reading_frame_96,GFRA2->GDNF_family_receptor_alpha_2,chr8:21547915-21669869:-	TE441T_SOFT_TISSUE	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	MDGA1--ILF3	3	0	MDGA1	6984	chr6:37623565:-	ILF3	49377	chr19:10801858:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	MDGA1->MAM_domain_containing_glycosylphosphatidylinositol_anchor_1,chr6:37600284-37667082:-,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	TE441T_SOFT_TISSUE	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	MXD4--P4HB	3	0	MXD4	11706	chr4:2249858:-	P4HB	20732	chr17:79805148:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	MXD4->MAX_dimerization_protein_4,chr4:2249159-2264021:-,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	TE441T_SOFT_TISSUE	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	POLE--AHNAK	3	0	POLE	32442	chr12:133210909:-	AHNAK	44368	chr11:62303999:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-	TE441T_SOFT_TISSUE	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	SURF4--SLC9A1	3	0	SURF4	2437	chr9:136234161:-	SLC9A1	25047	chr1:27425940:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	SURF4->chr9:136228325-136242970:-,surfeit_4,SLC9A1->chr1:27425306-27493472:-,solute_carrier_family_9_member_A1	TE441T_SOFT_TISSUE	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	TTLL12--OBSCN	3	0	TTLL12	9488	chr22:43568488:-	OBSCN	69543	chr1:228495020:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	TTLL12->chr22:43562628-43583139:-,tubulin_tyrosine_ligase_like_12,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	TE441T_SOFT_TISSUE	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	AHNAK--BSCL2	2	1	AHNAK	5883	chr11:62302475:-	BSCL2	39296	chr11:62460269:-	ONLY_REF_SPLICE	YES	63	5	0.05	0.38	0.0374	0.0187	AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,BSCL2->Berardinelli-Seip_congenital_lipodystrophy_2_(seipin),chr11:62457747-62477317:-	TE441T_SOFT_TISSUE	0.05	0.38	0.0561	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	CCM2--SEC31A	2	0	CCM2	1889	chr7:45039962:+	SEC31A	54637	chr4:83748785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	CCM2->CCM2_scaffolding_protein,chr7:45039074-45116068:+,SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	CLIC4--ZNF876P	2	0	CLIC4	1269	chr1:25072116:+	ZNF876P	17135	chr4:247349:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,ZNF876P->chr4:206399-249774:+,zinc_finger_protein_876,_pseudogene	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	FGFR1--TRIP12	2	0	FGFR1	9195	chr8:38314874:-	TRIP12	39042	chr2:230723547:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	MAN1B1--RPS27A	2	0	MAN1B1	3079	chr9:139983457:+	RPS27A	21924	chr2:55461967:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	MAN1B1->chr9:139981379-140003635:+,mannosidase_alpha_class_1B_member_1,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	MKLN1--SLC25A13	2	0	MKLN1	5544	chr7:131012756:+	SLC25A13	40610	chr7:95926263:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	MKLN1->chr7:130794855-131181395:+,muskelin_1,SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	OIP5-AS1--LPIN2	2	0	OIP5-AS1	3111	chr15:41578298:+	LPIN2	28318	chr18:2960847:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	OIP5-AS1->OIP5_antisense_RNA_1,chr15:41576188-41601901:+,LPIN2->chr18:2916992-3013313:-,lipin_2	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	PRICKLE4--ABCB6	2	0	PRICKLE4	7536	chr6:41755563:+	ABCB6	18946	chr2:220077213:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	PRICKLE4->chr6:41748087-41757879:+,prickle_planar_cell_polarity_protein_4,ABCB6->ATP_binding_cassette_subfamily_B_member_6_(Langereis_blood_group),chr2:220074490-220083712:-	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	RGS12--MPHOSPH8	2	0	RGS12	8553	chr4:3344780:+	MPHOSPH8	50366	chr13:20245346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	RGS12->chr4:3294755-3441640:+,regulator_of_G-protein_signaling_12,MPHOSPH8->M-phase_phosphoprotein_8,chr13:20207788-20247599:+	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	RTCB--ASCC3	2	0	RTCB	9425	chr22:32792061:-	ASCC3	63931	chr6:100957409:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	RTCB->RNA_2',3'-cyclic_phosphate_and_5'-OH_ligase,chr22:32783569-32808242:-,ASCC3->activating_signal_cointegrator_1_complex_subunit_3,chr6:100956070-101329248:-	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	SQLE--PAXBP1	2	0	SQLE	2198	chr8:126011936:+	PAXBP1	26296	chr21:34127664:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	SQLE->chr8:126010739-126034525:+,squalene_epoxidase,PAXBP1->PAX3_and_PAX7_binding_protein_1,chr21:34106210-34144169:-	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
SW1573_LUNG	NEAT1--LTBP3	104	31	NEAT1	19669	chr11:65208913:+	LTBP3	42363	chr11:65307352:-	INCL_NON_REF_SPLICE	YES	2	6	0.99	0.96	1.8062	0.5384	LOCAL_INVERSION:+:-:[93265],NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3	SW1573_LUNG	0.96	0.99	2.3446	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	NEAT1--LTBP3	26	12	NEAT1	1610	chr11:65190854:+	LTBP3	42363	chr11:65307352:-	ONLY_REF_SPLICE	YES	98	6	0.28	0.86	0.4516	0.2084	LOCAL_INVERSION:+:-:[93265],NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3	SW1573_LUNG	0.28	0.86	0.66	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	TCF7L1--TMSB10	22	11	TCF7L1	2041	chr2:85361573:+	TMSB10	20657	chr2:85133127:+	ONLY_REF_SPLICE	YES	3	1	0.92	0.97	0.3821	0.191	TCF7L1->chr2:85360533-85537511:+,transcription_factor_7_like_1,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10	SW1573_LUNG	0.92	0.97	0.5731	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	LARP4B--TSPAN33	13	9	LARP4B	5738	chr10:930387:-	TSPAN33	31290	chr7:128801520:+	ONLY_REF_SPLICE	YES	9	1	0.71	0.96	0.2258	0.1563	{Klijn_CCL:Lung=1},LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-,TSPAN33->chr7:128784712-128808671:+,tetraspanin_33	SW1573_LUNG	0.71	0.96	0.3821	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	NEAT1--LTBP3	3	35	NEAT1	20585	chr11:65209829:+	LTBP3	42317	chr11:65307398:-	INCL_NON_REF_SPLICE	YES	5	9	0.88	0.81	0.0521	0.6079	LOCAL_INVERSION:+:-:[93265],NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3	SW1573_LUNG	0.81	0.88	0.66	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	NEAT1--LTBP3	6	15	NEAT1	2241	chr11:65191485:+	LTBP3	42363	chr11:65307352:-	INCL_NON_REF_SPLICE	YES	45	6	0.32	0.78	0.1042	0.2605	LOCAL_INVERSION:+:-:[93265],NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3	SW1573_LUNG	0.32	0.78	0.3647	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	ME2--DCC	6	3	ME2	2380	chr18:48422298:+	DCC	41986	chr18:50683726:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1042	0.0521	ME2->chr18:48405419-48474691:+,malic_enzyme_2,DCC->DCC_netrin_1_receptor,Oncogene{Bushman},chr18:49866542-51057784:+	SW1573_LUNG	1	1	0.1563	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	LARP4B--TSPAN33	3	10	LARP4B	6809	chr10:915953:-	TSPAN33	31290	chr7:128801520:+	ONLY_REF_SPLICE	YES	11	1	0.54	0.93	0.0521	0.1737	{Klijn_CCL:Lung=1},LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-,TSPAN33->chr7:128784712-128808671:+,tetraspanin_33	SW1573_LUNG	0.54	0.93	0.2258	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	G3BP1--NNT	4	0	G3BP1	1992	chr5:151151597:+	NNT	49884	chr5:43700221:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0695	0	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,NNT->chr5:43602794-43707507:+,nicotinamide_nucleotide_transhydrogenase	SW1573_LUNG	1	1	0.0695	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	COPE--LONP1	3	0	COPE	8472	chr19:19014160:-	LONP1	22745	chr19:5707117:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	COPE->chr19:19010323-19030206:-,coatomer_protein_complex_subunit_epsilon,LONP1->chr19:5691845-5720583:-,lon_peptidase_1,_mitochondrial	SW1573_LUNG	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	MIF4GD--NHSL1	3	0	MIF4GD	1709	chr17:73266600:-	NHSL1	23529	chr6:138752681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	MIF4GD->MIF4G_domain_containing,chr17:73262309-73267308:-,NHSL1->NHS_like_1,chr6:138743180-139013708:-	SW1573_LUNG	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	PDXK--AP1M1	3	0	PDXK	26721	chr21:45179471:+	AP1M1	44804	chr19:16345333:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	PDXK->Oncogene{Bushman},chr21:45138975-45182188:+,pyridoxal_(pyridoxine,_vitamin_B6)_kinase,AP1M1->adaptor_related_protein_complex_1_mu_1_subunit,chr19:16308389-16346160:+	SW1573_LUNG	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	PTK2--PON2	3	0	PTK2	47959	chr8:141710990:-	PON2	72681	chr7:95041789:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0521	0	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,PON2->chr7:95034175-95064510:-,paraoxonase_2	SW1573_LUNG	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	RP11-69I8.3--CDKN1A	3	0	RP11-69I8.3	1258	chr6:132272343:+	CDKN1A	11243	chr6:36651951:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	RP11-69I8.3->chr6:132272086-132398533:+,CDKN1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:36644305-36655116:+,cyclin-dependent_kinase_inhibitor_1A	SW1573_LUNG	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	HAS3--TANGO6	2	1	HAS3	5870	chr16:69147445:+	TANGO6	37805	chr16:69074211:+	ONLY_REF_SPLICE	YES	4	5	0.43	0.38	0.0347	0.0174	LOCAL_REARRANGEMENT:+:[20384],HAS3->chr16:69139467-69152622:+,hyaluronan_synthase_3,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	SW1573_LUNG	0.38	0.43	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	APLP2--BSCL2	2	0	APLP2	10507	chr11:129992408:+	BSCL2	31501	chr11:62474796:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+,BSCL2->Berardinelli-Seip_congenital_lipodystrophy_2_(seipin),chr11:62457747-62477317:-	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	BMI1--LTBP3	2	0	BMI1	1486	chr10:22610625:+	LTBP3	27384	chr11:65307352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+,LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	C15orf40--RPLP2	2	0	C15orf40	3533	chr15:83677300:-	RPLP2	16346	chr11:812535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	C15orf40->chr15:83657193-83680393:-,chromosome_15_open_reading_frame_40,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	C4orf36--SPATS2	2	0	C4orf36	4981	chr4:87853374:-	SPATS2	36156	chr12:49893853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Whole_Blood=1,Colon_-_Transverse=1},C4orf36->chr4:87797358-87857354:-,chromosome_4_open_reading_frame_36,SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2	SW1573_LUNG	1	1	0.0347	TRUE	0	1	0	1	1	TRUE	ACH-000677
SW1573_LUNG	CHST11--WNT5A	2	0	CHST11	2941	chr12:104851292:+	WNT5A	17496	chr3:55514946:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,WNT5A->Oncogene{Bushman},Wnt_family_member_5A,chr3:55499743-55523973:-	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	FAM120A--ERP44	2	0	FAM120A	1668	chr9:96214671:+	ERP44	38933	chr9:102747351:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	FAM120A->chr9:96214004-96328397:+,family_with_sequence_similarity_120A,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	FOXP1--SMC6	2	0	FOXP1	19737	chr3:71247353:-	SMC6	54736	chr2:17927218:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,SMC6->chr2:17845079-17981509:-,structural_maintenance_of_chromosomes_6	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	GNPTG--FBXL16	2	0	GNPTG	1384	chr16:1402307:+	FBXL16	11675	chr16:747419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+,FBXL16->F-box_and_leucine-rich_repeat_protein_16,chr16:742500-755829:-	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	INTS4--MIPEP	2	0	INTS4	6189	chr11:77690042:-	MIPEP	35031	chr13:24460645:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,MIPEP->chr13:24304328-24463558:-,mitochondrial_intermediate_peptidase	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	MOSPD1--IL13RA1	2	0	MOSPD1	1086	chrX:134049212:-	IL13RA1	22287	chrX:117907842:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	MOSPD1->chrX:134021656-134049297:-,motile_sperm_domain_containing_1,IL13RA1->chrX:117861535-117928502:+,interleukin_13_receptor_subunit_alpha_1	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	MPG--ZNF737	2	0	MPG	3694	chr16:129699:+	ZNF737	15164	chr19:20728782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	MPG->N-methylpurine_DNA_glycosylase,chr16:127006-135852:+,ZNF737->chr19:20718631-20748615:-,zinc_finger_protein_737	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	NKTR--EIF5	2	0	NKTR	15451	chr3:42674315:+	EIF5	34477	chr14:103803014:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	NKTR->chr3:42642106-42690227:+,natural_killer_cell_triggering_receptor,EIF5->chr14:103799881-103811362:+,eukaryotic_translation_initiation_factor_5	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	PITPNB--C5orf42	2	0	PITPNB	8332	chr22:28290543:-	C5orf42	62974	chr5:37148370:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta,C5orf42->chr5:37106330-37249530:-,chromosome_5_open_reading_frame_42	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	POLE--FBRSL1	2	0	POLE	1112	chr12:133263840:-	FBRSL1	44444	chr12:133084739:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_INVERSION:-:+:[38574],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	TMCO3--ING1	2	0	TMCO3	12355	chr13:114193822:+	ING1	24851	chr13:111371576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	TRIM24--ZNF431	2	0	TRIM24	15425	chr7:138255748:+	ZNF431	44825	chr19:21372668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	TRIM24->Oncogene{Bushman},chr7:138145079-138274738:+,tripartite_motif_containing_24,ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	TSPAN5--TRMT10A	2	0	TSPAN5	1484	chr4:99579297:-	TRMT10A	21817	chr4:100480518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,TRMT10A->chr4:100467866-100485189:-,tRNA_methyltransferase_10A	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
U178_CENTRAL_NERVOUS_SYSTEM	ZNF71--BASP1	274	137	ZNF71	2250	chr19:57112959:+	BASP1	18677	chr5:17275317:+	ONLY_REF_SPLICE	YES	65	416	0.86	0.5	3.4655	1.7328	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	U178_CENTRAL_NERVOUS_SYSTEM	0.5	0.86	5.1983	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MYO10--RP11-321E2.3	47	37	MYO10	1476	chr5:16935897:-	RP11-321E2.3	55325	chr5:17441578:+	ONLY_REF_SPLICE	YES	43	1	0.66	0.99	0.5945	0.468	MYO10->chr5:16665395-16936372:-,myosin_X,RP11-321E2.3->chr5:17404128-17441803:+	U178_CENTRAL_NERVOUS_SYSTEM	0.66	0.99	1.0625	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	ZNF71--BASP1	4	75	ZNF71	1165	chr19:57106796:+	BASP1	18677	chr5:17275317:+	ONLY_REF_SPLICE	YES	58	416	0.58	0.16	0.0506	0.9486	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	U178_CENTRAL_NERVOUS_SYSTEM	0.16	0.58	0.9992	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	CTD-2583A14.10--CDH18	14	31	CTD-2583A14.10	1227	chr19:58331313:+	CDH18	14469	chr5:19981287:-	ONLY_REF_SPLICE	YES	20	8	0.69	0.85	0.1771	0.3921	CTD-2583A14.10->chr19:58331087-58370309:+,CDH18->cadherin_18,chr5:19473060-20575982:-	U178_CENTRAL_NERVOUS_SYSTEM	0.69	0.85	0.5692	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MYO10--RP11-321E2.3	3	38	MYO10	2949	chr5:16916164:-	RP11-321E2.3	55325	chr5:17441578:+	ONLY_REF_SPLICE	YES	44	1	0.48	0.98	0.0379	0.4806	MYO10->chr5:16665395-16936372:-,myosin_X,RP11-321E2.3->chr5:17404128-17441803:+	U178_CENTRAL_NERVOUS_SYSTEM	0.48	0.98	0.5185	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	CTD-2583A14.10--CDH18	3	31	CTD-2583A14.10	1831	chr19:58331917:+	CDH18	14469	chr5:19981287:-	ONLY_REF_SPLICE	YES	21	8	0.62	0.81	0.0379	0.3921	CTD-2583A14.10->chr19:58331087-58370309:+,CDH18->cadherin_18,chr5:19473060-20575982:-	U178_CENTRAL_NERVOUS_SYSTEM	0.62	0.81	0.43	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	CTD-2583A14.10--CDH18	5	11	CTD-2583A14.10	1227	chr19:58331313:+	CDH18	19005	chr5:19839351:-	ONLY_REF_SPLICE	YES	20	13	0.44	0.55	0.0632	0.1391	CTD-2583A14.10->chr19:58331087-58370309:+,CDH18->cadherin_18,chr5:19473060-20575982:-	U178_CENTRAL_NERVOUS_SYSTEM	0.44	0.55	0.2023	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	CTD-2583A14.10--CDH18	1	11	CTD-2583A14.10	1831	chr19:58331917:+	CDH18	19005	chr5:19839351:-	ONLY_REF_SPLICE	YES	21	13	0.36	0.48	0.0126	0.1391	CTD-2583A14.10->chr19:58331087-58370309:+,CDH18->cadherin_18,chr5:19473060-20575982:-	U178_CENTRAL_NERVOUS_SYSTEM	0.36	0.48	0.1517	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	CCDC171--SH3GL2	3	1	CCDC171	41513	chr9:15920420:+	SH3GL2	63322	chr9:17786379:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0379	0.0126	CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171,SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+	U178_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	ITGA3--TUBB	3	0	ITGA3	12301	chr17:48153818:+	TUBB	28691	chr6:30691270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3,TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	0	0	0	5	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	PRKCSH--LGALS1	3	0	PRKCSH	11051	chr19:11560150:+	LGALS1	15725	chr22:38071655:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	PRKCSH->chr19:11546109-11561783:+,protein_kinase_C_substrate_80K-H,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	0	0	0	3	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	SQSTM1--SERPINE1	3	0	SQSTM1	14489	chr5:179260129:+	SERPINE1	20885	chr7:100770469:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	SQSTM1->chr5:179233388-179265078:+,sequestosome_1,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	ZNF71--BASP1	3	0	ZNF71	1063	chr19:57106694:+	BASP1	18677	chr5:17275317:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	CDKN3--CDK15	2	0	CDKN3	4599	chr14:54875507:+	CDK15	25611	chr2:202719597:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3,CDK15->chr2:202655184-202760273:+,cyclin-dependent_kinase_15	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	COL6A1--LINC00888	2	0	COL6A1	14419	chr21:47419606:+	LINC00888	26259	chr3:183171800:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,LINC00888->chr3:183165396-183173801:+,long_intergenic_non-protein_coding_RNA_888	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	DIS3L2--GAS5	2	0	DIS3L2	14009	chr2:233028342:+	GAS5	43399	chr1:173833644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	DIS3L2->DIS3_like_3'-5'_exoribonuclease_2,chr2:232825955-233209060:+,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	GTF2A2--SCFD1	2	0	GTF2A2	1136	chr15:59949605:-	SCFD1	39246	chr14:31185130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTF2A2->chr15:59930261-59949740:-,general_transcription_factor_IIA_subunit_2,SCFD1->chr14:31091318-31205018:+,sec1_family_domain_containing_1	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	HP1BP3--EIF4G3	2	0	HP1BP3	1129	chr1:21113688:-	EIF4G3	28440	chr1:21415706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	2	0	6	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	KIAA1467--ARHGAP24	2	0	KIAA1467	11392	chr12:13229077:+	ARHGAP24	43163	chr4:86921632:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	KIAA1467->chr12:13197218-13295455:+,ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	SKP2--UBE2I	2	0	SKP2	1282	chr5:36152372:+	UBE2I	23635	chr16:1364294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	SKP2->Oncogene{Bushman},S-phase_kinase-associated_protein_2,_E3_ubiquitin_protein_ligase,chr5:36152091-36184421:+,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	SNX24--SNX2	2	0	SNX24	3255	chr5:122181388:+	SNX2	24349	chr5:122130961:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[13331],SNX24->chr5:122179134-122365049:+,sorting_nexin_24,SNX2->chr5:122110691-122165803:+,sorting_nexin_2	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	1	0	1	1	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	UBFD1--USP37	2	0	UBFD1	9895	chr16:23578390:+	USP37	22415	chr2:219418447:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	UBFD1->chr16:23568392-23585710:+,ubiquitin_family_domain_containing_1,USP37->chr2:219314974-219433084:-,ubiquitin_specific_peptidase_37	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
GSU_STOMACH	USP4--TCAIM	467	202	USP4	1789	chr3:49377357:-	TCAIM	36045	chr3:44396231:+	ONLY_REF_SPLICE	YES	38	93	0.95	0.88	5.5359	2.3946	USP4->Oncogene{Bushman},chr3:49315264-49378145:-,ubiquitin_specific_peptidase_4,TCAIM->T-cell_activation_inhibitor,_mitochondrial,chr3:44379611-44450943:+	GSU_STOMACH	0.88	0.95	7.9305	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	USP4--TCAIM	3	142	USP4	1789	chr3:49377357:-	TCAIM	37118	chr3:44399233:+	ONLY_REF_SPLICE	YES	38	184	0.79	0.44	0.0356	1.6833	USP4->Oncogene{Bushman},chr3:49315264-49378145:-,ubiquitin_specific_peptidase_4,TCAIM->T-cell_activation_inhibitor,_mitochondrial,chr3:44379611-44450943:+	GSU_STOMACH	0.44	0.79	1.7189	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	POLRMT--TPGS1	29	18	POLRMT	1764	chr19:632834:-	TPGS1	20505	chr19:518889:+	ONLY_REF_SPLICE	YES	131	73	0.26	0.39	0.3438	0.2134	LOCAL_INVERSION:-:+:[97569],POLRMT->chr19:617223-633597:-,polymerase_(RNA)_mitochondrial,TPGS1->chr19:507299-519654:+,tubulin_polyglutamylase_complex_subunit_1	GSU_STOMACH	0.26	0.39	0.5572	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	CCDC64--CABP1	26	18	CCDC64	1429	chr12:120428101:+	CABP1	24831	chr12:121093896:+	ONLY_REF_SPLICE	YES	65	7	0.4	0.86	0.3082	0.2134	CCDC64->chr12:120427673-120532298:+,CABP1->calcium_binding_protein_1,chr12:121078355-121105127:+	GSU_STOMACH	0.4	0.86	0.5216	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	CCDC64--CABP1	25	12	CCDC64	1429	chr12:120428101:+	CABP1	26913	chr12:121097681:+	ONLY_REF_SPLICE	YES	65	30	0.36	0.55	0.2964	0.1423	CCDC64->chr12:120427673-120532298:+,CABP1->calcium_binding_protein_1,chr12:121078355-121105127:+	GSU_STOMACH	0.36	0.55	0.4387	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	XPO7--RP11-175E9.1	27	0	XPO7	1120	chr8:21777299:+	RP11-175E9.1	36031	chr8:23646006:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3201	0	XPO7->chr8:21777180-21864096:+,exportin_7,RP11-175E9.1->chr8:23564654-23647000:+	GSU_STOMACH	1	1	0.3201	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	UNC119B--RP11-768F21.1	20	19	UNC119B	3425	chr12:121151190:+	RP11-768F21.1	17233	chr12:119826133:-	ONLY_REF_SPLICE	YES	222	4	0.15	0.91	0.2371	0.2252	UNC119B->chr12:121148238-121161443:+,unc-119_lipid_binding_chaperone_B,RP11-768F21.1->chr12:119825792-120105884:-	GSU_STOMACH	0.15	0.91	0.4623	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	UNC119B--RP11-768F21.1	13	27	UNC119B	3425	chr12:121151190:+	RP11-768F21.1	16117	chr12:119840235:-	ONLY_REF_SPLICE	YES	222	0	0.15	1	0.1541	0.3201	UNC119B->chr12:121148238-121161443:+,unc-119_lipid_binding_chaperone_B,RP11-768F21.1->chr12:119825792-120105884:-	GSU_STOMACH	0.15	1	0.4742	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	OSBPL10--RHOA	13	3	OSBPL10	3705	chr3:32022391:-	RHOA	41696	chr3:49413024:-	ONLY_REF_SPLICE	YES	13	348	0.55	0.04	0.1541	0.0356	OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	GSU_STOMACH	0.04	0.55	0.1897	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	GSR--SCARA3	10	0	GSR	1397	chr8:30585047:-	SCARA3	20984	chr8:27507219:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1185	0	GSR->chr8:30535583-30585443:-,glutathione_reductase,SCARA3->chr8:27491385-27534293:+,scavenger_receptor_class_A_member_3	GSU_STOMACH	1	1	0.1185	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	PLEKHA1--TACC2	6	14	PLEKHA1	6220	chr10:124152857:+	TACC2	53363	chr10:123903087:+	ONLY_REF_SPLICE	YES	129	104	0.13	0.16	0.0711	0.166	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,TACC2->chr10:123748689-124014060:+,transforming_acidic_coiled-coil_containing_protein_2	GSU_STOMACH	0.13	0.16	0.2371	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	FBXW8--KSR2	7	3	FBXW8	13798	chr12:117466059:+	KSR2	33106	chr12:117977692:-	INCL_NON_REF_SPLICE	YES	187	0	0.05	1	0.083	0.0356	FBXW8->F-box_and_WD_repeat_domain_containing_8,chr12:117348761-117468953:+,KSR2->chr12:117890817-118406788:-,kinase_suppressor_of_ras_2	GSU_STOMACH	0.05	1	0.1186	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	UNC119B--RP11-768F21.1	5	9	UNC119B	3425	chr12:121151190:+	RP11-768F21.1	17294	chr12:119826072:-	ONLY_REF_SPLICE	YES	222	4	0.06	0.78	0.0593	0.1067	UNC119B->chr12:121148238-121161443:+,unc-119_lipid_binding_chaperone_B,RP11-768F21.1->chr12:119825792-120105884:-	GSU_STOMACH	0.06	0.78	0.166	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	ARHGAP23--CTD-2377D24.6	6	4	ARHGAP23	16504	chr17:36638919:+	CTD-2377D24.6	32043	chr17:46783421:+	ONLY_REF_SPLICE	YES	0	4	1	0.71	0.0711	0.0474	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,CTD-2377D24.6->chr17:46782360-46784708:+	GSU_STOMACH	0.71	1	0.1185	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	PLEKHA1--TACC2	4	10	PLEKHA1	6220	chr10:124152857:+	TACC2	57415	chr10:123954555:+	ONLY_REF_SPLICE	YES	129	97	0.1	0.13	0.0474	0.1185	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,TACC2->chr10:123748689-124014060:+,transforming_acidic_coiled-coil_containing_protein_2	GSU_STOMACH	0.1	0.13	0.1659	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	FBXW8--KSR2	4	3	FBXW8	13801	chr12:117466062:+	KSR2	33106	chr12:117977692:-	INCL_NON_REF_SPLICE	NO	183	0	0.04	1	0.0474	0.0356	FBXW8->F-box_and_WD_repeat_domain_containing_8,chr12:117348761-117468953:+,KSR2->chr12:117890817-118406788:-,kinase_suppressor_of_ras_2	GSU_STOMACH	0.04	1	0.083	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	ARHGAP23--CTD-2377D24.8	4	1	ARHGAP23	16504	chr17:36638919:+	CTD-2377D24.8	33118	chr17:46781363:+	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0474	0.0119	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,CTD-2377D24.8->chr17:46760729-46781844:+	GSU_STOMACH	0.71	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	ENO1--H1F0	4	0	ENO1	10842	chr1:8924027:-	H1F0	16841	chr22:38201603:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,H1F0->H1_histone_family_member_0,chr22:38201114-38203442:+	GSU_STOMACH	1	1	0.0474	TRUE	0	0	0	4	0	TRUE	ACH-000485
GSU_STOMACH	UNK--KIAA0195	2	3	UNK	1385	chr17:73781065:+	KIAA0195	26738	chr17:73467881:+	ONLY_REF_SPLICE	YES	106	12	0.05	0.29	0.0237	0.0356	UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,KIAA0195->chr17:73437240-73496171:+	GSU_STOMACH	0.05	0.29	0.0593	TRUE	0	2	0	1	2	TRUE	ACH-000485
GSU_STOMACH	GCLM--STT3B	2	0	GCLM	7532	chr1:94360170:-	STT3B	26880	chr3:31663589:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	GSU_STOMACH	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	PLEKHA1--TACC2	2	0	PLEKHA1	1111	chr10:124134322:+	TACC2	57415	chr10:123954555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,TACC2->chr10:123748689-124014060:+,transforming_acidic_coiled-coil_containing_protein_2	GSU_STOMACH	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	ZNF93--PDHA1	2	0	ZNF93	1179	chr19:20011900:+	PDHA1	24904	chrX:19373467:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	ZNF93->chr19:20011722-20046384:+,zinc_finger_protein_93,PDHA1->chrX:19362011-19379823:+,pyruvate_dehydrogenase_(lipoamide)_alpha_1	GSU_STOMACH	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	HOXB3--ZBTB18	1	1	HOXB3	1433	chr17:46681842:-	ZBTB18	21814	chr1:244217090:+	ONLY_REF_SPLICE	YES	33	3	0.06	0.4	0.0119	0.0119	HOXB3->chr17:46626232-46682274:-,homeobox_B3,ZBTB18->chr1:244214585-244220778:+,zinc_finger_and_BTB_domain_containing_18	GSU_STOMACH	0.06	0.4	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000485
CORL95_LUNG	PELI2--RP11-718G2.5	122	27	PELI2	3527	chr14:56645182:+	RP11-718G2.5	15944	chr14:70742013:+	ONLY_REF_SPLICE	YES	41	0	0.78	1	1.1381	0.2519	PELI2->chr14:56584532-56768244:+,pellino_E3_ubiquitin_protein_ligase_family_member_2,RP11-718G2.5->chr14:70742013-70758576:+	CORL95_LUNG	0.78	1	1.39	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	SLC8A3--EVL	98	20	SLC8A3	4538	chr14:70633356:-	EVL	27911	chr14:100551024:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.9142	0.1866	SLC8A3->chr14:70510934-70655787:-,solute_carrier_family_8_member_A3,EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+	CORL95_LUNG	0.99	1	1.1008	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	C1orf174--MEGF6	45	2	C1orf174	1122	chr1:3816736:-	MEGF6	12242	chr1:3519164:-	ONLY_REF_SPLICE	YES	5	0	0.9	1	0.4198	0.0187	C1orf174->chr1:3805689-3816857:-,chromosome_1_open_reading_frame_174,MEGF6->chr1:3406484-3528059:-,multiple_EGF_like_domains_6	CORL95_LUNG	0.9	1	0.4385	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	LINC00669--RP11-636O21.1	18	8	LINC00669	1250	chr18:37380033:-	RP11-636O21.1	16093	chr18:37442213:-	ONLY_REF_SPLICE	YES	60	0	0.3	1	0.1679	0.0746	LOCAL_REARRANGEMENT:-:[40856],LINC00669->chr18:36786888-37380282:-,RP11-636O21.1->chr18:37421138-37504804:-	CORL95_LUNG	0.3	1	0.2425	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	SPIRE2--XXbac-B33L19.3	13	7	SPIRE2	3954	chr16:89895202:+	XXbac-B33L19.3	36660	chr22:20350112:+	INCL_NON_REF_SPLICE	YES	9	1	0.69	0.95	0.1213	0.0653	SPIRE2->chr16:89884587-89937727:+,spire_type_actin_nucleation_factor_2,XXbac-B33L19.3->chr22:20326328-20350457:+	CORL95_LUNG	0.69	0.95	0.1866	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	PELI2--RP11-718G2.5	12	5	PELI2	3527	chr14:56645182:+	RP11-718G2.5	17009	chr14:70758194:+	ONLY_REF_SPLICE	YES	41	0	0.29	1	0.1119	0.0466	PELI2->chr14:56584532-56768244:+,pellino_E3_ubiquitin_protein_ligase_family_member_2,RP11-718G2.5->chr14:70742013-70758576:+	CORL95_LUNG	0.29	1	0.1585	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	SPIRE2--XXbac-B33L19.3	8	10	SPIRE2	3954	chr16:89895202:+	XXbac-B33L19.3	36571	chr22:20350023:+	ONLY_REF_SPLICE	YES	9	0	0.67	1	0.0746	0.0933	SPIRE2->chr16:89884587-89937727:+,spire_type_actin_nucleation_factor_2,XXbac-B33L19.3->chr22:20326328-20350457:+	CORL95_LUNG	0.67	1	0.1679	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	FAF1--AGBL4	6	1	FAF1	3708	chr1:51267303:-	AGBL4	31364	chr1:50317190:-	ONLY_REF_SPLICE	YES	99	10	0.07	0.41	0.056	0.0093	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	CORL95_LUNG	0.07	0.41	0.0653	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	FAF1--AGBL4	6	0	FAF1	1497	chr1:51425439:-	AGBL4	43343	chr1:49100276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.056	0	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	CORL95_LUNG	1	1	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	SNX29--U91319.1	4	1	SNX29	22725	chr16:12371893:+	U91319.1	46012	chr16:13656564:+	ONLY_REF_SPLICE	YES	22	0	0.19	1	0.0373	0.0093	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,U91319.1->chr16:13340173-13656775:+	CORL95_LUNG	0.19	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	ARMC8--CLDN18	4	0	ARMC8	1333	chr3:137906441:+	CLDN18	35357	chr3:137742500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	ARMC8->armadillo_repeat_containing_8,chr3:137906109-138017231:+,CLDN18->chr3:137717577-137752494:+,claudin_18	CORL95_LUNG	1	1	0.0373	TRUE	0	1	0	1	1	TRUE	ACH-000743
CORL95_LUNG	C1orf174--RP11-46F15.2	4	0	C1orf174	1122	chr1:3816736:-	RP11-46F15.2	12071	chr1:3540120:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	C1orf174->chr1:3805689-3816857:-,chromosome_1_open_reading_frame_174,RP11-46F15.2->chr1:3539754-3541307:-	CORL95_LUNG	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	EVL--SLC8A3	4	0	EVL	1609	chr14:100438394:+	SLC8A3	34711	chr14:70635201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+,SLC8A3->chr14:70510934-70655787:-,solute_carrier_family_8_member_A3	CORL95_LUNG	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	ARID1B--SNX9	3	0	ARID1B	7216	chr6:157222659:+	SNX9	41504	chr6:158288579:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	{Klijn_CCL:Kidney=1},ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,SNX9->chr6:158244296-158366109:+,sorting_nexin_9	CORL95_LUNG	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	FYCO1--XCR1	2	0	FYCO1	17756	chr3:45996741:-	XCR1	31796	chr3:46063470:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	LOCAL_REARRANGEMENT:-:[21200],FYCO1->FYVE_and_coiled-coil_domain_containing_1,chr3:45959396-46037316:-,XCR1->X-C_motif_chemokine_receptor_1,chr3:46058516-46069234:-	CORL95_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	GMNN--AK7	2	0	GMNN	3326	chr6:24777525:+	AK7	31540	chr14:96953235:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GMNN->chr6:24775159-24786327:+,geminin,_DNA_replication_inhibitor,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	CORL95_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	MCCC1--POLR2H	2	0	MCCC1	1602	chr3:182833262:-	POLR2H	33494	chr3:184084505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	MCCC1->chr3:182733006-182833863:-,methylcrotonoyl-CoA_carboxylase_1,POLR2H->chr3:184079506-184086384:+,polymerase_(RNA)_II_subunit_H	CORL95_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	RP11-162A12.2--CHMP1A	2	0	RP11-162A12.2	1280	chr18:74533972:-	CHMP1A	12073	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	RP11-162A12.2->chr18:74506688-74534251:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CORL95_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	TMEM179B--ANAPC5	2	0	TMEM179B	1113	chr11:62554999:+	ANAPC5	30044	chr12:121747666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	TMEM179B->chr11:62554887-62557877:+,transmembrane_protein_179B,ANAPC5->anaphase_promoting_complex_subunit_5,chr12:121746048-121837699:-	CORL95_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	NR1H2--TCF4	1	1	NR1H2	1143	chr19:50833052:+	TCF4	23616	chr18:53254367:-	ONLY_REF_SPLICE	NO	1	47	0.67	0.04	0.0093	0.0093	NR1H2->chr19:50832910-50886239:+,nuclear_receptor_subfamily_1_group_H_member_2,TCF4->chr18:52889562-53332018:-,transcription_factor_4	CORL95_LUNG	0.04	0.67	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	RP11-435B5.4--PHF14	1	1	RP11-435B5.4	2843	chr1:143465380:-	PHF14	44113	chr7:11150977:+	ONLY_REF_SPLICE	YES	3	33	0.4	0.06	0.0093	0.0093	RP11-435B5.4->chr1:143354963-143467632:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CORL95_LUNG	0.06	0.4	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000743
UO31_KIDNEY	TFG--PAK3	30	10	TFG	7331	chr3:100451516:+	PAK3	32506	chrX:110416246:+	ONLY_REF_SPLICE	YES	119	0	0.25	1	0.4216	0.1405	TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,PAK3->ArcherDX_panel,FoundationOne_panel,chrX:110187513-110470589:+,p21_(RAC1)_activated_kinase_3	UO31_KIDNEY	0.25	1	0.5621	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	CAPZA2--GLIPR1	23	4	CAPZA2	3371	chr7:116502704:+	GLIPR1	25667	chr12:75874740:+	INCL_NON_REF_SPLICE	YES	28	171	0.49	0.14	0.3232	0.0562	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,GLIPR1->GLI_pathogenesis_related_1,chr12:75874460-75897633:+	UO31_KIDNEY	0.14	0.49	0.3794	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	PAK3--TFG	13	7	PAK3	15759	chrX:110406955:+	TFG	40706	chr3:100455420:+	ONLY_REF_SPLICE	YES	0	122	1	0.14	0.1827	0.0984	PAK3->ArcherDX_panel,FoundationOne_panel,chrX:110187513-110470589:+,p21_(RAC1)_activated_kinase_3,TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+	UO31_KIDNEY	0.14	1	0.2811	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	PAK3--TFG	7	3	PAK3	15078	chrX:110406274:+	TFG	40706	chr3:100455420:+	ONLY_REF_SPLICE	YES	5	122	0.67	0.08	0.0984	0.0422	PAK3->ArcherDX_panel,FoundationOne_panel,chrX:110187513-110470589:+,p21_(RAC1)_activated_kinase_3,TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+	UO31_KIDNEY	0.08	0.67	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	ENO1--PPP3CA	7	0	ENO1	9677	chr1:8925384:-	PPP3CA	25565	chr4:102019607:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0984	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha	UO31_KIDNEY	1	1	0.0984	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	CHST11--AACS	5	5	CHST11	2941	chr12:104851292:+	AACS	43061	chr12:125618549:+	ONLY_REF_SPLICE	YES	5	17	0.67	0.37	0.0703	0.0703	CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,AACS->acetoacetyl-CoA_synthetase,chr12:125549925-125627873:+	UO31_KIDNEY	0.37	0.67	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	MET--RELN	6	0	MET	1188	chr7:116312631:+	RELN	56154	chr7:103244930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0843	0	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,RELN->chr7:103112231-103629963:-,reelin	UO31_KIDNEY	1	1	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	ITGA3--MTATP6P1	3	0	ITGA3	21206	chr17:48166643:+	MTATP6P1	25692	chr1:569359:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	UO31_KIDNEY	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	VIM--RPL8	3	0	VIM	2121	chr10:17271378:+	RPL8	12904	chr8:146017273:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	GTEx&tcga_normals:1/3694=0.03%,VIM->chr10:17270258-17279592:+,vimentin,RPL8->chr8:146015150-146017972:-,ribosomal_protein_L8	UO31_KIDNEY	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	TFG--PAK3	1	6	TFG	7331	chr3:100451516:+	PAK3	33570	chrX:110435355:+	ONLY_REF_SPLICE	YES	119	0	0.06	1	0.0141	0.0843	TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,PAK3->ArcherDX_panel,FoundationOne_panel,chrX:110187513-110470589:+,p21_(RAC1)_activated_kinase_3	UO31_KIDNEY	0.06	1	0.0984	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	CHST11--AACS	1	5	CHST11	2956	chr12:104851307:+	AACS	43061	chr12:125618549:+	ONLY_REF_SPLICE	YES	5	17	0.55	0.26	0.0141	0.0703	CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,AACS->acetoacetyl-CoA_synthetase,chr12:125549925-125627873:+	UO31_KIDNEY	0.26	0.55	0.0844	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	ANKHD1--ANKLE2	2	0	ANKHD1	10965	chr5:139844361:+	ANKLE2	66631	chr12:133306856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	HGNC_GENEFAM,ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	DUSP11--PPIB	2	0	DUSP11	1284	chr2:74007001:-	PPIB	15191	chr15:64454353:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	DUSP11->chr2:73989311-74007284:-,dual_specificity_phosphatase_11,PPIB->chr15:64448011-64455404:-,peptidylprolyl_isomerase_B	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	FEM1C--ACTN1	2	0	FEM1C	2945	chr5:114878647:-	ACTN1	17385	chr14:69392389:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	FEM1C->chr5:114856608-114880591:-,fem-1_homolog_C,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	FLVCR1--STX16	2	0	FLVCR1	1936	chr1:213032532:+	STX16	22503	chr20:57242546:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	FLVCR1->chr1:213031597-213072705:+,feline_leukemia_virus_subgroup_C_cellular_receptor_1,STX16->chr20:57226328-57254582:+,syntaxin_16	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	KANSL3--APP	2	0	KANSL3	5947	chr2:97297049:-	APP	49041	chr21:27328069:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	KIF26B--RP11-36N20.1	2	0	KIF26B	24527	chr1:245862339:+	RP11-36N20.1	36594	chr1:246273084:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,RP11-36N20.1->chr1:246271928-246277168:+	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	MOK--ZKSCAN5	2	0	MOK	2354	chr14:102749815:-	ZKSCAN5	35020	chr7:99117450:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	MOK->MOK_protein_kinase,chr14:102690837-102771537:-,ZKSCAN5->chr7:99102274-99132323:+,zinc_finger_with_KRAB_and_SCAN_domains_5	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	NDUFAF2--XPO7	2	0	NDUFAF2	3555	chr5:60369041:+	XPO7	14136	chr8:21824368:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+,XPO7->chr8:21777180-21864096:+,exportin_7	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	ZFAS1--UBE2D2	2	0	ZFAS1	2031	chr20:47895745:+	UBE2D2	12006	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	ZIC5--MBNL2	2	0	ZIC5	2783	chr13:100622381:-	MBNL2	17832	chr13:98009736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	ZIC5->Zic_family_member_5,chr13:100615218-100624163:-,MBNL2->chr13:97873688-98046374:+,muscleblind_like_splicing_regulator_2	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	ZNF254--CDC37	2	0	ZNF254	3406	chr19:24270139:+	CDC37	24919	chr19:10502382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	ZNF254->chr19:24216276-24312654:+,zinc_finger_protein_254,CDC37->cell_division_cycle_37,chr19:10501810-10530797:-	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	ZNF445--LASP1	2	0	ZNF445	1080	chr3:44519083:-	LASP1	27797	chr17:37070578:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	ZNF445->chr3:44481262-44519162:-,zinc_finger_protein_445,LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	ZNF783--IPO11	2	0	ZNF783	2583	chr7:148963821:+	IPO11	53242	chr5:61856963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	ZNF783->chr7:148959262-148994393:+,zinc_finger_family_member_783,IPO11->chr5:61699799-61924409:+,importin_11	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
CAOV3_OVARY	IGF2R--SYTL3	209	235	IGF2R	8379	chr6:160450687:+	SYTL3	63385	chr6:159134832:+	ONLY_REF_SPLICE	YES	40	1	0.92	1	2.8061	3.1552	{Klijn_CCL:Ovary=1},IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3	CAOV3_OVARY	0.92	1	5.9613	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	IGF2R--SYTL3	187	138	IGF2R	8379	chr6:160450687:+	SYTL3	65589	chr6:159146535:+	ONLY_REF_SPLICE	YES	40	92	0.89	0.78	2.5107	1.8528	{Klijn_CCL:Ovary=1},IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3	CAOV3_OVARY	0.78	0.89	4.3635	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	SCML2--SH3KBP1	196	102	SCML2	6459	chrX:18338452:-	SH3KBP1	48065	chrX:19564168:-	ONLY_REF_SPLICE	YES	8	127	0.97	0.7	2.6315	1.3695	{Klijn_CCL:Ovary=1},SCML2->chrX:18257434-18372847:-,sex_comb_on_midleg-like_2_(Drosophila),SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-	CAOV3_OVARY	0.7	0.97	4.001	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CHD3--DNAH2	115	44	CHD3	9855	chr17:7801420:+	DNAH2	80842	chr17:7724561:+	ONLY_REF_SPLICE	YES	31	3	0.84	0.98	1.544	0.5908	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[51062],CHD3->Oncogene{Bushman},chr17:7788124-7816078:+,chromodomain_helicase_DNA_binding_protein_3,DNAH2->chr17:7620672-7737062:+,dynein_axonemal_heavy_chain_2	CAOV3_OVARY	0.84	0.98	2.1348	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	EPHA2--FBXO42	107	55	EPHA2	3978	chr1:16474873:-	FBXO42	25793	chr1:16583254:-	ONLY_REF_SPLICE	YES	176	19	0.48	0.9	1.4366	0.7384	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:-:[90752],EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-,FBXO42->F-box_protein_42,chr1:16573334-16678949:-	CAOV3_OVARY	0.48	0.9	2.175	TRUE	0	1	0	1	1	TRUE	ACH-000713
CAOV3_OVARY	ZFP36L1--ACTN1	111	7	ZFP36L1	1399	chr14:69262792:-	ACTN1	20378	chr14:69378959:-	ONLY_REF_SPLICE	YES	0	491	1	0.19	1.4903	0.094	LOCAL_REARRANGEMENT:-:[77670],ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	CAOV3_OVARY	0.19	1	1.5843	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	ZFP36L1--ACTN1	88	7	ZFP36L1	1431	chr14:69262760:-	ACTN1	20378	chr14:69378959:-	ONLY_REF_SPLICE	YES	0	491	1	0.16	1.1815	0.094	LOCAL_REARRANGEMENT:-:[77670],ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	CAOV3_OVARY	0.16	1	1.2755	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CNOT6--SLC1A3	65	32	CNOT6	4645	chr5:179977117:+	SLC1A3	28832	chr5:36671131:+	ONLY_REF_SPLICE	YES	53	55	0.65	0.64	0.8727	0.4296	CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+,SLC1A3->chr5:36606457-36688436:+,solute_carrier_family_1_member_3	CAOV3_OVARY	0.64	0.65	1.3023	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	SPARC--GLRA1	50	41	SPARC	11887	chr5:151045922:-	GLRA1	30011	chr5:151202524:-	ONLY_REF_SPLICE	YES	727	0	0.11	1	0.6713	0.5505	SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,GLRA1->chr5:151202074-151304403:-,glycine_receptor_alpha_1	CAOV3_OVARY	0.11	1	1.2218	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	STX5--WDR74	47	35	STX5	1135	chr11:62599426:-	WDR74	13566	chr11:62607131:-	ONLY_REF_SPLICE	YES	23	33	0.78	0.71	0.631	0.4699	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	CAOV3_OVARY	0.71	0.78	1.1009	TRUE	0	4	0	2	4	TRUE	ACH-000713
CAOV3_OVARY	IGF2R--SYTL3	2	185	IGF2R	8379	chr6:160450687:+	SYTL3	64464	chr6:159139119:+	ONLY_REF_SPLICE	YES	40	1	0.82	0.99	0.0269	2.4839	{Klijn_CCL:Ovary=1},IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3	CAOV3_OVARY	0.82	0.99	2.5108	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	IGF2R--SYTL3	11	131	IGF2R	8379	chr6:160450687:+	SYTL3	65592	chr6:159146538:+	INCL_NON_REF_SPLICE	YES	40	91	0.78	0.61	0.1477	1.7588	{Klijn_CCL:Ovary=1},IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3	CAOV3_OVARY	0.61	0.78	1.9065	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	KLHL18--RUNX3	36	24	KLHL18	5800	chr3:47364198:+	RUNX3	28954	chr1:25229157:-	ONLY_REF_SPLICE	YES	10	17	0.86	0.78	0.4833	0.3222	KLHL18->chr3:47324407-47388306:+,kelch_like_family_member_18,RUNX3->Oncogene{Bushman},chr1:25226002-25291612:-,runt_related_transcription_factor_3	CAOV3_OVARY	0.78	0.86	0.8055	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	PACSIN1--SRSF3	31	7	PACSIN1	1132	chr6:34434047:+	SRSF3	18687	chr6:36566626:+	ONLY_REF_SPLICE	YES	7	613	0.84	0.06	0.4162	0.094	PACSIN1->chr6:34433916-34503006:+,protein_kinase_C_and_casein_kinase_substrate_in_neurons_1,SRSF3->Oncogene{Bushman},chr6:36562145-36573377:+,serine/arginine-rich_splicing_factor_3	CAOV3_OVARY	0.06	0.84	0.5102	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RAB11FIP3--DECR2	23	36	RAB11FIP3	4291	chr16:521389:+	DECR2	28066	chr16:460209:+	ONLY_REF_SPLICE	YES	26	55	0.69	0.52	0.3088	0.4833	LOCAL_REARRANGEMENT:+:[13132],RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,DECR2->2,4-dienoyl-CoA_reductase_2,_peroxisomal,chr16:451826-462487:+	CAOV3_OVARY	0.52	0.69	0.7921	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FBXO22--UBE2Q2	27	17	FBXO22	7073	chr15:76209735:+	UBE2Q2	28291	chr15:76189336:+	ONLY_REF_SPLICE	YES	97	130	0.31	0.25	0.3625	0.2282	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[2781],FBXO22->F-box_protein_22,chr15:76196200-76227609:+,UBE2Q2->chr15:76135622-76193419:+,ubiquitin_conjugating_enzyme_E2_Q2	CAOV3_OVARY	0.25	0.31	0.5907	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	HIST2H2BC--HIST2H4B	25	13	HIST2H2BC	1375	chr1:149821965:-	HIST2H4B	6050	chr1:149831245:-	INCL_NON_REF_SPLICE	YES	6	94	0.86	0.29	0.3357	0.1745	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[3268],HIST2H2BC->chr1:149821760-149822339:-,histone_cluster_2,_H2bc_(pseudogene),HIST2H4B->chr1:149825607-149832714:-,histone_cluster_2,_H4b	CAOV3_OVARY	0.29	0.86	0.5102	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	HIST2H2BD--HIST2H4A	25	13	HIST2H2BD	1374	chr1:149814981:+	HIST2H4A	5974	chr1:149805701:+	INCL_NON_REF_SPLICE	YES	0	94	1	0.29	0.3357	0.1745	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[3269],HIST2H2BD->chr1:149814608-149815100:+,histone_cluster_2,_H2bd_(pseudogene),HIST2H4A->chr1:149804221-149811339:+,histone_cluster_2,_H4a	CAOV3_OVARY	0.29	1	0.5102	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CREBBP--ADARB1	25	10	CREBBP	3608	chr16:3900298:-	ADARB1	48776	chr21:46548317:+	ONLY_REF_SPLICE	YES	20	3	0.64	0.92	0.3357	0.1343	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+	CAOV3_OVARY	0.64	0.92	0.47	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	PHLDB1--CD3G	18	20	PHLDB1	38196	chr11:118528168:+	CD3G	42905	chr11:118219742:+	INCL_NON_REF_SPLICE	YES	65	0	0.37	1	0.2417	0.2685	PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,CD3G->CD3g_molecule,chr11:118215059-118225876:+	CAOV3_OVARY	0.37	1	0.5102	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	SPARC--GLRA1	10	41	SPARC	11887	chr5:151045922:-	GLRA1	29987	chr5:151202548:-	ONLY_REF_SPLICE	YES	727	0	0.07	1	0.1343	0.5505	SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,GLRA1->chr5:151202074-151304403:-,glycine_receptor_alpha_1	CAOV3_OVARY	0.07	1	0.6848	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	STX5--WDR74	10	40	STX5	1135	chr11:62599426:-	WDR74	13358	chr11:62607339:-	ONLY_REF_SPLICE	YES	23	14	0.68	0.78	0.1343	0.537	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	CAOV3_OVARY	0.68	0.78	0.6713	TRUE	0	4	0	2	4	TRUE	ACH-000713
CAOV3_OVARY	FTH1--ACTG1	17	0	FTH1	3461	chr11:61732261:-	ACTG1	11898	chr17:79478478:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2282	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	CAOV3_OVARY	1	1	0.2282	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	STX5--WDR74	8	36	STX5	1135	chr11:62599426:-	WDR74	13519	chr11:62607178:-	ONLY_REF_SPLICE	YES	23	26	0.66	0.63	0.1074	0.4833	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	CAOV3_OVARY	0.63	0.66	0.5907	TRUE	0	4	0	2	4	TRUE	ACH-000713
CAOV3_OVARY	EPHA2--FBXO42	3	55	EPHA2	6584	chr1:16464348:-	FBXO42	25793	chr1:16583254:-	ONLY_REF_SPLICE	YES	182	19	0.24	0.75	0.0403	0.7384	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:-:[90752],EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-,FBXO42->F-box_protein_42,chr1:16573334-16678949:-	CAOV3_OVARY	0.24	0.75	0.7787	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	YTHDF2--CMAHP	13	14	YTHDF2	7260	chr1:29070498:+	CMAHP	12324	chr6:25166577:-	INCL_NON_REF_SPLICE	YES	119	0	0.18	1	0.1745	0.188	YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	CAOV3_OVARY	0.18	1	0.3625	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	SPC24--DOCK6	12	13	SPC24	3674	chr19:11258546:-	DOCK6	43222	chr19:11315007:-	ONLY_REF_SPLICE	YES	39	11	0.39	0.69	0.1611	0.1745	LOCAL_REARRANGEMENT:-:[43487],SPC24->SPC24,_NDC80_kinetochore_complex_component,chr19:11242196-11266484:-,DOCK6->chr19:11309971-11373157:-,dedicator_of_cytokinesis_6	CAOV3_OVARY	0.39	0.69	0.3356	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FKTN--SLC44A1	15	0	FKTN	1036	chr9:108320446:+	SLC44A1	28846	chr9:108097844:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	FKTN->chr9:108320411-108403399:+,fukutin,SLC44A1->chr9:108006903-108201452:+,solute_carrier_family_44_member_1	CAOV3_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	STX5--WDR74	5	39	STX5	2070	chr11:62598491:-	WDR74	13566	chr11:62607131:-	ONLY_REF_SPLICE	YES	63	33	0.41	0.57	0.0671	0.5236	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	CAOV3_OVARY	0.41	0.57	0.5907	TRUE	0	4	0	2	4	TRUE	ACH-000713
CAOV3_OVARY	SCML2--SH3KBP1	1	52	SCML2	6459	chrX:18338452:-	SH3KBP1	49194	chrX:19560311:-	ONLY_REF_SPLICE	NO	8	165	0.87	0.24	0.0134	0.6982	{Klijn_CCL:Ovary=1},SCML2->chrX:18257434-18372847:-,sex_comb_on_midleg-like_2_(Drosophila),SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-	CAOV3_OVARY	0.24	0.87	0.7116	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	APPBP2--RP11-15E18.3	13	2	APPBP2	4696	chr17:58571827:-	RP11-15E18.3	27547	chr17:58639519:-	INCL_NON_REF_SPLICE	YES	73	0	0.17	1	0.1745	0.0269	LOCAL_REARRANGEMENT:-:[35791],APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-,RP11-15E18.3->chr17:58639371-58639522:-	CAOV3_OVARY	0.17	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RAB11FIP3--DECR2	6	27	RAB11FIP3	4291	chr16:521389:+	DECR2	28100	chr16:460243:+	ONLY_REF_SPLICE	YES	26	52	0.56	0.39	0.0806	0.3625	LOCAL_REARRANGEMENT:+:[13132],RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,DECR2->2,4-dienoyl-CoA_reductase_2,_peroxisomal,chr16:451826-462487:+	CAOV3_OVARY	0.39	0.56	0.4431	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	STX5--WDR74	1	45	STX5	2070	chr11:62598491:-	WDR74	13358	chr11:62607339:-	ONLY_REF_SPLICE	YES	63	14	0.42	0.77	0.0134	0.6042	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	CAOV3_OVARY	0.42	0.77	0.6176	TRUE	0	4	0	2	4	TRUE	ACH-000713
CAOV3_OVARY	PKN1--CTC-548K16.1	10	5	PKN1	7044	chr19:14557373:+	CTC-548K16.1	21993	chr19:14454238:+	ONLY_REF_SPLICE	YES	259	21	0.05	0.42	0.1343	0.0671	LOCAL_REARRANGEMENT:+:[89140],PKN1->chr19:14543865-14582679:+,protein_kinase_N1,CTC-548K16.1->chr19:14444555-14454725:+	CAOV3_OVARY	0.05	0.42	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CREBBP--ADARB1	8	12	CREBBP	3608	chr16:3900298:-	ADARB1	46554	chr21:46538479:+	ONLY_REF_SPLICE	YES	20	0	0.5	1	0.1074	0.1611	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+	CAOV3_OVARY	0.5	1	0.2685	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	YTHDF2--CMAHP	8	10	YTHDF2	7260	chr1:29070498:+	CMAHP	14154	chr6:25138051:-	ONLY_REF_SPLICE	YES	119	3	0.13	0.86	0.1074	0.1343	YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	CAOV3_OVARY	0.13	0.86	0.2417	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	PPP1R26-AS1--GLT6D1	10	0	PPP1R26-AS1	1105	chr9:138372519:-	GLT6D1	12258	chr9:138523324:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1343	0	PPP1R26-AS1->PPP1R26_antisense_RNA_1,chr9:138354573-138372623:-,GLT6D1->chr9:138515502-138531386:-,glycosyltransferase_6_domain_containing_1	CAOV3_OVARY	1	1	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RPS6KB1--VMP1	7	10	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	46	270	0.27	0.06	0.094	0.1343	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	CAOV3_OVARY	0.06	0.27	0.2283	TRUE	0	8	0	9	5	TRUE	ACH-000713
CAOV3_OVARY	FBXO22--UBE2Q2	5	17	FBXO22	7069	chr15:76209731:+	UBE2Q2	28291	chr15:76189336:+	INCL_NON_REF_SPLICE	YES	96	130	0.19	0.14	0.0671	0.2282	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[2781],FBXO22->F-box_protein_22,chr15:76196200-76227609:+,UBE2Q2->chr15:76135622-76193419:+,ubiquitin_conjugating_enzyme_E2_Q2	CAOV3_OVARY	0.14	0.19	0.2953	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	MTIF2--CCDC88A	9	1	MTIF2	14941	chr2:55467147:-	CCDC88A	51883	chr2:55536390:-	ONLY_REF_SPLICE	YES	60	26	0.14	0.28	0.1208	0.0134	LOCAL_REARRANGEMENT:-:[18495],MTIF2->chr2:55463731-55496483:-,mitochondrial_translational_initiation_factor_2,CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A	CAOV3_OVARY	0.14	0.28	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	PHLDB1--CD3G	8	5	PHLDB1	37623	chr11:118527595:+	CD3G	42905	chr11:118219742:+	INCL_NON_REF_SPLICE	YES	41	0	0.24	1	0.1074	0.0671	PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,CD3G->CD3g_molecule,chr11:118215059-118225876:+	CAOV3_OVARY	0.24	1	0.1745	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	NUBP2--EME2	6	9	NUBP2	4755	chr16:1836656:+	EME2	17070	chr16:1829986:+	INCL_NON_REF_SPLICE	YES	158	48	0.09	0.24	0.0806	0.1208	LOCAL_REARRANGEMENT:+:[1193],NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,EME2->chr16:1823208-1831709:+,essential_meiotic_structure-specific_endonuclease_subunit_2	CAOV3_OVARY	0.09	0.24	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	PPP1R26-AS1--GLT6D1	8	0	PPP1R26-AS1	1105	chr9:138372519:-	GLT6D1	13306	chr9:138518052:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1074	0	PPP1R26-AS1->PPP1R26_antisense_RNA_1,chr9:138354573-138372623:-,GLT6D1->chr9:138515502-138531386:-,glycosyltransferase_6_domain_containing_1	CAOV3_OVARY	1	1	0.1074	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	DDX6--BCL9L	7	2	DDX6	17612	chr11:118626111:-	BCL9L	26595	chr11:118789588:-	INCL_NON_REF_SPLICE	YES	55	28	0.14	0.24	0.094	0.0269	DDX6->DEAD-box_helicase_6,Oncogene{Bushman},chr11:118620034-118661858:-,BCL9L->B-cell_CLL/lymphoma_9-like,chr11:118764584-118796317:-	CAOV3_OVARY	0.14	0.24	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	PHLDB1--CD3G	2	20	PHLDB1	38766	chr11:118528738:+	CD3G	42905	chr11:118219742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0.2685	PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,CD3G->CD3g_molecule,chr11:118215059-118225876:+	CAOV3_OVARY	1	1	0.2954	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RP11-32B5.7--RORA	6	4	RP11-32B5.7	1254	chr15:21967898:-	RORA	13265	chr15:60970885:-	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0806	0.0537	RP11-32B5.7->chr15:21941147-21968151:-,RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-	CAOV3_OVARY	0.77	1	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RPS6KB1--VMP1	7	0	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.094	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	CAOV3_OVARY	1	1	0.094	TRUE	0	9	0	11	6	TRUE	ACH-000713
CAOV3_OVARY	PLEKHA6--PIK3C2B	6	1	PLEKHA6	3218	chr1:204336927:-	PIK3C2B	56341	chr1:204409449:-	ONLY_REF_SPLICE	YES	3	12	0.7	0.37	0.0806	0.0134	LOCAL_REARRANGEMENT:-:[44963],PLEKHA6->chr1:204187979-204346793:-,pleckstrin_homology_domain_containing_A6,PIK3C2B->ArcherDX_panel,FoundationOne_panel,chr1:204391756-204463852:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_beta	CAOV3_OVARY	0.37	0.7	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CREBBP--ADARB1	3	12	CREBBP	3608	chr16:3900298:-	ADARB1	45448	chr21:46536848:+	ONLY_REF_SPLICE	YES	20	0	0.43	1	0.0403	0.1611	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+	CAOV3_OVARY	0.43	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CMSS1--GPR128	5	2	CMSS1	1210	chr3:99536887:+	GPR128	39083	chr3:100387793:+	ONLY_REF_SPLICE	YES	126	0	0.05	1	0.0671	0.0269	CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast),GPR128->chr3:100328433-100414323:+	CAOV3_OVARY	0.05	1	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FBXL18--ACTB	5	2	FBXL18	1142	chr7:5553288:-	ACTB	21335	chr7:5569294:-	ONLY_REF_SPLICE	YES	21	83	0.25	0.08	0.0671	0.0269	LOCAL_REARRANGEMENT:-:[13353],FBXL18->F-box_and_leucine-rich_repeat_protein_18,chr7:5470966-5553429:-,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	CAOV3_OVARY	0.08	0.25	0.094	TRUE	0	1	0	1	1	TRUE	ACH-000713
CAOV3_OVARY	CHD3--DNAH2	1	16	CHD3	9047	chr17:7800612:+	DNAH2	80842	chr17:7724561:+	ONLY_REF_SPLICE	NO	81	3	0.17	0.85	0.0134	0.2148	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[51062],CHD3->Oncogene{Bushman},chr17:7788124-7816078:+,chromodomain_helicase_DNA_binding_protein_3,DNAH2->chr17:7620672-7737062:+,dynein_axonemal_heavy_chain_2	CAOV3_OVARY	0.17	0.85	0.2282	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CREBBP--ADARB1	2	12	CREBBP	3608	chr16:3900298:-	ADARB1	47610	chr21:46540709:+	ONLY_REF_SPLICE	YES	20	1	0.41	0.93	0.0269	0.1611	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+	CAOV3_OVARY	0.41	0.93	0.188	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FKTN--SLC44A1	5	0	FKTN	1036	chr9:108320446:+	SLC44A1	29983	chr9:108110639:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	FKTN->chr9:108320411-108403399:+,fukutin,SLC44A1->chr9:108006903-108201452:+,solute_carrier_family_44_member_1	CAOV3_OVARY	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	SPC24--DOCK6	3	8	SPC24	3531	chr19:11258689:-	DOCK6	43222	chr19:11315007:-	ONLY_REF_SPLICE	YES	47	11	0.19	0.5	0.0403	0.1074	LOCAL_REARRANGEMENT:-:[43487],SPC24->SPC24,_NDC80_kinetochore_complex_component,chr19:11242196-11266484:-,DOCK6->chr19:11309971-11373157:-,dedicator_of_cytokinesis_6	CAOV3_OVARY	0.19	0.5	0.1477	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	UST--SASH1	5	0	UST	1350	chr6:149068813:+	SASH1	27778	chr6:148835460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	CAOV3_OVARY	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	EMC1--CAPZB	4	0	EMC1	1138	chr1:19577909:-	CAPZB	37343	chr1:19684057:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0537	0	LOCAL_REARRANGEMENT:-:[87221],EMC1->ER_membrane_protein_complex_subunit_1,chr1:19542158-19578046:-,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	CAOV3_OVARY	1	1	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	PTP4A1--MT2A	4	0	PTP4A1	3933	chr6:64282517:+	MT2A	16021	chr16:56642496:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1,MT2A->chr16:56642111-56643409:+,metallothionein_2A	CAOV3_OVARY	1	1	0.0537	TRUE	0	0	0	2	0	TRUE	ACH-000713
CAOV3_OVARY	GPR128--CMSS1	3	3	GPR128	16645	chr3:100387949:+	CMSS1	31865	chr3:99865817:+	ONLY_REF_SPLICE	YES	0	140	1	0.04	0.0403	0.0403	GPR128->chr3:100328433-100414323:+,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	CAOV3_OVARY	0.04	1	0.0806	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RPS6KB1--VMP1	1	10	RPS6KB1	13255	chr17:58012661:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	56	202	0.16	0.05	0.0134	0.1343	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	CAOV3_OVARY	0.05	0.16	0.1477	TRUE	0	1	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FTH1--GSTP1	3	0	FTH1	1229	chr11:61734904:-	GSTP1	8716	chr11:67351606:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	CAOV3_OVARY	1	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FTH1--GSTP1	3	0	FTH1	1174	chr11:61734959:-	GSTP1	8403	chr11:67351293:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	CAOV3_OVARY	1	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	WBP1L--SFXN2	2	3	WBP1L	1174	chr10:104503900:+	SFXN2	17695	chr10:104486369:+	ONLY_REF_SPLICE	YES	56	5	0.08	0.5	0.0269	0.0403	LOCAL_REARRANGEMENT:+:[478],WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+,SFXN2->chr10:104474295-104503249:+,sideroflexin_2	CAOV3_OVARY	0.08	0.5	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RPS6KB1--VMP1	1	6	RPS6KB1	5427	chr17:57990165:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	59	270	0.11	0.03	0.0134	0.0806	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	CAOV3_OVARY	0.03	0.11	0.094	TRUE	0	5	0	6	5	TRUE	ACH-000713
CAOV3_OVARY	TRIM55--DNAJC5B	2	2	TRIM55	2581	chr8:67040711:+	DNAJC5B	16544	chr8:66955723:+	ONLY_REF_SPLICE	NO	4	0	0.5	1	0.0269	0.0269	LOCAL_REARRANGEMENT:+:[26380],TRIM55->chr8:67039131-67087720:+,tripartite_motif_containing_55,DNAJC5B->DnaJ_heat_shock_protein_family_(Hsp40)_member_C5_beta,chr8:66933795-67012751:+	CAOV3_OVARY	0.5	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RPS6KB1--VMP1	1	5	RPS6KB1	7326	chr17:57992064:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	46	292	0.12	0.02	0.0134	0.0671	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	CAOV3_OVARY	0.02	0.12	0.0805	TRUE	0	4	1	7	3	TRUE	ACH-000713
CAOV3_OVARY	AGRN--GNAS	2	0	AGRN	4732	chr1:970704:+	GNAS	39945	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	AGRN->agrin,chr1:955503-991496:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	BMPER--DPY19L2P1	2	0	BMPER	5273	chr7:33977000:+	DPY19L2P1	52291	chr7:35131558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	BMPER->BMP_binding_endothelial_regulator,chr7:33944523-34195484:+,DPY19L2P1->DPY19L2_pseudogene_1,chr7:35119601-35225934:-	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CAMTA1--LAMA3	2	0	CAMTA1	4547	chr1:6885270:+	LAMA3	113002	chr18:21523752:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CREBBP--ADARB1	2	0	CREBBP	1895	chr16:3929833:-	ADARB1	48776	chr21:46548317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	DIDO1--ARPP19	2	0	DIDO1	1157	chr20:61569148:-	ARPP19	33226	chr15:52849419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,ARPP19->cAMP_regulated_phosphoprotein_19kDa,chr15:52839242-52862080:-	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	DMXL1--HSD17B4	2	0	DMXL1	17360	chr5:118465118:+	HSD17B4	74871	chr5:118832238:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	DMXL1->Dmx_like_1,chr5:118373467-118584833:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	EP300--SP1	2	0	EP300	2313	chr22:41489102:+	SP1	44349	chr12:53800369:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	GXYLT1--PPHLN1	2	0	GXYLT1	1454	chr12:42538228:-	PPHLN1	31205	chr12:42768665:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Cells_-_Transformed_fibroblasts=1},{Klijn_CCL:Breast=2},LOCAL_INVERSION:-:+:[93568],GXYLT1->chr12:42475647-42538681:-,glucoside_xylosyltransferase_1,PPHLN1->chr12:42632249-42853517:+,periphilin_1	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	LYPD6B--ORC4	2	0	LYPD6B	7317	chr2:149987467:+	ORC4	41822	chr2:148693267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LYPD6B->LY6/PLAUR_domain_containing_6B,chr2:149894621-150071776:+,ORC4->chr2:148687968-148779147:-,origin_recognition_complex_subunit_4	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RBM25--CEP128	1	4	RBM25	5737	chr14:73543076:+	CEP128	63115	chr14:80971363:-	ONLY_REF_SPLICE	YES	88	10	0.05	0.33	0.0134	0.0537	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	CAOV3_OVARY	0.05	0.33	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RP11-363E6.3--SCYL2	2	0	RP11-363E6.3	1114	chr8:82193568:-	SCYL2	7230	chr12:100676721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	RP11-363E6.3->chr8:82192106-82193681:-,SCYL2->SCY1_like_pseudokinase_2,chr12:100660918-100735502:+	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	TFCP2L1--RALB	2	0	TFCP2L1	2312	chr2:122038696:-	RALB	28634	chr2:121036191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	TFCP2L1->chr2:121974163-122042783:-,transcription_factor_CP2-like_1,RALB->Oncogene{Bushman},chr2:120997640-121052289:+,v-ral_simian_leukemia_viral_oncogene_homolog_B	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	PHLDB1--CD3G	1	1	PHLDB1	31280	chr11:118521252:+	CD3G	42905	chr11:118219742:+	ONLY_REF_SPLICE	NO	55	0	0.04	1	0.0134	0.0134	PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,CD3G->CD3g_molecule,chr11:118215059-118225876:+	CAOV3_OVARY	0.04	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000713
HT29_LARGE_INTESTINE	USP6NL--UPF2	98	94	USP6NL	2399	chr10:11639630:-	UPF2	49252	chr10:11998522:-	ONLY_REF_SPLICE	YES	37	52	0.84	0.79	1.7653	1.6933	USP6NL->USP6_N-terminal_like,chr10:11495945-11653753:-,UPF2->UPF2_regulator_of_nonsense_transcripts_homolog_(yeast),chr10:11962021-12085169:-	HT29_LARGE_INTESTINE	0.79	0.84	3.4586	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	MTMR3--APOH	86	112	MTMR3	1205	chr22:30279348:+	APOH	32631	chr17:64252645:-	INCL_NON_REF_SPLICE	YES	12	0	0.94	1	1.5492	2.0175	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,APOH->apolipoprotein_H,chr17:64208151-64252643:-	HT29_LARGE_INTESTINE	0.94	1	3.5667	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	MTMR3--APOH	87	79	MTMR3	1205	chr22:30279348:+	APOH	33753	chr17:64225540:-	ONLY_REF_SPLICE	YES	12	9	0.93	0.95	1.5672	1.4231	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,APOH->apolipoprotein_H,chr17:64208151-64252643:-	HT29_LARGE_INTESTINE	0.93	0.95	2.9903	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	MTMR3--APOH	15	79	MTMR3	1205	chr22:30279348:+	APOH	33756	chr17:64225537:-	INCL_NON_REF_SPLICE	YES	12	9	0.89	0.91	0.2702	1.4231	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,APOH->apolipoprotein_H,chr17:64208151-64252643:-	HT29_LARGE_INTESTINE	0.89	0.91	1.6933	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	USP6NL--UPF2	5	62	USP6NL	1312	chr10:11653442:-	UPF2	49252	chr10:11998522:-	ONLY_REF_SPLICE	YES	40	52	0.63	0.56	0.0901	1.1168	USP6NL->USP6_N-terminal_like,chr10:11495945-11653753:-,UPF2->UPF2_regulator_of_nonsense_transcripts_homolog_(yeast),chr10:11962021-12085169:-	HT29_LARGE_INTESTINE	0.56	0.63	1.2069	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	USP6NL--UPF2	10	8	USP6NL	2399	chr10:11639630:-	UPF2	52728	chr10:11990507:-	ONLY_REF_SPLICE	YES	37	165	0.33	0.1	0.1801	0.1441	USP6NL->USP6_N-terminal_like,chr10:11495945-11653753:-,UPF2->UPF2_regulator_of_nonsense_transcripts_homolog_(yeast),chr10:11962021-12085169:-	HT29_LARGE_INTESTINE	0.1	0.33	0.3242	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	MTMR3--APOH	1	34	MTMR3	1205	chr22:30279348:+	APOH	34979	chr17:64224314:-	ONLY_REF_SPLICE	YES	12	23	0.74	0.6	0.018	0.6125	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,APOH->apolipoprotein_H,chr17:64208151-64252643:-	HT29_LARGE_INTESTINE	0.6	0.74	0.6305	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	POLR3K--RHBDF1	3	0	POLR3K	2738	chr16:101558:-	RHBDF1	10112	chr16:115037:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	LOCAL_REARRANGEMENT:-:[4430],POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,RHBDF1->chr16:108058-126354:-,rhomboid_5_homolog_1_(Drosophila)	HT29_LARGE_INTESTINE	1	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	FAM120B--PARK2	2	3	FAM120B	9801	chr6:170657411:+	PARK2	22301	chr6:162864505:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.036	0.054	FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B,PARK2->ArcherDX_panel,FoundationOne_panel,chr6:161768452-163148803:-,parkin_RBR_E3_ubiquitin_protein_ligase	HT29_LARGE_INTESTINE	0.45	1	0.09	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	FAM120B--PARK2	2	2	FAM120B	8628	chr6:170639638:+	PARK2	22301	chr6:162864505:-	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.036	0.036	FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B,PARK2->ArcherDX_panel,FoundationOne_panel,chr6:161768452-163148803:-,parkin_RBR_E3_ubiquitin_protein_ligase	HT29_LARGE_INTESTINE	0.2	1	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	CAPZA2--SRP9	2	0	CAPZA2	3371	chr7:116502704:+	SRP9	25493	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	HT29_LARGE_INTESTINE	1	1	0.036	TRUE	0	0	0	9	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	SAT1--RNPC3	2	0	SAT1	1711	chrX:23802000:+	RNPC3	23740	chr1:104097656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	SAT1->chrX:23801290-23804343:+,spermidine/spermine_N1-acetyltransferase_1,RNPC3->RNA_binding_region_(RNP1,_RRM)_containing_3,chr1:104068313-104097861:+	HT29_LARGE_INTESTINE	1	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	MCF2L--STARD13	1	1	MCF2L	10405	chr13:113623028:+	STARD13	73268	chr13:33716510:-	ONLY_REF_SPLICE	YES	13	0	0.13	1	0.018	0.018	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HT29_LARGE_INTESTINE	0.13	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	MCF2L--STARD13	1	1	MCF2L	11149	chr13:113623772:+	STARD13	73268	chr13:33716510:-	ONLY_REF_SPLICE	YES	33	0	0.06	1	0.018	0.018	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HT29_LARGE_INTESTINE	0.06	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000552
SNU1040_LARGE_INTESTINE	CDC6--GRB7	14	4	CDC6	4518	chr17:38447920:+	GRB7	17982	chr17:37898505:+	ONLY_REF_SPLICE	YES	117	39	0.13	0.32	0.1269	0.0362	CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	SNU1040_LARGE_INTESTINE	0.13	0.32	0.1631	TRUE	0	0	0	1	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	SNHG16--RNF157-AS1	12	0	SNHG16	1092	chr17:74553939:+	RNF157-AS1	16813	chr17:74143375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1087	0	HGNC_GENEFAM,SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,RNF157-AS1->RNF157_antisense_RNA_1,chr17:74136637-74150731:+	SNU1040_LARGE_INTESTINE	1	1	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	ANP32B--NCL	4	0	ANP32B	8161	chr9:100773632:+	NCL	19692	chr2:232325404:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU1040_LARGE_INTESTINE	1	1	0.0362	TRUE	0	0	0	7	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	ANP32B--NCL	4	0	ANP32B	8161	chr9:100773632:+	NCL	18803	chr2:232326293:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU1040_LARGE_INTESTINE	1	1	0.0362	TRUE	0	0	0	7	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	ANP32B--NCL	3	0	ANP32B	8161	chr9:100773632:+	NCL	18698	chr2:232326398:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU1040_LARGE_INTESTINE	1	1	0.0272	TRUE	0	0	0	7	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	CBX5--GNAS	3	0	CBX5	1095	chr12:54673792:-	GNAS	37563	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},CBX5->chr12:54624724-54673886:-,chromobox_5,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU1040_LARGE_INTESTINE	1	1	0.0272	TRUE	0	1	0	3	1	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	HOXB3--CTBP2	3	0	HOXB3	1433	chr17:46681842:-	CTBP2	31024	chr10:126727724:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	HOXB3->chr17:46626232-46682274:-,homeobox_B3,CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-	SNU1040_LARGE_INTESTINE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	KDM4C--TPD52L3	2	1	KDM4C	6150	chr9:6814745:+	TPD52L3	45773	chr9:6330182:+	ONLY_REF_SPLICE	YES	17	0	0.15	1	0.0181	0.0091	KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,TPD52L3->chr9:6328349-6331900:+,tumor_protein_D52-like_3	SNU1040_LARGE_INTESTINE	0.15	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	SNHG16--RNF157-AS1	2	0	SNHG16	1092	chr17:74553939:+	RNF157-AS1	13322	chr17:74139311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	HGNC_GENEFAM,SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,RNF157-AS1->RNF157_antisense_RNA_1,chr17:74136637-74150731:+	SNU1040_LARGE_INTESTINE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	SNHG16--RNF157-AS1	2	0	SNHG16	1092	chr17:74553939:+	RNF157-AS1	18119	chr17:74149206:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	HGNC_GENEFAM,SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,RNF157-AS1->RNF157_antisense_RNA_1,chr17:74136637-74150731:+	SNU1040_LARGE_INTESTINE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	USP12--CDX2	2	0	USP12	1305	chr13:27745729:-	CDX2	20356	chr13:28539152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,CDX2->Oncogene{Bushman},caudal_type_homeobox_2,chr13:28536274-28545276:-	SNU1040_LARGE_INTESTINE	1	1	0.0181	TRUE	1	0	1	1	0	TRUE	ACH-000999
MFE296_ENDOMETRIUM	BCAR3--DNTTIP2	21	5	BCAR3	2227	chr1:94311123:-	DNTTIP2	33362	chr1:94341339:-	ONLY_REF_SPLICE	YES	1	60	0.96	0.3	0.2021	0.0481	LOCAL_REARRANGEMENT:-:[20667],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,DNTTIP2->chr1:94333373-94345474:-,deoxynucleotidyltransferase_terminal_interacting_protein_2	MFE296_ENDOMETRIUM	0.3	0.96	0.2502	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	ZNF608--RP11-284A20.2	6	6	ZNF608	13402	chr5:123979204:-	RP11-284A20.2	20861	chr5:124205603:-	INCL_NON_REF_SPLICE	YES	136	0	0.08	1	0.0578	0.0578	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,RP11-284A20.2->chr5:124204665-124205607:-	MFE296_ENDOMETRIUM	0.08	1	0.1156	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	WWOX--VAT1L	4	1	WWOX	6262	chr16:78149051:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	30	0	0.14	1	0.0385	0.0096	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	MFE296_ENDOMETRIUM	0.14	1	0.0481	TRUE	0	1	0	1	1	TRUE	ACH-000879
MFE296_ENDOMETRIUM	AP003900.6--RP11-435B5.4	4	0	AP003900.6	1122	chr21:11169841:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	MFE296_ENDOMETRIUM	1	1	0.0385	TRUE	1	3	0	6	3	TRUE	ACH-000879
MFE296_ENDOMETRIUM	MYL6--GNAS	4	0	MYL6	2462	chr12:56553406:+	GNAS	25173	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MFE296_ENDOMETRIUM	1	1	0.0385	TRUE	0	1	0	3	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	AP003900.6--RP11-435B5.4	3	0	AP003900.6	3299	chr21:11174002:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	MFE296_ENDOMETRIUM	1	1	0.0289	TRUE	0	1	0	4	1	TRUE	ACH-000879
MFE296_ENDOMETRIUM	HMGA2--MSRB3	3	0	HMGA2	5315	chr12:66232349:+	MSRB3	29738	chr12:65702309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	MFE296_ENDOMETRIUM	1	1	0.0289	TRUE	0	0	0	2	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	RP11-673C5.1--RP11-112H10.6	3	0	RP11-673C5.1	1629	chr15:71457126:-	RP11-112H10.6	5396	chr17:56553562:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	RP11-673C5.1->chr15:71457109-71457754:-,RP11-112H10.6->chr17:56553499-56554311:-	MFE296_ENDOMETRIUM	1	1	0.0289	TRUE	0	0	0	2	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	DARS2--NDC1	2	0	DARS2	12601	chr1:173810111:+	NDC1	42094	chr1:54233706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	DARS2->aspartyl-tRNA_synthetase_2,_mitochondrial,chr1:173793641-173827684:+,NDC1->NDC1_transmembrane_nucleoporin,chr1:54231133-54304533:-	MFE296_ENDOMETRIUM	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	DDHD1--C9orf3	2	0	DDHD1	4498	chr14:53570401:-	C9orf3	64343	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	DDHD1->DDHD_domain_containing_1,chr14:53510686-53620000:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	MFE296_ENDOMETRIUM	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	PRPF40A--CANX	2	0	PRPF40A	5065	chr2:153551056:-	CANX	41806	chr5:179136874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PRPF40A->chr2:153508107-153574511:-,pre-mRNA_processing_factor_40_homolog_A,CANX->calnexin,chr5:179105629-179157926:+	MFE296_ENDOMETRIUM	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	RSRC1--PDSS1	2	0	RSRC1	11834	chr3:158015864:+	PDSS1	29938	chr10:27009147:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,PDSS1->chr10:26986588-27035727:+,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_1	MFE296_ENDOMETRIUM	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	SLC13A3--RHOC	2	0	SLC13A3	3341	chr20:45298682:-	RHOC	33268	chr1:113244317:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SLC13A3->chr20:45186463-45304714:-,solute_carrier_family_13_member_3,RHOC->Oncogene{Bushman},chr1:113243728-113250056:-,ras_homolog_family_member_C	MFE296_ENDOMETRIUM	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	TNS3--PKD1L1	1	2	TNS3	1132	chr7:47622025:-	PKD1L1	75245	chr7:47906212:-	ONLY_REF_SPLICE	YES	54	0	0.05	1	0.0096	0.0193	{Klijn_CCL:Lung=2},TNS3->chr7:47314752-47622156:-,tensin_3,PKD1L1->chr7:47814250-47988088:-,polycystin_1_like_1,_transient_receptor_potential_channel_interacting	MFE296_ENDOMETRIUM	0.05	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	WWOX--VAT1L	1	1	WWOX	6262	chr16:78149051:+	VAT1L	43513	chr16:78011494:+	ONLY_REF_SPLICE	NO	30	0	0.06	1	0.0096	0.0096	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	MFE296_ENDOMETRIUM	0.06	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000879
LN443_CENTRAL_NERVOUS_SYSTEM	MCUR1--SRSF10	69	0	MCUR1	11892	chr6:13790712:-	SRSF10	27160	chr1:24296868:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8701	0	MCUR1->chr6:13786789-13814800:-,mitochondrial_calcium_uniporter_regulator_1,SRSF10->chr1:24291294-24307417:-,serine/arginine-rich_splicing_factor_10	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.8701	TRUE	1	0	0	3	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	LONP2--RP11-363E7.3	9	7	LONP2	12890	chr16:48337216:+	RP11-363E7.3	29808	chr9:19464053:-	ONLY_REF_SPLICE	YES	61	4	0.21	0.8	0.1135	0.0883	LONP2->chr16:48278207-48397033:+,lon_peptidase_2,_peroxisomal,RP11-363E7.3->chr9:19460924-19464522:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.21	0.8	0.2018	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	LONP2--RP11-363E7.3	8	10	LONP2	12890	chr16:48337216:+	RP11-363E7.3	29370	chr9:19464491:-	INCL_NON_REF_SPLICE	YES	61	0	0.23	1	0.1009	0.1261	LONP2->chr16:48278207-48397033:+,lon_peptidase_2,_peroxisomal,RP11-363E7.3->chr9:19460924-19464522:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.227	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TMEM19--SRGAP1	7	13	TMEM19	1724	chr12:72080590:+	SRGAP1	17834	chr12:64377727:+	ONLY_REF_SPLICE	YES	109	26	0.16	0.43	0.0883	0.1639	TMEM19->chr12:72079867-72097836:+,transmembrane_protein_19,SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+	LN443_CENTRAL_NERVOUS_SYSTEM	0.16	0.43	0.2522	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TRIM26--MPP5	8	5	TRIM26	6404	chr6:30164293:-	MPP5	30301	chr14:67786947:+	ONLY_REF_SPLICE	YES	50	178	0.21	0.07	0.1009	0.0631	TRIM26->chr6:30152232-30181204:-,tripartite_motif_containing_26,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	LN443_CENTRAL_NERVOUS_SYSTEM	0.07	0.21	0.164	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	LY6E--S100A6	3	0	LY6E	4687	chr8:144103227:+	S100A6	9963	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0378	TRUE	0	0	0	7	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TBC1D14--KIAA0232	2	2	TBC1D14	4099	chr4:6925838:+	KIAA0232	33610	chr4:6858891:+	ONLY_REF_SPLICE	YES	14	13	0.22	0.24	0.0252	0.0252	LOCAL_REARRANGEMENT:+:[25072],TBC1D14->TBC1_domain_family_member_14,chr4:6910969-7034845:+,KIAA0232->KIAA0232,chr4:6783102-6885897:+	LN443_CENTRAL_NERVOUS_SYSTEM	0.22	0.24	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	SORBS1--ENTPD1-AS1	2	1	SORBS1	3202	chr10:97250792:-	ENTPD1-AS1	66609	chr10:97636417:-	ONLY_REF_SPLICE	YES	5	33	0.38	0.08	0.0252	0.0126	SORBS1->chr10:97071528-97321171:-,sorbin_and_SH3_domain_containing_1,ENTPD1-AS1->ENTPD1_antisense_RNA_1,chr10:97512963-97849995:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.08	0.38	0.0378	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	AC074363.1--XIRP2	2	0	AC074363.1	2265	chr2:168346787:+	XIRP2	14758	chr2:168096365:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LOCAL_REARRANGEMENT:+:[33418],AC074363.1->chr2:168149681-168414843:+,XIRP2->chr2:167744997-168116263:+,xin_actin_binding_repeat_containing_2	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	ARHGAP5--CTD-2162K18.5	2	0	ARHGAP5	8068	chr14:32563592:+	CTD-2162K18.5	28184	chr19:37318552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,CTD-2162K18.5->chr19:37288420-37319017:+	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	EPS15--FAF1	2	0	EPS15	1130	chr1:51984871:-	FAF1	40284	chr1:51323669:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	1	0	1	1	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	FNTA--BIN3	2	0	FNTA	2593	chr8:42911689:+	BIN3	22423	chr8:22502316:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	FNTA->chr8:42889337-42940931:+,farnesyltransferase,_CAAX_box,_alpha,BIN3->bridging_integrator_3,chr8:22477931-22526661:-	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	IFI44L--PTPN11	2	0	IFI44L	1650	chr1:79086256:+	PTPN11	36257	chr12:112939948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	IFI44L->chr1:79085607-79111830:+,interferon_induced_protein_44_like,PTPN11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:112856155-112947717:+,protein_tyrosine_phosphatase,_non-receptor_type_11	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	LONP2--RP11-363E7.3	1	4	LONP2	12890	chr16:48337216:+	RP11-363E7.3	31124	chr9:19461355:-	ONLY_REF_SPLICE	YES	61	2	0.08	0.71	0.0126	0.0504	LONP2->chr16:48278207-48397033:+,lon_peptidase_2,_peroxisomal,RP11-363E7.3->chr9:19460924-19464522:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.08	0.71	0.063	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	NPW--MYSM1	2	0	NPW	1177	chr16:2060103:+	MYSM1	19923	chr1:59134710:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	NPW->chr16:2059927-2070756:+,neuropeptide_W,MYSM1->Myb_like,_SWIRM_and_MPN_domains_1,chr1:59120411-59165764:-	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RPL15--COL6A2	2	0	RPL15	1695	chr3:23958730:+	COL6A2	13236	chr21:47531364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TMEM19--SRGAP1	2	0	TMEM19	1234	chr12:72080100:+	SRGAP1	17834	chr12:64377727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	TMEM19->chr12:72079867-72097836:+,transmembrane_protein_19,SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TMEM244--ARHGAP18	2	0	TMEM244	2478	chr6:130166912:-	ARHGAP18	10024	chr6:129963163:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	GTEx_FI:{Brain=[count:4=pct:0.6]},TMEM244->chr6:130152389-130182692:-,transmembrane_protein_244,ARHGAP18->Rho_GTPase_activating_protein_18,chr6:129897277-130031370:-	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	1	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TRIM26--MPP5	2	0	TRIM26	1123	chr6:30181082:-	MPP5	30301	chr14:67786947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	TRIM26->chr6:30152232-30181204:-,tripartite_motif_containing_26,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	ZNF675--ARNTL2	2	0	ZNF675	4087	chr19:23844916:-	ARNTL2	30290	chr12:27553467:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	ZNF675->chr19:23708433-23870022:-,zinc_finger_protein_675,ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RP11-163F15.1--RP11-215N21.1	1	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0126	0.0126	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.0252	TRUE	0	5	0	7	5	TRUE	ACH-000673
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	484	149	IGH@	94353	chr14:106330425:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	YES	5	29	0.99	0.96	5.4932	1.6911	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.99	7.1843	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	399	149	IGH@	94754	chr14:106330024:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	YES	4	29	0.99	0.95	4.5284	1.6911	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	0.99	6.2195	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	168	148	IGH@	93161	chr14:106331617:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	NO	5	29	0.98	0.92	1.9067	1.6797	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.98	3.5864	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	81	149	IGH@	95370	chr14:106329408:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	YES	4	29	0.98	0.89	0.9193	1.6911	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.98	2.6104	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-1158E12.3--DHRSX	99	44	RP5-1158E12.3	3112	chrX:45708809:-	DHRSX	14614	chrX:2209644:-	ONLY_REF_SPLICE	YES	5	31	0.97	0.82	1.1236	0.4994	RP5-1158E12.3->chrX:45707328-45710920:-,DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.97	1.623	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	24	163	IGH@	94353	chr14:106330425:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	YES	5	0	0.97	1	0.2724	1.85	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	2.1224	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	21	163	IGH@	94754	chr14:106330024:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	YES	4	0	0.98	1	0.2383	1.85	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	2.0883	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	21	157	IGH@	94353	chr14:106330425:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	YES	5	4	0.97	0.98	0.2383	1.7819	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.98	2.0202	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	13	157	IGH@	94754	chr14:106330024:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	YES	4	4	0.98	0.98	0.1475	1.7819	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	0.98	1.9294	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	8	162	IGH@	93161	chr14:106331617:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	NO	5	0	0.97	1	0.0908	1.8386	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.9294	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	6	156	IGH@	93161	chr14:106331617:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	YES	5	4	0.97	0.98	0.0681	1.7705	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.98	1.8386	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	3	157	IGH@	95370	chr14:106329408:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	YES	4	4	0.98	0.98	0.034	1.7819	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	0.98	1.8159	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	163	IGH@	95370	chr14:106329408:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	NO	4	0	0.98	1	0.0113	1.85	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	1.8613	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	153	IGH@	94754	chr14:106330024:-	WHSC1	136858	chr4:1900948:+	ONLY_REF_SPLICE	YES	4	33	0.97	0.82	0.0113	1.7365	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.97	1.7478	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	153	IGH@	94353	chr14:106330425:-	WHSC1	136858	chr4:1900948:+	ONLY_REF_SPLICE	NO	5	33	0.97	0.82	0.0113	1.7365	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.97	1.7478	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLX1B--NEK1	9	4	SLX1B	4431	chr16:29469336:+	NEK1	17221	chr4:170502053:-	ONLY_REF_SPLICE	YES	37	33	0.26	0.28	0.1021	0.0454	SLX1B->SLX1_homolog_B,_structure-specific_endonuclease_subunit,chr16:29465822-29469540:+,NEK1->NIMA_related_kinase_1,chr4:170314426-170533780:-	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.28	0.1475	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-1158E12.3--DHRSX	1	32	RP5-1158E12.3	1137	chrX:45710784:-	DHRSX	14614	chrX:2209644:-	ONLY_REF_SPLICE	YES	17	31	0.66	0.52	0.0113	0.3632	RP5-1158E12.3->chrX:45707328-45710920:-,DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.66	0.3745	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMBIM4--NELL2	2	11	TMBIM4	1218	chr12:66563635:-	NELL2	20478	chr12:45275622:-	ONLY_REF_SPLICE	YES	224	0	0.05	1	0.0227	0.1248	TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4,NELL2->chr12:44902058-45315631:-,neural_EGFL_like_2	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.1475	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHERP--SLC35E1	4	0	CHERP	1661	chr19:16652681:-	SLC35E1	28326	chr19:16666208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0	LOCAL_REARRANGEMENT:-:[7301],CHERP->calcium_homeostasis_endoplasmic_reticulum_protein,chr19:16628700-16653341:-,SLC35E1->chr19:16660642-16683193:-,solute_carrier_family_35_member_E1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTDP1--NFATC1	4	0	CTDP1	18072	chr18:77496521:+	NFATC1	41198	chr18:77287528:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0	GTEx_FI:{Blood=[count:1=pct:0.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},CTDP1->CTD_phosphatase_subunit_1,chr18:77439801-77514510:+,NFATC1->Oncogene{Bushman},chr18:77155856-77289325:+,nuclear_factor_of_activated_T-cells_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF6--UQCC1	3	0	EIF6	1260	chr20:33872529:-	UQCC1	25064	chr20:33894582:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	LOCAL_REARRANGEMENT:-:[17581],EIF6->chr20:33866714-33872788:-,eukaryotic_translation_initiation_factor_6,UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--ATP5G2	3	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	7	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--NPM1	3	0	TXNDC5	2343	chr6:7910752:-	NPM1	18924	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	5	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS1A--C6orf106	2	0	ANKS1A	1335	chr6:34857376:+	C6orf106	32617	chr6:34622556:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,C6orf106->chr6:34555065-34664636:-,chromosome_6_open_reading_frame_106	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--PGBD2	2	0	CPSF6	11046	chr12:69656342:+	PGBD2	23586	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	7	0	6	2	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2215E18.1--CAST	2	0	CTD-2215E18.1	1130	chr5:96424908:+	CAST	42265	chr5:96097978:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CTD-2215E18.1->chr5:96424779-96519354:+,CAST->calpastatin,chr5:95860971-96115299:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--HSPA9	2	0	DANCR	1530	chr4:53579126:+	HSPA9	16239	chr5:137895780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DEF6--SRP9	2	0	DEF6	1135	chr6:35265729:+	SRP9	13896	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	DEF6->DEF6,_guanine_nucleotide_exchange_factor,chr6:35265595-35289548:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC7--RAB5C	2	0	DNAJC7	3237	chr17:40169358:-	RAB5C	37626	chr17:40278866:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	DNAJC7->DnaJ_heat_shock_protein_family_(Hsp40)_member_C7,chr17:40128451-40173394:-,RAB5C->Oncogene{Bushman},RAB5C,_member_RAS_oncogene_family,chr17:40276994-40307035:-	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTG1--HEATR2	2	0	MTG1	7895	chr10:135216277:+	HEATR2	21769	chr7:801390:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	MTG1->chr10:135207598-135234811:+,mitochondrial_ribosome_associated_GTPase_1,HEATR2->chr7:766338-829190:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NVL--LIN9	2	0	NVL	2391	chr1:224514093:-	LIN9	41723	chr1:226455791:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NVL->chr1:224415036-224518089:-,nuclear_VCP-like,LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAIP2B--CHST15	2	0	PAIP2B	1156	chr2:71454058:-	CHST15	15634	chr10:125806240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PAIP2B->chr2:71409869-71454213:-,poly(A)_binding_protein_interacting_protein_2B,CHST15->carbohydrate_(N-acetylgalactosamine_4-sulfate_6-O)_sulfotransferase_15,chr10:125767184-125853206:-	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPCDC--PSPC1P1	2	0	PPCDC	9525	chr15:75352087:+	PSPC1P1	18348	chr13:19775962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PPCDC->chr15:75315896-75409803:+,phosphopantothenoylcysteine_decarboxylase,PSPC1P1->chr13:19775777-19801572:-,paraspeckle_component_1_pseudogene_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-387D10.2--MCTP2	2	0	RP11-387D10.2	3420	chr15:91256398:-	MCTP2	16536	chr15:94882519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RP11-387D10.2->chr15:91163239-91260372:-,MCTP2->chr15:94774767-95023632:+,multiple_C2_domains,_transmembrane_2	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN3--PTGES3	2	0	RTN3	1333	chr11:63449250:+	PTGES3	20865	chr12:57066849:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RTN3->chr11:63448918-63527363:+,reticulon_3,PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SKA3--SEPT7P2	2	0	SKA3	1228	chr13:21750514:-	SEPT7P2	24489	chr7:45776509:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SKA3->chr13:21727734-21750741:-,spindle_and_kinetochore_associated_complex_subunit_3,SEPT7P2->chr7:45763379-45808617:-,septin_7_pseudogene_2	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM106A--SSU72	2	0	TMEM106A	5687	chr17:41369331:+	SSU72	12810	chr1:1500296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TMEM106A->chr17:41363854-41372061:+,transmembrane_protein_106A,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP6NL--SEPHS1	2	0	USP6NL	1312	chr10:11653442:-	SEPHS1	38816	chr10:13380808:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	USP6NL->USP6_N-terminal_like,chr10:11495945-11653753:-,SEPHS1->chr10:13359424-13390297:-,selenophosphate_synthetase_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF215--PPP2CB	2	0	ZNF215	2404	chr11:6949038:+	PPP2CB	18563	chr8:30657271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZNF215->chr11:6947635-7005863:+,zinc_finger_protein_215,PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
COV362_OVARY	DEDD--UFC1	137	36	DEDD	2874	chr1:161100605:-	UFC1	12773	chr1:161126740:+	ONLY_REF_SPLICE	YES	57	612	0.75	0.22	1.3556	0.3562	LOCAL_INVERSION:-:+:[20088],DEDD->chr1:161090764-161102478:-,death_effector_domain_containing,UFC1->chr1:161122566-161128646:+,ubiquitin-fold_modifier_conjugating_enzyme_1	COV362_OVARY	0.22	0.75	1.7118	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	HKR1--SPIDR	85	22	HKR1	14380	chr19:37838774:+	SPIDR	59742	chr8:48647869:+	ONLY_REF_SPLICE	YES	24	48	0.82	0.69	0.8411	0.2177	HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+,SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair	COV362_OVARY	0.69	0.82	1.0588	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	PBX1--RP11-284F21.7	58	21	PBX1	4894	chr1:164532548:+	RP11-284F21.7	51987	chr1:156616946:-	ONLY_REF_SPLICE	YES	55	4	0.59	0.95	0.5739	0.2078	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,RP11-284F21.7->chr1:156616299-156631216:-	COV362_OVARY	0.59	0.95	0.7817	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	EPN1--AP001596.6	53	28	EPN1	4441	chr19:56190221:+	AP001596.6	26794	chr21:27843070:+	ONLY_REF_SPLICE	YES	616	1	0.12	0.99	0.5244	0.2771	EPN1->chr19:56186592-56221224:+,epsin_1,AP001596.6->chr21:27750871-27844017:+	COV362_OVARY	0.12	0.99	0.8015	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	EPN1--AP001597.1	47	9	EPN1	4441	chr19:56190221:+	AP001597.1	19927	chr21:27875901:+	ONLY_REF_SPLICE	YES	616	0	0.08	1	0.4651	0.0891	EPN1->chr19:56186592-56221224:+,epsin_1,AP001597.1->chr21:27765954-27941571:+	COV362_OVARY	0.08	1	0.5542	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	STAG1--RP11-731C17.1	16	5	STAG1	1184	chr3:136471037:-	RP11-731C17.1	45584	chr3:136527876:-	INCL_NON_REF_SPLICE	YES	77	0	0.21	1	0.1583	0.0495	LOCAL_REARRANGEMENT:-:[56173],STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,RP11-731C17.1->chr3:136527393-136528465:-	COV362_OVARY	0.21	1	0.2078	TRUE	0	1	0	2	1	TRUE	ACH-000278
COV362_OVARY	FTH1P8--S100A6	16	0	FTH1P8	1489	chrX:147134241:+	S100A6	5491	chr1:153507744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1583	0	FTH1P8->chrX:147133753-147134266:+,ferritin,_heavy_polypeptide_1_pseudogene_8,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	COV362_OVARY	1	1	0.1583	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	RSF1--TENM4	12	5	RSF1	16058	chr11:77404552:-	TENM4	82076	chr11:78387432:-	ONLY_REF_SPLICE	YES	74	37	0.19	0.31	0.1187	0.0495	RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	COV362_OVARY	0.19	0.31	0.1682	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	ARHGAP42--LYPD6	9	3	ARHGAP42	1180	chr11:100558563:+	LYPD6	42014	chr2:150294152:+	ONLY_REF_SPLICE	YES	7	34	0.63	0.26	0.0891	0.0297	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,LYPD6->LY6/PLAUR_domain_containing_6,chr2:150186499-150330662:+	COV362_OVARY	0.26	0.63	0.1188	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	EPN1--AP001596.6	1	28	EPN1	4441	chr19:56190221:+	AP001596.6	25458	chr21:27790262:+	ONLY_REF_SPLICE	YES	616	0	0.04	1	0.0099	0.2771	EPN1->chr19:56186592-56221224:+,epsin_1,AP001596.6->chr21:27750871-27844017:+	COV362_OVARY	0.04	1	0.287	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	KANSL1--LRRC37A2	5	1	KANSL1	8599	chr17:44230270:-	LRRC37A2	40568	chr17:44617542:+	ONLY_REF_SPLICE	YES	33	17	0.15	0.26	0.0495	0.0099	GTEx_FI:{Brain=[count:2=pct:0.3]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	COV362_OVARY	0.15	0.26	0.0594	TRUE	0	0	0	2	0	TRUE	ACH-000278
COV362_OVARY	LINC00839--KIAA1279	5	1	LINC00839	2604	chr10:42972890:+	KIAA1279	12965	chr10:70764802:+	ONLY_REF_SPLICE	YES	10	41	0.38	0.13	0.0495	0.0099	LINC00839->chr10:42970991-42990784:+,long_intergenic_non-protein_coding_RNA_839,KIAA1279->chr10:70748487-70776738:+	COV362_OVARY	0.13	0.38	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	SLC3A2--POLR2G	5	0	SLC3A2	7935	chr11:62650471:+	POLR2G	16767	chr11:62529267:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[89336],SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,POLR2G->chr11:62529016-62534182:+,polymerase_(RNA)_II_subunit_G	COV362_OVARY	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	RP1-178F15.4--RPLP1	4	2	RP1-178F15.4	1301	chr1:153606573:-	RPLP1	7020	chr15:69745182:+	INCL_NON_REF_SPLICE	YES	53	0	0.1	1	0.0396	0.0198	RP1-178F15.4->chr1:153603914-153606873:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	COV362_OVARY	0.1	1	0.0594	TRUE	0	1	0	1	1	TRUE	ACH-000278
COV362_OVARY	CFL1--RPL3	3	0	CFL1	6221	chr11:65623436:-	RPL3	18713	chr22:39713627:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx&tcga_normals:2/3694=0.05%,CFL1->chr11:65590493-65629497:-,cofilin_1,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	COV362_OVARY	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	FTH1--CRIP1	3	0	FTH1	1229	chr11:61734904:-	CRIP1	9092	chr14:105953570:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,CRIP1->chr14:105952654-105955284:+,chr14:105953536-105958604:+,cysteine_rich_protein_1	COV362_OVARY	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	ZNF736--ENO1	3	0	ZNF736	8361	chr7:63797360:+	ENO1	28032	chr1:8925541:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	COV362_OVARY	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	KANSL1--LRRC37A2	2	1	KANSL1	8599	chr17:44230270:-	LRRC37A2	36623	chr17:44594728:+	ONLY_REF_SPLICE	YES	33	12	0.08	0.2	0.0198	0.0099	GTEx_FI:{Brain=[count:2=pct:0.3]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	COV362_OVARY	0.08	0.2	0.0297	TRUE	0	1	0	3	1	TRUE	ACH-000278
COV362_OVARY	CAPZA1--SRP9	2	0	CAPZA1	1711	chr1:113162505:+	SRP9	16068	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CAPZA1->capping_actin_protein_of_muscle_Z-line_alpha_subunit_1,chr1:113161795-113214241:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	COV362_OVARY	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	EPG5--ATP5A1	2	0	EPG5	48223	chr18:43435538:-	ATP5A1	61216	chr18:43675097:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	EPG5->Oncogene{Bushman},chr18:43427574-43547240:-,ectopic_P-granules_autophagy_protein_5_homolog_(C._elegans),ATP5A1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_alpha_subunit_1,_cardiac_muscle,chr18:43664110-43684300:-	COV362_OVARY	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	FAM32A--MAT2B	2	0	FAM32A	4448	chr19:16301384:+	MAT2B	11435	chr5:162939008:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	FAM32A->chr19:16296191-16302857:+,family_with_sequence_similarity_32_member_A,MAT2B->chr5:162930120-162946342:+,methionine_adenosyltransferase_2B	COV362_OVARY	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	RPS3--CSDE1	2	0	RPS3	2292	chr11:75111821:+	CSDE1	20997	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	COV362_OVARY	1	1	0.0198	TRUE	0	0	0	2	0	TRUE	ACH-000278
SCC15_UPPER_AERODIGESTIVE_TRACT	ANP32B--WNK2	31	16	ANP32B	1249	chr9:100745891:+	WNK2	46746	chr9:96079802:+	ONLY_REF_SPLICE	YES	413	3	0.1	0.94	0.2914	0.1504	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.1	0.94	0.4418	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TMEM242--KDM1B	21	7	TMEM242	3035	chr6:157739814:-	KDM1B	25655	chr6:18205768:+	ONLY_REF_SPLICE	YES	96	12	0.23	0.7	0.1974	0.0658	{Klijn_CCL:Head-Neck=1},TMEM242->chr6:157710418-157744633:-,transmembrane_protein_242,KDM1B->chr6:18155560-18224084:+,lysine_demethylase_1B	SCC15_UPPER_AERODIGESTIVE_TRACT	0.23	0.7	0.2632	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TMEM242--KDM1B	10	5	TMEM242	3035	chr6:157739814:-	KDM1B	26783	chr6:18207629:+	ONLY_REF_SPLICE	YES	96	8	0.14	0.65	0.094	0.047	{Klijn_CCL:Head-Neck=1},TMEM242->chr6:157710418-157744633:-,transmembrane_protein_242,KDM1B->chr6:18155560-18224084:+,lysine_demethylase_1B	SCC15_UPPER_AERODIGESTIVE_TRACT	0.14	0.65	0.141	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	PPAP2A--ST18	9	1	PPAP2A	1479	chr5:54830400:-	ST18	14113	chr8:53322012:-	ONLY_REF_SPLICE	YES	172	0	0.05	1	0.0846	0.0094	PPAP2A->chr5:54720682-54830878:-,ST18->chr8:53023399-53373519:-,suppression_of_tumorigenicity_18,_zinc_finger	SCC15_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	IPPK--C9orf3	4	3	IPPK	6781	chr9:95410341:-	C9orf3	25257	chr9:97535284:+	ONLY_REF_SPLICE	YES	41	6	0.15	0.54	0.0376	0.0282	IPPK->chr9:95375466-95432547:-,inositol-pentakisphosphate_2-kinase,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SCC15_UPPER_AERODIGESTIVE_TRACT	0.15	0.54	0.0658	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	IPPK--C9orf3	3	3	IPPK	6781	chr9:95410341:-	C9orf3	23903	chr9:97525340:+	INCL_NON_REF_SPLICE	YES	41	7	0.13	0.46	0.0282	0.0282	IPPK->chr9:95375466-95432547:-,inositol-pentakisphosphate_2-kinase,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SCC15_UPPER_AERODIGESTIVE_TRACT	0.13	0.46	0.0564	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	ACTA2--LIPA	2	0	ACTA2	1369	chr10:90750779:-	LIPA	27757	chr10:91007406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ACTA2->actin,_alpha_2,_smooth_muscle,_aorta,chr10:90694831-90751147:-,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	KDELC2--MDM2	2	0	KDELC2	8966	chr11:108348751:-	MDM2	22729	chr12:69214105:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	KDELC2->KDEL_motif_containing_2,chr11:108342832-108369159:-,MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0188	TRUE	0	0	0	2	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	POLE2--PSMA3	2	0	POLE2	3464	chr14:50146443:-	PSMA3	23714	chr14:58718837:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	ZBTB20--WDR52	2	0	ZBTB20	6598	chr3:114693213:-	WDR52	73217	chr3:113049515:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,WDR52->chr3:113005777-113160457:-	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	LINC00662--ZNF407	1	1	LINC00662	1941	chr19:28283908:-	ZNF407	40553	chr18:72632470:+	ONLY_REF_SPLICE	NO	32	10	0.06	0.17	0.0094	0.0094	LINC00662->chr19:28175488-28284848:-,long_intergenic_non-protein_coding_RNA_662,ZNF407->chr18:72265106-72777627:+,zinc_finger_protein_407	SCC15_UPPER_AERODIGESTIVE_TRACT	0.06	0.17	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP13-143G15.4--EYA4	1	1	RP13-143G15.4	3725	chr6:136483390:-	EYA4	26270	chr6:133777694:+	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0094	0.0094	RP13-143G15.4->chr6:136415853-136546733:-,EYA4->EYA_transcriptional_coactivator_and_phosphatase_4,Oncogene{Bushman},chr6:133561736-133853258:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP13-143G15.4--EYA4	1	1	RP13-143G15.4	3725	chr6:136483390:-	EYA4	27363	chr6:133782252:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0094	0.0094	RP13-143G15.4->chr6:136415853-136546733:-,EYA4->EYA_transcriptional_coactivator_and_phosphatase_4,Oncogene{Bushman},chr6:133561736-133853258:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	ZNF462--RP11-363D24.1	1	1	ZNF462	14221	chr9:109701388:+	RP11-363D24.1	32404	chr9:110182701:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0094	0.0094	ZNF462->chr9:109625378-109775915:+,zinc_finger_protein_462,RP11-363D24.1->chr9:110182565-110193083:-	SCC15_UPPER_AERODIGESTIVE_TRACT	0.2	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
HCC1954_BREAST	PHF20L1--SAMD12	144	100	PHF20L1	9359	chr8:133816985:+	SAMD12	48698	chr8:119209971:-	ONLY_REF_SPLICE	YES	52	64	0.82	0.79	1.8203	1.2641	{Klijn_CCL:Breast=1},PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	HCC1954_BREAST	0.79	0.82	3.0844	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	STRADB--NOP58	112	77	STRADB	8068	chr2:202337799:+	NOP58	29452	chr2:203162102:+	ONLY_REF_SPLICE	YES	18	174	0.91	0.52	1.4158	0.9734	Mitelman{CA_ad=1},{Klijn_CCL:Breast=1},STRADB->STE20-related_kinase_adaptor_beta,chr2:202252581-202345569:+,NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	HCC1954_BREAST	0.52	0.91	2.3892	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	GALNT7--ORC4	103	92	GALNT7	10139	chr4:174225269:+	ORC4	27552	chr2:148716435:-	ONLY_REF_SPLICE	YES	137	160	0.59	0.55	1.302	1.163	{Klijn_CCL:Breast=1},GALNT7->chr4:174089904-174245118:+,polypeptide_N-acetylgalactosaminyltransferase_7,ORC4->chr2:148687968-148779147:-,origin_recognition_complex_subunit_4	HCC1954_BREAST	0.55	0.59	2.465	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	GSDMC--PVT1	50	22	GSDMC	6558	chr8:130774872:-	PVT1	40472	chr8:129113226:+	ONLY_REF_SPLICE	YES	89	29	0.45	0.71	0.6321	0.2781	GSDMC->chr8:130760442-130799134:-,gasdermin_C,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HCC1954_BREAST	0.45	0.71	0.9102	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	OXR1--PCAT2	37	45	OXR1	9883	chr8:107670413:+	PCAT2	34555	chr8:128091378:-	ONLY_REF_SPLICE	YES	186	0	0.31	1	0.4677	0.5689	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,PCAT2->chr8:128084939-128094466:-,prostate_cancer_associated_transcript_2_(non-protein_coding)	HCC1954_BREAST	0.31	1	1.0366	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	INPP5A--PWWP2B	32	3	INPP5A	2394	chr10:134421460:+	PWWP2B	25739	chr10:134230565:+	ONLY_REF_SPLICE	YES	1	45	0.97	0.44	0.4045	0.0379	GTEx_FI:{Skin=[count:6=pct:1.9],Brain=[count:1=pct:0.2],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=6;pct=0.07%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Pancreas=1,Colon_-_Sigmoid=1},INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A,PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+	HCC1954_BREAST	0.44	0.97	0.4424	TRUE	1	1	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	CCDC57--LINC00511	23	20	CCDC57	3818	chr17:80159548:-	LINC00511	53050	chr17:70427365:-	INCL_NON_REF_SPLICE	YES	7	65	0.86	0.4	0.2907	0.2528	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HCC1954_BREAST	0.4	0.86	0.5435	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	URB1--BAGE2	23	6	URB1	8875	chr21:33744816:-	BAGE2	54922	chr21:11058323:-	ONLY_REF_SPLICE	YES	56	0	0.34	1	0.2907	0.0758	URB1->URB1_ribosome_biogenesis_1_homolog_(S._cerevisiae),chr21:33683329-33765335:-,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	HCC1954_BREAST	0.34	1	0.3665	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	PDCD6--RP11-138J23.1	16	12	PDCD6	2152	chr5:272887:+	RP11-138J23.1	23986	chr5:103439875:+	ONLY_REF_SPLICE	YES	512	4	0.05	0.88	0.2023	0.1517	PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,RP11-138J23.1->chr5:103415612-103441104:+	HCC1954_BREAST	0.05	0.88	0.354	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	RBM6--FAM212A	18	2	RBM6	1219	chr3:49977658:+	FAM212A	34768	chr3:49841614:+	ONLY_REF_SPLICE	YES	4	14	0.83	0.59	0.2275	0.0253	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,FAM212A->chr3:49840687-49842463:+,family_with_sequence_similarity_212_member_A	HCC1954_BREAST	0.59	0.83	0.2528	TRUE	0	1	0	1	1	TRUE	ACH-000859
HCC1954_BREAST	ITSN1--AF127577.8	13	12	ITSN1	8199	chr21:35107509:+	AF127577.8	68376	chr21:16318876:+	ONLY_REF_SPLICE	YES	69	0	0.27	1	0.1643	0.1517	ITSN1->chr21:35014706-35272165:+,intersectin_1,AF127577.8->chr21:16290855-16319417:+	HCC1954_BREAST	0.27	1	0.316	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	TRMT11--NCOA7	14	8	TRMT11	5532	chr6:126319830:+	NCOA7	27477	chr6:126199409:+	ONLY_REF_SPLICE	YES	54	45	0.29	0.33	0.177	0.1011	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[55310],TRMT11->chr6:126307576-126360422:+,tRNA_methyltransferase_11_homolog,NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7	HCC1954_BREAST	0.29	0.33	0.2781	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	INTS1--PRKAR1B	13	9	INTS1	11132	chr7:1534452:-	PRKAR1B	40707	chr7:751164:-	ONLY_REF_SPLICE	YES	131	1	0.14	0.96	0.1643	0.1138	INTS1->chr7:1509913-1545489:-,integrator_complex_subunit_1,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	HCC1954_BREAST	0.14	0.96	0.2781	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	ATRN--VPS16	11	11	ATRN	20474	chr20:3565527:+	VPS16	42101	chr20:2840365:+	ONLY_REF_SPLICE	YES	120	56	0.15	0.28	0.1391	0.1391	ATRN->attractin,chr20:3451687-3631769:+,VPS16->VPS16,_CORVET/HOPS_core_subunit,chr20:2821349-2847378:+	HCC1954_BREAST	0.15	0.28	0.2782	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	INTS1--PRKAR1B	9	11	INTS1	11132	chr7:1534452:-	PRKAR1B	37799	chr7:756483:-	ONLY_REF_SPLICE	YES	131	1	0.13	0.95	0.1138	0.1391	INTS1->chr7:1509913-1545489:-,integrator_complex_subunit_1,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	HCC1954_BREAST	0.13	0.95	0.2529	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	BRWD1--HLCS	8	14	BRWD1	35204	chr21:40582712:-	HLCS	68824	chr21:38269431:-	ONLY_REF_SPLICE	YES	59	38	0.27	0.37	0.1011	0.177	{Klijn_CCL:Breast=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase	HCC1954_BREAST	0.27	0.37	0.2781	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	GON4L--KIAA0907	9	5	GON4L	3780	chr1:155823067:-	KIAA0907	47622	chr1:155896947:-	ONLY_REF_SPLICE	YES	51	57	0.22	0.2	0.1138	0.0632	LOCAL_REARRANGEMENT:-:[53643],GON4L->chr1:155719508-155829191:-,gon-4_like,KIAA0907->KIAA0907,chr1:155882834-155904191:-	HCC1954_BREAST	0.2	0.22	0.177	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	NAA15--CTC-499J9.1	9	1	NAA15	1377	chr4:140222985:+	CTC-499J9.1	36846	chr5:110618734:-	ONLY_REF_SPLICE	YES	80	0	0.11	1	0.1138	0.0126	NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+,CTC-499J9.1->chr5:110613215-110638265:-	HCC1954_BREAST	0.11	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	NDUFC1--ARL14EPL	9	1	NDUFC1	1136	chr4:140223570:-	ARL14EPL	16047	chr5:115389711:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.1138	0.0126	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,ARL14EPL->ADP_ribosylation_factor_like_GTPase_14_effector_protein_like,chr5:115387163-115395815:+	HCC1954_BREAST	0.91	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	BRWD1--HLCS	6	11	BRWD1	34060	chr21:40584592:-	HLCS	68824	chr21:38269431:-	ONLY_REF_SPLICE	YES	62	38	0.22	0.31	0.0758	0.1391	{Klijn_CCL:Breast=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase	HCC1954_BREAST	0.22	0.31	0.2149	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	OXR1--PCAT2	3	23	OXR1	9783	chr8:107670313:+	PCAT2	34555	chr8:128091378:-	ONLY_REF_SPLICE	YES	179	0	0.13	1	0.0379	0.2907	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,PCAT2->chr8:128084939-128094466:-,prostate_cancer_associated_transcript_2_(non-protein_coding)	HCC1954_BREAST	0.13	1	0.3286	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	PUS7--ATXN7L1	6	9	PUS7	1216	chr7:105162499:-	ATXN7L1	33249	chr7:105305735:-	ONLY_REF_SPLICE	YES	59	6	0.2	0.71	0.0758	0.1138	LOCAL_REARRANGEMENT:-:[82800],PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative),ATXN7L1->ataxin_7_like_1,chr7:105245514-105517050:-	HCC1954_BREAST	0.2	0.71	0.1896	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	SIPA1L3--POU2F2	8	0	SIPA1L3	3094	chr19:38423332:+	POU2F2	41565	chr19:42664544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1011	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,POU2F2->Oncogene{Bushman},POU_class_2_homeobox_2,chr19:42590263-42700737:-	HCC1954_BREAST	1	1	0.1011	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	VPS53--LSMD1	6	8	VPS53	3923	chr17:613773:-	LSMD1	59197	chr17:7760516:-	ONLY_REF_SPLICE	YES	65	189	0.18	0.07	0.0758	0.1011	VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,LSMD1->chr17:7760003-7788556:-	HCC1954_BREAST	0.07	0.18	0.1769	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	ZNRF3--GLDC	8	0	ZNRF3	1475	chr22:29280054:+	GLDC	33596	chr9:6565429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1011	0	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,GLDC->chr9:6532464-6645650:-,glycine_decarboxylase	HCC1954_BREAST	1	1	0.1011	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	CTC-338M12.4--LINC00964	5	8	CTC-338M12.4	1864	chr5:180674386:+	LINC00964	8941	chr8:125861517:+	ONLY_REF_SPLICE	YES	27	0	0.33	1	0.0632	0.1011	CTC-338M12.4->chr5:180673523-180699168:+,LINC00964->chr8:125860979-125966570:+,long_intergenic_non-protein_coding_RNA_964	HCC1954_BREAST	0.33	1	0.1643	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	OXR1--ZNF346	1	23	OXR1	9883	chr8:107670413:+	ZNF346	38324	chr5:176477704:+	ONLY_REF_SPLICE	YES	186	149	0.11	0.14	0.0126	0.2907	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	HCC1954_BREAST	0.11	0.14	0.3033	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	BRWD1--HLCS	3	13	BRWD1	35124	chr21:40582792:-	HLCS	68824	chr21:38269431:-	ONLY_REF_SPLICE	YES	58	38	0.22	0.3	0.0379	0.1643	{Klijn_CCL:Breast=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase	HCC1954_BREAST	0.22	0.3	0.2022	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	IL10RB--AP001596.6	5	5	IL10RB	2747	chr21:34640822:+	AP001596.6	16494	chr21:27760043:+	ONLY_REF_SPLICE	YES	80	0	0.11	1	0.0632	0.0632	IL10RB->chr21:34638663-34669539:+,interleukin_10_receptor_subunit_beta,AP001596.6->chr21:27750871-27844017:+	HCC1954_BREAST	0.11	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	NDUFC1--ARL14EPL	5	4	NDUFC1	2950	chr4:140221756:-	ARL14EPL	16047	chr5:115389711:+	ONLY_REF_SPLICE	YES	14	0	0.39	1	0.0632	0.0506	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,ARL14EPL->ADP_ribosylation_factor_like_GTPase_14_effector_protein_like,chr5:115387163-115395815:+	HCC1954_BREAST	0.39	1	0.1138	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	SUGP2--CARM1	6	0	SUGP2	5741	chr19:19135428:-	CARM1	24511	chr19:11015627:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0758	0	SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	HCC1954_BREAST	1	1	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	OXR1--PCAT2	3	6	OXR1	5884	chr8:107593479:+	PCAT2	34555	chr8:128091378:-	ONLY_REF_SPLICE	YES	28	0	0.24	1	0.0379	0.0758	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,PCAT2->chr8:128084939-128094466:-,prostate_cancer_associated_transcript_2_(non-protein_coding)	HCC1954_BREAST	0.24	1	0.1137	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	IL10RB--AP001596.6	4	1	IL10RB	2747	chr21:34640822:+	AP001596.6	22662	chr21:27843070:+	ONLY_REF_SPLICE	YES	80	1	0.06	0.83	0.0506	0.0126	IL10RB->chr21:34638663-34669539:+,interleukin_10_receptor_subunit_beta,AP001596.6->chr21:27750871-27844017:+	HCC1954_BREAST	0.06	0.83	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	NDUFC1--ARL14EPL	4	1	NDUFC1	1136	chr4:140223570:-	ARL14EPL	14942	chr5:115387154:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0506	0.0126	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,ARL14EPL->ADP_ribosylation_factor_like_GTPase_14_effector_protein_like,chr5:115387163-115395815:+	HCC1954_BREAST	0.83	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	CTC-338M12.4--LINC00964	2	8	CTC-338M12.4	1864	chr5:180674386:+	LINC00964	9411	chr8:125861987:+	ONLY_REF_SPLICE	YES	27	1	0.27	0.91	0.0253	0.1011	CTC-338M12.4->chr5:180673523-180699168:+,LINC00964->chr8:125860979-125966570:+,long_intergenic_non-protein_coding_RNA_964	HCC1954_BREAST	0.27	0.91	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	MCC--MAN2A1	4	0	MCC	12472	chr5:112478915:-	MAN2A1	57911	chr5:109049221:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	MCC->Oncogene{Bushman},chr5:112357796-112824527:-,mutated_in_colorectal_cancers,MAN2A1->chr5:109025067-109205326:+,mannosidase_alpha_class_2A_member_1	HCC1954_BREAST	1	1	0.0506	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	MCC--SNTB1	4	0	MCC	3996	chr5:112720665:-	SNTB1	62305	chr8:121587465:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	MCC->Oncogene{Bushman},chr5:112357796-112824527:-,mutated_in_colorectal_cancers,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	HCC1954_BREAST	1	1	0.0506	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	ZNF790--IGFL4	4	0	ZNF790	1088	chr19:37341602:-	IGFL4	15050	chr19:46563551:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	ZNF790->chr19:37308330-37341689:-,zinc_finger_protein_790,IGFL4->IGF_like_family_member_4,chr19:46543006-46580376:-	HCC1954_BREAST	1	1	0.0506	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	SLC19A1--POFUT2	3	1	SLC19A1	13038	chr21:46934810:-	POFUT2	27560	chr21:46705843:-	ONLY_REF_SPLICE	YES	27	47	0.13	0.08	0.0379	0.0126	SLC19A1->Oncogene{Bushman},chr21:46913486-46964325:-,solute_carrier_family_19_member_1,POFUT2->chr21:46683843-46707813:-,protein_O-fucosyltransferase_2	HCC1954_BREAST	0.08	0.13	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	AKAP8--KRI1	3	0	AKAP8	1086	chr19:15490524:-	KRI1	21037	chr19:10673513:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	AKAP8->A-kinase_anchoring_protein_8,chr19:15464196-15490609:-,KRI1->KRI1_homolog,chr19:10663761-10676713:-	HCC1954_BREAST	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	NDUFC1--ARL14EPL	2	2	NDUFC1	2950	chr4:140221756:-	ARL14EPL	17187	chr5:115394422:+	ONLY_REF_SPLICE	YES	14	11	0.22	0.27	0.0253	0.0253	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,ARL14EPL->ADP_ribosylation_factor_like_GTPase_14_effector_protein_like,chr5:115387163-115395815:+	HCC1954_BREAST	0.22	0.27	0.0506	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	ATP10A--RP11-547C5.2	2	1	ATP10A	6585	chr15:26026166:-	RP11-547C5.2	33345	chr12:43383650:-	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0253	0.0126	ATP10A->ATPase_phospholipid_transporting_10A_(putative),chr15:25922420-26110317:-,RP11-547C5.2->chr12:43373057-43390289:-	HCC1954_BREAST	0.75	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	FAM53A--LETM1	2	1	FAM53A	2848	chr4:1670394:-	LETM1	19147	chr4:1843524:-	ONLY_REF_SPLICE	YES	1	8	0.75	0.27	0.0253	0.0126	FAM53A->chr4:1619642-1686029:-,family_with_sequence_similarity_53_member_A,LETM1->chr4:1813206-1857974:-,leucine_zipper_and_EF-hand_containing_transmembrane_protein_1	HCC1954_BREAST	0.27	0.75	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	IL10RB--AP001597.1	2	1	IL10RB	2747	chr21:34640822:+	AP001597.1	15795	chr21:27875901:+	ONLY_REF_SPLICE	YES	80	0	0.04	1	0.0253	0.0126	IL10RB->chr21:34638663-34669539:+,interleukin_10_receptor_subunit_beta,AP001597.1->chr21:27765954-27941571:+	HCC1954_BREAST	0.04	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	NDUFC1--ARL14EPL	2	1	NDUFC1	1136	chr4:140223570:-	ARL14EPL	17187	chr5:115394422:+	ONLY_REF_SPLICE	YES	1	11	0.75	0.21	0.0253	0.0126	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,ARL14EPL->ADP_ribosylation_factor_like_GTPase_14_effector_protein_like,chr5:115387163-115395815:+	HCC1954_BREAST	0.21	0.75	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	AGO2--CHRAC1	2	0	AGO2	20190	chr8:141549419:-	CHRAC1	28715	chr8:141524468:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	LOCAL_INVERSION:-:+:[14028],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,CHRAC1->chr8:141521397-141527236:+,chromatin_accessibility_complex_1	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	AKAP8--KRI1	2	0	AKAP8	1086	chr19:15490524:-	KRI1	19931	chr19:10675710:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	AKAP8->A-kinase_anchoring_protein_8,chr19:15464196-15490609:-,KRI1->KRI1_homolog,chr19:10663761-10676713:-	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	ATE1--UBAP2L	2	0	ATE1	1958	chr10:123687359:-	UBAP2L	25117	chr1:154197560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	ATE1->arginyltransferase_1,chr10:123499939-123688316:-,UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	BRWD1--HLCS	2	0	BRWD1	22203	chr21:40619627:-	HLCS	68824	chr21:38269431:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	{Klijn_CCL:Breast=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	CALM2--WDR34	2	0	CALM2	1161	chr2:47403580:-	WDR34	16185	chr9:131403218:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,WDR34->WD_repeat_domain_34,chr9:131395940-131419066:-	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	FAAH2--SSX3	1	4	FAAH2	2395	chrX:57319013:+	SSX3	20463	chrX:48211584:-	ONLY_REF_SPLICE	YES	18	1	0.22	0.83	0.0126	0.0506	FAAH2->chrX:57313139-57515629:+,fatty_acid_amide_hydrolase_2,SSX3->chrX:48205863-48216142:-,synovial_sarcoma,_X_breakpoint_3	HCC1954_BREAST	0.22	0.83	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	HKR1--MRPL48	2	0	HKR1	10392	chr19:37826159:+	MRPL48	36424	chr11:73555852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+,MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	IL10RB--AP001596.6	1	4	IL10RB	1157	chr21:34638819:+	AP001596.6	16494	chr21:27760043:+	ONLY_REF_SPLICE	YES	56	0	0.08	1	0.0126	0.0506	IL10RB->chr21:34638663-34669539:+,interleukin_10_receptor_subunit_beta,AP001596.6->chr21:27750871-27844017:+	HCC1954_BREAST	0.08	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	KIAA1217--NUSAP1	2	0	KIAA1217	10097	chr10:24669996:+	NUSAP1	50319	chr15:41667910:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	KIAA1217->KIAA1217,chr10:23983675-24836772:+,NUSAP1->chr15:41624892-41673248:+,nucleolar_and_spindle_associated_protein_1	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	MRPS14--RFWD2	2	0	MRPS14	3492	chr1:174983809:-	RFWD2	21841	chr1:176085817:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	MRPS14->chr1:174979925-174992561:-,mitochondrial_ribosomal_protein_S14,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	NDUFC1--COMMD10	2	0	NDUFC1	1136	chr4:140223570:-	COMMD10	16567	chr5:115423194:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	RBM5--CHORDC1	2	0	RBM5	2544	chr3:50127884:+	CHORDC1	43372	chr11:89936595:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+,CHORDC1->chr11:89934328-89956532:-,cysteine_and_histidine_rich_domain_containing_1	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	SLC6A20--FYCO1	2	0	SLC6A20	5788	chr3:45821501:-	FYCO1	32909	chr3:46006617:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	SLC6A20->chr3:45796942-45838027:-,solute_carrier_family_6_member_20,FYCO1->FYVE_and_coiled-coil_domain_containing_1,chr3:45959396-46037316:-	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	SRCAP--STARD7	2	0	SRCAP	1253	chr16:30709782:+	STARD7	40465	chr2:96853039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+,STARD7->StAR_related_lipid_transfer_domain_containing_7,chr2:96850597-96874563:-	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	TRMT44--SKIL	2	0	TRMT44	4407	chr4:8443168:+	SKIL	27770	chr3:170077487:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	TRMT44->chr4:8437867-8495258:+,tRNA_methyltransferase_44_homolog_(S._cerevisiae),SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	ZNF790--IGFL4	2	0	ZNF790	1786	chr19:37340904:-	IGFL4	15050	chr19:46563551:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	ZNF790->chr19:37308330-37341689:-,zinc_finger_protein_790,IGFL4->IGF_like_family_member_4,chr19:46543006-46580376:-	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	CTC-338M12.4--LINC00964	1	2	CTC-338M12.4	1864	chr5:180674386:+	LINC00964	11905	chr8:125953705:+	ONLY_REF_SPLICE	NO	27	3	0.1	0.5	0.0126	0.0253	CTC-338M12.4->chr5:180673523-180699168:+,LINC00964->chr8:125860979-125966570:+,long_intergenic_non-protein_coding_RNA_964	HCC1954_BREAST	0.1	0.5	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	AC093642.5--BNC2	1	1	AC093642.5	9202	chr2:243081039:+	BNC2	21535	chr9:16583083:-	ONLY_REF_SPLICE	YES	2	6	0.5	0.25	0.0126	0.0126	AC093642.5->chr2:243030784-243102304:+,BNC2->basonuclin_2,chr9:16409501-16870841:-	HCC1954_BREAST	0.25	0.5	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	NDUFC1--COMMD10	1	1	NDUFC1	2950	chr4:140221756:-	COMMD10	16567	chr5:115423194:+	ONLY_REF_SPLICE	YES	14	14	0.12	0.12	0.0126	0.0126	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	HCC1954_BREAST	0.12	0.12	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	RPTOR--USP6	1	1	RPTOR	1973	chr17:78519591:+	USP6	76037	chr17:5064823:+	ONLY_REF_SPLICE	YES	41	0	0.05	1	0.0126	0.0126	RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,USP6->Oncogene{Bushman},chr17:5019733-5078329:+,ubiquitin_specific_peptidase_6	HCC1954_BREAST	0.05	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000859
LN18_CENTRAL_NERVOUS_SYSTEM	NUP93--CYB5B	57	23	NUP93	11281	chr16:56839544:+	CYB5B	32910	chr16:69481053:+	ONLY_REF_SPLICE	YES	127	837	0.39	0.09	0.7911	0.3192	{Klijn_CCL:Brain=1},NUP93->ArcherDX_panel,FoundationOne_panel,chr16:56764017-56878797:+,nucleoporin_93kDa,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	LN18_CENTRAL_NERVOUS_SYSTEM	0.09	0.39	1.1103	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	FBRS--AFG3L1P	32	70	FBRS	3903	chr16:30672654:+	AFG3L1P	26366	chr16:90057274:+	ONLY_REF_SPLICE	YES	54	56	0.65	0.65	0.4441	0.9715	FBRS->chr16:30669752-30682135:+,fibrosin,AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.65	0.65	1.4156	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	FTO--RBFOX1	36	4	FTO	15028	chr16:53968021:+	RBFOX1	33431	chr16:6366996:+	ONLY_REF_SPLICE	YES	84	0	0.32	1	0.4996	0.0555	FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.32	1	0.5551	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	STX17--NR4A3	18	6	STX17	5980	chr9:102691125:+	NR4A3	27210	chr9:102606931:+	ONLY_REF_SPLICE	YES	12	0	0.67	1	0.2498	0.0833	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[39742],STX17->chr9:102668915-102732618:+,syntaxin_17,NR4A3->Oncogene{Bushman},chr9:102584137-102629173:+,nuclear_receptor_subfamily_4_group_A_member_3	LN18_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.3331	TRUE	0	1	0	1	1	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PRSS23--RP11-317J19.1	17	7	PRSS23	8412	chr11:86534635:+	RP11-317J19.1	25495	chr11:86333767:+	ONLY_REF_SPLICE	YES	16	0	0.6	1	0.2359	0.0972	PRSS23->chr11:86502101-86663952:+,protease,_serine_23,RP11-317J19.1->chr11:86142632-86333909:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.3331	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	AHRR--CES5AP1	15	4	AHRR	7866	chr5:376831:+	CES5AP1	30342	chr22:23712649:-	ONLY_REF_SPLICE	YES	26	0	0.42	1	0.2082	0.0555	AHRR->aryl-hydrocarbon_receptor_repressor,chr5:304291-438406:+,CES5AP1->carboxylesterase_5A_pseudogene_1,chr22:23701790-23729918:-	LN18_CENTRAL_NERVOUS_SYSTEM	0.42	1	0.2637	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	FBRS--AFG3L1P	3	43	FBRS	3785	chr16:30672536:+	AFG3L1P	26366	chr16:90057274:+	ONLY_REF_SPLICE	YES	54	56	0.46	0.45	0.0416	0.5968	FBRS->chr16:30669752-30682135:+,fibrosin,AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.45	0.46	0.6384	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RAB11FIP3--FBRS	12	3	RAB11FIP3	7902	chr16:539000:+	FBRS	30602	chr16:30677833:+	ONLY_REF_SPLICE	YES	44	72	0.25	0.17	0.1665	0.0416	RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,FBRS->chr16:30669752-30682135:+,fibrosin	LN18_CENTRAL_NERVOUS_SYSTEM	0.17	0.25	0.2081	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	FBRS--AFG3L1P	5	29	FBRS	3012	chr16:30671763:+	AFG3L1P	26366	chr16:90057274:+	ONLY_REF_SPLICE	YES	51	56	0.4	0.38	0.0694	0.4025	FBRS->chr16:30669752-30682135:+,fibrosin,AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.38	0.4	0.4719	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-314O13.1--RP11-354I13.2	12	0	RP11-314O13.1	1091	chr16:80926402:-	RP11-354I13.2	13403	chr16:60398721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1665	0	RP11-314O13.1->chr16:80862632-80926492:-,RP11-354I13.2->chr16:60393746-60476149:+	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.1665	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	STX17--INVS	11	2	STX17	5980	chr9:102691125:+	INVS	29208	chr9:102988344:+	ONLY_REF_SPLICE	YES	12	14	0.52	0.48	0.1527	0.0278	{Klijn_CCL:Brain=1},STX17->chr9:102668915-102732618:+,syntaxin_17,INVS->chr9:102861538-103063282:+,inversin	LN18_CENTRAL_NERVOUS_SYSTEM	0.48	0.52	0.1805	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	BANP--LONP2	8	0	BANP	21949	chr16:88052273:+	LONP2	36598	chr16:48286042:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.111	0	BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,LONP2->chr16:48278207-48397033:+,lon_peptidase_2,_peroxisomal	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.111	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	CMTM4--CPPED1	5	2	CMTM4	2545	chr16:66670308:-	CPPED1	16429	chr16:12875260:-	ONLY_REF_SPLICE	YES	18	115	0.28	0.06	0.0694	0.0278	CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,CPPED1->calcineurin_like_phosphoesterase_domain_containing_1,chr16:12756919-12897874:-	LN18_CENTRAL_NERVOUS_SYSTEM	0.06	0.28	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PUS1--ULK1	3	9	PUS1	5358	chr12:132423820:+	ULK1	26270	chr12:132403726:+	INCL_NON_REF_SPLICE	YES	56	29	0.18	0.29	0.0416	0.1249	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[6033],PUS1->chr12:132413745-132428406:+,pseudouridylate_synthase_1,ULK1->chr12:132379196-132407712:+,unc-51_like_autophagy_activating_kinase_1	LN18_CENTRAL_NERVOUS_SYSTEM	0.18	0.29	0.1665	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	FBRS--AFG3L1P	1	15	FBRS	3903	chr16:30672654:+	AFG3L1P	26729	chr16:90057637:+	ONLY_REF_SPLICE	YES	54	74	0.23	0.18	0.0139	0.2082	FBRS->chr16:30669752-30682135:+,fibrosin,AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.18	0.23	0.2221	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PUS1--ULK1	4	3	PUS1	5358	chr12:132423820:+	ULK1	26561	chr12:132404017:+	ONLY_REF_SPLICE	YES	56	41	0.11	0.15	0.0555	0.0416	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[6033],PUS1->chr12:132413745-132428406:+,pseudouridylate_synthase_1,ULK1->chr12:132379196-132407712:+,unc-51_like_autophagy_activating_kinase_1	LN18_CENTRAL_NERVOUS_SYSTEM	0.11	0.15	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	AC004158.2--RP11-434E6.2	4	2	AC004158.2	9795	chr16:72556452:-	RP11-434E6.2	19753	chr16:54401571:-	INCL_NON_REF_SPLICE	YES	13	0	0.32	1	0.0555	0.0278	AC004158.2->chr16:72459384-72698908:-,RP11-434E6.2->chr16:54399919-54404611:-	LN18_CENTRAL_NERVOUS_SYSTEM	0.32	1	0.0833	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PANX2--PI4KA	3	6	PANX2	6291	chr22:50618381:+	PI4KA	42447	chr22:21088841:-	INCL_NON_REF_SPLICE	YES	10	36	0.47	0.2	0.0416	0.0833	PANX2->chr22:50609160-50618723:+,pannexin_2,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	LN18_CENTRAL_NERVOUS_SYSTEM	0.2	0.47	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PANX2--PI4KA	3	5	PANX2	5592	chr22:50617682:+	PI4KA	42447	chr22:21088841:-	INCL_NON_REF_SPLICE	YES	15	36	0.35	0.18	0.0416	0.0694	PANX2->chr22:50609160-50618723:+,pannexin_2,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	LN18_CENTRAL_NERVOUS_SYSTEM	0.18	0.35	0.111	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	STX17--INVS	3	4	STX17	5980	chr9:102691125:+	INVS	28120	chr9:102977683:+	ONLY_REF_SPLICE	YES	12	15	0.37	0.32	0.0416	0.0555	{Klijn_CCL:Brain=1},STX17->chr9:102668915-102732618:+,syntaxin_17,INVS->chr9:102861538-103063282:+,inversin	LN18_CENTRAL_NERVOUS_SYSTEM	0.32	0.37	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	HSD17B2--CDH1	3	0	HSD17B2	1686	chr16:82069294:+	CDH1	17796	chr16:68835573:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	{Klijn_CCL:Brain=1},HSD17B2->chr16:82068609-82132139:+,hydroxysteroid_(17-beta)_dehydrogenase_2,CDH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cadherin_1,chr16:68771128-68869451:+	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PUS1--ULK1	1	8	PUS1	5358	chr12:132423820:+	ULK1	26301	chr12:132403757:+	ONLY_REF_SPLICE	YES	56	28	0.14	0.24	0.0139	0.111	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[6033],PUS1->chr12:132413745-132428406:+,pseudouridylate_synthase_1,ULK1->chr12:132379196-132407712:+,unc-51_like_autophagy_activating_kinase_1	LN18_CENTRAL_NERVOUS_SYSTEM	0.14	0.24	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	AC004158.2--RP11-434E6.2	2	2	AC004158.2	9016	chr16:72557231:-	RP11-434E6.2	19753	chr16:54401571:-	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.0278	0.0278	AC004158.2->chr16:72459384-72698908:-,RP11-434E6.2->chr16:54399919-54404611:-	LN18_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-435B5.4--MCPH1	2	1	RP11-435B5.4	4638	chr1:143462284:-	MCPH1	36657	chr8:6478975:+	ONLY_REF_SPLICE	YES	8	18	0.27	0.14	0.0278	0.0139	RP11-435B5.4->chr1:143354963-143467632:-,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	LN18_CENTRAL_NERVOUS_SYSTEM	0.14	0.27	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-435B5.4--MCPH1	2	1	RP11-435B5.4	2843	chr1:143465380:-	MCPH1	36657	chr8:6478975:+	ONLY_REF_SPLICE	YES	8	18	0.27	0.14	0.0278	0.0139	RP11-435B5.4->chr1:143354963-143467632:-,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	LN18_CENTRAL_NERVOUS_SYSTEM	0.14	0.27	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	NAA25--ATXN2	2	0	NAA25	1307	chr12:112546520:-	ATXN2	59283	chr12:111908546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,ATXN2->ataxin_2,chr12:111890018-112037480:-	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	NRG2--UBE2D2	1	4	NRG2	1930	chr5:139421955:-	UBE2D2	25002	chr5:138994171:+	ONLY_REF_SPLICE	YES	7	135	0.42	0.04	0.0139	0.0555	{Klijn_CCL:Brain=1},NRG2->chr5:139226364-139422884:-,neuregulin_2,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	LN18_CENTRAL_NERVOUS_SYSTEM	0.04	0.42	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PDHX--CD44	2	0	PDHX	3068	chr11:34953031:+	CD44	20666	chr11:35198122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	5	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	STX17--INVS	1	4	STX17	5980	chr9:102691125:+	INVS	27644	chr9:102977207:+	ONLY_REF_SPLICE	NO	12	12	0.29	0.29	0.0139	0.0555	{Klijn_CCL:Brain=1},STX17->chr9:102668915-102732618:+,syntaxin_17,INVS->chr9:102861538-103063282:+,inversin	LN18_CENTRAL_NERVOUS_SYSTEM	0.29	0.29	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	HP1BP3--EIF4G3	1	1	HP1BP3	1129	chr1:21113688:-	EIF4G3	28440	chr1:21415706:-	ONLY_REF_SPLICE	YES	52	3	0.04	0.4	0.0139	0.0139	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	LN18_CENTRAL_NERVOUS_SYSTEM	0.04	0.4	0.0278	TRUE	0	2	0	6	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-142I20.1--PRIM2	1	1	RP11-142I20.1	1186	chr18:39211964:-	PRIM2	35368	chr6:57467080:+	ONLY_REF_SPLICE	YES	4	48	0.33	0.04	0.0139	0.0139	RP11-142I20.1->chr18:39047395-39212149:-,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	LN18_CENTRAL_NERVOUS_SYSTEM	0.04	0.33	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000819
MDAMB435S_SKIN	FAM91A1--SORD	27	14	FAM91A1	11508	chr8:124799613:+	SORD	35331	chr15:45360379:+	ONLY_REF_SPLICE	YES	98	132	0.29	0.24	0.3892	0.2018	FAM91A1->chr8:124780696-124827692:+,family_with_sequence_similarity_91_member_A1,SORD->chr15:45315302-45369383:+,sorbitol_dehydrogenase	MDAMB435S_SKIN	0.24	0.29	0.591	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	RHOA--CTD-2521M24.9	21	12	RHOA	2179	chr3:49449253:-	CTD-2521M24.9	14093	chr19:17516886:+	ONLY_REF_SPLICE	YES	728	95	0.04	0.26	0.3027	0.173	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,CTD-2521M24.9->chr19:17516503-17529713:+	MDAMB435S_SKIN	0.04	0.26	0.4757	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	CCAR2--PPP3CC	18	0	CCAR2	1211	chr8:22462355:+	PPP3CC	26311	chr8:22384905:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2595	0	LOCAL_REARRANGEMENT:+:[63493],CCAR2->cell_cycle_and_apoptosis_regulator_2,chr8:22462145-22479027:+,PPP3CC->chr8:22298332-22398652:+,protein_phosphatase_3_catalytic_subunit_gamma	MDAMB435S_SKIN	1	1	0.2595	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	SGSM1--PITPNB	2	1	SGSM1	1216	chr22:25202451:+	PITPNB	44105	chr22:28269803:-	ONLY_REF_SPLICE	YES	0	77	1	0.04	0.0288	0.0144	SGSM1->chr22:25202236-25323545:+,small_G_protein_signaling_modulator_1,PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta	MDAMB435S_SKIN	0.04	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	CTD-2033A16.3--NQO1	2	0	CTD-2033A16.3	1163	chr16:69761078:+	NQO1	8654	chr16:69748980:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	LOCAL_INVERSION:+:-:[62],CTD-2033A16.3->chr16:69760916-69776466:+,NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-	MDAMB435S_SKIN	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	CTD-2033A16.3--NQO1	2	0	CTD-2033A16.3	1163	chr16:69761078:+	NQO1	9768	chr16:69747032:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	LOCAL_INVERSION:+:-:[62],CTD-2033A16.3->chr16:69760916-69776466:+,NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-	MDAMB435S_SKIN	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	DDX3X--USP9X	2	0	DDX3X	3430	chrX:41196718:+	USP9X	64955	chrX:41089754:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	LOCAL_REARRANGEMENT:+:[96819],DDX3X->DEAD-box_helicase_3,_X-linked,chrX:41192651-41223725:+,USP9X->chrX:40944888-41095832:+,ubiquitin_specific_peptidase_9,_X-linked	MDAMB435S_SKIN	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	DNM2--PKD1	2	0	DNM2	23425	chr19:10916643:+	PKD1	42270	chr16:2169379:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	DNM2->chr19:10828755-10944164:+,dynamin_2,PKD1->chr16:2138711-2185899:-,polycystin_1,_transient_receptor_potential_channel_interacting	MDAMB435S_SKIN	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	RP1-1J6.2--ADSL	2	0	RP1-1J6.2	4122	chr20:39762127:-	ADSL	11460	chr22:40745836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	RP1-1J6.2->chr20:39726969-39766643:-,ADSL->adenylosuccinate_lyase,chr22:40742507-40786467:+	MDAMB435S_SKIN	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	SH2D3C--SET	2	0	SH2D3C	3882	chr9:130533465:-	SET	26605	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	SH2D3C->SH2_domain_containing_3C,chr9:130500596-130541020:-,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAMB435S_SKIN	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	LARGE--SHISA8	1	3	LARGE	8508	chr22:34157358:-	SHISA8	40141	chr22:42307353:-	ONLY_REF_SPLICE	YES	15	0	0.21	1	0.0144	0.0432	LARGE->chr22:33558212-34318829:-,like-glycosyltransferase,SHISA8->chr22:42307297-42310570:-,shisa_family_member_8	MDAMB435S_SKIN	0.21	1	0.0576	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	DIP2C--ZMYND11	1	1	DIP2C	1250	chr10:735434:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	YES	8	8	0.2	0.2	0.0144	0.0144	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	MDAMB435S_SKIN	0.2	0.2	0.0288	TRUE	0	0	0	5	0	TRUE	ACH-000884
MDAMB435S_SKIN	DIP2C--ZMYND11	1	1	DIP2C	11762	chr10:459853:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	YES	12	8	0.14	0.2	0.0144	0.0144	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	MDAMB435S_SKIN	0.14	0.2	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	108	84	ABL1	2970	chr9:133710912:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	26	174	0.88	0.52	1.1286	0.8778	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.88	2.0064	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	98	68	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	198	29	0.46	0.85	1.0241	0.7106	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.85	1.7347	TRUE	0	2	1	16	2	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	90	38	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	11	174	0.92	0.42	0.9405	0.3971	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.92	1.3376	TRUE	0	2	0	9	2	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	4	66	BCR	21553	chr22:23632600:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	198	26	0.26	0.73	0.0418	0.6897	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.73	0.7315	TRUE	0	2	1	16	2	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	8	21	ABL1	1510	chr9:133589842:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	11	193	0.72	0.13	0.0836	0.2195	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.72	0.3031	TRUE	0	0	0	6	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	1	48	ABL1	2970	chr9:133710912:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	26	193	0.65	0.2	0.0105	0.5016	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.65	0.5121	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	2	12	ABL1	1510	chr9:133589842:+	BCR	48463	chr22:23651611:+	ONLY_REF_SPLICE	YES	11	322	0.56	0.04	0.0209	0.1254	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.56	0.1463	TRUE	0	1	0	5	1	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBS--ENG	2	0	CBS	12607	chr21:44483063:-	ENG	33502	chr9:130581111:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CBS->chr21:44473301-44497053:-,cystathionine-beta-synthase,ENG->chr9:130577291-130617035:-,endoglin	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCPG1--ZADH2	2	0	CCPG1	1290	chr15:55700419:-	ZADH2	28268	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT6B--CUTC	2	0	KAT6B	22968	chr10:76785007:+	CUTC	33134	chr10:101482675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B,CUTC->chr10:101462315-101515891:+,cutC_copper_transporter	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-784A16.5--C10orf54	2	0	RP4-784A16.5	1143	chr1:53794047:+	C10orf54	11307	chr10:73515223:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	RP4-784A16.5->chr1:53793905-53802181:+,C10orf54->chr10:73507316-73533255:-,chromosome_10_open_reading_frame_54	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL8--NARF	2	0	RPL8	2311	chr8:146016662:-	NARF	19623	chr17:80442689:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	RPL8->chr8:146015150-146017972:-,ribosomal_protein_L8,NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBL1XR1--FAM81A	2	0	TBL1XR1	2134	chr3:176914128:-	FAM81A	42359	chr15:59750749:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,FAM81A->chr15:59664892-59815748:+,family_with_sequence_similarity_81_member_A	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBA5--RPS18	2	0	UBA5	2810	chr3:132378894:+	RPS18	18340	chr6:33240405:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	UBA5->chr3:132373290-132396941:+,ubiquitin_like_modifier_activating_enzyme_5,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB1--BMI1	2	0	ZEB1	1798	chr10:31608221:+	BMI1	31789	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	4	0	TRUE	ACH-000299
HCC56_LARGE_INTESTINE	MADD--WAPAL	111	23	MADD	25698	chr11:47336878:+	WAPAL	55716	chr10:88197772:-	ONLY_REF_SPLICE	YES	83	83	0.62	0.62	1.2201	0.2528	MADD->MAP_kinase_activating_death_domain,chr11:47290712-47351582:+,WAPAL->chr10:88195013-88281572:-	HCC56_LARGE_INTESTINE	0.62	0.62	1.4729	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	IKBKB--ETV6	38	21	IKBKB	18201	chr8:42180012:+	ETV6	32414	chr12:11979336:+	ONLY_REF_SPLICE	YES	138	33	0.3	0.64	0.4177	0.2308	IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	HCC56_LARGE_INTESTINE	0.3	0.64	0.6485	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	IKBKB--ETV6	26	8	IKBKB	18201	chr8:42180012:+	ETV6	33569	chr12:11992074:+	ONLY_REF_SPLICE	YES	138	33	0.2	0.51	0.2858	0.0879	IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	HCC56_LARGE_INTESTINE	0.2	0.51	0.3737	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	AKAP13--PDE8A	21	21	AKAP13	1228	chr15:85924029:+	PDE8A	71637	chr15:85619093:+	ONLY_REF_SPLICE	YES	6	42	0.88	0.5	0.2308	0.2308	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	HCC56_LARGE_INTESTINE	0.5	0.88	0.4616	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	AKAP13--PDE8A	18	14	AKAP13	1228	chr15:85924029:+	PDE8A	73563	chr15:85626787:+	ONLY_REF_SPLICE	YES	6	43	0.84	0.43	0.1979	0.1539	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	HCC56_LARGE_INTESTINE	0.43	0.84	0.3518	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	RAD51-AS1--INO80	17	11	RAD51-AS1	1522	chr15:40986784:-	INO80	38242	chr15:41289799:-	ONLY_REF_SPLICE	YES	18	42	0.61	0.4	0.1869	0.1209	RAD51-AS1->RAD51_antisense_RNA_1_(head_to_head),chr15:40978922-40987305:-,INO80->INO80_complex_subunit,chr15:41271078-41408552:-	HCC56_LARGE_INTESTINE	0.4	0.61	0.3078	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	KIAA1958--HSDL2	13	9	KIAA1958	3467	chr9:115337531:+	HSDL2	31434	chr9:115216293:+	ONLY_REF_SPLICE	YES	25	62	0.47	0.26	0.1429	0.0989	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[14437],KIAA1958->KIAA1958,chr9:115249127-115431677:+,HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2	HCC56_LARGE_INTESTINE	0.26	0.47	0.2418	TRUE	0	0	0	2	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	IKBKB--ETV6	6	20	IKBKB	18201	chr8:42180012:+	ETV6	32419	chr12:11979341:+	INCL_NON_REF_SPLICE	YES	138	33	0.16	0.44	0.066	0.2198	IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	HCC56_LARGE_INTESTINE	0.16	0.44	0.2858	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	MADD--WAPAL	1	10	MADD	24590	chr11:47333393:+	WAPAL	55716	chr10:88197772:-	ONLY_REF_SPLICE	YES	78	83	0.12	0.12	0.011	0.1099	MADD->MAP_kinase_activating_death_domain,chr11:47290712-47351582:+,WAPAL->chr10:88195013-88281572:-	HCC56_LARGE_INTESTINE	0.12	0.12	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	AC073283.4--EPCAM	3	0	AC073283.4	1174	chr2:47572040:-	EPCAM	19843	chr2:47604153:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	HCC56_LARGE_INTESTINE	1	1	0.033	TRUE	0	1	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	C6orf132--GUCA1B	3	0	C6orf132	1320	chr6:42110038:-	GUCA1B	16740	chr6:42156469:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_REARRANGEMENT:-:[41782],C6orf132->chr6:42068856-42110357:-,chromosome_6_open_reading_frame_132,GUCA1B->chr6:42152139-42162654:-,guanylate_cyclase_activator_1B	HCC56_LARGE_INTESTINE	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	MDH2--RPS28	3	0	MDH2	1113	chr7:75677481:+	RPS28	14621	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	MDH2->chr7:75677369-75696826:+,malate_dehydrogenase_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC56_LARGE_INTESTINE	1	1	0.033	TRUE	0	0	0	2	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	AC019221.4--SAG	2	2	AC019221.4	3293	chr2:234299129:+	SAG	8880	chr2:234217808:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.022	0.022	LOCAL_REARRANGEMENT:+:[7519],AC019221.4->chr2:234263220-234301045:+,SAG->Oncogene{Bushman},S-antigen;_retina_and_pineal_gland_(arrestin),chr2:234216462-234255701:+	HCC56_LARGE_INTESTINE	0.8	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	RP11-1379J22.5--SHMT1	2	0	RP11-1379J22.5	1720	chr5:179085482:+	SHMT1	17903	chr17:18236602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RP11-1379J22.5->chr5:179084763-179091433:+,SHMT1->chr17:18231187-18266856:-,serine_hydroxymethyltransferase_1	HCC56_LARGE_INTESTINE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	AKAP13--PDE8A	1	3	AKAP13	1228	chr15:85924029:+	PDE8A	77340	chr15:85641179:+	ONLY_REF_SPLICE	YES	6	55	0.4	0.07	0.011	0.033	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	HCC56_LARGE_INTESTINE	0.07	0.4	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	RNF213--SLC26A11	1	1	RNF213	18646	chr17:78291077:+	SLC26A11	86042	chr17:78199636:+	ONLY_REF_SPLICE	NO	29	3	0.06	0.4	0.011	0.011	LOCAL_REARRANGEMENT:+:[7366],RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,SLC26A11->Oncogene{Bushman},chr17:78193498-78227299:+,solute_carrier_family_26_member_11	HCC56_LARGE_INTESTINE	0.06	0.4	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000467
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	198	50	KMT2A	16644	chr11:118353210:+	AFF1	62543	chr4:88005272:+	ONLY_REF_SPLICE	YES	55	110	0.82	0.69	1.6574	0.4185	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.82	2.0759	TRUE	0	0	0	2	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	25	48	KMT2A	16644	chr11:118353210:+	AFF1	62546	chr4:88005275:+	ONLY_REF_SPLICE	YES	55	105	0.57	0.41	0.2093	0.4018	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.57	0.6111	TRUE	0	0	0	2	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	5	26	KMT2A	16241	chr11:118352807:+	AFF1	62543	chr4:88005272:+	ONLY_REF_SPLICE	YES	39	110	0.44	0.22	0.0419	0.2176	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.44	0.2595	TRUE	0	0	0	2	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-673C5.1--NPM1P40	10	0	RP11-673C5.1	1643	chr15:71457112:-	NPM1P40	5110	chr1:203225334:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0837	0	RP11-673C5.1->chr15:71457109-71457754:-,NPM1P40->chr1:203224871-203225603:+,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_40	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0837	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-673C5.1--NPM1P40	8	0	RP11-673C5.1	1646	chr15:71457109:-	NPM1P40	5104	chr1:203225328:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	RP11-673C5.1->chr15:71457109-71457754:-,NPM1P40->chr1:203224871-203225603:+,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_40	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	7	2	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	31	6	0.23	0.6	0.0586	0.0167	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.6	0.0753	TRUE	0	2	0	11	2	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	3	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	31	0	0.18	1	0.0335	0.0251	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.0586	TRUE	0	3	0	7	3	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	4	CCDC26	6922	chr8:130365050:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	35	6	0.17	0.54	0.0251	0.0335	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.54	0.0586	TRUE	0	0	0	6	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-673C5.1--NPM1P40	4	0	RP11-673C5.1	1616	chr15:71457139:-	NPM1P40	5107	chr1:203225331:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	RP11-673C5.1->chr15:71457109-71457754:-,NPM1P40->chr1:203224871-203225603:+,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_40	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPM1G--HMGB1P5	3	0	PPM1G	4872	chr2:27607539:-	HMGB1P5	11855	chr3:22423814:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	PPM1G->chr2:27604061-27632554:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1G,HMGB1P5->chr3:22423310-22424420:+,high_mobility_group_box_1_pseudogene_5	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STK24--ZNF549	3	0	STK24	10171	chr13:99127075:-	ZNF549	26911	chr19:58046512:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24,ZNF549->chr19:58038693-58068910:+,zinc_finger_protein_549	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	6	CCDC26	4666	chr8:130411760:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	27	0	0.21	1	0.0084	0.0502	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0586	TRUE	0	0	0	4	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC002454.1--GATAD1	2	0	AC002454.1	1081	chr7:92465877:+	GATAD1	8651	chr7:92078066:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	AC002454.1->chr7:92465797-92546501:+,GATAD1->GATA_zinc_finger_domain_containing_1,chr7:92076767-92088150:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATR--U2SURP	2	0	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	10	0	10	7	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	4	CCDC26	4666	chr8:130411760:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	27	6	0.16	0.45	0.0084	0.0335	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.45	0.0419	TRUE	0	0	0	4	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCNB1IP1--LY6E	2	0	CCNB1IP1	6232	chr14:20793698:-	LY6E	21514	chr8:144102731:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1,LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNTT--GTF3C1	2	0	DNTT	1373	chr10:98064457:+	GTF3C1	39539	chr16:27494446:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	DNTT->DNA_nucleotidylexotransferase,chr10:98064085-98098321:+,GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIFC2--C11orf95	2	0	KIFC2	3364	chr8:145693789:+	C11orf95	15490	chr11:63531341:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	KIFC2->chr8:145691426-145699585:+,kinesin_family_member_C2,C11orf95->chr11:63527364-63536113:-,chromosome_11_open_reading_frame_95	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARCH6--SET	2	0	MARCH6	1215	chr5:10354029:+	SET	44236	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	N4BP2--GABPB2	2	0	N4BP2	2302	chr4:40075171:+	GABPB2	34108	chr1:151060666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	N4BP2->NEDD4_binding_protein_2,chr4:40058446-40159872:+,GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--WDSUB1	2	0	NCL	10896	chr2:232321342:-	WDSUB1	26673	chr2:160105023:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	NCL->chr2:232318242-232348352:-,nucleolin,WDSUB1->WD_repeat,_sterile_alpha_motif_and_U-box_domain_containing_1,chr2:160092304-160143310:-	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLE--ANKLE2	2	0	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	11	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--SFPQ	2	0	RUNX1	21108	chr21:36421139:-	SFPQ	57932	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDF4--SSU72	2	0	SDF4	5392	chr1:1158624:-	SSU72	15229	chr1:1500296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	1	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3B3--TXNL4B	2	0	SF3B3	12560	chr16:70578436:+	TXNL4B	40889	chr16:72120701:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3,TXNL4B->chr16:72078188-72128330:-,thioredoxin_like_4B	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SP4--ZNF138	2	0	SP4	3810	chr7:21470461:+	ZNF138	18331	chr7:64291829:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	HGNC_GENEFAM,PROTCLUST,SP4->Sp4_transcription_factor,chr7:21467652-21554440:+,ZNF138->chr7:64254766-64294054:+,zinc_finger_protein_138	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAP1--CTNNBL1	2	0	UBAP1	1236	chr9:34179238:+	CTNNBL1	29766	chr20:36405747:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZRANB3--HDHD2	2	0	ZRANB3	2907	chr2:136261899:-	HDHD2	45957	chr18:44641719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3,HDHD2->chr18:44633774-44676891:-,haloacid_dehalogenase_like_hydrolase_domain_containing_2	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
LN319_CENTRAL_NERVOUS_SYSTEM	MAP3K13--ATR	82	123	MAP3K13	2430	chr3:185003431:+	ATR	80591	chr3:142172075:-	ONLY_REF_SPLICE	YES	119	11	0.63	0.95	1.0247	1.5371	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.63	0.95	2.5618	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	CKS2--ZNF618	41	63	CKS2	1154	chr9:91926266:+	ZNF618	8790	chr9:116750601:+	ONLY_REF_SPLICE	YES	898	2	0.1	0.98	0.5124	0.7873	CKS2->CDC28_protein_kinase_regulatory_subunit_2,Oncogene{Bushman},chr9:91926113-91931618:+,ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618	LN319_CENTRAL_NERVOUS_SYSTEM	0.1	0.98	1.2997	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RERE--TNFRSF9	43	19	RERE	16532	chr1:8568686:-	TNFRSF9	49541	chr1:7980983:-	ONLY_REF_SPLICE	YES	3	0	0.95	1	0.5374	0.2374	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,TNFRSF9->chr1:7979907-8000926:-,tumor_necrosis_factor_receptor_superfamily_member_9	LN319_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.7748	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MAP3K13--ATR	7	131	MAP3K13	7786	chr3:185081156:+	ATR	80591	chr3:142172075:-	ONLY_REF_SPLICE	YES	1	11	0.99	0.93	0.0875	1.637	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.93	0.99	1.7245	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MAP3K13--ATR	1	124	MAP3K13	3578	chr3:185009548:+	ATR	80591	chr3:142172075:-	ONLY_REF_SPLICE	NO	84	11	0.6	0.92	0.0125	1.5496	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.6	0.92	1.5621	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MAP3K13--ATR	7	52	MAP3K13	2430	chr3:185003431:+	ATR	84222	chr3:142168444:-	ONLY_REF_SPLICE	YES	119	19	0.33	0.76	0.0875	0.6498	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.33	0.76	0.7373	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MAP3K13--ATR	1	54	MAP3K13	7786	chr3:185081156:+	ATR	84222	chr3:142168444:-	ONLY_REF_SPLICE	NO	1	19	0.98	0.74	0.0125	0.6748	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.74	0.98	0.6873	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	ZNF618--ZNF484	1	30	ZNF618	12128	chr9:116791252:+	ZNF484	30317	chr9:95637341:-	ONLY_REF_SPLICE	NO	2	2	0.94	0.94	0.0125	0.3749	HGNC_GENEFAM,PROTCLUST,ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618,ZNF484->chr9:95607874-95640304:-,zinc_finger_protein_484	LN319_CENTRAL_NERVOUS_SYSTEM	0.94	0.94	0.3874	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	ZNF618--ZNF484	2	25	ZNF618	12128	chr9:116791252:+	ZNF484	31362	chr9:95618600:-	ONLY_REF_SPLICE	YES	2	3	0.93	0.9	0.025	0.3124	HGNC_GENEFAM,PROTCLUST,ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618,ZNF484->chr9:95607874-95640304:-,zinc_finger_protein_484	LN319_CENTRAL_NERVOUS_SYSTEM	0.9	0.93	0.3374	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	ZNF618--ZNF484	4	11	ZNF618	10076	chr9:116779064:+	ZNF484	30317	chr9:95637341:-	ONLY_REF_SPLICE	YES	18	2	0.45	0.88	0.05	0.1375	HGNC_GENEFAM,PROTCLUST,ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618,ZNF484->chr9:95607874-95640304:-,zinc_finger_protein_484	LN319_CENTRAL_NERVOUS_SYSTEM	0.45	0.88	0.1875	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	ZNF618--ZNF484	3	11	ZNF618	10076	chr9:116779064:+	ZNF484	31362	chr9:95618600:-	ONLY_REF_SPLICE	YES	18	3	0.44	0.82	0.0375	0.1375	HGNC_GENEFAM,PROTCLUST,ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618,ZNF484->chr9:95607874-95640304:-,zinc_finger_protein_484	LN319_CENTRAL_NERVOUS_SYSTEM	0.44	0.82	0.175	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SPTBN4--JAK3	2	5	SPTBN4	13287	chr19:41012293:+	JAK3	56908	chr19:17946024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0.0625	SPTBN4->chr19:40972148-41082370:+,spectrin_beta,_non-erythrocytic_4,JAK3->ArcherDX_panel,FoundationOne_panel,Janus_kinase_3,Oncogene{Bushman},OncomapV4_panel,chr19:17935589-17958880:-	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP5-886K2.3--LUZP1	2	2	RP5-886K2.3	2405	chr1:24098601:-	LUZP1	11468	chr1:23436143:-	ONLY_REF_SPLICE	YES	8	3	0.33	0.57	0.025	0.025	RP5-886K2.3->chr1:24086872-24104777:-,LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1	LN319_CENTRAL_NERVOUS_SYSTEM	0.33	0.57	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	LINC00578--SPIN1	2	0	LINC00578	1190	chr3:177159898:+	SPIN1	13264	chr9:91031559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,SPIN1->chr9:91003334-91093609:+,spindlin_1	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MARCH6--RICTOR	2	0	MARCH6	1215	chr5:10354029:+	RICTOR	40875	chr5:39021238:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MEF2B--SRSF3	2	0	MEF2B	5670	chr19:19291495:-	SRSF3	21870	chr6:36569739:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	MEF2B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:19256377-19303400:-,myocyte_enhancer_factor_2B,SRSF3->Oncogene{Bushman},chr6:36562145-36573377:+,serine/arginine-rich_splicing_factor_3	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	PAPD4--MEG8	2	0	PAPD4	8358	chr5:78919312:+	MEG8	35325	chr14:101402109:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PAPD4->PAP_associated_domain_containing_4,chr5:78907943-78982471:+,MEG8->chr14:101361107-101402336:+,maternally_expressed_8_(non-protein_coding)	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP11-435B5.4--ATAD3B	2	0	RP11-435B5.4	2843	chr1:143465380:-	ATAD3B	31413	chr1:1424584:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	RP11-435B5.4->chr1:143354963-143467632:-,ATAD3B->ATPase_family,_AAA_domain_containing_3B,chr1:1407143-1433228:+	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SP3--OLA1	2	0	SP3	2942	chr2:174828489:-	OLA1	22831	chr2:175094179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SP3->Sp3_transcription_factor,chr2:174771187-174830430:-,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	2	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	STIP1--MFSD10	2	0	STIP1	1999	chr11:63953742:+	MFSD10	16532	chr4:2935671:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1,MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SYNJ2BP--SFPQ	2	0	SYNJ2BP	1162	chr14:70883617:-	SFPQ	22362	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SYNJ2BP->chr14:70838148-70883778:-,synaptojanin_2_binding_protein,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SPTBN4--JAK3	1	3	SPTBN4	13287	chr19:41012293:+	JAK3	58553	chr19:17943738:-	ONLY_REF_SPLICE	NO	0	3	1	0.57	0.0125	0.0375	SPTBN4->chr19:40972148-41082370:+,spectrin_beta,_non-erythrocytic_4,JAK3->ArcherDX_panel,FoundationOne_panel,Janus_kinase_3,Oncogene{Bushman},OncomapV4_panel,chr19:17935589-17958880:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.57	1	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP5-886K2.3--LUZP1	1	2	RP5-886K2.3	2405	chr1:24098601:-	LUZP1	11991	chr1:23435620:-	ONLY_REF_SPLICE	YES	8	16	0.27	0.16	0.0125	0.025	RP5-886K2.3->chr1:24086872-24104777:-,LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1	LN319_CENTRAL_NERVOUS_SYSTEM	0.16	0.27	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SPTBN4--JAK3	1	1	SPTBN4	13287	chr19:41012293:+	JAK3	59684	chr19:17942607:-	ONLY_REF_SPLICE	YES	0	3	1	0.4	0.0125	0.0125	SPTBN4->chr19:40972148-41082370:+,spectrin_beta,_non-erythrocytic_4,JAK3->ArcherDX_panel,FoundationOne_panel,Janus_kinase_3,Oncogene{Bushman},OncomapV4_panel,chr19:17935589-17958880:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.4	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
KELLY_AUTONOMIC_GANGLIA	BAGE2--CTBP2P1	44	12	BAGE2	5645	chr21:11058161:-	CTBP2P1	23085	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	43	0	0.57	1	0.7145	0.1949	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	KELLY_AUTONOMIC_GANGLIA	0.57	1	0.9094	TRUE	0	0	0	6	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	PTPRN2--CYP3A7	32	12	PTPRN2	16301	chr7:157475417:-	CYP3A7	33181	chr7:99328775:-	ONLY_REF_SPLICE	YES	17	0	0.72	1	0.5196	0.1949	PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,CYP3A7->chr7:99302660-99332819:-,cytochrome_P450_family_3_subfamily_A_member_7	KELLY_AUTONOMIC_GANGLIA	0.72	1	0.7145	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	TXNL4A--ME2	17	1	TXNL4A	1099	chr18:77793851:-	ME2	28975	chr18:48466658:+	ONLY_REF_SPLICE	YES	1	44	0.95	0.29	0.2761	0.0162	TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A,ME2->chr18:48405419-48474691:+,malic_enzyme_2	KELLY_AUTONOMIC_GANGLIA	0.29	0.95	0.2923	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	TXNL4A--ME2	13	2	TXNL4A	1099	chr18:77793851:-	ME2	28257	chr18:48465940:+	ONLY_REF_SPLICE	YES	1	51	0.94	0.23	0.2111	0.0325	TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A,ME2->chr18:48405419-48474691:+,malic_enzyme_2	KELLY_AUTONOMIC_GANGLIA	0.23	0.94	0.2436	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	EML5--FOXN3	11	5	EML5	20117	chr14:89154615:-	FOXN3	83496	chr14:89591570:-	ONLY_REF_SPLICE	YES	127	5	0.11	0.76	0.1786	0.0812	EML5->chr14:89078775-89259096:-,echinoderm_microtubule_associated_protein_like_5,FOXN3->chr14:89591215-90085493:-,forkhead_box_N3	KELLY_AUTONOMIC_GANGLIA	0.11	0.76	0.2598	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	EML5--FOXN3	9	6	EML5	20117	chr14:89154615:-	FOXN3	83282	chr14:89591784:-	ONLY_REF_SPLICE	YES	127	1	0.11	0.94	0.1461	0.0974	EML5->chr14:89078775-89259096:-,echinoderm_microtubule_associated_protein_like_5,FOXN3->chr14:89591215-90085493:-,forkhead_box_N3	KELLY_AUTONOMIC_GANGLIA	0.11	0.94	0.2435	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RPRD2--ASPH	10	1	RPRD2	4855	chr1:150390201:+	ASPH	60393	chr8:62465679:-	ONLY_REF_SPLICE	YES	27	7	0.29	0.61	0.1624	0.0162	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	KELLY_AUTONOMIC_GANGLIA	0.29	0.61	0.1786	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	TERT--ALK	9	4	TERT	12588	chr5:1264519:-	ALK	27264	chr2:29606725:-	ONLY_REF_SPLICE	YES	5	28	0.72	0.32	0.1461	0.065	{Klijn_CCL:Brain=1},TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	KELLY_AUTONOMIC_GANGLIA	0.32	0.72	0.2111	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RNF165--DOK6	6	0	RNF165	2507	chr18:43914298:+	DOK6	23417	chr18:67231723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0974	0	RNF165->chr18:43906772-44043103:+,ring_finger_protein_165,DOK6->chr18:67068291-67516323:+,docking_protein_6	KELLY_AUTONOMIC_GANGLIA	1	1	0.0974	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	TERT--ALK	4	0	TERT	11385	chr5:1266579:-	ALK	27264	chr2:29606725:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	{Klijn_CCL:Brain=1},TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	KELLY_AUTONOMIC_GANGLIA	1	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	AKAP9--ANKIB1	3	2	AKAP9	36143	chr7:91700323:+	ANKIB1	67125	chr7:91924203:+	ONLY_REF_SPLICE	YES	25	6	0.17	0.45	0.0487	0.0325	AKAP9->A-kinase_anchoring_protein_9,Oncogene{Bushman},chr7:91570181-91739987:+,ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+	KELLY_AUTONOMIC_GANGLIA	0.17	0.45	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	EML5--FOXN3	2	6	EML5	29718	chr14:89123720:-	FOXN3	83282	chr14:89591784:-	ONLY_REF_SPLICE	YES	115	1	0.07	0.89	0.0325	0.0974	EML5->chr14:89078775-89259096:-,echinoderm_microtubule_associated_protein_like_5,FOXN3->chr14:89591215-90085493:-,forkhead_box_N3	KELLY_AUTONOMIC_GANGLIA	0.07	0.89	0.1299	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	ASPH--RPRD2	3	1	ASPH	36430	chr8:62468483:-	RPRD2	53714	chr1:150413399:+	ONLY_REF_SPLICE	YES	7	26	0.36	0.13	0.0487	0.0162	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2	KELLY_AUTONOMIC_GANGLIA	0.13	0.36	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	TXNL4A--ME2	2	2	TXNL4A	2156	chr18:77790521:-	ME2	28257	chr18:48465940:+	ONLY_REF_SPLICE	YES	3	51	0.57	0.07	0.0325	0.0325	TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A,ME2->chr18:48405419-48474691:+,malic_enzyme_2	KELLY_AUTONOMIC_GANGLIA	0.07	0.57	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	ATP5A1--ILF3	2	0	ATP5A1	4810	chr18:43675019:-	ILF3	27736	chr19:10792669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	ATP5A1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_alpha_subunit_1,_cardiac_muscle,chr18:43664110-43684300:-,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	KELLY_AUTONOMIC_GANGLIA	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	DHCR24--TAF12	2	0	DHCR24	2757	chr1:55349291:-	TAF12	18192	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	KELLY_AUTONOMIC_GANGLIA	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RNF165--DOK6	2	0	RNF165	2507	chr18:43914298:+	DOK6	24525	chr18:67266620:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	RNF165->chr18:43906772-44043103:+,ring_finger_protein_165,DOK6->chr18:67068291-67516323:+,docking_protein_6	KELLY_AUTONOMIC_GANGLIA	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RPRD2--ASPH	1	1	RPRD2	4855	chr1:150390201:+	ASPH	61483	chr8:62460767:-	ONLY_REF_SPLICE	YES	27	9	0.07	0.18	0.0162	0.0162	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	KELLY_AUTONOMIC_GANGLIA	0.07	0.18	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000259
YD8_UPPER_AERODIGESTIVE_TRACT	FGD4--RP11-313F23.4	50	29	FGD4	1431	chr12:32552893:+	RP11-313F23.4	41180	chr12:34344367:-	ONLY_REF_SPLICE	YES	2	11	0.98	0.88	0.7403	0.4294	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP11-313F23.4->chr12:34343972-34371788:-	YD8_UPPER_AERODIGESTIVE_TRACT	0.88	0.98	1.1697	TRUE	0	1	0	1	1	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	FGD4--RP11-313F23.4	13	32	FGD4	1431	chr12:32552893:+	RP11-313F23.4	37841	chr12:34371780:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.1925	0.4738	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP11-313F23.4->chr12:34343972-34371788:-	YD8_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.6663	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	FGD4--RP11-313F23.4	7	30	FGD4	1431	chr12:32552893:+	RP11-313F23.4	38906	chr12:34364956:-	ONLY_REF_SPLICE	YES	2	1	0.95	0.97	0.1036	0.4442	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP11-313F23.4->chr12:34343972-34371788:-	YD8_UPPER_AERODIGESTIVE_TRACT	0.95	0.97	0.5478	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	POMGNT1--GLRX3	3	0	POMGNT1	8947	chr1:46657770:-	GLRX3	19839	chr10:131964771:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0444	0	POMGNT1->chr1:46654354-46685977:-,protein_O-linked_mannose_N-acetylglucosaminyltransferase_1_(beta_1,2-),GLRX3->chr10:131934663-131982785:+,glutaredoxin_3	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0444	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RP11-152P17.2--RP11-127H5.1	2	1	RP11-152P17.2	3511	chr8:106939879:-	RP11-127H5.1	23283	chr8:106258521:+	ONLY_REF_SPLICE	YES	14	0	0.18	1	0.0296	0.0148	RP11-152P17.2->chr8:106792474-107072752:-,RP11-127H5.1->chr8:105602961-106431488:+	YD8_UPPER_AERODIGESTIVE_TRACT	0.18	1	0.0444	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	AC008753.6--POT1	2	0	AC008753.6	1199	chr19:54372163:-	POT1	8424	chr7:124569053:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	AC008753.6->chr19:54357835-54372361:-,POT1->chr7:124462440-124570037:-,protection_of_telomeres_1	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	ANKRD17--ZNF800	2	0	ANKRD17	24087	chr4:73984405:-	ZNF800	53061	chr7:127017383:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	ANKRD17->ankyrin_repeat_domain_17,chr4:73939093-74124515:-,ZNF800->chr7:126986844-127071978:-,zinc_finger_protein_800	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	APOLD1--MT1F	2	0	APOLD1	1180	chr12:12879030:+	MT1F	23273	chr16:56692587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,MT1F->chr16:56691606-56694610:+,metallothionein_1F	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	CASP8--CDK19	2	0	CASP8	1670	chr2:202098835:+	CDK19	29067	chr6:111067404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	CASP8->Oncogene{Bushman},caspase_8,chr2:202098166-202152434:+,CDK19->chr6:110931181-111137161:-,cyclin-dependent_kinase_19	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	DANCR--FSD1L	2	0	DANCR	1530	chr4:53579126:+	FSD1L	25141	chr9:108301544:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,FSD1L->chr9:108210077-108314714:+,fibronectin_type_III_and_SPRY_domain_containing_1_like	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	ITGB1--RP11-313F23.4	2	0	ITGB1	26333	chr10:33197296:-	RP11-313F23.4	36677	chr12:34344367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1,RP11-313F23.4->chr12:34343972-34371788:-	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	KAT2B--TTC29	2	0	KAT2B	14612	chr3:20178544:+	TTC29	33623	chr4:147796080:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	KAT2B->chr3:20081515-20195896:+,lysine_acetyltransferase_2B,TTC29->chr4:147627790-147867034:-,tetratricopeptide_repeat_domain_29	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	LRRC27--AMOTL2	2	0	LRRC27	5691	chr10:134151199:+	AMOTL2	32694	chr3:134090336:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27,AMOTL2->angiomotin_like_2,chr3:134074716-134094321:-	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	PXN--OGDH	2	0	PXN	10891	chr12:120659426:-	OGDH	31371	chr7:44713386:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,OGDH->chr7:44646171-44748665:+,oxoglutarate_dehydrogenase	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RANBP2--MYO10	2	0	RANBP2	25322	chr2:109389502:+	MYO10	51184	chr5:16764505:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	RANBP2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RAN_binding_protein_2,chr2:109335937-109402267:+,MYO10->chr5:16665395-16936372:-,myosin_X	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RP11-386G11.10--SNIP1	2	0	RP11-386G11.10	1431	chr12:49521995:+	SNIP1	9258	chr1:38018348:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	RP11-386G11.10->chr12:49521565-49541652:+,SNIP1->Smad_nuclear_interacting_protein_1,chr1:38000050-38019903:-	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	STIL--CTPS1	2	0	STIL	17008	chr1:47745913:-	CTPS1	46968	chr1:41474331:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	STIL->Oncogene{Bushman},SCL/TAL1_interrupting_locus,chr1:47715811-47779819:-,CTPS1->CTP_synthase_1,chr1:41445007-41478235:+	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	YWHAE--SEPT9	2	0	YWHAE	1332	chr17:1303341:-	SEPT9	20080	chr17:75303223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	ZFP90--ANKRA2	2	0	ZFP90	7336	chr16:68592027:+	ANKRA2	25743	chr5:72849311:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	ZFP90->ZFP90_zinc_finger_protein,chr16:68563993-68609975:+,ANKRA2->ankyrin_repeat_family_A_member_2,chr5:72848160-72861511:-	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	ZNF594--PITPNA	2	0	ZNF594	1452	chr17:5094727:-	PITPNA	16093	chr17:1451681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	ZNF594->chr17:5082831-5095178:-,zinc_finger_protein_594,PITPNA->chr17:1421012-1466110:-,phosphatidylinositol_transfer_protein_alpha	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RP11-152P17.2--RP11-127H5.1	1	1	RP11-152P17.2	1144	chr8:107072609:-	RP11-127H5.1	23283	chr8:106258521:+	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0148	0.0148	RP11-152P17.2->chr8:106792474-107072752:-,RP11-127H5.1->chr8:105602961-106431488:+	YD8_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
KD_SOFT_TISSUE	NSRP1--DNM3OS	3	0	NSRP1	2321	chr17:28443881:+	DNM3OS	22440	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	NSRP1->chr17:28442539-28513493:+,nuclear_speckle_splicing_regulatory_protein_1,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	KD_SOFT_TISSUE	1	1	0.0506	TRUE	0	0	0	1	0	TRUE	ACH-001099
KD_SOFT_TISSUE	ARHGAP12--ZEB1	2	0	ARHGAP12	20269	chr10:32097577:-	ZEB1	38666	chr10:31749966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	ARHGAP12->Rho_GTPase_activating_protein_12,chr10:32094365-32217742:-,ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1	KD_SOFT_TISSUE	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-001099
KD_SOFT_TISSUE	FAM114A1--DNM3OS	2	0	FAM114A1	1158	chr4:38869455:+	DNM3OS	22533	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	FAM114A1->chr4:38869298-38947360:+,family_with_sequence_similarity_114_member_A1,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	KD_SOFT_TISSUE	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-001099
KD_SOFT_TISSUE	IL4R--NSMCE1	2	0	IL4R	1353	chr16:27325341:+	NSMCE1	31038	chr16:27246620:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	LOCAL_INVERSION:+:-:[44874],IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,NSMCE1->NSE1_homolog,_SMC5-SMC6_complex_component,chr16:27236312-27280115:-	KD_SOFT_TISSUE	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-001099
KD_SOFT_TISSUE	RP11-333E1.1--INPP5B	2	0	RP11-333E1.1	1080	chr17:5095458:+	INPP5B	37979	chr1:38334286:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	RP11-333E1.1->chr17:5095379-5151364:+,INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B	KD_SOFT_TISSUE	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-001099
KD_SOFT_TISSUE	FRMD4A--CDNF	1	1	FRMD4A	4125	chr10:14372057:-	CDNF	52127	chr10:14862157:-	ONLY_REF_SPLICE	YES	16	8	0.11	0.2	0.0169	0.0169	FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-,CDNF->cerebral_dopamine_neurotrophic_factor,chr10:14861249-14880574:-	KD_SOFT_TISSUE	0.11	0.2	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-001099
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	VPS13B--RP11-770G2.2	10	7	VPS13B	14529	chr8:100160238:+	RP11-770G2.2	81459	chr11:65538746:+	INCL_NON_REF_SPLICE	YES	7	0	0.71	1	0.1155	0.0809	VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),RP11-770G2.2->chr11:65513200-65539056:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.71	1	0.1964	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	VPS13B--RP11-770G2.2	2	7	VPS13B	14529	chr8:100160238:+	RP11-770G2.2	81376	chr11:65538663:+	ONLY_REF_SPLICE	YES	7	0	0.56	1	0.0231	0.0809	VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),RP11-770G2.2->chr11:65513200-65539056:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	AGAP1--TRPC1	2	0	AGAP1	14318	chr2:236715975:+	TRPC1	41555	chr3:142455221:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,TRPC1->chr3:142442916-142526730:+,transient_receptor_potential_cation_channel_subfamily_C_member_1	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	EIF4A3--ARHGAP32	2	0	EIF4A3	3531	chr17:78115581:-	ARHGAP32	17868	chr11:128993425:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	EIF4A3->chr17:78109013-78120982:-,eukaryotic_translation_initiation_factor_4A3,ARHGAP32->Rho_GTPase_activating_protein_32,chr11:128834955-129149219:-	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	HNRNPA2B1--MAP4K5	2	0	HNRNPA2B1	9018	chr7:26232115:-	MAP4K5	32681	chr14:50915550:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,MAP4K5->chr14:50885219-51027844:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_5	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MECOM--PET112	2	0	MECOM	1283	chr3:169381124:-	PET112	52495	chr4:152609915:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,PET112->chr4:152591656-152682175:-	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	PIGU--SLC39A9	2	0	PIGU	1151	chr20:33264760:-	SLC39A9	26647	chr14:69919958:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,SLC39A9->chr14:69864732-69929105:+,solute_carrier_family_39_member_9	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	SDCBP--GSR	2	0	SDCBP	4943	chr8:59477625:+	GSR	19380	chr8:30569605:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein,GSR->chr8:30535583-30585443:-,glutathione_reductase	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	STARD13--XRN2	2	0	STARD13	4237	chr13:33859607:-	XRN2	53150	chr20:21362632:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-,XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	TRA2B--VPS8	2	0	TRA2B	1312	chr3:185655613:-	VPS8	80519	chr3:184742124:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	2	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	ZC3H18--CNPPD1	2	0	ZC3H18	20370	chr16:88697747:+	CNPPD1	25257	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ZC3H18->chr16:88636789-88698374:+,zinc_finger_CCCH-type_containing_18,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	ZNF431--CMA1	1	1	ZNF431	2256	chr19:21326446:+	CMA1	18717	chr14:24975488:-	ONLY_REF_SPLICE	YES	15	0	0.12	1	0.0116	0.0116	ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431,CMA1->chr14:24974559-24977471:-,chymase_1	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.12	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000732
KNS60_CENTRAL_NERVOUS_SYSTEM	YBX3--KLRC3	190	115	YBX3	16019	chr12:10853853:-	KLRC3	26028	chr12:10565215:-	ONLY_REF_SPLICE	YES	227	0	0.57	1	2.4032	1.4546	YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-,KLRC3->chr12:10564911-10573194:-,killer_cell_lectin_like_receptor_C3	KNS60_CENTRAL_NERVOUS_SYSTEM	0.57	1	3.8578	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	QKI--PARK2	108	41	QKI	2336	chr6:163836367:+	PARK2	42408	chr6:161807909:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.366	0.5186	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Esophagus_-_Muscularis=1},QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PARK2->ArcherDX_panel,FoundationOne_panel,chr6:161768452-163148803:-,parkin_RBR_E3_ubiquitin_protein_ligase	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	1.8846	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	PAIP2--SLC35E1	102	34	PAIP2	1394	chr5:138677669:+	SLC35E1	18307	chr19:16666208:-	ONLY_REF_SPLICE	YES	95	63	0.59	0.68	1.2902	0.4301	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,SLC35E1->chr19:16660642-16683193:-,solute_carrier_family_35_member_E1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.59	0.68	1.7203	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	GUSBP11--AC006946.15	61	55	GUSBP11	15899	chr22:24025912:-	AC006946.15	26169	chr22:17605545:+	ONLY_REF_SPLICE	YES	17	0	0.87	1	0.7716	0.6957	GUSBP11->chr22:23980674-24059543:-,glucuronidase,_beta_pseudogene_11,AC006946.15->chr22:17602476-17612994:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.87	1	1.4673	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	UNC45A--TXNRD1	15	9	UNC45A	5884	chr15:91479690:+	TXNRD1	35742	chr12:104705068:+	ONLY_REF_SPLICE	YES	126	413	0.16	0.05	0.1897	0.1138	UNC45A->chr15:91473410-91497323:+,unc-45_myosin_chaperone_A,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.05	0.16	0.3035	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	PAIP2--SLC35E1	5	34	PAIP2	1394	chr5:138677669:+	SLC35E1	16660	chr19:16667937:-	INCL_NON_REF_SPLICE	YES	95	59	0.29	0.4	0.0632	0.4301	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,SLC35E1->chr19:16660642-16683193:-,solute_carrier_family_35_member_E1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.29	0.4	0.4933	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	ARMC7--SLC16A5	11	4	ARMC7	1655	chr17:73106701:+	SLC16A5	17066	chr17:73100065:+	ONLY_REF_SPLICE	YES	32	0	0.32	1	0.1391	0.0506	LOCAL_REARRANGEMENT:+:[3790],ARMC7->armadillo_repeat_containing_7,chr17:73106047-73126360:+,SLC16A5->chr17:73083822-73102257:+,solute_carrier_family_16_member_5	KNS60_CENTRAL_NERVOUS_SYSTEM	0.32	1	0.1897	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	CTD-2547E10.2--RNF130	9	2	CTD-2547E10.2	1617	chr16:21531149:-	RNF130	35433	chr5:179440311:-	ONLY_REF_SPLICE	YES	6	107	0.65	0.09	0.1138	0.0253	CTD-2547E10.2->chr16:21458004-21531765:-,RNF130->chr5:179338651-179499118:-,ring_finger_protein_130	KNS60_CENTRAL_NERVOUS_SYSTEM	0.09	0.65	0.1391	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	SLC39A11--RP11-84E24.3	8	0	SLC39A11	8636	chr17:71027695:-	RP11-84E24.3	30295	chr17:70033186:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1012	0	SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,RP11-84E24.3->chr17:70026432-70034889:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.1012	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	SRP72--HGSNAT	4	6	SRP72	4075	chr4:57338009:+	HGSNAT	27397	chr8:43016581:+	ONLY_REF_SPLICE	YES	140	35	0.07	0.22	0.0506	0.0759	SRP72->chr4:57333081-57369839:+,signal_recognition_particle_72kDa,HGSNAT->chr8:42995556-43057998:+,heparan-alpha-glucosaminide_N-acetyltransferase	KNS60_CENTRAL_NERVOUS_SYSTEM	0.07	0.22	0.1265	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	STARD9--ULK4P2	5	2	STARD9	24522	chr15:42974773:+	ULK4P2	51285	chr15:30888863:+	ONLY_REF_SPLICE	YES	3	10	0.7	0.41	0.0632	0.0253	STARD9->StAR_related_lipid_transfer_domain_containing_9,chr15:42867857-43013179:+,ULK4P2->ULK4_pseudogene_2,chr15:30864941-30892918:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.41	0.7	0.0885	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	TRAPPC9--PTK2	5	0	TRAPPC9	9369	chr8:141407719:-	PTK2	111851	chr8:141716304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	AC097374.2--AC128677.4	4	1	AC097374.2	1128	chr2:95612959:-	AC128677.4	19023	chr2:92222845:-	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0506	0.0126	AC097374.2->chr2:95533231-95613086:-,AC128677.4->chr2:92222172-92223026:-	KNS60_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	NPAS1--CCDC9	3	3	NPAS1	6284	chr19:47539387:+	CCDC9	15598	chr19:47759780:+	ONLY_REF_SPLICE	YES	6	1	0.5	0.86	0.0379	0.0379	NPAS1->chr19:47523077-47549033:+,neuronal_PAS_domain_protein_1,CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9	KNS60_CENTRAL_NERVOUS_SYSTEM	0.5	0.86	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	VIM-AS1--UBA1	3	1	VIM-AS1	1699	chr10:17271286:-	UBA1	11699	chrX:47053258:+	INCL_NON_REF_SPLICE	NO	4	27	0.5	0.13	0.0379	0.0126	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,UBA1->chrX:47050260-47074527:+,ubiquitin_like_modifier_activating_enzyme_1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.13	0.5	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	AC027612.3--AP000345.1	3	0	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	0	0	0	11	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	GUSBP11--AC006946.15	1	8	GUSBP11	13591	chr22:24032419:-	AC006946.15	26169	chr22:17605545:+	ONLY_REF_SPLICE	NO	25	0	0.26	1	0.0126	0.1012	GUSBP11->chr22:23980674-24059543:-,glucuronidase,_beta_pseudogene_11,AC006946.15->chr22:17602476-17612994:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.26	1	0.1138	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	BTBD8--HFM1	2	1	BTBD8	4929	chr1:92573558:+	HFM1	14660	chr1:91866666:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0253	0.0126	BTBD8->BTB_domain_containing_8,chr1:92545862-92613393:+,HFM1->HFM1,_ATP-dependent_DNA_helicase_homolog,chr1:91726323-91870426:-	KNS60_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	CEP85--PICALM	2	0	CEP85	12669	chr1:26598562:+	PICALM	33320	chr11:85711822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CEP85->centrosomal_protein_85,chr1:26560691-26605299:+,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	CREBL2--EFHC1	2	0	CREBL2	3662	chr12:12788908:+	EFHC1	18686	chr6:52318893:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+,EFHC1->EF-hand_domain_containing_1,chr6:52285106-52387892:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	GEMIN4--CENPI	2	0	GEMIN4	6910	chr17:650407:-	CENPI	28950	chrX:100401142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GEMIN4->chr17:647654-657239:-,gem_nuclear_organelle_associated_protein_4,CENPI->centromere_protein_I,chrX:100353178-100418670:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	GLUD1P3--VCL	2	0	GLUD1P3	1312	chr10:75490631:+	VCL	8593	chr10:75802841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GLUD1P3->chr10:75490320-75497069:+,glutamate_dehydrogenase_1_pseudogene_3,VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	3	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	LRRC34--ZNF639	2	0	LRRC34	5604	chr3:169521841:-	ZNF639	17621	chr3:179045349:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	LRRC34->chr3:169511216-169530774:-,leucine_rich_repeat_containing_34,ZNF639->chr3:179040779-179053323:+,zinc_finger_protein_639	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	PTPN12--PHTF2	2	0	PTPN12	13163	chr7:77230123:+	PHTF2	30144	chr7:77469538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	TNFRSF9--AIMP1	2	0	TNFRSF9	4111	chr1:7997750:-	AIMP1	15743	chr4:107246142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	TNFRSF9->chr1:7979907-8000926:-,tumor_necrosis_factor_receptor_superfamily_member_9,AIMP1->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_1,chr4:107236701-107270383:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	LRP12--RP11-731N10.1	1	1	LRP12	1206	chr8:105601047:-	RP11-731N10.1	23273	chr8:83777885:-	ONLY_REF_SPLICE	YES	19	0	0.1	1	0.0126	0.0126	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,RP11-731N10.1->chr8:83775014-83870931:-	KNS60_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	SLC39A11--CTC-297N7.5	1	1	SLC39A11	18406	chr17:70732789:-	CTC-297N7.5	36930	chr17:10705716:+	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.0126	0.0126	SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,CTC-297N7.5->chr17:10633094-10718481:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000445
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADNP2--NSF	232	35	ADNP2	3112	chr18:77875533:+	NSF	28882	chr17:44782125:+	ONLY_REF_SPLICE	YES	19	26	0.93	0.91	2.1923	0.3307	ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.93	2.523	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADNP2--NSF	7	19	ADNP2	3046	chr18:77875467:+	NSF	28882	chr17:44782125:+	ONLY_REF_SPLICE	YES	11	26	0.7	0.5	0.0661	0.1795	ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.7	0.2456	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADNP2--NSF	11	2	ADNP2	3046	chr18:77875467:+	NSF	34084	chr17:44806265:+	INCL_NON_REF_SPLICE	YES	11	76	0.54	0.15	0.1039	0.0189	ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.54	0.1228	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4D--CTD-2081C10.1	10	3	PDE4D	39303	chr5:58334686:-	CTD-2081C10.1	60771	chr5:53080974:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0945	0.0283	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,CTD-2081C10.1->chr5:53072474-53115516:-	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1228	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYN--RP5-1043L13.1	9	2	LYN	1291	chr8:56792662:+	RP5-1043L13.1	44672	chr20:59102445:+	ONLY_REF_SPLICE	YES	52	0	0.17	1	0.085	0.0189	LYN->ArcherDX_panel,FoundationOne_panel,LYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr8:56792372-56923940:+,RP5-1043L13.1->chr20:58662895-59102516:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.1039	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NSF--ADNP2	8	1	NSF	14236	chr17:44772028:+	ADNP2	31987	chr18:77890986:+	ONLY_REF_SPLICE	YES	26	17	0.26	0.35	0.0756	0.0094	NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.35	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EHD4--PRDM2	5	0	EHD4	1320	chr15:42264457:-	PRDM2	16961	chr1:14042036:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0472	0	EHD4->EH_domain_containing_4,chr15:42190950-42264776:-,PRDM2->Oncogene{Bushman},PR_domain_2,chr1:14026693-14151574:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NALCN-AS1--MAP2K5	3	1	NALCN-AS1	2141	chr13:101392882:+	MAP2K5	24812	chr15:67923226:+	ONLY_REF_SPLICE	YES	0	12	1	0.25	0.0283	0.0094	NALCN-AS1->NALCN_antisense_RNA_1,chr13:101360579-101711638:+,MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001171.1--SON	2	0	AP001171.1	1269	chr21:21630865:-	SON	18234	chr21:34931536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	AP001171.1->chr21:21629065-21631133:-,SON->SON_DNA_binding_protein,chr21:34914924-34949812:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RRP1B--TCF25	2	0	RRP1B	2330	chr21:45089847:+	TCF25	35892	chr16:89967043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RRP1B->chr21:45079429-45115958:+,ribosomal_RNA_processing_1B,TCF25->chr16:89940000-89977792:+,transcription_factor_25	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4D--CTD-2081C10.1	1	1	PDE4D	39303	chr5:58334686:-	CTD-2081C10.1	64040	chr5:53073116:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0094	0.0094	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,CTD-2081C10.1->chr5:53072474-53115516:-	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000641
NCIH1819_LUNG	KPNB1--ZNF595	360	223	KPNB1	11478	chr17:45742524:+	ZNF595	31984	chr4:59323:+	ONLY_REF_SPLICE	YES	1154	771	0.34	0.43	4.3196	2.6757	{Klijn_CCL:Lung=1},KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	NCIH1819_LUNG	0.34	0.43	6.9953	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	ITFG1--RP11-435B5.7	79	62	ITFG1	24389	chr16:47271876:-	RP11-435B5.7	33894	chr1:143533272:-	ONLY_REF_SPLICE	YES	283	0	0.33	1	0.9479	0.7439	ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1,RP11-435B5.7->chr1:143527555-143533272:-	NCIH1819_LUNG	0.33	1	1.6918	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	WIPF2--FMNL1	61	45	WIPF2	1189	chr17:38375744:+	FMNL1	21700	chr17:43307971:+	ONLY_REF_SPLICE	YES	20	25	0.84	0.81	0.7319	0.5399	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,FMNL1->chr17:43298811-43324687:+,formin_like_1	NCIH1819_LUNG	0.81	0.84	1.2718	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	ZMAT3--CLDN11	53	28	ZMAT3	3280	chr3:178785271:-	CLDN11	32805	chr3:170425833:+	ONLY_REF_SPLICE	YES	90	14	0.47	0.85	0.6359	0.336	ZMAT3->chr3:178735011-178790067:-,zinc_finger_matrin-type_3,CLDN11->chr3:170136653-170578169:+,claudin_11	NCIH1819_LUNG	0.47	0.85	0.9719	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	RP11-435B5.4--DAB1	41	34	RP11-435B5.4	2843	chr1:143465380:-	DAB1	32542	chr1:57756838:-	ONLY_REF_SPLICE	YES	41	1	0.65	0.99	0.492	0.408	RP11-435B5.4->chr1:143354963-143467632:-,DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-	NCIH1819_LUNG	0.65	0.99	0.9	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	ZRANB2-AS2--CA10	48	4	ZRANB2-AS2	2131	chr1:71557387:+	CA10	47322	chr17:49731097:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.5759	0.048	ZRANB2-AS2->ZRANB2_antisense_RNA_2_(head_to_head),chr1:71547007-71955652:+,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	NCIH1819_LUNG	0.98	1	0.6239	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	GTF2I--GTF2IRD1	35	0	GTF2I	1401	chr7:74072394:+	GTF2IRD1	55548	chr7:73944064:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.42	0	PROTCLUST,LOCAL_REARRANGEMENT:+:[55063],GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi,GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+	NCIH1819_LUNG	1	1	0.42	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	PAWR--LINC00504	26	17	PAWR	9188	chr12:80007355:-	LINC00504	28840	chr4:14861240:-	ONLY_REF_SPLICE	YES	206	0	0.17	1	0.312	0.204	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,LINC00504->chr4:14472089-14889793:-,long_intergenic_non-protein_coding_RNA_504	NCIH1819_LUNG	0.17	1	0.516	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	ITFG1--RP11-435B5.7	11	62	ITFG1	24389	chr16:47271876:-	RP11-435B5.7	33862	chr1:143533304:-	INCL_NON_REF_SPLICE	YES	283	0	0.21	1	0.132	0.7439	ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1,RP11-435B5.7->chr1:143527555-143533272:-	NCIH1819_LUNG	0.21	1	0.8759	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	WIPF2--FMNL1	7	45	WIPF2	1189	chr17:38375744:+	FMNL1	20354	chr17:43299275:+	ONLY_REF_SPLICE	YES	20	0	0.72	1	0.084	0.5399	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,FMNL1->chr17:43298811-43324687:+,formin_like_1	NCIH1819_LUNG	0.72	1	0.6239	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	RP11-435B5.4--DAB1	7	41	RP11-435B5.4	4638	chr1:143462284:-	DAB1	32542	chr1:57756838:-	ONLY_REF_SPLICE	YES	20	1	0.71	0.98	0.084	0.492	RP11-435B5.4->chr1:143354963-143467632:-,DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-	NCIH1819_LUNG	0.71	0.98	0.576	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	WIPF2--FMNL1	5	47	WIPF2	1214	chr17:38375769:+	FMNL1	21700	chr17:43307971:+	ONLY_REF_SPLICE	YES	21	25	0.71	0.68	0.06	0.5639	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,FMNL1->chr17:43298811-43324687:+,formin_like_1	NCIH1819_LUNG	0.68	0.71	0.6239	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	CTC-559E9.6--CREM	10	17	CTC-559E9.6	2476	chr19:19897500:+	CREM	13664	chr10:35437296:+	ONLY_REF_SPLICE	YES	4	62	0.87	0.3	0.12	0.204	CTC-559E9.6->chr19:19887411-19945736:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	NCIH1819_LUNG	0.3	0.87	0.324	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	RRAGD--MEI4	11	2	RRAGD	1425	chr6:90121565:-	MEI4	15242	chr6:78400375:+	ONLY_REF_SPLICE	YES	45	0	0.22	1	0.132	0.024	RRAGD->Ras_related_GTP_binding_D,chr6:90074355-90121989:-,MEI4->chr6:78400375-78636691:+,meiotic_double-stranded_break_formation_protein_4	NCIH1819_LUNG	0.22	1	0.156	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	TTC6--MIPOL1	10	4	TTC6	2242	chr14:38075947:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	3	49	0.82	0.22	0.12	0.048	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	NCIH1819_LUNG	0.22	0.82	0.168	TRUE	0	3	0	4	3	TRUE	ACH-000033
NCIH1819_LUNG	CTC-559E9.6--CREM	4	18	CTC-559E9.6	4541	chr19:19900630:+	CREM	13664	chr10:35437296:+	ONLY_REF_SPLICE	YES	1	62	0.96	0.26	0.048	0.216	CTC-559E9.6->chr19:19887411-19945736:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	NCIH1819_LUNG	0.26	0.96	0.264	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	ZRANB2-AS2--CA10	6	6	ZRANB2-AS2	3253	chr1:71558934:+	CA10	47322	chr17:49731097:-	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.072	0.072	ZRANB2-AS2->ZRANB2_antisense_RNA_2_(head_to_head),chr1:71547007-71955652:+,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	NCIH1819_LUNG	0.8	1	0.144	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	CTC-559E9.6--CREM	4	13	CTC-559E9.6	1393	chr19:19887803:+	CREM	13664	chr10:35437296:+	ONLY_REF_SPLICE	YES	5	62	0.77	0.22	0.048	0.156	CTC-559E9.6->chr19:19887411-19945736:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	NCIH1819_LUNG	0.22	0.77	0.204	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	TRIM37--TMEM186	5	7	TRIM37	2583	chr17:57181654:-	TMEM186	39614	chr16:8874618:-	ONLY_REF_SPLICE	YES	110	5	0.1	0.71	0.06	0.084	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,TMEM186->chr16:8874241-8891505:-,transmembrane_protein_186	NCIH1819_LUNG	0.1	0.71	0.144	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	CTC-559E9.6--CREM	1	20	CTC-559E9.6	2476	chr19:19897500:+	CREM	12566	chr10:35426710:+	ONLY_REF_SPLICE	YES	4	66	0.84	0.24	0.012	0.24	CTC-559E9.6->chr19:19887411-19945736:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	NCIH1819_LUNG	0.24	0.84	0.252	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	EMP2--KRT18	6	0	EMP2	3453	chr16:10641393:-	KRT18	17507	chr12:53342924:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.072	0	EMP2->chr16:10622279-10674555:-,epithelial_membrane_protein_2,KRT18->chr12:53342655-53346685:+,keratin_18	NCIH1819_LUNG	1	1	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	ARHGEF26--PLCH1	5	3	ARHGEF26	5259	chr3:153847508:+	PLCH1	52879	chr3:155093578:-	ONLY_REF_SPLICE	YES	45	0	0.15	1	0.06	0.036	ARHGEF26->Rho_guanine_nucleotide_exchange_factor_26,chr3:153838792-153975616:+,PLCH1->chr3:155093369-155462856:-,phospholipase_C_eta_1	NCIH1819_LUNG	0.15	1	0.096	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	AP000350.4--PKM	4	4	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	48	1	0.14	0.048	0.048	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	NCIH1819_LUNG	0.14	1	0.096	TRUE	0	0	0	14	0	TRUE	ACH-000033
NCIH1819_LUNG	RCC1--GNAS	5	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.06	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1819_LUNG	1	1	0.06	TRUE	0	3	0	13	2	TRUE	ACH-000033
NCIH1819_LUNG	ZMAT3--CLDN11	3	8	ZMAT3	3280	chr3:178785271:-	CLDN11	38176	chr3:170577772:+	ONLY_REF_SPLICE	YES	90	16	0.11	0.41	0.036	0.096	ZMAT3->chr3:178735011-178790067:-,zinc_finger_matrin-type_3,CLDN11->chr3:170136653-170578169:+,claudin_11	NCIH1819_LUNG	0.11	0.41	0.132	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	CTC-559E9.6--CREM	1	15	CTC-559E9.6	1393	chr19:19887803:+	CREM	12566	chr10:35426710:+	ONLY_REF_SPLICE	YES	5	66	0.76	0.2	0.012	0.18	CTC-559E9.6->chr19:19887411-19945736:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	NCIH1819_LUNG	0.2	0.76	0.192	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	ITFG1--RP11-435B5.7	2	10	ITFG1	24389	chr16:47271876:-	RP11-435B5.7	35098	chr1:143529235:-	ONLY_REF_SPLICE	YES	283	2	0.04	0.86	0.024	0.12	ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1,RP11-435B5.7->chr1:143527555-143533272:-	NCIH1819_LUNG	0.04	0.86	0.144	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	ZMAT3--CLDN11	2	10	ZMAT3	3280	chr3:178785271:-	CLDN11	33956	chr3:170443349:+	ONLY_REF_SPLICE	YES	90	18	0.12	0.4	0.024	0.12	ZMAT3->chr3:178735011-178790067:-,zinc_finger_matrin-type_3,CLDN11->chr3:170136653-170578169:+,claudin_11	NCIH1819_LUNG	0.12	0.4	0.144	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	MYO10--AP001347.6	2	9	MYO10	20053	chr5:16758227:-	AP001347.6	56325	chr21:15515830:+	ONLY_REF_SPLICE	YES	26	6	0.3	0.65	0.024	0.108	MYO10->chr5:16665395-16936372:-,myosin_X,AP001347.6->chr21:15399742-15516789:+	NCIH1819_LUNG	0.3	0.65	0.132	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	TRIM37--TMEM186	2	9	TRIM37	2583	chr17:57181654:-	TMEM186	38931	chr16:8875301:-	ONLY_REF_SPLICE	YES	110	0	0.09	1	0.024	0.108	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,TMEM186->chr16:8874241-8891505:-,transmembrane_protein_186	NCIH1819_LUNG	0.09	1	0.132	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	RRAGD--MEI4	4	0	RRAGD	1425	chr6:90121565:-	MEI4	16488	chr6:78470847:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.048	0	RRAGD->Ras_related_GTP_binding_D,chr6:90074355-90121989:-,MEI4->chr6:78400375-78636691:+,meiotic_double-stranded_break_formation_protein_4	NCIH1819_LUNG	1	1	0.048	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	PAWR--LINC00504	2	7	PAWR	9188	chr12:80007355:-	LINC00504	31415	chr4:14702405:-	ONLY_REF_SPLICE	YES	206	0	0.04	1	0.024	0.084	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,LINC00504->chr4:14472089-14889793:-,long_intergenic_non-protein_coding_RNA_504	NCIH1819_LUNG	0.04	1	0.108	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	LRBA--PET112	3	2	LRBA	15188	chr4:151818891:-	PET112	80372	chr4:152640690:-	ONLY_REF_SPLICE	YES	24	128	0.17	0.04	0.036	0.024	LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,PET112->chr4:152591656-152682175:-	NCIH1819_LUNG	0.04	0.17	0.06	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	TTC6--MIPOL1	3	2	TTC6	1162	chr14:38065213:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	2	49	0.71	0.09	0.036	0.024	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	NCIH1819_LUNG	0.09	0.71	0.06	TRUE	0	3	0	4	2	TRUE	ACH-000033
NCIH1819_LUNG	C17orf76-AS1--ANXA2	3	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIH1819_LUNG	1	1	0.036	TRUE	0	0	0	10	0	TRUE	ACH-000033
NCIH1819_LUNG	TTC6--MIPOL1	2	2	TTC6	2242	chr14:38075947:+	MIPOL1	77335	chr14:37892060:+	ONLY_REF_SPLICE	YES	3	62	0.57	0.06	0.024	0.024	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	NCIH1819_LUNG	0.06	0.57	0.048	TRUE	0	4	0	4	2	TRUE	ACH-000033
NCIH1819_LUNG	ABAT--MSI2	2	0	ABAT	1147	chr16:8768568:+	MSI2	56247	chr17:55607037:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	ABAT->4-aminobutyrate_aminotransferase,chr16:8768422-8878432:+,MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2	NCIH1819_LUNG	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	HNRNPA2B1--GNAS	2	0	HNRNPA2B1	1958	chr7:26240192:-	GNAS	30423	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1819_LUNG	1	1	0.024	TRUE	0	0	0	3	0	TRUE	ACH-000033
NCIH1819_LUNG	PRKDC--FAM73A	2	0	PRKDC	23220	chr8:48824970:-	FAM73A	91428	chr1:78267016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,FAM73A->chr1:78245309-78344106:+,family_with_sequence_similarity_73_member_A	NCIH1819_LUNG	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	SHROOM3--CCNI	2	0	SHROOM3	6004	chr4:77507622:+	CCNI	34951	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx&tcga_normals:1/3694=0.03%,SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,CCNI->chr4:77968311-77997158:-,cyclin_I	NCIH1819_LUNG	1	1	0.024	TRUE	0	1	0	3	0	TRUE	ACH-000033
NCIH1819_LUNG	THRA--ZPBP2	2	0	THRA	6927	chr17:38230794:+	ZPBP2	23789	chr17:38027717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,ZPBP2->chr17:38024417-38034149:+,zona_pellucida_binding_protein_2	NCIH1819_LUNG	1	1	0.024	TRUE	0	0	0	2	0	TRUE	ACH-000033
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EBF1--RP11-526F3.1	36	14	EBF1	11419	chr5:158223353:-	RP11-526F3.1	26589	chr5:111585295:+	ONLY_REF_SPLICE	YES	27	0	0.65	1	0.4891	0.1902	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,RP11-526F3.1->chr5:111563980-111593006:+	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.6793	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	21	0	IGH@	97640	chr14:106321054:-	TMSB4X	131816	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2853	0	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2853	TRUE	0	0	0	6	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAH11--PHF14	15	5	DNAH11	64105	chr7:21828960:+	PHF14	109119	chr7:11101418:+	ONLY_REF_SPLICE	YES	0	21	1	0.49	0.2038	0.0679	DNAH11->chr7:21582833-21941457:+,dynein_axonemal_heavy_chain_11,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	1	0.2717	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPA3-AS1--DNAH11	14	5	RPA3-AS1	3140	chr7:7713084:+	DNAH11	78161	chr7:21824045:+	ONLY_REF_SPLICE	YES	26	0	0.42	1	0.1902	0.0679	RPA3-AS1->chr7:7680342-8043689:+,DNAH11->chr7:21582833-21941457:+,dynein_axonemal_heavy_chain_11	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.2581	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	5	0	IGH@	97649	chr14:106321045:-	TMSB4X	131824	chrX:12993249:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0679	TRUE	0	0	0	6	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--TBCA	2	0	C17orf76-AS1	1593	chr17:16342728:+	TBCA	16867	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	C17orf76-AS1->chr17:16342136-16381992:+,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL4A3BP--GLDC	2	0	COL4A3BP	3162	chr5:74801807:-	GLDC	34678	chr9:6605278:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	COL4A3BP->chr5:74664311-74807963:-,collagen_type_IV_alpha_3_binding_protein,GLDC->chr9:6532464-6645650:-,glycine_decarboxylase	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSG2--B4GALT6	2	0	DSG2	1254	chr18:29078259:+	B4GALT6	24454	chr18:29246335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	LOCAL_INVERSION:+:-:[73239],DSG2->Oncogene{Bushman},chr18:29078006-29128971:+,desmoglein_2,B4GALT6->beta-1,4-galactosyltransferase_6,chr18:29202210-29265799:-	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHRF1--PPP1R12C	2	0	PHRF1	1107	chr11:576592:+	PPP1R12C	30595	chr19:55607703:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	1	1	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	4	3	0.33	0.4	0.0136	0.0136	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.4	0.0272	TRUE	0	0	0	9	0	TRUE	ACH-000346
NCIH2085_LUNG	PDE4D--ADAMTS6	43	11	PDE4D	46191	chr5:58284320:-	ADAMTS6	68741	chr5:64595958:-	ONLY_REF_SPLICE	YES	9	9	0.86	0.86	0.3639	0.0931	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,ADAMTS6->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_6,chr5:64444563-64777747:-	NCIH2085_LUNG	0.86	0.86	0.457	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	PPIL2--CCK	18	9	PPIL2	13661	chr22:22035679:+	CCK	31550	chr3:42306929:-	ONLY_REF_SPLICE	YES	34	11	0.44	0.71	0.1523	0.0762	PPIL2->chr22:22006559-22054304:+,peptidylprolyl_isomerase_like_2,CCK->cholecystokinin,chr3:42299317-42307699:-	NCIH2085_LUNG	0.44	0.71	0.2285	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	ABHD12--SCFD2	17	4	ABHD12	12816	chr20:25287469:-	SCFD2	24343	chr4:54179930:-	ONLY_REF_SPLICE	YES	94	50	0.18	0.3	0.1439	0.0339	ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-,SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2	NCIH2085_LUNG	0.18	0.3	0.1778	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	CDC42BPA--TP53BP2	15	11	CDC42BPA	2470	chr1:227504706:-	TP53BP2	56709	chr1:224009069:-	ONLY_REF_SPLICE	YES	26	28	0.5	0.48	0.1269	0.0931	CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-,TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2	NCIH2085_LUNG	0.48	0.5	0.22	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	ARF3--WNT1	14	4	ARF3	1242	chr12:49351093:-	WNT1	15684	chr12:49374207:+	ONLY_REF_SPLICE	YES	87	8	0.17	0.69	0.1185	0.0339	LOCAL_INVERSION:-:+:[21064],ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,WNT1->Oncogene{Bushman},Wnt_family_member_1,chr12:49372398-49375459:+	NCIH2085_LUNG	0.17	0.69	0.1524	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	PBX1--OLFML2B	14	3	PBX1	4894	chr1:164532548:+	OLFML2B	54847	chr1:161976263:-	ONLY_REF_SPLICE	YES	15	2	0.53	0.89	0.1185	0.0254	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,OLFML2B->chr1:161952982-161993644:-,olfactomedin_like_2B	NCIH2085_LUNG	0.53	0.89	0.1439	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	HHAT--PLXNA2	13	1	HHAT	14836	chr1:210797014:+	PLXNA2	55860	chr1:208202387:-	ONLY_REF_SPLICE	YES	16	19	0.47	0.42	0.11	0.0085	HHAT->chr1:210501596-210849638:+,hedgehog_acyltransferase,PLXNA2->chr1:208195587-208417665:-,plexin_A2	NCIH2085_LUNG	0.42	0.47	0.1185	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	SYT14--MROH9	8	2	SYT14	6138	chr1:210194599:+	MROH9	25025	chr1:170931031:+	ONLY_REF_SPLICE	YES	12	0	0.45	1	0.0677	0.0169	SYT14->chr1:210111538-210337636:+,synaptotagmin_14,MROH9->chr1:170904612-171033906:+,maestro_heat_like_repeat_family_member_9	NCIH2085_LUNG	0.45	1	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	PPIL2--CCK	5	12	PPIL2	13661	chr22:22035679:+	CCK	31062	chr3:42307417:-	INCL_NON_REF_SPLICE	YES	34	22	0.33	0.44	0.0423	0.1016	PPIL2->chr22:22006559-22054304:+,peptidylprolyl_isomerase_like_2,CCK->cholecystokinin,chr3:42299317-42307699:-	NCIH2085_LUNG	0.33	0.44	0.1439	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	PPIL2--CCK	5	12	PPIL2	13661	chr22:22035679:+	CCK	31073	chr3:42307406:-	INCL_NON_REF_SPLICE	YES	34	25	0.33	0.4	0.0423	0.1016	PPIL2->chr22:22006559-22054304:+,peptidylprolyl_isomerase_like_2,CCK->cholecystokinin,chr3:42299317-42307699:-	NCIH2085_LUNG	0.33	0.4	0.1439	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	WDR27--NPIPB4	6	0	WDR27	31192	chr6:169972515:-	NPIPB4	42153	chr16:21875166:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0508	0	WDR27->WD_repeat_domain_27,chr6:169857307-170102159:-,NPIPB4->chr16:21845890-21892148:-,nuclear_pore_complex_interacting_protein_family_member_B4	NCIH2085_LUNG	1	1	0.0508	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	AP000525.9--LA16c-60G3.6	5	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH2085_LUNG	1	1	0.0423	TRUE	0	5	0	18	5	TRUE	ACH-000451
NCIH2085_LUNG	PPIL2--CCK	3	8	PPIL2	12569	chr22:22029404:+	CCK	31550	chr3:42306929:-	ONLY_REF_SPLICE	YES	68	11	0.14	0.5	0.0254	0.0677	PPIL2->chr22:22006559-22054304:+,peptidylprolyl_isomerase_like_2,CCK->cholecystokinin,chr3:42299317-42307699:-	NCIH2085_LUNG	0.14	0.5	0.0931	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	PPIL2--CCK	5	0	PPIL2	12569	chr22:22029404:+	CCK	33355	chr3:42305124:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	PPIL2->chr22:22006559-22054304:+,peptidylprolyl_isomerase_like_2,CCK->cholecystokinin,chr3:42299317-42307699:-	NCIH2085_LUNG	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	ARF3--WNT1	3	4	ARF3	1242	chr12:49351093:-	WNT1	14728	chr12:49373251:+	ONLY_REF_SPLICE	YES	87	1	0.07	0.88	0.0254	0.0339	LOCAL_INVERSION:-:+:[21064],ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,WNT1->Oncogene{Bushman},Wnt_family_member_1,chr12:49372398-49375459:+	NCIH2085_LUNG	0.07	0.88	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	PBX1--OLFML2B	2	3	PBX1	23014	chr1:164742259:+	OLFML2B	54847	chr1:161976263:-	ONLY_REF_SPLICE	YES	22	2	0.19	0.71	0.0169	0.0254	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,OLFML2B->chr1:161952982-161993644:-,olfactomedin_like_2B	NCIH2085_LUNG	0.19	0.71	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	PBX1--OLFML2B	2	3	PBX1	10299	chr1:164595333:+	OLFML2B	54847	chr1:161976263:-	ONLY_REF_SPLICE	YES	22	2	0.19	0.71	0.0169	0.0254	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,OLFML2B->chr1:161952982-161993644:-,olfactomedin_like_2B	NCIH2085_LUNG	0.19	0.71	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	ABHD12--SCFD2	2	0	ABHD12	11242	chr20:25289093:-	SCFD2	24343	chr4:54179930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-,SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	AK4--ZNF529	2	0	AK4	1117	chr1:65613348:+	ZNF529	25876	chr19:37047099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	AK4->adenylate_kinase_4,chr1:65613232-65697828:+,ZNF529->chr19:37025676-37096178:-,zinc_finger_protein_529	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	COL5A1--EHMT1	2	0	COL5A1	7112	chr9:137593179:+	EHMT1	108154	chr9:140728801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	FUS--GNAS	2	0	FUS	1118	chr16:31191548:+	GNAS	30364	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	KIAA1731--WHSC1	2	0	KIAA1731	21008	chr11:93454578:+	WHSC1	69140	chr4:1976590:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	KIAA1731->chr11:93394805-93463522:+,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	2	0	TRUE	ACH-000451
NCIH2085_LUNG	PEG10--C18orf8	2	0	PEG10	1256	chr7:94285892:+	C18orf8	12492	chr18:21084335:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10,C18orf8->chr18:21083473-21111746:+,chromosome_18_open_reading_frame_8	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	RRAGB--MKI67	2	0	RRAGB	1681	chrX:55744852:+	MKI67	19633	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	RRAGB->Ras_related_GTP_binding_B,chrX:55744172-55785207:+,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	XRCC6--RBX1	2	0	XRCC6	1968	chr22:42018090:+	RBX1	19595	chr22:41360051:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
SW1463_LARGE_INTESTINE	RPL36AL--LRR1	14	0	RPL36AL	1124	chr14:50087280:-	LRR1	11378	chr14:50074118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3224	0	LOCAL_INVERSION:-:+:[3847],RPL36AL->chr14:50085237-50087403:-,ribosomal_protein_L36a_like,LRR1->chr14:50065415-50081390:+,leucine_rich_repeat_protein_1	SW1463_LARGE_INTESTINE	1	1	0.3224	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	LRR1--RPL36AL	7	7	LRR1	4564	chr14:50069186:+	RPL36AL	14048	chr14:50085858:-	ONLY_REF_SPLICE	YES	9	1	0.61	0.93	0.1612	0.1612	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_INVERSION:+:-:[3847],LRR1->chr14:50065415-50081390:+,leucine_rich_repeat_protein_1,RPL36AL->chr14:50085237-50087403:-,ribosomal_protein_L36a_like	SW1463_LARGE_INTESTINE	0.61	0.93	0.3224	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	ARHGAP35--VRK3	5	1	ARHGAP35	5826	chr19:47440665:+	VRK3	27849	chr19:50504111:-	ONLY_REF_SPLICE	YES	6	11	0.5	0.35	0.1151	0.023	{Klijn_CCL:Colo-Rectal=1},ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,VRK3->chr19:50479724-50529203:-,vaccinia_related_kinase_3	SW1463_LARGE_INTESTINE	0.35	0.5	0.1381	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	ATP5A1--SNTG1	4	0	ATP5A1	3379	chr18:43678138:-	SNTG1	27137	chr8:51306772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0921	0	ATP5A1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_alpha_subunit_1,_cardiac_muscle,chr18:43664110-43684300:-,SNTG1->chr8:50822349-51706678:+,syntrophin_gamma_1	SW1463_LARGE_INTESTINE	1	1	0.0921	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	BTG3--CXADR	4	0	BTG3	8732	chr21:18966052:-	CXADR	24967	chr21:18965856:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0921	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},LOCAL_INVERSION:-:+:[74],BTG3->BTG_family_member_3,chr21:18965971-18985265:-,CXADR->chr21:18884700-18965897:+,coxsackie_virus_and_adenovirus_receptor	SW1463_LARGE_INTESTINE	1	1	0.0921	TRUE	1	0	0	2	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	MAPKAPK3--SLC5A6	4	0	MAPKAPK3	13146	chr3:50686144:+	SLC5A6	28019	chr2:27422750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0921	0	MAPKAPK3->chr3:50648951-50686720:+,mitogen-activated_protein_kinase-activated_protein_kinase_3,SLC5A6->chr2:27422455-27435826:-,solute_carrier_family_5_member_6	SW1463_LARGE_INTESTINE	1	1	0.0921	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	TRABD--KDM2B	4	0	TRABD	1062	chr22:50624405:+	KDM2B	36576	chr12:121891147:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0921	0	TRABD->TraB_domain_containing,chr22:50624344-50638027:+,KDM2B->Oncogene{Bushman},chr12:121866900-122018920:-,lysine_demethylase_2B	SW1463_LARGE_INTESTINE	1	1	0.0921	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	ATP6C--SET	3	0	ATP6C	1218	chr16:2564183:+	SET	11413	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0691	0	ATP6C->chr16:2563966-2577956:+,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	DCTN5--RNF114	3	0	DCTN5	11441	chr16:23680111:+	RNF114	17795	chr20:48561895:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0	DCTN5->chr16:23652713-23681195:+,dynactin_subunit_5,RNF114->chr20:48552948-48570429:+,ring_finger_protein_114	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	EIF3E--SLC45A4	3	0	EIF3E	17093	chr8:109240496:-	SLC45A4	29280	chr8:142264728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0691	0	EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E,SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	FKBP4--FTL	3	0	FKBP4	5182	chr12:2908300:+	FTL	14012	chr19:49468667:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0	FKBP4->FK506_binding_protein_4,chr12:2904119-2914576:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	IRF6--RPL7P23p	3	0	IRF6	4241	chr1:209969758:-	RPL7P23p	16566	chr5:76878778:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0	IRF6->chr1:209959036-209979465:-,interferon_regulatory_factor_6,RPL7P23p->chr5:76878198-76879010:+	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	KCNAB2--ENOSF1	3	0	KCNAB2	2323	chr1:6052848:+	ENOSF1	37299	chr18:706578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0691	0	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	TAF1D--MKNK1	3	0	TAF1D	9121	chr11:93468042:-	MKNK1	21969	chr1:47051822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0	TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-,MKNK1->MAP_kinase_interacting_serine/threonine_kinase_1,chr1:47023090-47082515:-	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	UPF3A--CDC16	3	0	UPF3A	4015	chr13:115052104:+	CDC16	16795	chr13:115007596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0691	0	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	MCF2L--SH3TC1	2	1	MCF2L	2233	chr13:113556685:+	SH3TC1	84917	chr4:8235090:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0.023	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,SH3TC1->SH3_domain_and_tetratricopeptide_repeats_1,chr4:8183799-8243530:+	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	ARHGAP17--YLPM1	2	0	ARHGAP17	8058	chr16:24979982:-	YLPM1	59149	chr14:75301968:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	ARHGAP17->Rho_GTPase_activating_protein_17,chr16:24930706-25026987:-,YLPM1->YLP_motif_containing_1,chr14:75230069-75322244:+	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	ATP5A1--SNTG1	2	0	ATP5A1	3379	chr18:43678138:-	SNTG1	24746	chr8:51085121:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	ATP5A1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_alpha_subunit_1,_cardiac_muscle,chr18:43664110-43684300:-,SNTG1->chr8:50822349-51706678:+,syntrophin_gamma_1	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	CDC123--CDK2AP1	2	0	CDC123	1355	chr10:12238318:+	CDK2AP1	21192	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	CDC123->cell_division_cycle_123,chr10:12237964-12292588:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	CLSTN1--MSH3	2	0	CLSTN1	1884	chr1:9883701:-	MSH3	25527	chr5:79960962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	DNM1--ASUN	2	0	DNM1	3275	chr9:130981531:+	ASUN	36355	chr12:27070666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	DNM1->chr9:130965658-131017527:+,dynamin_1,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	EIF2AK2--SULT6B1	2	0	EIF2AK2	4529	chr2:37373996:-	SULT6B1	38020	chr2:37398733:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[10755],EIF2AK2->Oncogene{Bushman},chr2:37326353-37384208:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_2,SULT6B1->chr2:37394963-37423741:-,sulfotransferase_family_6B_member_1	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	2	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	FBXW8--ARHGEF10L	2	0	FBXW8	5917	chr12:117402659:+	ARHGEF10L	20809	chr1:17907048:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	FBXW8->F-box_and_WD_repeat_domain_containing_8,chr12:117348761-117468953:+,ARHGEF10L->Rho_guanine_nucleotide_exchange_factor_10_like,chr1:17866330-18024369:+	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	HNRNPA2B1--ST13	2	0	HNRNPA2B1	5215	chr7:26236935:-	ST13	24654	chr22:41226960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	LGALS3--TTC9C	2	0	LGALS3	2306	chr14:55596018:+	TTC9C	17047	chr11:62505760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	LGALS3->Oncogene{Bushman},chr14:55590828-55612126:+,lectin,_galactoside_binding_soluble_3,TTC9C->chr11:62495541-62507765:+,tetratricopeptide_repeat_domain_9C	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	MICALL2--RP11-566K11.7	2	0	MICALL2	1319	chr7:1498820:-	RP11-566K11.7	21635	chr16:89976999:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	MICALL2->MICAL_like_2,chr7:1468101-1499138:-,RP11-566K11.7->chr16:89972565-89984641:+	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	PSMA7--BRMS1	2	0	PSMA7	5740	chr20:60713227:-	BRMS1	12621	chr11:66108804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7,BRMS1->Oncogene{Bushman},breast_cancer_metastasis_suppressor_1,chr11:66104804-66112596:-	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	RBM14--ZC3H3	2	0	RBM14	1476	chr11:66384528:+	ZC3H3	17057	chr8:144590069:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+,ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	SNAPC4--IKBKAP	2	0	SNAPC4	1499	chr9:139292751:-	IKBKAP	41901	chr9:111661029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	SNAPC4->chr9:139270029-139293249:-,small_nuclear_RNA_activating_complex_polypeptide_4,IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--GLIS2	315	149	CBFA2T3	15652	chr16:88945678:-	GLIS2	27131	chr16:4384802:+	ONLY_REF_SPLICE	YES	109	0	0.81	1	4.3691	2.0666	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,GLIS2->GLIS_family_zinc_finger_2,chr16:4364762-4389598:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	6.4357	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANO7--DHDH	81	56	ANO7	20467	chr2:242157796:+	DHDH	27790	chr19:49438257:+	ONLY_REF_SPLICE	YES	4	5	0.97	0.96	1.1235	0.7767	ANO7->anoctamin_7,chr2:242127924-242164792:+,DHDH->chr19:49436939-49448226:+,dihydrodiol_dehydrogenase	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.97	1.9002	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MELK--RAPGEF4	15	5	MELK	4636	chr9:36589649:+	RAPGEF4	54949	chr2:173885346:+	ONLY_REF_SPLICE	YES	32	0	0.38	1	0.2081	0.0694	MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.2775	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANO7--DHDH	1	57	ANO7	21558	chr2:242162691:+	DHDH	27790	chr19:49438257:+	ONLY_REF_SPLICE	YES	2	5	0.97	0.92	0.0139	0.7906	ANO7->anoctamin_7,chr2:242127924-242164792:+,DHDH->chr19:49436939-49448226:+,dihydrodiol_dehydrogenase	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.97	0.8045	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANO7--DHDH	1	57	ANO7	22063	chr2:242163196:+	DHDH	27790	chr19:49438257:+	ONLY_REF_SPLICE	YES	2	5	0.97	0.92	0.0139	0.7906	ANO7->anoctamin_7,chr2:242127924-242164792:+,DHDH->chr19:49436939-49448226:+,dihydrodiol_dehydrogenase	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.97	0.8045	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAPGEF4--MELK	12	3	RAPGEF4	30956	chr2:173885443:+	MELK	49019	chr9:36597219:+	ONLY_REF_SPLICE	YES	0	40	1	0.27	0.1664	0.0416	RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+,MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.208	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MELK--RAPGEF4	11	5	MELK	5780	chr9:36594768:+	RAPGEF4	54949	chr2:173885346:+	ONLY_REF_SPLICE	YES	40	0	0.29	1	0.1526	0.0694	MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.222	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--GLIS2	2	34	CBFA2T3	15652	chr16:88945678:-	GLIS2	27390	chr16:4385061:+	ONLY_REF_SPLICE	YES	109	57	0.25	0.39	0.0277	0.4716	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,GLIS2->GLIS_family_zinc_finger_2,chr16:4364762-4389598:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.39	0.4993	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANO7--DHDH	3	0	ANO7	19977	chr2:242157306:+	DHDH	27790	chr19:49438257:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	ANO7->anoctamin_7,chr2:242127924-242164792:+,DHDH->chr19:49436939-49448226:+,dihydrodiol_dehydrogenase	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	3	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	TRUE	1	10	0	18	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PHF14	2	0	C17orf76-AS1	1593	chr17:16342728:+	PHF14	37718	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	C17orf76-AS1->chr17:16342136-16381992:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	TRUE	0	0	0	5	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR17HG--PANK2	2	0	MIR17HG	2669	chr13:92002480:+	PANK2	18090	chr20:3899318:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	MIR17HG->chr13:92000074-92006833:+,miR-17-92a-1_cluster_host_gene,PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SEPHS1	2	0	RCC1	2175	chr1:28834672:+	SEPHS1	21331	chr10:13387028:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SEPHS1->chr10:13359424-13390297:-,selenophosphate_synthetase_1	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TADA2A	2	0	RCC1	2175	chr1:28834672:+	TADA2A	20497	chr17:35771356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000602
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CASC11	21	20	PVT1	1202	chr8:128806980:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	92	0	0.31	1	0.2655	0.2529	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	0.5184	TRUE	0	5	0	3	5	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--IGH@	7	0	C17orf76-AS1	1593	chr17:16342728:+	IGH@	127577	chr14:106175001:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0885	0	C17orf76-AS1->chr17:16342136-16381992:+,IGH@->Oncogene{Bushman}	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0885	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV3-11	4	8	AC096579.7	4034	chr2:89156884:-	IGKV3-11	8780	chr2:89326873:-	INCL_NON_REF_SPLICE	YES	10243	6434	0	0	0.0506	0.1011	AC096579.7->chr2:89130700-89165653:-,IGKV3-11->chr2:89326668-89327228:-,immunoglobulin_kappa_variable_3-11	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1517	TRUE	0	8	1	1	4	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV3-11	3	11	AC096579.7	4016	chr2:89156902:-	IGKV3-11	8750	chr2:89326903:-	INCL_NON_REF_SPLICE	YES	10821	5147	0	0	0.0379	0.1391	AC096579.7->chr2:89130700-89165653:-,IGKV3-11->chr2:89326668-89327228:-,immunoglobulin_kappa_variable_3-11	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.177	TRUE	0	8	1	1	4	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXW7--CBLN4	5	1	FBXW7	2161	chr4:153456093:-	CBLN4	30026	chr20:54575903:-	ONLY_REF_SPLICE	YES	83	0	0.07	1	0.0632	0.0126	FBXW7->ArcherDX_panel,F-box_and_WD_repeat_domain_containing_7,FoundationOne_panel,Oncogene{Bushman},chr4:153242410-153457253:-,CBLN4->cerebellin_4_precursor,chr20:54572496-54580528:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--PTMA	5	0	AC096579.7	4062	chr2:89156856:-	PTMA	10062	chr2:232573242:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	AC096579.7->chr2:89130700-89165653:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0632	TRUE	0	0	0	3	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNAS	4	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0506	TRUE	0	3	0	13	2	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCAT1	3	0	PVT1	1202	chr8:128806980:+	CCAT1	29731	chr8:128221962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding)	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--NANS	3	0	TXNDC5	2258	chr6:7910837:-	NANS	18239	chr9:100819073:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,NANS->N-acetylneuraminate_synthase,chr9:100819021-100845357:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP13A3--WWP1	2	0	ATP13A3	22354	chr3:194157824:-	WWP1	49385	chr8:87414248:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,WWP1->Oncogene{Bushman},WW_domain_containing_E3_ubiquitin_protein_ligase_1,chr8:87354967-87490649:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AURKB--USP28	2	0	AURKB	1424	chr17:8113495:-	USP28	18380	chr11:113702715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	AURKB->ArcherDX_panel,FoundationOne_panel,aurora_kinase_B,chr17:8108056-8113918:-,USP28->chr11:113668596-113746292:-,ubiquitin_specific_peptidase_28	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC14--GTPBP10	2	0	CCDC14	1574	chr3:123679991:-	GTPBP10	36514	chr7:90001469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--FAM120AOS	2	0	CHD2	6529	chr15:93444529:+	FAM120AOS	62843	chr9:96212881:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:1/3694=0.03%,CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,FAM120AOS->chr9:96208776-96215874:-,family_with_sequence_similarity_120A_opposite_strand	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	2	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1984--SF1	2	0	KIAA1984	4889	chr9:139697238:+	SF1	23443	chr11:64532990:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	KIAA1984->chr9:139690802-139702193:+,SF1->chr11:64532078-64546258:-,splicing_factor_1	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--AC159540.1	2	0	RCC1	2175	chr1:28834672:+	AC159540.1	24725	chr2:98089511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,AC159540.1->chr2:98081083-98099107:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	2	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNAS	2	0	RCC1	2175	chr1:28834672:+	GNAS	40308	chr20:57478586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	1	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TAF1D	2	0	RCC1	2175	chr1:28834672:+	TAF1D	27214	chr11:93467826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	1	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL15--IGJ	2	0	RPL15	1695	chr3:23958730:+	IGJ	12650	chr4:71532231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15,IGJ->chr4:71521258-71547534:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000512
OVCAR4_OVARY	GCSH--PKD1L2	609	296	GCSH	4976	chr16:81118068:-	PKD1L2	65977	chr16:81134889:-	ONLY_REF_SPLICE	YES	177	2	0.84	1	7.3743	3.5842	LOCAL_REARRANGEMENT:-:[4472],GCSH->chr16:81115566-81130008:-,glycine_cleavage_system_protein_H,PKD1L2->chr16:81134480-81253975:-,polycystin_1_like_2_(gene/pseudogene)	OVCAR4_OVARY	0.84	1	10.9585	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	LSR--SCN1B	257	137	LSR	3330	chr19:35741562:+	SCN1B	14037	chr19:35523432:+	ONLY_REF_SPLICE	YES	285	0	0.58	1	3.112	1.6589	HGNC_GENEFAM,{Klijn_CCL:Ovary=1},LSR->chr19:35739233-35758867:+,lipolysis_stimulated_lipoprotein_receptor,SCN1B->chr19:35521588-35531352:+,sodium_voltage-gated_channel_beta_subunit_1	OVCAR4_OVARY	0.58	1	4.7709	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	CTD-2544L4.1--TBC1D7	123	35	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5189	chr6:13328738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4894	0.4238	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	OVCAR4_OVARY	1	1	1.9132	TRUE	0	0	0	5	0	TRUE	ACH-000617
OVCAR4_OVARY	CTD-2544L4.1--TBC1D7	102	38	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5177	chr6:13328750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2351	0.4601	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	OVCAR4_OVARY	1	1	1.6952	TRUE	0	0	0	5	0	TRUE	ACH-000617
OVCAR4_OVARY	CTD-2544L4.1--TBC1D7	96	38	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5183	chr6:13328744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1624	0.4601	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	OVCAR4_OVARY	1	1	1.6225	TRUE	0	0	0	5	0	TRUE	ACH-000617
OVCAR4_OVARY	GCSH--PKD1L2	5	300	GCSH	5123	chr16:81117921:-	PKD1L2	65960	chr16:81134906:-	INCL_NON_REF_SPLICE	YES	179	2	0.63	0.99	0.0605	3.6326	LOCAL_REARRANGEMENT:-:[4472],GCSH->chr16:81115566-81130008:-,glycine_cleavage_system_protein_H,PKD1L2->chr16:81134480-81253975:-,polycystin_1_like_2_(gene/pseudogene)	OVCAR4_OVARY	0.63	0.99	3.6931	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	ANXA9--NUP210L	38	21	ANXA9	6456	chr1:150960817:+	NUP210L	45292	chr1:153984846:-	ONLY_REF_SPLICE	YES	46	0	0.56	1	0.4601	0.2543	{Klijn_CCL:Ovary=1},ANXA9->annexin_A9,chr1:150954493-150968110:+,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	OVCAR4_OVARY	0.56	1	0.7144	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	DLG1--PCYT1A	33	24	DLG1	5122	chr3:197009550:-	PCYT1A	49767	chr3:195975194:-	ONLY_REF_SPLICE	YES	48	45	0.54	0.56	0.3996	0.2906	DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component,PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha	OVCAR4_OVARY	0.54	0.56	0.6902	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	RP11-973F15.1--RP11-94A24.1	18	9	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.218	0.109	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	OVCAR4_OVARY	1	1	0.327	TRUE	0	2	0	7	2	TRUE	ACH-000617
OVCAR4_OVARY	RFX3--GLIS3	13	4	RFX3	1258	chr9:3525747:-	GLIS3	57151	chr9:3932470:-	ONLY_REF_SPLICE	YES	6	14	0.74	0.55	0.1574	0.0484	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-	OVCAR4_OVARY	0.55	0.74	0.2058	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	EHBP1L1--RP11-321G12.1	11	4	EHBP1L1	1369	chr11:65343877:+	RP11-321G12.1	21794	chr15:63724351:+	ONLY_REF_SPLICE	YES	15	0	0.5	1	0.1332	0.0484	EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+,RP11-321G12.1->chr15:63682335-63729347:+	OVCAR4_OVARY	0.5	1	0.1816	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	C11orf73--RP11-320L11.2	11	3	C11orf73	1268	chr11:86013520:+	RP11-320L11.2	12388	chr11:85995062:+	INCL_NON_REF_SPLICE	YES	324	0	0.04	1	0.1332	0.0363	LOCAL_REARRANGEMENT:+:[17543],C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,RP11-320L11.2->chr11:85994969-85995710:+	OVCAR4_OVARY	0.04	1	0.1695	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	WDSUB1--BAZ2B	10	6	WDSUB1	9676	chr2:160112707:-	BAZ2B	64534	chr2:160194283:-	ONLY_REF_SPLICE	YES	32	18	0.33	0.47	0.1211	0.0727	LOCAL_REARRANGEMENT:-:[32180],WDSUB1->WD_repeat,_sterile_alpha_motif_and_U-box_domain_containing_1,chr2:160092304-160143310:-,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	OVCAR4_OVARY	0.33	0.47	0.1938	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	EHBP1L1--RP11-321G12.1	5	7	EHBP1L1	1369	chr11:65343877:+	RP11-321G12.1	20699	chr15:63723256:+	ONLY_REF_SPLICE	YES	15	0	0.44	1	0.0605	0.0848	EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+,RP11-321G12.1->chr15:63682335-63729347:+	OVCAR4_OVARY	0.44	1	0.1453	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	PDP1--RP11-486O13.2	6	1	PDP1	2613	chr8:94929307:+	RP11-486O13.2	18008	chr14:70694289:+	ONLY_REF_SPLICE	YES	25	3	0.22	0.7	0.0727	0.0121	PDP1->chr8:94870035-94938294:+,pyruvate_dehyrogenase_phosphatase_catalytic_subunit_1,RP11-486O13.2->chr14:70653840-70696904:+	OVCAR4_OVARY	0.22	0.7	0.0848	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	EHBP1L1--RP11-321G12.1	4	7	EHBP1L1	1369	chr11:65343877:+	RP11-321G12.1	20770	chr15:63723327:+	INCL_NON_REF_SPLICE	YES	15	1	0.42	0.92	0.0484	0.0848	EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+,RP11-321G12.1->chr15:63682335-63729347:+	OVCAR4_OVARY	0.42	0.92	0.1332	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	EHBP1L1--RP11-321G12.1	4	6	EHBP1L1	1369	chr11:65343877:+	RP11-321G12.1	20922	chr15:63723479:+	INCL_NON_REF_SPLICE	YES	15	2	0.4	0.83	0.0484	0.0727	EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+,RP11-321G12.1->chr15:63682335-63729347:+	OVCAR4_OVARY	0.4	0.83	0.1211	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	KANSL1--ARL17B	4	1	KANSL1	2697	chr17:44301037:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	10	3	0.33	0.62	0.0484	0.0121	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OVCAR4_OVARY	0.33	0.62	0.0605	TRUE	0	1	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	USP54--SCUBE3	4	0	USP54	1017	chr10:75385695:-	SCUBE3	40745	chr6:35195357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0484	0	USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,SCUBE3->chr6:35182190-35220856:+,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_3	OVCAR4_OVARY	1	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	EHBP1L1--RP11-321G12.1	2	7	EHBP1L1	1369	chr11:65343877:+	RP11-321G12.1	20847	chr15:63723404:+	ONLY_REF_SPLICE	YES	15	1	0.38	0.9	0.0242	0.0848	EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+,RP11-321G12.1->chr15:63682335-63729347:+	OVCAR4_OVARY	0.38	0.9	0.109	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	ALDOA--KRT17	3	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	OVCAR4_OVARY	1	1	0.0363	TRUE	0	0	0	10	0	TRUE	ACH-000617
OVCAR4_OVARY	CTA-292E10.6--ZC3H7B	2	2	CTA-292E10.6	4685	chr22:29218167:+	ZC3H7B	33125	chr22:41751473:+	ONLY_REF_SPLICE	YES	0	89	1	0.04	0.0242	0.0242	CTA-292E10.6->chr22:29196671-29244547:+,ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B	OVCAR4_OVARY	0.04	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	RP11-973F15.1--RP11-94A24.1	1	5	RP11-973F15.1	2854	chr8:123683508:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	18	0	0.25	1	0.0121	0.0605	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	OVCAR4_OVARY	0.25	1	0.0726	TRUE	0	2	0	7	2	TRUE	ACH-000617
OVCAR4_OVARY	EIF4A3--PGLS	2	0	EIF4A3	3531	chr17:78115581:-	PGLS	16147	chr19:17626982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	EIF4A3->chr17:78109013-78120982:-,eukaryotic_translation_initiation_factor_4A3,PGLS->6-phosphogluconolactonase,chr19:17622438-17632097:+	OVCAR4_OVARY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	FYN--FDPS	2	0	FYN	30940	chr6:111995702:-	FDPS	42692	chr1:155289402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-,FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase	OVCAR4_OVARY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	KMT2E--PIK3CG	2	0	KMT2E	25698	chr7:104749675:+	PIK3CG	38287	chr7:106512982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,PIK3CG->ArcherDX_panel,FoundationOne_panel,chr7:106505723-106547590:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_gamma	OVCAR4_OVARY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	RFX3--GLIS3	1	4	RFX3	1258	chr9:3525747:-	GLIS3	56703	chr9:3932918:-	ONLY_REF_SPLICE	YES	6	15	0.45	0.25	0.0121	0.0484	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-	OVCAR4_OVARY	0.25	0.45	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	UBE2D2--EEF1D	2	0	UBE2D2	1182	chr5:138906197:+	EEF1D	23969	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	OVCAR4_OVARY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	UBE2H--ZC3HC1	2	0	UBE2H	2497	chr7:129591118:-	ZC3HC1	32126	chr7:129663563:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_REARRANGEMENT:-:[65337],UBE2H->chr7:129470572-129592789:-,ubiquitin_conjugating_enzyme_E2_H,ZC3HC1->chr7:129658126-129691291:-,zinc_finger_C3HC-type_containing_1	OVCAR4_OVARY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	RP11-410L14.2--DOCK3	1	3	RP11-410L14.2	1176	chr8:100025097:-	DOCK3	6441	chr3:50816106:+	ONLY_REF_SPLICE	NO	12	0	0.25	1	0.0121	0.0363	RP11-410L14.2->chr8:100008991-100025272:-,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	OVCAR4_OVARY	0.25	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	RP11-973F15.1--RP11-94A24.1	1	3	RP11-973F15.1	1226	chr8:123706120:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	NO	41	0	0.09	1	0.0121	0.0363	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	OVCAR4_OVARY	0.09	1	0.0484	TRUE	0	2	0	5	1	TRUE	ACH-000617
OVCAR4_OVARY	KMT2E--PIK3CG	1	2	KMT2E	25698	chr7:104749675:+	PIK3CG	35280	chr7:106507995:+	ONLY_REF_SPLICE	YES	78	0	0.04	1	0.0121	0.0242	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,PIK3CG->ArcherDX_panel,FoundationOne_panel,chr7:106505723-106547590:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_gamma	OVCAR4_OVARY	0.04	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	PDP1--RP11-486O13.2	1	1	PDP1	3479	chr8:94930173:+	RP11-486O13.2	18008	chr14:70694289:+	ONLY_REF_SPLICE	NO	36	3	0.05	0.4	0.0121	0.0121	PDP1->chr8:94870035-94938294:+,pyruvate_dehyrogenase_phosphatase_catalytic_subunit_1,RP11-486O13.2->chr14:70653840-70696904:+	OVCAR4_OVARY	0.05	0.4	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	SMAD7--FAM53C	1	1	SMAD7	4655	chr18:46468851:-	FAM53C	14145	chr5:137669122:+	ONLY_REF_SPLICE	YES	21	0	0.09	1	0.0121	0.0121	SMAD7->SMAD_family_member_7,chr18:46446223-46477081:-,FAM53C->chr5:137667624-137685416:+,family_with_sequence_similarity_53_member_C	OVCAR4_OVARY	0.09	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
YD38_UPPER_AERODIGESTIVE_TRACT	PTBP3--RP11-307E17.8	6	2	PTBP3	5173	chr9:115038124:-	RP11-307E17.8	26060	chr9:97101118:+	ONLY_REF_SPLICE	YES	6	0	0.57	1	0.1254	0.0418	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,RP11-307E17.8->chr9:97094758-97123230:+	YD38_UPPER_AERODIGESTIVE_TRACT	0.57	1	0.1672	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	SNX32--EXOC4	5	0	SNX32	8948	chr11:65623694:+	EXOC4	43440	chr7:133682261:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1045	0	SNX32->chr11:65601112-65624367:+,sorting_nexin_32,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.1045	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	ASF1B--NDE1	3	0	ASF1B	4858	chr19:14231388:-	NDE1	19840	chr16:15785041:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	ASF1B->anti-silencing_function_1B_histone_chaperone,chr19:14230321-14247768:-,NDE1->chr16:15737124-15820210:+,nudE_neurodevelopment_protein_1	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	PDLIM5--EIF4E	3	0	PDLIM5	2250	chr4:95376535:+	EIF4E	42402	chr4:99823133:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0627	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	1	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	PRKCSH--IKBKGP1	3	0	PRKCSH	12564	chr19:11561663:+	IKBKGP1	21746	chrX:153868424:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	PRKCSH->chr19:11546109-11561783:+,protein_kinase_C_substrate_80K-H,IKBKGP1->chrX:153868251-153876549:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma_pseudogene_1	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	RCC1--RPL19	3	0	RCC1	2175	chr1:28834672:+	RPL19	19808	chr17:37357466:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0627	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RPL19->chr17:37356536-37360980:+,ribosomal_protein_L19	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	RP5-901A4.1--NDUFS8	3	0	RP5-901A4.1	2178	chr11:67796751:-	NDUFS8	12339	chr11:67803720:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0627	0	LOCAL_INVERSION:-:+:[156],RP5-901A4.1->chr11:67792277-67797928:-,NDUFS8->NADH:ubiquinone_oxidoreductase_core_subunit_S8,chr11:67798084-67804111:+	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	SLC1A5--H6PD	3	0	SLC1A5	6557	chr19:47281941:-	H6PD	19800	chr1:9324013:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,H6PD->chr1:9294834-9331396:+,hexose-6-phosphate_dehydrogenase/glucose_1-dehydrogenase	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	SLC3A2--PLEC	3	0	SLC3A2	6112	chr11:62648648:+	PLEC	52044	chr8:144989861:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,PLEC->chr8:144989321-145050902:-,plectin	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	WDR3--ARID2	3	0	WDR3	2307	chr1:118476012:+	ARID2	39348	chr12:46215209:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	WDR3->WD_repeat_domain_3,chr1:118472343-118509165:+,ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	PDS5A--UBE2K	2	1	PDS5A	2517	chr4:39978060:-	UBE2K	50009	chr4:39776454:+	ONLY_REF_SPLICE	YES	5	15	0.38	0.17	0.0418	0.0209	LOCAL_INVERSION:-:+:[40071],PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-,UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K	YD38_UPPER_AERODIGESTIVE_TRACT	0.17	0.38	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	ALG14--ABCD3	2	0	ALG14	2335	chr1:95530422:-	ABCD3	37720	chr1:94964158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-,ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	1	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	B3GNTL1--DDX17	2	0	B3GNTL1	2770	chr17:81006347:-	DDX17	27967	chr22:38897285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	ENO1--ILF2	2	0	ENO1	7885	chr1:8927176:-	ILF2	18584	chr1:153641033:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,ILF2->chr1:153634512-153643524:-,interleukin_enhancer_binding_factor_2	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	HIAT1--XPO4	2	0	HIAT1	1220	chr1:100503872:+	XPO4	18600	chr13:21442840:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	HIAT1->chr1:100503653-100548933:+,XPO4->chr13:21351469-21477187:-,exportin_4	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	HMGA2--OVOL2	2	0	HMGA2	3338	chr12:66221867:+	OVOL2	35947	chr20:17937681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	IL6R--TNFRSF21	2	0	IL6R	5533	chr1:154407632:+	TNFRSF21	25348	chr6:47202634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	HGNC_GENEFAM,IL6R->chr1:154377669-154441926:+,interleukin_6_receptor,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	MCRS1--NEDD4L	2	0	MCRS1	2432	chr12:49960505:-	NEDD4L	47617	chr18:56024426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	MCRS1->chr12:49950327-49961936:-,microspherule_protein_1,NEDD4L->chr18:55711599-56068772:+,neural_precursor_cell_expressed,_developmentally_down-regulated_4-like,_E3_ubiquitin_protein_ligase	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	PRPF4B--TPM4	2	0	PRPF4B	10771	chr6:4049340:+	TPM4	30309	chr19:16191725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	PRPF4B->Oncogene{Bushman},chr6:4021501-4065217:+,pre-mRNA_processing_factor_4B,TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	PTK2--HNRNPH1	2	0	PTK2	2092	chr8:142011224:-	HNRNPH1	70473	chr5:179048398:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	RANGAP1--DSP	2	0	RANGAP1	11873	chr22:41653952:-	DSP	29621	chr6:7563969:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-,DSP->chr6:7541808-7586950:+,desmoplakin	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	RCC1--SRP54	2	0	RCC1	2175	chr1:28834672:+	SRP54	33052	chr14:35487898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	SMDT1--TCF20	2	0	SMDT1	1264	chr22:42475958:+	TCF20	8864	chr22:42611347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	LOCAL_INVERSION:+:-:[75731],SMDT1->chr22:42475695-42480288:+,single-pass_membrane_protein_with_aspartate-rich_tail_1,TCF20->chr22:42556019-42739622:-,transcription_factor_20_(AR1)	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	TOR1AIP2--CLTB	2	0	TOR1AIP2	9126	chr1:179834571:-	CLTB	31295	chr5:175837304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	TOR1AIP2->chr1:179809102-179846938:-,torsin_1A_interacting_protein_2,CLTB->chr5:175819456-175843570:-,clathrin_light_chain_B	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
MORCPR_LUNG	ARHGEF10--CENPF	24	13	ARHGEF10	3311	chr8:1791602:+	CENPF	69819	chr1:214830296:+	INCL_NON_REF_SPLICE	YES	19	512	0.66	0.07	0.3077	0.1667	ARHGEF10->Rho_guanine_nucleotide_exchange_factor_10,chr8:1772142-1906807:+,CENPF->Oncogene{Bushman},centromere_protein_F,chr1:214776538-214837931:+	MORCPR_LUNG	0.07	0.66	0.4744	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	CAPZB--UBR4	9	0	CAPZB	1137	chr1:19811930:-	UBR4	76672	chr1:19446842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1154	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4	MORCPR_LUNG	1	1	0.1154	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	ATG7--LPIN1	4	1	ATG7	26330	chr3:11406208:+	LPIN1	40281	chr2:11853882:+	ONLY_REF_SPLICE	YES	18	0	0.22	1	0.0513	0.0128	ATG7->autophagy_related_7,chr3:11313995-11599139:+,LPIN1->chr2:11817721-11967535:+,lipin_1	MORCPR_LUNG	0.22	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	SIK2--RPLP1	4	0	SIK2	15849	chr11:111594434:+	RPLP1	26027	chr15:69745157:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	MORCPR_LUNG	1	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	PARP1--KRT7	3	0	PARP1	18048	chr1:226555900:-	KRT7	33080	chr12:52632503:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	PARP1->chr1:226548392-226595780:-,poly(ADP-ribose)_polymerase_1,KRT7->chr12:52626304-52645970:+,keratin_7	MORCPR_LUNG	1	1	0.0385	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	ADAM9--MARK3	2	0	ADAM9	14387	chr8:38899636:+	MARK3	53055	chr14:103958114:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	MORCPR_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	AKAP13--APP	2	0	AKAP13	1228	chr15:85924029:+	APP	75385	chr21:27394358:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	MORCPR_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	ATP11A--TUBGCP3	2	0	ATP11A	1127	chr13:113344769:+	TUBGCP3	64507	chr13:113173357:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,TUBGCP3->chr13:113139325-113242481:-,tubulin_gamma_complex_associated_protein_3	MORCPR_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	RPRD1A--MOCOS	2	0	RPRD1A	1323	chr18:33647217:-	MOCOS	33365	chr18:33828885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	MORCPR_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	SETD5--BPHL	2	0	SETD5	24283	chr3:9506356:+	BPHL	46516	chr6:3140620:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	SETD5->SET_domain_containing_5,chr3:9439299-9520924:+,BPHL->biphenyl_hydrolase-like_(serine_hydrolase),chr6:3118608-3153812:+	MORCPR_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	SPEN--EZH2	2	0	SPEN	2608	chr1:16199631:+	EZH2	43252	chr7:148512638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	MORCPR_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000851
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLAA--MIR31HG	259	87	PLAA	9051	chr9:26919308:-	MIR31HG	23008	chr9:21455943:-	ONLY_REF_SPLICE	YES	22	0	0.94	1	2.6445	0.8883	PLAA->chr9:26904081-26947461:-,phospholipase_A2_activating_protein,MIR31HG->MIR31_host_gene,chr9:21455641-21559668:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	3.5328	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RARA--PML	173	36	RARA	6149	chr17:38487648:+	PML	31651	chr15:74326819:+	ONLY_REF_SPLICE	YES	17	65	0.92	0.76	1.7664	0.3676	YOSHIHARA_TCGA_num_samples[LAML:10],chimerdb_omim:{acutepromyelocyticleukemia},chimerdb_omim:{promyelocyticleukemia},chimerdb_pubmed{acute promyelocytic leukemia (APL),Acute promyelocytic leukemia,acute promyelocytic leukemia},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.92	2.134	TRUE	0	5	0	1	4	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	121	121	PVT1	1202	chr8:128806980:+	CCDC26	28642	chr8:130692295:-	INCL_NON_REF_SPLICE	YES	110	0	0.69	1	1.2355	1.2355	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	2.471	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	85	52	PVT1	1202	chr8:128806980:+	CCDC26	31947	chr8:130411930:-	ONLY_REF_SPLICE	YES	110	7	0.55	0.95	0.8679	0.531	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.95	1.3989	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PML--RARA	51	23	PML	10929	chr15:74325755:+	RARA	33681	chr17:38504568:+	ONLY_REF_SPLICE	YES	64	18	0.54	0.8	0.5207	0.2348	Mitelman{Heart=2,AL_bi=2,Skin=2,AML=8},YOSHIHARA_TCGA_num_samples[LAML:15],chimerdb_omim:{acutepromyelocyticleukemia},chimerdb_pubmed{Acute leukemia,acute promyelocytic leukemia(APL),promyelocytic leukaemia,Acute promyelocytic leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL), acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute eosinophilic granulocytic leukemia,promyelocytic leukemia,myelodysplastic syndromes (MDS),chronic myeloid leukemia, acute lymphoblastic leukemia,Acute promyelocytic leukemia (APML),childhood acute myeloid leukemia (AML),APL,acute promyelocytic leukemia(APL),  acute myeloid leukemia (AML),acute myelogenous leukemia(AML),acute promyelocytic leukemia,Acute promyelocytic leukemia(APL)like disease,Extramedullary disease (EMD), acute promyelocytic leukemia (APL),Acute Promyelocytic Leukemia(APL),acute promyelocytic leukemia (PML),Acute promyelocytic leukemia (APL) ,acute promyelocytic leukemia (APL) ,acute myeloid leukemia(AML),chromosomal anomalies (most commonly translocations) in lymphoma and leukemia,acute myeloid leukemia, chronic myelogenous leukemia,human malignancies,Acute promyelocytic leukaemia (APL), minimal residual disease (MRD), acute myeloid leukaemia (AML),Acute promyelocytic leukemia (APL),chronic myeloid leukemia (CML), acute myeloid leukemia (AML),Acute promyelocytic leukaemia (APL),acute promyelocytic leukaemia,acute myeloid leukemia (AML), acute myelogenous leukemia,acute promyelocytic leukaemia (APL),acute promyelocytic leukemias (APLM3 eight hypergranular, four microgranular),Thyroid carcinoma, myeloid leukemia,severalleukaemia,promyelocytic leukemia (APL),Acute promyelocytic leukaemia, sensitive to treatment with all transretinoic acid, good prognosis,leukemia,acute promyelocytic leukemias,childhood acute lymphoblastic leukemia},PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia,RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.8	0.7555	TRUE	0	7	0	1	7	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	8	126	PVT1	2457	chr8:128808254:+	CCDC26	28642	chr8:130692295:-	INCL_NON_REF_SPLICE	YES	108	0	0.55	1	0.0817	1.2865	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	1.3682	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	22	21	PVT1	1202	chr8:128806980:+	CCDC26	34197	chr8:130365226:-	ONLY_REF_SPLICE	YES	110	14	0.28	0.75	0.2246	0.2144	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.75	0.439	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLAA--MIR31HG	3	87	PLAA	9051	chr9:26919308:-	MIR31HG	23012	chr9:21455939:-	INCL_NON_REF_SPLICE	YES	22	0	0.8	1	0.0306	0.8883	PLAA->chr9:26904081-26947461:-,phospholipase_A2_activating_protein,MIR31HG->MIR31_host_gene,chr9:21455641-21559668:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.9189	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAGH--PCNT	22	7	HAGH	11804	chr16:1859239:-	PCNT	67532	chr21:47865197:+	ONLY_REF_SPLICE	YES	10	42	0.74	0.41	0.2246	0.0715	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,PCNT->chr21:47744036-47865682:+,pericentrin	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.74	0.2961	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLAA--MIR31HG	2	87	PLAA	11947	chr9:26913877:-	MIR31HG	23008	chr9:21455943:-	ONLY_REF_SPLICE	NO	23	0	0.79	1	0.0204	0.8883	PLAA->chr9:26904081-26947461:-,phospholipase_A2_activating_protein,MIR31HG->MIR31_host_gene,chr9:21455641-21559668:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.9087	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	8	55	PVT1	2457	chr8:128808254:+	CCDC26	31947	chr8:130411930:-	ONLY_REF_SPLICE	YES	108	7	0.37	0.9	0.0817	0.5616	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.9	0.6433	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX8--IDI2	18	6	STX8	8513	chr17:9448489:-	IDI2	20050	chr10:1071832:-	INCL_NON_REF_SPLICE	YES	68	0	0.26	1	0.1838	0.0613	STX8->chr17:9153788-9479908:-,syntaxin_8,IDI2->chr10:1064847-1071799:-,isopentenyl-diphosphate_delta_isomerase_2	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.2451	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	4	56	PVT1	2520	chr8:128808317:+	CCDC26	31947	chr8:130411930:-	ONLY_REF_SPLICE	YES	106	7	0.36	0.9	0.0408	0.5718	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.9	0.6126	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	4	54	PVT1	1202	chr8:128806980:+	CCDC26	30899	chr8:130492936:-	ONLY_REF_SPLICE	YES	110	7	0.35	0.89	0.0408	0.5514	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.89	0.5922	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	2	57	PVT1	2457	chr8:128808254:+	CCDC26	30899	chr8:130492936:-	ONLY_REF_SPLICE	YES	108	7	0.35	0.89	0.0204	0.582	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.89	0.6024	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNM2--RP11-393J16.4	13	9	DNM2	1325	chr19:10829079:+	RP11-393J16.4	42027	chr10:38269217:+	ONLY_REF_SPLICE	YES	101	0	0.18	1	0.1327	0.0919	DNM2->chr19:10828755-10944164:+,dynamin_2,RP11-393J16.4->chr10:38265753-38281395:+	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPFIBP1--CCDC91	13	8	PPFIBP1	4200	chr12:27731172:+	CCDC91	64172	chr12:28603094:+	ONLY_REF_SPLICE	YES	4	59	0.84	0.26	0.1327	0.0817	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.84	0.2144	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAGH--PCNT	11	12	HAGH	11804	chr16:1859239:-	PCNT	66942	chr21:47864607:+	ONLY_REF_SPLICE	YES	10	31	0.7	0.43	0.1123	0.1225	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,PCNT->chr21:47744036-47865682:+,pericentrin	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.7	0.2348	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	5	21	PVT1	1202	chr8:128806980:+	CCDC26	34192	chr8:130365231:-	INCL_NON_REF_SPLICE	YES	110	14	0.19	0.65	0.0511	0.2144	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.65	0.2655	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	3	21	PVT1	2520	chr8:128808317:+	CCDC26	34197	chr8:130365226:-	ONLY_REF_SPLICE	YES	106	14	0.18	0.63	0.0306	0.2144	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.63	0.245	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PML--RARA	2	23	PML	10937	chr15:74325763:+	RARA	33681	chr17:38504568:+	ONLY_REF_SPLICE	YES	70	18	0.26	0.58	0.0204	0.2348	Mitelman{Heart=2,AL_bi=2,Skin=2,AML=8},YOSHIHARA_TCGA_num_samples[LAML:15],chimerdb_omim:{acutepromyelocyticleukemia},chimerdb_pubmed{Acute leukemia,acute promyelocytic leukemia(APL),promyelocytic leukaemia,Acute promyelocytic leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL), acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute eosinophilic granulocytic leukemia,promyelocytic leukemia,myelodysplastic syndromes (MDS),chronic myeloid leukemia, acute lymphoblastic leukemia,Acute promyelocytic leukemia (APML),childhood acute myeloid leukemia (AML),APL,acute promyelocytic leukemia(APL),  acute myeloid leukemia (AML),acute myelogenous leukemia(AML),acute promyelocytic leukemia,Acute promyelocytic leukemia(APL)like disease,Extramedullary disease (EMD), acute promyelocytic leukemia (APL),Acute Promyelocytic Leukemia(APL),acute promyelocytic leukemia (PML),Acute promyelocytic leukemia (APL) ,acute promyelocytic leukemia (APL) ,acute myeloid leukemia(AML),chromosomal anomalies (most commonly translocations) in lymphoma and leukemia,acute myeloid leukemia, chronic myelogenous leukemia,human malignancies,Acute promyelocytic leukaemia (APL), minimal residual disease (MRD), acute myeloid leukaemia (AML),Acute promyelocytic leukemia (APL),chronic myeloid leukemia (CML), acute myeloid leukemia (AML),Acute promyelocytic leukaemia (APL),acute promyelocytic leukaemia,acute myeloid leukemia (AML), acute myelogenous leukemia,acute promyelocytic leukaemia (APL),acute promyelocytic leukemias (APLM3 eight hypergranular, four microgranular),Thyroid carcinoma, myeloid leukemia,severalleukaemia,promyelocytic leukemia (APL),Acute promyelocytic leukaemia, sensitive to treatment with all transretinoic acid, good prognosis,leukemia,acute promyelocytic leukemias,childhood acute lymphoblastic leukemia},PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia,RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.58	0.2552	TRUE	0	7	0	1	7	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP5D1--AEBP2	6	1	PPP5D1	1318	chr19:47104140:-	AEBP2	22562	chr12:19665332:+	ONLY_REF_SPLICE	YES	3	162	0.7	0.04	0.0613	0.0102	PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-,AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.7	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	1	21	PVT1	2457	chr8:128808254:+	CCDC26	34197	chr8:130365226:-	ONLY_REF_SPLICE	NO	108	14	0.17	0.61	0.0102	0.2144	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.61	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAGH--PCNT	3	5	HAGH	11288	chr16:1859755:-	PCNT	66942	chr21:47864607:+	ONLY_REF_SPLICE	YES	25	31	0.24	0.21	0.0306	0.0511	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,PCNT->chr21:47744036-47865682:+,pericentrin	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.24	0.0817	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RARA--PML	4	0	RARA	2263	chr17:38474700:+	PML	31651	chr15:74326819:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	YOSHIHARA_TCGA_num_samples[LAML:10],chimerdb_omim:{acutepromyelocyticleukemia},chimerdb_omim:{promyelocyticleukemia},chimerdb_pubmed{acute promyelocytic leukemia (APL),Acute promyelocytic leukemia,acute promyelocytic leukemia},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX8--IDI2	4	0	STX8	8513	chr17:9448489:-	IDI2	22290	chr10:1068715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	STX8->chr17:9153788-9479908:-,syntaxin_8,IDI2->chr10:1064847-1071799:-,isopentenyl-diphosphate_delta_isomerase_2	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAGH--PCNT	2	6	HAGH	11288	chr16:1859755:-	PCNT	66058	chr21:47863723:+	ONLY_REF_SPLICE	YES	25	23	0.24	0.26	0.0204	0.0613	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,PCNT->chr21:47744036-47865682:+,pericentrin	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.26	0.0817	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GATAD2A--CTC-575C13.2	3	1	GATAD2A	1313	chr19:19496947:+	CTC-575C13.2	26371	chr19:20434858:-	INCL_NON_REF_SPLICE	YES	19	1	0.17	0.8	0.0306	0.0102	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,CTC-575C13.2->chr19:20434801-20435377:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.8	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAGH--PCNT	2	3	HAGH	8093	chr16:1866894:-	PCNT	67532	chr21:47865197:+	ONLY_REF_SPLICE	YES	34	42	0.13	0.11	0.0204	0.0306	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,PCNT->chr21:47744036-47865682:+,pericentrin	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.13	0.051	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUGP1--ZNF257	2	1	SUGP1	10005	chr19:19407798:-	ZNF257	23040	chr19:22255611:+	ONLY_REF_SPLICE	YES	76	7	0.04	0.3	0.0204	0.0102	SUGP1->SURP_and_G-patch_domain_containing_1,chr19:19386827-19431653:-,ZNF257->chr19:22235254-22274282:+,zinc_finger_protein_257	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.3	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPZA1--ZNF131	2	0	CAPZA1	1711	chr1:113162505:+	ZNF131	26416	chr5:43122141:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CAPZA1->capping_actin_protein_of_muscle_Z-line_alpha_subunit_1,chr1:113161795-113214241:+,ZNF131->chr5:43065278-43192123:+,zinc_finger_protein_131	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ESYT1--PHB2	2	0	ESYT1	7025	chr12:56526585:+	PHB2	19558	chr12:7078740:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ESYT1->chr12:56512034-56538455:+,extended_synaptotagmin_protein_1,PHB2->chr12:7074490-7079988:-,prohibitin_2	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAGH--PCNT	1	3	HAGH	11288	chr16:1859755:-	PCNT	67532	chr21:47865197:+	ONLY_REF_SPLICE	YES	25	42	0.14	0.09	0.0102	0.0306	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,PCNT->chr21:47744036-47865682:+,pericentrin	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.14	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCNT2--SCAPER	1	1	CCNT2	6381	chr2:135700244:+	SCAPER	39745	chr15:77046289:-	ONLY_REF_SPLICE	YES	27	6	0.07	0.25	0.0102	0.0102	CCNT2->chr2:135675805-135716912:+,cyclin_T2,SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.25	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TATDN1--DEPTOR	1	1	TATDN1	8556	chr8:125527987:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	37	4	0.05	0.33	0.0102	0.0102	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.33	0.0204	TRUE	0	0	0	6	0	TRUE	ACH-000294
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TPH2	111	63	CS	1233	chr12:56693944:-	TPH2	37003	chr12:72469260:+	ONLY_REF_SPLICE	YES	269	0	0.39	1	1.2239	0.6947	CS->chr12:56665483-56694176:-,citrate_synthase,TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	1.9186	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRPK2--RP11-788H18.1	29	16	SRPK2	2897	chr7:105029095:-	RP11-788H18.1	30921	chr12:84665127:+	INCL_NON_REF_SPLICE	YES	31	0	0.59	1	0.3198	0.1764	SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,RP11-788H18.1->chr12:84665119-84688341:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.4962	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TPH2	6	67	CS	2648	chr12:56692393:-	TPH2	37003	chr12:72469260:+	ONLY_REF_SPLICE	YES	300	0	0.2	1	0.0662	0.7388	CS->chr12:56665483-56694176:-,citrate_synthase,TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.805	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TPH2	6	65	CS	1565	chr12:56693612:-	TPH2	37003	chr12:72469260:+	ONLY_REF_SPLICE	YES	300	0	0.19	1	0.0662	0.7167	CS->chr12:56665483-56694176:-,citrate_synthase,TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.7829	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TPH2	5	67	CS	3811	chr12:56685415:-	TPH2	37003	chr12:72469260:+	ONLY_REF_SPLICE	YES	300	0	0.19	1	0.0551	0.7388	CS->chr12:56665483-56694176:-,citrate_synthase,TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.7939	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TPH2	1	67	CS	4222	chr12:56685004:-	TPH2	37003	chr12:72469260:+	ONLY_REF_SPLICE	NO	302	0	0.18	1	0.011	0.7388	CS->chr12:56665483-56694176:-,citrate_synthase,TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.7498	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--MVD	16	5	CBFA2T3	1548	chr16:89043065:-	MVD	26092	chr16:88725128:-	ONLY_REF_SPLICE	YES	32	104	0.4	0.17	0.1764	0.0551	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,MVD->chr16:88718343-88729569:-,mevalonate_diphosphate_decarboxylase	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.4	0.2315	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TPH2	13	12	CS	1233	chr12:56693944:-	TPH2	38232	chr12:72499428:+	ONLY_REF_SPLICE	YES	269	20	0.09	0.56	0.1433	0.1323	CS->chr12:56665483-56694176:-,citrate_synthase,TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.56	0.2756	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TRHDE	13	12	CS	1233	chr12:56693944:-	TRHDE	18917	chr12:72499428:+	ONLY_REF_SPLICE	YES	269	0	0.09	1	0.1433	0.1323	CS->chr12:56665483-56694176:-,citrate_synthase,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.2756	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-548K16.2--SMAD1	14	4	CTC-548K16.2	4562	chr19:14458127:-	SMAD1	17518	chr4:146435590:+	ONLY_REF_SPLICE	YES	0	24	1	0.43	0.1544	0.0441	CTC-548K16.2->chr19:14416270-14481008:-,SMAD1->SMAD_family_member_1,chr4:146402346-146479231:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.1985	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD97--CTC-548K16.2	11	11	CD97	3414	chr19:14499630:+	CTC-548K16.2	19000	chr19:14480911:-	INCL_NON_REF_SPLICE	YES	35	0	0.39	1	0.1213	0.1213	LOCAL_INVERSION:+:-:[10305],CD97->Oncogene{Bushman},chr19:14491313-14519537:+,CTC-548K16.2->chr19:14416270-14481008:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.2426	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD97--CTC-548K16.2	11	7	CD97	3096	chr19:14499312:+	CTC-548K16.2	19000	chr19:14480911:-	INCL_NON_REF_SPLICE	YES	53	0	0.25	1	0.1213	0.0772	LOCAL_INVERSION:+:-:[10305],CD97->Oncogene{Bushman},chr19:14491313-14519537:+,CTC-548K16.2->chr19:14416270-14481008:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.1985	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCND1--RPS28	11	0	CCND1	1195	chr11:69456049:+	RPS28	12567	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1213	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD97--CTC-548K16.2	10	4	CD97	2045	chr19:14492357:+	CTC-548K16.2	19000	chr19:14480911:-	INCL_NON_REF_SPLICE	YES	41	0	0.25	1	0.1103	0.0441	LOCAL_INVERSION:+:-:[10305],CD97->Oncogene{Bushman},chr19:14491313-14519537:+,CTC-548K16.2->chr19:14416270-14481008:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.1544	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--PTK7	6	0	ANKRD11	4629	chr16:89484692:-	PTK7	47630	chr6:43109406:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0662	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,PTK7->Oncogene{Bushman},chr6:43044006-43129457:+,protein_tyrosine_kinase_7_(inactive)	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP35--RP11-673F18.1	4	6	USP35	1346	chr11:77900203:+	RP11-673F18.1	18526	chr11:78467290:+	ONLY_REF_SPLICE	YES	8	0	0.56	1	0.0441	0.0662	USP35->chr11:77899858-77925757:+,ubiquitin_specific_peptidase_35,RP11-673F18.1->chr11:78460295-78467525:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.1103	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC25A--ASB18	4	2	CDC25A	1625	chr3:48229268:-	ASB18	27841	chr2:237146599:-	ONLY_REF_SPLICE	YES	81	0	0.07	1	0.0441	0.0221	CDC25A->Oncogene{Bushman},cell_division_cycle_25A,chr3:48198636-48229892:-,ASB18->ankyrin_repeat_and_SOCS_box_containing_18,chr2:237102095-237173052:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--MVD	3	5	CBFA2T3	4558	chr16:89007428:-	MVD	26092	chr16:88725128:-	ONLY_REF_SPLICE	YES	47	104	0.15	0.07	0.0331	0.0551	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,MVD->chr16:88718343-88729569:-,mevalonate_diphosphate_decarboxylase	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.15	0.0882	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARPC2--SH3PXD2A	3	0	ARPC2	4648	chr2:219093519:+	SH3PXD2A	30995	chr10:105420872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	ARPC2->actin_related_protein_2/3_complex_subunit_2,chr2:219081817-219119079:+,SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC4--RPLP1	3	0	DNAJC4	1551	chr11:63998300:+	RPLP1	8046	chr15:69745159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	DNAJC4->DnaJ_heat_shock_protein_family_(Hsp40)_member_C4,chr11:63997750-64001758:+,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELN--TYSND1	3	0	ELN	3702	chr7:73450914:+	TYSND1	30546	chr10:71905801:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin,TYSND1->chr10:71897737-71906432:-,trypsin_domain_containing_1	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	TRUE	0	0	0	2	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--DAZAP1	3	0	IGLL5	1480	chr22:23230439:+	DAZAP1	11586	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	{Klijn_CCL:Lymphoid=1},IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	3	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	TRUE	0	6	0	9	2	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BICD1--DENND5B	2	3	BICD1	5338	chr12:32447080:+	DENND5B	29221	chr12:31652605:-	ONLY_REF_SPLICE	YES	12	14	0.29	0.26	0.0221	0.0331	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.29	0.0552	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGDIA--ACTG1	2	0	ARHGDIA	1109	chr17:79829174:-	ACTG1	10501	chr17:79479386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL6--SQLE	2	0	ARL6	6927	chr3:97503893:+	SQLE	24694	chr8:126023779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	ARL6->ADP_ribosylation_factor_like_GTPase_6,chr3:97483365-97519953:+,SQLE->chr8:126010739-126034525:+,squalene_epoxidase	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--OCIAD1	2	0	DANCR	1530	chr4:53579126:+	OCIAD1	20878	chr4:48862742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,OCIAD1->OCIA_domain_containing_1,chr4:48807229-48863834:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IP6K1--RHOA	2	0	IP6K1	1189	chr3:49823787:-	RHOA	17945	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	1	0	1	1	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NR6A1--XKR6	2	0	NR6A1	2333	chr9:127495587:-	XKR6	24702	chr8:10971602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	NR6A1->chr9:127279554-127533589:-,nuclear_receptor_subfamily_6_group_A_member_1,XKR6->XK_related_6,chr8:10753555-11058875:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ORC6--RP11-296I10.6	2	0	ORC6	4279	chr16:46727094:+	RP11-296I10.6	25755	chr16:70256383:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	ORC6->chr16:46723555-46732306:+,origin_recognition_complex_subunit_6,RP11-296I10.6->chr16:70253477-70279519:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAFAH1B2--NADSYN1	2	0	PAFAH1B2	1152	chr11:117015134:+	NADSYN1	40848	chr11:71201891:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRS--DNMT1	2	0	PTPRS	16790	chr19:5238930:-	DNMT1	73605	chr19:10251004:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	PTPRS->chr19:5158506-5340814:-,protein_tyrosine_phosphatase,_receptor_type_S,DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-16E12.2--FAM120A	2	0	RP11-16E12.2	2271	chr15:31521475:-	FAM120A	25797	chr9:96320109:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	RP11-16E12.2->chr15:31514202-31523041:-,FAM120A->chr9:96214004-96328397:+,family_with_sequence_similarity_120A	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--UBE2D2	2	0	RPS3	1092	chr11:75110621:+	UBE2D2	16407	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3B3--H2AFV	2	0	SF3B3	28255	chr16:70604052:+	H2AFV	40427	chr7:44874161:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC39A7--IGH@	2	0	SLC39A7	1494	chr6:33168715:+	IGH@	114116	chr14:106236323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SLC39A7->chr6:33168222-33172216:+,solute_carrier_family_39_member_7,IGH@->Oncogene{Bushman}	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	7741	7971	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	669	488	0.96	0.97	44.4897	45.8116	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.96	0.97	90.3013	TRUE	0	1	0	12	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	31	7972	CTC-228N24.2	1195	chr5:127193302:-	CTC-228N24.3	17759	chr5:127302620:-	INCL_NON_REF_SPLICE	YES	703	488	0.92	0.94	0.1782	45.8173	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.92	0.94	45.9955	TRUE	0	1	0	12	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	4	7976	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	9867	chr5:127396936:-	ONLY_REF_SPLICE	YES	669	518	0.92	0.94	0.023	45.8403	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.92	0.94	45.8633	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	5	7490	CTC-228N24.2	1186	chr5:127193311:-	CTC-228N24.3	17759	chr5:127302620:-	INCL_NON_REF_SPLICE	YES	667	488	0.92	0.94	0.0287	43.0472	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.92	0.94	43.0759	TRUE	0	1	0	12	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CCZ1--OCM	469	418	CCZ1	5832	chr7:5944900:+	OCM	22215	chr7:5923521:+	ONLY_REF_SPLICE	YES	596	1	0.6	1	2.6955	2.4024	LOCAL_REARRANGEMENT:+:[12363],CCZ1->CCZ1_homolog,_vacuolar_protein_trafficking_and_biogenesis_associated,chr7:5938356-5965605:+,OCM->chr7:5919458-5925993:+,oncomodulin	HT115_LARGE_INTESTINE	0.6	1	5.0979	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CCZ1B--OCM2	432	345	CCZ1B	6326	chr7:6859397:-	OCM2	25805	chr7:97616468:-	ONLY_REF_SPLICE	YES	768	0	0.5	1	2.4828	1.9828	CCZ1B->CCZ1_homolog_B,_vacuolar_protein_trafficking_and_biogenesis_associated,chr7:6833765-6866401:-,OCM2->chr7:97613996-97620481:-,oncomodulin_2	HT115_LARGE_INTESTINE	0.5	1	4.4656	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	PACSIN2--TTLL1	276	115	PACSIN2	1125	chr22:43411027:-	TTLL1	37017	chr22:43442579:-	ONLY_REF_SPLICE	YES	263	15	0.6	0.96	1.5863	0.6609	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[24371],PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,TTLL1->chr22:43435522-43485434:-,tubulin_tyrosine_ligase_like_1	HT115_LARGE_INTESTINE	0.6	0.96	2.2472	TRUE	0	1	0	1	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	FLOT1--LINC00243	200	105	FLOT1	3576	chr6:30707935:-	LINC00243	14145	chr6:30766549:-	ONLY_REF_SPLICE	YES	1475	0	0.17	1	1.1495	0.6035	LOCAL_REARRANGEMENT:-:[55921],FLOT1->chr6:30695486-30710510:-,flotillin_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	HT115_LARGE_INTESTINE	0.17	1	1.753	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	153	286	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	19800	chr5:127292613:-	ONLY_REF_SPLICE	YES	669	322	0.4	0.58	0.8793	1.6437	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.4	0.58	2.523	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	130	194	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	20918	chr5:127276912:-	ONLY_REF_SPLICE	YES	669	576	0.33	0.36	0.7471	1.115	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.33	0.36	1.8621	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	6	559	CTC-228N24.2	1066	chr5:127193431:-	CTC-228N24.3	17987	chr5:127302392:-	INCL_NON_REF_SPLICE	YES	1649	2613	0.26	0.18	0.0345	3.2127	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.18	0.26	3.2472	TRUE	0	1	0	12	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CCAT1--CASC8	68	80	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	11	5	0.93	0.97	0.3908	0.4598	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.93	0.97	0.8506	TRUE	0	26	0	18	24	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-255B23.4--CASC8	64	39	RP11-255B23.4	2391	chr8:128200030:-	CASC8	14642	chr8:128302305:-	ONLY_REF_SPLICE	YES	17	5	0.86	0.95	0.3678	0.2241	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.86	0.95	0.5919	TRUE	0	3	0	2	3	TRUE	ACH-000986
HT115_LARGE_INTESTINE	MARS--INHBC	54	33	MARS	6756	chr12:57884427:+	INHBC	21616	chr12:57843060:+	ONLY_REF_SPLICE	YES	1160	0	0.07	1	0.3104	0.1897	LOCAL_REARRANGEMENT:+:[24617],MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase,INHBC->chr12:57828543-57844611:+,inhibin_beta_C	HT115_LARGE_INTESTINE	0.07	1	0.5001	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	SLC12A2--CTC-228N24.1	23	36	SLC12A2	7895	chr5:127471500:+	CTC-228N24.1	45072	chr5:127211230:+	ONLY_REF_SPLICE	YES	1511	8	0.04	0.88	0.1322	0.2069	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,CTC-228N24.1->chr5:127039082-127277326:+	HT115_LARGE_INTESTINE	0.04	0.88	0.3391	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CREBL2--KIAA1467	25	14	CREBL2	4807	chr12:12790648:+	KIAA1467	21041	chr12:13224175:+	ONLY_REF_SPLICE	YES	247	28	0.14	0.58	0.1437	0.0805	{Klijn_CCL:Colo-Rectal=1},CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+,KIAA1467->chr12:13197218-13295455:+	HT115_LARGE_INTESTINE	0.14	0.58	0.2242	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CCAT1--CASC8	7	85	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	11	4	0.89	0.96	0.0402	0.4885	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.89	0.96	0.5287	TRUE	0	7	0	14	6	TRUE	ACH-000986
HT115_LARGE_INTESTINE	GPRC5A--RPL13AP20	25	4	GPRC5A	1883	chr12:13044598:+	RPL13AP20	14896	chr12:13028579:+	INCL_NON_REF_SPLICE	YES	87	76	0.25	0.28	0.1437	0.023	LOCAL_REARRANGEMENT:+:[14672],GPRC5A->G_protein-coupled_receptor_class_C_group_5_member_A,chr12:13043716-13070871:+,RPL13AP20->chr12:13028433-13029044:+,ribosomal_protein_L13a_pseudogene_20	HT115_LARGE_INTESTINE	0.25	0.28	0.1667	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	PACSIN2--TTLL1	3	83	PACSIN2	1125	chr22:43411027:-	TTLL1	37046	chr22:43442550:-	INCL_NON_REF_SPLICE	YES	263	13	0.25	0.87	0.0172	0.477	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[24371],PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,TTLL1->chr22:43435522-43485434:-,tubulin_tyrosine_ligase_like_1	HT115_LARGE_INTESTINE	0.25	0.87	0.4942	TRUE	0	1	0	1	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CCAT1--CASC8	1	85	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	11	9	0.89	0.91	0.0057	0.4885	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.89	0.91	0.4942	TRUE	0	7	0	7	7	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-479O16.1--MSMO1	19	0	RP11-479O16.1	5346	chr5:58037747:-	MSMO1	15454	chr4:166263475:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1092	0	RP11-479O16.1->chr5:58037408-58112926:-,MSMO1->chr4:166248775-166264312:+,methylsterol_monooxygenase_1	HT115_LARGE_INTESTINE	1	1	0.1092	TRUE	0	0	0	5	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	PACSIN2--TTLL1	11	31	PACSIN2	1125	chr22:43411027:-	TTLL1	38181	chr22:43435911:-	ONLY_REF_SPLICE	YES	263	23	0.14	0.65	0.0632	0.1782	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[24371],PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,TTLL1->chr22:43435522-43485434:-,tubulin_tyrosine_ligase_like_1	HT115_LARGE_INTESTINE	0.14	0.65	0.2414	TRUE	0	1	0	1	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	WIPF2--CASC3	14	2	WIPF2	1189	chr17:38375744:+	CASC3	22180	chr17:38318006:+	ONLY_REF_SPLICE	YES	35	342	0.31	0.04	0.0805	0.0115	LOCAL_REARRANGEMENT:+:[47120],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	HT115_LARGE_INTESTINE	0.04	0.31	0.092	TRUE	0	1	0	1	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	YEATS4--LYZ	12	10	YEATS4	7243	chr12:69764755:+	LYZ	13098	chr12:69743888:+	ONLY_REF_SPLICE	YES	442	11205	0.05	0	0.069	0.0575	LOCAL_REARRANGEMENT:+:[5469],YEATS4->YEATS_domain_containing_4,chr12:69753483-69784576:+,LYZ->chr12:69742121-69748014:+,lysozyme	HT115_LARGE_INTESTINE	0	0.05	0.1265	TRUE	0	7	0	3	6	TRUE	ACH-000986
HT115_LARGE_INTESTINE	AC144450.1--PXDN	13	4	AC144450.1	2515	chr2:1620939:-	PXDN	37253	chr2:1639293:-	ONLY_REF_SPLICE	YES	1	20	0.94	0.46	0.0747	0.023	LOCAL_REARRANGEMENT:-:[11774],AC144450.1->chr2:1550437-1623885:-,PXDN->chr2:1635659-1748624:-,peroxidasin	HT115_LARGE_INTESTINE	0.46	0.94	0.0977	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-255B23.4--CASC8	5	30	RP11-255B23.4	2379	chr8:128200042:-	CASC8	14642	chr8:128302305:-	INCL_NON_REF_SPLICE	YES	17	5	0.67	0.88	0.0287	0.1724	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.67	0.88	0.2011	TRUE	0	3	0	2	3	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-255B23.4--CASC8	1	39	RP11-255B23.4	2391	chr8:128200030:-	CASC8	13502	chr8:128335399:-	ONLY_REF_SPLICE	YES	17	4	0.7	0.91	0.0057	0.2241	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.7	0.91	0.2298	TRUE	0	1	0	2	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	GPRC5A--RPL13AP20	9	5	GPRC5A	1883	chr12:13044598:+	RPL13AP20	14738	chr12:13028421:+	INCL_NON_REF_SPLICE	YES	87	0	0.14	1	0.0517	0.0287	LOCAL_REARRANGEMENT:+:[14672],GPRC5A->G_protein-coupled_receptor_class_C_group_5_member_A,chr12:13043716-13070871:+,RPL13AP20->chr12:13028433-13029044:+,ribosomal_protein_L13a_pseudogene_20	HT115_LARGE_INTESTINE	0.14	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	BPTF--LRRC37A2	9	0	BPTF	1814	chr17:65822453:+	LRRC37A2	51890	chr17:44594728:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	BPTF->bromodomain_PHD_finger_transcription_factor,chr17:65821640-65980494:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	HT115_LARGE_INTESTINE	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	YEATS4--LYZ	9	0	YEATS4	2358	chr12:69755133:+	LYZ	15848	chr12:69747351:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	LOCAL_REARRANGEMENT:+:[5469],YEATS4->YEATS_domain_containing_4,chr12:69753483-69784576:+,LYZ->chr12:69742121-69748014:+,lysozyme	HT115_LARGE_INTESTINE	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-255B23.4--CASC8	8	3	RP11-255B23.4	1060	chr8:128215408:-	CASC8	14642	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	5	1	0.69	0.046	0.0172	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.69	1	0.0632	TRUE	0	9	0	3	9	TRUE	ACH-000986
HT115_LARGE_INTESTINE	DMPK--RSPH6A	3	11	DMPK	5781	chr19:46280585:-	RSPH6A	17929	chr19:46308274:-	ONLY_REF_SPLICE	YES	59	0	0.19	1	0.0172	0.0632	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[13158],DMPK->chr19:46272975-46285810:-,dystrophia_myotonica_protein_kinase,RSPH6A->chr19:46298968-46318577:-,radial_spoke_head_6_homolog_A	HT115_LARGE_INTESTINE	0.19	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	DMPK--RSPH6A	3	10	DMPK	5766	chr19:46280600:-	RSPH6A	17929	chr19:46308274:-	ONLY_REF_SPLICE	YES	59	0	0.18	1	0.0172	0.0575	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[13158],DMPK->chr19:46272975-46285810:-,dystrophia_myotonica_protein_kinase,RSPH6A->chr19:46298968-46318577:-,radial_spoke_head_6_homolog_A	HT115_LARGE_INTESTINE	0.18	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	DBP--MAMSTR	5	1	DBP	2859	chr19:49138837:-	MAMSTR	13436	chr19:49220000:-	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0287	0.0057	LOCAL_REARRANGEMENT:-:[75304],DBP->D-box_binding_PAR_bZIP_transcription_factor,chr19:49133287-49140695:-,MAMSTR->MEF2_activating_motif_and_SAP_domain_containing_transcriptional_regulator,chr19:49215999-49222978:-	HT115_LARGE_INTESTINE	0.43	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	OXSR1--SULT2A1	5	1	OXSR1	1858	chr3:38207437:+	SULT2A1	27918	chr19:48387042:-	ONLY_REF_SPLICE	YES	90	0	0.06	1	0.0287	0.0057	OXSR1->chr3:38206580-38296979:+,oxidative_stress_responsive_1,SULT2A1->chr19:48373723-48389654:-,sulfotransferase_family_2A_member_1	HT115_LARGE_INTESTINE	0.06	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	GCOM1--CGNL1	3	2	GCOM1	9060	chr15:57925939:+	CGNL1	56773	chr15:57835894:+	ONLY_REF_SPLICE	YES	88	0	0.05	1	0.0172	0.0115	LOCAL_REARRANGEMENT:+:[41181],GCOM1->GRINL1A_complex_locus_1,chr15:57884106-58006943:+,CGNL1->chr15:57668165-57842925:+,cingulin-like_1	HT115_LARGE_INTESTINE	0.05	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-274B21.1--RP11-155G14.5	3	2	RP11-274B21.1	6327	chr7:128220148:+	RP11-155G14.5	21140	chr7:128106617:+	ONLY_REF_SPLICE	YES	63	0	0.07	1	0.0172	0.0115	LOCAL_REARRANGEMENT:+:[62527],RP11-274B21.1->chr7:128171752-128269512:+,RP11-155G14.5->chr7:128106617-128109225:+	HT115_LARGE_INTESTINE	0.07	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	DIXDC1--HSPB2	3	1	DIXDC1	10723	chr11:111848519:+	HSPB2	32016	chr11:111784165:+	ONLY_REF_SPLICE	YES	2	3	0.67	0.57	0.0172	0.0057	LOCAL_REARRANGEMENT:+:[8294],DIXDC1->DIX_domain_containing_1,chr11:111797868-111893308:+,HSPB2->chr11:111782966-111789574:+,heat_shock_protein_family_B_(small)_member_2	HT115_LARGE_INTESTINE	0.57	0.67	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	LYZ--CCT2	3	0	LYZ	3682	chr12:69746078:+	CCT2	12770	chr12:69983265:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	LYZ->chr12:69742121-69748014:+,lysozyme,CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+	HT115_LARGE_INTESTINE	1	1	0.0172	TRUE	1	6	0	5	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RBM17--IGF2R	3	0	RBM17	5548	chr10:6147060:+	IGF2R	59177	chr6:160510139:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	RBM17->RNA_binding_motif_protein_17,chr10:6130950-6159420:+,IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor	HT115_LARGE_INTESTINE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-479O16.1--MSMO1	3	0	RP11-479O16.1	5344	chr5:58037749:-	MSMO1	15452	chr4:166263473:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	RP11-479O16.1->chr5:58037408-58112926:-,MSMO1->chr4:166248775-166264312:+,methylsterol_monooxygenase_1	HT115_LARGE_INTESTINE	1	1	0.0172	TRUE	0	0	0	5	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RPLP1--TAGLN2	3	0	RPLP1	1170	chr15:69745292:+	TAGLN2	12429	chr1:159888329:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,TAGLN2->chr1:159887897-159895522:-,transgelin_2	HT115_LARGE_INTESTINE	1	1	0.0172	TRUE	0	0	0	4	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	UCHL5--SLMAP	3	0	UCHL5	1923	chr1:193028315:-	SLMAP	35238	chr3:57875768:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	UCHL5->Oncogene{Bushman},chr1:192981380-193029237:-,ubiquitin_C-terminal_hydrolase_L5,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	HT115_LARGE_INTESTINE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-274B21.1--RP11-155G14.5	2	3	RP11-274B21.1	7495	chr7:128232071:+	RP11-155G14.5	21140	chr7:128106617:+	ONLY_REF_SPLICE	YES	51	0	0.09	1	0.0115	0.0172	LOCAL_REARRANGEMENT:+:[62527],RP11-274B21.1->chr7:128171752-128269512:+,RP11-155G14.5->chr7:128106617-128109225:+	HT115_LARGE_INTESTINE	0.09	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	AC073610.5--ZNF558	2	0	AC073610.5	1009	chr12:49333438:-	ZNF558	6859	chr19:8942077:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	AC073610.5->chr12:49315767-49333446:-,ZNF558->chr19:8920380-8943004:-,zinc_finger_protein_558	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	C14orf105--STYX	2	0	C14orf105	8353	chr14:57942300:-	STYX	18416	chr14:53213144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},C14orf105->chr14:57936019-57960585:-,chromosome_14_open_reading_frame_105,STYX->chr14:53196898-53241716:+,serine/threonine/tyrosine_interacting_protein	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	2	0	2	2	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CAPZB--MINOS1	2	0	CAPZB	1137	chr1:19811930:-	MINOS1	25045	chr1:19948594:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	GTEx_v2:{count=5;pct=0.06%;dist=Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1},CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	1	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CCDC14--MYH14	2	0	CCDC14	1574	chr3:123679991:-	MYH14	66269	chr19:50804918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14,MYH14->chr19:50691443-50813802:+,myosin,_heavy_chain_14,_non-muscle	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CNPY2--PKP2	2	0	CNPY2	2486	chr12:56708635:-	PKP2	23665	chr12:32955490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	CNPY2->canopy_FGF_signaling_regulator_2,chr12:56703626-56710120:-,PKP2->chr12:32943679-33049774:-,plakophilin_2	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTA-292E10.6--PITPNB	2	0	CTA-292E10.6	1055	chr22:29196725:+	PITPNB	16045	chr22:28293880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	CTA-292E10.6->chr22:29196671-29244547:+,PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	ERBB2IP--SET	2	0	ERBB2IP	1332	chr5:65222634:+	SET	43218	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	ERBB2IP->chr5:65222303-65378377:+,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	ERP44--COA6	2	0	ERP44	11146	chr9:102768788:-	COA6	20559	chr1:234509976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44,COA6->chr1:234509202-234519795:+,cytochrome_c_oxidase_assembly_factor_6	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	GIGYF2--EIF4E2	2	0	GIGYF2	1094	chr2:233562102:+	EIF4E2	63237	chr2:233428957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	GNAQ--METAP1	2	0	GNAQ	3129	chr9:80537077:-	METAP1	22549	chr4:99950018:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	GNAQ->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_q,Oncogene{Bushman},OncomapV4_panel,chr9:80331003-80646374:-,METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	MANBAL--ANXA2	2	0	MANBAL	1049	chr20:35918089:+	ANXA2	27671	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	MANBAL->chr20:35918041-35945663:+,mannosidase_beta_like,ANXA2->annexin_A2,chr15:60639333-60695082:-	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	METTL16--PAFAH1B1	2	0	METTL16	2261	chr17:2405498:-	PAFAH1B1	42805	chr17:2585023:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},LOCAL_INVERSION:-:+:[81319],METTL16->chr17:2308856-2415185:-,methyltransferase_like_16,PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	NAA25--TRAFD1	2	0	NAA25	1307	chr12:112546520:-	TRAFD1	37333	chr12:112568315:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	LOCAL_INVERSION:-:+:[16479],NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,TRAFD1->TRAF-type_zinc_finger_domain_containing_1,chr12:112563305-112591407:+	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	NOP2--NCAPD2	2	0	NOP2	1876	chr12:6676982:-	NCAPD2	23423	chr12:6630152:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	LOCAL_INVERSION:-:+:[24908],NOP2->NOP2_nucleolar_protein,chr12:6666029-6677857:-,NCAPD2->Oncogene{Bushman},chr12:6602522-6641121:+,non-SMC_condensin_I_complex_subunit_D2	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	OTUB1--COX8A	2	0	OTUB1	3602	chr11:63756224:+	COX8A	14254	chr11:63743697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[9310],OTUB1->OTU_deubiquitinase,_ubiquitin_aldehyde_binding_1,chr11:63753325-63769283:+,COX8A->chr11:63742079-63744015:+,cytochrome_c_oxidase_subunit_8A	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	1	0	4	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	PRRC2C--C12orf65	2	0	PRRC2C	10380	chr1:171491398:+	C12orf65	53034	chr12:123738194:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C,C12orf65->chr12:123717463-123742506:+,chromosome_12_open_reading_frame_65	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RBM6--RHOA	2	0	RBM6	1219	chr3:49977658:+	RHOA	37115	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Pituitary=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	1	0	1	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RBX1--PDCD4	2	0	RBX1	2209	chr22:41349637:+	PDCD4	15007	chr10:112640991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1,PDCD4->Oncogene{Bushman},chr10:112631565-112659764:+,programmed_cell_death_4_(neoplastic_transformation_inhibitor)	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-440L14.1--CTBP1	2	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	2	0	7	2	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP5-1033H22.2--RAF1	2	0	RP5-1033H22.2	1310	chr1:94058065:+	RAF1	28719	chr3:12626752:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	RP5-1033H22.2->chr1:94057756-94071130:+,RAF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},Raf-1_proto-oncogene,_serine/threonine_kinase,chr3:12625100-12705725:-	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RPTOR--TXNRD1	2	0	RPTOR	1973	chr17:78519591:+	TXNRD1	61801	chr12:104703537:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RPUSD3--TIAL1	2	0	RPUSD3	3620	chr3:9883667:-	TIAL1	21802	chr10:121336262:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	RPUSD3->RNA_pseudouridylate_synthase_domain_containing_3,chr3:9879533-9886286:-,TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	STK3--PSMB1	2	0	STK3	11120	chr8:99837743:-	PSMB1	41468	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	TBC1D5--WLS	2	0	TBC1D5	2479	chr3:17783973:-	WLS	57610	chr1:68659910:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,WLS->chr1:68564142-68698803:-,wntless_Wnt_ligand_secretion_mediator	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	TJP3--ZBTB7A	2	0	TJP3	1453	chr19:3708559:+	ZBTB7A	25259	chr19:4055245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	TJP3->chr19:3708107-3750811:+,tight_junction_protein_3,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	PRRG1--LANCL3	1	3	PRRG1	4586	chrX:37285253:+	LANCL3	17056	chrX:37514941:+	ONLY_REF_SPLICE	NO	81	11	0.05	0.27	0.0057	0.0172	PRRG1->chrX:37208528-37316548:+,proline_rich_and_Gla_domain_1,LANCL3->LanC_like_3,chrX:37430822-37543716:+	HT115_LARGE_INTESTINE	0.05	0.27	0.0229	TRUE	1	2	0	5	2	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RAPGEF6--CTD-2410N18.5	1	1	RAPGEF6	1275	chr5:130970655:-	CTD-2410N18.5	48968	chr5:133509713:-	ONLY_REF_SPLICE	YES	29	3	0.06	0.4	0.0057	0.0057	RAPGEF6->Rap_guanine_nucleotide_exchange_factor_6,chr5:130759614-130970929:-,CTD-2410N18.5->chr5:133502861-133561762:-	HT115_LARGE_INTESTINE	0.06	0.4	0.0114	TRUE	0	0	0	2	0	TRUE	ACH-000986
RS5_FIBROBLAST	CD63--TGFBI	122	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1072	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	RS5_FIBROBLAST	1	1	1.1072	TRUE	0	0	0	14	0	TRUE	ACH-000531
RS5_FIBROBLAST	CLTC--RPS6KB1	27	7	CLTC	2524	chr17:57721844:+	RPS6KB1	46421	chr17:58007478:+	ONLY_REF_SPLICE	YES	302	24	0.1	0.59	0.245	0.0635	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	RS5_FIBROBLAST	0.1	0.59	0.3085	TRUE	0	0	0	1	0	TRUE	ACH-000531
RS5_FIBROBLAST	COL1A2--COL15A1	27	0	COL1A2	8773	chr7:94035615:+	COL15A1	60203	chr9:101807017:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.245	0	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL15A1->chr9:101705461-101833069:+,collagen_type_XV_alpha_1	RS5_FIBROBLAST	1	1	0.245	TRUE	0	0	0	1	0	TRUE	ACH-000531
RS5_FIBROBLAST	COL1A2--TMED9	12	0	COL1A2	31189	chr7:94058708:+	TMED9	37553	chr5:177020686:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1089	0	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,TMED9->chr5:177019159-177023125:+,transmembrane_p24_trafficking_protein_9	RS5_FIBROBLAST	1	1	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000531
RS5_FIBROBLAST	CCDC50--HABP4	2	0	CCDC50	5893	chr3:191087825:+	HABP4	23986	chr9:99220661:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50,HABP4->chr9:99212483-99253618:+,hyaluronan_binding_protein_4	RS5_FIBROBLAST	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000531
RS5_FIBROBLAST	MAP4--PLXNB1	2	0	MAP4	1507	chr3:48130263:-	PLXNB1	51924	chr3:48456450:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,PLXNB1->Oncogene{Bushman},chr3:48445261-48471594:-,plexin_B1	RS5_FIBROBLAST	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000531
FUOV1_OVARY	MATR3--UBE2D2	542	60	MATR3	9772	chr5:138629494:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	58	46	0.91	0.93	7.1404	0.7904	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.91	0.93	7.9308	TRUE	0	3	0	1	3	TRUE	ACH-000574
FUOV1_OVARY	TPM1--TLN2	158	110	TPM1	11679	chr15:63354844:+	TLN2	83514	chr15:63097799:+	ONLY_REF_SPLICE	YES	842	26	0.24	0.91	2.0815	1.4491	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha),TLN2->chr15:62682725-63136830:+,talin_2	FUOV1_OVARY	0.24	0.91	3.5306	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	61	114	TECPR1	1858	chr7:97880706:-	OCM2	30927	chr7:97617860:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8036	1.5018	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	1	1	2.3054	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	GGA3--LINC00969	71	51	GGA3	8591	chr17:73237481:-	LINC00969	51115	chr3:195451551:+	ONLY_REF_SPLICE	YES	90	4	0.58	0.97	0.9354	0.6719	GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3,LINC00969->chr3:195384933-195460422:+,long_intergenic_non-protein_coding_RNA_969	FUOV1_OVARY	0.58	0.97	1.6073	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	44	131	TECPR1	1858	chr7:97880706:-	OCM2	29859	chr7:97619423:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5797	1.7258	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	1	1	2.3055	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	37	109	TECPR1	1833	chr7:97880731:-	OCM2	30927	chr7:97617860:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4874	1.436	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	1	1	1.9234	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	38	66	MATR3	9995	chr5:138629717:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	70	46	0.6	0.69	0.5006	0.8695	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.6	0.69	1.3701	TRUE	0	3	0	1	3	TRUE	ACH-000574
FUOV1_OVARY	RERE--CLSTN1	42	3	RERE	5242	chr1:8763114:-	CLSTN1	49076	chr1:9804701:-	ONLY_REF_SPLICE	YES	8	371	0.85	0.11	0.5533	0.0395	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,CLSTN1->calsyntenin_1,chr1:9789084-9884584:-	FUOV1_OVARY	0.11	0.85	0.5928	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	38	18	MATR3	4523	chr5:138614818:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	120	46	0.32	0.55	0.5006	0.2371	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.32	0.55	0.7377	TRUE	0	1	0	2	1	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	11	126	TECPR1	1833	chr7:97880731:-	OCM2	29859	chr7:97619423:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1449	1.6599	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	1	1	1.8048	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TPM1--TLN2	22	73	TPM1	11311	chr15:63354476:+	TLN2	83514	chr15:63097799:+	ONLY_REF_SPLICE	YES	941	26	0.09	0.79	0.2898	0.9617	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha),TLN2->chr15:62682725-63136830:+,talin_2	FUOV1_OVARY	0.09	0.79	1.2515	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	19	84	TECPR1	1858	chr7:97880706:-	OCM2	30962	chr7:97617825:-	INCL_NON_REF_SPLICE	YES	0	3	1	0.97	0.2503	1.1066	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.97	1	1.3569	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	6	82	TECPR1	1833	chr7:97880731:-	OCM2	30962	chr7:97617825:-	INCL_NON_REF_SPLICE	YES	0	3	1	0.97	0.079	1.0803	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.97	1	1.1593	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	RP11-512M8.5--SYNE1	19	16	RP11-512M8.5	1117	chr12:122750854:-	SYNE1	186902	chr6:152456367:-	ONLY_REF_SPLICE	YES	70	12	0.33	0.74	0.2503	0.2108	RP11-512M8.5->chr12:122692326-122750970:-,SYNE1->Oncogene{Bushman},chr6:152442819-152958936:-,spectrin_repeat_containing_nuclear_envelope_protein_1	FUOV1_OVARY	0.33	0.74	0.4611	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	4	69	MATR3	10067	chr5:138629789:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	72	46	0.5	0.61	0.0527	0.909	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.5	0.61	0.9617	TRUE	0	3	0	1	3	TRUE	ACH-000574
FUOV1_OVARY	MROH1--DGAT1	20	0	MROH1	1061	chr8:145202979:+	DGAT1	42724	chr8:145545071:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2635	0	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,DGAT1->chr8:145539954-145550573:-,diacylglycerol_O-acyltransferase_1	FUOV1_OVARY	1	1	0.2635	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	13	23	MATR3	9542	chr5:138629264:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	35	46	0.51	0.44	0.1713	0.303	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.44	0.51	0.4743	TRUE	0	3	0	1	3	TRUE	ACH-000574
FUOV1_OVARY	GGA3--LINC00969	3	61	GGA3	8591	chr17:73237481:-	LINC00969	49978	chr3:195449552:+	INCL_NON_REF_SPLICE	YES	90	0	0.42	1	0.0395	0.8036	GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3,LINC00969->chr3:195384933-195460422:+,long_intergenic_non-protein_coding_RNA_969	FUOV1_OVARY	0.42	1	0.8431	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	11	26	MATR3	9739	chr5:138629461:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	37	46	0.5	0.45	0.1449	0.3425	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.45	0.5	0.4874	TRUE	0	3	0	1	3	TRUE	ACH-000574
FUOV1_OVARY	HMGCR--RIMS2	15	8	HMGCR	11111	chr5:74646774:+	RIMS2	23678	chr8:104709314:+	ONLY_REF_SPLICE	YES	127	1	0.15	0.96	0.1976	0.1054	HMGCR->3-hydroxy-3-methylglutaryl-CoA_reductase,Oncogene{Bushman},chr5:74632154-74657929:+,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	FUOV1_OVARY	0.15	0.96	0.303	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	RERE--CLSTN1	14	2	RERE	1484	chr1:8877219:-	CLSTN1	49076	chr1:9804701:-	ONLY_REF_SPLICE	YES	4	371	0.8	0.04	0.1844	0.0263	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,CLSTN1->calsyntenin_1,chr1:9789084-9884584:-	FUOV1_OVARY	0.04	0.8	0.2107	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	4	41	TECPR1	1833	chr7:97880731:-	OCM2	32060	chr7:97616468:-	ONLY_REF_SPLICE	YES	0	44	1	0.51	0.0527	0.5401	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.51	1	0.5928	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	8	21	PLEC	3358	chr8:145047571:-	LINC00669	44658	chr18:36907915:-	ONLY_REF_SPLICE	YES	100	2	0.22	0.94	0.1054	0.2767	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.22	0.94	0.3821	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	2	44	MATR3	9772	chr5:138629494:+	UBE2D2	38294	chr5:138994171:+	ONLY_REF_SPLICE	YES	58	127	0.44	0.27	0.0263	0.5797	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.27	0.44	0.606	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	1	43	TECPR1	1858	chr7:97880706:-	OCM2	32060	chr7:97616468:-	ONLY_REF_SPLICE	YES	0	44	1	0.5	0.0132	0.5665	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.5	1	0.5797	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	10	6	TECPR1	1126	chr7:97881438:-	OCM2	30927	chr7:97617860:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1317	0.079	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.94	1	0.2107	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	SLC13A3--RILPL2	9	4	SLC13A3	17079	chr20:45212211:-	RILPL2	31431	chr12:123900468:-	ONLY_REF_SPLICE	YES	4	29	0.76	0.31	0.1186	0.0527	SLC13A3->chr20:45186463-45304714:-,solute_carrier_family_13_member_3,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	FUOV1_OVARY	0.31	0.76	0.1713	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	5	18	MATR3	7316	chr5:138619290:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	42	46	0.35	0.33	0.0659	0.2371	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.33	0.35	0.303	TRUE	0	1	0	1	1	TRUE	ACH-000574
FUOV1_OVARY	FBXL2--CMTM8	8	5	FBXL2	14579	chr3:33416910:+	CMTM8	29254	chr3:32398865:+	ONLY_REF_SPLICE	YES	11	12	0.54	0.52	0.1054	0.0659	FBXL2->F-box_and_leucine-rich_repeat_protein_2,chr3:33318517-33445154:+,CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+	FUOV1_OVARY	0.52	0.54	0.1713	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	7	8	PLEC	2231	chr8:145049345:-	LINC00669	44658	chr18:36907915:-	ONLY_REF_SPLICE	YES	31	2	0.33	0.88	0.0922	0.1054	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.33	0.88	0.1976	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	7	7	TECPR1	1126	chr7:97881438:-	OCM2	29859	chr7:97619423:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0922	0.0922	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.93	1	0.1844	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	3	21	PLEC	5758	chr8:145027894:-	LINC00669	44658	chr18:36907915:-	ONLY_REF_SPLICE	YES	108	2	0.18	0.92	0.0395	0.2767	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.18	0.92	0.3162	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	GPRIN1--UVSSA	8	0	GPRIN1	1135	chr5:176037000:-	UVSSA	10036	chr4:1341878:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1054	0	GPRIN1->G_protein_regulated_inducer_of_neurite_outgrowth_1,chr5:176022803-176037134:-,UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+	FUOV1_OVARY	1	1	0.1054	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	CDK5RAP1--DOCK3	6	6	CDK5RAP1	10249	chr20:31967267:-	DOCK3	26093	chr3:51101879:+	ONLY_REF_SPLICE	YES	176	13	0.06	0.48	0.079	0.079	CDK5RAP1->CDK5_regulatory_subunit_associated_protein_1,chr20:31946645-31989367:-,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	FUOV1_OVARY	0.06	0.48	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	4	10	PLEC	3358	chr8:145047571:-	LINC00669	46986	chr18:36788753:-	ONLY_REF_SPLICE	YES	100	2	0.12	0.88	0.0527	0.1317	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.12	0.88	0.1844	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	1	21	PLEC	12982	chr8:145013518:-	LINC00669	44658	chr18:36907915:-	ONLY_REF_SPLICE	NO	129	2	0.15	0.92	0.0132	0.2767	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.15	0.92	0.2899	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	1	21	PLEC	11741	chr8:145016560:-	LINC00669	44658	chr18:36907915:-	ONLY_REF_SPLICE	YES	116	2	0.16	0.92	0.0132	0.2767	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.16	0.92	0.2899	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PLCE1--SLC35G1	5	4	PLCE1	3840	chr10:95792009:+	SLC35G1	59505	chr10:95713766:+	ONLY_REF_SPLICE	YES	27	0	0.25	1	0.0659	0.0527	LOCAL_REARRANGEMENT:+:[37927],PLCE1->chr10:95753746-96092580:+,phospholipase_C_epsilon_1,SLC35G1->chr10:95653730-95715819:+,solute_carrier_family_35_member_G1	FUOV1_OVARY	0.25	1	0.1186	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	1	18	MATR3	5452	chr5:138615747:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	NO	67	46	0.22	0.29	0.0132	0.2371	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.22	0.29	0.2503	TRUE	0	1	0	1	1	TRUE	ACH-000574
FUOV1_OVARY	MROH1--SCRT1	5	0	MROH1	1061	chr8:145202979:+	SCRT1	42477	chr8:145557778:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0659	0	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,SCRT1->chr8:145554228-145559943:-,scratch_family_zinc_finger_1	FUOV1_OVARY	1	1	0.0659	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	LYPD6B--KIF5C	4	2	LYPD6B	7317	chr2:149987467:+	KIF5C	26449	chr2:149679706:+	ONLY_REF_SPLICE	YES	3	24	0.67	0.2	0.0527	0.0263	LOCAL_REARRANGEMENT:+:[11348],LYPD6B->LY6/PLAUR_domain_containing_6B,chr2:149894621-150071776:+,KIF5C->chr2:149632819-149883273:+,kinesin_family_member_5C	FUOV1_OVARY	0.2	0.67	0.079	TRUE	0	0	0	2	0	TRUE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	3	5	PLEC	2231	chr8:145049345:-	LINC00669	47736	chr18:36788003:-	INCL_NON_REF_SPLICE	YES	31	8	0.21	0.5	0.0395	0.0659	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.21	0.5	0.1054	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	DGAT1--MROH1	4	0	DGAT1	1474	chr8:145550100:-	MROH1	44560	chr8:145314814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	DGAT1->chr8:145539954-145550573:-,diacylglycerol_O-acyltransferase_1,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	FUOV1_OVARY	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	DOCK4--C7orf60	3	4	DOCK4	24592	chr7:111503428:-	C7orf60	67948	chr7:112472730:-	ONLY_REF_SPLICE	YES	4	22	0.64	0.24	0.0395	0.0527	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,C7orf60->chr7:112459202-112579971:-	FUOV1_OVARY	0.24	0.64	0.0922	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	4	0	MATR3	2720	chr5:138611839:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	DYNC2H1--NADSYN1	3	3	DYNC2H1	85677	chr11:103229087:+	NADSYN1	106806	chr11:71184615:+	ONLY_REF_SPLICE	YES	35	54	0.15	0.1	0.0395	0.0395	DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	FUOV1_OVARY	0.1	0.15	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	2	6	PLEC	2231	chr8:145049345:-	LINC00669	46986	chr18:36788753:-	ONLY_REF_SPLICE	YES	31	2	0.21	0.8	0.0263	0.079	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.21	0.8	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	1	10	PLEC	5758	chr8:145027894:-	LINC00669	46986	chr18:36788753:-	ONLY_REF_SPLICE	NO	108	2	0.09	0.85	0.0132	0.1317	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.09	0.85	0.1449	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	ATF7--ITGA5	3	1	ATF7	15239	chr12:53910799:-	ITGA5	38810	chr12:54792482:-	ONLY_REF_SPLICE	YES	27	42	0.13	0.09	0.0395	0.0132	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,ITGA5->chr12:54789045-54813244:-,integrin_subunit_alpha_5	FUOV1_OVARY	0.09	0.13	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	CDK5RAP2--STOM	3	0	CDK5RAP2	14744	chr9:123280705:-	STOM	53699	chr9:124116951:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,STOM->chr9:124101355-124132531:-,stomatin	FUOV1_OVARY	1	1	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	DGAT1--MROH1	3	0	DGAT1	1474	chr8:145550100:-	MROH1	45326	chr8:145315580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	DGAT1->chr8:145539954-145550573:-,diacylglycerol_O-acyltransferase_1,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	FUOV1_OVARY	1	1	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MLKL--KARS	3	0	MLKL	1508	chr16:74734351:-	KARS	21493	chr16:75675621:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	MLKL->chr16:74705753-74734858:-,mixed_lineage_kinase_domain-like,KARS->chr16:75661622-75682541:-,lysyl-tRNA_synthetase	FUOV1_OVARY	1	1	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	HMGCR--RIMS2	2	2	HMGCR	10536	chr5:74646199:+	RIMS2	23678	chr8:104709314:+	ONLY_REF_SPLICE	YES	103	1	0.04	0.8	0.0263	0.0263	HMGCR->3-hydroxy-3-methylglutaryl-CoA_reductase,Oncogene{Bushman},chr5:74632154-74657929:+,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	FUOV1_OVARY	0.04	0.8	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	2	2	TECPR1	1126	chr7:97881438:-	OCM2	32060	chr7:97616468:-	ONLY_REF_SPLICE	YES	1	44	0.8	0.08	0.0263	0.0263	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.08	0.8	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PDE4D--ELOVL7	2	1	PDE4D	26151	chr5:58571164:-	ELOVL7	61507	chr5:60095057:-	ONLY_REF_SPLICE	YES	2	23	0.6	0.12	0.0263	0.0132	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	FUOV1_OVARY	0.12	0.6	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	ANP32E--CGGBP1	2	0	ANP32E	4797	chr1:150202906:-	CGGBP1	19961	chr3:88105149:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,CGGBP1->CGG_triplet_repeat_binding_protein_1,chr3:88101094-88199035:-	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	ARHGAP29--BAZ2B	2	0	ARHGAP29	9685	chr1:94668656:-	BAZ2B	88653	chr2:160189197:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	ARHGEF3--CTNNB1	2	0	ARHGEF3	1104	chr3:57113254:-	CTNNB1	37954	chr3:41265512:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	ARHGEF3->Rho_guanine_nucleotide_exchange_factor_3,chr3:56761446-57113357:-,CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	ATF7--ITGA5	2	0	ATF7	13231	chr12:53917060:-	ITGA5	38810	chr12:54792482:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,ITGA5->chr12:54789045-54813244:-,integrin_subunit_alpha_5	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	FHIT--AKT2	2	0	FHIT	1159	chr3:61236975:-	AKT2	36191	chr19:40762961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	LSM14A--SCML1	2	0	LSM14A	10503	chr19:34712643:+	SCML1	21317	chrX:17764138:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,SCML1->chrX:17755588-17773105:+,sex_comb_on_midleg-like_1_(Drosophila)	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	NPC1--RIOK3	2	0	NPC1	14243	chr18:21127970:-	RIOK3	42511	chr18:21053393:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_INVERSION:-:+:[19581],NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,RIOK3->RIO_kinase_3,chr18:21032787-21066567:+	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	NUP214--SKIL	2	0	NUP214	13412	chr9:134020141:+	SKIL	54576	chr3:170102321:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PRMT10--ARL14EP	2	0	PRMT10	1432	chr4:148604950:-	ARL14EP	21745	chr11:30352433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	PRMT10->chr4:148558936-148605381:-,ARL14EP->ADP_ribosylation_factor_like_GTPase_14_effector_protein,chr11:30344598-30359774:+	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	SLC31A1--HSPA8	2	0	SLC31A1	1151	chr9:115983958:+	HSPA8	19556	chr11:122929538:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	SLC31A1->chr9:115983808-116028674:+,solute_carrier_family_31_member_1,HSPA8->chr11:122928197-122933938:-,heat_shock_protein_family_A_(Hsp70)_member_8	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TASP1--RP5-1069C8.2	2	0	TASP1	21244	chr20:13296617:-	RP5-1069C8.2	29257	chr20:12921584:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	TASP1->chr20:13246709-13619587:-,taspase_1,RP5-1069C8.2->chr20:12845850-12933167:-	FUOV1_OVARY	1	1	0.0263	TRUE	1	0	0	3	0	TRUE	ACH-000574
FUOV1_OVARY	TBC1D13--DANCR	2	0	TBC1D13	10388	chr9:131568590:+	DANCR	17402	chr4:53578991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	TBC1D13->TBC1_domain_family_member_13,chr9:131549483-131572711:+,DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TCF7L1--GTPBP10	2	0	TCF7L1	2041	chr2:85361573:+	GTPBP10	29617	chr7:89982130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	TCF7L1->chr2:85360533-85537511:+,transcription_factor_7_like_1,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PHF20--GNB1	1	1	PHF20	4583	chr20:34389527:+	GNB1	37038	chr1:1770677:-	ONLY_REF_SPLICE	NO	34	11	0.06	0.15	0.0132	0.0132	PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	FUOV1_OVARY	0.06	0.15	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000574
MEWO_SKIN	UBE2D3--RP11-499E18.1	52	42	UBE2D3	9405	chr4:103730829:-	RP11-499E18.1	20845	chr4:103371224:-	INCL_NON_REF_SPLICE	YES	314	0	0.23	1	0.7023	0.5673	UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,RP11-499E18.1->chr4:103339759-103371167:-	MEWO_SKIN	0.23	1	1.2696	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	TTC7B--CTD-3035D6.2	38	7	TTC7B	1305	chr14:91282519:-	CTD-3035D6.2	36679	chr14:91289497:-	ONLY_REF_SPLICE	YES	13	0	0.78	1	0.5133	0.0945	LOCAL_REARRANGEMENT:-:[5886],TTC7B->chr14:91006932-91282823:-,tetratricopeptide_repeat_domain_7B,CTD-3035D6.2->chr14:91288709-91294472:-	MEWO_SKIN	0.78	1	0.6078	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	UBE2D3--RP11-499E18.1	30	26	UBE2D3	9405	chr4:103730829:-	RP11-499E18.1	24682	chr4:103340145:-	ONLY_REF_SPLICE	YES	314	15	0.15	0.79	0.4052	0.3512	UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,RP11-499E18.1->chr4:103339759-103371167:-	MEWO_SKIN	0.15	0.79	0.7564	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	UBE2D3--RP11-499E18.1	14	33	UBE2D3	9405	chr4:103730829:-	RP11-499E18.1	23876	chr4:103340951:-	ONLY_REF_SPLICE	YES	314	6	0.13	0.89	0.1891	0.4457	UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,RP11-499E18.1->chr4:103339759-103371167:-	MEWO_SKIN	0.13	0.89	0.6348	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	UBE2D3--RP11-499E18.1	5	29	UBE2D3	9405	chr4:103730829:-	RP11-499E18.1	24311	chr4:103340516:-	ONLY_REF_SPLICE	YES	314	10	0.1	0.77	0.0675	0.3917	UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,RP11-499E18.1->chr4:103339759-103371167:-	MEWO_SKIN	0.1	0.77	0.4592	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	UBE2D3--RP11-499E18.1	1	33	UBE2D3	9405	chr4:103730829:-	RP11-499E18.1	22774	chr4:103351655:-	ONLY_REF_SPLICE	NO	314	6	0.1	0.85	0.0135	0.4457	UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,RP11-499E18.1->chr4:103339759-103371167:-	MEWO_SKIN	0.1	0.85	0.4592	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	TOM1L2--MYO15B	3	1	TOM1L2	2246	chr17:17810761:-	MYO15B	38619	chr17:73598911:+	ONLY_REF_SPLICE	YES	41	1	0.09	0.8	0.0405	0.0135	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,MYO15B->chr17:73584139-73622929:+,myosin_XVB	MEWO_SKIN	0.09	0.8	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	UBE2D3--RP11-499E18.1	1	7	UBE2D3	3857	chr4:103747642:-	RP11-499E18.1	24682	chr4:103340145:-	ONLY_REF_SPLICE	YES	219	15	0.04	0.35	0.0135	0.0945	UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,RP11-499E18.1->chr4:103339759-103371167:-	MEWO_SKIN	0.04	0.35	0.108	TRUE	0	1	0	1	1	TRUE	ACH-000987
MEWO_SKIN	ITPR2--ZMYM2	2	0	ITPR2	46094	chr12:26636631:-	ZMYM2	92783	chr13:20640991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2	MEWO_SKIN	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	MREG--XXbac-BPG308J9.3	2	0	MREG	7114	chr2:216810294:-	XXbac-BPG308J9.3	14660	chr6:29257903:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	MREG->chr2:216809213-216898819:-,melanoregulin,XXbac-BPG308J9.3->chr6:29191750-29258217:+	MEWO_SKIN	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	PMEL--SDCCAG3	2	0	PMEL	4690	chr12:56359720:-	SDCCAG3	17436	chr9:139302390:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,SDCCAG3->chr9:139296377-139305061:-,serologically_defined_colon_cancer_antigen_3	MEWO_SKIN	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	POLR2F--CSNK1E	2	0	POLR2F	12042	chr22:38382319:+	CSNK1E	29171	chr22:38710174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},POLR2F->chr22:38348614-38437922:+,polymerase_(RNA)_II_subunit_F,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	MEWO_SKIN	1	1	0.027	TRUE	0	0	0	2	0	TRUE	ACH-000987
MEWO_SKIN	RBM6--EXOG	2	0	RBM6	1219	chr3:49977658:+	EXOG	39069	chr3:38542846:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,EXOG->chr3:38537618-38583652:+,endo/exonuclease_(5'-3'),_endonuclease_G-like	MEWO_SKIN	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	ZNF106--ACTN1	2	0	ZNF106	13210	chr15:42736400:-	ACTN1	64672	chr14:69341734:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	ZNF106->chr15:42705021-42783321:-,zinc_finger_protein_106,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	MEWO_SKIN	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000987
NCIH524_LUNG	NOS2--MYO18A	46	17	NOS2	13193	chr17:26099334:-	MYO18A	53887	chr17:27430682:-	ONLY_REF_SPLICE	YES	59	96	0.52	0.4	0.6046	0.2234	NOS2->chr17:26083792-26127525:-,nitric_oxide_synthase_2,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	NCIH524_LUNG	0.4	0.52	0.828	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	NSF--LRRC37A2	22	4	NSF	15332	chr17:44782220:+	LRRC37A2	33686	chr17:44594728:+	ONLY_REF_SPLICE	YES	173	18	0.13	0.59	0.2891	0.0526	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	NCIH524_LUNG	0.13	0.59	0.3417	TRUE	1	0	0	3	0	TRUE	ACH-000816
NCIH524_LUNG	NSF--LRRC37A2	8	5	NSF	15332	chr17:44782220:+	LRRC37A2	28875	chr17:44588877:+	ONLY_REF_SPLICE	YES	173	0	0.07	1	0.1051	0.0657	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	NCIH524_LUNG	0.07	1	0.1708	TRUE	1	0	0	3	0	TRUE	ACH-000816
NCIH524_LUNG	DHRS7B--TNFRSF13B	6	1	DHRS7B	2421	chr17:21030304:+	TNFRSF13B	22297	chr17:16843825:-	ONLY_REF_SPLICE	YES	0	8	1	0.47	0.0789	0.0131	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,TNFRSF13B->Oncogene{Bushman},chr17:16832849-16875432:-,tumor_necrosis_factor_receptor_superfamily_member_13B	NCIH524_LUNG	0.47	1	0.092	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	GLP2R--WDR16	5	4	GLP2R	5864	chr17:9739792:+	WDR16	41685	chr17:9545041:+	ONLY_REF_SPLICE	YES	17	0	0.35	1	0.0657	0.0526	GLP2R->chr17:9725523-9795419:+,glucagon_like_peptide_2_receptor,WDR16->chr17:9479944-9546776:+	NCIH524_LUNG	0.35	1	0.1183	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	AC002472.13--SLC19A1	2	0	AC002472.13	2827	chr22:21402305:+	SLC19A1	20736	chr21:46957922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	AC002472.13->chr22:21400249-21418457:+,SLC19A1->Oncogene{Bushman},chr21:46913486-46964325:-,solute_carrier_family_19_member_1	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	APRT--GALNS	2	0	APRT	2522	chr16:88876831:-	GALNS	23718	chr16:88889118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_REARRANGEMENT:-:[1790],APRT->adenine_phosphoribosyltransferase,chr16:88875747-88878352:-,GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	CNPY2--RP11-762I7.5	2	0	CNPY2	2486	chr12:56708635:-	RP11-762I7.5	17422	chr12:56197512:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	CNPY2->canopy_FGF_signaling_regulator_2,chr12:56703626-56710120:-,RP11-762I7.5->chr12:56151059-56221330:-	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	MRPS27--MAP1B	2	0	MRPS27	1498	chr5:71615976:-	MAP1B	29496	chr5:71479570:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_INVERSION:-:+:[9841],MRPS27->chr5:71515236-71616473:-,mitochondrial_ribosomal_protein_S27,MAP1B->chr5:71403061-71505395:+,microtubule_associated_protein_1B	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	NSF--LRRC37A2	2	0	NSF	15332	chr17:44782220:+	LRRC37A2	44602	chr17:44630766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	RCC1--SNX5	2	0	RCC1	2175	chr1:28834672:+	SNX5	23224	chr20:17937681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	2	0	TRUE	ACH-000816
NCIH524_LUNG	RCC1--SNX5	2	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	NCIH524_LUNG	1	1	0.0263	TRUE	0	5	0	11	0	TRUE	ACH-000816
NCIH524_LUNG	RP11-242D8.1--ILF3	2	0	RP11-242D8.1	1278	chr17:41322143:-	ILF3	10679	chr19:10781192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RP11-242D8.1->chr17:41316200-41322420:-,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	RP11-308D16.4--CANX	2	0	RP11-308D16.4	1386	chrX:135991939:+	CANX	20953	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RP11-308D16.4->chrX:135991554-136103789:+,CANX->calnexin,chr5:179105629-179157926:+	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	RPL31--FUS	2	0	RPL31	5008	chr2:101622533:+	FUS	20528	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RPL31->chr2:101618177-101640494:+,ribosomal_protein_L31,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	1	1	0	TRUE	ACH-000816
NCIH524_LUNG	UBR3--UBN1	2	0	UBR3	31210	chr2:170863700:+	UBN1	65520	chr16:4926872:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative),UBN1->chr16:4896666-4932361:+,ubinuclein_1	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	GLP2R--USP43	1	2	GLP2R	5864	chr17:9739792:+	USP43	26956	chr17:9559720:+	ONLY_REF_SPLICE	YES	17	8	0.15	0.27	0.0131	0.0263	LOCAL_REARRANGEMENT:+:[92515],GLP2R->chr17:9725523-9795419:+,glucagon_like_peptide_2_receptor,USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43	NCIH524_LUNG	0.15	0.27	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	DHRS7B--TNFRSF13B	1	1	DHRS7B	2421	chr17:21030304:+	TNFRSF13B	24724	chr17:16836490:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0131	0.0131	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,TNFRSF13B->Oncogene{Bushman},chr17:16832849-16875432:-,tumor_necrosis_factor_receptor_superfamily_member_13B	NCIH524_LUNG	0.67	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	DHRS7B--TNFRSF13B	1	1	DHRS7B	2421	chr17:21030304:+	TNFRSF13B	24963	chr17:16836251:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0131	0.0131	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,TNFRSF13B->Oncogene{Bushman},chr17:16832849-16875432:-,tumor_necrosis_factor_receptor_superfamily_member_13B	NCIH524_LUNG	0.5	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	DHRS7B--TNFRSF13B	1	1	DHRS7B	2421	chr17:21030304:+	TNFRSF13B	21331	chr17:16844791:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0.0131	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,TNFRSF13B->Oncogene{Bushman},chr17:16832849-16875432:-,tumor_necrosis_factor_receptor_superfamily_member_13B	NCIH524_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000816
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAP1--PTPRD	32	16	UBAP1	1236	chr9:34179238:+	PTPRD	21458	chr9:9574781:-	ONLY_REF_SPLICE	YES	76	0	0.39	1	0.2944	0.1472	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.4416	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAP2--CBWD3	4	0	UBAP2	1125	chr9:34048823:-	CBWD3	39411	chr9:70860129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,CBWD3->COBW_domain_containing_3,chr9:70856397-70914929:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHMP3--GPR141	2	0	CHMP3	4551	chr2:86790427:-	GPR141	28779	chr7:37779982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	CHMP3->charged_multivesicular_body_protein_3,chr2:86730554-86948245:-,GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERC1--RP11-114G22.1	2	0	ERC1	26314	chr12:1399178:+	RP11-114G22.1	51880	chr12:23040898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,RP11-114G22.1->chr12:22852793-23327057:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPC--NCOA6	2	0	HNRNPC	1197	chr14:21737457:-	NCOA6	34315	chr20:33338322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2),NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--HSPA9	2	0	RCC1	2175	chr1:28834672:+	HSPA9	27823	chr5:137895780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RSBN1--LRIF1	2	0	RSBN1	1767	chr1:114354332:-	LRIF1	18322	chr1:111495437:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,LRIF1->chr1:111489807-111506701:-,ligand_dependent_nuclear_receptor_interacting_factor_1	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUCO--CEP350	2	0	SUCO	2149	chr1:172502637:+	CEP350	32637	chr1:179955304:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	SUCO->SUN_domain_containing_ossification_factor,chr1:172501489-172580971:+,CEP350->centrosomal_protein_350,chr1:179923873-180084015:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP48--LDLR	2	0	USP48	8734	chr1:22074631:-	LDLR	54704	chr19:11233850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48,LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	291	297	CTNND1	2585	chr11:57529518:+	SSRP1	31591	chr11:57102122:-	ONLY_REF_SPLICE	YES	163	295	0.78	0.67	3.5943	3.6685	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.67	0.78	7.2628	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	162	400	CTNND1	2585	chr11:57529518:+	SSRP1	30999	chr11:57102714:-	ONLY_REF_SPLICE	YES	163	19	0.78	0.97	2.001	4.9407	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.78	0.97	6.9417	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	39	302	CTNND1	2658	chr11:57529591:+	SSRP1	31591	chr11:57102122:-	ONLY_REF_SPLICE	YES	190	295	0.64	0.54	0.4817	3.7302	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.54	0.64	4.2119	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	9	406	CTNND1	2658	chr11:57529591:+	SSRP1	30999	chr11:57102714:-	ONLY_REF_SPLICE	YES	190	19	0.69	0.96	0.1112	5.0148	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.69	0.96	5.126	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	7	402	CTNND1	2584	chr11:57529517:+	SSRP1	30991	chr11:57102722:-	INCL_NON_REF_SPLICE	YES	163	19	0.72	0.96	0.0865	4.9654	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.72	0.96	5.0519	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	5	401	CTNND1	2607	chr11:57529540:+	SSRP1	30999	chr11:57102714:-	ONLY_REF_SPLICE	YES	190	19	0.68	0.96	0.0618	4.953	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.68	0.96	5.0148	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	5	298	CTNND1	2607	chr11:57529540:+	SSRP1	31591	chr11:57102122:-	ONLY_REF_SPLICE	YES	190	295	0.61	0.51	0.0618	3.6808	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.51	0.61	3.7426	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	43	74	CTNND1	2585	chr11:57529518:+	SSRP1	32699	chr11:57101014:-	ONLY_REF_SPLICE	YES	163	606	0.42	0.16	0.5311	0.914	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.16	0.42	1.4451	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	SOCS5--PREPL	49	32	SOCS5	1498	chr2:46926588:+	PREPL	15547	chr2:44573529:-	ONLY_REF_SPLICE	YES	79	31	0.51	0.72	0.6052	0.3953	SOCS5->chr2:46926091-46990268:+,suppressor_of_cytokine_signaling_5,PREPL->chr2:44543420-44589001:-,prolyl_endopeptidase-like	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.51	0.72	1.0005	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	DPH5--SLC30A7	48	24	DPH5	4639	chr1:101487197:-	SLC30A7	26984	chr1:101440366:+	ONLY_REF_SPLICE	YES	33	22	0.69	0.77	0.5929	0.2964	LOCAL_INVERSION:-:+:[7870],DPH5->chr1:101455179-101491644:-,diphthamide_biosynthesis_5,SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.69	0.77	0.8893	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	KANSL2--TMEM178B	45	12	KANSL2	3419	chr12:49073438:-	TMEM178B	18604	chr7:140912391:+	ONLY_REF_SPLICE	YES	45	1	0.56	0.98	0.5558	0.1482	KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-,TMEM178B->chr7:140774032-141180180:+,transmembrane_protein_178B	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.56	0.98	0.704	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	5	75	CTNND1	2658	chr11:57529591:+	SSRP1	32699	chr11:57101014:-	ONLY_REF_SPLICE	YES	190	606	0.3	0.12	0.0618	0.9264	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.12	0.3	0.9882	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	KANSL2--TMEM178B	14	12	KANSL2	4038	chr12:49072819:-	TMEM178B	18604	chr7:140912391:+	ONLY_REF_SPLICE	YES	43	1	0.38	0.96	0.1729	0.1482	KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-,TMEM178B->chr7:140774032-141180180:+,transmembrane_protein_178B	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.38	0.96	0.3211	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	PRKCE--MCFD2	14	5	PRKCE	24500	chr2:46231777:+	MCFD2	48531	chr2:47136316:-	ONLY_REF_SPLICE	YES	20	26	0.49	0.42	0.1729	0.0618	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,MCFD2->chr2:47129009-47168994:-,multiple_coagulation_factor_deficiency_2	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.42	0.49	0.2347	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	SCFD2--KIT	9	2	SCFD2	6695	chr4:54011500:-	KIT	16341	chr4:55561678:+	ONLY_REF_SPLICE	YES	57	12	0.16	0.48	0.1112	0.0247	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,KIT->ArcherDX_panel,FoundationOne_panel,KIT_proto-oncogene_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:55524085-55606881:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.16	0.48	0.1359	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	DDB1--DLG2	5	12	DDB1	7434	chr11:61096835:-	DLG2	32473	chr11:85337797:-	ONLY_REF_SPLICE	YES	173	2	0.09	0.89	0.0618	0.1482	DDB1->chr11:61066923-61110068:-,damage_specific_DNA_binding_protein_1,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.09	0.89	0.21	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	PCBP1-AS1--MTA3	6	3	PCBP1-AS1	16642	chr2:70278335:-	MTA3	53963	chr2:42909541:+	ONLY_REF_SPLICE	YES	14	37	0.39	0.2	0.0741	0.0371	PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.2	0.39	0.1112	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTD-2231H16.1--AHRR	5	0	CTD-2231H16.1	2324	chr5:113563:+	AHRR	17435	chr5:422844:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0618	0	CTD-2231H16.1->chr5:92266-139978:+,AHRR->aryl-hydrocarbon_receptor_repressor,chr5:304291-438406:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0618	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	VIM--SERPINH1	5	0	VIM	2119	chr10:17271376:+	SERPINH1	19135	chr11:75282926:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0618	0	VIM->chr10:17270258-17279592:+,vimentin,SERPINH1->chr11:75273101-75283828:+,serpin_family_H_member_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0618	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	SMURF1--C7orf33	4	0	SMURF1	1375	chr7:98741349:-	C7orf33	30494	chr7:148311134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0494	0	SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-,C7orf33->chr7:148287657-148312952:+,chromosome_7_open_reading_frame_33	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0494	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	SOCS5--PREPL	3	3	SOCS5	1160	chr2:46926250:+	PREPL	15547	chr2:44573529:-	ONLY_REF_SPLICE	YES	4	31	0.6	0.16	0.0371	0.0371	SOCS5->chr2:46926091-46990268:+,suppressor_of_cytokine_signaling_5,PREPL->chr2:44543420-44589001:-,prolyl_endopeptidase-like	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.16	0.6	0.0742	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	DPH5--SLC30A7	1	8	DPH5	1780	chr1:101490865:-	SLC30A7	26984	chr1:101440366:+	ONLY_REF_SPLICE	YES	85	22	0.1	0.29	0.0124	0.0988	LOCAL_INVERSION:-:+:[7870],DPH5->chr1:101455179-101491644:-,diphthamide_biosynthesis_5,SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.1	0.29	0.1112	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	GNE--TAF12	2	0	GNE	1163	chr9:36276891:-	TAF12	22950	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	GNE->chr9:36214438-36277053:-,glucosamine_(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine_kinase,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	STK38L--CACNA2D4	2	0	STK38L	1365	chr12:27397265:+	CACNA2D4	30607	chr12:1996235:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	PCBP1-AS1--MTA3	1	2	PCBP1-AS1	4300	chr2:70312679:-	MTA3	53963	chr2:42909541:+	ONLY_REF_SPLICE	YES	10	37	0.23	0.07	0.0124	0.0247	PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.07	0.23	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	FADS2--TMEM258	1	1	FADS2	1049	chr11:61560500:+	TMEM258	29821	chr11:61558074:-	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.0124	0.0124	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[178],FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,TMEM258->chr11:61535973-61560274:-,transmembrane_protein_258	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0248	TRUE	0	2	0	5	2	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	FMN1--SCG5	1	1	FMN1	30151	chr15:33149216:-	SCG5	52073	chr15:32971967:+	ONLY_REF_SPLICE	YES	45	1	0.04	0.67	0.0124	0.0124	GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hippocampus=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cortex=1},LOCAL_INVERSION:-:+:[68448],FMN1->chr15:33057747-33486897:-,formin_1,SCG5->chr15:32933877-32989299:+,secretogranin_V	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.04	0.67	0.0248	TRUE	0	1	0	1	0	TRUE	ACH-000323
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFPQ--ZFP36L1	44	35	SFPQ	11167	chr1:35646736:-	ZFP36L1	24268	chr14:69257209:-	ONLY_REF_SPLICE	YES	49	5	0.62	0.94	0.6095	0.4848	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.94	1.0943	TRUE	0	0	0	1	0	TRUE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFPQ--ZFP36L1	27	25	SFPQ	7033	chr1:35652602:-	ZFP36L1	24268	chr14:69257209:-	ONLY_REF_SPLICE	YES	361	5	0.13	0.91	0.374	0.3463	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.91	0.7203	TRUE	0	0	0	1	0	TRUE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-249H1.4--RP11-367G18.1	8	2	RP1-249H1.4	2789	chr6:114191469:-	RP11-367G18.1	10356	chr6:113948877:-	INCL_NON_REF_SPLICE	YES	39	0	0.2	1	0.1108	0.0277	RP1-249H1.4->chr6:114189178-114194516:-,RP11-367G18.1->chr6:113944737-113971276:-	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.1385	TRUE	0	0	0	3	0	TRUE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GOLGB1--IQCB1	1	1	GOLGB1	2844	chr3:121449723:-	IQCB1	37864	chr3:121545027:-	ONLY_REF_SPLICE	YES	8	51	0.2	0.04	0.0139	0.0139	LOCAL_REARRANGEMENT:-:[20008],GOLGB1->chr3:121382046-121468602:-,golgin_B1,IQCB1->IQ_motif_containing_B1,chr3:121488610-121553926:-	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.2	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000557
NCIH1618_LUNG	TET3--DGUOK	14	6	TET3	1454	chr2:74230293:+	DGUOK	27491	chr2:74173846:+	ONLY_REF_SPLICE	YES	11	325	0.65	0.06	0.1895	0.0812	LOCAL_REARRANGEMENT:+:[43752],TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,DGUOK->chr2:74153953-74186088:+,deoxyguanosine_kinase	NCIH1618_LUNG	0.06	0.65	0.2707	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	FAM211A--CTB-92J24.3	8	5	FAM211A	2538	chr17:16365572:-	CTB-92J24.3	15624	chr19:24103000:-	ONLY_REF_SPLICE	YES	24	0	0.35	1	0.1083	0.0677	FAM211A->chr17:16344891-16395467:-,CTB-92J24.3->chr19:24101883-24140732:-	NCIH1618_LUNG	0.35	1	0.176	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	CASC9--RP11-300E4.2	8	2	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	31	0	0.24	1	0.1083	0.0271	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH1618_LUNG	0.24	1	0.1354	TRUE	0	23	0	19	23	TRUE	ACH-000179
NCIH1618_LUNG	AC027612.3--AP000345.1	5	0	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0677	0	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH1618_LUNG	1	1	0.0677	TRUE	0	0	0	11	0	TRUE	ACH-000179
NCIH1618_LUNG	TET3--DGUOK	4	0	TET3	1454	chr2:74230293:+	DGUOK	31073	chr2:74185273:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0541	0	LOCAL_REARRANGEMENT:+:[43752],TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,DGUOK->chr2:74153953-74186088:+,deoxyguanosine_kinase	NCIH1618_LUNG	1	1	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	TET3--DGUOK	4	0	TET3	1454	chr2:74230293:+	DGUOK	30052	chr2:74184252:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0541	0	LOCAL_REARRANGEMENT:+:[43752],TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,DGUOK->chr2:74153953-74186088:+,deoxyguanosine_kinase	NCIH1618_LUNG	1	1	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	CASC9--RP11-300E4.2	3	0	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH1618_LUNG	1	1	0.0406	TRUE	0	12	0	10	12	TRUE	ACH-000179
NCIH1618_LUNG	RP11-394A14.2--ARNTL	3	0	RP11-394A14.2	4687	chr13:64413882:-	ARNTL	13352	chr11:13331534:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	RP11-394A14.2->chr13:64402973-64418258:-,ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+	NCIH1618_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	CUL3--MUS81	2	0	CUL3	8875	chr2:225400245:-	MUS81	37698	chr11:65628146:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,MUS81->MUS81_structure-specific_endonuclease_subunit,chr11:65624597-65635124:+	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	DGCR5--NARS2	2	0	DGCR5	16324	chr22:19002019:+	NARS2	30714	chr11:78189729:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	DGCR5->DiGeorge_syndrome_critical_region_gene_5_(non-protein_coding),chr22:18958027-19018755:+,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	FUBP1--IVNS1ABP	2	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH1618_LUNG	1	1	0.0271	TRUE	1	4	0	16	0	TRUE	ACH-000179
NCIH1618_LUNG	NDUFA9--CORO7	2	0	NDUFA9	3503	chr12:4764088:+	CORO7	41248	chr16:4409386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NDUFA9->NADH:ubiquinone_oxidoreductase_subunit_A9,chr12:4758261-4798454:+,CORO7->chr16:4404543-4475706:-,coronin_7	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	PRPSAP2--MGEA5	2	0	PRPSAP2	3378	chr17:18759742:+	MGEA5	44529	chr10:103547280:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	PRPSAP2->chr17:18743398-18834581:+,phosphoribosyl_pyrophosphate_synthetase_associated_protein_2,MGEA5->chr10:103544200-103578696:-,meningioma_expressed_antigen_5_(hyaluronidase)	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	PYGO2--MFF	2	0	PYGO2	1335	chr1:154935995:-	MFF	20423	chr2:228211942:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	PYGO2->chr1:154929502-154936329:-,pygopus_family_PHD_finger_2,MFF->chr2:228189867-228222550:+,mitochondrial_fission_factor	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	RP11-123O10.4--TBC1D30	2	0	RP11-123O10.4	1113	chr12:67462830:-	TBC1D30	16186	chr12:65230270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	RP11-123O10.4->chr12:67285656-67462942:-,TBC1D30->TBC1_domain_family_member_30,chr12:65174589-65274812:+	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	RUNX1T1--IVNS1ABP	2	0	RUNX1T1	6399	chr8:93088193:-	IVNS1ABP	44196	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	SSR2--TMEM70	2	0	SSR2	4941	chr1:155984752:-	TMEM70	18498	chr8:74893390:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	SSR2->chr1:155978839-155990750:-,signal_sequence_receptor,_beta_(translocon-associated_protein_beta),TMEM70->chr8:74884672-74895018:+,transmembrane_protein_70	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	TMEM161B--PTPRM	2	0	TMEM161B	1756	chr5:87564538:-	PTPRM	30214	chr18:7888104:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	TMEM161B->chr5:87485450-87565293:-,transmembrane_protein_161B,PTPRM->chr18:7566780-8406859:+,protein_tyrosine_phosphatase,_receptor_type_M	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	TMEM181--DYNLT1	2	0	TMEM181	6914	chr6:159010814:+	DYNLT1	27019	chr6:159058926:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Testis=1},LOCAL_INVERSION:+:-:[1046],TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	NCIH1618_LUNG	1	1	0.0271	TRUE	0	5	0	4	0	TRUE	ACH-000179
NCIH1618_LUNG	AC027612.3--AP000345.1	1	1	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0135	0.0135	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH1618_LUNG	1	1	0.027	TRUE	0	0	0	11	0	TRUE	ACH-000179
NCIH1618_LUNG	LYPLAL1--RRP15	1	1	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	55	56	0.04	0.03	0.0135	0.0135	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	NCIH1618_LUNG	0.03	0.04	0.027	TRUE	0	12	0	13	2	TRUE	ACH-000179
GCT_SOFT_TISSUE	UBE2L3--COMT	372	82	UBE2L3	4131	chr22:21947245:+	COMT	14843	chr22:19948722:+	ONLY_REF_SPLICE	YES	468	52	0.49	0.9	3.8476	0.8481	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,COMT->catechol-O-methyltransferase,chr22:19929130-19957498:+	GCT_SOFT_TISSUE	0.49	0.9	4.6957	TRUE	0	0	0	1	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	IFT43--CTC-420A11.2	9	1	IFT43	4808	chr14:76488737:+	CTC-420A11.2	17022	chr16:61968016:+	ONLY_REF_SPLICE	YES	31	0	0.24	1	0.0931	0.0103	IFT43->chr14:76368479-76550928:+,intraflagellar_transport_43,CTC-420A11.2->chr16:61952225-61974601:+	GCT_SOFT_TISSUE	0.24	1	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	UBE2L3--COMT	8	0	UBE2L3	2429	chr22:21922060:+	COMT	14843	chr22:19948722:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0827	0	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,COMT->catechol-O-methyltransferase,chr22:19929130-19957498:+	GCT_SOFT_TISSUE	1	1	0.0827	TRUE	0	0	0	1	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	VIM--FTH1	7	0	VIM	2124	chr10:17271381:+	FTH1	12402	chr11:61734935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0724	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	GCT_SOFT_TISSUE	1	1	0.0724	TRUE	0	0	0	6	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	AP003900.6--AC011718.2	3	6	AP003900.6	1122	chr21:11169841:+	AC011718.2	10127	chr22:20656897:-	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.031	0.0621	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	GCT_SOFT_TISSUE	0.64	1	0.0931	TRUE	0	0	0	11	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	B4GALT1--MXI1	2	0	B4GALT1	2835	chr9:33135187:-	MXI1	19930	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	GCT_SOFT_TISSUE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	RP11-307P5.1--SASH1	1	3	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	83	13	0.05	0.24	0.0103	0.031	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	GCT_SOFT_TISSUE	0.05	0.24	0.0413	TRUE	0	0	0	11	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	RP11-307P5.1--SASH1	1	2	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	14	13	0.18	0.19	0.0103	0.0207	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	GCT_SOFT_TISSUE	0.18	0.19	0.031	TRUE	0	0	0	16	0	TRUE	ACH-000835
NCIH2052_PLEURA	RAI1--ERI3	23	1	RAI1	1321	chr17:17585107:+	ERI3	28249	chr1:44774073:-	ONLY_REF_SPLICE	YES	2	151	0.92	0.14	0.2436	0.0106	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,ERI3->ERI1_exoribonuclease_family_member_3,chr1:44686742-44820932:-	NCIH2052_PLEURA	0.14	0.92	0.2542	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	AFAP1--ABLIM2	9	8	AFAP1	1271	chr4:7941383:-	ABLIM2	62065	chr4:7968830:-	ONLY_REF_SPLICE	YES	109	2	0.13	0.89	0.0953	0.0847	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	NCIH2052_PLEURA	0.13	0.89	0.18	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	CNTLN--ADAMTSL1	7	2	CNTLN	1444	chr9:17135423:+	ADAMTSL1	46529	chr9:18622241:+	ONLY_REF_SPLICE	YES	17	43	0.35	0.17	0.0741	0.0212	{Klijn_CCL:Other=1},CNTLN->centlein,chr9:17134980-17503921:+,ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+	NCIH2052_PLEURA	0.17	0.35	0.0953	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	HAUS8--ACP5	6	1	HAUS8	4421	chr19:17179841:-	ACP5	18184	chr19:11688494:-	ONLY_REF_SPLICE	YES	48	2	0.13	0.78	0.0635	0.0106	HAUS8->HAUS_augmin_like_complex_subunit_8,chr19:17160539-17186435:-,ACP5->acid_phosphatase_5,_tartrate_resistant,chr19:11685475-11689823:-	NCIH2052_PLEURA	0.13	0.78	0.0741	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	RAI1--ERI3	5	0	RAI1	1321	chr17:17585107:+	ERI3	29341	chr1:44750579:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.053	0	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,ERI3->ERI1_exoribonuclease_family_member_3,chr1:44686742-44820932:-	NCIH2052_PLEURA	1	1	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	AC004076.9--ZIM2	4	1	AC004076.9	1903	chr19:57988002:-	ZIM2	17994	chr19:57301319:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0424	0.0106	PROTCLUST,AC004076.9->chr19:57949338-57988904:-,ZIM2->chr19:57285920-57352097:-,zinc_finger_imprinted_2	NCIH2052_PLEURA	0.83	1	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	CNTLN--ADAMTSL1	4	0	CNTLN	1444	chr9:17135423:+	ADAMTSL1	77775	chr9:18892387:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0424	0	{Klijn_CCL:Other=1},CNTLN->centlein,chr9:17134980-17503921:+,ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+	NCIH2052_PLEURA	1	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	RP11-163F15.1--RP11-215N21.1	2	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	NO	2	0	0.6	1	0.0212	0.0106	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	NCIH2052_PLEURA	0.6	1	0.0318	TRUE	0	5	0	7	5	TRUE	ACH-000153
NCIH2052_PLEURA	ERRFI1--CAPZB	2	0	ERRFI1	1151	chr1:8086218:-	CAPZB	14861	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	NCIH2052_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	GAS6--RASA3	2	0	GAS6	1499	chr13:114566548:-	RASA3	24912	chr13:114806570:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	NCIH2052_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	RBM39--ZMYND8	2	0	RBM39	2788	chr20:34328447:-	ZMYND8	54195	chr20:45856024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	NCIH2052_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	TIMMDC1--GNAS	2	0	TIMMDC1	6578	chr3:119236162:+	GNAS	33494	chr20:57478586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	TIMMDC1->chr3:119217379-119243937:+,translocase_of_inner_mitochondrial_membrane_domain_containing_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2052_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	PMP22--RIBC1	1	3	PMP22	4923	chr17:15162411:-	RIBC1	14634	chrX:53453225:+	ONLY_REF_SPLICE	YES	102	0	0.04	1	0.0106	0.0318	PMP22->chr17:15133095-15168643:-,peripheral_myelin_protein_22,RIBC1->RIB43A_domain_with_coiled-coils_1,chrX:53449639-53458059:+	NCIH2052_PLEURA	0.04	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	TBL1XR1--RP11-71G7.1	1	2	TBL1XR1	20757	chr3:176750759:-	RP11-71G7.1	36567	chr3:176344134:-	ONLY_REF_SPLICE	YES	24	0	0.11	1	0.0106	0.0212	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-71G7.1->chr3:176321931-176353320:-	NCIH2052_PLEURA	0.11	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	AC004076.9--ZIM2	1	1	AC004076.9	1260	chr19:57988645:-	ZIM2	17994	chr19:57301319:-	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0106	0.0106	PROTCLUST,AC004076.9->chr19:57949338-57988904:-,ZIM2->chr19:57285920-57352097:-,zinc_finger_imprinted_2	NCIH2052_PLEURA	0.4	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	TRIT1--PPIE	1	1	TRIT1	1194	chr1:40348990:-	PPIE	34056	chr1:40229361:+	ONLY_REF_SPLICE	YES	49	4	0.04	0.33	0.0106	0.0106	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH2052_PLEURA	0.04	0.33	0.0212	TRUE	0	0	0	4	0	TRUE	ACH-000153
DMS79_LUNG	NUP98--CTA-392E5.1	135	107	NUP98	7311	chr11:3792978:-	CTA-392E5.1	47339	chr8:86898164:+	ONLY_REF_SPLICE	YES	121	0	0.67	1	1.756	1.3918	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,CTA-392E5.1->chr8:86851934-86963312:+	DMS79_LUNG	0.67	1	3.1478	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	NFIX--GCDH	103	49	NFIX	4898	chr19:13136366:+	GCDH	31188	chr19:13024809:+	ONLY_REF_SPLICE	YES	205	6	0.43	0.96	1.3398	0.6374	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[81401],NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,GCDH->chr19:13001840-13025021:+,glutaryl-CoA_dehydrogenase	DMS79_LUNG	0.43	0.96	1.9772	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	TESC--FBXO21	61	36	TESC	5360	chr12:117494611:-	FBXO21	18469	chr12:117615446:-	ONLY_REF_SPLICE	YES	335	139	0.22	0.41	0.7935	0.4683	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[43862],TESC->chr12:117476728-117537284:-,tescalcin,FBXO21->F-box_protein_21,chr12:117581146-117628336:-	DMS79_LUNG	0.22	0.41	1.2618	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	NUP98--CTA-392E5.1	30	52	NUP98	7311	chr11:3792978:-	CTA-392E5.1	49530	chr8:86920542:+	ONLY_REF_SPLICE	YES	121	1	0.4	0.99	0.3902	0.6764	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,CTA-392E5.1->chr8:86851934-86963312:+	DMS79_LUNG	0.4	0.99	1.0666	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	PTK2--TSNARE1	26	30	PTK2	57117	chr8:141675016:-	TSNARE1	77554	chr8:143382008:-	ONLY_REF_SPLICE	YES	393	55	0.12	0.5	0.3382	0.3902	{Klijn_CCL:Lung=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1	DMS79_LUNG	0.12	0.5	0.7284	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	PTK2--TSNARE1	22	30	PTK2	57117	chr8:141675016:-	TSNARE1	77557	chr8:143382005:-	ONLY_REF_SPLICE	YES	393	53	0.12	0.5	0.2862	0.3902	{Klijn_CCL:Lung=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1	DMS79_LUNG	0.12	0.5	0.6764	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	NUP98--CTA-392E5.1	4	81	NUP98	7284	chr11:3793005:-	CTA-392E5.1	47339	chr8:86898164:+	INCL_NON_REF_SPLICE	YES	101	0	0.46	1	0.052	1.0536	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,CTA-392E5.1->chr8:86851934-86963312:+	DMS79_LUNG	0.46	1	1.1056	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	C1orf56--SETDB1	19	17	C1orf56	3715	chr1:151022930:+	SETDB1	16197	chr1:150916396:+	INCL_NON_REF_SPLICE	YES	2	102	0.95	0.26	0.2471	0.2211	LOCAL_REARRANGEMENT:+:[83003],C1orf56->chr1:151020216-151024462:+,chromosome_1_open_reading_frame_56,SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+	DMS79_LUNG	0.26	0.95	0.4682	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	NUP98--CTA-392E5.1	11	37	NUP98	7191	chr11:3793098:-	CTA-392E5.1	47339	chr8:86898164:+	INCL_NON_REF_SPLICE	YES	98	0	0.33	1	0.1431	0.4813	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,CTA-392E5.1->chr8:86851934-86963312:+	DMS79_LUNG	0.33	1	0.6244	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	WNK2--C9orf89	13	8	WNK2	19520	chr9:96031028:+	C9orf89	40944	chr9:95869956:+	ONLY_REF_SPLICE	YES	57	19	0.27	0.53	0.1691	0.1041	LOCAL_REARRANGEMENT:+:[71633],WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+,C9orf89->chr9:95858500-95875565:+	DMS79_LUNG	0.27	0.53	0.2732	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	NUP98--CTA-392E5.1	4	41	NUP98	7284	chr11:3793005:-	CTA-392E5.1	49530	chr8:86920542:+	INCL_NON_REF_SPLICE	YES	101	1	0.31	0.98	0.052	0.5333	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,CTA-392E5.1->chr8:86851934-86963312:+	DMS79_LUNG	0.31	0.98	0.5853	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	TESC--FBXO21	10	13	TESC	4279	chr12:117513076:-	FBXO21	18469	chr12:117615446:-	ONLY_REF_SPLICE	YES	137	139	0.14	0.14	0.1301	0.1691	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[43862],TESC->chr12:117476728-117537284:-,tescalcin,FBXO21->F-box_protein_21,chr12:117581146-117628336:-	DMS79_LUNG	0.14	0.14	0.2992	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	SHANK2--RP11-9B6.1	13	0	SHANK2	23844	chr11:70742606:-	RP11-9B6.1	63709	chr4:93222036:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1691	0	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,RP11-9B6.1->chr4:93218402-93225329:-	DMS79_LUNG	1	1	0.1691	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	ARID1B--TPRG1	11	6	ARID1B	2543	chr6:157100605:+	TPRG1	66096	chr3:189028175:+	ONLY_REF_SPLICE	YES	18	0	0.49	1	0.1431	0.078	ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	DMS79_LUNG	0.49	1	0.2211	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	NUP98--CTA-392E5.1	5	27	NUP98	6130	chr11:3794862:-	CTA-392E5.1	47339	chr8:86898164:+	ONLY_REF_SPLICE	YES	164	0	0.16	1	0.065	0.3512	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,CTA-392E5.1->chr8:86851934-86963312:+	DMS79_LUNG	0.16	1	0.4162	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	CREBBP--ADCY9	7	15	CREBBP	4785	chr16:3860604:-	ADCY9	49220	chr16:4057559:-	ONLY_REF_SPLICE	YES	126	28	0.15	0.44	0.0911	0.1951	LOCAL_REARRANGEMENT:-:[72661],CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-	DMS79_LUNG	0.15	0.44	0.2862	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	ARMC8--CPNE4	9	2	ARMC8	1333	chr3:137906441:+	CPNE4	42289	chr3:131624288:-	ONLY_REF_SPLICE	YES	29	74	0.28	0.13	0.1171	0.026	ARMC8->armadillo_repeat_containing_8,chr3:137906109-138017231:+,CPNE4->chr3:131252399-132004254:-,copine_4	DMS79_LUNG	0.13	0.28	0.1431	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	RP11-112J1.2--DAAM1	8	3	RP11-112J1.2	6942	chr14:59415059:+	DAAM1	13257	chr14:59730159:+	ONLY_REF_SPLICE	YES	0	33	1	0.25	0.1041	0.039	RP11-112J1.2->chr14:59294952-59484046:+,DAAM1->chr14:59655364-59838123:+,dishevelled_associated_activator_of_morphogenesis_1	DMS79_LUNG	0.25	1	0.1431	TRUE	0	0	0	2	0	TRUE	ACH-000703
DMS79_LUNG	C1orf56--SETDB1	5	13	C1orf56	2113	chr1:151021328:+	SETDB1	16197	chr1:150916396:+	ONLY_REF_SPLICE	YES	5	102	0.78	0.15	0.065	0.1691	LOCAL_REARRANGEMENT:+:[83003],C1orf56->chr1:151020216-151024462:+,chromosome_1_open_reading_frame_56,SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+	DMS79_LUNG	0.15	0.78	0.2341	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	OSBPL2--RP4-530I15.6	4	10	OSBPL2	13696	chr20:60861767:+	RP4-530I15.6	24641	chr20:49270483:+	ONLY_REF_SPLICE	YES	106	0	0.12	1	0.052	0.1301	OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,RP4-530I15.6->chr20:49262008-49278812:+	DMS79_LUNG	0.12	1	0.1821	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	C1orf56--SETDB1	2	17	C1orf56	3745	chr1:151022960:+	SETDB1	16197	chr1:150916396:+	ONLY_REF_SPLICE	YES	3	102	0.86	0.16	0.026	0.2211	LOCAL_REARRANGEMENT:+:[83003],C1orf56->chr1:151020216-151024462:+,chromosome_1_open_reading_frame_56,SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+	DMS79_LUNG	0.16	0.86	0.2471	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	TUBA1B--RP11-355I22.8	6	0	TUBA1B	3926	chr12:49522255:-	RP11-355I22.8	7987	chr14:62618606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.078	0	NUCLCLUST,TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,RP11-355I22.8->chr14:62617374-62618976:-	DMS79_LUNG	1	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	TUBA1B--RP11-355I22.8	6	0	TUBA1B	3837	chr12:49522344:-	RP11-355I22.8	7987	chr14:62618606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.078	0	NUCLCLUST,TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,RP11-355I22.8->chr14:62617374-62618976:-	DMS79_LUNG	1	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	HAS3--TANGO6	3	5	HAS3	4768	chr16:69143934:+	TANGO6	38919	chr16:69117388:+	ONLY_REF_SPLICE	YES	60	14	0.12	0.36	0.039	0.065	LOCAL_REARRANGEMENT:+:[20384],HAS3->chr16:69139467-69152622:+,hyaluronan_synthase_3,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	DMS79_LUNG	0.12	0.36	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	OSBPL2--RP4-530I15.6	2	6	OSBPL2	13696	chr20:60861767:+	RP4-530I15.6	25691	chr20:49276403:+	ONLY_REF_SPLICE	YES	106	3	0.07	0.73	0.026	0.078	OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,RP4-530I15.6->chr20:49262008-49278812:+	DMS79_LUNG	0.07	0.73	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	RP11-762I7.5--RP11-620J15.2	3	0	RP11-762I7.5	6477	chr12:56211450:-	RP11-620J15.2	25975	chr12:58265871:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	RP11-762I7.5->chr12:56151059-56221330:-,RP11-620J15.2->chr12:58263618-58290265:-	DMS79_LUNG	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	SHANK2--RP11-9B6.1	3	0	SHANK2	23844	chr11:70742606:-	RP11-9B6.1	63706	chr4:93222039:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,RP11-9B6.1->chr4:93218402-93225329:-	DMS79_LUNG	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	AP000487.5--UBR1	2	0	AP000487.5	1391	chr11:70244204:-	UBR1	33757	chr15:43317627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	AP000487.5->chr11:70218352-70244594:-,UBR1->chr15:43235095-43398311:-,ubiquitin_protein_ligase_E3_component_n-recognin_1	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	B3GAT1--SLC41A2	2	0	B3GAT1	1112	chr11:134281701:-	SLC41A2	29039	chr12:105280217:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	B3GAT1->beta-1,3-glucuronyltransferase_1,chr11:134248398-134281812:-,SLC41A2->chr12:105196331-105352522:-,solute_carrier_family_41_member_2	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	CBX5--COPZ1	2	0	CBX5	5659	chr12:54645825:-	COPZ1	27861	chr12:54739244:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_INVERSION:-:+:[21100],CBX5->chr12:54624724-54673886:-,chromobox_5,COPZ1->chr12:54694986-54745633:+,coatomer_protein_complex_subunit_zeta_1	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	CTB-55O6.12--GPCPD1	2	0	CTB-55O6.12	2373	chr19:14266291:+	GPCPD1	24672	chr20:5545724:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CTB-55O6.12->chr19:14247991-14282079:+,GPCPD1->chr20:5525085-5591672:-,glycerophosphocholine_phosphodiesterase_1	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	CTD-2006C1.2--RFX3	2	0	CTD-2006C1.2	3469	chr19:12112637:+	RFX3	22680	chr9:3395596:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CTD-2006C1.2->chr19:12098432-12157090:+,RFX3->chr9:3218297-3526004:-,regulatory_factor_X3	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	CTD-2561J22.5--RTF1	2	0	CTD-2561J22.5	1165	chr19:21646546:-	RTF1	16740	chr15:41745099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CTD-2561J22.5->chr19:21627043-21646710:-,RTF1->RTF1_homolog,_Paf1/RNA_polymerase_II_complex_component,chr15:41700606-41775761:+	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	FAM155A--CORO2B	2	0	FAM155A	2054	chr13:108518030:-	CORO2B	14418	chr15:68987479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	FAM155A->chr13:107820883-108519083:-,family_with_sequence_similarity_155_member_A,CORO2B->Oncogene{Bushman},chr15:68871308-69020145:+,coronin_2B	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	RP11-112J1.2--DAAM1	2	0	RP11-112J1.2	5913	chr14:59377060:+	DAAM1	13257	chr14:59730159:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RP11-112J1.2->chr14:59294952-59484046:+,DAAM1->chr14:59655364-59838123:+,dishevelled_associated_activator_of_morphogenesis_1	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	RP11-281A20.1--FGF14	2	0	RP11-281A20.1	3336	chr9:120632322:-	FGF14	10123	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RP11-281A20.1->chr9:120602600-120659534:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	SSBP1--MGAM	2	0	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	DMS79_LUNG	1	1	0.026	TRUE	0	1	0	7	1	TRUE	ACH-000703
DMS79_LUNG	ZC3H8--NFYB	2	0	ZC3H8	2167	chr2:113011547:-	NFYB	21952	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ZC3H8->Oncogene{Bushman},chr2:112969102-113012713:-,zinc_finger_CCCH-type_containing_8,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	ZNF250--MSTO1	2	0	ZNF250	5808	chr8:146112225:-	MSTO1	25374	chr1:155583850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,MSTO1->chr1:155579979-155718153:+,misato_1,_mitochondrial_distribution_and_morphology_regulator	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	RP11-112J1.2--DAAM1	1	3	RP11-112J1.2	8062	chr14:59475868:+	DAAM1	13257	chr14:59730159:+	ONLY_REF_SPLICE	YES	0	33	1	0.11	0.013	0.039	RP11-112J1.2->chr14:59294952-59484046:+,DAAM1->chr14:59655364-59838123:+,dishevelled_associated_activator_of_morphogenesis_1	DMS79_LUNG	0.11	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	TMEM132E--CCL8	1	1	TMEM132E	1395	chr17:32908162:+	CCL8	16875	chr17:32647288:+	ONLY_REF_SPLICE	YES	8	4	0.2	0.33	0.013	0.013	TMEM132E->chr17:32907768-32966337:+,transmembrane_protein_132E,CCL8->C-C_motif_chemokine_ligand_8,chr17:32646055-32648421:+	DMS79_LUNG	0.2	0.33	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
SKNDZ_AUTONOMIC_GANGLIA	METAP1D--FARSB	223	6	METAP1D	1427	chr2:172864916:+	FARSB	34788	chr2:223464802:-	ONLY_REF_SPLICE	YES	0	107	1	0.68	2.223	0.0598	METAP1D->chr2:172864490-172947158:+,methionyl_aminopeptidase_type_1D_(mitochondrial),FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit	SKNDZ_AUTONOMIC_GANGLIA	0.68	1	2.2828	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ING5--AC010884.1	181	1	ING5	1068	chr2:242641517:+	AC010884.1	20258	chr2:105561535:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.8043	0.01	ING5->chr2:242641450-242668893:+,inhibitor_of_growth_family_member_5,AC010884.1->chr2:105552869-105654954:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	1.8143	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	OLA1--LRRFIP1	82	15	OLA1	7507	chr2:175006553:-	LRRFIP1	57104	chr2:238688065:+	ONLY_REF_SPLICE	YES	152	30	0.39	0.76	0.8174	0.1495	{Klijn_CCL:Brain=1},OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-,LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1	SKNDZ_AUTONOMIC_GANGLIA	0.39	0.76	0.9669	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	CTSC--MAML2	51	10	CTSC	12860	chr11:88042331:-	MAML2	26089	chr11:95826681:-	ONLY_REF_SPLICE	YES	147	2	0.29	0.97	0.5084	0.0997	CTSC->cathepsin_C,chr11:88026760-88070955:-,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	SKNDZ_AUTONOMIC_GANGLIA	0.29	0.97	0.6081	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NBAS--AC008278.2	28	31	NBAS	25384	chr2:15557651:-	AC008278.2	62844	chr2:15704226:+	INCL_NON_REF_SPLICE	YES	23	0	0.72	1	0.2791	0.309	LOCAL_INVERSION:-:+:[2840],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC008278.2->chr2:15704294-15713992:+	SKNDZ_AUTONOMIC_GANGLIA	0.72	1	0.5881	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	THADA--DYTN	30	2	THADA	34712	chr2:43712373:-	DYTN	70415	chr2:207530753:-	ONLY_REF_SPLICE	YES	6	0	0.84	1	0.2991	0.0199	{Klijn_CCL:Brain=1},THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-,DYTN->chr2:207516345-207583120:-,dystrotelin	SKNDZ_AUTONOMIC_GANGLIA	0.84	1	0.319	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	USP34--RP11-444A22.1	26	12	USP34	5010	chr2:61621988:-	RP11-444A22.1	78618	chr2:59739340:-	ONLY_REF_SPLICE	YES	22	0	0.63	1	0.2592	0.1196	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,RP11-444A22.1->chr2:59445815-60327335:-	SKNDZ_AUTONOMIC_GANGLIA	0.63	1	0.3788	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	TIMELESS--TBC1D30	26	3	TIMELESS	1094	chr12:56843094:-	TBC1D30	20390	chr12:65179661:+	ONLY_REF_SPLICE	YES	29	0	0.5	1	0.2592	0.0299	TIMELESS->chr12:56810903-56843187:-,timeless_circadian_clock,TBC1D30->TBC1_domain_family_member_30,chr12:65174589-65274812:+	SKNDZ_AUTONOMIC_GANGLIA	0.5	1	0.2891	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	OLA1--LRRFIP1	20	2	OLA1	7507	chr2:175006553:-	LRRFIP1	58998	chr2:238722235:+	ONLY_REF_SPLICE	YES	152	0	0.13	1	0.1994	0.0199	{Klijn_CCL:Brain=1},OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-,LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1	SKNDZ_AUTONOMIC_GANGLIA	0.13	1	0.2193	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	DBI--SPAG16	18	5	DBI	2385	chr2:120125881:+	SPAG16	30245	chr2:214878675:+	ONLY_REF_SPLICE	YES	610	0	0.04	1	0.1794	0.0498	DBI->chr2:120124497-120130126:+,diazepam_binding_inhibitor_(GABA_receptor_modulator,_acyl-CoA_binding_protein),SPAG16->chr2:214149113-215275225:+,sperm_associated_antigen_16	SKNDZ_AUTONOMIC_GANGLIA	0.04	1	0.2292	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NBAS--AC130710.1	12	8	NBAS	29878	chr2:15534351:-	AC130710.1	64163	chr2:16213426:+	ONLY_REF_SPLICE	YES	19	6	0.51	0.77	0.1196	0.0797	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC130710.1->chr2:16190549-16225923:+	SKNDZ_AUTONOMIC_GANGLIA	0.51	0.77	0.1993	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	AC027612.6--RPS27A	13	3	AC027612.6	3373	chr2:91843394:-	RPS27A	15069	chr2:55459944:+	ONLY_REF_SPLICE	YES	170	38	0.09	0.3	0.1296	0.0299	AC027612.6->chr2:91805186-91847998:-,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	SKNDZ_AUTONOMIC_GANGLIA	0.09	0.3	0.1595	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	DCUN1D1--UTP6	11	4	DCUN1D1	6827	chr3:182679014:-	UTP6	39892	chr17:30190535:-	ONLY_REF_SPLICE	YES	54	196	0.22	0.07	0.1097	0.0399	{Klijn_CCL:Brain=1},DCUN1D1->chr3:182655862-182703741:-,defective_in_cullin_neddylation_1_domain_containing_1,UTP6->UTP6,_small_subunit_processome_component,chr17:30187923-30228784:-	SKNDZ_AUTONOMIC_GANGLIA	0.07	0.22	0.1496	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NBAS--AC008278.2	7	10	NBAS	25384	chr2:15557651:-	AC008278.2	63807	chr2:15705189:+	ONLY_REF_SPLICE	YES	23	15	0.42	0.53	0.0698	0.0997	LOCAL_INVERSION:-:+:[2840],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC008278.2->chr2:15704294-15713992:+	SKNDZ_AUTONOMIC_GANGLIA	0.42	0.53	0.1695	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	BAZ2B--MYT1L	6	4	BAZ2B	6250	chr2:160335086:-	MYT1L	88401	chr2:1889266:-	ONLY_REF_SPLICE	YES	14	1	0.42	0.91	0.0598	0.0399	BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,MYT1L->chr2:1792885-2335032:-,myelin_transcription_factor_1_like	SKNDZ_AUTONOMIC_GANGLIA	0.42	0.91	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	CSRNP3--TUBA3E	6	4	CSRNP3	8301	chr2:166451723:+	TUBA3E	26670	chr2:130953944:-	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0598	0.0399	CSRNP3->chr2:166326157-166545917:+,cysteine_and_serine_rich_nuclear_protein_3,TUBA3E->chr2:130949318-130956034:-,tubulin_alpha_3e	SKNDZ_AUTONOMIC_GANGLIA	0.77	1	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ANKRD11--RNF166	6	0	ANKRD11	4629	chr16:89484692:-	RNF166	43906	chr16:88765493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0598	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,RNF166->chr16:88762903-88772829:-,ring_finger_protein_166	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0598	TRUE	1	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ANKRD11--SNAI3	6	0	ANKRD11	4629	chr16:89484692:-	SNAI3	39408	chr16:88748122:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0598	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,SNAI3->chr16:88744090-88752901:-,snail_family_zinc_finger_3	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	PPP2R1A--ARHGEF1	6	0	PPP2R1A	10964	chr19:52719916:+	ARHGEF1	43669	chr19:42433807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0598	0	PPP2R1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:52693292-52730687:+,protein_phosphatase_2_regulatory_subunit_A,_alpha,ARHGEF1->Rho_guanine_nucleotide_exchange_factor_1,chr19:42387228-42434302:+	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	BAZ2B--MYT1L	5	3	BAZ2B	6250	chr2:160335086:-	MYT1L	90928	chr2:1855475:-	ONLY_REF_SPLICE	YES	14	0	0.36	1	0.0498	0.0299	BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,MYT1L->chr2:1792885-2335032:-,myelin_transcription_factor_1_like	SKNDZ_AUTONOMIC_GANGLIA	0.36	1	0.0797	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	C2orf43--AC007092.1	5	3	C2orf43	5940	chr2:20974570:-	AC007092.1	19245	chr2:58883785:+	ONLY_REF_SPLICE	YES	49	0	0.14	1	0.0498	0.0299	C2orf43->chr2:20883788-21022882:-,AC007092.1->chr2:58654934-59290901:+	SKNDZ_AUTONOMIC_GANGLIA	0.14	1	0.0797	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	MIER1--IL23R	5	3	MIER1	18238	chr1:67442405:+	IL23R	30965	chr1:67648519:+	ONLY_REF_SPLICE	YES	34	0	0.19	1	0.0498	0.0299	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,IL23R->chr1:67632083-67725662:+,interleukin_23_receptor	SKNDZ_AUTONOMIC_GANGLIA	0.19	1	0.0797	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	MEMO1--TRIB2	5	2	MEMO1	2044	chr2:32235256:-	TRIB2	23294	chr2:12863386:+	ONLY_REF_SPLICE	YES	32	125	0.18	0.05	0.0498	0.0199	MEMO1->chr2:32090129-32236299:-,mediator_of_cell_motility_1,TRIB2->chr2:12857015-12882860:+,tribbles_pseudokinase_2	SKNDZ_AUTONOMIC_GANGLIA	0.05	0.18	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	METAP1D--FARSB	4	6	METAP1D	1477	chr2:172864966:+	FARSB	34788	chr2:223464802:-	INCL_NON_REF_SPLICE	YES	2	107	0.83	0.09	0.0399	0.0598	METAP1D->chr2:172864490-172947158:+,methionyl_aminopeptidase_type_1D_(mitochondrial),FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit	SKNDZ_AUTONOMIC_GANGLIA	0.09	0.83	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NBAS--AC130710.1	3	9	NBAS	29878	chr2:15534351:-	AC130710.1	63116	chr2:16190753:+	INCL_NON_REF_SPLICE	YES	19	8	0.39	0.6	0.0299	0.0897	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC130710.1->chr2:16190549-16225923:+	SKNDZ_AUTONOMIC_GANGLIA	0.39	0.6	0.1196	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	AC027612.6--RPS27A	4	3	AC027612.6	3821	chr2:91842946:-	RPS27A	15069	chr2:55459944:+	ONLY_REF_SPLICE	YES	149	38	0.04	0.16	0.0399	0.0299	AC027612.6->chr2:91805186-91847998:-,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	SKNDZ_AUTONOMIC_GANGLIA	0.04	0.16	0.0698	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NBAS--AC008278.2	4	1	NBAS	25384	chr2:15557651:-	AC008278.2	64941	chr2:15713608:+	ONLY_REF_SPLICE	YES	23	58	0.18	0.08	0.0399	0.01	LOCAL_INVERSION:-:+:[2840],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC008278.2->chr2:15704294-15713992:+	SKNDZ_AUTONOMIC_GANGLIA	0.08	0.18	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	METAP1D--FARSB	2	6	METAP1D	2496	chr2:172886771:+	FARSB	34788	chr2:223464802:-	ONLY_REF_SPLICE	YES	2	107	0.8	0.07	0.0199	0.0598	METAP1D->chr2:172864490-172947158:+,methionyl_aminopeptidase_type_1D_(mitochondrial),FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit	SKNDZ_AUTONOMIC_GANGLIA	0.07	0.8	0.0797	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	IPP--YIPF1	3	1	IPP	3828	chr1:46206573:-	YIPF1	25701	chr1:54332597:-	ONLY_REF_SPLICE	YES	6	35	0.4	0.1	0.0299	0.01	IPP->chr1:46159996-46216322:-,intracisternal_A_particle-promoted_polypeptide,YIPF1->Yip1_domain_family_member_1,chr1:54317392-54356407:-	SKNDZ_AUTONOMIC_GANGLIA	0.1	0.4	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NBAS--AC130710.1	3	1	NBAS	29878	chr2:15534351:-	AC130710.1	66233	chr2:16221020:+	ONLY_REF_SPLICE	YES	19	17	0.17	0.19	0.0299	0.01	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC130710.1->chr2:16190549-16225923:+	SKNDZ_AUTONOMIC_GANGLIA	0.17	0.19	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ARF3--STAC3	3	0	ARF3	1242	chr12:49351093:-	STAC3	19025	chr12:57638748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,STAC3->SH3_and_cysteine_rich_domain_3,chr12:57637236-57644976:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0299	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	C2orf43--AC007092.1	2	4	C2orf43	7175	chr2:20939731:-	AC007092.1	19245	chr2:58883785:+	ONLY_REF_SPLICE	YES	37	0	0.14	1	0.0199	0.0399	C2orf43->chr2:20883788-21022882:-,AC007092.1->chr2:58654934-59290901:+	SKNDZ_AUTONOMIC_GANGLIA	0.14	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	FAM208B--GDI2	3	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0299	TRUE	0	0	0	11	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	PPHLN1--RP11-551L14.1	3	0	PPHLN1	1215	chr12:42632463:+	RP11-551L14.1	46986	chr12:31289660:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	PPHLN1->chr12:42632249-42853517:+,periphilin_1,RP11-551L14.1->chr12:31264586-31359088:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0299	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	PPHLN1--RP11-551L14.1	2	3	PPHLN1	1215	chr12:42632463:+	RP11-551L14.1	44872	chr12:31292177:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0199	0.0299	PPHLN1->chr12:42632249-42853517:+,periphilin_1,RP11-551L14.1->chr12:31264586-31359088:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ARF3--STAC3	2	0	ARF3	2454	chr12:49349881:-	STAC3	17681	chr12:57640684:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,STAC3->SH3_and_cysteine_rich_domain_3,chr12:57637236-57644976:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	C21orf91--EML5	2	0	C21orf91	2195	chr21:19190509:-	EML5	57419	chr14:89087270:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	C21orf91->chr21:19161284-19191703:-,chromosome_21_open_reading_frame_91,EML5->chr14:89078775-89259096:-,echinoderm_microtubule_associated_protein_like_5	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	CPSF6--PGBD2	2	0	CPSF6	11046	chr12:69656342:+	PGBD2	23586	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	7	0	6	2	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	LIMS3L--DDX1	2	0	LIMS3L	5464	chr2:111214607:-	DDX1	30996	chr2:15743316:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LIMS3L->chr2:111160511-111230652:-,chr2:111222628-111230511:-,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	SPECC1L--AP000347.4	2	0	SPECC1L	3460	chr22:24698352:+	AP000347.4	29234	chr22:23981129:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,AP000347.4->chr22:23980679-23982949:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	SUGT1--SLCO3A1	2	0	SUGT1	10914	chr13:53250455:+	SLCO3A1	49652	chr15:92705986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SUGT1->SGT1_homolog,_MIS12_kinetochore_complex_assembly_cochaperone,chr13:53226844-53275044:+,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	TEAD1--SOX6	2	0	TEAD1	17133	chr11:12951873:+	SOX6	33154	chr11:16633807:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,SOX6->SRY-box_6,chr11:15987995-16761138:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	USP34--RP11-444A22.1	1	2	USP34	5010	chr2:61621988:-	RP11-444A22.1	79815	chr2:59445859:-	ONLY_REF_SPLICE	YES	22	0	0.12	1	0.01	0.0199	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,RP11-444A22.1->chr2:59445815-60327335:-	SKNDZ_AUTONOMIC_GANGLIA	0.12	1	0.0299	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	CELF2--CNTN5	1	1	CELF2	9538	chr10:11312787:+	CNTN5	29902	chr11:99196077:+	ONLY_REF_SPLICE	YES	1	17	0.67	0.11	0.01	0.01	CELF2->CUGBP,_Elav-like_family_member_2,chr10:11047259-11378674:+,CNTN5->chr11:98891683-100229616:+,contactin_5	SKNDZ_AUTONOMIC_GANGLIA	0.11	0.67	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000366
NCIH2110_LUNG	SAE1--RPL13A	819	175	SAE1	3734	chr19:47634285:+	RPL13A	23025	chr19:49994682:+	ONLY_REF_SPLICE	YES	147	2114	0.87	0.32	7.3376	1.5679	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	NCIH2110_LUNG	0.32	0.87	8.9055	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	PLAUR--RP11-115A15.1	238	42	PLAUR	4732	chr19:44169468:-	RP11-115A15.1	16448	chr1:81050048:-	ONLY_REF_SPLICE	YES	297	0	0.49	1	2.1323	0.3763	PLAUR->Oncogene{Bushman},chr19:44150247-44174699:-,plasminogen_activator,_urokinase_receptor,RP11-115A15.1->chr1:81000663-81050048:-	NCIH2110_LUNG	0.49	1	2.5086	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	PIK3R3--AP2A1	189	36	PIK3R3	3451	chr1:46597519:-	AP2A1	22290	chr19:50285014:+	ONLY_REF_SPLICE	YES	32	79	0.88	0.74	1.6933	0.3225	{Klijn_CCL:Lung=1},PIK3R3->chr1:46505812-46642160:-,phosphoinositide-3-kinase_regulatory_subunit_3,AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+	NCIH2110_LUNG	0.74	0.88	2.0158	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	ZNF331--PEG3	118	50	ZNF331	7495	chr19:54042536:+	PEG3	22076	chr19:57347472:-	ONLY_REF_SPLICE	YES	27	0	0.86	1	1.0572	0.448	HGNC_GENEFAM,PROTCLUST,ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,PEG3->Oncogene{Bushman},chr19:57321445-57352096:-,paternally_expressed_3	NCIH2110_LUNG	0.86	1	1.5052	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	SAE1--RPL13A	59	191	SAE1	3818	chr19:47634369:+	RPL13A	23025	chr19:49994682:+	ONLY_REF_SPLICE	YES	194	2114	0.56	0.11	0.5286	1.7112	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	NCIH2110_LUNG	0.11	0.56	2.2398	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	GPBP1L1--CTD-3187F8.14	92	17	GPBP1L1	3538	chr1:46151248:-	CTD-3187F8.14	24898	chr19:51668530:-	ONLY_REF_SPLICE	YES	94	0	0.54	1	0.8242	0.1523	GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,CTD-3187F8.14->chr19:51656180-51685222:-	NCIH2110_LUNG	0.54	1	0.9765	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	HNRNPR--TXLNA	86	30	HNRNPR	5264	chr1:23660011:-	TXLNA	26050	chr1:32653555:+	ONLY_REF_SPLICE	YES	200	96	0.37	0.55	0.7705	0.2688	{Klijn_CCL:Lung=1},HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TXLNA->chr1:32645287-32663886:+,taxilin_alpha	NCIH2110_LUNG	0.37	0.55	1.0393	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RAB4B--ACTN4	73	49	RAB4B	1176	chr19:41284296:+	ACTN4	14370	chr19:39191240:+	ONLY_REF_SPLICE	YES	112	698	0.52	0.15	0.654	0.439	RAB4B->RAB4B,_member_RAS_oncogene_family,chr19:41284121-41302847:+,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	NCIH2110_LUNG	0.15	0.52	1.093	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	ARHGAP29--COL24A1	55	13	ARHGAP29	19169	chr1:94654393:-	COL24A1	42130	chr1:86591897:-	ONLY_REF_SPLICE	YES	53	0	0.56	1	0.4928	0.1165	{Klijn_CCL:Lung=1},ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-,COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1	NCIH2110_LUNG	0.56	1	0.6093	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RAB13--AC068279.3	50	7	RAB13	5199	chr1:153954497:-	AC068279.3	8899	chr2:87607561:-	INCL_NON_REF_SPLICE	YES	292	0	0.16	1	0.448	0.0627	RAB13->RAB13,_member_RAS_oncogene_family,chr1:153954127-153958834:-,AC068279.3->chr2:87607003-87607890:-	NCIH2110_LUNG	0.16	1	0.5107	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RP4-594I10.3--MECR	39	12	RP4-594I10.3	2370	chr1:24878379:-	MECR	17157	chr1:29528557:-	ONLY_REF_SPLICE	YES	0	27	1	0.65	0.3494	0.1075	RP4-594I10.3->chr1:24865292-24882515:-,MECR->chr1:29519385-29557454:-,mitochondrial_trans-2-enoyl-CoA_reductase	NCIH2110_LUNG	0.65	1	0.4569	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	HNRNPR--TXLNA	32	35	HNRNPR	5264	chr1:23660011:-	TXLNA	24958	chr1:32650126:+	ONLY_REF_SPLICE	YES	200	87	0.25	0.44	0.2867	0.3136	{Klijn_CCL:Lung=1},HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TXLNA->chr1:32645287-32663886:+,taxilin_alpha	NCIH2110_LUNG	0.25	0.44	0.6003	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	BCAR3--STRN4	33	7	BCAR3	8673	chr1:94140170:-	STRN4	32862	chr19:47242145:-	ONLY_REF_SPLICE	YES	37	30	0.52	0.57	0.2957	0.0627	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,STRN4->chr19:47222764-47250251:-,striatin_4	NCIH2110_LUNG	0.52	0.57	0.3584	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	STK11--HDAC4	33	6	STK11	3716	chr19:1207202:+	HDAC4	31105	chr2:240085619:-	ONLY_REF_SPLICE	YES	20	11	0.66	0.78	0.2957	0.0538	STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11,HDAC4->Oncogene{Bushman},chr2:239969864-240323348:-,histone_deacetylase_4	NCIH2110_LUNG	0.66	0.78	0.3495	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	TBCA--DEDD2	31	11	TBCA	2304	chr5:77072029:-	DEDD2	16097	chr19:42719404:-	ONLY_REF_SPLICE	YES	193	21	0.18	0.67	0.2777	0.0986	TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,DEDD2->chr19:42702750-42724292:-,death_effector_domain_containing_2	NCIH2110_LUNG	0.18	0.67	0.3763	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	LENG8--ZNF573	29	1	LENG8	1420	chr19:54960484:+	ZNF573	16690	chr19:38307860:-	INCL_NON_REF_SPLICE	YES	26	0	0.54	1	0.2598	0.009	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573	NCIH2110_LUNG	0.54	1	0.2688	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	NFIA--SCP2	24	6	NFIA	7204	chr1:61554352:+	SCP2	38904	chr1:53440441:+	ONLY_REF_SPLICE	YES	5	24	0.86	0.56	0.215	0.0538	{Klijn_CCL:Lung=1},NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A,SCP2->chr1:53392901-53517375:+,sterol_carrier_protein_2	NCIH2110_LUNG	0.56	0.86	0.2688	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	GPBP1L1--CTD-3187F8.14	25	0	GPBP1L1	2121	chr1:46152665:-	CTD-3187F8.14	24898	chr19:51668530:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.224	0	GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,CTD-3187F8.14->chr19:51656180-51685222:-	NCIH2110_LUNG	1	1	0.224	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	HNRNPR--TXLNA	18	10	HNRNPR	4150	chr1:23664247:-	TXLNA	24958	chr1:32650126:+	ONLY_REF_SPLICE	YES	270	87	0.09	0.24	0.1613	0.0896	{Klijn_CCL:Lung=1},HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TXLNA->chr1:32645287-32663886:+,taxilin_alpha	NCIH2110_LUNG	0.09	0.24	0.2509	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	HNRNPR--TXLNA	18	9	HNRNPR	4150	chr1:23664247:-	TXLNA	26050	chr1:32653555:+	ONLY_REF_SPLICE	YES	270	96	0.09	0.22	0.1613	0.0806	{Klijn_CCL:Lung=1},HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TXLNA->chr1:32645287-32663886:+,taxilin_alpha	NCIH2110_LUNG	0.09	0.22	0.2419	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	LENG8--ZNF573	18	1	LENG8	1424	chr19:54960488:+	ZNF573	16690	chr19:38307860:-	INCL_NON_REF_SPLICE	YES	62	0	0.23	1	0.1613	0.009	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573	NCIH2110_LUNG	0.23	1	0.1703	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	FARSA--SMARCA4	16	5	FARSA	1488	chr19:13044364:-	SMARCA4	53451	chr19:11175869:+	ONLY_REF_SPLICE	YES	180	1	0.1	0.95	0.1433	0.0448	FARSA->chr19:13033293-13044851:-,phenylalanyl-tRNA_synthetase_alpha_subunit,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	NCIH2110_LUNG	0.1	0.95	0.1881	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	IMPACT--RP11-161I6.2	15	1	IMPACT	9847	chr18:22028147:+	RP11-161I6.2	25907	chr18:1906647:-	ONLY_REF_SPLICE	YES	38	0	0.3	1	0.1344	0.009	IMPACT->chr18:22006580-22033499:+,impact_RWD_domain_protein,RP11-161I6.2->chr18:1883525-2240847:-	NCIH2110_LUNG	0.3	1	0.1434	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	NRD1--CASZ1	13	2	NRD1	1531	chr1:52343947:-	CASZ1	38980	chr1:10765601:-	ONLY_REF_SPLICE	YES	105	2	0.12	0.88	0.1165	0.0179	NRD1->chr1:52254863-52344477:-,CASZ1->castor_zinc_finger_1,chr1:10696661-10856707:-	NCIH2110_LUNG	0.12	0.88	0.1344	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	BCKDHA--SIPA1L3	12	5	BCKDHA	2686	chr19:41903840:+	SIPA1L3	35073	chr19:38643480:+	ONLY_REF_SPLICE	YES	46	25	0.27	0.4	0.1075	0.0448	BCKDHA->branched_chain_keto_acid_dehydrogenase_E1,_alpha_polypeptide,chr19:41884215-41930910:+,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	NCIH2110_LUNG	0.27	0.4	0.1523	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RAB4B--ACTN4	1	49	RAB4B	2884	chr19:41286004:+	ACTN4	14370	chr19:39191240:+	ONLY_REF_SPLICE	YES	84	698	0.37	0.07	0.009	0.439	RAB4B->RAB4B,_member_RAS_oncogene_family,chr19:41284121-41302847:+,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	NCIH2110_LUNG	0.07	0.37	0.448	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	GPBP1L1--CTD-3187F8.14	12	2	GPBP1L1	2702	chr1:46152084:-	CTD-3187F8.14	24898	chr19:51668530:-	ONLY_REF_SPLICE	YES	50	0	0.22	1	0.1075	0.0179	GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,CTD-3187F8.14->chr19:51656180-51685222:-	NCIH2110_LUNG	0.22	1	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	TCEANC2--AP2A1	12	1	TCEANC2	3080	chr1:54534570:+	AP2A1	15435	chr19:50285014:+	ONLY_REF_SPLICE	YES	9	79	0.59	0.14	0.1075	0.009	{Klijn_CCL:Lung=1},TCEANC2->chr1:54519260-54578192:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing_2,AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+	NCIH2110_LUNG	0.14	0.59	0.1165	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	VANGL1--TCEANC2	8	0	VANGL1	5703	chr1:116206889:+	TCEANC2	24685	chr1:54554270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0717	0	VANGL1->VANGL_planar_cell_polarity_protein_1,chr1:116184574-116240845:+,TCEANC2->chr1:54519260-54578192:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing_2	NCIH2110_LUNG	1	1	0.0717	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	ARHGEF16--RP11-470E16.1	6	0	ARHGEF16	5326	chr1:3383901:+	RP11-470E16.1	22524	chr1:59599002:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	ARHGEF16->Rho_guanine_nucleotide_exchange_factor_16,chr1:3370990-3397677:+,RP11-470E16.1->chr1:59597608-59664293:-	NCIH2110_LUNG	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RP11-57H12.6--RP11-776H12.1	5	4	RP11-57H12.6	6653	chr1:95639445:+	RP11-776H12.1	15423	chr1:61065942:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0.0358	RP11-57H12.6->chr1:95583479-95712781:+,RP11-776H12.1->chr1:61005921-61106163:-	NCIH2110_LUNG	1	1	0.0806	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	SERINC2--CROCCP3	5	3	SERINC2	5568	chr1:31888754:+	CROCCP3	22046	chr1:16813156:-	ONLY_REF_SPLICE	YES	4	1	0.67	0.89	0.0448	0.0269	SERINC2->chr1:31882412-31907525:+,serine_incorporator_2,CROCCP3->chr1:16793931-16825752:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_3	NCIH2110_LUNG	0.67	0.89	0.0717	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	ZNF331--PEG3	1	16	ZNF331	7495	chr19:54042536:+	PEG3	24637	chr19:57337831:-	ONLY_REF_SPLICE	YES	27	8	0.39	0.68	0.009	0.1433	HGNC_GENEFAM,PROTCLUST,ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,PEG3->Oncogene{Bushman},chr19:57321445-57352096:-,paternally_expressed_3	NCIH2110_LUNG	0.39	0.68	0.1523	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RAD54L--TTC34	4	1	RAD54L	1721	chr1:46714080:+	TTC34	23464	chr1:2577002:-	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0358	0.009	RAD54L->RAD54-like_(S._cerevisiae),chr1:46713360-46744145:+,TTC34->chr1:2567415-2718286:-,tetratricopeptide_repeat_domain_34	NCIH2110_LUNG	0.26	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	ZNF331--PEG3	1	13	ZNF331	7495	chr19:54042536:+	PEG3	26292	chr19:57335795:-	ONLY_REF_SPLICE	NO	27	22	0.34	0.39	0.009	0.1165	HGNC_GENEFAM,PROTCLUST,ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,PEG3->Oncogene{Bushman},chr19:57321445-57352096:-,paternally_expressed_3	NCIH2110_LUNG	0.34	0.39	0.1255	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	BCAR3--STRN4	4	0	BCAR3	8673	chr1:94140170:-	STRN4	39091	chr19:47234130:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,STRN4->chr19:47222764-47250251:-,striatin_4	NCIH2110_LUNG	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	DDAH1--NFIA	4	0	DDAH1	10736	chr1:85930426:-	NFIA	32136	chr1:61743192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A	NCIH2110_LUNG	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RP11-57H12.6--RP11-776H12.1	3	4	RP11-57H12.6	6653	chr1:95639445:+	RP11-776H12.1	15443	chr1:61065922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0.0358	RP11-57H12.6->chr1:95583479-95712781:+,RP11-776H12.1->chr1:61005921-61106163:-	NCIH2110_LUNG	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	GPBP1L1--CTD-3187F8.14	3	0	GPBP1L1	1131	chr1:46153655:-	CTD-3187F8.14	24898	chr19:51668530:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,CTD-3187F8.14->chr19:51656180-51685222:-	NCIH2110_LUNG	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	SERINC2--CROCCP3	3	0	SERINC2	3060	chr1:31886151:+	CROCCP3	22046	chr1:16813156:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	SERINC2->chr1:31882412-31907525:+,serine_incorporator_2,CROCCP3->chr1:16793931-16825752:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_3	NCIH2110_LUNG	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	FGGY--SLC1A7	2	3	FGGY	6649	chr1:59787422:+	SLC1A7	38368	chr1:53600101:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0179	0.0269	{Klijn_CCL:Lung=1},FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+,SLC1A7->chr1:53552855-53608289:-,solute_carrier_family_1_member_7	NCIH2110_LUNG	0.45	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RP4-594I10.3--MECR	2	2	RP4-594I10.3	2370	chr1:24878379:-	MECR	19879	chr1:29522770:-	ONLY_REF_SPLICE	YES	0	41	1	0.09	0.0179	0.0179	RP4-594I10.3->chr1:24865292-24882515:-,MECR->chr1:29519385-29557454:-,mitochondrial_trans-2-enoyl-CoA_reductase	NCIH2110_LUNG	0.09	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	ACTN4--CTD-2126E3.3	2	0	ACTN4	1259	chr19:39138547:+	CTD-2126E3.3	28041	chr19:50548044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,CTD-2126E3.3->chr19:50546453-50554319:-	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	ARHGAP26--NR3C1	2	0	ARHGAP26	30126	chr5:142526946:+	NR3C1	59759	chr5:142693733:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=4;pct=0.05%;dist=Lung=2,Adipose_-_Subcutaneous=1,Whole_Blood=1},LOCAL_INVERSION:+:-:[48920],ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,NR3C1->chr5:142657496-142815077:-,nuclear_receptor_subfamily_3_group_C_member_1	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	ARHGAP35--LPPR5	2	0	ARHGAP35	5826	chr19:47440665:+	LPPR5	22776	chr1:99422297:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,LPPR5->chr1:99355806-99470588:-	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	BCAR3--STRN4	2	0	BCAR3	6854	chr1:94147154:-	STRN4	32862	chr19:47242145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,STRN4->chr19:47222764-47250251:-,striatin_4	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	CHD8--TRAV21	2	0	CHD8	1095	chr14:21924191:-	TRAV21	35936	chr14:22521026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,TRAV21->T_cell_receptor_alpha_variable_21,chr14:22520773-22521315:+	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	CHD8--TRAV21	2	0	CHD8	3283	chr14:21905353:-	TRAV21	35936	chr14:22521026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,TRAV21->T_cell_receptor_alpha_variable_21,chr14:22520773-22521315:+	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	LINC01059--U2AF1	2	0	LINC01059	1432	chr11:123325537:+	U2AF1	17887	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	LINC01059->chr11:123325106-123331118:+,long_intergenic_non-protein_coding_RNA_1059,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	NDC1--FOXM1	2	0	NDC1	12822	chr1:54266366:-	FOXM1	35463	chr12:2968829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NDC1->NDC1_transmembrane_nucleoporin,chr1:54231133-54304533:-,FOXM1->Oncogene{Bushman},chr12:2966847-2986206:-,forkhead_box_M1	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RCC1--LRBA	2	0	RCC1	2175	chr1:28834672:+	LRBA	73292	chr4:151336742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	TSPAN1--TMEM59	2	0	TSPAN1	3414	chr1:46646836:+	TMEM59	12756	chr1:54513045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	{Klijn_CCL:Lung=1},TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1,TMEM59->chr1:54497347-54519177:-,transmembrane_protein_59	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RP11-57H12.6--RP11-776H12.1	1	2	RP11-57H12.6	6653	chr1:95639445:+	RP11-776H12.1	16567	chr1:61062045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.009	0.0179	RP11-57H12.6->chr1:95583479-95712781:+,RP11-776H12.1->chr1:61005921-61106163:-	NCIH2110_LUNG	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	STK11--HDAC4	1	2	STK11	3716	chr19:1207202:+	HDAC4	32226	chr2:240078469:-	ONLY_REF_SPLICE	NO	20	13	0.13	0.19	0.009	0.0179	STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11,HDAC4->Oncogene{Bushman},chr2:239969864-240323348:-,histone_deacetylase_4	NCIH2110_LUNG	0.13	0.19	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	ARHGAP29--COL24A1	1	1	ARHGAP29	19169	chr1:94654393:-	COL24A1	44500	chr1:86581061:-	ONLY_REF_SPLICE	YES	53	11	0.04	0.15	0.009	0.009	{Klijn_CCL:Lung=1},ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-,COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1	NCIH2110_LUNG	0.04	0.15	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	CHD8--TRAV21	1	1	CHD8	4624	chr14:21899970:-	TRAV21	35936	chr14:22521026:+	ONLY_REF_SPLICE	YES	20	0	0.09	1	0.009	0.009	CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,TRAV21->T_cell_receptor_alpha_variable_21,chr14:22520773-22521315:+	NCIH2110_LUNG	0.09	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	KIF26B--SMYD3	1	1	KIF26B	11092	chr1:245704252:+	SMYD3	55692	chr1:246093239:-	ONLY_REF_SPLICE	YES	2	46	0.5	0.04	0.009	0.009	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	NCIH2110_LUNG	0.04	0.5	0.018	TRUE	0	2	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	KIF26B--SMYD3	1	1	KIF26B	2699	chr1:245319985:+	SMYD3	55692	chr1:246093239:-	ONLY_REF_SPLICE	YES	0	46	1	0.04	0.009	0.009	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	NCIH2110_LUNG	0.04	1	0.018	TRUE	0	18	0	6	12	TRUE	ACH-000929
NCIH660_PROSTATE	EEF2--SLC25A42	417	166	EEF2	7141	chr19:3979327:-	SLC25A42	19726	chr19:19218703:+	ONLY_REF_SPLICE	YES	1097	6	0.35	0.99	4.6037	1.8327	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,SLC25A42->chr19:19174808-19223697:+,solute_carrier_family_25_member_42	NCIH660_PROSTATE	0.35	0.99	6.4364	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	ZNF146--AC020907.1	175	52	ZNF146	2669	chr19:36709097:+	AC020907.1	11373	chr19:35597099:+	INCL_NON_REF_SPLICE	YES	256	4	0.47	0.98	1.932	0.5741	ZNF146->Oncogene{Bushman},chr19:36705504-36729676:+,zinc_finger_protein_146,AC020907.1->chr19:35596873-35598141:+	NCIH660_PROSTATE	0.47	0.98	2.5061	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	ANAPC13--VIT	129	91	ANAPC13	3845	chr3:134201648:-	VIT	11274	chr2:36956569:+	ONLY_REF_SPLICE	YES	143	0	0.61	1	1.4242	1.0047	ANAPC13->anaphase_promoting_complex_subunit_13,chr3:134196548-134205558:-,VIT->chr2:36923833-37041935:+,vitrin	NCIH660_PROSTATE	0.61	1	2.4289	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	105	50	FOXP1	19737	chr3:71247353:-	PDCD6IP	51546	chr3:33853564:+	ONLY_REF_SPLICE	YES	13	129	0.92	0.55	1.1592	0.552	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.55	0.92	1.7112	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	FOXP1--RYBP	98	39	FOXP1	29035	chr3:71090479:-	RYBP	49773	chr3:72428578:-	ONLY_REF_SPLICE	YES	9	18	0.94	0.88	1.0819	0.4306	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,RYBP->RING1_and_YY1_binding_protein,chr3:72420976-72496069:-	NCIH660_PROSTATE	0.88	0.94	1.5125	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	RYBP--FOXP1	71	26	RYBP	1423	chr3:72495647:-	FOXP1	34424	chr3:71161788:-	ONLY_REF_SPLICE	YES	17	14	0.85	0.87	0.7839	0.287	RYBP->RING1_and_YY1_binding_protein,chr3:72420976-72496069:-,FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1	NCIH660_PROSTATE	0.85	0.87	1.0709	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	CTNND2--GNPDA1	34	12	CTNND2	15486	chr5:11236803:-	GNPDA1	37198	chr5:141391606:-	ONLY_REF_SPLICE	YES	35	9	0.57	0.84	0.3754	0.1325	CTNND2->Oncogene{Bushman},catenin_delta_2,chr5:10971952-11904155:-,GNPDA1->chr5:141371314-141392606:-,glucosamine-6-phosphate_deaminase_1	NCIH660_PROSTATE	0.57	0.84	0.5079	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	15	55	FOXP1	19737	chr3:71247353:-	PDCD6IP	50571	chr3:33852589:+	ONLY_REF_SPLICE	YES	13	136	0.84	0.34	0.1656	0.6072	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.34	0.84	0.7728	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	USP15--C12orf56	20	18	USP15	4846	chr12:62696701:+	C12orf56	40343	chr12:64724812:-	ONLY_REF_SPLICE	YES	60	8	0.39	0.83	0.2208	0.1987	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,C12orf56->chr12:64660217-64784972:-,chromosome_12_open_reading_frame_56	NCIH660_PROSTATE	0.39	0.83	0.4195	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	ZNF420--TMLHE	22	10	ZNF420	5639	chr19:37582023:+	TMLHE	18020	chrX:154774938:-	ONLY_REF_SPLICE	YES	45	0	0.42	1	0.2429	0.1104	ZNF420->chr19:37498759-37621216:+,zinc_finger_protein_420,TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon	NCIH660_PROSTATE	0.42	1	0.3533	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	6	51	FOXP1	21397	chr3:71179649:-	PDCD6IP	51546	chr3:33853564:+	ONLY_REF_SPLICE	YES	16	129	0.78	0.31	0.0662	0.563	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.31	0.78	0.6292	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	ZNF146--AC020907.1	18	3	ZNF146	1595	chr19:36706098:+	AC020907.1	11373	chr19:35597099:+	INCL_NON_REF_SPLICE	YES	19	4	0.53	0.84	0.1987	0.0331	ZNF146->Oncogene{Bushman},chr19:36705504-36729676:+,zinc_finger_protein_146,AC020907.1->chr19:35596873-35598141:+	NCIH660_PROSTATE	0.53	0.84	0.2318	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	ZNF146--AC020907.1	3	50	ZNF146	2669	chr19:36709097:+	AC020907.1	11378	chr19:35597104:+	INCL_NON_REF_SPLICE	YES	256	4	0.17	0.93	0.0331	0.552	ZNF146->Oncogene{Bushman},chr19:36705504-36729676:+,zinc_finger_protein_146,AC020907.1->chr19:35596873-35598141:+	NCIH660_PROSTATE	0.17	0.93	0.5851	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	EEF2--SLC25A42	3	37	EEF2	7141	chr19:3979327:-	SLC25A42	20878	chr19:19221378:+	ONLY_REF_SPLICE	YES	1097	70	0.04	0.36	0.0331	0.4085	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,SLC25A42->chr19:19174808-19223697:+,solute_carrier_family_25_member_42	NCIH660_PROSTATE	0.04	0.36	0.4416	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	TMPRSS2--ERG	11	5	TMPRSS2	5769	chr21:42870046:-	ERG	35606	chr21:39817544:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1214	0.0552	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	NCIH660_PROSTATE	0.94	1	0.1766	TRUE	0	51	1	1	51	TRUE	ACH-000177
NCIH660_PROSTATE	USP15--C12orf56	5	18	USP15	7898	chr12:62699839:+	C12orf56	40343	chr12:64724812:-	ONLY_REF_SPLICE	YES	68	8	0.25	0.74	0.0552	0.1987	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,C12orf56->chr12:64660217-64784972:-,chromosome_12_open_reading_frame_56	NCIH660_PROSTATE	0.25	0.74	0.2539	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	1	33	FOXP1	19737	chr3:71247353:-	PDCD6IP	52883	chr3:33855051:+	ONLY_REF_SPLICE	YES	13	98	0.72	0.26	0.011	0.3643	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.26	0.72	0.3753	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	PPA1--NUDT13	5	12	PPA1	2707	chr10:71990097:-	NUDT13	16473	chr10:74870133:+	INCL_NON_REF_SPLICE	NO	263	0	0.06	1	0.0552	0.1325	PPA1->chr10:71962586-71993667:-,pyrophosphatase_(inorganic)_1,NUDT13->chr10:74870217-74891586:+,nudix_hydrolase_13	NCIH660_PROSTATE	0.06	1	0.1877	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	RP11-119F19.2--ANXA11	8	0	RP11-119F19.2	1059	chr10:81526027:-	ANXA11	14269	chr10:81935911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0883	0	RP11-119F19.2->chr10:81422844-81526085:-,ANXA11->annexin_A11,chr10:81910645-81965328:-	NCIH660_PROSTATE	1	1	0.0883	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	PPA1--NUDT13	6	5	PPA1	2707	chr10:71990097:-	NUDT13	17666	chr10:74874115:+	ONLY_REF_SPLICE	YES	263	1	0.04	0.92	0.0662	0.0552	PPA1->chr10:71962586-71993667:-,pyrophosphatase_(inorganic)_1,NUDT13->chr10:74870217-74891586:+,nudix_hydrolase_13	NCIH660_PROSTATE	0.04	0.92	0.1214	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	TMPRSS2--ERG	7	0	TMPRSS2	3407	chr21:42880008:-	ERG	35606	chr21:39817544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0773	0	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	NCIH660_PROSTATE	1	1	0.0773	TRUE	0	117	4	2	116	TRUE	ACH-000177
NCIH660_PROSTATE	TMPRSS2--ERG	6	4	TMPRSS2	3538	chr21:42879877:-	ERG	35606	chr21:39817544:-	ONLY_REF_SPLICE	YES	2	1	0.83	0.91	0.0662	0.0442	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	NCIH660_PROSTATE	0.83	0.91	0.1104	TRUE	0	117	4	2	116	TRUE	ACH-000177
NCIH660_PROSTATE	USP15--C12orf56	3	16	USP15	4846	chr12:62696701:+	C12orf56	40348	chr12:64724807:-	INCL_NON_REF_SPLICE	YES	60	7	0.24	0.73	0.0331	0.1766	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,C12orf56->chr12:64660217-64784972:-,chromosome_12_open_reading_frame_56	NCIH660_PROSTATE	0.24	0.73	0.2097	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	WWOX--VAT1L	6	2	WWOX	10605	chr16:78198186:+	VAT1L	36619	chr16:77896645:+	ONLY_REF_SPLICE	YES	23	0	0.26	1	0.0662	0.0221	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	NCIH660_PROSTATE	0.26	1	0.0883	TRUE	0	0	0	2	0	TRUE	ACH-000177
NCIH660_PROSTATE	ACYP2--SPTBN1	6	1	ACYP2	13762	chr2:54365885:+	SPTBN1	31424	chr2:54826229:+	ONLY_REF_SPLICE	YES	28	86	0.2	0.08	0.0662	0.011	GTEx&tcga_normals:1/3694=0.03%,ACYP2->acylphosphatase_2,chr2:54197975-54532437:+,SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1	NCIH660_PROSTATE	0.08	0.2	0.0772	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	GMDS--RIC8B	5	5	GMDS	1372	chr6:2245555:-	RIC8B	24253	chr12:107177775:+	ONLY_REF_SPLICE	YES	11	10	0.48	0.5	0.0552	0.0552	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+	NCIH660_PROSTATE	0.48	0.5	0.1104	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	2	16	FOXP1	19737	chr3:71247353:-	PDCD6IP	53953	chr3:33863447:+	ONLY_REF_SPLICE	YES	13	104	0.58	0.15	0.0221	0.1766	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.15	0.58	0.1987	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	1	16	FOXP1	21397	chr3:71179649:-	PDCD6IP	53953	chr3:33863447:+	ONLY_REF_SPLICE	YES	16	104	0.52	0.14	0.011	0.1766	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.14	0.52	0.1876	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	E2F2--CTD-2309O5.3	4	0	E2F2	7503	chr1:23842827:-	CTD-2309O5.3	16464	chr17:3067183:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0442	0	E2F2->E2F_transcription_factor_2,Oncogene{Bushman},chr1:23832922-23857712:-,CTD-2309O5.3->chr17:3038263-3080325:-	NCIH660_PROSTATE	1	1	0.0442	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	RSPH1--CREB5	4	0	RSPH1	1222	chr21:43916243:-	CREB5	34530	chr7:28843816:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0442	0	RSPH1->Oncogene{Bushman},chr21:43892596-43916464:-,radial_spoke_head_1_homolog,CREB5->cAMP_responsive_element_binding_protein_5,chr7:28338940-28865511:+	NCIH660_PROSTATE	1	1	0.0442	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	2	5	FOXP1	15873	chr3:71348971:-	PDCD6IP	51546	chr3:33853564:+	ONLY_REF_SPLICE	YES	34	129	0.17	0.05	0.0221	0.0552	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.05	0.17	0.0773	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	NUDT13--NCK1	2	0	NUDT13	9252	chr10:74886585:+	NCK1	17843	chr3:136646826:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	NUDT13->chr10:74870217-74891586:+,nudix_hydrolase_13,NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	PPP2R5C--HSP90AA1	2	0	PPP2R5C	26512	chr14:102359445:+	HSP90AA1	50435	chr14:102548781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	RSPH1--CREB5	2	0	RSPH1	2544	chr21:43912868:-	CREB5	34530	chr7:28843816:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	RSPH1->Oncogene{Bushman},chr21:43892596-43916464:-,radial_spoke_head_1_homolog,CREB5->cAMP_responsive_element_binding_protein_5,chr7:28338940-28865511:+	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	RTKN--FOXJ3	2	0	RTKN	1717	chr2:74668833:-	FOXJ3	16583	chr1:42789498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	RTKN->chr2:74652963-74669549:-,rhotekin,FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	SEC31A--ATF7	2	0	SEC31A	2090	chr4:83821230:-	ATF7	45078	chr12:53946421:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	SLC24A3--DTD1	2	0	SLC24A3	2468	chr20:19261731:+	DTD1	30533	chr20:18724744:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SLC24A3->chr20:19193290-19703581:+,solute_carrier_family_24_member_3,DTD1->D-tyrosyl-tRNA_deacylase_1,chr20:18568537-18744561:+	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	2	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	U2SURP--CDV3	2	0	U2SURP	4885	chr3:142720515:+	CDV3	42985	chr3:133302846:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+,CDV3->CDV3_homolog,chr3:133292574-133309105:+	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	BCL11A--RP11-444A22.1	1	3	BCL11A	3729	chr2:60773106:-	RP11-444A22.1	24043	chr2:60054406:-	ONLY_REF_SPLICE	YES	20	0	0.17	1	0.011	0.0331	BCL11A->B-cell_CLL/lymphoma_11A,Oncogene{Bushman},chr2:60678302-60780702:-,RP11-444A22.1->chr2:59445815-60327335:-	NCIH660_PROSTATE	0.17	1	0.0441	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	BCL11A--RP11-444A22.1	1	1	BCL11A	3729	chr2:60773106:-	RP11-444A22.1	25169	chr2:59739340:-	ONLY_REF_SPLICE	YES	20	0	0.09	1	0.011	0.011	BCL11A->B-cell_CLL/lymphoma_11A,Oncogene{Bushman},chr2:60678302-60780702:-,RP11-444A22.1->chr2:59445815-60327335:-	NCIH660_PROSTATE	0.09	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	ZNF420--TMLHE	1	1	ZNF420	2379	chr19:37569472:+	TMLHE	18020	chrX:154774938:-	ONLY_REF_SPLICE	YES	47	0	0.04	1	0.011	0.011	ZNF420->chr19:37498759-37621216:+,zinc_finger_protein_420,TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon	NCIH660_PROSTATE	0.04	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000177
OCUM1_STOMACH	RP11-1143G9.4--ERLIN2	1684	3	RP11-1143G9.4	1460	chr12:69747546:-	ERLIN2	18259	chr8:37613448:+	INCL_NON_REF_SPLICE	YES	3683	47	0.31	0.97	20.1522	0.0359	RP11-1143G9.4->chr12:69747273-69748005:-,ERLIN2->ER_lipid_raft_associated_2,chr8:37594117-37616619:+	OCUM1_STOMACH	0.31	0.97	20.1881	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	AP000350.4--PKM	8	5	AP000350.4	3774	chr22:24236611:-	PKM	7428	chr15:72523509:-	INCL_NON_REF_SPLICE	YES	0	88	1	0.13	0.0957	0.0598	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	OCUM1_STOMACH	0.13	1	0.1555	TRUE	0	0	0	14	0	TRUE	ACH-000247
OCUM1_STOMACH	SP1--ESPL1	8	3	SP1	4447	chr12:53777406:+	ESPL1	32267	chr12:53681907:+	INCL_NON_REF_SPLICE	YES	127	31	0.08	0.26	0.0957	0.0359	LOCAL_REARRANGEMENT:+:[86533],SP1->Sp1_transcription_factor,chr12:53773960-53810230:+,ESPL1->chr12:53662083-53687427:+,extra_spindle_pole_bodies_like_1,_separase	OCUM1_STOMACH	0.08	0.26	0.1316	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	AMDHD1--CROCCP4	5	3	AMDHD1	2625	chr12:96341215:+	CROCCP4	15412	chr1:17077009:+	ONLY_REF_SPLICE	YES	13	0	0.38	1	0.0598	0.0359	AMDHD1->amidohydrolase_domain_containing_1,chr12:96337071-96362370:+,CROCCP4->chr1:17076728-17077459:+,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_4	OCUM1_STOMACH	0.38	1	0.0957	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	AP000350.4--PKM	3	5	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	89	1	0.08	0.0359	0.0598	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	OCUM1_STOMACH	0.08	1	0.0957	TRUE	0	0	0	14	0	TRUE	ACH-000247
OCUM1_STOMACH	AES--MTATP6P1	3	0	AES	2887	chr19:3061219:-	MTATP6P1	12247	chr1:569327:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	AES->amino-terminal_enhancer_of_split,chr19:3052908-3063105:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OCUM1_STOMACH	1	1	0.0359	TRUE	0	0	0	3	0	TRUE	ACH-000247
OCUM1_STOMACH	SP1--ESPL1	3	0	SP1	4447	chr12:53777406:+	ESPL1	32682	chr12:53682322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[86533],SP1->Sp1_transcription_factor,chr12:53773960-53810230:+,ESPL1->chr12:53662083-53687427:+,extra_spindle_pole_bodies_like_1,_separase	OCUM1_STOMACH	1	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	AMDHD1--CROCCP4	2	1	AMDHD1	2625	chr12:96341215:+	CROCCP4	15571	chr1:17077168:+	ONLY_REF_SPLICE	YES	13	2	0.19	0.6	0.0239	0.012	AMDHD1->amidohydrolase_domain_containing_1,chr12:96337071-96362370:+,CROCCP4->chr1:17076728-17077459:+,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_4	OCUM1_STOMACH	0.19	0.6	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	CPSF6--CYP3A5	2	0	CPSF6	11046	chr12:69656342:+	CYP3A5	21435	chr7:99273831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CYP3A5->chr7:99245817-99277621:-,cytochrome_P450_family_3_subfamily_A_member_5	OCUM1_STOMACH	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	MATR3--C9orf85	2	0	MATR3	3802	chr5:138614097:+	C9orf85	38501	chr9:74586421:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	MATR3->chr5:138609441-138667360:+,matrin_3,C9orf85->chr9:74526426-74600970:+,chromosome_9_open_reading_frame_85	OCUM1_STOMACH	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	RAB30-AS1--HNRNPUL2	2	0	RAB30-AS1	1637	chr11:82783744:+	HNRNPUL2	15454	chr11:62487663:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	RAB30-AS1->RAB30_antisense_RNA_1_(head_to_head),chr11:82783108-82817761:+,HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2	OCUM1_STOMACH	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000247
COLO678_LARGE_INTESTINE	NOTCH2NL--PDE4DIP	63	19	NOTCH2NL	1318	chr1:145209436:+	PDE4DIP	21604	chr1:145021167:-	ONLY_REF_SPLICE	YES	215	0	0.28	1	0.5546	0.1673	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	COLO678_LARGE_INTESTINE	0.28	1	0.7219	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	TBC1D8--CREG2	57	13	TBC1D8	9521	chr2:101675883:-	CREG2	34869	chr2:101971828:-	ONLY_REF_SPLICE	YES	19	2	0.79	0.97	0.5018	0.1144	LOCAL_REARRANGEMENT:-:[92685],TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,CREG2->cellular_repressor_of_E1A_stimulated_genes_2,chr2:101962013-102004057:-	COLO678_LARGE_INTESTINE	0.79	0.97	0.6162	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	SUZ12P--RP11-640N20.8	51	9	SUZ12P	5451	chr17:29062115:+	RP11-640N20.8	23514	chr17:30415259:-	ONLY_REF_SPLICE	YES	88	0	0.41	1	0.449	0.0792	SUZ12P->chr17:29036317-29117926:+,RP11-640N20.8->chr17:30415179-30421952:-	COLO678_LARGE_INTESTINE	0.41	1	0.5282	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MPRIP--DRG2	40	13	MPRIP	4886	chr17:16981390:+	DRG2	52696	chr17:17997127:+	ONLY_REF_SPLICE	YES	121	55	0.3	0.49	0.3521	0.1144	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,DRG2->chr17:17991200-18011285:+,developmentally_regulated_GTP_binding_protein_2	COLO678_LARGE_INTESTINE	0.3	0.49	0.4665	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	WDFY3--RP11-359D14.3	37	9	WDFY3	10356	chr4:85758082:-	RP11-359D14.3	86039	chr4:77679745:-	ONLY_REF_SPLICE	YES	5	0	0.9	1	0.3257	0.0792	WDFY3->WD_repeat_and_FYVE_domain_containing_3,chr4:85590704-85887544:-,RP11-359D14.3->chr4:77679707-77723117:-	COLO678_LARGE_INTESTINE	0.9	1	0.4049	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	UBR1--TGM5	32	22	UBR1	21516	chr15:43322142:-	TGM5	65003	chr15:43528035:-	ONLY_REF_SPLICE	YES	19	0	0.74	1	0.2817	0.1937	UBR1->chr15:43235095-43398311:-,ubiquitin_protein_ligase_E3_component_n-recognin_1,TGM5->chr15:43524793-43559055:-,transglutaminase_5	COLO678_LARGE_INTESTINE	0.74	1	0.4754	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	FRMD5--CYFIP1	27	0	FRMD5	1300	chr15:44487151:-	CYFIP1	26766	chr15:22925777:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2377	0	FRMD5->FERM_domain_containing_5,chr15:44162962-44487450:-,CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1	COLO678_LARGE_INTESTINE	1	1	0.2377	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	COG3--TDRD3	20	11	COG3	16707	chr13:46083951:+	TDRD3	45092	chr13:61102501:+	ONLY_REF_SPLICE	YES	28	14	0.53	0.69	0.1761	0.0968	COG3->chr13:46039060-46110765:+,component_of_oligomeric_golgi_complex_3,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	COLO678_LARGE_INTESTINE	0.53	0.69	0.2729	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	CYFIP1--CHP1	17	11	CYFIP1	24657	chr15:22969362:+	CHP1	42717	chr15:41535865:+	ONLY_REF_SPLICE	YES	150	94	0.16	0.23	0.1497	0.0968	CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1,CHP1->calcineurin_like_EF-hand_protein_1,chr15:41523037-41574043:+	COLO678_LARGE_INTESTINE	0.16	0.23	0.2465	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MPRIP--DRG2	14	11	MPRIP	4886	chr17:16981390:+	DRG2	57013	chr17:18001584:+	ONLY_REF_SPLICE	YES	121	96	0.17	0.21	0.1232	0.0968	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,DRG2->chr17:17991200-18011285:+,developmentally_regulated_GTP_binding_protein_2	COLO678_LARGE_INTESTINE	0.17	0.21	0.22	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	SF1--MACROD1	10	5	SF1	3289	chr11:64543970:-	MACROD1	17637	chr11:63919865:-	ONLY_REF_SPLICE	YES	118	27	0.11	0.36	0.088	0.044	GTEx&tcga_normals:1/3694=0.03%,SF1->chr11:64532078-64546258:-,splicing_factor_1,MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-	COLO678_LARGE_INTESTINE	0.11	0.36	0.132	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	ELAC1--RP11-267C16.1	8	2	ELAC1	3437	chr18:48500931:+	RP11-267C16.1	15271	chr18:48991777:+	ONLY_REF_SPLICE	YES	25	0	0.29	1	0.0704	0.0176	ELAC1->chr18:48494361-48514491:+,elaC_ribonuclease_Z_1,RP11-267C16.1->chr18:48872619-49088939:+	COLO678_LARGE_INTESTINE	0.29	1	0.088	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	ETV6--LOH12CR1	6	4	ETV6	1307	chr12:11803094:+	LOH12CR1	23195	chr12:12514140:+	ONLY_REF_SPLICE	YES	9	7	0.53	0.59	0.0528	0.0352	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,LOH12CR1->chr12:12510013-12619840:+	COLO678_LARGE_INTESTINE	0.53	0.59	0.088	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	ETV6--LOH12CR1	5	3	ETV6	1307	chr12:11803094:+	LOH12CR1	24339	chr12:12588562:+	ONLY_REF_SPLICE	YES	9	18	0.47	0.31	0.044	0.0264	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,LOH12CR1->chr12:12510013-12619840:+	COLO678_LARGE_INTESTINE	0.31	0.47	0.0704	TRUE	0	1	0	1	1	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	TEFM--AC005562.1	4	1	TEFM	4294	chr17:29227431:-	AC005562.1	24211	chr17:28975385:+	ONLY_REF_SPLICE	YES	45	1	0.1	0.83	0.0352	0.0088	TEFM->chr17:29224354-29233838:-,transcription_elongation_factor,_mitochondrial,AC005562.1->chr17:28903482-28999807:+	COLO678_LARGE_INTESTINE	0.1	0.83	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	ELAC1--RP11-267C16.1	3	3	ELAC1	4905	chr18:48510933:+	RP11-267C16.1	15271	chr18:48991777:+	ONLY_REF_SPLICE	YES	15	0	0.29	1	0.0264	0.0264	ELAC1->chr18:48494361-48514491:+,elaC_ribonuclease_Z_1,RP11-267C16.1->chr18:48872619-49088939:+	COLO678_LARGE_INTESTINE	0.29	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	SUZ12P--RP11-640N20.8	3	2	SUZ12P	1513	chr17:29036829:+	RP11-640N20.8	23514	chr17:30415259:-	ONLY_REF_SPLICE	YES	61	0	0.08	1	0.0264	0.0176	SUZ12P->chr17:29036317-29117926:+,RP11-640N20.8->chr17:30415179-30421952:-	COLO678_LARGE_INTESTINE	0.08	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	PRKCA--PITPNC1	3	0	PRKCA	4995	chr17:64492401:+	PITPNC1	39919	chr17:65528918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[LUAD:1|SKCM:1],PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1	COLO678_LARGE_INTESTINE	1	1	0.0264	TRUE	0	1	0	1	1	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	SUZ12P--RP11-640N20.8	2	3	SUZ12P	2931	chr17:29059141:+	RP11-640N20.8	23514	chr17:30415259:-	ONLY_REF_SPLICE	YES	114	0	0.04	1	0.0176	0.0264	SUZ12P->chr17:29036317-29117926:+,RP11-640N20.8->chr17:30415179-30421952:-	COLO678_LARGE_INTESTINE	0.04	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	TEFM--AC005562.1	2	1	TEFM	3117	chr17:29231084:-	AC005562.1	24211	chr17:28975385:+	ONLY_REF_SPLICE	YES	32	1	0.09	0.75	0.0176	0.0088	TEFM->chr17:29224354-29233838:-,transcription_elongation_factor,_mitochondrial,AC005562.1->chr17:28903482-28999807:+	COLO678_LARGE_INTESTINE	0.09	0.75	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	ELAC1--RP11-267C16.1	2	0	ELAC1	3437	chr18:48500931:+	RP11-267C16.1	21395	chr18:49058482:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	ELAC1->chr18:48494361-48514491:+,elaC_ribonuclease_Z_1,RP11-267C16.1->chr18:48872619-49088939:+	COLO678_LARGE_INTESTINE	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	FRMD5--CYFIP1	2	0	FRMD5	1300	chr15:44487151:-	CYFIP1	26739	chr15:22925750:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	FRMD5->FERM_domain_containing_5,chr15:44162962-44487450:-,CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1	COLO678_LARGE_INTESTINE	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	PSPC1P1--RBM4	2	0	PSPC1P1	1185	chr13:19801388:-	RBM4	19702	chr11:66433327:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	PSPC1P1->chr13:19775777-19801572:-,paraspeckle_component_1_pseudogene_1,RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+	COLO678_LARGE_INTESTINE	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	ZBTB4--KIAA0753	1	4	ZBTB4	4947	chr17:7369030:-	KIAA0753	30343	chr17:6499663:-	ONLY_REF_SPLICE	YES	78	17	0.06	0.23	0.0088	0.0352	ZBTB4->chr17:7362685-7387582:-,zinc_finger_and_BTB_domain_containing_4,KIAA0753->KIAA0753,chr17:6481468-6544247:-	COLO678_LARGE_INTESTINE	0.06	0.23	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	UBR1--TGM5	1	3	UBR1	20391	chr15:43324766:-	TGM5	65003	chr15:43528035:-	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0088	0.0264	UBR1->chr15:43235095-43398311:-,ubiquitin_protein_ligase_E3_component_n-recognin_1,TGM5->chr15:43524793-43559055:-,transglutaminase_5	COLO678_LARGE_INTESTINE	0.29	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	ATL2--HNRNPLL	1	1	ATL2	6688	chr2:38570410:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	45	66	0.04	0.03	0.0088	0.0088	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	COLO678_LARGE_INTESTINE	0.03	0.04	0.0176	TRUE	0	5	0	8	2	TRUE	ACH-000350
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THOC2--MTSS1	276	122	THOC2	3256	chrX:122840708:-	MTSS1	44405	chr8:125716432:-	ONLY_REF_SPLICE	YES	34	0	0.92	1	3.1062	1.373	{Klijn_CCL:Other=1},THOC2->THO_complex_2,chrX:122734412-122866906:-,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	4.4792	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR137B--IGL@	50	0	GPR137B	1048	chr1:236305879:+	IGL@	75258	chr22:23243154:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5627	0	GPR137B->G_protein-coupled_receptor_137B,chr1:236305832-236385165:+,IGL@->Oncogene{Bushman}	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5627	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THOC2--MTSS1	15	124	THOC2	4312	chrX:122837304:-	MTSS1	44405	chr8:125716432:-	ONLY_REF_SPLICE	YES	26	0	0.84	1	0.1688	1.3956	{Klijn_CCL:Other=1},THOC2->THO_complex_2,chrX:122734412-122866906:-,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	1.5644	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR137B--IGL@	36	0	GPR137B	1048	chr1:236305879:+	IGL@	77896	chr22:23248510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4052	0	GPR137B->G_protein-coupled_receptor_137B,chr1:236305832-236385165:+,IGL@->Oncogene{Bushman}	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4052	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THOC2--MTSS1	3	122	THOC2	3260	chrX:122840704:-	MTSS1	44405	chr8:125716432:-	ONLY_REF_SPLICE	YES	37	0	0.77	1	0.0338	1.373	{Klijn_CCL:Other=1},THOC2->THO_complex_2,chrX:122734412-122866906:-,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	1.4068	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6-AS1--TFDP1	3	0	GAS6-AS1	1062	chr13:114518664:+	TFDP1	11094	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	TRUE	0	0	0	4	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX22--IL4I1	3	0	SNX22	4904	chr15:64447817:+	IL4I1	9933	chr19:50432631:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	SNX22->chr15:64443914-64449680:+,sorting_nexin_22,IL4I1->chr19:50392911-50432796:-,interleukin_4_induced_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BZRAP1-AS1--HNRNPA2B1	2	0	BZRAP1-AS1	5371	chr17:56415040:+	HNRNPA2B1	25416	chr7:26230748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	BZRAP1-AS1->BZRAP1_antisense_RNA_1,chr17:56402811-56493127:+,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-3138B18.5--TAOK3	2	0	CTD-3138B18.5	1286	chr19:58789889:-	TAOK3	40500	chr12:118590214:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CTD-3138B18.5->chr19:58768639-58790174:-,TAOK3->TAO_kinase_3,chr12:118587606-118810750:-	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EAF2--CD47	2	0	EAF2	1209	chr3:121554238:+	CD47	13948	chr3:107799191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	EAF2->ELL_associated_factor_2,chr3:121554030-121605373:+,CD47->CD47_molecule,chr3:107762145-107809872:-	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNBP1--IFI16	2	0	FNBP1	4269	chr9:132740744:-	IFI16	31165	chr1:158979793:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	FNBP1->Oncogene{Bushman},chr9:132649466-132805473:-,formin_binding_protein_1,IFI16->chr1:158969758-159024945:+,interferon_gamma_inducible_protein_16	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXN2--MSH2	2	0	FOXN2	1178	chr2:48541953:+	MSH2	22781	chr2:47656881:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	FOXN2->chr2:48541776-48606433:+,forkhead_box_N2,MSH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47630108-47789450:+,mutS_homolog_2	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPD1--OBFC1	2	0	HSPD1	8399	chr2:198358048:-	OBFC1	22806	chr10:105657477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1,OBFC1->chr10:105642300-105677963:-,oligonucleotide/oligosaccharide_binding_fold_containing_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LHFPL2--PSMB1	2	0	LHFPL2	7033	chr5:77928087:-	PSMB1	26495	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	2	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2J3--L3MBTL3	2	0	POLR2J3	5847	chr7:102207444:-	L3MBTL3	23968	chr6:130343372:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,L3MBTL3->chr6:130334844-130462594:+,l(3)mbt-like_3_(Drosophila)	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1B--CXorf40A	2	0	RAP1B	1205	chr12:69004823:+	CXorf40A	20336	chrX:148623564:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,CXorf40A->chrX:148621900-148632055:+,chromosome_X_open_reading_frame_40A	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--AIFM1	2	0	RCC1	2920	chr1:28835417:+	AIFM1	32739	chrX:129265774:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,AIFM1->Oncogene{Bushman},apoptosis_inducing_factor,_mitochondria_associated_1,chrX:129263337-129299861:-	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-398K22.12--C6orf57	2	0	RP11-398K22.12	1202	chr6:73973139:+	C6orf57	17404	chr6:71289117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RP11-398K22.12->chr6:73972938-74011124:+,C6orf57->chr6:71276620-71299272:+	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	1	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--CNPPD1	2	0	RPS3	2292	chr11:75111821:+	CNPPD1	14242	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SERF2--PPIP5K1	2	0	SERF2	5397	chr15:44085281:+	PPIP5K1	35490	chr15:43851130:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,PPIP5K1->chr15:43825660-43882430:-,diphosphoinositol_pentakisphosphate_kinase_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SWAP70--ATP8A1	2	0	SWAP70	2343	chr11:9715833:+	ATP8A1	52985	chr4:42487685:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	SWAP70->Oncogene{Bushman},SWAP_switching_B-cell_complex_70kDa_subunit,chr11:9685624-9774538:+,ATP8A1->ATPase_phospholipid_transporting_8A1,chr4:42410390-42659122:-	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAOK3--SUDS3	2	0	TAOK3	10456	chr12:118693253:-	SUDS3	51110	chr12:118848878:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_INVERSION:-:+:[3435],TAOK3->TAO_kinase_3,chr12:118587606-118810750:-,SUDS3->SDS3_homolog,_SIN3A_corepressor_complex_component,chr12:118814185-118855840:+	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIT1--MACF1	2	0	TRIT1	1194	chr1:40348990:-	MACF1	94912	chr1:39888046:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UTP6--LCP1	2	0	UTP6	9761	chr17:30212999:-	LCP1	36474	chr13:46730705:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	UTP6->UTP6,_small_subunit_processome_component,chr17:30187923-30228784:-,LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF682--TP53BP1	2	0	ZNF682	5006	chr19:20133813:-	TP53BP1	26430	chr15:43762264:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ZNF682->chr19:20107867-20150315:-,zinc_finger_protein_682,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SET--NUP214	641	158	SET	8532	chr9:131456321:+	NUP214	32521	chr9:134034770:+	ONLY_REF_SPLICE	YES	282	23	0.74	0.97	10.1384	2.499	Mitelman{Skin=1,ALL=2,AML=1},chimerdb_omim:{myeloidleukemogenesis},chimerdb_pubmed{acute undifferentiated leukemia,acute myeloid leukemia},SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.97	12.6374	TRUE	0	0	0	1	0	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-499F3.2--TYW1	17	0	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2689	0	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2689	TRUE	1	3	0	7	3	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SET--NUP214	1	64	SET	8532	chr9:131456321:+	NUP214	33625	chr9:134038378:+	ONLY_REF_SPLICE	YES	282	107	0.19	0.38	0.0158	1.0123	Mitelman{Skin=1,ALL=2,AML=1},chimerdb_omim:{myeloidleukemogenesis},chimerdb_pubmed{acute undifferentiated leukemia,acute myeloid leukemia},SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.38	1.0281	TRUE	0	0	0	1	0	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--IGHV3-29	3	0	CPSF6	11046	chr12:69656342:+	IGHV3-29	20032	chr14:106787666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0474	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IGHV3-29->chr14:106787368-106787804:-,immunoglobulin_heavy_variable_3-29_(pseudogene)	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0474	TRUE	0	0	0	3	0	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK19--SOBP	2	0	CDK19	1151	chr6:111137011:-	SOBP	28907	chr6:107854663:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	CDK19->chr6:110931181-111137161:-,cyclin-dependent_kinase_19,SOBP->chr6:107811162-107981357:+,sine_oculis_binding_protein_homolog	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCK--FIP1L1	2	0	DCK	3596	chr4:71863899:+	FIP1L1	21687	chr4:54265897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	DCK->chr4:71858255-71896631:+,deoxycytidine_kinase,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--IGHV3-29	2	0	ITGA4	11125	chr2:182350719:+	IGHV3-29	33307	chr14:106787666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,IGHV3-29->chr14:106787368-106787804:-,immunoglobulin_heavy_variable_3-29_(pseudogene)	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAVS--CKAP2	2	0	MAVS	1064	chr20:3827550:+	CKAP2	16225	chr13:53035193:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	MAVS->chr20:3827487-3849280:+,mitochondrial_antiviral_signaling_protein,CKAP2->chr13:53029564-53050763:+,cytoskeleton_associated_protein_2	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000104
JHH7_LIVER	PTPLAD1--IGF2	344	23	PTPLAD1	18266	chr15:65869815:+	IGF2	32899	chr11:2153078:-	INCL_NON_REF_SPLICE	YES	466	8576	0.44	0.04	4.6403	0.3103	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0.04	0.44	4.9506	TRUE	0	0	0	4	0	TRUE	ACH-000848
JHH7_LIVER	ATXN7L3--IGF2	123	0	ATXN7L3	6307	chr17:42272175:-	IGF2	22861	chr11:2153287:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6592	0	ATXN7L3->ataxin_7_like_3,chr17:42269173-42277481:-,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	1	1	1.6592	TRUE	0	0	0	2	0	TRUE	ACH-000848
JHH7_LIVER	C16orf70--CBFB	99	34	C16orf70	12302	chr16:67178279:+	CBFB	26625	chr16:67132613:+	ONLY_REF_SPLICE	YES	38	116	0.78	0.53	1.3354	0.4586	{Klijn_CCL:Brain=1,Liver=1},LOCAL_REARRANGEMENT:+:[8900],C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	JHH7_LIVER	0.53	0.78	1.794	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	RP11-391M20.1--PIGL	22	3	RP11-391M20.1	2134	chr9:68728906:+	PIGL	13554	chr17:16203202:+	INCL_NON_REF_SPLICE	YES	3	28	0.89	0.47	0.2968	0.0405	RP11-391M20.1->chr9:68726629-68745997:+,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	JHH7_LIVER	0.47	0.89	0.3373	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	SASH1--TRDN	12	4	SASH1	2705	chr6:148664359:+	TRDN	38940	chr6:123837351:-	ONLY_REF_SPLICE	YES	12	0	0.57	1	0.1619	0.054	SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+,TRDN->chr6:123537483-123958238:-,triadin	JHH7_LIVER	0.57	1	0.2159	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	MTL5--CPT1A	7	2	MTL5	3534	chr11:68514676:-	CPT1A	32010	chr11:68562379:-	ONLY_REF_SPLICE	YES	36	188	0.2	0.05	0.0944	0.027	LOCAL_REARRANGEMENT:-:[3056],MTL5->chr11:68474908-68519032:-,CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-	JHH7_LIVER	0.05	0.2	0.1214	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	C16orf70--CBFB	1	19	C16orf70	11219	chr16:67174497:+	CBFB	26625	chr16:67132613:+	ONLY_REF_SPLICE	YES	37	116	0.35	0.15	0.0135	0.2563	{Klijn_CCL:Brain=1,Liver=1},LOCAL_REARRANGEMENT:+:[8900],C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	JHH7_LIVER	0.15	0.35	0.2698	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	TMEM120B--CASS4	5	3	TMEM120B	1213	chr12:122150870:+	CASS4	22007	chr20:54987393:+	ONLY_REF_SPLICE	YES	21	0	0.28	1	0.0674	0.0405	TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,CASS4->Cas_scaffolding_protein_family_member_4,chr20:54987168-55034396:+	JHH7_LIVER	0.28	1	0.1079	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	GNPNAT1--TXNDC16	4	2	GNPNAT1	1241	chr14:53258146:-	TXNDC16	15217	chr14:53011089:-	ONLY_REF_SPLICE	YES	48	34	0.11	0.15	0.054	0.027	GNPNAT1->chr14:53241912-53258386:-,glucosamine-phosphate_N-acetyltransferase_1,TXNDC16->chr14:52897308-53019240:-,thioredoxin_domain_containing_16	JHH7_LIVER	0.11	0.15	0.081	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	CDK13--LINC00265	3	5	CDK13	7958	chr7:40041630:+	LINC00265	26614	chr7:39807003:+	ONLY_REF_SPLICE	YES	25	1	0.24	0.89	0.0405	0.0674	CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,LINC00265->chr7:39773231-39832691:+,long_intergenic_non-protein_coding_RNA_265	JHH7_LIVER	0.24	0.89	0.1079	TRUE	0	0	0	2	0	TRUE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	4	0	PTPLAD1	18239	chr15:65869788:+	IGF2	33183	chr11:2152794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	1	1	0.054	TRUE	0	0	0	4	0	TRUE	ACH-000848
JHH7_LIVER	ATXN7L3--IGF2	3	0	ATXN7L3	6317	chr17:42272165:-	IGF2	22861	chr11:2153287:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	ATXN7L3->ataxin_7_like_3,chr17:42269173-42277481:-,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	1	1	0.0405	TRUE	0	0	0	2	0	TRUE	ACH-000848
JHH7_LIVER	KIAA1958--HSDL2	3	0	KIAA1958	3467	chr9:115337531:+	HSDL2	31434	chr9:115216293:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0405	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[14437],KIAA1958->KIAA1958,chr9:115249127-115431677:+,HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2	JHH7_LIVER	1	1	0.0405	TRUE	0	0	0	2	0	TRUE	ACH-000848
JHH7_LIVER	CLASP2--SUSD5	2	2	CLASP2	1549	chr3:33759300:-	SUSD5	64609	chr3:33255597:-	ONLY_REF_SPLICE	NO	8	0	0.33	1	0.027	0.027	CLASP2->chr3:33537737-33759848:-,cytoplasmic_linker_associated_protein_2,SUSD5->chr3:33191537-33260707:-,sushi_domain_containing_5	JHH7_LIVER	0.33	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	ECHDC1--RNF146	2	0	ECHDC1	10423	chr6:127635961:-	RNF146	20245	chr6:127601376:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=5;pct=0.06%;dist=Thyroid=2,Whole_Blood=1,Heart_-_Left_Ventricle=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[143],ECHDC1->chr6:127609855-127664754:-,ethylmalonyl-CoA_decarboxylase_1,RNF146->chr6:127587755-127609712:+,ring_finger_protein_146	JHH7_LIVER	1	1	0.027	TRUE	1	2	1	3	0	TRUE	ACH-000848
JHH7_LIVER	RCC1--EIF4A1	2	0	RCC1	2175	chr1:28834672:+	EIF4A1	21291	chr17:7478437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	JHH7_LIVER	1	1	0.027	TRUE	0	0	0	2	0	TRUE	ACH-000848
JHH7_LIVER	RP11-435B5.4--CENPV	2	0	RP11-435B5.4	2843	chr1:143465380:-	CENPV	21228	chr17:16253343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	RP11-435B5.4->chr1:143354963-143467632:-,CENPV->centromere_protein_V,chr17:16245848-16256970:-	JHH7_LIVER	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	TMEM120B--CASS4	1	1	TMEM120B	1213	chr12:122150870:+	CASS4	23165	chr20:55012220:+	ONLY_REF_SPLICE	YES	21	0	0.09	1	0.0135	0.0135	TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,CASS4->Cas_scaffolding_protein_family_member_4,chr20:54987168-55034396:+	JHH7_LIVER	0.09	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000848
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	128	82	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	60	0	0.78	1	2.0093	1.2872	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	3.2965	TRUE	0	2	1	16	2	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MADD--DDB2	80	60	MADD	13933	chr11:47307141:+	DDB2	42604	chr11:47260351:+	ONLY_REF_SPLICE	YES	39	57	0.78	0.71	1.2558	0.9418	LOCAL_REARRANGEMENT:+:[29945],MADD->MAP_kinase_activating_death_domain,chr11:47290712-47351582:+,DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.78	2.1976	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	49	29	ABL1	1510	chr9:133589842:+	BCR	40306	chr22:23632526:+	ONLY_REF_SPLICE	YES	0	63	1	0.55	0.7692	0.4552	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	1.2244	TRUE	0	0	0	6	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MADD--DDB2	40	37	MADD	13537	chr11:47306745:+	DDB2	42604	chr11:47260351:+	ONLY_REF_SPLICE	YES	78	57	0.5	0.57	0.6279	0.5808	LOCAL_REARRANGEMENT:+:[29945],MADD->MAP_kinase_activating_death_domain,chr11:47290712-47351582:+,DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.57	1.2087	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ECHDC1--NKAIN2	35	10	ECHDC1	7230	chr6:127648147:-	NKAIN2	21704	chr6:124604151:+	ONLY_REF_SPLICE	YES	36	0	0.56	1	0.5494	0.157	ECHDC1->chr6:127609855-127664754:-,ethylmalonyl-CoA_decarboxylase_1,NKAIN2->Na+/K+_transporting_ATPase_interacting_2,Oncogene{Bushman},chr6:124125286-125146803:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.7064	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-338M12.9--KMT2C	22	48	CTC-338M12.9	2428	chr5:180710532:+	KMT2C	13003	chr7:151970952:-	INCL_NON_REF_SPLICE	YES	0	11	1	0.86	0.3453	0.7535	CTC-338M12.9->chr5:180708376-180710653:+,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	1.0988	TRUE	0	0	0	3	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PTCD3	25	0	C17orf76-AS1	3754	chr17:16344889:+	PTCD3	29917	chr2:86359744:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3924	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3924	TRUE	0	0	0	4	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LEMD3--PTPRR	16	6	LEMD3	2548	chr12:65564898:+	PTPRR	24009	chr12:71148081:-	ONLY_REF_SPLICE	YES	20	0	0.52	1	0.2512	0.0942	LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+,PTPRR->chr12:71031853-71314623:-,protein_tyrosine_phosphatase,_receptor_type_R	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	1	0.3454	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MADD--DDB2	12	18	MADD	13408	chr11:47306616:+	DDB2	42604	chr11:47260351:+	ONLY_REF_SPLICE	YES	63	57	0.32	0.34	0.1884	0.2826	LOCAL_REARRANGEMENT:+:[29945],MADD->MAP_kinase_activating_death_domain,chr11:47290712-47351582:+,DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.34	0.471	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND5B--SMYD4	11	4	DENND5B	7648	chr12:31632523:-	SMYD4	43181	chr17:1708009:-	ONLY_REF_SPLICE	YES	13	9	0.54	0.62	0.1727	0.0628	DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-,SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.62	0.2355	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	6	12	CCDC26	6922	chr8:130365050:-	LINC00977	12110	chr8:130235615:-	INCL_NON_REF_SPLICE	YES	92	0	0.16	1	0.0942	0.1884	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.2826	TRUE	0	0	0	4	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	2	18	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	0	63	1	0.24	0.0314	0.2826	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.314	TRUE	0	2	0	9	2	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--PCED1B-AS1	5	0	RPL23AP53	2207	chr8:180804:-	PCED1B-AS1	9973	chr12:47604520:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0785	0	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,PCED1B-AS1->PCED1B_antisense_RNA_1,chr12:47599681-47610239:-	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0785	TRUE	0	0	0	3	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	4	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	26	9	0.21	0.44	0.0471	0.0628	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.44	0.1099	TRUE	0	2	0	11	2	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIST1H1C--PTMA	4	0	HIST1H1C	1217	chr6:26056483:-	PTMA	6369	chr2:232573241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0	HIST1H1C->Oncogene{Bushman},chr6:26055968-26056699:-,histone_cluster_1,_H1c,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0628	TRUE	0	0	0	3	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR210HG--EGFL7	4	0	MIR210HG	1106	chr11:568352:-	EGFL7	15106	chr9:139565402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0628	0	MIR210HG->MIR210_host_gene,chr11:565660-568457:-,EGFL7->EGF_like_domain_multiple_7,chr9:139553308-139567130:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2251F13.1--PRKD1	3	0	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0471	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0471	TRUE	0	3	0	8	3	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	2	3	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	27	2	0.16	0.71	0.0314	0.0471	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.71	0.0785	TRUE	0	0	0	16	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C12orf44--DDX46	2	0	C12orf44	2238	chr12:52464267:+	DDX46	23830	chr5:134126160:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	C12orf44->chr12:52463030-52471278:+,DDX46->DEAD-box_helicase_46,chr5:134094469-134190823:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PTCD3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	3	0	8	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--BAGE2	2	0	CPSF6	11046	chr12:69656342:+	BAGE2	24376	chr21:11058323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	1	0	2	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1549--PABPC1	2	0	KIAA1549	14118	chr7:138579088:-	PABPC1	38276	chr8:101730116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	KIAA1549->KIAA1549,Oncogene{Bushman},chr7:138516126-138666064:-,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPS36--MSH3	2	0	MRPS36	1112	chr5:68513698:+	MSH3	31973	chr5:80149949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	MRPS36->chr5:68513587-68525956:+,mitochondrial_ribosomal_protein_S36,MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PXMP2--TANGO6	2	0	PXMP2	2662	chr12:133266962:+	TANGO6	39259	chr16:69117388:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFR--ZNF609	2	0	ZFR	11931	chr5:32395265:-	ZNF609	33177	chr15:64915026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein,ZNF609->chr15:64752941-64978264:+,zinc_finger_protein_609	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LEMD3--PTPRR	1	3	LEMD3	2548	chr12:65564898:+	PTPRR	25120	chr12:71139866:-	ONLY_REF_SPLICE	YES	20	1	0.17	0.8	0.0157	0.0471	LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+,PTPRR->chr12:71031853-71314623:-,protein_tyrosine_phosphatase,_receptor_type_R	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.8	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	1	2	RP11-307P5.1	6659	chr6:148268655:+	SASH1	19267	chr6:148795246:+	ONLY_REF_SPLICE	YES	0	10	1	0.23	0.0157	0.0314	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0471	TRUE	0	0	0	1	0	TRUE	ACH-000604
NB1_AUTONOMIC_GANGLIA	PPM1G--HSD17B14	90	40	PPM1G	1385	chr2:27632170:-	HSD17B14	16393	chr19:49318398:-	ONLY_REF_SPLICE	YES	434	1	0.23	0.99	0.9282	0.4125	PPM1G->chr2:27604061-27632554:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1G,HSD17B14->chr19:49316274-49339935:-,hydroxysteroid_(17-beta)_dehydrogenase_14	NB1_AUTONOMIC_GANGLIA	0.23	0.99	1.3407	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	SOS1--SLC12A1	15	25	SOS1	19865	chr2:39233553:-	SLC12A1	43521	chr15:48518673:+	ONLY_REF_SPLICE	YES	45	0	0.47	1	0.1547	0.2578	SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-,SLC12A1->chr15:48483861-48596275:+,solute_carrier_family_12_member_1	NB1_AUTONOMIC_GANGLIA	0.47	1	0.4125	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MYCN--GPN1	14	0	MYCN	3087	chr2:16082976:+	GPN1	21486	chr2:27872982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1444	0	MYCN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:16080686-16087129:+,v-myc_avian_myelocytomatosis_viral_oncogene_neuroblastoma_derived_homolog,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	NB1_AUTONOMIC_GANGLIA	1	1	0.1444	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	RBKS--MYCNUN	13	1	RBKS	11730	chr2:28050434:-	MYCNUN	20202	chr2:16075896:+	ONLY_REF_SPLICE	YES	98	1	0.12	0.93	0.1341	0.0103	RBKS->chr2:28004231-28113965:-,ribokinase,MYCNUN->chr2:16060521-16076139:+	NB1_AUTONOMIC_GANGLIA	0.12	0.93	0.1444	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	BRE--CLIP4	9	16	BRE	5581	chr2:28152775:+	CLIP4	34403	chr2:29366575:+	ONLY_REF_SPLICE	YES	94	28	0.21	0.47	0.0928	0.165	BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,CLIP4->CAP-Gly_domain_containing_linker_protein_family_member_4,chr2:29320571-29412509:+	NB1_AUTONOMIC_GANGLIA	0.21	0.47	0.2578	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	TSHZ2--RP5-955M13.4	8	10	TSHZ2	1927	chr20:51589872:+	RP5-955M13.4	20693	chr20:49617047:+	ONLY_REF_SPLICE	YES	18	0	0.5	1	0.0825	0.1031	TSHZ2->chr20:51588946-52111869:+,teashirt_zinc_finger_homeobox_2,RP5-955M13.4->chr20:49615907-49626556:+	NB1_AUTONOMIC_GANGLIA	0.5	1	0.1856	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	SOS1--SLC12A1	7	7	SOS1	19865	chr2:39233553:-	SLC12A1	44124	chr15:48519276:+	ONLY_REF_SPLICE	YES	45	10	0.24	0.58	0.0722	0.0722	SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-,SLC12A1->chr15:48483861-48596275:+,solute_carrier_family_12_member_1	NB1_AUTONOMIC_GANGLIA	0.24	0.58	0.1444	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	LBH--GAPDH	4	0	LBH	6627	chr2:30481181:+	GAPDH	13144	chr12:6643684:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0	LBH->chr2:30454397-30546596:+,limb_bud_and_heart_development,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	NB1_AUTONOMIC_GANGLIA	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	SFXN2--TRIM8	3	0	SFXN2	1144	chr10:104474438:+	TRIM8	26125	chr10:104414410:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[56131],SFXN2->chr10:104474295-104503249:+,sideroflexin_2,TRIM8->chr10:104404253-104418164:+,tripartite_motif_containing_8	NB1_AUTONOMIC_GANGLIA	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	ASCC3--CD2AP	2	0	ASCC3	1312	chr6:101328937:-	CD2AP	54524	chr6:47501338:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ASCC3->activating_signal_cointegrator_1_complex_subunit_3,chr6:100956070-101329248:-,CD2AP->CD2-associated_protein,chr6:47445525-47594999:+	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	IARS--PITPNC1	2	0	IARS	1146	chr9:95055893:-	PITPNC1	43492	chr17:65528918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	LMNB2--SF3A2	2	0	LMNB2	2464	chr19:2444402:-	SF3A2	20877	chr19:2245445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	LMNB2->chr19:2427636-2456994:-,lamin_B2,SF3A2->chr19:2236520-2248678:+,splicing_factor_3a_subunit_2	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MARK3--DHX16	2	0	MARK3	5432	chr14:103894777:+	DHX16	40698	chr6:30624869:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3,DHX16->DEAH-box_helicase_16,chr6:30620896-30640814:-	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	OAZ1--MEX3D	2	0	OAZ1	1259	chr19:2269743:+	MEX3D	9599	chr19:1556922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,MEX3D->chr19:1554668-1568057:-,mex-3_RNA_binding_family_member_D	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	RARA--TOP2B	2	0	RARA	10854	chr17:38504716:+	TOP2B	22338	chr3:25686961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,TOP2B->Oncogene{Bushman},chr3:25639475-25706398:-,topoisomerase_(DNA)_II_beta	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	RP11-440L14.1--PTAFR	2	0	RP11-440L14.1	1078	chr4:775560:-	PTAFR	11388	chr1:28477570:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RP11-440L14.1->chr4:756175-775637:-,PTAFR->chr1:28473677-28520447:-,platelet_activating_factor_receptor	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	SDCBP--CNPPD1	2	0	SDCBP	4943	chr8:59477625:+	CNPPD1	18605	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	ZFAS1--KCTD10	2	0	ZFAS1	2031	chr20:47895745:+	KCTD10	14297	chr12:109898610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	AC074363.1--B3GALT1	1	3	AC074363.1	2265	chr2:168346787:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0103	0.0309	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	NB1_AUTONOMIC_GANGLIA	1	1	0.0412	TRUE	0	4	2	6	4	TRUE	ACH-000804
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CECR7--AC008132.1	154	37	CECR7	1775	chr22:17518234:+	AC008132.1	13601	chr22:18723545:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.6993	0.4083	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.1076	TRUE	0	0	0	5	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM179B--TAF6L	110	135	TMEM179B	1113	chr11:62554999:+	TAF6L	14219	chr11:62553732:+	ONLY_REF_SPLICE	YES	189	51	0.56	0.83	1.2138	1.4896	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:+:[73],TMEM179B->chr11:62554887-62557877:+,transmembrane_protein_179B,TAF6L->TATA-box_binding_protein_associated_factor_6_like,chr11:62538775-62554814:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	0.83	2.7034	TRUE	0	1	0	1	1	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-312O7.2--C1orf147	34	9	RP11-312O7.2	2914	chr1:206135293:-	C1orf147	7050	chr1:206666409:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3752	0.0993	RP11-312O7.2->chr1:206135293-206137984:-,C1orf147->chr1:206664449-206671061:-,chromosome_1_open_reading_frame_147	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4745	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAF3--DAB1	25	4	TRAF3	1200	chr14:103244012:+	DAB1	38837	chr1:57756838:-	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.2759	0.0441	TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+,DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.32	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CECR7--AC008132.1	16	24	CECR7	1775	chr22:17518234:+	AC008132.1	15153	chr22:18727043:+	ONLY_REF_SPLICE	YES	1	2	0.98	0.95	0.1766	0.2648	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	0.98	0.4414	TRUE	0	0	0	5	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CECR7--AC008132.1	12	15	CECR7	1775	chr22:17518234:+	AC008132.1	16240	chr22:18732023:+	ONLY_REF_SPLICE	YES	1	28	0.96	0.49	0.1324	0.1655	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.96	0.2979	TRUE	0	0	0	5	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ELK2AP	9	6	PVT1	18060	chr8:129022690:+	ELK2AP	28829	chr14:106139274:-	INCL_NON_REF_SPLICE	YES	6	11	0.71	0.58	0.0993	0.0662	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ELK2AP->ELK2A,_member_of_ETS_oncogene_family,_pseudogene,Oncogene{Bushman},chr14:106138645-106139651:-	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.71	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWC2--TENM3	9	1	WWC2	1330	chr4:184020775:+	TENM3	65932	chr4:183694625:+	ONLY_REF_SPLICE	YES	3	39	0.77	0.2	0.0993	0.011	WWC2->WW_and_C2_domain_containing_2,chr4:184020446-184241930:+,TENM3->chr4:183065140-183724177:+,teneurin_transmembrane_protein_3	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.77	0.1103	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSPC1--VDR	5	11	PSPC1	1617	chr13:20356526:-	VDR	23933	chr12:48258960:-	ONLY_REF_SPLICE	YES	1	3	0.94	0.84	0.0552	0.1214	PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	0.94	0.1766	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLX4--CREBBP	4	4	SLX4	12797	chr16:3642700:-	CREBBP	27148	chr16:3860780:-	ONLY_REF_SPLICE	YES	22	66	0.27	0.11	0.0441	0.0441	SLX4->SLX4_structure-specific_endonuclease_subunit,chr16:3631182-3661599:-,CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.27	0.0882	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MCM9--MAN1A1	4	1	MCM9	17266	chr6:119177534:-	MAN1A1	40571	chr6:119515057:-	ONLY_REF_SPLICE	YES	8	133	0.38	0.04	0.0441	0.011	MCM9->chr6:119134605-119256327:-,minichromosome_maintenance_9_homologous_recombination_repair_factor,MAN1A1->chr6:119498374-119670926:-,mannosidase_alpha_class_1A_member_1	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.38	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBX4--IGL@	4	0	CBX4	4733	chr17:77808355:-	IGL@	68640	chr22:23237716:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	CBX4->Oncogene{Bushman},chr17:77806955-77813228:-,chromobox_4,IGL@->Oncogene{Bushman}	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0441	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLTC--EP400	2	0	CLTC	3805	chr17:57725027:+	EP400	67899	chr12:132516498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SBF2--SLC38A6	2	0	SBF2	16405	chr11:10011044:-	SLC38A6	85573	chr14:61545528:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,SLC38A6->chr14:61447832-61550451:+,solute_carrier_family_38_member_6	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000204
MCF7_BREAST	BCAS4--BCAS3	3102	3230	BCAS4	1280	chr20:49411710:+	BCAS3	58366	chr17:59445688:+	ONLY_REF_SPLICE	YES	250	197	0.96	0.97	35.0409	36.4868	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.96	0.97	71.5277	TRUE	0	1	1	3	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	54	3297	BCAS4	1280	chr20:49411710:+	BCAS3	54817	chr17:59430949:+	ONLY_REF_SPLICE	YES	250	154	0.93	0.96	0.61	37.2436	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.93	0.96	37.8536	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	36	3247	BCAS4	1280	chr20:49411710:+	BCAS3	55591	chr17:59431723:+	ONLY_REF_SPLICE	YES	250	216	0.93	0.94	0.4067	36.6788	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.93	0.94	37.0855	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	3	3301	BCAS4	1280	chr20:49411710:+	BCAS3	53611	chr17:59322527:+	INCL_NON_REF_SPLICE	YES	250	150	0.93	0.96	0.0339	37.2888	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.93	0.96	37.3227	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	ARFGEF2--SULF2	752	190	ARFGEF2	1121	chr20:47538547:+	SULF2	47936	chr20:46365686:-	ONLY_REF_SPLICE	YES	28	1093	0.97	0.46	8.4948	2.1463	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	MCF7_BREAST	0.46	0.97	10.6411	TRUE	0	0	1	2	0	TRUE	ACH-000019
MCF7_BREAST	RPS6KB1--VMP1	370	314	RPS6KB1	7326	chr17:57992064:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	1299	1538	0.34	0.31	4.1796	3.547	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.31	0.34	7.7266	TRUE	0	4	1	7	3	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	4	1417	BCAS4	1280	chr20:49411710:+	BCAS3	62210	chr17:59457867:+	ONLY_REF_SPLICE	YES	250	1481	0.85	0.49	0.0452	16.0067	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.49	0.85	16.0519	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	29	1192	BCAS4	1280	chr20:49411710:+	BCAS3	66978	chr17:59469338:+	ONLY_REF_SPLICE	YES	250	1538	0.83	0.44	0.3276	13.4651	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.44	0.83	13.7927	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	2	1273	BCAS4	1280	chr20:49411710:+	BCAS3	63619	chr17:59465979:+	ONLY_REF_SPLICE	YES	250	1537	0.84	0.45	0.0226	14.3801	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.45	0.84	14.4027	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RPS6KB1--VMP1	208	244	RPS6KB1	4306	chr17:57987972:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	1502	1429	0.23	0.24	2.3496	2.7563	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.23	0.24	5.1059	TRUE	0	2	1	6	1	TRUE	ACH-000019
MCF7_BREAST	TANC2--CA4	184	65	TANC2	2143	chr17:61151375:+	CA4	52881	chr17:58232675:+	ONLY_REF_SPLICE	YES	45	0	0.85	1	2.0785	0.7343	{Klijn_CCL:Breast=1},TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CA4->carbonic_anhydrase_4,chr17:58227297-58248260:+	MCF7_BREAST	0.85	1	2.8128	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	GCN1L1--MSI1	153	60	GCN1L1	2134	chr12:120628101:-	MSI1	58313	chr12:120785317:-	ONLY_REF_SPLICE	YES	180	2	0.54	0.99	1.7283	0.6778	{Klijn_CCL:Breast=1},GCN1L1->chr12:120565007-120632513:-,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	MCF7_BREAST	0.54	0.99	2.4061	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	PAPOLA--AK7	149	42	PAPOLA	2168	chr14:96968937:+	AK7	40553	chr14:96904172:+	ONLY_REF_SPLICE	YES	200	1	0.49	0.99	1.6831	0.4744	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	MCF7_BREAST	0.49	0.99	2.1575	TRUE	0	0	0	3	0	TRUE	ACH-000019
MCF7_BREAST	TXLNG--SYAP1	126	94	TXLNG	1163	chrX:16804712:+	SYAP1	18729	chrX:16753350:+	ONLY_REF_SPLICE	YES	36	593	0.86	0.27	1.4233	1.0618	LOCAL_REARRANGEMENT:+:[21091],TXLNG->chrX:16804550-16862642:+,taxilin_gamma,SYAP1->chrX:16737755-16783459:+,synapse_associated_protein_1	MCF7_BREAST	0.27	0.86	2.4851	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	POP1--MATN2	129	1	POP1	1094	chr8:99129618:+	MATN2	42063	chr8:99042690:+	ONLY_REF_SPLICE	YES	0	24	1	0.84	1.4572	0.0113	LOCAL_REARRANGEMENT:+:[80581],POP1->POP1_homolog,_ribonuclease_P/MRP_subunit,chr8:99129525-99172062:+,MATN2->chr8:98881068-99048944:+,matrilin_2	MCF7_BREAST	0.84	1	1.4685	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RPS6KB1--DIAPH3	100	77	RPS6KB1	9551	chr17:58007535:+	DIAPH3	56314	chr13:60240980:-	ONLY_REF_SPLICE	YES	921	33	0.16	0.84	1.1296	0.8698	RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3	MCF7_BREAST	0.16	0.84	1.9994	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RPS6KB1--VMP1	1	434	RPS6KB1	7326	chr17:57992064:+	VMP1	37383	chr17:57895073:+	ONLY_REF_SPLICE	YES	1299	732	0.25	0.37	0.0113	4.9026	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.25	0.37	4.9139	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	SMARCA4--CARM1	79	72	SMARCA4	9164	chr19:11097269:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	179	96	0.46	0.61	0.8924	0.8133	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MCF7_BREAST	0.46	0.61	1.7057	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	DEPDC1B--ELOVL7	75	78	DEPDC1B	9902	chr5:59934577:-	ELOVL7	32689	chr5:60053472:-	ONLY_REF_SPLICE	YES	80	13	0.66	0.92	0.8472	0.8811	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[51601],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	MCF7_BREAST	0.66	0.92	1.7283	TRUE	0	0	1	2	0	TRUE	ACH-000019
MCF7_BREAST	RPS6KB1--VMP1	1	347	RPS6KB1	5427	chr17:57990165:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	1620	1429	0.18	0.2	0.0113	3.9198	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.18	0.2	3.9311	TRUE	0	5	0	6	5	TRUE	ACH-000019
MCF7_BREAST	ADAMTS19--SLC27A6	66	60	ADAMTS19	1218	chr5:128796175:+	SLC27A6	44345	chr5:128364038:+	ONLY_REF_SPLICE	YES	30	1	0.81	0.99	0.7456	0.6778	ADAMTS19->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_19,chr5:128795958-129074376:+,SLC27A6->chr5:127873706-128369335:+,solute_carrier_family_27_member_6	MCF7_BREAST	0.81	0.99	1.4234	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ARFGEF2--SULF2	32	191	ARFGEF2	1125	chr20:47538551:+	SULF2	47936	chr20:46365686:-	INCL_NON_REF_SPLICE	YES	33	1093	0.87	0.17	0.3615	2.1576	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	MCF7_BREAST	0.17	0.87	2.5191	TRUE	0	0	1	2	0	TRUE	ACH-000019
MCF7_BREAST	AC099850.1--VMP1	58	66	AC099850.1	1994	chr17:57184952:+	VMP1	21543	chr17:57915656:+	ONLY_REF_SPLICE	YES	159	1429	0.44	0.08	0.6552	0.7456	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.08	0.44	1.4008	TRUE	0	1	1	2	1	TRUE	ACH-000019
MCF7_BREAST	ATXN7L3--FAM171A2	67	12	ATXN7L3	3094	chr17:42275388:-	FAM171A2	15777	chr17:42433956:-	ONLY_REF_SPLICE	YES	43	6	0.65	0.93	0.7568	0.1356	ATXN7L3->ataxin_7_like_3,chr17:42269173-42277481:-,FAM171A2->chr17:42430583-42441243:-,family_with_sequence_similarity_171_member_A2	MCF7_BREAST	0.65	0.93	0.8924	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RPS6KB1--VMP1	12	227	RPS6KB1	5427	chr17:57990165:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	1620	1538	0.13	0.13	0.1356	2.5642	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.13	0.13	2.6998	TRUE	0	1	0	3	0	TRUE	ACH-000019
MCF7_BREAST	ADAMTS19--SLC27A6	39	86	ADAMTS19	2493	chr5:128797450:+	SLC27A6	44345	chr5:128364038:+	ONLY_REF_SPLICE	YES	49	1	0.72	0.99	0.4406	0.9715	ADAMTS19->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_19,chr5:128795958-129074376:+,SLC27A6->chr5:127873706-128369335:+,solute_carrier_family_27_member_6	MCF7_BREAST	0.72	0.99	1.4121	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	GCN1L1--MSI1	38	64	GCN1L1	2134	chr12:120628101:-	MSI1	57256	chr12:120789203:-	ONLY_REF_SPLICE	YES	180	3	0.36	0.97	0.4293	0.723	{Klijn_CCL:Breast=1},GCN1L1->chr12:120565007-120632513:-,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	MCF7_BREAST	0.36	0.97	1.1523	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	MYO9B--FCHO1	38	55	MYO9B	2996	chr19:17213367:+	FCHO1	54568	chr19:17881234:+	ONLY_REF_SPLICE	YES	30	1	0.76	0.99	0.4293	0.6213	{Klijn_CCL:Breast=1},MYO9B->chr19:17186591-17325346:+,myosin_IXB,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	MCF7_BREAST	0.76	0.99	1.0506	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RSBN1--AP4B1-AS1	44	24	RSBN1	1767	chr1:114354332:-	AP4B1-AS1	20221	chr1:114442494:+	ONLY_REF_SPLICE	YES	42	19	0.62	0.78	0.497	0.2711	LOCAL_INVERSION:-:+:[44159],RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,AP4B1-AS1->AP4B1_antisense_RNA_1,chr1:114399257-114443859:+	MCF7_BREAST	0.62	0.78	0.7681	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	AHCYL1--RAD51C	42	6	AHCYL1	1487	chr1:110527794:+	RAD51C	32162	chr17:56811479:+	ONLY_REF_SPLICE	YES	148	308	0.24	0.13	0.4744	0.0678	{Klijn_CCL:Breast=1},AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+,RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+	MCF7_BREAST	0.13	0.24	0.5422	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	SMARCC1--EMCN	39	15	SMARCC1	5204	chr3:47779519:-	EMCN	43214	chr4:101491482:-	ONLY_REF_SPLICE	YES	88	1	0.38	0.98	0.4406	0.1694	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,EMCN->chr4:101316498-101801283:-,endomucin	MCF7_BREAST	0.38	0.98	0.61	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	TAF4--BRIP1	34	24	TAF4	2360	chr20:60639507:-	BRIP1	33209	chr17:59926617:-	ONLY_REF_SPLICE	YES	50	505	0.54	0.1	0.3841	0.2711	{Klijn_CCL:Breast=1},TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-	MCF7_BREAST	0.1	0.54	0.6552	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	MYO6--SENP6	27	35	MYO6	1232	chr6:76459140:+	SENP6	64441	chr6:76388299:+	ONLY_REF_SPLICE	YES	225	93	0.22	0.4	0.305	0.3954	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[30912],MYO6->chr6:76458909-76629254:+,myosin_VI,SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+	MCF7_BREAST	0.22	0.4	0.7004	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ABCA5--PPP4R1L	30	21	ABCA5	7553	chr17:67309233:-	PPP4R1L	52141	chr20:56847931:-	ONLY_REF_SPLICE	YES	37	40	0.58	0.56	0.3389	0.2372	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene)	MCF7_BREAST	0.56	0.58	0.5761	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--ZMYND8	30	18	BCAS4	1280	chr20:49411710:+	ZMYND8	41369	chr20:45850125:-	ONLY_REF_SPLICE	YES	250	251	0.16	0.16	0.3389	0.2033	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	MCF7_BREAST	0.16	0.16	0.5422	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	TBL1XR1--RGS17	33	5	TBL1XR1	1353	chr3:176914909:-	RGS17	34360	chr6:153365178:-	ONLY_REF_SPLICE	YES	6	0	0.86	1	0.3728	0.0565	chimerdb_pubmed{Breast carcinoma,breast cancer},TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RGS17->chr6:153325594-153452384:-,regulator_of_G-protein_signaling_17	MCF7_BREAST	0.86	1	0.4293	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	MYH9--EIF3D	28	22	MYH9	1212	chr22:36783852:-	EIF3D	47062	chr22:36922178:-	ONLY_REF_SPLICE	YES	372	60	0.12	0.45	0.3163	0.2485	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D	MCF7_BREAST	0.12	0.45	0.5648	TRUE	0	1	0	2	1	TRUE	ACH-000019
MCF7_BREAST	SULF2--PRICKLE2	30	13	SULF2	2274	chr20:46414087:-	PRICKLE2	40949	chr3:64085601:-	ONLY_REF_SPLICE	YES	252	2	0.15	0.96	0.3389	0.1469	SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	MCF7_BREAST	0.15	0.96	0.4858	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ARFGEF2--SULF2	4	106	ARFGEF2	1069	chr20:47538495:+	SULF2	47936	chr20:46365686:-	INCL_NON_REF_SPLICE	YES	34	1093	0.76	0.09	0.0452	1.1974	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	MCF7_BREAST	0.09	0.76	1.2426	TRUE	0	0	1	2	0	TRUE	ACH-000019
MCF7_BREAST	AC099850.1--VMP1	17	48	AC099850.1	1909	chr17:57184867:+	VMP1	21543	chr17:57915656:+	INCL_NON_REF_SPLICE	YES	207	1429	0.24	0.04	0.192	0.5422	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.04	0.24	0.7342	TRUE	0	1	1	2	1	TRUE	ACH-000019
MCF7_BREAST	ATP1A1--ZFP64	24	20	ATP1A1	16095	chr1:116939356:+	ZFP64	48550	chr20:50668671:-	ONLY_REF_SPLICE	YES	997	0	0.04	1	0.2711	0.2259	ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+,ZFP64->Oncogene{Bushman},ZFP64_zinc_finger_protein,chr20:50668202-50820847:-	MCF7_BREAST	0.04	1	0.497	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	NAV1--GPR37L1	21	30	NAV1	8867	chr1:201709204:+	GPR37L1	49629	chr1:202096869:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.2372	0.3389	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,GPR37L1->G_protein-coupled_receptor_37_like_1,chr1:202091986-202102720:+	MCF7_BREAST	0.98	1	0.5761	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	AC099850.1--VMP1	8	67	AC099850.1	1994	chr17:57184952:+	VMP1	19837	chr17:57911373:+	ONLY_REF_SPLICE	YES	159	843	0.32	0.08	0.0904	0.7568	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.08	0.32	0.8472	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	GATAD2B--NUP210L	21	13	GATAD2B	1243	chr1:153895209:-	NUP210L	47435	chr1:154000073:-	ONLY_REF_SPLICE	YES	6	19	0.85	0.64	0.2372	0.1469	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	MCF7_BREAST	0.64	0.85	0.3841	TRUE	0	1	0	2	1	TRUE	ACH-000019
MCF7_BREAST	TAF4--BRIP1	18	21	TAF4	2360	chr20:60639507:-	BRIP1	34337	chr17:59924581:-	ONLY_REF_SPLICE	YES	50	397	0.44	0.09	0.2033	0.2372	{Klijn_CCL:Breast=1},TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-	MCF7_BREAST	0.09	0.44	0.4405	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RPS6KB1--DIAPH3	3	79	RPS6KB1	9809	chr17:58007793:+	DIAPH3	56314	chr13:60240980:-	ONLY_REF_SPLICE	YES	944	33	0.08	0.71	0.0339	0.8924	RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3	MCF7_BREAST	0.08	0.71	0.9263	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	PDE8A--SCAND2P	21	6	PDE8A	2621	chr15:85525579:+	SCAND2P	36611	chr15:85180578:+	ONLY_REF_SPLICE	YES	21	8	0.56	0.77	0.2372	0.0678	PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SCAND2P->SCAN_domain_containing_2_pseudogene,chr15:85174682-85185695:+	MCF7_BREAST	0.56	0.77	0.305	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	SULF2--PRICKLE2	19	12	SULF2	1569	chr20:46414792:-	PRICKLE2	40949	chr3:64085601:-	ONLY_REF_SPLICE	YES	245	2	0.11	0.94	0.2146	0.1356	SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	MCF7_BREAST	0.11	0.94	0.3502	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	TTC6--RP11-356O9.1	20	4	TTC6	1162	chr14:38065213:+	RP11-356O9.1	55376	chr14:38033424:+	INCL_NON_REF_SPLICE	YES	5	1	0.83	0.96	0.2259	0.0452	LOCAL_REARRANGEMENT:+:[16722],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,RP11-356O9.1->chr14:38033252-38048330:+	MCF7_BREAST	0.83	0.96	0.2711	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ESR1--CCDC170	15	22	ESR1	3373	chr6:152023140:+	CCDC170	38747	chr6:151894309:+	ONLY_REF_SPLICE	YES	8	33	0.82	0.53	0.1694	0.2485	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	MCF7_BREAST	0.53	0.82	0.4179	TRUE	0	1	0	3	1	TRUE	ACH-000019
MCF7_BREAST	RP11-15E18.1--LPPR5	15	21	RP11-15E18.1	1209	chr17:58603862:+	LPPR5	8643	chr1:99470179:-	INCL_NON_REF_SPLICE	YES	14	0	0.72	1	0.1694	0.2372	RP11-15E18.1->chr17:58603654-58628159:+,LPPR5->chr1:99355806-99470588:-	MCF7_BREAST	0.72	1	0.4066	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	HIPK1--DENND2C	17	2	HIPK1	6780	chr1:114484081:+	DENND2C	39477	chr1:115161103:-	ONLY_REF_SPLICE	YES	253	1	0.07	0.95	0.192	0.0226	HIPK1->chr1:114471814-114520426:+,homeodomain_interacting_protein_kinase_1,DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-	MCF7_BREAST	0.07	0.95	0.2146	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	AC099850.1--VMP1	4	48	AC099850.1	1909	chr17:57184867:+	VMP1	19837	chr17:57911373:+	INCL_NON_REF_SPLICE	YES	207	843	0.2	0.06	0.0452	0.5422	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.06	0.2	0.5874	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	TANC2--CA4	2	53	TANC2	2143	chr17:61151375:+	CA4	53935	chr17:58233921:+	ONLY_REF_SPLICE	YES	45	1	0.55	0.98	0.0226	0.5987	{Klijn_CCL:Breast=1},TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CA4->carbonic_anhydrase_4,chr17:58227297-58248260:+	MCF7_BREAST	0.55	0.98	0.6213	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	UBE2E2--RP11-20B7.1	14	4	UBE2E2	3680	chr3:23258803:+	RP11-20B7.1	15371	chr3:73918927:+	ONLY_REF_SPLICE	YES	51	0	0.26	1	0.1581	0.0452	UBE2E2->chr3:23244511-23633284:+,ubiquitin_conjugating_enzyme_E2_E2,RP11-20B7.1->chr3:73857752-73952017:+	MCF7_BREAST	0.26	1	0.2033	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	GATAD2B--NUP210L	11	14	GATAD2B	1243	chr1:153895209:-	NUP210L	46276	chr1:154002530:-	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.1243	0.1581	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	MCF7_BREAST	0.81	1	0.2824	TRUE	0	0	0	3	0	TRUE	ACH-000019
MCF7_BREAST	RSBN1--AP4B1-AS1	7	26	RSBN1	1767	chr1:114354332:-	AP4B1-AS1	19099	chr1:114440490:+	ONLY_REF_SPLICE	YES	42	0	0.44	1	0.0791	0.2937	LOCAL_INVERSION:-:+:[44159],RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,AP4B1-AS1->AP4B1_antisense_RNA_1,chr1:114399257-114443859:+	MCF7_BREAST	0.44	1	0.3728	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	MYO9B--FCHO1	1	42	MYO9B	2996	chr19:17213367:+	FCHO1	54607	chr19:17881273:+	ONLY_REF_SPLICE	YES	30	1	0.59	0.98	0.0113	0.4744	{Klijn_CCL:Breast=1},MYO9B->chr19:17186591-17325346:+,myosin_IXB,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	MCF7_BREAST	0.59	0.98	0.4857	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ANKS1A--UHRF1BP1	11	1	ANKS1A	1335	chr6:34857376:+	UHRF1BP1	33692	chr6:34801994:+	ONLY_REF_SPLICE	YES	0	38	1	0.24	0.1243	0.0113	LOCAL_REARRANGEMENT:+:[6127],ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,UHRF1BP1->UHRF1_binding_protein_1,chr6:34759857-34850915:+	MCF7_BREAST	0.24	1	0.1356	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RAD51C--ATXN7	7	16	RAD51C	11155	chr17:56801461:+	ATXN7	25577	chr3:63965591:+	ONLY_REF_SPLICE	YES	435	32	0.05	0.42	0.0791	0.1807	RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+,ATXN7->ataxin_7,chr3:63850233-63989138:+	MCF7_BREAST	0.05	0.42	0.2598	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ZBTB25--RP11-973N13.2	10	3	ZBTB25	9041	chr14:64952683:-	RP11-973N13.2	22770	chr14:65067081:-	INCL_NON_REF_SPLICE	YES	34	0	0.28	1	0.113	0.0339	LOCAL_REARRANGEMENT:-:[95030],ZBTB25->chr14:64915824-64971931:-,zinc_finger_and_BTB_domain_containing_25,RP11-973N13.2->chr14:65066961-65068362:-	MCF7_BREAST	0.28	1	0.1469	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	5	22	BCAS4	1192	chr20:49411622:+	BCAS3	58427	chr17:59445749:+	INCL_NON_REF_SPLICE	YES	8	188	0.77	0.13	0.0565	0.2485	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.13	0.77	0.305	TRUE	0	1	1	3	0	TRUE	ACH-000019
MCF7_BREAST	LEMD3--RP1-74B13.2	7	11	LEMD3	5721	chr12:65612399:+	RP1-74B13.2	18520	chr12:111283403:+	ONLY_REF_SPLICE	YES	72	1	0.2	0.95	0.0791	0.1243	LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+,RP1-74B13.2->chr12:111269583-111283767:+	MCF7_BREAST	0.2	0.95	0.2034	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	COQ2--FAM175A	8	4	COQ2	12633	chr4:84182871:-	FAM175A	23283	chr4:84397832:-	INCL_NON_REF_SPLICE	YES	0	56	1	0.18	0.0904	0.0452	COQ2->chr4:84182689-84206067:-,coenzyme_Q2,_polyprenyltransferase,FAM175A->chr4:84382092-84444501:-,family_with_sequence_similarity_175_member_A	MCF7_BREAST	0.18	1	0.1356	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	ABCA5--PPP4R1L	3	21	ABCA5	7558	chr17:67309228:-	PPP4R1L	52141	chr20:56847931:-	INCL_NON_REF_SPLICE	YES	39	40	0.38	0.38	0.0339	0.2372	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene)	MCF7_BREAST	0.38	0.38	0.2711	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	C16orf45--ABCC1	6	9	C16orf45	1465	chr16:15528616:+	ABCC1	36962	chr16:16170183:+	ONLY_REF_SPLICE	YES	45	64	0.25	0.19	0.0678	0.1017	C16orf45->chr16:15528152-15718885:+,chromosome_16_open_reading_frame_45,ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+	MCF7_BREAST	0.19	0.25	0.1695	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	RP11-977B10.2--SLC16A7	7	4	RP11-977B10.2	1104	chr12:49658436:-	SLC16A7	12410	chr12:60098553:+	ONLY_REF_SPLICE	YES	0	9	1	0.55	0.0791	0.0452	RP11-977B10.2->chr12:49627352-49658539:-,SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7	MCF7_BREAST	0.55	1	0.1243	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RP11-15E18.1--LPPR5	5	11	RP11-15E18.1	1209	chr17:58603862:+	LPPR5	11249	chr1:99422297:-	ONLY_REF_SPLICE	YES	14	6	0.53	0.73	0.0565	0.1243	RP11-15E18.1->chr17:58603654-58628159:+,LPPR5->chr1:99355806-99470588:-	MCF7_BREAST	0.53	0.73	0.1808	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ARRB1--KLHL35	3	18	ARRB1	1242	chr11:75062632:-	KLHL35	31211	chr11:75136626:-	ONLY_REF_SPLICE	YES	66	57	0.24	0.27	0.0339	0.2033	LOCAL_REARRANGEMENT:-:[70565],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,KLHL35->chr11:75133438-75141674:-,kelch_like_family_member_35	MCF7_BREAST	0.24	0.27	0.2372	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ESR1--CCDC170	6	6	ESR1	3373	chr6:152023140:+	CCDC170	40065	chr6:151907024:+	ONLY_REF_SPLICE	YES	8	35	0.6	0.26	0.0678	0.0678	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	MCF7_BREAST	0.26	0.6	0.1356	TRUE	0	1	0	2	1	TRUE	ACH-000019
MCF7_BREAST	PAPOLA--AK7	2	22	PAPOLA	2168	chr14:96968937:+	AK7	41634	chr14:96909067:+	ONLY_REF_SPLICE	YES	200	1	0.11	0.96	0.0226	0.2485	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	MCF7_BREAST	0.11	0.96	0.2711	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	MYO9B--FCHO1	2	21	MYO9B	2996	chr19:17213367:+	FCHO1	54935	chr19:17881601:+	ONLY_REF_SPLICE	YES	30	13	0.43	0.64	0.0226	0.2372	{Klijn_CCL:Breast=1},MYO9B->chr19:17186591-17325346:+,myosin_IXB,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	MCF7_BREAST	0.43	0.64	0.2598	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	EIF1--KRT18	7	0	EIF1	1093	chr17:39845229:+	KRT18	8033	chr12:53342903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0791	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,KRT18->chr12:53342655-53346685:+,keratin_18	MCF7_BREAST	1	1	0.0791	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	PLCG1--TOP1	7	0	PLCG1	1076	chr20:39765675:+	TOP1	35196	chr20:39729849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0791	0	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	MCF7_BREAST	1	1	0.0791	TRUE	0	0	0	3	0	TRUE	ACH-000019
MCF7_BREAST	SMARCC1--EMCN	3	15	SMARCC1	5204	chr3:47779519:-	EMCN	42115	chr4:101505123:-	ONLY_REF_SPLICE	YES	88	0	0.17	1	0.0339	0.1694	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,EMCN->chr4:101316498-101801283:-,endomucin	MCF7_BREAST	0.17	1	0.2033	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	DEPDC1B--ELOVL7	1	22	DEPDC1B	8761	chr5:59938639:-	ELOVL7	32689	chr5:60053472:-	ONLY_REF_SPLICE	NO	98	13	0.19	0.64	0.0113	0.2485	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[51601],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	MCF7_BREAST	0.19	0.64	0.2598	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--RP5-1010E17.2	4	9	BCAS4	1280	chr20:49411710:+	RP5-1010E17.2	13441	chr20:54040148:-	ONLY_REF_SPLICE	YES	250	0	0.05	1	0.0452	0.1017	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,RP5-1010E17.2->chr20:54036874-54043735:-	MCF7_BREAST	0.05	1	0.1469	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	PNPLA7--DPH7	6	1	PNPLA7	11064	chr9:140409831:-	DPH7	42870	chr9:140450100:-	ONLY_REF_SPLICE	YES	0	143	1	0.05	0.0678	0.0113	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[4370],PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7,DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7	MCF7_BREAST	0.05	1	0.0791	TRUE	0	4	1	2	4	TRUE	ACH-000019
MCF7_BREAST	DNAAF1--KRT8	5	0	DNAAF1	17533	chr16:84211212:+	KRT8	32648	chr12:53292683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0	DNAAF1->chr16:84178865-84212373:+,dynein_(axonemal)_assembly_factor_1,KRT8->chr12:53290977-53343738:-,keratin_8	MCF7_BREAST	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	NCOA3--RP11-233E12.1	5	0	NCOA3	1163	chr20:46130763:+	RP11-233E12.1	32192	chr1:107380742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,RP11-233E12.1->chr1:107360861-107380789:+	MCF7_BREAST	1	1	0.0565	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	NAV1--GPR37L1	2	11	NAV1	8635	chr1:201708972:+	GPR37L1	49629	chr1:202096869:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0226	0.1243	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,GPR37L1->G_protein-coupled_receptor_37_like_1,chr1:202091986-202102720:+	MCF7_BREAST	0.93	1	0.1469	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	NAV1--GPR37L1	2	11	NAV1	7107	chr1:201687883:+	GPR37L1	49629	chr1:202096869:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0226	0.1243	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,GPR37L1->G_protein-coupled_receptor_37_like_1,chr1:202091986-202102720:+	MCF7_BREAST	0.93	1	0.1469	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RSBN1--DCLRE1B	4	3	RSBN1	1767	chr1:114354332:-	DCLRE1B	17045	chr1:114448091:+	INCL_NON_REF_SPLICE	YES	42	55	0.14	0.11	0.0452	0.0339	LOCAL_INVERSION:-:+:[92665],RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,DCLRE1B->DNA_cross-link_repair_1B,chr1:114447763-114456708:+	MCF7_BREAST	0.11	0.14	0.0791	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	KRT8--TMED9	4	1	KRT8	1758	chr12:53342981:-	TMED9	16708	chr5:177019206:+	INCL_NON_REF_SPLICE	NO	70	0	0.07	1	0.0452	0.0113	KRT8->chr12:53290977-53343738:-,keratin_8,TMED9->chr5:177019159-177023125:+,transmembrane_p24_trafficking_protein_9	MCF7_BREAST	0.07	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	SULF2--PRICKLE2	1	13	SULF2	1782	chr20:46414579:-	PRICKLE2	40949	chr3:64085601:-	ONLY_REF_SPLICE	YES	240	2	0.06	0.88	0.0113	0.1469	SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	MCF7_BREAST	0.06	0.88	0.1582	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	TEX14--PTPRG	4	1	TEX14	36670	chr17:56636814:-	PTPRG	43648	chr3:61734552:+	ONLY_REF_SPLICE	YES	67	8	0.07	0.38	0.0452	0.0113	TEX14->chr17:56634039-56769416:-,testis_expressed_14,PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G	MCF7_BREAST	0.07	0.38	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	ATP6C--KRT18	4	0	ATP6C	1091	chr16:2564056:+	KRT18	7002	chr12:53342903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	ATP6C->chr16:2563966-2577956:+,KRT18->chr12:53342655-53346685:+,keratin_18	MCF7_BREAST	1	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	TBL1XR1--RGS17	2	7	TBL1XR1	4339	chr3:176849151:-	RGS17	34360	chr6:153365178:-	ONLY_REF_SPLICE	YES	12	0	0.43	1	0.0226	0.0791	chimerdb_pubmed{Breast carcinoma,breast cancer},TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RGS17->chr6:153325594-153452384:-,regulator_of_G-protein_signaling_17	MCF7_BREAST	0.43	1	0.1017	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	TBL1XR1--RGS17	2	6	TBL1XR1	3252	chr3:176878659:-	RGS17	34360	chr6:153365178:-	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0226	0.0678	chimerdb_pubmed{Breast carcinoma,breast cancer},TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RGS17->chr6:153325594-153452384:-,regulator_of_G-protein_signaling_17	MCF7_BREAST	0.42	1	0.0904	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	EIF1--KRT18	3	1	EIF1	1101	chr17:39845237:+	KRT18	8032	chr12:53342902:+	INCL_NON_REF_SPLICE	YES	18	4	0.18	0.5	0.0339	0.0113	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,KRT18->chr12:53342655-53346685:+,keratin_18	MCF7_BREAST	0.18	0.5	0.0452	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ESR1--CCDC170	2	5	ESR1	2242	chr6:152011799:+	CCDC170	38747	chr6:151894309:+	ONLY_REF_SPLICE	YES	6	33	0.54	0.17	0.0226	0.0565	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	MCF7_BREAST	0.17	0.54	0.0791	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	BASP1--RP11-321E2.3	3	0	BASP1	4506	chr5:17217919:+	RP11-321E2.3	12944	chr5:17441578:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+,RP11-321E2.3->chr5:17404128-17441803:+	MCF7_BREAST	1	1	0.0339	TRUE	0	4	0	4	3	TRUE	ACH-000019
MCF7_BREAST	CNR2--H3F3B	3	0	CNR2	2237	chr1:24275893:-	H3F3B	16862	chr17:73775255:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	CNR2->Oncogene{Bushman},cannabinoid_receptor_2,chr1:24197016-24285549:-,H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-	MCF7_BREAST	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	H1FX--KRT8	3	0	H1FX	1444	chr3:129034677:-	KRT8	10695	chr12:53298744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	H1FX->H1_histone_family_member_X,chr3:129033615-129035120:-,KRT8->chr12:53290977-53343738:-,keratin_8	MCF7_BREAST	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	NUCB1--KRT18	3	0	NUCB1	4214	chr19:49409043:+	KRT18	15352	chr12:53342905:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	NUCB1->chr19:49403307-49426629:+,nucleobindin_1,KRT18->chr12:53342655-53346685:+,keratin_18	MCF7_BREAST	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	USP31--CRYL1	3	0	USP31	1633	chr16:23159959:-	CRYL1	33512	chr13:21013893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	{Klijn_CCL:Breast=1},USP31->chr16:23072727-23160591:-,ubiquitin_specific_peptidase_31,CRYL1->chr13:20977806-21099996:-,crystallin_lambda_1	MCF7_BREAST	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	ZMYND8--USP32	3	0	ZMYND8	16558	chr20:45910846:-	USP32	41833	chr17:58422969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32	MCF7_BREAST	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	AP001347.6--ANKRD20A11P	2	3	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	18278	chr21:15330506:-	ONLY_REF_SPLICE	YES	0	4	1	0.56	0.0226	0.0339	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	MCF7_BREAST	0.56	1	0.0565	TRUE	0	0	0	3	0	TRUE	ACH-000019
MCF7_BREAST	POP1--MATN2	2	2	POP1	1569	chr8:99130093:+	MATN2	42063	chr8:99042690:+	ONLY_REF_SPLICE	YES	4	24	0.5	0.14	0.0226	0.0226	LOCAL_REARRANGEMENT:+:[80581],POP1->POP1_homolog,_ribonuclease_P/MRP_subunit,chr8:99129525-99172062:+,MATN2->chr8:98881068-99048944:+,matrilin_2	MCF7_BREAST	0.14	0.5	0.0452	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	B3GNTL1--SLC9A8	1	5	B3GNTL1	14863	chr17:80914571:-	SLC9A8	37320	chr20:48494518:+	ONLY_REF_SPLICE	YES	5	47	0.55	0.11	0.0113	0.0565	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,SLC9A8->chr20:48429250-48508779:+,solute_carrier_family_9_member_A8	MCF7_BREAST	0.11	0.55	0.0678	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RP11-710F7.2--TBCK	2	1	RP11-710F7.2	1127	chr4:106853753:-	TBCK	42538	chr4:107037535:-	ONLY_REF_SPLICE	YES	8	40	0.27	0.07	0.0226	0.0113	RP11-710F7.2->chr4:106848217-106853879:-,TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-	MCF7_BREAST	0.07	0.27	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	TANC2--CA4	1	5	TANC2	1071	chr17:61086987:+	CA4	52881	chr17:58232675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.0565	{Klijn_CCL:Breast=1},TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CA4->carbonic_anhydrase_4,chr17:58227297-58248260:+	MCF7_BREAST	1	1	0.0678	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	AP3D1--PACS2	2	0	AP3D1	7156	chr19:2132470:-	PACS2	52511	chr14:105857544:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2	MCF7_BREAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	CMIP--GET4	2	0	CMIP	17550	chr16:81712233:+	GET4	40868	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	MCF7_BREAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	CSAD--NECAP1	2	0	CSAD	1126	chr12:53575010:-	NECAP1	22458	chr12:8245272:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	CSAD->chr12:53551447-53575135:-,cysteine_sulfinic_acid_decarboxylase,NECAP1->NECAP_endocytosis_associated_1,chr12:8234807-8250367:+	MCF7_BREAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	SART3--CORO1C	2	0	SART3	1558	chr12:108954619:-	CORO1C	31753	chr12:109072170:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_REARRANGEMENT:-:[83709],SART3->chr12:108916357-108955176:-,squamous_cell_carcinoma_antigen_recognized_by_T-cells_3,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	MCF7_BREAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	AP001347.6--ANKRD20A11P	1	3	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	13921	chr21:15342431:-	ONLY_REF_SPLICE	YES	0	4	1	0.5	0.0113	0.0339	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	MCF7_BREAST	0.5	1	0.0452	TRUE	0	1	0	4	1	TRUE	ACH-000019
MCF7_BREAST	PTPRG--CCDC129	1	3	PTPRG	10407	chr3:61989171:+	CCDC129	61067	chr7:31681790:+	ONLY_REF_SPLICE	YES	20	0	0.17	1	0.0113	0.0339	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,CCDC129->chr7:31553704-31698334:+,coiled-coil_domain_containing_129	MCF7_BREAST	0.17	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	B3GNTL1--SLC9A8	1	2	B3GNTL1	14863	chr17:80914571:-	SLC9A8	38403	chr20:48497461:+	ONLY_REF_SPLICE	NO	5	43	0.38	0.07	0.0113	0.0226	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,SLC9A8->chr20:48429250-48508779:+,solute_carrier_family_9_member_A8	MCF7_BREAST	0.07	0.38	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	COQ2--FAM175A	1	2	COQ2	11762	chr4:84183742:-	FAM175A	23283	chr4:84397832:-	ONLY_REF_SPLICE	NO	2	56	0.6	0.05	0.0113	0.0226	COQ2->chr4:84182689-84206067:-,coenzyme_Q2,_polyprenyltransferase,FAM175A->chr4:84382092-84444501:-,family_with_sequence_similarity_175_member_A	MCF7_BREAST	0.05	0.6	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	SGPP2--ULK4	1	2	SGPP2	2464	chr2:223339445:+	ULK4	55207	chr3:41291065:-	ONLY_REF_SPLICE	YES	5	2	0.38	0.6	0.0113	0.0226	SGPP2->chr2:223289236-223425667:+,sphingosine-1-phosphate_phosphatase_2,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	MCF7_BREAST	0.38	0.6	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	VAV3--AP4B1-AS1	1	2	VAV3	37724	chr1:108138834:-	AP4B1-AS1	48230	chr1:114440490:+	ONLY_REF_SPLICE	YES	54	0	0.05	1	0.0113	0.0226	VAV3->Oncogene{Bushman},chr1:108113782-108507766:-,vav_guanine_nucleotide_exchange_factor_3,AP4B1-AS1->AP4B1_antisense_RNA_1,chr1:114399257-114443859:+	MCF7_BREAST	0.05	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	KCND3--PPM1E	1	1	KCND3	3586	chr1:112524243:-	PPM1E	21898	chr17:57046900:+	ONLY_REF_SPLICE	YES	0	7	1	0.22	0.0113	0.0113	KCND3->chr1:112313284-112531777:-,potassium_voltage-gated_channel_subfamily_D_member_3,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	MCF7_BREAST	0.22	1	0.0226	TRUE	0	0	0	2	0	TRUE	ACH-000019
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	147	89	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	30	0	0.89	1	1.6564	1.0029	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	2.6593	TRUE	0	2	1	16	2	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	54	37	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	0	28	1	0.76	0.6085	0.4169	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	1.0254	TRUE	0	2	0	9	2	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	4	13	ABL1	1510	chr9:133589842:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	0	22	1	0.44	0.0451	0.1465	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.1916	TRUE	0	0	0	6	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR18--ARID3A	4	4	WDR18	2390	chr19:984563:+	ARID3A	17305	chr19:960092:+	ONLY_REF_SPLICE	YES	192	32	0.04	0.2	0.0451	0.0451	LOCAL_REARRANGEMENT:+:[7235],WDR18->WD_repeat_domain_18,chr19:983174-994569:+,ARID3A->AT-rich_interaction_domain_3A,chr19:925781-975939:+	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.2	0.0902	TRUE	0	0	0	1	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	2	8	ABL1	1510	chr9:133589842:+	BCR	48463	chr22:23651611:+	ONLY_REF_SPLICE	YES	0	57	1	0.15	0.0225	0.0901	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.1126	TRUE	0	1	0	5	1	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LDB1--EEF1A1P5	3	0	LDB1	4917	chr10:103870286:-	EEF1A1P5	12183	chr9:135896112:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LDB1->LIM_domain_binding_1,Oncogene{Bushman},chr10:103867317-103880210:-,EEF1A1P5->chr9:135894816-135896553:+,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_5	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--ACTG1	3	0	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	TRUE	0	0	0	11	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC41--SLC16A1	2	0	CCDC41	6519	chr12:94801793:-	SLC16A1	33780	chr1:113471974:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CCDC41->chr12:94700225-94853764:-,SLC16A1->Oncogene{Bushman},chr1:113454469-113499635:-,solute_carrier_family_16_member_1	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPRIP--PSMB1	2	0	MPRIP	4886	chr17:16981390:+	PSMB1	52877	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTC7B--CCNK	2	0	TTC7B	22197	chr14:91084273:-	CCNK	40537	chr14:99961835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TTC7B->chr14:91006932-91282823:-,tetratricopeptide_repeat_domain_7B,CCNK->chr14:99947506-100001381:+,cyclin_K	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAND6--RACGAP1	2	0	ZFAND6	12986	chr15:80415142:+	RACGAP1	39438	chr12:50386438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ZFAND6->chr15:80351910-80430735:+,zinc_finger_AN1-type_containing_6,RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000301
LI7_LIVER	SRGAP1--TMEM5	143	27	SRGAP1	1591	chr12:64238663:+	TMEM5	36592	chr12:64174799:+	ONLY_REF_SPLICE	YES	29	122	0.85	0.58	1.9948	0.3766	LOCAL_REARRANGEMENT:+:[34735],SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,TMEM5->chr12:64173583-64203338:+,transmembrane_protein_5	LI7_LIVER	0.58	0.85	2.3714	TRUE	0	1	0	1	1	TRUE	ACH-000471
LI7_LIVER	SAMM50--BPIFB4	116	45	SAMM50	3607	chr22:44360433:+	BPIFB4	38777	chr20:31688232:+	ONLY_REF_SPLICE	YES	32	0	0.83	1	1.6182	0.6277	SAMM50->SAMM50_sorting_and_assembly_machinery_component,chr22:44351301-44406411:+,BPIFB4->BPI_fold_containing_family_B_member_4,chr20:31667450-31699557:+	LI7_LIVER	0.83	1	2.2459	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	PPFIA1--SHANK2	18	10	PPFIA1	6154	chr11:70172924:+	SHANK2	84446	chr11:70412729:-	ONLY_REF_SPLICE	YES	251	14	0.1	0.67	0.2511	0.1395	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[83452],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	LI7_LIVER	0.1	0.67	0.3906	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	SHANK2--ANO1-AS2	7	1	SHANK2	36719	chr11:70505933:-	ANO1-AS2	64081	chr11:69919045:-	ONLY_REF_SPLICE	YES	12	0	0.4	1	0.0976	0.0139	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,ANO1-AS2->ANO1_antisense_RNA_2_(head_to_head),chr11:69918540-69921539:-	LI7_LIVER	0.4	1	0.1115	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	SRGAP1--TMEM5	4	4	SRGAP1	1591	chr12:64238663:+	TMEM5	38912	chr12:64178750:+	ONLY_REF_SPLICE	YES	29	112	0.22	0.07	0.0558	0.0558	LOCAL_REARRANGEMENT:+:[34735],SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,TMEM5->chr12:64173583-64203338:+,transmembrane_protein_5	LI7_LIVER	0.07	0.22	0.1116	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	SRGAP1--TMEM5	4	1	SRGAP1	1591	chr12:64238663:+	TMEM5	41567	chr12:64195871:+	ONLY_REF_SPLICE	YES	29	101	0.15	0.05	0.0558	0.0139	LOCAL_REARRANGEMENT:+:[34735],SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,TMEM5->chr12:64173583-64203338:+,transmembrane_protein_5	LI7_LIVER	0.05	0.15	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	POMP--LDHB	2	0	POMP	1084	chr13:29233324:+	LDHB	20469	chr12:21791404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	POMP->chr13:29233241-29253062:+,proteasome_maturation_protein,LDHB->chr12:21788276-21910791:-,lactate_dehydrogenase_B	LI7_LIVER	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	TCFL5--YTHDF1	2	0	TCFL5	2639	chr20:61491477:-	YTHDF1	19165	chr20:61828086:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	TCFL5->chr20:61472467-61493115:-,transcription_factor_like_5,YTHDF1->YTH_N6-methyladenosine_RNA_binding_protein_1,chr20:61826781-61847586:-	LI7_LIVER	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	ZNF217--PICALM	2	0	ZNF217	3627	chr20:52214170:-	PICALM	20656	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	LI7_LIVER	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	PPP1R13B--C14orf2	1	1	PPP1R13B	7277	chr14:104245082:-	C14orf2	34646	chr14:104381526:-	ONLY_REF_SPLICE	YES	31	6	0.06	0.25	0.0139	0.0139	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[64698],PPP1R13B->chr14:104200089-104313927:-,protein_phosphatase_1_regulatory_subunit_13B,C14orf2->chr14:104378625-104394606:-,chromosome_14_open_reading_frame_2	LI7_LIVER	0.06	0.25	0.0278	TRUE	1	0	0	2	0	TRUE	ACH-000471
LI7_LIVER	SHANK2--ANO1-AS2	1	1	SHANK2	30935	chr11:70544793:-	ANO1-AS2	64081	chr11:69919045:-	ONLY_REF_SPLICE	YES	25	0	0.07	1	0.0139	0.0139	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,ANO1-AS2->ANO1_antisense_RNA_2_(head_to_head),chr11:69918540-69921539:-	LI7_LIVER	0.07	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000471
HS618T_FIBROBLAST	VIM-AS1--PLEC	10	1	VIM-AS1	1699	chr10:17271286:-	PLEC	35963	chr8:144999221:-	INCL_NON_REF_SPLICE	YES	1	291	0.92	0.04	0.1144	0.0114	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,PLEC->chr8:144989321-145050902:-,plectin	HS618T_FIBROBLAST	0.04	0.92	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000539
HS618T_FIBROBLAST	GLUD1P3--VCL	2	0	GLUD1P3	1312	chr10:75490631:+	VCL	8593	chr10:75802841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GLUD1P3->chr10:75490320-75497069:+,glutamate_dehydrogenase_1_pseudogene_3,VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin	HS618T_FIBROBLAST	1	1	0.0229	TRUE	0	0	0	3	0	TRUE	ACH-000539
HS618T_FIBROBLAST	RP11-166D19.1--WDR19	2	0	RP11-166D19.1	5868	chr11:121971082:-	WDR19	33016	chr4:39226504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RP11-166D19.1->chr11:121899063-121987031:-,WDR19->WD_repeat_domain_19,chr4:39184024-39287430:+	HS618T_FIBROBLAST	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000539
HS618T_FIBROBLAST	SP140L--SFPQ	2	0	SP140L	2193	chr2:231193546:+	SFPQ	38811	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	SP140L->SP140_nuclear_body_protein_like,chr2:231191899-231268447:+,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	HS618T_FIBROBLAST	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000539
NIHOVCAR3_OVARY	SLC25A44--DAP3	229	125	SLC25A44	1159	chr1:156164038:+	DAP3	17521	chr1:155679564:+	ONLY_REF_SPLICE	YES	34	91	0.91	0.8	2.889	1.577	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NIHOVCAR3_OVARY	0.8	0.91	4.466	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MBP--RP11-723G8.2	151	123	MBP	10678	chr18:74778254:-	RP11-723G8.2	43134	chr18:69400083:-	ONLY_REF_SPLICE	YES	73	0	0.79	1	1.905	1.5517	MBP->chr18:74690783-74845639:-,myelin_basic_protein,RP11-723G8.2->chr18:69399851-69455364:-	NIHOVCAR3_OVARY	0.79	1	3.4567	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	FCHSD2--FAM168A	63	25	FCHSD2	16460	chr11:72598515:-	FAM168A	29774	chr11:73179537:-	ONLY_REF_SPLICE	YES	23	71	0.79	0.55	0.7948	0.3154	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A	NIHOVCAR3_OVARY	0.55	0.79	1.1102	TRUE	0	1	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	CCDC6--ANK3	56	32	CCDC6	1535	chr10:61665880:-	ANK3	50361	chr10:61898845:-	ONLY_REF_SPLICE	YES	179	15	0.33	0.85	0.7065	0.4037	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	NIHOVCAR3_OVARY	0.33	0.85	1.1102	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	SLC25A44--DAP3	20	127	SLC25A44	1159	chr1:156164038:+	DAP3	16781	chr1:155678824:+	ONLY_REF_SPLICE	YES	34	71	0.81	0.67	0.2523	1.6022	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NIHOVCAR3_OVARY	0.67	0.81	1.8545	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	SVIL--MPP7	45	26	SVIL	5350	chr10:29946898:-	MPP7	72068	chr10:28378770:-	ONLY_REF_SPLICE	YES	25	18	0.74	0.8	0.5677	0.328	SVIL->chr10:29746267-30025710:-,supervillin,MPP7->chr10:28339922-28623415:-,membrane_palmitoylated_protein_7	NIHOVCAR3_OVARY	0.74	0.8	0.8957	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	STARD10--FCHSD2	44	19	STARD10	6569	chr11:72492020:-	FCHSD2	27315	chr11:72613683:-	ONLY_REF_SPLICE	YES	50	61	0.56	0.51	0.5551	0.2397	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[43064],STARD10->StAR_related_lipid_transfer_domain_containing_10,chr11:72465774-72504726:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	NIHOVCAR3_OVARY	0.51	0.56	0.7948	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	EWSR1--ZNRF3	41	27	EWSR1	4997	chr22:29669853:+	ZNRF3	27691	chr22:29383064:+	ONLY_REF_SPLICE	YES	458	9	0.13	0.88	0.5172	0.3406	EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3	NIHOVCAR3_OVARY	0.13	0.88	0.8578	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	SLC38A1--COL2A1	39	14	SLC38A1	8733	chr12:46622936:-	COL2A1	51378	chr12:48373845:-	ONLY_REF_SPLICE	YES	269	1	0.16	0.98	0.492	0.1766	SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1,COL2A1->chr12:48366748-48398269:-,collagen_type_II_alpha_1	NIHOVCAR3_OVARY	0.16	0.98	0.6686	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	TSC2--MAPK8IP3	39	4	TSC2	1601	chr16:2098066:+	MAPK8IP3	49511	chr16:1808149:+	ONLY_REF_SPLICE	YES	0	25	1	0.63	0.492	0.0505	TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2,MAPK8IP3->chr16:1756184-1820318:+,mitogen-activated_protein_kinase_8_interacting_protein_3	NIHOVCAR3_OVARY	0.63	1	0.5425	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	SLC25A44--DAP3	2	100	SLC25A44	1159	chr1:156164038:+	DAP3	18573	chr1:155686797:+	ONLY_REF_SPLICE	YES	34	258	0.75	0.28	0.0252	1.2616	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NIHOVCAR3_OVARY	0.28	0.75	1.2868	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	ITSN2--OTOF	22	17	ITSN2	2475	chr2:24550921:-	OTOF	57921	chr2:26739467:-	ONLY_REF_SPLICE	YES	9	0	0.81	1	0.2775	0.2145	ITSN2->chr2:24425733-24583583:-,intersectin_2,OTOF->Oncogene{Bushman},chr2:26680071-26781566:-,otoferlin	NIHOVCAR3_OVARY	0.81	1	0.492	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	FBXO34--CDKN3	17	18	FBXO34	1235	chr14:55738255:+	CDKN3	14353	chr14:54866612:+	ONLY_REF_SPLICE	YES	37	22	0.49	0.61	0.2145	0.2271	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	NIHOVCAR3_OVARY	0.49	0.61	0.4416	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	NUP98--BEAN1	11	30	NUP98	1393	chr11:3818630:-	BEAN1	50933	chr16:66511463:+	ONLY_REF_SPLICE	YES	86	1	0.32	0.98	0.1388	0.3785	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,BEAN1->brain_expressed,_associated_with_NEDD4,_1,chr16:66461200-66527432:+	NIHOVCAR3_OVARY	0.32	0.98	0.5173	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	CACHD1--ROR1	15	13	CACHD1	28978	chr1:65145439:+	ROR1	41024	chr1:64516358:+	ONLY_REF_SPLICE	YES	13	4	0.68	0.88	0.1892	0.164	{Klijn_CCL:Breast=1,Ovary=1},CACHD1->cache_domain_containing_1,chr1:64936428-65158741:+,ROR1->chr1:64239693-64647181:+,receptor_tyrosine_kinase-like_orphan_receptor_1	NIHOVCAR3_OVARY	0.68	0.88	0.3532	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	CAMTA1--KCNAB2	13	11	CAMTA1	4547	chr1:6885270:+	KCNAB2	51651	chr1:6100577:+	ONLY_REF_SPLICE	YES	327	5	0.07	0.83	0.164	0.1388	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2	NIHOVCAR3_OVARY	0.07	0.83	0.3028	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	SPEN--NEU1	12	14	SPEN	24484	chr1:16265371:+	NEU1	30525	chr6:31829227:-	ONLY_REF_SPLICE	YES	126	128	0.17	0.17	0.1514	0.1766	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,NEU1->chr6:31825436-31830683:-,neuraminidase_1_(lysosomal_sialidase)	NIHOVCAR3_OVARY	0.17	0.17	0.328	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	GIGYF2--EIF4E2	14	3	GIGYF2	35151	chr2:233675579:+	EIF4E2	68619	chr2:233438703:+	INCL_NON_REF_SPLICE	YES	47	38	0.27	0.31	0.1766	0.0378	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	NIHOVCAR3_OVARY	0.27	0.31	0.2144	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	AP000769.1--FRMD8	13	0	AP000769.1	1075	chr11:65222802:+	FRMD8	11705	chr11:65167207:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.164	0	LOCAL_REARRANGEMENT:+:[41732],AP000769.1->chr11:65222728-65234028:+,FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	NIHOVCAR3_OVARY	1	1	0.164	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MSI2--RNF123	11	4	MSI2	25423	chr17:55674311:+	RNF123	52083	chr3:49734576:+	ONLY_REF_SPLICE	YES	104	38	0.13	0.28	0.1388	0.0505	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,RNF123->chr3:49726932-49758962:+,ring_finger_protein_123	NIHOVCAR3_OVARY	0.13	0.28	0.1893	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	SPEN--NEU1	9	3	SPEN	23614	chr1:16264501:+	NEU1	30525	chr6:31829227:-	ONLY_REF_SPLICE	YES	80	128	0.13	0.09	0.1135	0.0378	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,NEU1->chr6:31825436-31830683:-,neuraminidase_1_(lysosomal_sialidase)	NIHOVCAR3_OVARY	0.09	0.13	0.1513	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	CCDC6--ANK3	1	33	CCDC6	3814	chr10:61592283:-	ANK3	33623	chr10:61973268:-	ONLY_REF_SPLICE	YES	231	6	0.13	0.85	0.0126	0.4163	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	NIHOVCAR3_OVARY	0.13	0.85	0.4289	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	UBN1--UBALD1	8	4	UBN1	8794	chr16:4911103:+	UBALD1	26627	chr16:4660556:-	ONLY_REF_SPLICE	YES	21	40	0.36	0.23	0.1009	0.0505	UBN1->chr16:4896666-4932361:+,ubinuclein_1,UBALD1->UBA_like_domain_containing_1,chr16:4658884-4665028:-	NIHOVCAR3_OVARY	0.23	0.36	0.1514	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RAB11FIP4--NF1	8	1	RAB11FIP4	6818	chr17:29815290:+	NF1	32870	chr17:29483001:+	ONLY_REF_SPLICE	YES	4	32	0.69	0.22	0.1009	0.0126	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[9508],RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	NIHOVCAR3_OVARY	0.22	0.69	0.1135	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RARG--AAAS	6	7	RARG	5372	chr12:53621146:-	AAAS	18449	chr12:53714476:-	ONLY_REF_SPLICE	YES	59	136	0.18	0.09	0.0757	0.0883	LOCAL_REARRANGEMENT:-:[74476],RARG->Oncogene{Bushman},chr12:53604354-53626764:-,retinoic_acid_receptor_gamma,AAAS->aladin_WD_repeat_nucleoporin,chr12:53701240-53718648:-	NIHOVCAR3_OVARY	0.09	0.18	0.164	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	BCS1L--POLR1A	6	6	BCS1L	4916	chr2:219527402:+	POLR1A	20491	chr2:86297395:-	ONLY_REF_SPLICE	YES	66	43	0.15	0.22	0.0757	0.0757	BCS1L->BCS1_homolog,_ubiquinol-cytochrome_c_reductase_complex_chaperone,chr2:219523487-219528166:+,POLR1A->chr2:86247339-86333278:-,polymerase_(RNA)_I_subunit_A	NIHOVCAR3_OVARY	0.15	0.22	0.1514	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	ITSN2--OTOF	3	18	ITSN2	3497	chr2:24549529:-	OTOF	57921	chr2:26739467:-	ONLY_REF_SPLICE	YES	9	0	0.7	1	0.0378	0.2271	ITSN2->chr2:24425733-24583583:-,intersectin_2,OTOF->Oncogene{Bushman},chr2:26680071-26781566:-,otoferlin	NIHOVCAR3_OVARY	0.7	1	0.2649	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	CAMTA1--KCNAB2	4	13	CAMTA1	4547	chr1:6885270:+	KCNAB2	45646	chr1:6078695:+	ONLY_REF_SPLICE	YES	327	2	0.05	0.89	0.0505	0.164	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2	NIHOVCAR3_OVARY	0.05	0.89	0.2145	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	FAR2--MKX	7	0	FAR2	14495	chr12:29464883:+	MKX	32060	chr10:27964483:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0883	0	{Klijn_CCL:Ovary=1},FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2,MKX->chr10:27961804-28034989:-,mohawk_homeobox	NIHOVCAR3_OVARY	1	1	0.0883	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	TSC2--MAPK8IP3	6	4	TSC2	1601	chr16:2098066:+	MAPK8IP3	51321	chr16:1809959:+	ONLY_REF_SPLICE	YES	0	28	1	0.26	0.0757	0.0505	TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2,MAPK8IP3->chr16:1756184-1820318:+,mitogen-activated_protein_kinase_8_interacting_protein_3	NIHOVCAR3_OVARY	0.26	1	0.1262	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	TFEB--PGC	6	3	TFEB	1910	chr6:41703088:-	PGC	20468	chr6:41712546:-	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0757	0.0378	LOCAL_REARRANGEMENT:-:[452],TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C)	NIHOVCAR3_OVARY	0.75	1	0.1135	TRUE	0	1	0	1	1	TRUE	ACH-000001
NIHOVCAR3_OVARY	AC007956.1--JDP2	4	9	AC007956.1	1165	chr14:75179636:-	JDP2	9506	chr14:75904601:+	ONLY_REF_SPLICE	YES	38	10	0.25	0.57	0.0505	0.1135	AC007956.1->chr14:75158879-75179800:-,JDP2->Jun_dimerization_protein_2,Oncogene{Bushman},chr14:75894419-75940814:+	NIHOVCAR3_OVARY	0.25	0.57	0.164	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	FBXO34--CDKN3	2	16	FBXO34	1235	chr14:55738255:+	CDKN3	15436	chr14:54868242:+	ONLY_REF_SPLICE	YES	37	283	0.33	0.06	0.0252	0.2019	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	NIHOVCAR3_OVARY	0.06	0.33	0.2271	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	IL1RAPL2--TCEAL3	5	4	IL1RAPL2	1737	chrX:103811732:+	TCEAL3	19300	chrX:102863532:+	ONLY_REF_SPLICE	YES	2	99	0.82	0.08	0.0631	0.0505	IL1RAPL2->chrX:103810996-105011822:+,interleukin_1_receptor_accessory_protein_like_2,TCEAL3->chrX:102862379-102884618:+,transcription_elongation_factor_A_like_3	NIHOVCAR3_OVARY	0.08	0.82	0.1136	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RP11-973F15.1--RP11-94A24.1	5	4	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0631	0.0505	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	NIHOVCAR3_OVARY	1	1	0.1136	TRUE	0	2	0	7	2	TRUE	ACH-000001
NIHOVCAR3_OVARY	TEX2--PRICKLE2	4	4	TEX2	8557	chr17:62289934:-	PRICKLE2	31716	chr3:64184643:-	ONLY_REF_SPLICE	YES	31	1	0.21	0.89	0.0505	0.0505	TEX2->chr17:62224587-62340661:-,testis_expressed_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	NIHOVCAR3_OVARY	0.21	0.89	0.101	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	STARD10--FCHSD2	3	7	STARD10	6482	chr11:72492107:-	FCHSD2	27315	chr11:72613683:-	ONLY_REF_SPLICE	YES	27	61	0.27	0.14	0.0378	0.0883	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[43064],STARD10->StAR_related_lipid_transfer_domain_containing_10,chr11:72465774-72504726:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	NIHOVCAR3_OVARY	0.14	0.27	0.1261	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	ZBTB17--SLC22A15	3	5	ZBTB17	2237	chr1:16299534:-	SLC22A15	15148	chr1:116534652:+	ONLY_REF_SPLICE	YES	68	2	0.11	0.8	0.0378	0.0631	ZBTB17->chr1:16268364-16302627:-,zinc_finger_and_BTB_domain_containing_17,SLC22A15->chr1:116519119-116612675:+,solute_carrier_family_22_member_15	NIHOVCAR3_OVARY	0.11	0.8	0.1009	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	XXbac-BPG252P9.9--KRT7	4	0	XXbac-BPG252P9.9	1428	chr6:30691227:-	KRT7	7019	chr12:52629083:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	XXbac-BPG252P9.9->chr6:30690882-30691654:-,KRT7->chr12:52626304-52645970:+,keratin_7	NIHOVCAR3_OVARY	1	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	CCDC6--ANK3	2	7	CCDC6	1535	chr10:61665880:-	ANK3	53035	chr10:61874089:-	ONLY_REF_SPLICE	YES	179	53	0.05	0.15	0.0252	0.0883	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	NIHOVCAR3_OVARY	0.05	0.15	0.1135	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	FAM179A--BRE	2	7	FAM179A	1087	chr2:29179563:+	BRE	58424	chr2:28532949:+	ONLY_REF_SPLICE	YES	2	42	0.82	0.18	0.0252	0.0883	FAM179A->chr2:29179477-29284239:+,family_with_sequence_similarity_179_member_A,BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+	NIHOVCAR3_OVARY	0.18	0.82	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	PPARD--ANKS1A	3	3	PPARD	1124	chr6:35310458:+	ANKS1A	18649	chr6:34949467:+	ONLY_REF_SPLICE	YES	12	30	0.33	0.17	0.0378	0.0378	PPARD->Oncogene{Bushman},chr6:35310335-35395968:+,peroxisome_proliferator_activated_receptor_delta,ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+	NIHOVCAR3_OVARY	0.17	0.33	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	TSPAN9--TEAD4	3	3	TSPAN9	2166	chr12:3192885:+	TEAD4	21172	chr12:3103904:+	ONLY_REF_SPLICE	YES	28	70	0.18	0.08	0.0378	0.0378	LOCAL_REARRANGEMENT:+:[36682],TSPAN9->chr12:3186521-3395730:+,tetraspanin_9,TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+	NIHOVCAR3_OVARY	0.08	0.18	0.0756	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	SLC25A10--OGFOD3	3	1	SLC25A10	3654	chr17:79674243:+	OGFOD3	21851	chr17:80361966:-	ONLY_REF_SPLICE	YES	0	92	1	0.04	0.0378	0.0126	SLC25A10->chr17:79670401-79687569:+,chr17:79670404-79688042:+,solute_carrier_family_25_member_10,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	NIHOVCAR3_OVARY	0.04	1	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	STARD10--FCHSD2	1	9	STARD10	6569	chr11:72492020:-	FCHSD2	29483	chr11:72600990:-	ONLY_REF_SPLICE	NO	50	52	0.17	0.16	0.0126	0.1135	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[43064],STARD10->StAR_related_lipid_transfer_domain_containing_10,chr11:72465774-72504726:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	NIHOVCAR3_OVARY	0.16	0.17	0.1261	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	TMEM117--RP11-210N13.1	3	1	TMEM117	3724	chr12:44338145:+	RP11-210N13.1	18852	chr12:44132149:+	ONLY_REF_SPLICE	YES	19	0	0.17	1	0.0378	0.0126	LOCAL_REARRANGEMENT:+:[94900],TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117,RP11-210N13.1->chr12:44130431-44134870:+	NIHOVCAR3_OVARY	0.17	1	0.0504	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	PLEKHG3--MTHFD1	3	0	PLEKHG3	13277	chr14:65205573:+	MTHFD1	27446	chr14:64877808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0378	0	{Klijn_CCL:Ovary=1},PLEKHG3->chr14:65170820-65213610:+,pleckstrin_homology_and_RhoGEF_domain_containing_G3,MTHFD1->chr14:64854749-64926722:+,methylenetetrahydrofolate_dehydrogenase,_cyclohydrolase_and_formyltetrahydrofolate_synthetase_1	NIHOVCAR3_OVARY	1	1	0.0378	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	AP000769.1--FRMD8	2	3	AP000769.1	1325	chr11:65223052:+	FRMD8	11705	chr11:65167207:+	ONLY_REF_SPLICE	YES	0	44	1	0.1	0.0252	0.0378	LOCAL_REARRANGEMENT:+:[41732],AP000769.1->chr11:65222728-65234028:+,FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	NIHOVCAR3_OVARY	0.1	1	0.063	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RBM47--APBB2	2	3	RBM47	2480	chr4:40631413:-	APBB2	40544	chr4:40895428:-	ONLY_REF_SPLICE	YES	69	21	0.07	0.19	0.0252	0.0378	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NIHOVCAR3_OVARY	0.07	0.19	0.063	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	FAM179A--BRE	1	5	FAM179A	1087	chr2:29179563:+	BRE	60670	chr2:28561317:+	ONLY_REF_SPLICE	NO	2	43	0.75	0.12	0.0126	0.0631	FAM179A->chr2:29179477-29284239:+,family_with_sequence_similarity_179_member_A,BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+	NIHOVCAR3_OVARY	0.12	0.75	0.0757	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	ITGB8--AC099342.1	2	1	ITGB8	2232	chr7:20371556:+	AC099342.1	31270	chr7:20337905:+	ONLY_REF_SPLICE	YES	117	0	0.03	1	0.0252	0.0126	LOCAL_REARRANGEMENT:+:[18990],ITGB8->chr7:20370325-20455377:+,integrin_subunit_beta_8,AC099342.1->chr7:20336331-20351335:+	NIHOVCAR3_OVARY	0.03	1	0.0378	TRUE	0	5	0	1	5	TRUE	ACH-000001
NIHOVCAR3_OVARY	MED21--STK38L	2	1	MED21	7744	chr12:27199165:+	STK38L	17973	chr12:27449963:+	ONLY_REF_SPLICE	YES	1	4	0.75	0.43	0.0252	0.0126	MED21->chr12:27175479-27219276:+,mediator_complex_subunit_21,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	NIHOVCAR3_OVARY	0.43	0.75	0.0378	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MED21--STK38L	2	1	MED21	7744	chr12:27199165:+	STK38L	18653	chr12:27450643:+	ONLY_REF_SPLICE	YES	1	10	0.75	0.23	0.0252	0.0126	MED21->chr12:27175479-27219276:+,mediator_complex_subunit_21,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	NIHOVCAR3_OVARY	0.23	0.75	0.0378	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MYO9A--ZYG11B	2	1	MYO9A	25897	chr15:72226011:-	ZYG11B	71221	chr1:53245525:+	ONLY_REF_SPLICE	YES	13	10	0.19	0.23	0.0252	0.0126	{Klijn_CCL:Ovary=1},MYO9A->chr15:72114632-72410918:-,myosin_IXA,ZYG11B->chr1:53192126-53293014:+,zyg-11_family_member_B,_cell_cycle_regulator	NIHOVCAR3_OVARY	0.19	0.23	0.0378	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RP11-973F15.1--RP11-94A24.1	2	1	RP11-973F15.1	1226	chr8:123706120:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	25	0	0.11	1	0.0252	0.0126	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	NIHOVCAR3_OVARY	0.11	1	0.0378	TRUE	0	2	0	5	1	TRUE	ACH-000001
NIHOVCAR3_OVARY	AMBRA1--ARHGAP1	2	0	AMBRA1	10142	chr11:46563495:-	ARHGAP1	33828	chr11:46717706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	YOSHIHARA_TCGA_num_samples[LUAD:2],{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[82955],AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,ARHGAP1->Rho_GTPase_activating_protein_1,chr11:46698630-46722165:-	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	AP000487.5--SSPN	2	0	AP000487.5	1391	chr11:70244204:-	SSPN	16084	chr12:26377226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	AP000487.5->chr11:70218352-70244594:-,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	ATXN7--GLE1	2	0	ATXN7	10014	chr3:63965843:+	GLE1	30919	chr9:131285559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	ATXN7->ataxin_7,chr3:63850233-63989138:+,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	BMP7--RP4-800J21.3	2	0	BMP7	4289	chr20:55803285:-	RP4-800J21.3	22277	chr20:55959971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	BMP7->bone_morphogenetic_protein_7,chr20:55743804-55841685:-,RP4-800J21.3->chr20:55959216-55968118:-	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	DUSP14--TADA2A	2	0	DUSP14	1128	chr17:35850064:+	TADA2A	17459	chr17:35800606:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LOCAL_REARRANGEMENT:+:[10102],DUSP14->chr17:35849937-35873603:+,dual_specificity_phosphatase_14,TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	E2F6--SRSF11	2	0	E2F6	9912	chr2:11587753:-	SRSF11	17406	chr1:70687298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	E2F6->E2F_transcription_factor_6,Oncogene{Bushman},chr2:11584501-11606297:-,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	F2R--GNAS	2	0	F2R	1353	chr5:76012220:+	GNAS	25051	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	F2R->chr5:76011868-76031606:+,coagulation_factor_II_thrombin_receptor,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	LARP4--MFF	2	0	LARP4	17457	chr12:50848200:+	MFF	36271	chr2:228195342:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+,MFF->chr2:228189867-228222550:+,mitochondrial_fission_factor	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	LRCH2--NDUFB2	2	0	LRCH2	1380	chrX:114468256:-	NDUFB2	29814	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LRCH2->chrX:114345185-114468635:-,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_2,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MYL6--GNAS	2	0	MYL6	2462	chr12:56553406:+	GNAS	25173	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	1	0	3	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	PAK4--RYR1	2	0	PAK4	1150	chr19:39616559:+	RYR1	89700	chr19:39051753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	PEF1--RP1-197B17.3	2	0	PEF1	1056	chr1:32110442:-	RP1-197B17.3	16625	chr12:48132698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	PEF1->chr1:32095463-32110497:-,penta-EF-hand_domain_containing_1,RP1-197B17.3->chr12:48099868-48136077:+	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	PEF1--RP1-197B17.3	2	0	PEF1	1056	chr1:32110442:-	RP1-197B17.3	15308	chr12:48122670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	PEF1->chr1:32095463-32110497:-,penta-EF-hand_domain_containing_1,RP1-197B17.3->chr12:48099868-48136077:+	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	PPFIBP1--SMCO2	2	0	PPFIBP1	1935	chr12:27677298:+	SMCO2	50047	chr12:27648613:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	3	0	3	2	TRUE	ACH-000001
NIHOVCAR3_OVARY	TFEB--PGC	2	0	TFEB	1114	chr6:41703884:-	PGC	22780	chr6:41710227:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LOCAL_REARRANGEMENT:-:[452],TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C)	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	2	0	1	2	TRUE	ACH-000001
NIHOVCAR3_OVARY	TTC39C--LAMA3	2	0	TTC39C	2885	chr18:21595002:+	LAMA3	93181	chr18:21508087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[37707],TTC39C->chr18:21572737-21715574:+,tetratricopeptide_repeat_domain_39C,LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	UBAP2--C9orf24	2	0	UBAP2	6945	chr9:33996221:-	C9orf24	42037	chr9:34379730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,C9orf24->chr9:34379017-34397830:-,chromosome_9_open_reading_frame_24	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	UBN1--UBALD1	2	0	UBN1	8645	chr16:4910954:+	UBALD1	26627	chr16:4660556:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	UBN1->chr16:4896666-4932361:+,ubinuclein_1,UBALD1->UBA_like_domain_containing_1,chr16:4658884-4665028:-	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	DNAH17--RBFOX3	1	1	DNAH17	23734	chr17:76521091:-	RBFOX3	94993	chr17:77102870:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0126	0.0126	DNAH17->chr17:76419778-76573476:-,dynein_axonemal_heavy_chain_17,RBFOX3->RNA_binding_protein,_fox-1_homolog_3,chr17:77085427-77613550:-	NIHOVCAR3_OVARY	0.5	1	0.0252	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	ITSN2--OTOF	1	1	ITSN2	2475	chr2:24550921:-	OTOF	59103	chr2:26726713:-	ONLY_REF_SPLICE	NO	9	8	0.18	0.2	0.0126	0.0126	ITSN2->chr2:24425733-24583583:-,intersectin_2,OTOF->Oncogene{Bushman},chr2:26680071-26781566:-,otoferlin	NIHOVCAR3_OVARY	0.18	0.2	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MYO9A--ZYG11B	1	1	MYO9A	24656	chr15:72227682:-	ZYG11B	71221	chr1:53245525:+	ONLY_REF_SPLICE	YES	10	10	0.17	0.17	0.0126	0.0126	{Klijn_CCL:Ovary=1},MYO9A->chr15:72114632-72410918:-,myosin_IXA,ZYG11B->chr1:53192126-53293014:+,zyg-11_family_member_B,_cell_cycle_regulator	NIHOVCAR3_OVARY	0.17	0.17	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RAB11FIP4--NF1	1	1	RAB11FIP4	6978	chr17:29815450:+	NF1	32870	chr17:29483001:+	ONLY_REF_SPLICE	NO	9	32	0.18	0.06	0.0126	0.0126	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[9508],RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	NIHOVCAR3_OVARY	0.06	0.18	0.0252	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RP1-90G24.10--SLC5A1	1	1	RP1-90G24.10	2274	chr22:32603263:+	SLC5A1	19997	chr22:32495170:+	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0126	0.0126	LOCAL_REARRANGEMENT:+:[92086],RP1-90G24.10->chr22:32601102-32665653:+,SLC5A1->chr22:32439019-32509016:+,solute_carrier_family_5_member_1	NIHOVCAR3_OVARY	0.29	1	0.0252	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	TFEB--PGC	1	1	TFEB	4611	chr6:41700387:-	PGC	22780	chr6:41710227:-	ONLY_REF_SPLICE	NO	3	7	0.4	0.22	0.0126	0.0126	LOCAL_REARRANGEMENT:-:[452],TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C)	NIHOVCAR3_OVARY	0.22	0.4	0.0252	TRUE	0	1	0	1	1	TRUE	ACH-000001
NCIH69_LUNG	PAWR--GNS	166	79	PAWR	2369	chr12:80083509:-	GNS	30402	chr12:65146537:-	ONLY_REF_SPLICE	YES	50	84	0.83	0.74	1.7302	0.8234	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,GNS->chr12:65107225-65153227:-,glucosamine_(N-acetyl)-6-sulfatase	NCIH69_LUNG	0.74	0.83	2.5536	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	FSTL4--ZNF608	65	24	FSTL4	4787	chr5:132902877:-	ZNF608	33676	chr5:124036962:-	ONLY_REF_SPLICE	YES	32	91	0.74	0.49	0.6775	0.2502	FSTL4->chr5:132532147-132948255:-,follistatin_like_4,ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608	NCIH69_LUNG	0.49	0.74	0.9277	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ZNF608--GUSBP3	54	38	ZNF608	4819	chr5:124079777:-	GUSBP3	22028	chr5:68976626:-	ONLY_REF_SPLICE	YES	80	200	0.53	0.32	0.5628	0.3961	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,GUSBP3->chr5:68790040-69006341:-,glucuronidase,_beta_pseudogene_3	NCIH69_LUNG	0.32	0.53	0.9589	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	GUSBP1--FSTL4	45	30	GUSBP1	1144	chr5:21342085:+	FSTL4	25048	chr5:132736678:-	ONLY_REF_SPLICE	YES	29	32	0.72	0.7	0.469	0.3127	GUSBP1->chr5:21341942-21589481:+,glucuronidase,_beta_pseudogene_1,FSTL4->chr5:132532147-132948255:-,follistatin_like_4	NCIH69_LUNG	0.7	0.72	0.7817	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	AC079117.1--ASB3	41	20	AC079117.1	3232	chr2:77217052:+	ASB3	13929	chr2:53956707:-	ONLY_REF_SPLICE	YES	0	21	1	0.74	0.4273	0.2085	AC079117.1->chr2:77213091-77236917:+,ASB3->ankyrin_repeat_and_SOCS_box_containing_3,chr2:53897430-54087297:-	NCIH69_LUNG	0.74	1	0.6358	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	TEX41--AC079117.1	40	6	TEX41	34486	chr2:145929698:+	AC079117.1	43905	chr2:77214532:+	ONLY_REF_SPLICE	YES	5	0	0.9	1	0.4169	0.0625	TEX41->chr2:145425534-145940216:+,testis_expressed_41_(non-protein_coding),AC079117.1->chr2:77213091-77236917:+	NCIH69_LUNG	0.9	1	0.4794	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ASB3--MYCNUN	18	10	ASB3	10163	chr2:53941521:-	MYCNUN	19250	chr2:16075896:+	ONLY_REF_SPLICE	YES	22	0	0.56	1	0.1876	0.1042	ASB3->ankyrin_repeat_and_SOCS_box_containing_3,chr2:53897430-54087297:-,MYCNUN->chr2:16060521-16076139:+	NCIH69_LUNG	0.56	1	0.2918	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ZNF608--GUSBP3	15	6	ZNF608	1275	chr5:124084226:-	GUSBP3	22028	chr5:68976626:-	ONLY_REF_SPLICE	YES	49	200	0.3	0.1	0.1563	0.0625	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,GUSBP3->chr5:68790040-69006341:-,glucuronidase,_beta_pseudogene_3	NCIH69_LUNG	0.1	0.3	0.2188	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	PAWR--GNS	2	52	PAWR	2369	chr12:80083509:-	GNS	31462	chr12:65141698:-	ONLY_REF_SPLICE	YES	50	72	0.52	0.43	0.0208	0.542	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,GNS->chr12:65107225-65153227:-,glucosamine_(N-acetyl)-6-sulfatase	NCIH69_LUNG	0.43	0.52	0.5628	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	BICD1--AC016629.3	12	7	BICD1	6764	chr12:32459056:+	AC016629.3	25418	chr19:59110720:-	INCL_NON_REF_SPLICE	YES	104	0	0.15	1	0.1251	0.073	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,AC016629.3->chr19:59105263-59110722:-	NCIH69_LUNG	0.15	1	0.1981	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	TMEM163--AC073928.2	11	4	TMEM163	4523	chr2:135308141:-	AC073928.2	17771	chr2:140889383:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1147	0.0417	TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163,AC073928.2->chr2:140861152-140889349:-	NCIH69_LUNG	1	1	0.1564	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ANP32B--PTMS	9	0	ANP32B	9252	chr9:100774754:+	PTMS	16988	chr12:6879139:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0938	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH69_LUNG	1	1	0.0938	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ZNF608--GUSBP3	1	30	ZNF608	4819	chr5:124079777:-	GUSBP3	23062	chr5:68975127:-	ONLY_REF_SPLICE	NO	80	302	0.28	0.09	0.0104	0.3127	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,GUSBP3->chr5:68790040-69006341:-,glucuronidase,_beta_pseudogene_3	NCIH69_LUNG	0.09	0.28	0.3231	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ZNF608--GUSBP3	5	13	ZNF608	4490	chr5:124080106:-	GUSBP3	22028	chr5:68976626:-	ONLY_REF_SPLICE	YES	109	200	0.14	0.08	0.0521	0.1355	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,GUSBP3->chr5:68790040-69006341:-,glucuronidase,_beta_pseudogene_3	NCIH69_LUNG	0.08	0.14	0.1876	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	FSTL4--ZNF608	3	18	FSTL4	2376	chr5:132939549:-	ZNF608	33676	chr5:124036962:-	ONLY_REF_SPLICE	YES	24	91	0.47	0.19	0.0313	0.1876	FSTL4->chr5:132532147-132948255:-,follistatin_like_4,ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608	NCIH69_LUNG	0.19	0.47	0.2189	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	GNG4--ARID4B	3	9	GNG4	8571	chr1:235713384:-	ARID4B	44198	chr1:235331967:-	INCL_NON_REF_SPLICE	YES	62	40	0.16	0.23	0.0313	0.0938	GNG4->G_protein_subunit_gamma_4,chr1:235710987-235814054:-,ARID4B->AT-rich_interaction_domain_4B,chr1:235294949-235491534:-	NCIH69_LUNG	0.16	0.23	0.1251	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	KANSL1--RP11-707O23.5	5	1	KANSL1	8599	chr17:44230270:-	RP11-707O23.5	32091	chr17:43679427:-	INCL_NON_REF_SPLICE	YES	101	4	0.06	0.6	0.0521	0.0104	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,RP11-707O23.5->chr17:43678235-43679706:-	NCIH69_LUNG	0.06	0.6	0.0625	TRUE	0	1	0	2	0	TRUE	ACH-000358
NCIH69_LUNG	BICD1--AC016629.3	4	4	BICD1	6764	chr12:32459056:+	AC016629.3	25511	chr19:59110627:-	INCL_NON_REF_SPLICE	YES	104	0	0.07	1	0.0417	0.0417	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,AC016629.3->chr19:59105263-59110722:-	NCIH69_LUNG	0.07	1	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	TMEM163--AC073928.2	4	1	TMEM163	4523	chr2:135308141:-	AC073928.2	18944	chr2:140874013:-	ONLY_REF_SPLICE	YES	0	4	1	0.56	0.0417	0.0104	TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163,AC073928.2->chr2:140861152-140889349:-	NCIH69_LUNG	0.56	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	BICD1--AC016629.3	4	0	BICD1	6764	chr12:32459056:+	AC016629.3	26672	chr19:59109183:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,AC016629.3->chr19:59105263-59110722:-	NCIH69_LUNG	1	1	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ASB3--MYCNUN	1	10	ASB3	10163	chr2:53941521:-	MYCNUN	18120	chr2:16061690:+	ONLY_REF_SPLICE	YES	22	1	0.33	0.92	0.0104	0.1042	ASB3->ankyrin_repeat_and_SOCS_box_containing_3,chr2:53897430-54087297:-,MYCNUN->chr2:16060521-16076139:+	NCIH69_LUNG	0.33	0.92	0.1146	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	TMEM163--AC073928.2	3	1	TMEM163	4523	chr2:135308141:-	AC073928.2	18947	chr2:140874010:-	INCL_NON_REF_SPLICE	YES	0	2	1	0.67	0.0313	0.0104	TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163,AC073928.2->chr2:140861152-140889349:-	NCIH69_LUNG	0.67	1	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ABL1--MED27	3	0	ABL1	1510	chr9:133589842:+	MED27	25857	chr9:134769379:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	NCIH69_LUNG	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ANP32B--PTMS	3	0	ANP32B	6936	chr9:100767435:+	PTMS	17187	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH69_LUNG	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	FAM60A--GNAS	3	0	FAM60A	2035	chr12:31478958:-	GNAS	34764	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH69_LUNG	1	1	0.0313	TRUE	0	0	0	2	0	TRUE	ACH-000358
NCIH69_LUNG	AGPS--TEX41	2	1	AGPS	1406	chr2:178257777:+	TEX41	63582	chr2:145929565:+	ONLY_REF_SPLICE	YES	55	1	0.05	0.75	0.0208	0.0104	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,TEX41->chr2:145425534-145940216:+,testis_expressed_41_(non-protein_coding)	NCIH69_LUNG	0.05	0.75	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	TMEM163--AC073928.2	2	1	TMEM163	4523	chr2:135308141:-	AC073928.2	19998	chr2:140871673:-	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.0208	0.0104	TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163,AC073928.2->chr2:140861152-140889349:-	NCIH69_LUNG	0.5	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	CMPK1--ZNF436	2	0	CMPK1	1320	chr1:47799788:+	ZNF436	16457	chr1:23689714:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CMPK1->chr1:47799469-47844511:+,cytidine/uridine_monophosphate_kinase_1,ZNF436->chr1:23685941-23695935:-,zinc_finger_protein_436	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	CPSF2--PKHD1L1	2	0	CPSF2	3657	chr14:92597477:+	PKHD1L1	63502	chr8:110461567:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CPSF2->chr14:92588281-92630755:+,cleavage_and_polyadenylation_specific_factor_2,PKHD1L1->chr8:110374706-110542559:+,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)-like_1	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	CTB-161M19.4--UBE2D2	2	0	CTB-161M19.4	1085	chr5:118406501:-	UBE2D2	14099	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CTB-161M19.4->chr5:118342042-118406585:-,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ETFA--TIAL1	2	0	ETFA	10669	chr15:76566753:-	TIAL1	27320	chr10:121347760:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	ETFA->chr15:76507696-76603813:-,electron_transfer_flavoprotein_alpha_subunit,TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	FGD4--FCF1	2	0	FGD4	3899	chr12:32655272:+	FCF1	42611	chr14:75199434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,FCF1->FCF1_rRNA-processing_protein,chr14:75179847-75203394:+	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	G2E3--KIAA0391	2	0	G2E3	1150	chr14:31028478:+	KIAA0391	36536	chr14:35735933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+,KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	LONP2--PHF20	2	0	LONP2	14033	chr16:48368269:+	PHF20	32807	chr20:34389413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LONP2->chr16:48278207-48397033:+,lon_peptidase_2,_peroxisomal,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	LRP12--RIMS2	2	0	LRP12	1206	chr8:105601047:-	RIMS2	54448	chr8:105160835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	PLEKHA1--KNTC1	2	0	PLEKHA1	20904	chr10:124184475:+	KNTC1	68788	chr12:123078823:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	SSBP2--PPP1CB	2	0	SSBP2	1817	chr5:81046800:-	PPP1CB	39666	chr2:29006773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	TYMS--CLNK	2	0	TYMS	4286	chr18:662320:+	CLNK	33515	chr4:10515221:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,CLNK->chr4:10488019-10686489:-,cytokine_dependent_hematopoietic_cell_linker	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH441_LUNG	EIF2AK2--SULT6B1	589	222	EIF2AK2	4529	chr2:37373996:-	SULT6B1	38020	chr2:37398733:-	ONLY_REF_SPLICE	YES	54	0	0.94	1	4.9141	1.8522	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[10755],EIF2AK2->Oncogene{Bushman},chr2:37326353-37384208:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_2,SULT6B1->chr2:37394963-37423741:-,sulfotransferase_family_6B_member_1	NCIH441_LUNG	0.94	1	6.7663	TRUE	0	0	0	2	0	TRUE	ACH-000638
NCIH441_LUNG	KIF23--GLCE	49	24	KIF23	6113	chr15:69715668:+	GLCE	29760	chr15:69548133:+	ONLY_REF_SPLICE	YES	104	22	0.41	0.77	0.4088	0.2002	KIF23->chr15:69706585-69740764:+,kinesin_family_member_23,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	NCIH441_LUNG	0.41	0.77	0.609	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	TSPAN14--TMEM254	45	17	TSPAN14	6789	chr10:82249070:+	TMEM254	36132	chr10:81841597:+	ONLY_REF_SPLICE	YES	64	14	0.49	0.82	0.3754	0.1418	TSPAN14->chr10:82213922-82292879:+,tetraspanin_14,TMEM254->chr10:81838402-81852313:+,transmembrane_protein_254	NCIH441_LUNG	0.49	0.82	0.5172	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	ANKRD12--SOGA2	44	8	ANKRD12	11771	chr18:9221997:+	SOGA2	41069	chr18:8783528:+	ONLY_REF_SPLICE	YES	12	8	0.81	0.87	0.3671	0.0667	ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+,SOGA2->chr18:8705659-8832776:+	NCIH441_LUNG	0.81	0.87	0.4338	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	MEAF6--SCMH1	38	13	MEAF6	3617	chr1:37974879:-	SCMH1	22318	chr1:41582682:-	ONLY_REF_SPLICE	YES	164	40	0.24	0.56	0.317	0.1085	{Klijn_CCL:Lung=1},MEAF6->MYST/Esa1_associated_factor_6,chr1:37958176-37980375:-,SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila)	NCIH441_LUNG	0.24	0.56	0.4255	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	PCNX--PLEKHD1	40	5	PCNX	23221	chr14:71495508:+	PLEKHD1	61212	chr14:69968451:+	ONLY_REF_SPLICE	YES	17	2	0.73	0.96	0.3337	0.0417	PCNX->chr14:71374122-71582099:+,PLEKHD1->chr14:69951409-69995215:+,pleckstrin_homology_and_coiled-coil_domain_containing_D1	NCIH441_LUNG	0.73	0.96	0.3754	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	RELA--PCNXL3	22	10	RELA	4429	chr11:65427137:-	PCNXL3	13626	chr11:65384721:+	ONLY_REF_SPLICE	YES	278	73	0.1	0.3	0.1835	0.0834	LOCAL_INVERSION:-:+:[16157],RELA->Oncogene{Bushman},RELA_proto-oncogene,_NF-kB_subunit,chr11:65421067-65430565:-,PCNXL3->chr11:65383244-65404910:+	NCIH441_LUNG	0.1	0.3	0.2669	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	EIF2AK2--SULT6B1	7	41	EIF2AK2	4529	chr2:37373996:-	SULT6B1	39177	chr2:37395208:-	ONLY_REF_SPLICE	YES	54	105	0.47	0.31	0.0584	0.3421	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[10755],EIF2AK2->Oncogene{Bushman},chr2:37326353-37384208:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_2,SULT6B1->chr2:37394963-37423741:-,sulfotransferase_family_6B_member_1	NCIH441_LUNG	0.31	0.47	0.4005	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	LRRC8C--RHOT1	13	6	LRRC8C	1251	chr1:90098881:+	RHOT1	24001	chr17:30498062:+	ONLY_REF_SPLICE	YES	0	54	1	0.26	0.1085	0.0501	LRRC8C->chr1:90098631-90235462:+,leucine-rich_repeat_containing_8_family_member_C,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	NCIH441_LUNG	0.26	1	0.1586	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	RELA--RNASEH2C	13	3	RELA	2408	chr11:65429158:-	RNASEH2C	16424	chr11:65482788:-	ONLY_REF_SPLICE	YES	246	5	0.06	0.76	0.1085	0.025	LOCAL_REARRANGEMENT:-:[51802],RELA->Oncogene{Bushman},RELA_proto-oncogene,_NF-kB_subunit,chr11:65421067-65430565:-,RNASEH2C->chr11:65482367-65488418:-,ribonuclease_H2_subunit_C	NCIH441_LUNG	0.06	0.76	0.1335	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	MATR3--GUSBP2	7	0	MATR3	2720	chr5:138611839:+	GUSBP2	37203	chr6:26856976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0584	0	MATR3->chr5:138609441-138667360:+,matrin_3,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	NCIH441_LUNG	1	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	FHIT--RP11-451B8.1	4	4	FHIT	6726	chr3:61027719:-	RP11-451B8.1	25979	chr3:87780900:-	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0334	0.0334	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,RP11-451B8.1->chr3:87780552-87842779:-	NCIH441_LUNG	0.42	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	UBR4--CAPZB	5	0	UBR4	72084	chr1:19430578:-	CAPZB	107885	chr1:19671746:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	{Klijn_CCL:Colo-Rectal=1},UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	NCIH441_LUNG	1	1	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	KRT80--KRT15	4	0	KRT80	1362	chr12:52585423:-	KRT15	19263	chr17:39672508:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	KRT80->chr12:52562780-52585784:-,keratin_80,KRT15->chr17:39669995-39678781:-,keratin_15	NCIH441_LUNG	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	KIF23--GLCE	2	5	KIF23	5219	chr15:69714774:+	GLCE	29760	chr15:69548133:+	ONLY_REF_SPLICE	YES	77	22	0.08	0.24	0.0167	0.0417	KIF23->chr15:69706585-69740764:+,kinesin_family_member_23,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	NCIH441_LUNG	0.08	0.24	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	PIAS3--AP3M2	3	0	PIAS3	5541	chr1:145580322:+	AP3M2	25086	chr8:42027578:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	PIAS3->Oncogene{Bushman},chr1:145575233-145586546:+,protein_inhibitor_of_activated_STAT_3,AP3M2->Oncogene{Bushman},adaptor_related_protein_complex_3_mu_2_subunit,chr8:42010464-42029191:+	NCIH441_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	LRRC8C--RHOT1	1	6	LRRC8C	1251	chr1:90098881:+	RHOT1	24005	chr17:30498066:+	ONLY_REF_SPLICE	YES	0	49	1	0.12	0.0083	0.0501	LRRC8C->chr1:90098631-90235462:+,leucine-rich_repeat_containing_8_family_member_C,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	NCIH441_LUNG	0.12	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	CAPN8--EIF3H	2	0	CAPN8	1325	chr1:223853112:-	EIF3H	35994	chr8:117671219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	CAPN8->calpain_8,chr1:223711349-223853436:-,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	CLIC4--GRHL3	2	0	CLIC4	1269	chr1:25072116:+	GRHL3	16925	chr1:24657916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,GRHL3->chr1:24645812-24690972:+,grainyhead_like_transcription_factor_3	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	DNAJC27-AS1--PRIM2	2	0	DNAJC27-AS1	1843	chr2:25195101:+	PRIM2	28178	chr6:57372288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	DNAJC27-AS1->DNAJC27_antisense_RNA_1,chr2:25194259-25262563:+,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	FANCA--URAHP	2	0	FANCA	4240	chr16:89877115:-	URAHP	44436	chr16:90113504:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-,URAHP->chr16:90106169-90114181:-,urate_(hydroxyiso-)_hydrolase,_pseudogene	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	FBXO32--ZHX1	2	0	FBXO32	4717	chr8:124544138:-	ZHX1	22862	chr8:124279626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	FBXO32->F-box_protein_32,chr8:124510129-124553446:-,ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	GOLM1--NAA35	2	0	GOLM1	7513	chr9:88667452:-	NAA35	32119	chr9:88611314:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_v2:{count=2;pct=0.02%;dist=Minor_Salivary_Gland=1,Testis=1},LOCAL_INVERSION:-:+:[3848],GOLM1->chr9:88641061-88715088:-,golgi_membrane_protein_1,NAA35->N(alpha)-acetyltransferase_35,_NatC_auxiliary_subunit,chr9:88556061-88637213:+	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	ITCH--RAC1	2	0	ITCH	20088	chr20:33065665:+	RAC1	39204	chr7:6438293:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx&tcga_normals:1/3694=0.03%,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,RAC1->ArcherDX_panel,FoundationOne_panel,chr7:6414154-6443608:+,ras-related_C3_botulinum_toxin_substrate_1_(rho_family,_small_GTP_binding_protein_Rac1)	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	MATR3--GUSBP2	2	0	MATR3	2720	chr5:138611839:+	GUSBP2	39437	chr6:26853222:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	MATR3->chr5:138609441-138667360:+,matrin_3,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	MLLT4--FAM120B	2	0	MLLT4	25107	chr6:168325771:+	FAM120B	57396	chr6:170697375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	NCEH1--ECT2	2	0	NCEH1	1372	chr3:172428637:-	ECT2	15619	chr3:172472299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	LOCAL_INVERSION:-:+:[39464],NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,ECT2->Oncogene{Bushman},chr3:172468472-172539264:+,epithelial_cell_transforming_2	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	NCK1--STAG1	2	0	NCK1	1112	chr3:136581161:+	STAG1	22252	chr3:136261037:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	RPL30--FAM118B	2	0	RPL30	2527	chr8:99057171:-	FAM118B	22253	chr11:126132015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,FAM118B->chr11:126081309-126132881:+,family_with_sequence_similarity_118_member_B	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	S100A6--PHTF2	2	0	S100A6	2043	chr1:153507678:-	PHTF2	6905	chr7:77469538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	SCNN1A--CCNDBP1	2	0	SCNN1A	4236	chr12:6483534:-	CCNDBP1	21984	chr15:43482523:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	SCNN1A->chr12:6456009-6486896:-,sodium_channel_epithelial_1_alpha_subunit,CCNDBP1->chr15:43477316-43487396:+,cyclin_D1_binding_protein_1	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	SIPA1L3--LUC7L	2	0	SIPA1L3	17292	chr19:38621412:+	LUC7L	45683	chr16:258187:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,LUC7L->LUC7_like,chr16:238968-279462:-	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	SMCO4--ME3	2	0	SMCO4	4410	chr11:93232442:-	ME3	14943	chr11:86219909:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	SMCO4->chr11:93211638-93276674:-,single-pass_membrane_protein_with_coiled-coil_domains_4,ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	SPATA6--MAST2	2	0	SPATA6	17065	chr1:48821342:-	MAST2	28511	chr1:46290105:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	TEX9--WHSC1	2	0	TEX9	1270	chr15:56536476:+	WHSC1	28605	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	TEX9->chr15:56536207-56738195:+,testis_expressed_9,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	THEM4--S100A10	2	0	THEM4	1449	chr1:151881836:-	S100A10	16148	chr1:151958727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	LOCAL_REARRANGEMENT:-:[73107],THEM4->chr1:151846060-151882284:-,thioesterase_superfamily_member_4,S100A10->Oncogene{Bushman},S100_calcium_binding_protein_A10,chr1:151955391-151966866:-	NCIH441_LUNG	1	1	0.0167	TRUE	0	2	0	1	2	TRUE	ACH-000638
NCIH441_LUNG	TM7SF3--PLEKHA5	2	0	TM7SF3	1357	chr12:27167011:-	PLEKHA5	31237	chr12:19406874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	TRA2B--ARHGAP32	2	0	TRA2B	1312	chr3:185655613:-	ARHGAP32	29548	chr11:128936763:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),ARHGAP32->Rho_GTPase_activating_protein_32,chr11:128834955-129149219:-	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	USMG5--YME1L1	2	0	USMG5	4193	chr10:105151948:-	YME1L1	22101	chr10:27415715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	USMG5->chr10:105148798-105156223:-,up-regulated_during_skeletal_muscle_growth_5_homolog_(mouse),YME1L1->YME1_like_1_ATPase,chr10:27399383-27444195:-	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	USP10--FHL2	2	0	USP10	1134	chr16:84733717:+	FHL2	29013	chr2:106002997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,FHL2->Oncogene{Bushman},chr2:105974169-106054970:-,four_and_a_half_LIM_domains_2	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	ZDHHC9--THOC2	2	0	ZDHHC9	2953	chrX:128975755:-	THOC2	26157	chrX:122805612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	ZDHHC9->chrX:128937264-128977885:-,zinc_finger_DHHC-type_containing_9,THOC2->THO_complex_2,chrX:122734412-122866906:-	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	TSPAN14--TMEM254	1	2	TSPAN14	1206	chr10:82214127:+	TMEM254	36132	chr10:81841597:+	ONLY_REF_SPLICE	YES	0	14	1	0.18	0.0083	0.0167	TSPAN14->chr10:82213922-82292879:+,tetraspanin_14,TMEM254->chr10:81838402-81852313:+,transmembrane_protein_254	NCIH441_LUNG	0.18	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	CRLF3--MYO18A	1	1	CRLF3	6354	chr17:29124329:-	MYO18A	23881	chr17:27494039:-	ONLY_REF_SPLICE	NO	27	9	0.07	0.18	0.0083	0.0083	CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	NCIH441_LUNG	0.07	0.18	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	FAM13B--DPCR1	1	1	FAM13B	8313	chr5:137353991:-	DPCR1	33621	chr6:30916324:+	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.0083	0.0083	FAM13B->chr5:137273649-137387650:-,family_with_sequence_similarity_13_member_B,DPCR1->chr6:30908749-30921998:+,diffuse_panbronchiolitis_critical_region_1	NCIH441_LUNG	0.08	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000638
G292CLONEA141B1_BONE	ANPEP--AP3S2	1662	189	ANPEP	1630	chr15:90358004:-	AP3S2	31622	chr15:90380954:-	ONLY_REF_SPLICE	YES	63	74	0.97	0.96	14.8382	1.6874	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[15198],ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,AP3S2->adaptor_related_protein_complex_3_sigma_2_subunit,chr15:90373831-90437574:-	G292CLONEA141B1_BONE	0.96	0.97	16.5256	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	GNS--ZFC3H1	676	169	GNS	11844	chr12:65130784:-	ZFC3H1	27226	chr12:72054207:-	ONLY_REF_SPLICE	YES	845	24	0.5	0.97	6.0353	1.5088	GNS->chr12:65107225-65153227:-,glucosamine_(N-acetyl)-6-sulfatase,ZFC3H1->chr12:72003252-72061505:-,zinc_finger_C3H1-type_containing	G292CLONEA141B1_BONE	0.5	0.97	7.5441	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MORF4L1--CTD-2147F2.1	691	15	MORF4L1	5376	chr15:79165399:+	CTD-2147F2.1	25179	chr15:97954422:+	ONLY_REF_SPLICE	YES	35	0	0.95	1	6.1692	0.1339	MORF4L1->chr15:79102829-79190475:+,mortality_factor_4_like_1,CTD-2147F2.1->chr15:97839111-97975324:+	G292CLONEA141B1_BONE	0.95	1	6.3031	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	SRGAP1--RP11-315E17.1	329	72	SRGAP1	6435	chr12:64410792:+	RP11-315E17.1	36577	chr12:81811077:+	ONLY_REF_SPLICE	YES	51	0	0.89	1	2.9373	0.6428	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,RP11-315E17.1->chr12:81771821-81866733:+	G292CLONEA141B1_BONE	0.89	1	3.5801	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	KIAA0196--MDM1	305	120	KIAA0196	1226	chr8:126103857:-	MDM1	45555	chr12:68696652:-	ONLY_REF_SPLICE	YES	257	53	0.62	0.89	2.723	1.0714	KIAA0196->KIAA0196,chr8:126036502-126104082:-,MDM1->Mdm1_nuclear_protein,chr12:68666223-68726161:-	G292CLONEA141B1_BONE	0.62	0.89	3.7944	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MED13L--TMEM132B	319	62	MED13L	6460	chr12:116534474:-	TMEM132B	47554	chr12:125900077:+	ONLY_REF_SPLICE	YES	39	0	0.91	1	2.848	0.5535	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,TMEM132B->chr12:125671382-126146917:+,transmembrane_protein_132B	G292CLONEA141B1_BONE	0.91	1	3.4015	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	SRGAP1--ACSS3	281	19	SRGAP1	1591	chr12:64238663:+	ACSS3	49034	chr12:81610680:+	ONLY_REF_SPLICE	YES	213	0	0.58	1	2.5088	0.1696	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,ACSS3->acyl-CoA_synthetase_short-chain_family_member_3,chr12:81331594-81650533:+	G292CLONEA141B1_BONE	0.58	1	2.6784	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	DAXX--KIFC3	242	79	DAXX	7317	chr6:33286774:-	KIFC3	31923	chr16:57800897:-	ONLY_REF_SPLICE	YES	0	192	1	0.63	2.1606	0.7053	DAXX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:33286335-33297046:-,death-domain_associated_protein,KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3	G292CLONEA141B1_BONE	0.63	1	2.8659	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	COL5A1--ECE1	169	38	COL5A1	7112	chr9:137593179:+	ECE1	74546	chr1:21616649:-	ONLY_REF_SPLICE	YES	108	127	0.66	0.62	1.5088	0.3393	COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,ECE1->chr1:21543740-21671997:-,endothelin_converting_enzyme_1	G292CLONEA141B1_BONE	0.62	0.66	1.8481	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	FDFT1--CTSB	160	46	FDFT1	11742	chr8:11689179:+	CTSB	30526	chr8:11706673:-	ONLY_REF_SPLICE	YES	629	3048	0.25	0.06	1.4285	0.4107	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[3215],FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1,CTSB->Oncogene{Bushman},cathepsin_B,chr8:11700033-11726957:-	G292CLONEA141B1_BONE	0.06	0.25	1.8392	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	COL22A1--CHST12	115	29	COL22A1	43521	chr8:139688801:-	CHST12	75861	chr7:2472198:+	ONLY_REF_SPLICE	YES	81	10	0.64	0.94	1.0267	0.2589	COL22A1->chr8:139600478-139926249:-,collagen_type_XXII_alpha_1,CHST12->carbohydrate_(chondroitin_4)_sulfotransferase_12,chr7:2443223-2474242:+	G292CLONEA141B1_BONE	0.64	0.94	1.2856	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	KIFC3--KATNB1	116	5	KIFC3	29908	chr16:57792187:-	KATNB1	44174	chr16:57791143:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0356	0.0446	LOCAL_INVERSION:-:+:[967],KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3,KATNB1->chr16:57769642-57791162:+,katanin_regulatory_subunit_B1	G292CLONEA141B1_BONE	0.99	1	1.0802	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	ME3--FAM19A2	53	16	ME3	5719	chr11:86267595:-	FAM19A2	47697	chr12:62261207:-	ONLY_REF_SPLICE	YES	14	1	0.83	0.99	0.4732	0.1428	ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	G292CLONEA141B1_BONE	0.83	0.99	0.616	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MDM2--TVP23C	52	12	MDM2	1316	chr12:69202271:+	TVP23C	27018	chr17:15450462:-	ONLY_REF_SPLICE	YES	58	231	0.52	0.22	0.4643	0.1071	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae)	G292CLONEA141B1_BONE	0.22	0.52	0.5714	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	DOCK1--GFM1	45	18	DOCK1	1155	chr10:128594132:+	GFM1	74087	chr3:158376711:+	ONLY_REF_SPLICE	YES	40	63	0.61	0.5	0.4018	0.1607	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,GFM1->G_elongation_factor,_mitochondrial_1,chr3:158362067-158410364:+	G292CLONEA141B1_BONE	0.5	0.61	0.5625	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	ASAP1--TG	42	12	ASAP1	3357	chr8:131414131:-	TG	48759	chr8:133880360:+	ONLY_REF_SPLICE	YES	69	0	0.44	1	0.375	0.1071	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,TG->chr8:133879203-134147147:+,thyroglobulin	G292CLONEA141B1_BONE	0.44	1	0.4821	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MSRB3--TBK1	39	12	MSRB3	9323	chr12:65762806:+	TBK1	34907	chr12:64889263:+	ONLY_REF_SPLICE	YES	218	70	0.19	0.42	0.3482	0.1071	MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3,TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+	G292CLONEA141B1_BONE	0.19	0.42	0.4553	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	FAM49B--MSRB3	37	18	FAM49B	13578	chr8:130891635:-	MSRB3	45823	chr12:65881784:+	ONLY_REF_SPLICE	YES	313	1	0.15	0.98	0.3303	0.1607	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	G292CLONEA141B1_BONE	0.15	0.98	0.491	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	KIF3B--NXPE2	34	21	KIF3B	5228	chr20:30904677:+	NXPE2	17207	chr11:114550379:+	ONLY_REF_SPLICE	YES	37	0	0.6	1	0.3036	0.1875	KIF3B->chr20:30865467-30922814:+,kinesin_family_member_3B,NXPE2->chr11:114549108-114579362:+,neurexophilin_and_PC-esterase_domain_family_member_2	G292CLONEA141B1_BONE	0.6	1	0.4911	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	CTTN--DISC1FP1	31	11	CTTN	17084	chr11:70277386:+	DISC1FP1	37005	chr11:90648038:+	ONLY_REF_SPLICE	YES	710	0	0.06	1	0.2768	0.0982	CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,DISC1FP1->DISC1_fusion_partner_1_(non-protein_coding),chr11:89984400-90648220:+	G292CLONEA141B1_BONE	0.06	1	0.375	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	KIAA0196--MDM1	3	102	KIAA0196	1226	chr8:126103857:-	MDM1	45559	chr12:68696648:-	INCL_NON_REF_SPLICE	YES	257	53	0.29	0.66	0.0268	0.9107	KIAA0196->KIAA0196,chr8:126036502-126104082:-,MDM1->Mdm1_nuclear_protein,chr12:68666223-68726161:-	G292CLONEA141B1_BONE	0.29	0.66	0.9375	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	DAXX--KIFC3	8	80	DAXX	7625	chr6:33286466:-	KIFC3	31923	chr16:57800897:-	INCL_NON_REF_SPLICE	YES	0	192	1	0.31	0.0714	0.7142	DAXX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:33286335-33297046:-,death-domain_associated_protein,KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3	G292CLONEA141B1_BONE	0.31	1	0.7856	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	PPP2R1B--TVP23C	26	5	PPP2R1B	2623	chr11:111635529:-	TVP23C	34165	chr17:15419876:-	INCL_NON_REF_SPLICE	YES	60	59	0.34	0.34	0.2321	0.0446	PPP2R1B->chr11:111597632-111637151:-,protein_phosphatase_2_regulatory_subunit_A,_beta,TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae)	G292CLONEA141B1_BONE	0.34	0.34	0.2767	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	COX10--FER1L6	25	5	COX10	7304	chr17:14095538:+	FER1L6	18930	chr8:124985674:+	ONLY_REF_SPLICE	YES	36	1	0.45	0.97	0.2232	0.0446	COX10->COX10_heme_A:farnesyltransferase_cytochrome_c_oxidase_assembly_factor,chr17:13972813-14111994:+,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	G292CLONEA141B1_BONE	0.45	0.97	0.2678	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	HEPH--GPR112	24	4	HEPH	20130	chrX:65428088:+	GPR112	51438	chrX:135443614:+	ONLY_REF_SPLICE	YES	4	0	0.88	1	0.2143	0.0357	HEPH->chrX:65382391-65488709:+,hephaestin,GPR112->chrX:135383122-135519215:+	G292CLONEA141B1_BONE	0.88	1	0.25	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MORF4L1--CTD-2147F2.1	20	15	MORF4L1	5537	chr15:79165560:+	CTD-2147F2.1	25179	chr15:97954422:+	ONLY_REF_SPLICE	YES	108	0	0.24	1	0.1786	0.1339	MORF4L1->chr15:79102829-79190475:+,mortality_factor_4_like_1,CTD-2147F2.1->chr15:97839111-97975324:+	G292CLONEA141B1_BONE	0.24	1	0.3125	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	NIPBL--SIMC1	19	6	NIPBL	41566	chr5:37049403:+	SIMC1	59601	chr5:175716657:+	ONLY_REF_SPLICE	YES	28	1	0.47	0.96	0.1696	0.0536	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,SIMC1->SUMO_interacting_motifs_containing_1,chr5:175665365-175772994:+	G292CLONEA141B1_BONE	0.47	0.96	0.2232	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	AP006621.5--TALDO1	19	1	AP006621.5	2850	chr11:783671:+	TALDO1	14899	chr11:764813:+	ONLY_REF_SPLICE	YES	2	60	0.91	0.25	0.1696	0.0089	LOCAL_REARRANGEMENT:+:[12554],AP006621.5->chr11:777578-784297:+,TALDO1->chr11:747329-765024:+,transaldolase_1	G292CLONEA141B1_BONE	0.25	0.91	0.1785	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	CYHR1--FOXH1	17	5	CYHR1	10102	chr8:145678605:-	FOXH1	18055	chr8:145700406:-	INCL_NON_REF_SPLICE	YES	41	0	0.35	1	0.1518	0.0446	LOCAL_REARRANGEMENT:-:[7735],CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	G292CLONEA141B1_BONE	0.35	1	0.1964	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	SRGAP1--RP11-315E17.1	8	40	SRGAP1	6435	chr12:64410792:+	RP11-315E17.1	37616	chr12:81823779:+	INCL_NON_REF_SPLICE	YES	51	1	0.48	0.98	0.0714	0.3571	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,RP11-315E17.1->chr12:81771821-81866733:+	G292CLONEA141B1_BONE	0.48	0.98	0.4285	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	SRGAP1--RP11-315E17.1	6	40	SRGAP1	6435	chr12:64410792:+	RP11-315E17.1	37619	chr12:81823782:+	ONLY_REF_SPLICE	YES	51	1	0.47	0.98	0.0536	0.3571	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,RP11-315E17.1->chr12:81771821-81866733:+	G292CLONEA141B1_BONE	0.47	0.98	0.4107	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	AC003665.1--RP11-60A24.3	14	2	AC003665.1	2195	chr17:45995818:-	RP11-60A24.3	11606	chr17:55849557:-	ONLY_REF_SPLICE	YES	4	0	0.8	1	0.125	0.0179	AC003665.1->chr17:45974696-46018776:-,RP11-60A24.3->chr17:55849307-55912110:-	G292CLONEA141B1_BONE	0.8	1	0.1429	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	TMED3--HMG20A	14	0	TMED3	2605	chr15:79606347:+	HMG20A	15268	chr15:77750746:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.125	0	TMED3->chr15:79603404-79704334:+,transmembrane_p24_trafficking_protein_3,HMG20A->chr15:77712754-77777949:+,high_mobility_group_20A	G292CLONEA141B1_BONE	1	1	0.125	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MORF4L1--CTD-2147F2.1	13	3	MORF4L1	5376	chr15:79165399:+	CTD-2147F2.1	27301	chr15:97973000:+	ONLY_REF_SPLICE	YES	35	12	0.31	0.57	0.1161	0.0268	MORF4L1->chr15:79102829-79190475:+,mortality_factor_4_like_1,CTD-2147F2.1->chr15:97839111-97975324:+	G292CLONEA141B1_BONE	0.31	0.57	0.1429	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	TBC1D30--COX10	11	6	TBC1D30	14437	chr12:65237265:+	COX10	32930	chr17:14063194:+	ONLY_REF_SPLICE	YES	1	80	0.94	0.18	0.0982	0.0536	TBC1D30->TBC1_domain_family_member_30,chr12:65174589-65274812:+,COX10->COX10_heme_A:farnesyltransferase_cytochrome_c_oxidase_assembly_factor,chr17:13972813-14111994:+	G292CLONEA141B1_BONE	0.18	0.94	0.1518	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	PPP2R1B--TVP23C	11	5	PPP2R1B	2623	chr11:111635529:-	TVP23C	34068	chr17:15419973:-	ONLY_REF_SPLICE	YES	60	63	0.21	0.2	0.0982	0.0446	PPP2R1B->chr11:111597632-111637151:-,protein_phosphatase_2_regulatory_subunit_A,_beta,TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae)	G292CLONEA141B1_BONE	0.2	0.21	0.1428	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	SGK223--SLC6A15	11	2	SGK223	5421	chr8:8233763:-	SLC6A15	16571	chr12:85286087:-	ONLY_REF_SPLICE	YES	80	128	0.14	0.09	0.0982	0.0179	SGK223->chr8:8175258-8244008:-,SLC6A15->chr12:85253492-85307394:-,solute_carrier_family_6_member_15	G292CLONEA141B1_BONE	0.09	0.14	0.1161	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	EED--PPFIA1	9	6	EED	6238	chr11:85967554:+	PPFIA1	22754	chr11:70170508:+	ONLY_REF_SPLICE	YES	61	89	0.2	0.14	0.0804	0.0536	EED->chr11:85955586-85989855:+,embryonic_ectoderm_development,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	G292CLONEA141B1_BONE	0.14	0.2	0.134	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	SRGAP1--RP11-315E17.1	1	36	SRGAP1	5372	chr12:64383852:+	RP11-315E17.1	36577	chr12:81811077:+	ONLY_REF_SPLICE	YES	52	0	0.42	1	0.0089	0.3214	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,RP11-315E17.1->chr12:81771821-81866733:+	G292CLONEA141B1_BONE	0.42	1	0.3303	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	TVP23C--KRT16P2	9	4	TVP23C	4551	chr17:15457079:-	KRT16P2	20558	chr17:16735663:-	ONLY_REF_SPLICE	YES	331	2	0.04	0.87	0.0804	0.0357	TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),KRT16P2->chr17:16733313-16736147:-,keratin_16_pseudogene_2	G292CLONEA141B1_BONE	0.04	0.87	0.1161	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	ISY1--SYNPR-AS1	9	0	ISY1	4278	chr3:128875476:-	SYNPR-AS1	17869	chr3:63535727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0804	0	ISY1->ISY1_splicing_factor_homolog,chr3:128846258-128880136:-,SYNPR-AS1->SYNPR_antisense_RNA_1,chr3:63409272-63535727:-	G292CLONEA141B1_BONE	1	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	SDK1--GLCCI1	9	0	SDK1	1437	chr7:3341516:+	GLCCI1	64190	chr7:8043538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0804	0	SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1,GLCCI1->chr7:8008425-8133902:+,glucocorticoid_induced_1	G292CLONEA141B1_BONE	1	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	DOCK1--GFM1	6	10	DOCK1	1144	chr10:128594121:+	GFM1	74087	chr3:158376711:+	INCL_NON_REF_SPLICE	YES	26	63	0.38	0.2	0.0536	0.0893	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,GFM1->G_elongation_factor,_mitochondrial_1,chr3:158362067-158410364:+	G292CLONEA141B1_BONE	0.2	0.38	0.1429	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MED13L--TMEM132B	2	24	MED13L	4232	chr12:116549233:-	TMEM132B	47554	chr12:125900077:+	ONLY_REF_SPLICE	YES	47	0	0.36	1	0.0179	0.2143	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,TMEM132B->chr12:125671382-126146917:+,transmembrane_protein_132B	G292CLONEA141B1_BONE	0.36	1	0.2322	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	NPC1--ANKRD29	8	0	NPC1	6485	chr18:21148787:-	ANKRD29	37348	chr18:21229157:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0714	0	LOCAL_REARRANGEMENT:-:[12028],NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,ANKRD29->ankyrin_repeat_domain_29,chr18:21178890-21242849:-	G292CLONEA141B1_BONE	1	1	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	DAXX--KIFC3	2	22	DAXX	7317	chr6:33286774:-	KIFC3	33240	chr16:57799552:-	ONLY_REF_SPLICE	YES	0	127	1	0.16	0.0179	0.1964	DAXX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:33286335-33297046:-,death-domain_associated_protein,KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3	G292CLONEA141B1_BONE	0.16	1	0.2143	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	ST3GAL5--EXOC6B	7	2	ST3GAL5	1191	chr2:86115947:-	EXOC6B	37672	chr2:72719558:-	ONLY_REF_SPLICE	YES	41	8	0.18	0.53	0.0625	0.0179	ST3GAL5->ST3_beta-galactoside_alpha-2,3-sialyltransferase_5,chr2:86066267-86116137:-,EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B	G292CLONEA141B1_BONE	0.18	0.53	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MYH10--AC002539.1	6	4	MYH10	2704	chr17:8526220:-	AC002539.1	52276	chr17:68018338:-	ONLY_REF_SPLICE	YES	242	0	0.04	1	0.0536	0.0357	MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle,AC002539.1->chr17:68013465-68125000:-	G292CLONEA141B1_BONE	0.04	1	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	TRPS1--MPRIP	7	0	TRPS1	13825	chr8:116599228:-	MPRIP	42270	chr17:17049350:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0625	0	TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein	G292CLONEA141B1_BONE	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	TVP23C--KRT16P2	5	6	TVP23C	4631	chr17:15456999:-	KRT16P2	20558	chr17:16735663:-	ONLY_REF_SPLICE	YES	265	2	0.04	0.85	0.0446	0.0536	TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),KRT16P2->chr17:16733313-16736147:-,keratin_16_pseudogene_2	G292CLONEA141B1_BONE	0.04	0.85	0.0982	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MORF4L1--CTD-2147F2.1	5	4	MORF4L1	5376	chr15:79165399:+	CTD-2147F2.1	26266	chr15:97959020:+	ONLY_REF_SPLICE	YES	35	7	0.2	0.56	0.0446	0.0357	MORF4L1->chr15:79102829-79190475:+,mortality_factor_4_like_1,CTD-2147F2.1->chr15:97839111-97975324:+	G292CLONEA141B1_BONE	0.2	0.56	0.0803	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	EED--PPFIA1	4	6	EED	7320	chr11:85968638:+	PPFIA1	22754	chr11:70170508:+	ONLY_REF_SPLICE	YES	60	89	0.14	0.1	0.0357	0.0536	EED->chr11:85955586-85989855:+,embryonic_ectoderm_development,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	G292CLONEA141B1_BONE	0.1	0.14	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	COX10--FER1L6	5	1	COX10	7304	chr17:14095538:+	FER1L6	21944	chr8:124989657:+	ONLY_REF_SPLICE	YES	36	7	0.14	0.46	0.0446	0.0089	COX10->COX10_heme_A:farnesyltransferase_cytochrome_c_oxidase_assembly_factor,chr17:13972813-14111994:+,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	G292CLONEA141B1_BONE	0.14	0.46	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	IMMP2L--DOCK4	5	1	IMMP2L	4976	chr7:111127294:-	DOCK4	44957	chr7:111484953:-	ONLY_REF_SPLICE	YES	11	13	0.35	0.32	0.0446	0.0089	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	G292CLONEA141B1_BONE	0.32	0.35	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MDM1--TMEM212	5	1	MDM1	8800	chr12:68715127:-	TMEM212	24789	chr3:171569772:+	ONLY_REF_SPLICE	YES	55	0	0.1	1	0.0446	0.0089	MDM1->Mdm1_nuclear_protein,chr12:68666223-68726161:-,TMEM212->chr3:171561139-171656505:+,transmembrane_protein_212	G292CLONEA141B1_BONE	0.1	1	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	CDK4--HMGB1	5	0	CDK4	3019	chr12:58145368:-	HMGB1	16906	chr13:31035550:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	CDK4->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:58141510-58149796:-,cyclin-dependent_kinase_4,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	G292CLONEA141B1_BONE	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	IMMP2L--DOCK4	5	0	IMMP2L	4976	chr7:111127294:-	DOCK4	47200	chr7:111474742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	G292CLONEA141B1_BONE	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	COL22A1--CHST12	2	11	COL22A1	41383	chr8:139696668:-	CHST12	75861	chr7:2472198:+	ONLY_REF_SPLICE	YES	93	10	0.12	0.57	0.0179	0.0982	COL22A1->chr8:139600478-139926249:-,collagen_type_XXII_alpha_1,CHST12->carbohydrate_(chondroitin_4)_sulfotransferase_12,chr7:2443223-2474242:+	G292CLONEA141B1_BONE	0.12	0.57	0.1161	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MORF4L1--CTD-2147F2.1	1	15	MORF4L1	5437	chr15:79165460:+	CTD-2147F2.1	25179	chr15:97954422:+	ONLY_REF_SPLICE	YES	96	0	0.14	1	0.0089	0.1339	MORF4L1->chr15:79102829-79190475:+,mortality_factor_4_like_1,CTD-2147F2.1->chr15:97839111-97975324:+	G292CLONEA141B1_BONE	0.14	1	0.1428	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	NIPBL--SIMC1	3	6	NIPBL	41566	chr5:37049403:+	SIMC1	58471	chr5:175697394:+	ONLY_REF_SPLICE	YES	28	0	0.24	1	0.0268	0.0536	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,SIMC1->SUMO_interacting_motifs_containing_1,chr5:175665365-175772994:+	G292CLONEA141B1_BONE	0.24	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	FAM19A2--AVIL	4	1	FAM19A2	6794	chr12:62652544:-	AVIL	47559	chr12:58197174:-	ONLY_REF_SPLICE	YES	4	7	0.56	0.42	0.0357	0.0089	FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2,AVIL->advillin,chr12:58191159-58212487:-	G292CLONEA141B1_BONE	0.42	0.56	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MARK3--EIF5	4	1	MARK3	3189	chr14:103871604:+	EIF5	41481	chr14:103810237:+	INCL_NON_REF_SPLICE	YES	70	14	0.07	0.26	0.0357	0.0089	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_REARRANGEMENT:+:[40367],MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3,EIF5->chr14:103799881-103811362:+,eukaryotic_translation_initiation_factor_5	G292CLONEA141B1_BONE	0.07	0.26	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	PPP2R1B--TVP23C	3	5	PPP2R1B	2623	chr11:111635529:-	TVP23C	34168	chr17:15419873:-	INCL_NON_REF_SPLICE	YES	60	58	0.12	0.12	0.0268	0.0446	PPP2R1B->chr11:111597632-111637151:-,protein_phosphatase_2_regulatory_subunit_A,_beta,TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae)	G292CLONEA141B1_BONE	0.12	0.12	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RP11-315E17.1--DPY19L2	4	1	RP11-315E17.1	2243	chr12:81811118:+	DPY19L2	18746	chr12:64020306:-	ONLY_REF_SPLICE	YES	1	2	0.83	0.71	0.0357	0.0089	RP11-315E17.1->chr12:81771821-81866733:+,DPY19L2->chr12:63952693-64062719:-,dpy-19_like_2	G292CLONEA141B1_BONE	0.71	0.83	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	ISY1--COPG1	4	0	ISY1	4278	chr3:128875476:-	COPG1	30116	chr3:128985867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	LOCAL_INVERSION:-:+:[88313],ISY1->ISY1_splicing_factor_homolog,chr3:128846258-128880136:-,COPG1->chr3:128968449-128996614:+,coatomer_protein_complex_subunit_gamma_1	G292CLONEA141B1_BONE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RP11-123O10.4--TMBIM4	4	0	RP11-123O10.4	1113	chr12:67462830:-	TMBIM4	9528	chr12:66547228:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	RP11-123O10.4->chr12:67285656-67462942:-,TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4	G292CLONEA141B1_BONE	1	1	0.0357	TRUE	1	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	KIF3B--NXPE2	2	5	KIF3B	5228	chr20:30904677:+	NXPE2	18313	chr11:114568767:+	ONLY_REF_SPLICE	YES	37	2	0.16	0.78	0.0179	0.0446	KIF3B->chr20:30865467-30922814:+,kinesin_family_member_3B,NXPE2->chr11:114549108-114579362:+,neurexophilin_and_PC-esterase_domain_family_member_2	G292CLONEA141B1_BONE	0.16	0.78	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RP11-123O10.4--TBC1D28	3	1	RP11-123O10.4	1113	chr12:67462830:-	TBC1D28	8330	chr17:18545311:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0.0089	RP11-123O10.4->chr12:67285656-67462942:-,TBC1D28->TBC1_domain_family_member_28,chr17:18538319-18565263:-	G292CLONEA141B1_BONE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RP11-123O10.4--TBC1D28	3	1	RP11-123O10.4	1113	chr12:67462830:-	TBC1D28	8359	chr17:18545282:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0.0089	RP11-123O10.4->chr12:67285656-67462942:-,TBC1D28->TBC1_domain_family_member_28,chr17:18538319-18565263:-	G292CLONEA141B1_BONE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RPSAP52--IRAK3	3	1	RPSAP52	1132	chr12:66220623:-	IRAK3	10040	chr12:66597491:+	ONLY_REF_SPLICE	YES	26	18	0.13	0.18	0.0268	0.0089	RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,IRAK3->chr12:66582659-66648402:+,interleukin_1_receptor_associated_kinase_3	G292CLONEA141B1_BONE	0.13	0.18	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	CAPZA2--RPL30	3	0	CAPZA2	3371	chr7:116502704:+	RPL30	26457	chr8:99057627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	G292CLONEA141B1_BONE	1	1	0.0268	TRUE	0	1	0	1	1	TRUE	ACH-000082
G292CLONEA141B1_BONE	CCND1--CDK4	3	0	CCND1	2455	chr11:69457828:+	CDK4	14253	chr12:58145358:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	chimerdb_pubmed{etiology of cancer},CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,CDK4->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:58141510-58149796:-,cyclin-dependent_kinase_4	G292CLONEA141B1_BONE	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	ISY1--SYNPR-AS1	3	0	ISY1	4278	chr3:128875476:-	SYNPR-AS1	17852	chr3:63535744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	ISY1->ISY1_splicing_factor_homolog,chr3:128846258-128880136:-,SYNPR-AS1->SYNPR_antisense_RNA_1,chr3:63409272-63535727:-	G292CLONEA141B1_BONE	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	NLGN1--SDK1	2	3	NLGN1	15992	chr3:173993290:+	SDK1	51925	chr7:4116630:+	ONLY_REF_SPLICE	YES	18	1	0.22	0.83	0.0179	0.0268	NLGN1->chr3:173114074-174004434:+,neuroligin_1,SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1	G292CLONEA141B1_BONE	0.22	0.83	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	NLGN1--SDK1	2	3	NLGN1	16019	chr3:173993317:+	SDK1	51925	chr7:4116630:+	ONLY_REF_SPLICE	YES	17	1	0.23	0.83	0.0179	0.0268	NLGN1->chr3:173114074-174004434:+,neuroligin_1,SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1	G292CLONEA141B1_BONE	0.23	0.83	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	NIPBL--SIMC1	1	6	NIPBL	41566	chr5:37049403:+	SIMC1	57224	chr5:175690420:+	ONLY_REF_SPLICE	NO	28	0	0.2	1	0.0089	0.0536	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,SIMC1->SUMO_interacting_motifs_containing_1,chr5:175665365-175772994:+	G292CLONEA141B1_BONE	0.2	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	DOCK1--GFM1	1	5	DOCK1	1155	chr10:128594132:+	GFM1	75846	chr3:158378663:+	ONLY_REF_SPLICE	YES	40	71	0.13	0.08	0.0089	0.0446	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,GFM1->G_elongation_factor,_mitochondrial_1,chr3:158362067-158410364:+	G292CLONEA141B1_BONE	0.08	0.13	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	COX10--FER1L6	2	0	COX10	6071	chr17:14063264:+	FER1L6	21944	chr8:124989657:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	COX10->COX10_heme_A:farnesyltransferase_cytochrome_c_oxidase_assembly_factor,chr17:13972813-14111994:+,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	G292CLONEA141B1_BONE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MDM1--LIMD1-AS1	2	0	MDM1	13148	chr12:68707223:-	LIMD1-AS1	25354	chr3:45721563:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	MDM1->Mdm1_nuclear_protein,chr12:68666223-68726161:-,LIMD1-AS1->LIMD1_antisense_RNA_1,chr3:45720535-45730626:-	G292CLONEA141B1_BONE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MDM1--TMEM212	2	0	MDM1	8622	chr12:68715305:-	TMEM212	24789	chr3:171569772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	MDM1->Mdm1_nuclear_protein,chr12:68666223-68726161:-,TMEM212->chr3:171561139-171656505:+,transmembrane_protein_212	G292CLONEA141B1_BONE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	PITPNB--RBX1	2	0	PITPNB	8332	chr22:28290543:-	RBX1	24666	chr22:41363803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	G292CLONEA141B1_BONE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	TMEM135--PRSS23	2	0	TMEM135	5670	chr11:86868448:+	PRSS23	32907	chr11:86534419:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	LOCAL_REARRANGEMENT:+:[84934],TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,PRSS23->chr11:86502101-86663952:+,protease,_serine_23	G292CLONEA141B1_BONE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	SPATS2--PRPH	1	3	SPATS2	3067	chr12:49765073:+	PRPH	31354	chr12:49687507:+	ONLY_REF_SPLICE	YES	60	1	0.06	0.8	0.0089	0.0268	LOCAL_REARRANGEMENT:+:[67902],SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,PRPH->chr12:49687035-49692465:+,peripherin	G292CLONEA141B1_BONE	0.06	0.8	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	SPATS2--PRPH	1	2	SPATS2	2004	chr12:49761370:+	PRPH	31354	chr12:49687507:+	ONLY_REF_SPLICE	NO	43	1	0.07	0.75	0.0089	0.0179	LOCAL_REARRANGEMENT:+:[67902],SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,PRPH->chr12:49687035-49692465:+,peripherin	G292CLONEA141B1_BONE	0.07	0.75	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	ST3GAL5--EXOC6B	1	2	ST3GAL5	3795	chr2:86097195:-	EXOC6B	37672	chr2:72719558:-	ONLY_REF_SPLICE	YES	47	8	0.06	0.27	0.0089	0.0179	ST3GAL5->ST3_beta-galactoside_alpha-2,3-sialyltransferase_5,chr2:86066267-86116137:-,EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B	G292CLONEA141B1_BONE	0.06	0.27	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000082
NCIH1694_LUNG	MACF1--SDCCAG8	1074	498	MACF1	68303	chr1:39838268:+	SDCCAG8	139424	chr1:243493842:+	ONLY_REF_SPLICE	YES	72	42	0.96	0.97	12.1926	5.6536	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH1694_LUNG	0.96	0.97	17.8462	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	SDCCAG8--MACF1	721	399	SDCCAG8	19917	chr1:243542165:+	MACF1	100429	chr1:39844133:+	ONLY_REF_SPLICE	YES	162	80	0.87	0.93	8.1852	4.5297	SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	NCIH1694_LUNG	0.87	0.93	12.7149	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	COPA--DEDD	739	289	COPA	22940	chr1:160264274:-	DEDD	32973	chr1:161100637:-	ONLY_REF_SPLICE	YES	285	36	0.78	0.97	8.3895	3.2809	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,DEDD->chr1:161090764-161102478:-,death_effector_domain_containing	NCIH1694_LUNG	0.78	0.97	11.6704	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	DEDD--MACF1	602	366	DEDD	4562	chr1:161093629:-	MACF1	44035	chr1:39775242:+	ONLY_REF_SPLICE	YES	171	109	0.85	0.9	6.8342	4.155	DEDD->chr1:161090764-161102478:-,death_effector_domain_containing,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	NCIH1694_LUNG	0.85	0.9	10.9892	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	HPRT1--ZNF75D	272	226	HPRT1	3674	chrX:133609394:+	ZNF75D	26776	chrX:134385959:-	ONLY_REF_SPLICE	YES	294	0	0.63	1	3.0879	2.5657	HPRT1->chrX:133594183-133654543:+,hypoxanthine_phosphoribosyltransferase_1,ZNF75D->chrX:134382867-134478012:-,zinc_finger_protein_75D	NCIH1694_LUNG	0.63	1	5.6536	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	COPA--DEDD	50	284	COPA	22940	chr1:160264274:-	DEDD	32977	chr1:161100633:-	ONLY_REF_SPLICE	YES	285	33	0.54	0.91	0.5676	3.2241	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,DEDD->chr1:161090764-161102478:-,death_effector_domain_containing	NCIH1694_LUNG	0.54	0.91	3.7917	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	FAM49B--ASAP1	92	61	FAM49B	14700	chr8:130883621:-	ASAP1	54362	chr8:131149284:-	ONLY_REF_SPLICE	YES	380	119	0.29	0.56	1.0444	0.6925	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[34978],FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-	NCIH1694_LUNG	0.29	0.56	1.7369	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	SDCCAG8--MACF1	46	209	SDCCAG8	19917	chr1:243542165:+	MACF1	101171	chr1:39844875:+	ONLY_REF_SPLICE	YES	162	76	0.61	0.77	0.5222	2.3727	SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	NCIH1694_LUNG	0.61	0.77	2.8949	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	DEDD--MACF1	3	366	DEDD	4562	chr1:161093629:-	MACF1	44013	chr1:39775220:+	INCL_NON_REF_SPLICE	YES	171	117	0.68	0.76	0.0341	4.155	DEDD->chr1:161090764-161102478:-,death_effector_domain_containing,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	NCIH1694_LUNG	0.68	0.76	4.1891	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	UBFD1--SCNN1B	73	56	UBFD1	5864	chr16:23574051:+	SCNN1B	23306	chr16:23359913:+	ONLY_REF_SPLICE	YES	137	101	0.48	0.56	0.8287	0.6357	UBFD1->chr16:23568392-23585710:+,ubiquitin_family_domain_containing_1,SCNN1B->Oncogene{Bushman},chr16:23289552-23392620:+,sodium_channel_epithelial_1_beta_subunit	NCIH1694_LUNG	0.48	0.56	1.4644	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	HPRT1--ZNF75D	30	204	HPRT1	3674	chrX:133609394:+	ZNF75D	26782	chrX:134385953:-	INCL_NON_REF_SPLICE	YES	294	0	0.44	1	0.3406	2.3159	HPRT1->chrX:133594183-133654543:+,hypoxanthine_phosphoribosyltransferase_1,ZNF75D->chrX:134382867-134478012:-,zinc_finger_protein_75D	NCIH1694_LUNG	0.44	1	2.6565	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	COPA--DEDD	8	268	COPA	22936	chr1:160264278:-	DEDD	32950	chr1:161100660:-	INCL_NON_REF_SPLICE	YES	282	36	0.49	0.88	0.0908	3.0425	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,DEDD->chr1:161090764-161102478:-,death_effector_domain_containing	NCIH1694_LUNG	0.49	0.88	3.1333	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	COPA--DEDD	3	268	COPA	22936	chr1:160264278:-	DEDD	32947	chr1:161100663:-	INCL_NON_REF_SPLICE	YES	282	36	0.49	0.88	0.0341	3.0425	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,DEDD->chr1:161090764-161102478:-,death_effector_domain_containing	NCIH1694_LUNG	0.49	0.88	3.0766	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	DEDD--MACF1	36	129	DEDD	4562	chr1:161093629:-	MACF1	44710	chr1:39775917:+	ONLY_REF_SPLICE	YES	171	194	0.49	0.46	0.4087	1.4645	DEDD->chr1:161090764-161102478:-,death_effector_domain_containing,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	NCIH1694_LUNG	0.46	0.49	1.8732	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	NIPBL--RHOXF2B	61	23	NIPBL	10481	chr5:36976040:+	RHOXF2B	57255	chrX:119206810:-	INCL_NON_REF_SPLICE	YES	55	0	0.6	1	0.6925	0.2611	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,RHOXF2B->Rhox_homeobox_family_member_2B,chrX:119205848-119211707:-	NCIH1694_LUNG	0.6	1	0.9536	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	RP11-278H7.1--VANGL2	49	42	RP11-278H7.1	1125	chr1:244080828:+	VANGL2	17688	chr1:160385438:+	ONLY_REF_SPLICE	YES	0	80	1	0.53	0.5563	0.4768	RP11-278H7.1->chr1:244080704-244210619:+,VANGL2->VANGL_planar_cell_polarity_protein_2,chr1:160370376-160398468:+	NCIH1694_LUNG	0.53	1	1.0331	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MACF1--SDCCAG8	10	196	MACF1	67185	chr1:39835858:+	SDCCAG8	139424	chr1:243493842:+	ONLY_REF_SPLICE	YES	211	42	0.49	0.83	0.1135	2.2251	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH1694_LUNG	0.49	0.83	2.3386	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	COPA--DEDD	2	227	COPA	22940	chr1:160264274:-	DEDD	34006	chr1:161094316:-	ONLY_REF_SPLICE	YES	285	53	0.45	0.81	0.0227	2.577	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,DEDD->chr1:161090764-161102478:-,death_effector_domain_containing	NCIH1694_LUNG	0.45	0.81	2.5997	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PABPN1--CHD8	38	38	PABPN1	2778	chr14:23792275:+	CHD8	15613	chr14:21896413:-	ONLY_REF_SPLICE	YES	1128	135	0.06	0.36	0.4314	0.4314	PABPN1->chr14:23790498-23795394:+,poly(A)_binding_protein_nuclear_1,CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8	NCIH1694_LUNG	0.06	0.36	0.8628	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	UBFD1--SCNN1B	21	58	UBFD1	6915	chr16:23575410:+	SCNN1B	23306	chr16:23359913:+	INCL_NON_REF_SPLICE	YES	144	101	0.35	0.44	0.2384	0.6584	UBFD1->chr16:23568392-23585710:+,ubiquitin_family_domain_containing_1,SCNN1B->Oncogene{Bushman},chr16:23289552-23392620:+,sodium_channel_epithelial_1_beta_subunit	NCIH1694_LUNG	0.35	0.44	0.8968	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MGST3--PBX1	33	1	MGST3	1433	chr1:165600530:+	PBX1	43616	chr1:164761731:+	ONLY_REF_SPLICE	YES	12	30	0.74	0.53	0.3746	0.0114	MGST3->chr1:165600098-165631033:+,microsomal_glutathione_S-transferase_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	NCIH1694_LUNG	0.53	0.74	0.386	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	COPA--DEDD	1	107	COPA	22656	chr1:160264558:-	DEDD	32973	chr1:161100637:-	ONLY_REF_SPLICE	YES	351	36	0.24	0.75	0.0114	1.2147	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,DEDD->chr1:161090764-161102478:-,death_effector_domain_containing	NCIH1694_LUNG	0.24	0.75	1.2261	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PPOX--LRRC52	23	14	PPOX	1825	chr1:161137024:+	LRRC52	12889	chr1:165532742:+	ONLY_REF_SPLICE	YES	50	0	0.43	1	0.2611	0.1589	PPOX->chr1:161136200-161147803:+,protoporphyrinogen_oxidase,LRRC52->chr1:165513244-165533198:+,leucine_rich_repeat_containing_52	NCIH1694_LUNG	0.43	1	0.42	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ANKRD28--TBC1D5	24	9	ANKRD28	1395	chr3:15900884:-	TBC1D5	63147	chr3:17550097:-	ONLY_REF_SPLICE	YES	9	22	0.79	0.6	0.2725	0.1022	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH1694_LUNG	0.6	0.79	0.3747	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	HPRT1--ZNF75D	6	79	HPRT1	3674	chrX:133609394:+	ZNF75D	27922	chrX:134383248:-	ONLY_REF_SPLICE	YES	294	63	0.22	0.57	0.0681	0.8969	HPRT1->chrX:133594183-133654543:+,hypoxanthine_phosphoribosyltransferase_1,ZNF75D->chrX:134382867-134478012:-,zinc_finger_protein_75D	NCIH1694_LUNG	0.22	0.57	0.965	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MACF1--SDCCAG8	1	95	MACF1	77261	chr1:39854330:+	SDCCAG8	141765	chr1:243504341:+	ONLY_REF_SPLICE	NO	572	267	0.14	0.26	0.0114	1.0785	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH1694_LUNG	0.14	0.26	1.0899	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	RP11-499F3.2--TYW1	24	3	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	76	1	0.26	0.2725	0.0341	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	NCIH1694_LUNG	0.26	1	0.3066	TRUE	1	3	0	7	3	TRUE	ACH-000431
NCIH1694_LUNG	MFSD2A--ATF6	21	11	MFSD2A	10442	chr1:40435329:+	ATF6	21314	chr1:161789423:+	INCL_NON_REF_SPLICE	YES	659	72	0.05	0.31	0.2384	0.1249	MFSD2A->chr1:40420802-40435638:+,major_facilitator_superfamily_domain_containing_2A,ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+	NCIH1694_LUNG	0.05	0.31	0.3633	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ANKRD28--TBC1D5	17	11	ANKRD28	1395	chr3:15900884:-	TBC1D5	53042	chr3:17665405:-	ONLY_REF_SPLICE	YES	9	24	0.76	0.54	0.193	0.1249	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH1694_LUNG	0.54	0.76	0.3179	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	CCDC88A--SMEK2	17	10	CCDC88A	33553	chr2:55535945:-	SMEK2	52229	chr2:55842642:-	ONLY_REF_SPLICE	YES	138	281	0.16	0.09	0.193	0.1135	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,SMEK2->chr2:55774428-55846015:-	NCIH1694_LUNG	0.09	0.16	0.3065	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	UNC80--MAP2	18	4	UNC80	33505	chr2:210745818:+	MAP2	98132	chr2:210557349:+	ONLY_REF_SPLICE	YES	15	235	0.59	0.09	0.2043	0.0454	LOCAL_REARRANGEMENT:+:[37875],UNC80->chr2:210636717-210864024:+,unc-80_homolog,_NALCN_activator,MAP2->Oncogene{Bushman},chr2:210288782-210598842:+,microtubule_associated_protein_2	NCIH1694_LUNG	0.09	0.59	0.2497	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	UBFD1--SCNN1B	3	59	UBFD1	7558	chr16:23576053:+	SCNN1B	23306	chr16:23359913:+	ONLY_REF_SPLICE	YES	144	101	0.3	0.38	0.0341	0.6698	UBFD1->chr16:23568392-23585710:+,ubiquitin_family_domain_containing_1,SCNN1B->Oncogene{Bushman},chr16:23289552-23392620:+,sodium_channel_epithelial_1_beta_subunit	NCIH1694_LUNG	0.3	0.38	0.7039	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	CCDC88A--SMEK2	10	21	CCDC88A	33530	chr2:55535968:-	SMEK2	49365	chr2:55845517:-	INCL_NON_REF_SPLICE	YES	116	5	0.21	0.86	0.1135	0.2384	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,SMEK2->chr2:55774428-55846015:-	NCIH1694_LUNG	0.21	0.86	0.3519	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MACF1--SDCCAG8	3	45	MACF1	66028	chr1:39833986:+	SDCCAG8	139424	chr1:243493842:+	ONLY_REF_SPLICE	YES	406	42	0.11	0.53	0.0341	0.5109	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH1694_LUNG	0.11	0.53	0.545	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	NIPBL--RHOXF2B	7	28	NIPBL	10585	chr5:36976144:+	RHOXF2B	57255	chrX:119206810:-	INCL_NON_REF_SPLICE	YES	53	0	0.4	1	0.0795	0.3179	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,RHOXF2B->Rhox_homeobox_family_member_2B,chrX:119205848-119211707:-	NCIH1694_LUNG	0.4	1	0.3974	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	NIPBL--RHOXF2B	7	21	NIPBL	10465	chr5:36976024:+	RHOXF2B	57255	chrX:119206810:-	INCL_NON_REF_SPLICE	YES	65	0	0.3	1	0.0795	0.2384	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,RHOXF2B->Rhox_homeobox_family_member_2B,chrX:119205848-119211707:-	NCIH1694_LUNG	0.3	1	0.3179	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	RP11-554J4.1--AC012358.8	10	9	RP11-554J4.1	1474	chr2:55845517:+	AC012358.8	4806	chr2:55535968:+	INCL_NON_REF_SPLICE	YES	0	7	1	0.73	0.1135	0.1022	RP11-554J4.1->chr2:55845044-55845508:+,AC012358.8->chr2:55535628-55573185:+	NCIH1694_LUNG	0.73	1	0.2157	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	CARS--ATL1	9	10	CARS	16826	chr11:3038336:-	ATL1	38886	chr14:51079977:+	ONLY_REF_SPLICE	YES	117	152	0.14	0.11	0.1022	0.1135	CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase,ATL1->atlastin_GTPase_1,chr14:50999227-51099786:+	NCIH1694_LUNG	0.11	0.14	0.2157	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	CDR2L--SMIM5	10	1	CDR2L	1491	chr17:72984217:+	SMIM5	11665	chr17:73630114:+	ONLY_REF_SPLICE	YES	8	5	0.58	0.69	0.1135	0.0114	CDR2L->cerebellar_degeneration_related_protein_2_like,chr17:72983727-73001895:+,SMIM5->chr17:73629514-73637484:+,small_integral_membrane_protein_5	NCIH1694_LUNG	0.58	0.69	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	NIPBL--RHOXF2B	4	21	NIPBL	10444	chr5:36976003:+	RHOXF2B	57255	chrX:119206810:-	INCL_NON_REF_SPLICE	YES	62	0	0.29	1	0.0454	0.2384	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,RHOXF2B->Rhox_homeobox_family_member_2B,chrX:119205848-119211707:-	NCIH1694_LUNG	0.29	1	0.2838	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ANKRD28--TBC1D5	6	11	ANKRD28	2465	chr3:15855747:-	TBC1D5	53042	chr3:17665405:-	ONLY_REF_SPLICE	YES	12	24	0.59	0.41	0.0681	0.1249	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH1694_LUNG	0.41	0.59	0.193	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PPOX--LRRC52	4	16	PPOX	2077	chr1:161137276:+	LRRC52	12889	chr1:165532742:+	ONLY_REF_SPLICE	YES	71	0	0.22	1	0.0454	0.1816	PPOX->chr1:161136200-161147803:+,protoporphyrinogen_oxidase,LRRC52->chr1:165513244-165533198:+,leucine_rich_repeat_containing_52	NCIH1694_LUNG	0.22	1	0.227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	UNC80--MAP2	7	4	UNC80	33505	chr2:210745818:+	MAP2	98144	chr2:210557361:+	ONLY_REF_SPLICE	YES	15	230	0.42	0.05	0.0795	0.0454	LOCAL_REARRANGEMENT:+:[37875],UNC80->chr2:210636717-210864024:+,unc-80_homolog,_NALCN_activator,MAP2->Oncogene{Bushman},chr2:210288782-210598842:+,microtubule_associated_protein_2	NCIH1694_LUNG	0.05	0.42	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	CCDC88A--SMEK2	3	13	CCDC88A	33553	chr2:55535945:-	SMEK2	49769	chr2:55845113:-	ONLY_REF_SPLICE	YES	138	8	0.1	0.67	0.0341	0.1476	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,SMEK2->chr2:55774428-55846015:-	NCIH1694_LUNG	0.1	0.67	0.1817	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ARHGAP12--ZNF277	4	6	ARHGAP12	3926	chr10:32197100:-	ZNF277	27702	chr7:111926928:+	ONLY_REF_SPLICE	YES	35	4	0.22	0.71	0.0454	0.0681	ARHGAP12->Rho_GTPase_activating_protein_12,chr10:32094365-32217742:-,ZNF277->chr7:111846643-111983151:+,zinc_finger_protein_277	NCIH1694_LUNG	0.22	0.71	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PPOX--LRRC52	3	10	PPOX	1525	chr1:161136724:+	LRRC52	12889	chr1:165532742:+	ONLY_REF_SPLICE	YES	95	0	0.12	1	0.0341	0.1135	PPOX->chr1:161136200-161147803:+,protoporphyrinogen_oxidase,LRRC52->chr1:165513244-165533198:+,leucine_rich_repeat_containing_52	NCIH1694_LUNG	0.12	1	0.1476	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PPOX--LRRC52	1	16	PPOX	2718	chr1:161137917:+	LRRC52	12889	chr1:165532742:+	ONLY_REF_SPLICE	NO	78	0	0.18	1	0.0114	0.1816	PPOX->chr1:161136200-161147803:+,protoporphyrinogen_oxidase,LRRC52->chr1:165513244-165533198:+,leucine_rich_repeat_containing_52	NCIH1694_LUNG	0.18	1	0.193	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	FCF1P7--SLAMF1	4	2	FCF1P7	1430	chr1:243430992:-	SLAMF1	9093	chr1:160593976:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0.0227	FCF1P7->FCF1_pseudogene_7,chr1:243430559-243431421:-,SLAMF1->chr1:160577890-160617085:-,signaling_lymphocytic_activation_molecule_family_member_1	NCIH1694_LUNG	1	1	0.0681	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PIP5K1B--PGM5	4	2	PIP5K1B	1104	chr9:71320678:+	PGM5	39800	chr9:70999314:+	ONLY_REF_SPLICE	YES	0	96	1	0.06	0.0454	0.0227	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},PIP5K1B->chr9:71320575-71624092:+,phosphatidylinositol-4-phosphate_5-kinase_type_1_beta,PGM5->chr9:70943224-71145977:+,phosphoglucomutase_5	NCIH1694_LUNG	0.06	1	0.0681	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ANKRD28--TBC1D5	2	9	ANKRD28	1395	chr3:15900884:-	TBC1D5	58758	chr3:17603634:-	ONLY_REF_SPLICE	YES	9	21	0.55	0.34	0.0227	0.1022	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH1694_LUNG	0.34	0.55	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ANKRD28--TBC1D5	1	11	ANKRD28	1395	chr3:15900884:-	TBC1D5	50863	chr3:17688548:-	ONLY_REF_SPLICE	YES	9	27	0.57	0.31	0.0114	0.1249	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH1694_LUNG	0.31	0.57	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MGST3--PBX1	3	1	MGST3	1433	chr1:165600530:+	PBX1	37736	chr1:164651547:+	ONLY_REF_SPLICE	YES	12	32	0.25	0.11	0.0341	0.0114	MGST3->chr1:165600098-165631033:+,microsomal_glutathione_S-transferase_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	NCIH1694_LUNG	0.11	0.25	0.0455	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	RP11-554J4.1--AC012358.8	3	1	RP11-554J4.1	1070	chr2:55845113:+	AC012358.8	4783	chr2:55535945:+	INCL_NON_REF_SPLICE	YES	1	12	0.8	0.25	0.0341	0.0114	RP11-554J4.1->chr2:55845044-55845508:+,AC012358.8->chr2:55535628-55573185:+	NCIH1694_LUNG	0.25	0.8	0.0455	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	NCOR2--SCARB1	3	0	NCOR2	2329	chr12:125020111:-	SCARB1	67583	chr12:125302253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	YOSHIHARA_TCGA_num_samples[BRCA:1|LAML:1|LUAD:2],NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1	NCIH1694_LUNG	1	1	0.0341	TRUE	0	2	0	1	1	TRUE	ACH-000431
NCIH1694_LUNG	PAX6--CCDC73	3	0	PAX6	12409	chr11:31822239:-	CCDC73	27006	chr11:32781804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	PAX6->Oncogene{Bushman},chr11:31806340-31839509:-,paired_box_6,CCDC73->chr11:32623792-32816204:-,coiled-coil_domain_containing_73	NCIH1694_LUNG	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	CD84--C1orf198	2	1	CD84	1125	chr1:160549182:-	C1orf198	19305	chr1:231004661:-	ONLY_REF_SPLICE	YES	1	21	0.75	0.12	0.0227	0.0114	CD84->CD84_molecule,chr1:160510885-160549306:-,C1orf198->chr1:230972865-231005335:-,chromosome_1_open_reading_frame_198	NCIH1694_LUNG	0.12	0.75	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ADARB2--PFKFB3	2	0	ADARB2	1426	chr10:1779245:-	PFKFB3	25690	chr10:6255586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ADARB2->Oncogene{Bushman},adenosine_deaminase,_RNA_specific_B2_(inactive),chr10:1228073-1779670:-,PFKFB3->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_3,chr10:6186881-6277495:+	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ANKRD28--TBC1D5	1	4	ANKRD28	1395	chr3:15900884:-	TBC1D5	64279	chr3:17470011:-	ONLY_REF_SPLICE	NO	9	43	0.36	0.1	0.0114	0.0454	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH1694_LUNG	0.1	0.36	0.0568	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	CMPK1--SCP2	2	0	CMPK1	4045	chr1:47834287:+	SCP2	14293	chr1:53407468:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CMPK1->chr1:47799469-47844511:+,cytidine/uridine_monophosphate_kinase_1,SCP2->chr1:53392901-53517375:+,sterol_carrier_protein_2	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	KIAA1429--KIF1A	2	0	KIAA1429	1145	chr8:95565613:-	KIF1A	72001	chr2:241666357:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	KIAA1429->KIAA1429,chr8:95499921-95565757:-,KIF1A->chr2:241653181-241759725:-,kinesin_family_member_1A	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PABPC4--TSNAX	2	0	PABPC4	6723	chr1:40034474:-	TSNAX	24717	chr1:231696874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4,TSNAX->chr1:231664399-231702270:+,translin-associated_factor_X	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PPP1R12C--UBE2S	2	0	PPP1R12C	14682	chr19:55603590:-	UBE2S	22526	chr19:55913130:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,UBE2S->chr19:55912652-55919145:-,ubiquitin_conjugating_enzyme_E2_S	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	RP11-338C15.3--INTS7	2	0	RP11-338C15.3	1848	chr1:212837929:-	INTS7	13614	chr1:212161345:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RP11-338C15.3->chr1:212827341-212838776:-,INTS7->chr1:212113741-212208884:-,integrator_complex_subunit_7	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	STMN3--CTBP1	2	0	STMN3	1101	chr20:62284680:-	CTBP1	12699	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	STMN3->chr20:62271061-62284780:-,stathmin_3,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ZC3H7A--GSPT1	2	0	ZC3H7A	2049	chr16:11890075:-	GSPT1	34209	chr16:11984996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:-:[70862],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,GSPT1->G1_to_S_phase_transition_1,Oncogene{Bushman},chr16:11961985-12009939:-	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ZC3H7A--GSPT1	2	0	ZC3H7A	1144	chr16:11890980:-	GSPT1	34209	chr16:11984996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:-:[70862],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,GSPT1->G1_to_S_phase_transition_1,Oncogene{Bushman},chr16:11961985-12009939:-	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	VWDE--PHF14	1	2	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	11	94	0.21	0.03	0.0114	0.0227	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1694_LUNG	0.03	0.21	0.0341	TRUE	0	6	0	17	2	TRUE	ACH-000431
NCIH1694_LUNG	NOS1AP--RAD51AP2	1	1	NOS1AP	2581	chr1:162124266:+	RAD51AP2	29884	chr2:17692222:-	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0114	0.0114	NOS1AP->chr1:162039564-162353321:+,nitric_oxide_synthase_1_adaptor_protein,RAD51AP2->RAD51_associated_protein_2,chr2:17691851-17699706:-	NCIH1694_LUNG	0.11	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000431
SBC5_LUNG	RPS6KB1--VMP1	925	448	RPS6KB1	1240	chr17:57970686:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	62	641	0.96	0.68	9.9811	4.8341	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.68	0.96	14.8152	TRUE	0	2	0	6	2	TRUE	ACH-000670
SBC5_LUNG	JAM3--KIRREL3	143	18	JAM3	1235	chr11:133939054:+	KIRREL3	19539	chr11:126432807:-	ONLY_REF_SPLICE	YES	47	0	0.77	1	1.543	0.1942	HGNC_GENEFAM,JAM3->chr11:133938820-134021896:+,junctional_adhesion_molecule_3,KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila)	SBC5_LUNG	0.77	1	1.7372	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	11	449	RPS6KB1	1839	chr17:57971285:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	66	641	0.87	0.42	0.1187	4.8449	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.42	0.87	4.9636	TRUE	0	2	0	6	2	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	3	448	RPS6KB1	1240	chr17:57970686:+	VMP1	32861	chr17:57842308:+	INCL_NON_REF_SPLICE	YES	62	692	0.88	0.39	0.0324	4.8341	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.39	0.88	4.8665	TRUE	0	2	0	6	2	TRUE	ACH-000670
SBC5_LUNG	DNAJB6--WNT2	80	46	DNAJB6	2764	chr7:157129838:+	WNT2	34011	chr7:116960847:-	ONLY_REF_SPLICE	YES	291	0	0.3	1	0.8632	0.4964	DNAJB6->DnaJ_heat_shock_protein_family_(Hsp40)_member_B6,chr7:157128075-157210133:+,WNT2->Oncogene{Bushman},Wnt_family_member_2,chr7:116916685-116963343:-	SBC5_LUNG	0.3	1	1.3596	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	37	175	RPS6KB1	1240	chr17:57970686:+	VMP1	34053	chr17:57851115:+	ONLY_REF_SPLICE	YES	62	796	0.77	0.21	0.3992	1.8883	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.21	0.77	2.2875	TRUE	0	3	0	2	0	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	19	234	RPS6KB1	1240	chr17:57970686:+	VMP1	32966	chr17:57842413:+	ONLY_REF_SPLICE	YES	62	538	0.8	0.32	0.205	2.525	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.32	0.8	2.73	TRUE	0	2	0	6	2	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	64	30	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	62	1220	0.6	0.07	0.6906	0.3237	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.07	0.6	1.0143	TRUE	0	9	0	11	6	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	2	235	RPS6KB1	1839	chr17:57971285:+	VMP1	32966	chr17:57842413:+	ONLY_REF_SPLICE	YES	66	538	0.78	0.31	0.0216	2.5358	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.31	0.78	2.5574	TRUE	0	2	0	6	2	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	3	211	RPS6KB1	1153	chr17:57970599:+	VMP1	32883	chr17:57842330:+	INCL_NON_REF_SPLICE	YES	59	691	0.78	0.24	0.0324	2.2768	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.24	0.78	2.3092	TRUE	0	2	0	6	2	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	27	86	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	62	1048	0.65	0.1	0.2913	0.928	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.1	0.65	1.2193	TRUE	0	9	0	10	6	TRUE	ACH-000670
SBC5_LUNG	PCBP1-AS1--AC016700.5	28	13	PCBP1-AS1	4300	chr2:70312679:-	AC016700.5	40215	chr2:70351557:-	ONLY_REF_SPLICE	YES	66	23	0.38	0.64	0.3021	0.1403	LOCAL_REARRANGEMENT:-:[35190],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,AC016700.5->chr2:70351168-70352449:-	SBC5_LUNG	0.38	0.64	0.4424	TRUE	0	1	0	1	1	TRUE	ACH-000670
SBC5_LUNG	CELF1--MTCH2	18	9	CELF1	13174	chr11:47508302:-	MTCH2	34243	chr11:47657123:-	ONLY_REF_SPLICE	YES	101	224	0.21	0.11	0.1942	0.0971	YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[51746],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	SBC5_LUNG	0.11	0.21	0.2913	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	16	7	CNTN1	1151	chr12:41086394:+	MUC19	121261	chr12:40950947:+	ONLY_REF_SPLICE	YES	208	13	0.1	0.64	0.1726	0.0755	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.1	0.64	0.2481	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	DNAJB6--WNT2	12	17	DNAJB6	2764	chr7:157129838:+	WNT2	35336	chr7:116955402:-	ONLY_REF_SPLICE	YES	291	24	0.09	0.55	0.1295	0.1834	DNAJB6->DnaJ_heat_shock_protein_family_(Hsp40)_member_B6,chr7:157128075-157210133:+,WNT2->Oncogene{Bushman},Wnt_family_member_2,chr7:116916685-116963343:-	SBC5_LUNG	0.09	0.55	0.3129	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--LRRK2	13	4	CNTN1	1151	chr12:41086394:+	LRRK2	82556	chr12:40728769:+	ONLY_REF_SPLICE	YES	208	2	0.08	0.89	0.1403	0.0432	CNTN1->chr12:41086244-41466220:+,contactin_1,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	SBC5_LUNG	0.08	0.89	0.1835	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	PCBP1-AS1--AC016700.5	10	15	PCBP1-AS1	12795	chr2:70286775:-	AC016700.5	40215	chr2:70351557:-	ONLY_REF_SPLICE	YES	66	23	0.27	0.52	0.1079	0.1619	LOCAL_REARRANGEMENT:-:[35190],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,AC016700.5->chr2:70351168-70352449:-	SBC5_LUNG	0.27	0.52	0.2698	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	4	30	RPS6KB1	1839	chr17:57971285:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	66	1220	0.34	0.03	0.0432	0.3237	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.03	0.34	0.3669	TRUE	0	9	0	11	6	TRUE	ACH-000670
SBC5_LUNG	DNAJB6--WNT2	4	17	DNAJB6	2764	chr7:157129838:+	WNT2	35340	chr7:116955398:-	INCL_NON_REF_SPLICE	YES	291	23	0.07	0.48	0.0432	0.1834	DNAJB6->DnaJ_heat_shock_protein_family_(Hsp40)_member_B6,chr7:157128075-157210133:+,WNT2->Oncogene{Bushman},Wnt_family_member_2,chr7:116916685-116963343:-	SBC5_LUNG	0.07	0.48	0.2266	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	NRG1--RP11-11N9.4	7	4	NRG1	3961	chr8:32406344:+	RP11-11N9.4	29999	chr8:32899153:+	ONLY_REF_SPLICE	YES	208	17	0.05	0.39	0.0755	0.0432	NRG1->chr8:31496902-32622548:+,neuregulin_1,RP11-11N9.4->chr8:32853696-32902373:+	SBC5_LUNG	0.05	0.39	0.1187	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	FAM172A--BACH2	7	3	FAM172A	12880	chr5:93111865:-	BACH2	33632	chr6:90648069:-	ONLY_REF_SPLICE	YES	6	1	0.62	0.91	0.0755	0.0324	FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,BACH2->BTB_domain_and_CNC_homolog_2,Oncogene{Bushman},chr6:90636248-91006627:-	SBC5_LUNG	0.62	0.91	0.1079	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	PDE5A--NDNF	7	1	PDE5A	1472	chr4:120549675:-	NDNF	39833	chr4:121966993:-	ONLY_REF_SPLICE	YES	52	1	0.13	0.89	0.0755	0.0108	PDE5A->chr4:120415550-120550146:-,phosphodiesterase_5A,NDNF->chr4:121956768-121994176:-,neuron-derived_neurotrophic_factor	SBC5_LUNG	0.13	0.89	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	2	21	RPS6KB1	1240	chr17:57970686:+	VMP1	40168	chr17:57915673:+	ONLY_REF_SPLICE	YES	62	1191	0.27	0.02	0.0216	0.2266	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.02	0.27	0.2482	TRUE	0	9	0	11	6	TRUE	ACH-000670
SBC5_LUNG	CNTN1--LRRK2	6	4	CNTN1	1151	chr12:41086394:+	LRRK2	81455	chr12:40722162:+	ONLY_REF_SPLICE	YES	208	0	0.05	1	0.0647	0.0432	CNTN1->chr12:41086244-41466220:+,contactin_1,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	SBC5_LUNG	0.05	1	0.1079	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	ZNF143--IPO7	7	0	ZNF143	1758	chr11:9482623:+	IPO7	38137	chr11:9450087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0755	0	LOCAL_REARRANGEMENT:+:[12193],ZNF143->chr11:9481866-9550071:+,zinc_finger_protein_143,IPO7->chr11:9406169-9469673:+,importin_7	SBC5_LUNG	1	1	0.0755	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	PCBP1-AS1--AC016700.3	6	2	PCBP1-AS1	12795	chr2:70286775:-	AC016700.3	39619	chr2:70330056:-	ONLY_REF_SPLICE	YES	66	0	0.11	1	0.0647	0.0216	LOCAL_REARRANGEMENT:-:[5048],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,AC016700.3->chr2:70321026-70330352:-	SBC5_LUNG	0.11	1	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	PCBP1-AS1--AC016700.5	3	14	PCBP1-AS1	5481	chr2:70310639:-	AC016700.5	40215	chr2:70351557:-	ONLY_REF_SPLICE	YES	61	23	0.22	0.42	0.0324	0.1511	LOCAL_REARRANGEMENT:-:[35190],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,AC016700.5->chr2:70351168-70352449:-	SBC5_LUNG	0.22	0.42	0.1835	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	4	8	CNTN1	1151	chr12:41086394:+	MUC19	103816	chr12:40927035:+	ONLY_REF_SPLICE	YES	208	8	0.05	0.6	0.0432	0.0863	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.05	0.6	0.1295	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	TDG--LRRC53	3	11	TDG	4592	chr12:104370838:+	LRRC53	17531	chr1:74949059:-	ONLY_REF_SPLICE	YES	62	0	0.18	1	0.0324	0.1187	TDG->chr12:104359582-104382652:+,thymine_DNA_glycosylase,LRRC53->chr1:74935562-74978298:-,leucine_rich_repeat_containing_53	SBC5_LUNG	0.18	1	0.1511	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	NRG1--RP11-11N9.4	4	6	NRG1	3961	chr8:32406344:+	RP11-11N9.4	28883	chr8:32853719:+	INCL_NON_REF_SPLICE	YES	208	0	0.05	1	0.0432	0.0647	NRG1->chr8:31496902-32622548:+,neuregulin_1,RP11-11N9.4->chr8:32853696-32902373:+	SBC5_LUNG	0.05	1	0.1079	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	TDG--LRRC53	3	9	TDG	1257	chr12:104359838:+	LRRC53	17531	chr1:74949059:-	ONLY_REF_SPLICE	YES	79	0	0.13	1	0.0324	0.0971	TDG->chr12:104359582-104382652:+,thymine_DNA_glycosylase,LRRC53->chr1:74935562-74978298:-,leucine_rich_repeat_containing_53	SBC5_LUNG	0.13	1	0.1295	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	4	4	CNTN1	1151	chr12:41086394:+	MUC19	123251	chr12:40953037:+	ONLY_REF_SPLICE	YES	208	11	0.04	0.42	0.0432	0.0432	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.42	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	DPYD--PROK1	4	1	DPYD	1166	chr1:98386440:-	PROK1	35669	chr1:110996583:+	ONLY_REF_SPLICE	YES	63	0	0.07	1	0.0432	0.0108	DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,PROK1->chr1:110993822-110999976:+,prokineticin_1	SBC5_LUNG	0.07	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	PCBP1-AS1--AC016700.3	4	1	PCBP1-AS1	4300	chr2:70312679:-	AC016700.3	39619	chr2:70330056:-	ONLY_REF_SPLICE	YES	66	0	0.07	1	0.0432	0.0108	LOCAL_REARRANGEMENT:-:[5048],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,AC016700.3->chr2:70321026-70330352:-	SBC5_LUNG	0.07	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	PCBP1-AS1--AC016700.3	4	0	PCBP1-AS1	4300	chr2:70312679:-	AC016700.3	40860	chr2:70322191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:-:[5048],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,AC016700.3->chr2:70321026-70330352:-	SBC5_LUNG	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	2	7	CNTN1	1151	chr12:41086394:+	MUC19	111145	chr12:40935421:+	ONLY_REF_SPLICE	YES	208	5	0.04	0.64	0.0216	0.0755	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.64	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	2	7	CNTN1	1151	chr12:41086394:+	MUC19	116661	chr12:40940937:+	ONLY_REF_SPLICE	YES	208	9	0.04	0.5	0.0216	0.0755	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.5	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	1	8	CNTN1	1151	chr12:41086394:+	MUC19	104739	chr12:40927958:+	ONLY_REF_SPLICE	YES	208	10	0.04	0.47	0.0108	0.0863	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.47	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	1	8	CNTN1	1151	chr12:41086394:+	MUC19	103608	chr12:40926827:+	ONLY_REF_SPLICE	YES	208	7	0.04	0.56	0.0108	0.0863	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.56	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	SNHG8--SKI	3	0	SNHG8	1429	chr4:119200292:+	SKI	9424	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	SBC5_LUNG	1	1	0.0324	TRUE	0	1	0	2	0	TRUE	ACH-000670
SBC5_LUNG	TDG--LRRC53	2	4	TDG	1257	chr12:104359838:+	LRRC53	18645	chr1:74946652:-	ONLY_REF_SPLICE	YES	79	3	0.07	0.67	0.0216	0.0432	TDG->chr12:104359582-104382652:+,thymine_DNA_glycosylase,LRRC53->chr1:74935562-74978298:-,leucine_rich_repeat_containing_53	SBC5_LUNG	0.07	0.67	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	1	7	CNTN1	1151	chr12:41086394:+	MUC19	115482	chr12:40939758:+	ONLY_REF_SPLICE	YES	208	17	0.04	0.32	0.0108	0.0755	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.32	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	1	7	CNTN1	1151	chr12:41086394:+	MUC19	113315	chr12:40937591:+	ONLY_REF_SPLICE	YES	208	9	0.04	0.47	0.0108	0.0755	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.47	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	PACS1--BBS1	2	2	PACS1	1480	chr11:65838313:+	BBS1	32931	chr11:66281877:+	ONLY_REF_SPLICE	YES	6	13	0.4	0.24	0.0216	0.0216	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,BBS1->Bardet-Biedl_syndrome_1,chr11:66278077-66301098:+	SBC5_LUNG	0.24	0.4	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	TDG--RP11-439H8.4	2	1	TDG	1257	chr12:104359838:+	RP11-439H8.4	17549	chr1:74834803:-	ONLY_REF_SPLICE	YES	79	0	0.04	1	0.0216	0.0108	TDG->chr12:104359582-104382652:+,thymine_DNA_glycosylase,RP11-439H8.4->chr1:74807263-74844486:-	SBC5_LUNG	0.04	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	OXSR1--MYD88	2	0	OXSR1	4080	chr3:38232330:+	MYD88	28028	chr3:38181355:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_REARRANGEMENT:+:[22067],OXSR1->chr3:38206580-38296979:+,oxidative_stress_responsive_1,MYD88->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:38179969-38184513:+,myeloid_differentiation_primary_response_88	SBC5_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	PCM1--DRG2	2	0	PCM1	10959	chr8:17797370:+	DRG2	56646	chr17:18001584:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1,DRG2->chr17:17991200-18011285:+,developmentally_regulated_GTP_binding_protein_2	SBC5_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	TMEM223--SLC3A2	2	0	TMEM223	1343	chr11:62559151:-	SLC3A2	16887	chr11:62650380:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_INVERSION:-:+:[64025],TMEM223->chr11:62539101-62559493:-,transmembrane_protein_223,SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2	SBC5_LUNG	1	1	0.0216	TRUE	0	1	0	3	0	TRUE	ACH-000670
SBC5_LUNG	ZRANB2--DNM3OS	2	0	ZRANB2	7616	chr1:71534959:-	DNM3OS	16197	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ZRANB2->chr1:71528974-71546980:-,zinc_finger_RANBP2-type_containing_2,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	SBC5_LUNG	1	1	0.0216	TRUE	0	2	0	1	1	TRUE	ACH-000670
SBC5_LUNG	AUNIP--STMN1	1	3	AUNIP	1133	chr1:26185771:-	STMN1	11606	chr1:26231229:-	ONLY_REF_SPLICE	YES	16	32	0.2	0.11	0.0108	0.0324	LOCAL_REARRANGEMENT:-:[24769],AUNIP->aurora_kinase_A_and_ninein_interacting_protein,chr1:26158414-26185903:-,STMN1->chr1:26210672-26233482:-,stathmin_1	SBC5_LUNG	0.11	0.2	0.0432	TRUE	0	1	0	1	1	TRUE	ACH-000670
SBC5_LUNG	FAM172A--BACH2	1	3	FAM172A	14010	chr5:93073518:-	BACH2	33632	chr6:90648069:-	ONLY_REF_SPLICE	YES	6	1	0.4	0.8	0.0108	0.0324	FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,BACH2->BTB_domain_and_CNC_homolog_2,Oncogene{Bushman},chr6:90636248-91006627:-	SBC5_LUNG	0.4	0.8	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	TCEANC--RP11-142G7.2	1	2	TCEANC	3409	chrX:13677887:+	RP11-142G7.2	23415	chrX:13391636:+	ONLY_REF_SPLICE	YES	6	15	0.33	0.17	0.0108	0.0216	TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing,RP11-142G7.2->chrX:13353360-13391753:+	SBC5_LUNG	0.17	0.33	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	TCEANC--RP11-142G7.2	1	2	TCEANC	4501	chrX:13679241:+	RP11-142G7.2	23415	chrX:13391636:+	ONLY_REF_SPLICE	NO	7	15	0.3	0.17	0.0108	0.0216	TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing,RP11-142G7.2->chrX:13353360-13391753:+	SBC5_LUNG	0.17	0.3	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	LPHN3--SUCLA2	1	1	LPHN3	13509	chr4:62679607:+	SUCLA2	53303	chr13:48563116:-	ONLY_REF_SPLICE	NO	2	54	0.5	0.04	0.0108	0.0108	LPHN3->chr4:62066976-62944053:+,SUCLA2->chr13:48510622-48612125:-,succinate-CoA_ligase_ADP-forming_beta_subunit	SBC5_LUNG	0.04	0.5	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	PDE4B--FOXP2	1	1	PDE4B	5807	chr1:66458825:+	FOXP2	50104	chr7:114268595:+	ONLY_REF_SPLICE	YES	20	0	0.09	1	0.0108	0.0108	PDE4B->chr1:66258197-66840259:+,phosphodiesterase_4B,FOXP2->chr7:113726382-114333827:+,forkhead_box_P2	SBC5_LUNG	0.09	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	RARB--AC133680.1	1	1	RARB	1244	chr3:25216066:+	AC133680.1	22874	chr3:25215610:+	ONLY_REF_SPLICE	YES	30	8	0.06	0.2	0.0108	0.0108	LOCAL_REARRANGEMENT:+:[27],RARB->Oncogene{Bushman},chr3:25215823-25639423:+,retinoic_acid_receptor_beta,AC133680.1->chr3:24729410-25215796:+	SBC5_LUNG	0.06	0.2	0.0216	TRUE	0	1	0	2	1	TRUE	ACH-000670
EBC1_LUNG	MYO5C--SHC4	440	320	MYO5C	1189	chr15:52587807:-	SHC4	53321	chr15:49217146:-	ONLY_REF_SPLICE	YES	27	0	0.97	1	3.9296	2.8579	{Klijn_CCL:Lung=1},MYO5C->chr15:52484519-52587995:-,myosin_VC,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	EBC1_LUNG	0.97	1	6.7875	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	CHMP1A--FANCA	110	22	CHMP1A	1264	chr16:89723990:-	FANCA	40959	chr16:89818630:-	ONLY_REF_SPLICE	YES	127	46	0.51	0.74	0.9824	0.1965	LOCAL_REARRANGEMENT:-:[79704],CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-,FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-	EBC1_LUNG	0.51	0.74	1.1789	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	CENPM--PACSIN2	109	19	CENPM	4336	chr22:42339614:-	PACSIN2	16815	chr22:43308163:-	ONLY_REF_SPLICE	YES	331	128	0.28	0.5	0.9735	0.1697	CENPM->centromere_protein_M,chr22:42334725-42343168:-,PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2	EBC1_LUNG	0.28	0.5	1.1432	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	FANCA--CDK10	87	59	FANCA	29280	chr16:89824985:-	CDK10	48667	chr16:89755660:+	ONLY_REF_SPLICE	YES	38	73	0.79	0.67	0.777	0.5269	LOCAL_INVERSION:-:+:[41185],FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-,CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10	EBC1_LUNG	0.67	0.79	1.3039	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	B9D1--CD82	88	29	B9D1	11860	chr17:19247103:-	CD82	27328	chr11:44621708:+	ONLY_REF_SPLICE	YES	66	72	0.64	0.62	0.7859	0.259	B9D1->B9_protein_domain_1,chr17:19240867-19281495:-,CD82->CD82_molecule,Oncogene{Bushman},chr11:44585977-44641913:+	EBC1_LUNG	0.62	0.64	1.0449	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MRPS14--TNR	83	2	MRPS14	1062	chr1:174992500:-	TNR	13828	chr1:175375913:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.7413	0.0179	MRPS14->chr1:174979925-174992561:-,mitochondrial_ribosomal_protein_S14,TNR->Oncogene{Bushman},chr1:175284330-175712906:-,tenascin_R	EBC1_LUNG	0.99	1	0.7592	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ZNF106--RP11-138E16.1	67	14	ZNF106	5542	chr15:42749156:-	RP11-138E16.1	37274	chr15:49239382:+	ONLY_REF_SPLICE	YES	31	0	0.72	1	0.5984	0.125	ZNF106->chr15:42705021-42783321:-,zinc_finger_protein_106,RP11-138E16.1->chr15:49230433-49240228:+	EBC1_LUNG	0.72	1	0.7234	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	TANC1--PKP4	65	17	TANC1	3335	chr2:159922483:+	PKP4	51090	chr2:159488265:+	ONLY_REF_SPLICE	YES	8	56	0.91	0.59	0.5805	0.1518	YOSHIHARA_TCGA_num_samples[BRCA:1|OV:1],{Klijn_CCL:Lung=1},TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,PKP4->chr2:159313476-159539391:+,plakophilin_4	EBC1_LUNG	0.59	0.91	0.7323	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MGA--GABRB3	60	16	MGA	13640	chr15:42005694:+	GABRB3	55370	chr15:26866681:-	ONLY_REF_SPLICE	YES	32	18	0.7	0.81	0.5359	0.1429	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,GABRB3->chr15:26788693-27184686:-,gamma-aminobutyric_acid_type_A_receptor_beta3_subunit	EBC1_LUNG	0.7	0.81	0.6788	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	FANCA--CDK10	55	35	FANCA	29280	chr16:89824985:-	CDK10	49968	chr16:89756961:+	ONLY_REF_SPLICE	YES	38	125	0.7	0.42	0.4912	0.3126	LOCAL_INVERSION:-:+:[41185],FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-,CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10	EBC1_LUNG	0.42	0.7	0.8038	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ZNF227--GAB2	51	34	ZNF227	3044	chr19:44717397:+	GAB2	19865	chr11:77991947:-	ONLY_REF_SPLICE	YES	27	1	0.76	0.99	0.4555	0.3037	ZNF227->chr19:44711700-44741421:+,zinc_finger_protein_227,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	EBC1_LUNG	0.76	0.99	0.7592	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MYO5C--SHC4	9	170	MYO5C	1189	chr15:52587807:-	SHC4	54392	chr15:49183008:-	ONLY_REF_SPLICE	YES	27	3	0.87	0.98	0.0804	1.5183	{Klijn_CCL:Lung=1},MYO5C->chr15:52484519-52587995:-,myosin_VC,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	EBC1_LUNG	0.87	0.98	1.5987	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ANTXR2--TNFSF10	32	18	ANTXR2	20257	chr4:80905973:-	TNFSF10	37955	chr3:172232788:-	ONLY_REF_SPLICE	YES	37	11	0.57	0.82	0.2858	0.1608	ANTXR2->anthrax_toxin_receptor_2,chr4:80822303-81046608:-,TNFSF10->Oncogene{Bushman},chr3:172223298-172241297:-,tumor_necrosis_factor_superfamily_member_10	EBC1_LUNG	0.57	0.82	0.4466	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	C18orf25--GREB1L	30	7	C18orf25	5870	chr18:43833786:+	GREB1L	16349	chr18:18945988:+	ONLY_REF_SPLICE	YES	20	1	0.65	0.97	0.2679	0.0625	C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,GREB1L->chr18:18822203-19105378:+,growth_regulation_by_estrogen_in_breast_cancer-like	EBC1_LUNG	0.65	0.97	0.3304	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MYO5C--SHC4	2	108	MYO5C	1189	chr15:52587807:-	SHC4	55456	chr15:49176564:-	ONLY_REF_SPLICE	YES	27	75	0.8	0.59	0.0179	0.9645	{Klijn_CCL:Lung=1},MYO5C->chr15:52484519-52587995:-,myosin_VC,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	EBC1_LUNG	0.59	0.8	0.9824	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	RIPK1--RP1-90J20.11	25	9	RIPK1	5617	chr6:3081350:+	RP1-90J20.11	20985	chr6:3026987:+	INCL_NON_REF_SPLICE	YES	48	6	0.41	0.85	0.2233	0.0804	LOCAL_REARRANGEMENT:+:[36566],RIPK1->chr6:3064225-3115421:+,receptor_interacting_serine/threonine_kinase_1,RP1-90J20.11->chr6:3025025-3027659:+	EBC1_LUNG	0.41	0.85	0.3037	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ANTXR2--TNFSF10	13	24	ANTXR2	20257	chr4:80905973:-	TNFSF10	34643	chr3:172241243:-	INCL_NON_REF_SPLICE	YES	37	0	0.5	1	0.1161	0.2143	ANTXR2->anthrax_toxin_receptor_2,chr4:80822303-81046608:-,TNFSF10->Oncogene{Bushman},chr3:172223298-172241297:-,tumor_necrosis_factor_superfamily_member_10	EBC1_LUNG	0.5	1	0.3304	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	CENPM--PACSIN2	16	12	CENPM	2940	chr22:42341229:-	PACSIN2	16815	chr22:43308163:-	ONLY_REF_SPLICE	YES	368	128	0.07	0.18	0.1429	0.1072	CENPM->centromere_protein_M,chr22:42334725-42343168:-,PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2	EBC1_LUNG	0.07	0.18	0.2501	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	OTUD7A--CKMT1B	17	7	OTUD7A	1283	chr15:32162710:-	CKMT1B	23606	chr15:43885280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1518	0.0625	OTUD7A->OTU_deubiquitinase_7A,chr15:31775329-32162992:-,CKMT1B->chr15:43885252-43897099:+,creatine_kinase,_mitochondrial_1B	EBC1_LUNG	1	1	0.2143	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	BCL2L13--EP300	16	7	BCL2L13	7470	chr22:18171908:+	EP300	27924	chr22:41525894:+	ONLY_REF_SPLICE	YES	2	30	0.92	0.43	0.1429	0.0625	BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	EBC1_LUNG	0.43	0.92	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	BCL2L13--EP300	14	10	BCL2L13	9983	chr22:18178976:+	EP300	27924	chr22:41525894:+	ONLY_REF_SPLICE	YES	2	30	0.92	0.44	0.125	0.0893	BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	EBC1_LUNG	0.44	0.92	0.2143	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	RP1-283E3.4--PRKCZ	13	13	RP1-283E3.4	1252	chr1:1656202:+	PRKCZ	20383	chr1:2029786:+	ONLY_REF_SPLICE	YES	0	11	1	0.7	0.1161	0.1161	RP1-283E3.4->chr1:1655951-1668690:+,PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta	EBC1_LUNG	0.7	1	0.2322	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MGA--GABRB3	12	16	MGA	13640	chr15:42005694:+	GABRB3	50745	chr15:26887675:-	ONLY_REF_SPLICE	YES	32	0	0.47	1	0.1072	0.1429	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,GABRB3->chr15:26788693-27184686:-,gamma-aminobutyric_acid_type_A_receptor_beta3_subunit	EBC1_LUNG	0.47	1	0.2501	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ZNF227--GAB2	7	34	ZNF227	3044	chr19:44717397:+	GAB2	16579	chr11:78075149:-	ONLY_REF_SPLICE	YES	27	1	0.6	0.98	0.0625	0.3037	ZNF227->chr19:44711700-44741421:+,zinc_finger_protein_227,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	EBC1_LUNG	0.6	0.98	0.3662	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ANTXR2--TNFSF10	12	12	ANTXR2	19212	chr4:80929675:-	TNFSF10	37955	chr3:172232788:-	ONLY_REF_SPLICE	YES	35	11	0.41	0.69	0.1072	0.1072	ANTXR2->anthrax_toxin_receptor_2,chr4:80822303-81046608:-,TNFSF10->Oncogene{Bushman},chr3:172223298-172241297:-,tumor_necrosis_factor_superfamily_member_10	EBC1_LUNG	0.41	0.69	0.2144	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ZDHHC9--RP4-537K23.4	13	7	ZDHHC9	2953	chrX:128975755:-	RP4-537K23.4	19015	chrX:129063871:-	ONLY_REF_SPLICE	YES	131	0	0.13	1	0.1161	0.0625	LOCAL_REARRANGEMENT:-:[25155],ZDHHC9->chrX:128937264-128977885:-,zinc_finger_DHHC-type_containing_9,RP4-537K23.4->chrX:129003040-129091504:-	EBC1_LUNG	0.13	1	0.1786	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	CHMP1A--FANCA	12	10	CHMP1A	1264	chr16:89723990:-	FANCA	42044	chr16:89816310:-	ONLY_REF_SPLICE	YES	127	38	0.15	0.37	0.1072	0.0893	LOCAL_REARRANGEMENT:-:[79704],CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-,FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-	EBC1_LUNG	0.15	0.37	0.1965	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	B9D1--CD82	5	15	B9D1	10469	chr17:19250582:-	CD82	27328	chr11:44621708:+	ONLY_REF_SPLICE	YES	73	72	0.22	0.22	0.0447	0.134	B9D1->B9_protein_domain_1,chr17:19240867-19281495:-,CD82->CD82_molecule,Oncogene{Bushman},chr11:44585977-44641913:+	EBC1_LUNG	0.22	0.22	0.1787	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	FANCA--CDK10	6	10	FANCA	28151	chr16:89828357:-	CDK10	49968	chr16:89756961:+	ONLY_REF_SPLICE	YES	45	125	0.26	0.11	0.0536	0.0893	LOCAL_INVERSION:-:+:[41185],FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-,CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10	EBC1_LUNG	0.11	0.26	0.1429	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MYO5C--SHC4	2	25	MYO5C	1189	chr15:52587807:-	SHC4	59083	chr15:49164339:-	ONLY_REF_SPLICE	YES	27	170	0.5	0.14	0.0179	0.2233	{Klijn_CCL:Lung=1},MYO5C->chr15:52484519-52587995:-,myosin_VC,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	EBC1_LUNG	0.14	0.5	0.2412	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MGA--GABRB3	4	16	MGA	13640	chr15:42005694:+	GABRB3	53043	chr15:26870681:-	ONLY_REF_SPLICE	YES	32	17	0.38	0.54	0.0357	0.1429	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,GABRB3->chr15:26788693-27184686:-,gamma-aminobutyric_acid_type_A_receptor_beta3_subunit	EBC1_LUNG	0.38	0.54	0.1786	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	RIPK1--RP1-90J20.11	5	9	RIPK1	6846	chr6:3083547:+	RP1-90J20.11	20985	chr6:3026987:+	INCL_NON_REF_SPLICE	YES	34	6	0.29	0.7	0.0447	0.0804	LOCAL_REARRANGEMENT:+:[36566],RIPK1->chr6:3064225-3115421:+,receptor_interacting_serine/threonine_kinase_1,RP1-90J20.11->chr6:3025025-3027659:+	EBC1_LUNG	0.29	0.7	0.1251	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MRPS14--TNR	6	3	MRPS14	1154	chr1:174992408:-	TNR	13828	chr1:175375913:-	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0536	0.0268	MRPS14->chr1:174979925-174992561:-,mitochondrial_ribosomal_protein_S14,TNR->Oncogene{Bushman},chr1:175284330-175712906:-,tenascin_R	EBC1_LUNG	0.6	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	WWOX--DBNDD1	5	0	WWOX	6262	chr16:78149051:+	DBNDD1	36599	chr16:90075838:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,DBNDD1->chr16:90071273-90086536:-,dysbindin_(dystrobrevin_binding_protein_1)_domain_containing_1	EBC1_LUNG	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	BCL2L13--EP300	4	3	BCL2L13	5215	chr22:18166087:+	EP300	27924	chr22:41525894:+	ONLY_REF_SPLICE	YES	0	30	1	0.19	0.0357	0.0268	BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	EBC1_LUNG	0.19	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	KDM4B--CYP4F22	4	3	KDM4B	28507	chr19:5144913:+	CYP4F22	36837	chr19:15634504:+	ONLY_REF_SPLICE	YES	8	0	0.47	1	0.0357	0.0268	KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,CYP4F22->chr19:15619304-15663128:+,cytochrome_P450_family_4_subfamily_F_member_22	EBC1_LUNG	0.47	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	C18orf25--GREB1L	4	1	C18orf25	3563	chr18:43796561:+	GREB1L	17459	chr18:18963471:+	ONLY_REF_SPLICE	YES	34	2	0.13	0.71	0.0357	0.0089	C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,GREB1L->chr18:18822203-19105378:+,growth_regulation_by_estrogen_in_breast_cancer-like	EBC1_LUNG	0.13	0.71	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	B9D1--CD82	1	12	B9D1	11860	chr17:19247103:-	CD82	29031	chr11:44626608:+	ONLY_REF_SPLICE	YES	66	51	0.16	0.2	0.0089	0.1072	B9D1->B9_protein_domain_1,chr17:19240867-19281495:-,CD82->CD82_molecule,Oncogene{Bushman},chr11:44585977-44641913:+	EBC1_LUNG	0.16	0.2	0.1161	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	BCL2L13--EP300	3	1	BCL2L13	4107	chr22:18138598:+	EP300	27924	chr22:41525894:+	ONLY_REF_SPLICE	YES	9	30	0.31	0.12	0.0268	0.0089	BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	EBC1_LUNG	0.12	0.31	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ELF2--EGFLAM	3	1	ELF2	20589	chr4:139979823:-	EGFLAM	35872	chr5:38406228:+	INCL_NON_REF_SPLICE	YES	6	0	0.4	1	0.0268	0.0089	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+	EBC1_LUNG	0.4	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	OTUD7A--CKMT1B	1	7	OTUD7A	1283	chr15:32162710:-	CKMT1B	23611	chr15:43885285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0089	0.0625	OTUD7A->OTU_deubiquitinase_7A,chr15:31775329-32162992:-,CKMT1B->chr15:43885252-43897099:+,creatine_kinase,_mitochondrial_1B	EBC1_LUNG	1	1	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	AGRN--NOC4L	2	1	AGRN	4732	chr1:970704:+	NOC4L	29706	chr12:132635526:+	ONLY_REF_SPLICE	YES	189	120	0.02	0.02	0.0179	0.0089	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],{Klijn_CCL:Breast=1,Lung=1},AGRN->agrin,chr1:955503-991496:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	EBC1_LUNG	0.02	0.02	0.0268	TRUE	0	12	0	2	3	TRUE	ACH-000563
EBC1_LUNG	ABCC1--DDB2	2	0	ABCC1	13852	chr16:16150152:+	DDB2	50083	chr11:47259388:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2	EBC1_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	AC005775.2--PIP5K1C	2	0	AC005775.2	1438	chr19:507376:-	PIP5K1C	11057	chr19:3661081:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	AC005775.2->chr19:490046-507813:-,PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma	EBC1_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	C18orf25--GREB1L	1	4	C18orf25	3563	chr18:43796561:+	GREB1L	16349	chr18:18945988:+	ONLY_REF_SPLICE	YES	34	1	0.13	0.83	0.0089	0.0357	C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,GREB1L->chr18:18822203-19105378:+,growth_regulation_by_estrogen_in_breast_cancer-like	EBC1_LUNG	0.13	0.83	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	CHMP1A--FANCA	2	0	CHMP1A	1264	chr16:89723990:-	FANCA	48119	chr16:89807274:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	LOCAL_REARRANGEMENT:-:[79704],CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-,FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-	EBC1_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MGA--GABRB3	2	0	MGA	2480	chr15:41952723:+	GABRB3	58355	chr15:26828561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,GABRB3->chr15:26788693-27184686:-,gamma-aminobutyric_acid_type_A_receptor_beta3_subunit	EBC1_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	AC074363.1--B3GALT1	1	1	AC074363.1	2265	chr2:168346787:+	B3GALT1	7585	chr2:168725321:+	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0089	0.0089	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	EBC1_LUNG	0.5	1	0.0178	TRUE	0	0	0	2	0	TRUE	ACH-000563
EBC1_LUNG	ELF2--EGFLAM	1	1	ELF2	18934	chr4:139981478:-	EGFLAM	35872	chr5:38406228:+	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.0089	0.0089	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+	EBC1_LUNG	0.04	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000563
SW403_LARGE_INTESTINE	DNAJC3--VWA8	27	3	DNAJC3	4510	chr13:96377506:+	VWA8	23656	chr13:42465723:-	ONLY_REF_SPLICE	YES	2	17	0.94	0.64	0.4779	0.0531	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8	SW403_LARGE_INTESTINE	0.64	0.94	0.531	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	CDH17--WDR48	3	0	CDH17	15403	chr8:95164140:-	WDR48	45867	chr3:39137534:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	CDH17->cadherin_17,chr8:95139399-95229531:-,WDR48->WD_repeat_domain_48,chr3:39093489-39138155:+	SW403_LARGE_INTESTINE	1	1	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	GBA--SLC25A25	3	0	GBA	8906	chr1:155204766:-	SLC25A25	24345	chr9:130871061:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	GBA->chr1:155204243-155214490:-,glucosylceramidase_beta,SLC25A25->chr9:130830480-130871524:+,solute_carrier_family_25_member_25	SW403_LARGE_INTESTINE	1	1	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	PCDH1--HDAC2	3	0	PCDH1	8686	chr5:141243226:-	HDAC2	34640	chr6:114264574:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	PCDH1->chr5:141232938-141258811:-,protocadherin_1,HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2	SW403_LARGE_INTESTINE	1	1	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	AGPAT3--NDUFV3	2	0	AGPAT3	14510	chr21:45379740:+	NDUFV3	41146	chr21:44328974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	ARHGAP12--GNPAT	2	0	ARHGAP12	1132	chr10:32217611:-	GNPAT	35464	chr1:231406504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	ARHGAP12->Rho_GTPase_activating_protein_12,chr10:32094365-32217742:-,GNPAT->chr1:231376953-231413719:+,glyceronephosphate_O-acyltransferase	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	CSTB--LMNB1	2	0	CSTB	1242	chr21:45196085:-	LMNB1	19858	chr5:126168386:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	CSTB->Oncogene{Bushman},chr21:45192393-45196326:-,cystatin_B,LMNB1->chr5:126112315-126172712:+,lamin_B1	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	DLEU2--MRPS28	2	0	DLEU2	1419	chr13:50699438:-	MRPS28	20141	chr8:80831383:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),MRPS28->chr8:80830952-80942524:-,mitochondrial_ribosomal_protein_S28	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	LEPR--SNRPD1	2	0	LEPR	2252	chr1:65891061:+	SNRPD1	37664	chr18:19202686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	LEPR->chr1:65886248-66107242:+,leptin_receptor,SNRPD1->chr18:19192228-19210417:+,small_nuclear_ribonucleoprotein_D1_polypeptide	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	MCM3AP--PCNT	2	0	MCM3AP	7597	chr21:47695100:-	PCNT	49226	chr21:47783395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[37825],MCM3AP->chr21:47655047-47706211:-,minichromosome_maintenance_complex_component_3_associated_protein,PCNT->chr21:47744036-47865682:+,pericentrin	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	NPNT--PPA2	2	0	NPNT	3050	chr4:106819158:+	PPA2	38003	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Thyroid=5,Artery_-_Tibial=2,Artery_-_Aorta=2,Lung=1},NPNT->chr4:106815932-106925184:+,nephronectin,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	1	5	1	3	1	TRUE	ACH-000820
SW403_LARGE_INTESTINE	RP11-304L19.5--MAT2B	2	0	RP11-304L19.5	1216	chr16:2205144:-	MAT2B	7076	chr5:162939008:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	RP11-304L19.5->chr16:2204798-2205359:-,MAT2B->chr5:162930120-162946342:+,methionine_adenosyltransferase_2B	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	RSBN1L-AS1--ATIC	2	0	RSBN1L-AS1	2497	chr7:77314519:-	ATIC	19407	chr2:216199642:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	RSBN1L-AS1->chr7:77286977-77325582:-,ATIC->5-aminoimidazole-4-carboxamide_ribonucleotide_formyltransferase/IMP_cyclohydrolase,Oncogene{Bushman},chr2:216176540-216214487:+	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	WWP2--SASH1	2	0	WWP2	14499	chr16:69905834:+	SASH1	48211	chr6:148835460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	ST6GALNAC1--RPL30	1	1	ST6GALNAC1	1331	chr17:74639590:-	RPL30	14509	chr8:99057627:-	ONLY_REF_SPLICE	YES	36	2	0.05	0.5	0.0177	0.0177	ST6GALNAC1->Oncogene{Bushman},ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_1,chr17:74620843-74639920:-,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	SW403_LARGE_INTESTINE	0.05	0.5	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
GSS_STOMACH	GNPTAB--NUP37	622	268	GNPTAB	1380	chr12:102224337:-	NUP37	39420	chr12:102471281:-	ONLY_REF_SPLICE	YES	87	266	0.91	0.77	7.0635	3.0435	GNPTAB->N-acetylglucosamine-1-phosphate_transferase_alpha_and_beta_subunits,chr12:102139275-102224716:-,NUP37->chr12:102467967-102513902:-,nucleoporin_37kDa	GSS_STOMACH	0.77	0.91	10.107	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	417	513	FAM102A	13152	chr9:130703794:-	RP11-395P17.3	17526	chr9:130880576:-	INCL_NON_REF_SPLICE	YES	164	10	0.85	0.99	4.7355	5.8257	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.85	0.99	10.5612	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SLC1A5--SLCO4A1	106	0	SLC1A5	9682	chr19:47278320:-	SLCO4A1	24996	chr20:61303381:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2038	0	HGNC_GENEFAM,SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1	GSS_STOMACH	1	1	1.2038	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	GNPTAB--NUP37	24	270	GNPTAB	1380	chr12:102224337:-	NUP37	38262	chr12:102472994:-	ONLY_REF_SPLICE	YES	87	281	0.77	0.51	0.2725	3.0662	GNPTAB->N-acetylglucosamine-1-phosphate_transferase_alpha_and_beta_subunits,chr12:102139275-102224716:-,NUP37->chr12:102467967-102513902:-,nucleoporin_37kDa	GSS_STOMACH	0.51	0.77	3.3387	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	PPP1R10--MDC1	64	55	PPP1R10	10244	chr6:30572365:-	MDC1	24208	chr6:30676134:-	ONLY_REF_SPLICE	YES	119	110	0.5	0.52	0.7268	0.6246	LOCAL_REARRANGEMENT:-:[81195],PPP1R10->chr6:30568177-30586389:-,protein_phosphatase_1_regulatory_subunit_10,MDC1->chr6:30667584-30685666:-,mediator_of_DNA_damage_checkpoint_1	GSS_STOMACH	0.5	0.52	1.3514	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SLCO3A1--AC068831.10	50	52	SLCO3A1	5545	chr15:92459688:+	AC068831.10	32633	chr15:91573889:+	ONLY_REF_SPLICE	YES	596	6	0.15	0.94	0.5678	0.5905	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,AC068831.10->chr15:91565849-91579841:+	GSS_STOMACH	0.15	0.94	1.1583	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ZCCHC14--DOCK3	50	35	ZCCHC14	13538	chr16:87445122:-	DOCK3	23877	chr3:50879106:+	ONLY_REF_SPLICE	YES	94	0	0.47	1	0.5678	0.3975	ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	GSS_STOMACH	0.47	1	0.9653	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SIPA1L3--ZNF569	55	0	SIPA1L3	4162	chr19:38519796:+	ZNF569	42317	chr19:37956375:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6246	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,ZNF569->Oncogene{Bushman},chr19:37902057-37960177:-,zinc_finger_protein_569	GSS_STOMACH	1	1	0.6246	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	RALGPS2--RASAL2	43	25	RALGPS2	1255	chr1:178694554:+	RASAL2	39191	chr1:178359235:+	ONLY_REF_SPLICE	YES	111	11	0.38	0.86	0.4883	0.2839	HGNC_GENEFAM,RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+,RASAL2->Oncogene{Bushman},RAS_protein_activator_like_2,chr1:178062864-178448644:+	GSS_STOMACH	0.38	0.86	0.7722	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	AP003900.6--AC008132.1	41	25	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	7	0	0.9	1	0.4656	0.2839	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	GSS_STOMACH	0.9	1	0.7495	TRUE	0	0	0	16	0	TRUE	ACH-000746
GSS_STOMACH	GNPTAB--NUP37	30	60	GNPTAB	1313	chr12:102224404:-	NUP37	39420	chr12:102471281:-	INCL_NON_REF_SPLICE	YES	14	266	0.87	0.25	0.3407	0.6814	GNPTAB->N-acetylglucosamine-1-phosphate_transferase_alpha_and_beta_subunits,chr12:102139275-102224716:-,NUP37->chr12:102467967-102513902:-,nucleoporin_37kDa	GSS_STOMACH	0.25	0.87	1.0221	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ATXN7L3--IGF2	39	0	ATXN7L3	6307	chr17:42272175:-	IGF2	22861	chr11:2153287:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4429	0	ATXN7L3->ataxin_7_like_3,chr17:42269173-42277481:-,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	GSS_STOMACH	1	1	0.4429	TRUE	0	0	0	2	0	TRUE	ACH-000746
GSS_STOMACH	PPP1R10--MDC1	31	24	PPP1R10	10244	chr6:30572365:-	MDC1	25111	chr6:30675231:-	ONLY_REF_SPLICE	YES	119	136	0.32	0.29	0.352	0.2725	LOCAL_REARRANGEMENT:-:[81195],PPP1R10->chr6:30568177-30586389:-,protein_phosphatase_1_regulatory_subunit_10,MDC1->chr6:30667584-30685666:-,mediator_of_DNA_damage_checkpoint_1	GSS_STOMACH	0.29	0.32	0.6245	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	PPA1--NPFFR1	28	22	PPA1	4713	chr10:71977568:-	NPFFR1	17564	chr10:72026147:-	ONLY_REF_SPLICE	YES	1224	0	0.04	1	0.318	0.2498	LOCAL_REARRANGEMENT:-:[13418],PPA1->chr10:71962586-71993667:-,pyrophosphatase_(inorganic)_1,NPFFR1->chr10:72007085-72043432:-,neuropeptide_FF_receptor_1	GSS_STOMACH	0.04	1	0.5678	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	TNIP1--SLC36A2	28	7	TNIP1	22804	chr5:150413169:-	SLC36A2	35593	chr5:150712883:-	ONLY_REF_SPLICE	YES	35	0	0.5	1	0.318	0.0795	TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-,SLC36A2->chr5:150694539-150727151:-,solute_carrier_family_36_member_2	GSS_STOMACH	0.5	1	0.3975	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ZCCHC14--DOCK3	17	48	ZCCHC14	15337	chr16:87443247:-	DOCK3	23877	chr3:50879106:+	INCL_NON_REF_SPLICE	YES	63	0	0.51	1	0.1931	0.5451	ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	GSS_STOMACH	0.51	1	0.7382	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	BIN3--CTD-3247F14.2	23	21	BIN3	6488	chr8:22487477:-	CTD-3247F14.2	20440	chr8:22537739:-	INCL_NON_REF_SPLICE	YES	168	1	0.21	0.98	0.2612	0.2385	LOCAL_REARRANGEMENT:-:[9865],BIN3->bridging_integrator_3,chr8:22477931-22526661:-,CTD-3247F14.2->chr8:22536526-22541522:-	GSS_STOMACH	0.21	0.98	0.4997	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	AP003900.6--AC008132.1	22	16	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	7	20	0.84	0.66	0.2498	0.1817	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	GSS_STOMACH	0.66	0.84	0.4315	TRUE	0	0	0	13	0	TRUE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	14	40	FAM102A	11688	chr9:130705258:-	RP11-395P17.3	17705	chr9:130880397:-	INCL_NON_REF_SPLICE	YES	740	113	0.07	0.32	0.159	0.4542	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.07	0.32	0.6132	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	15	30	FAM102A	11528	chr9:130705418:-	RP11-395P17.3	17705	chr9:130880397:-	INCL_NON_REF_SPLICE	YES	538	113	0.08	0.28	0.1703	0.3407	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.08	0.28	0.511	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CAP1--RP11-69E11.8	22	0	CAP1	1569	chr1:40506473:+	RP11-69E11.8	18207	chr1:40036152:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2498	0	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,RP11-69E11.8->chr1:40030832-40038875:+	GSS_STOMACH	1	1	0.2498	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	GMCL1--ANXA4	19	12	GMCL1	11029	chr2:70082092:+	ANXA4	44087	chr2:70047831:+	ONLY_REF_SPLICE	YES	98	108	0.24	0.22	0.2158	0.1363	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[3178],GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,ANXA4->annexin_A4,chr2:69871557-70053596:+	GSS_STOMACH	0.22	0.24	0.3521	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	16	22	FAM102A	10052	chr9:130706894:-	RP11-395P17.3	17705	chr9:130880397:-	INCL_NON_REF_SPLICE	YES	796	113	0.05	0.25	0.1817	0.2498	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.05	0.25	0.4315	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	NAA25--ZNF569	3	69	NAA25	1307	chr12:112546520:-	ZNF569	38661	chr19:37956375:-	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.0341	0.7836	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,ZNF569->Oncogene{Bushman},chr19:37902057-37960177:-,zinc_finger_protein_569	GSS_STOMACH	0.97	1	0.8177	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CCND3--TRERF1	15	18	CCND3	2857	chr6:42016239:-	TRERF1	16958	chr6:42330817:-	ONLY_REF_SPLICE	YES	67	15	0.33	0.69	0.1703	0.2044	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	GSS_STOMACH	0.33	0.69	0.3747	TRUE	0	3	0	1	3	TRUE	ACH-000746
GSS_STOMACH	SLCO3A1--AC068831.10	5	58	SLCO3A1	5545	chr15:92459688:+	AC068831.10	31855	chr15:91573111:+	ONLY_REF_SPLICE	YES	596	1	0.1	0.98	0.0568	0.6587	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,AC068831.10->chr15:91565849-91579841:+	GSS_STOMACH	0.1	0.98	0.7155	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SLCO3A1--AC068831.10	6	53	SLCO3A1	5545	chr15:92459688:+	AC068831.10	32105	chr15:91573361:+	ONLY_REF_SPLICE	YES	596	7	0.09	0.89	0.0681	0.6019	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,AC068831.10->chr15:91565849-91579841:+	GSS_STOMACH	0.09	0.89	0.67	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SMG5--IGSF9	16	12	SMG5	17196	chr1:156222680:-	IGSF9	31908	chr1:159901696:-	INCL_NON_REF_SPLICE	YES	331	27	0.08	0.51	0.1817	0.1363	SMG5->SMG5_nonsense_mediated_mRNA_decay_factor,chr1:156219015-156252620:-,IGSF9->chr1:159896829-159915386:-,immunoglobulin_superfamily_member_9	GSS_STOMACH	0.08	0.51	0.318	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SLCO3A1--AC068831.10	4	59	SLCO3A1	5545	chr15:92459688:+	AC068831.10	30196	chr15:91566543:+	ONLY_REF_SPLICE	YES	596	0	0.1	1	0.0454	0.67	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,AC068831.10->chr15:91565849-91579841:+	GSS_STOMACH	0.1	1	0.7154	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	7	37	FAM102A	11618	chr9:130705328:-	RP11-395P17.3	17705	chr9:130880397:-	INCL_NON_REF_SPLICE	YES	781	113	0.05	0.28	0.0795	0.4202	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.05	0.28	0.4997	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	AP003900.6--AC008132.1	4	46	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	26	0	0.66	1	0.0454	0.5224	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	GSS_STOMACH	0.66	1	0.5678	TRUE	0	0	0	11	0	TRUE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	5	40	FAM102A	11836	chr9:130705110:-	RP11-395P17.3	17705	chr9:130880397:-	INCL_NON_REF_SPLICE	YES	642	113	0.07	0.28	0.0568	0.4542	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.07	0.28	0.511	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	PSKH1--NFATC3	12	8	PSKH1	7080	chr16:67962684:+	NFATC3	23619	chr16:68215378:+	INCL_NON_REF_SPLICE	YES	57	241	0.26	0.08	0.1363	0.0908	PSKH1->chr16:67927175-67963581:+,protein_serine_kinase_H1,NFATC3->Oncogene{Bushman},chr16:68118654-68263162:+,nuclear_factor_of_activated_T-cells_3	GSS_STOMACH	0.08	0.26	0.2271	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ZNRF3--EMID1	12	5	ZNRF3	3718	chr22:29383189:+	EMID1	20692	chr22:29610915:+	ONLY_REF_SPLICE	YES	91	27	0.16	0.39	0.1363	0.0568	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,EMID1->EMI_domain_containing_1,chr22:29601840-29655586:+	GSS_STOMACH	0.16	0.39	0.1931	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ZCCHC14--DOCK3	3	37	ZCCHC14	14806	chr16:87443778:-	DOCK3	23877	chr3:50879106:+	INCL_NON_REF_SPLICE	YES	114	0	0.26	1	0.0341	0.4202	ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	GSS_STOMACH	0.26	1	0.4543	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	4	29	FAM102A	11482	chr9:130705464:-	RP11-395P17.3	17705	chr9:130880397:-	INCL_NON_REF_SPLICE	YES	622	113	0.05	0.23	0.0454	0.3293	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.05	0.23	0.3747	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	3	30	FAM102A	11541	chr9:130705405:-	RP11-395P17.3	17703	chr9:130880399:-	INCL_NON_REF_SPLICE	YES	555	113	0.06	0.23	0.0341	0.3407	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.06	0.23	0.3748	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CCND3--TRERF1	5	21	CCND3	7748	chr6:41908108:-	TRERF1	16958	chr6:42330817:-	ONLY_REF_SPLICE	YES	100	15	0.21	0.63	0.0568	0.2385	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	GSS_STOMACH	0.21	0.63	0.2953	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	AP003900.6--AC008132.1	3	28	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	26	20	0.54	0.61	0.0341	0.318	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	GSS_STOMACH	0.54	0.61	0.3521	TRUE	0	0	0	13	0	TRUE	ACH-000746
GSS_STOMACH	BIN3--EGR3	7	11	BIN3	8631	chr8:22483173:-	EGR3	18751	chr8:22548721:-	INCL_NON_REF_SPLICE	YES	170	0	0.1	1	0.0795	0.1249	LOCAL_REARRANGEMENT:-:[18511],BIN3->bridging_integrator_3,chr8:22477931-22526661:-,EGR3->Oncogene{Bushman},chr8:22545172-22550815:-,early_growth_response_3	GSS_STOMACH	0.1	1	0.2044	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	PSKH1--NFATC3	9	3	PSKH1	4241	chr16:67943609:+	NFATC3	23619	chr16:68215378:+	ONLY_REF_SPLICE	YES	41	241	0.23	0.05	0.1022	0.0341	PSKH1->chr16:67927175-67963581:+,protein_serine_kinase_H1,NFATC3->Oncogene{Bushman},chr16:68118654-68263162:+,nuclear_factor_of_activated_T-cells_3	GSS_STOMACH	0.05	0.23	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CAP1--RP11-69E11.8	8	0	CAP1	1551	chr1:40506455:+	RP11-69E11.8	18207	chr1:40036152:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0908	0	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,RP11-69E11.8->chr1:40030832-40038875:+	GSS_STOMACH	1	1	0.0908	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	TNIP1--SLC36A2	7	3	TNIP1	21410	chr5:150414563:-	SLC36A2	35593	chr5:150712883:-	ONLY_REF_SPLICE	YES	56	0	0.15	1	0.0795	0.0341	TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-,SLC36A2->chr5:150694539-150727151:-,solute_carrier_family_36_member_2	GSS_STOMACH	0.15	1	0.1136	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ZCCHC14--DOCK3	1	27	ZCCHC14	13538	chr16:87445122:-	DOCK3	24918	chr3:50927457:+	ONLY_REF_SPLICE	YES	94	0	0.23	1	0.0114	0.3066	ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	GSS_STOMACH	0.23	1	0.318	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CAP1--RP11-69E11.8	6	5	CAP1	2261	chr1:40507165:+	RP11-69E11.8	18207	chr1:40036152:+	ONLY_REF_SPLICE	YES	17	0	0.39	1	0.0681	0.0568	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,RP11-69E11.8->chr1:40030832-40038875:+	GSS_STOMACH	0.39	1	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	AP003900.6--AC008132.1	2	20	AP003900.6	2187	chr21:11172043:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	NO	21	20	0.51	0.52	0.0227	0.2271	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	GSS_STOMACH	0.51	0.52	0.2498	TRUE	0	0	0	3	0	TRUE	ACH-000746
GSS_STOMACH	CCND3--TRERF1	2	19	CCND3	6666	chr6:41909190:-	TRERF1	16958	chr6:42330817:-	ONLY_REF_SPLICE	YES	85	15	0.2	0.58	0.0227	0.2158	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	GSS_STOMACH	0.2	0.58	0.2385	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	BIN3--EGR3	4	6	BIN3	6488	chr8:22487477:-	EGR3	18815	chr8:22548657:-	INCL_NON_REF_SPLICE	YES	168	0	0.06	1	0.0454	0.0681	LOCAL_REARRANGEMENT:-:[18511],BIN3->bridging_integrator_3,chr8:22477931-22526661:-,EGR3->Oncogene{Bushman},chr8:22545172-22550815:-,early_growth_response_3	GSS_STOMACH	0.06	1	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CCND3--TRERF1	1	18	CCND3	4039	chr6:41997747:-	TRERF1	16958	chr6:42330817:-	ONLY_REF_SPLICE	NO	69	15	0.22	0.56	0.0114	0.2044	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	GSS_STOMACH	0.22	0.56	0.2158	TRUE	0	1	0	1	1	TRUE	ACH-000746
GSS_STOMACH	CCND3--TRERF1	1	15	CCND3	7748	chr6:41908108:-	TRERF1	18091	chr6:42268487:-	ONLY_REF_SPLICE	YES	100	15	0.14	0.52	0.0114	0.1703	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	GSS_STOMACH	0.14	0.52	0.1817	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	C9orf3--IGF2	4	0	C9orf3	35879	chr9:97845789:+	IGF2	52309	chr11:2152800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	GSS_STOMACH	1	1	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CPSF6--PGBD2	4	0	CPSF6	11046	chr12:69656342:+	PGBD2	23586	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	GSS_STOMACH	1	1	0.0454	TRUE	0	7	0	6	2	TRUE	ACH-000746
GSS_STOMACH	DANCR--CUX1	3	0	DANCR	1530	chr4:53579126:+	CUX1	12487	chr7:101559395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	GSS_STOMACH	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	EXOC2--ACTG1	3	0	EXOC2	27750	chr6:497412:-	ACTG1	37934	chr17:79479816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	EXOC2->chr6:485133-693117:-,exocyst_complex_component_2,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	GSS_STOMACH	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	HCN2--SHC2	3	0	HCN2	1685	chr19:590577:+	SHC2	22583	chr19:425231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	HCN2->chr19:589893-617159:+,hyperpolarization_activated_cyclic_nucleotide_gated_potassium_channel_2,SHC2->SHC_(Src_homology_2_domain_containing)_transforming_protein_2,chr19:416583-460996:-	GSS_STOMACH	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	RP11-1055B8.3--PCYT2	3	0	RP11-1055B8.3	2479	chr17:79355677:-	PCYT2	12413	chr17:79865733:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	RP11-1055B8.3->chr17:79349801-79359160:-,PCYT2->chr17:79858841-79869340:-,phosphate_cytidylyltransferase_2,_ethanolamine	GSS_STOMACH	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ALDH1A2--YBX1	2	0	ALDH1A2	3568	chr15:58712170:-	YBX1	42918	chr1:43149074:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ALDH1A2->aldehyde_dehydrogenase_1_family_member_A2,chr15:58245622-58790065:-,YBX1->Oncogene{Bushman},Y-box_binding_protein_1,chr1:43148098-43168020:+	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ARHGEF4--BMP4	2	0	ARHGEF4	1077	chr2:131594565:+	BMP4	29765	chr14:54420118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+,BMP4->bone_morphogenetic_protein_4,chr14:54416454-54425479:-	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CPSF6--FNBP4	2	0	CPSF6	11046	chr12:69656342:+	FNBP4	32288	chr11:47753113:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Muscle_-_Skeletal=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	DTYMK--ATG4B	2	0	DTYMK	1338	chr2:242626069:-	ATG4B	21075	chr2:242606060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[1885],DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase,ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	5	0	TRUE	ACH-000746
GSS_STOMACH	KIF26B--SMYD3	2	0	KIF26B	2699	chr1:245319985:+	SMYD3	63393	chr1:245927451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	GSS_STOMACH	1	1	0.0227	TRUE	0	5	0	2	2	TRUE	ACH-000746
GSS_STOMACH	KRT18P59--CHEK1	2	0	KRT18P59	2785	chr11:124984841:+	CHEK1	20034	chr11:125523641:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	KRT18P59->chr11:124983057-124996677:+,keratin_18_pseudogene_59,CHEK1->ArcherDX_panel,FoundationOne_panel,checkpoint_kinase_1,chr11:125495036-125546150:+	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	NOC4L--PTMS	2	0	NOC4L	2218	chr12:132630210:+	PTMS	13871	chr12:6878769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,PTMS->chr12:6874682-6880116:+,parathymosin	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	NUPL2--TNKS	2	0	NUPL2	3987	chr7:23226765:+	TNKS	29929	chr8:9564321:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,TNKS->chr8:9413424-9639856:+,tankyrase	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	RP11-429J17.5--ZNF623	2	0	RP11-429J17.5	1109	chr8:144800953:-	ZNF623	6164	chr8:144732068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_INVERSION:-:+:[64516],RP11-429J17.5->chr8:144800416-144801061:-,ZNF623->chr8:144718183-144735900:+,zinc_finger_protein_623	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	TMLHE--VAMP7	2	0	TMLHE	2332	chrX:154842453:-	VAMP7	21383	chrX:155149477:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,VAMP7->chrX:155110956-155173433:+,chrY:59213962-59276439:+,vesicle_associated_membrane_protein_7	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	TPD52--LAPTM4B	2	0	TPD52	6214	chr8:81083660:-	LAPTM4B	31437	chr8:98817581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ZFP90--CREBZF	2	0	ZFP90	1245	chr16:68564237:+	CREBZF	23836	chr11:85371641:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZFP90->ZFP90_zinc_finger_protein,chr16:68563993-68609975:+,CREBZF->CREB/ATF_bZIP_transcription_factor,chr11:85370752-85393951:-	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ATXN7--THOC7	1	1	ATXN7	7042	chr3:63938159:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	NO	23	13	0.08	0.13	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	GSS_STOMACH	0.08	0.13	0.0228	TRUE	0	3	0	1	1	TRUE	ACH-000746
GSS_STOMACH	RP11-17A1.3--PTDSS2	1	1	RP11-17A1.3	6007	chr11:22942195:+	PTDSS2	16301	chr11:460187:+	ONLY_REF_SPLICE	YES	0	12	1	0.14	0.0114	0.0114	RP11-17A1.3->chr11:22850926-22966939:+,PTDSS2->chr11:448268-491393:+,phosphatidylserine_synthase_2	GSS_STOMACH	0.14	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SOX2-OT--FXR1	1	1	SOX2-OT	7662	chr3:180893371:+	FXR1	45184	chr3:180651122:+	ONLY_REF_SPLICE	YES	4	16	0.33	0.11	0.0114	0.0114	LOCAL_REARRANGEMENT:+:[7017],SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+,FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+	GSS_STOMACH	0.11	0.33	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000746
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLEKHB2--TEX41	25	2	PLEKHB2	5988	chr2:131878551:+	TEX41	53816	chr2:145929565:+	ONLY_REF_SPLICE	YES	36	0	0.43	1	0.3585	0.0287	PLEKHB2->chr2:131862420-132111282:+,pleckstrin_homology_domain_containing_B2,TEX41->chr2:145425534-145940216:+,testis_expressed_41_(non-protein_coding)	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.3872	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--SEPT7	6	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.086	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.086	TRUE	1	1	0	18	1	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--NOP58	4	0	C17orf76-AS1	1593	chr17:16342728:+	NOP58	24073	chr2:203160397:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0574	0	C17orf76-AS1->chr17:16342136-16381992:+,NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0574	TRUE	0	0	0	2	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARGLU1--ING1	2	0	ARGLU1	1592	chr13:107219921:-	ING1	16348	chr13:111371576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ARGLU1->arginine_and_glutamate_rich_1,chr13:107194021-107220512:-,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGDIB--RPL17	2	0	ARHGDIB	1192	chr12:15114471:-	RPL17	13918	chr18:47017954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ARHGDIB->Rho_GDP_dissociation_inhibitor_beta,chr12:15094951-15114662:-,RPL17->chr18:47014851-47018906:-,ribosomal_protein_L17	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--SON	2	0	CPSF6	11046	chr12:69656342:+	SON	32263	chr21:34931536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SON->SON_DNA_binding_protein,chr21:34914924-34949812:+	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IARS--BUB1	2	0	IARS	1316	chr9:95055723:-	BUB1	60024	chr2:111399811:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,BUB1->BUB1_mitotic_checkpoint_serine/threonine_kinase,Oncogene{Bushman},chr2:111395275-111435691:-	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF169--DYNC1LI1	2	0	ZNF169	3852	chr9:97055351:+	DYNC1LI1	16694	chr3:32587457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ZNF169->chr9:97021593-97063736:+,zinc_finger_protein_169,DYNC1LI1->chr3:32567463-32612366:-,dynein_cytoplasmic_1_light_intermediate_chain_1	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF252P--PLA2G4B	2	0	ZNF252P	7765	chr8:146219865:-	PLA2G4B	20647	chr15:42129973:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ZNF252P->chr8:146198975-146228281:-,zinc_finger_protein_252,_pseudogene,PLA2G4B->chr15:42120283-42140345:+,phospholipase_A2_group_IVB	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATXN7--THOC7	1	1	ATXN7	3640	chr3:63884173:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	YES	1	12	0.67	0.14	0.0143	0.0143	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.67	0.0286	TRUE	0	2	0	5	2	TRUE	ACH-000583
BFTC905_URINARY_TRACT	PIK3CB--CLSTN2	61	24	PIK3CB	1244	chr3:138553537:-	CLSTN2	36406	chr3:140122471:+	ONLY_REF_SPLICE	YES	11	0	0.89	1	0.6949	0.2734	PIK3CB->ArcherDX_panel,FoundationOne_panel,chr3:138372860-138553780:-,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_beta,CLSTN2->calsyntenin_2,chr3:139654027-140296239:+	BFTC905_URINARY_TRACT	0.89	1	0.9683	TRUE	0	0	0	1	0	TRUE	ACH-000802
BFTC905_URINARY_TRACT	RP11-993B23.3--TAF1D	42	25	RP11-993B23.3	2495	chr12:28122449:+	TAF1D	15387	chr11:93466568:-	INCL_NON_REF_SPLICE	YES	17	236	0.8	0.22	0.4784	0.2848	RP11-993B23.3->chr12:28111450-28122746:+,TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-	BFTC905_URINARY_TRACT	0.22	0.8	0.7632	TRUE	0	0	0	1	0	TRUE	ACH-000802
BFTC905_URINARY_TRACT	AC024560.3--RP11-849I19.1	28	6	AC024560.3	6501	chr3:197346611:-	RP11-849I19.1	19917	chr18:76737429:-	ONLY_REF_SPLICE	YES	35	0	0.49	1	0.319	0.0683	AC024560.3->chr3:197305084-197354777:-,RP11-849I19.1->chr18:76736555-76739074:-	BFTC905_URINARY_TRACT	0.49	1	0.3873	TRUE	0	0	0	1	0	TRUE	ACH-000802
BFTC905_URINARY_TRACT	RP11-993B23.3--TAF1D	17	29	RP11-993B23.3	2788	chr12:28122742:+	TAF1D	15192	chr11:93466763:-	INCL_NON_REF_SPLICE	YES	0	228	1	0.17	0.1937	0.3304	RP11-993B23.3->chr12:28111450-28122746:+,TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-	BFTC905_URINARY_TRACT	0.17	1	0.5241	TRUE	0	0	0	1	0	TRUE	ACH-000802
BFTC905_URINARY_TRACT	CTD-2006C1.2--TMPRSS11A	5	7	CTD-2006C1.2	3469	chr19:12112637:+	TMPRSS11A	20610	chr4:68812289:-	ONLY_REF_SPLICE	YES	75	0	0.14	1	0.057	0.0797	CTD-2006C1.2->chr19:12098432-12157090:+,TMPRSS11A->chr4:68775103-68829858:-,transmembrane_protease,_serine_11A	BFTC905_URINARY_TRACT	0.14	1	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000802
BFTC905_URINARY_TRACT	CUL2--RP11-297A16.2	5	0	CUL2	1213	chr10:35379358:-	RP11-297A16.2	32735	chr10:35389988:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	LOCAL_REARRANGEMENT:-:[7364],CUL2->chr10:35297479-35379570:-,cullin_2,RP11-297A16.2->chr10:35386934-35415948:-	BFTC905_URINARY_TRACT	1	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000802
BFTC905_URINARY_TRACT	DLG1--BDH1	3	0	DLG1	5122	chr3:197009550:-	BDH1	51039	chr3:197260432:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Thyroid=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9]},GTEx_v2:{count=6;pct=0.07%;dist=Brain_-_Frontal_Cortex_(BA9)=1,Thyroid=1,Pituitary=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component,BDH1->3-hydroxybutyrate_dehydrogenase,_type_1,chr3:197236654-197300194:-	BFTC905_URINARY_TRACT	1	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000802
HS834T_FIBROBLAST	CTGF--ACTB	3	0	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS834T_FIBROBLAST	1	1	0.0382	TRUE	0	0	0	9	0	TRUE	ACH-000275
HS834T_FIBROBLAST	GALNS--ACSF3	3	0	GALNS	1213	chr16:88923166:-	ACSF3	30692	chr16:89169012:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0	GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase,ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+	HS834T_FIBROBLAST	1	1	0.0382	TRUE	0	0	0	2	0	TRUE	ACH-000275
HS834T_FIBROBLAST	SLC25A44--RHOA	3	0	SLC25A44	1159	chr1:156164038:+	RHOA	17387	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	HS834T_FIBROBLAST	1	1	0.0382	TRUE	0	0	0	1	0	TRUE	ACH-000275
HS834T_FIBROBLAST	GPR180--GPC6	2	0	GPR180	3530	chr13:95264644:+	GPC6	25421	chr13:94938603:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Lung=1},GPR180->G_protein-coupled_receptor_180,chr13:95254157-95286899:+,GPC6->chr13:93879095-95059655:+,glypican_6	HS834T_FIBROBLAST	1	1	0.0255	TRUE	0	0	0	2	0	TRUE	ACH-000275
HS834T_FIBROBLAST	KIRREL--GNAS	2	0	KIRREL	1456	chr1:157963518:+	GNAS	37093	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},KIRREL->chr1:157963063-158070052:+,kin_of_IRRE_like_(Drosophila),GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HS834T_FIBROBLAST	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000275
SNU668_STOMACH	EIF3A--SFXN4	1629	665	EIF3A	1177	chr10:120840140:-	SFXN4	34015	chr10:120914689:-	ONLY_REF_SPLICE	YES	230	207	0.91	0.92	16.3007	6.6544	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:-:[59963],EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A,SFXN4->chr10:120900279-120925179:-,sideroflexin_4	SNU668_STOMACH	0.91	0.92	22.9551	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	EIF3A--SFXN4	166	294	EIF3A	1177	chr10:120840140:-	SFXN4	35131	chr10:120907372:-	ONLY_REF_SPLICE	YES	230	287	0.67	0.62	1.6611	2.9419	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:-:[59963],EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A,SFXN4->chr10:120900279-120925179:-,sideroflexin_4	SNU668_STOMACH	0.62	0.67	4.603	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	DDR1--ABCF1	43	12	DDR1	15624	chr6:30862448:+	ABCF1	34524	chr6:30557465:+	ONLY_REF_SPLICE	YES	58	58	0.49	0.49	0.4303	0.1201	DDR1->Oncogene{Bushman},chr6:30844198-30867933:+,discoidin_domain_receptor_tyrosine_kinase_1,ABCF1->ATP_binding_cassette_subfamily_F_member_1,chr6:30539153-30564956:+	SNU668_STOMACH	0.49	0.49	0.5504	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	38	11	CTC-479C5.12	2221	chr16:67968700:-	LCAT	14058	chr16:67974381:-	ONLY_REF_SPLICE	YES	78	17	0.39	0.74	0.3802	0.1101	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.39	0.74	0.4903	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	PPP6R1--CTD-2369P2.10	39	6	PPP6R1	1561	chr19:55769803:-	CTD-2369P2.10	23724	chr19:10419226:-	ONLY_REF_SPLICE	YES	7	4	0.87	0.92	0.3903	0.06	PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1,CTD-2369P2.10->chr19:10416103-10426685:-	SNU668_STOMACH	0.87	0.92	0.4503	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	EIF3A--SFXN4	2	152	EIF3A	1177	chr10:120840140:-	SFXN4	36217	chr10:120905865:-	ONLY_REF_SPLICE	YES	230	551	0.4	0.22	0.02	1.521	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:-:[59963],EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A,SFXN4->chr10:120900279-120925179:-,sideroflexin_4	SNU668_STOMACH	0.22	0.4	1.541	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	LEMD3--CPNE8	30	4	LEMD3	2548	chr12:65564898:+	CPNE8	20249	chr12:39268313:-	ONLY_REF_SPLICE	YES	58	0	0.37	1	0.3002	0.04	LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+,CPNE8->chr12:39040624-39301232:-,copine_8	SNU668_STOMACH	0.37	1	0.3402	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	TBC1D1--RP11-83C7.2	25	15	TBC1D1	23572	chr4:38091738:+	RP11-83C7.2	42441	chr4:38495719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2502	0.1501	TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+,RP11-83C7.2->chr4:38422283-38524801:-	SNU668_STOMACH	1	1	0.4003	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	FBXL12--CARM1	26	9	FBXL12	2585	chr19:9929221:-	CARM1	12277	chr19:11015627:+	ONLY_REF_SPLICE	YES	26	91	0.57	0.28	0.2602	0.0901	FBXL12->F-box_and_leucine-rich_repeat_protein_12,chr19:9920943-9938492:-,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	SNU668_STOMACH	0.28	0.57	0.3503	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	24	14	CTC-479C5.12	2449	chr16:67968472:-	LCAT	14058	chr16:67974381:-	ONLY_REF_SPLICE	YES	3	17	0.93	0.69	0.2402	0.1401	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.69	0.93	0.3803	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	TBC1D1--RP11-83C7.2	18	13	TBC1D1	23572	chr4:38091738:+	RP11-83C7.2	43547	chr4:38455542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1801	0.1301	TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+,RP11-83C7.2->chr4:38422283-38524801:-	SNU668_STOMACH	1	1	0.3102	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	18	6	CTC-479C5.12	1722	chr16:67969199:-	LCAT	14058	chr16:67974381:-	ONLY_REF_SPLICE	YES	189	17	0.11	0.59	0.1801	0.06	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.11	0.59	0.2401	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	15	16	CTC-479C5.12	2946	chr16:67967975:-	LCAT	14058	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	6	17	0.84	0.65	0.1501	0.1601	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.65	0.84	0.3102	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	PLEKHF1--NTF4	14	13	PLEKHF1	3047	chr19:30158087:+	NTF4	9896	chr19:49567119:-	ONLY_REF_SPLICE	YES	8	0	0.77	1	0.1401	0.1301	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,NTF4->chr19:49559050-49568333:-,neurotrophin_4	SNU668_STOMACH	0.77	1	0.2702	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	10	14	CTC-479C5.12	2454	chr16:67968467:-	LCAT	14058	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	4	17	0.86	0.59	0.1001	0.1401	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.59	0.86	0.2402	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	PLEKHF1--NTF4	9	0	PLEKHF1	1450	chr19:30156412:+	NTF4	9896	chr19:49567119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0901	0	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,NTF4->chr19:49559050-49568333:-,neurotrophin_4	SNU668_STOMACH	1	1	0.0901	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	3	14	CTC-479C5.12	2449	chr16:67968472:-	LCAT	13705	chr16:67974734:-	ONLY_REF_SPLICE	YES	3	21	0.85	0.45	0.03	0.1401	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.45	0.85	0.1701	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	ERGIC3--COL3A1	5	0	ERGIC3	10770	chr20:34144006:+	COL3A1	32421	chr2:189866269:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	ERGIC3->ERGIC_and_golgi_3,Oncogene{Bushman},chr20:34129770-34145405:+,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	SNU668_STOMACH	1	1	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	2	11	CTC-479C5.12	2221	chr16:67968700:-	LCAT	13705	chr16:67974734:-	ONLY_REF_SPLICE	YES	78	21	0.14	0.38	0.02	0.1101	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.14	0.38	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	3	4	CTC-479C5.12	1598	chr16:67969323:-	LCAT	14058	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	181	17	0.04	0.29	0.03	0.04	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.04	0.29	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	ASPH--MTX2	3	0	ASPH	8053	chr8:62593527:-	MTX2	50884	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.03	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,MTX2->chr2:177134123-177202753:+,metaxin_2	SNU668_STOMACH	1	1	0.03	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	1	6	CTC-479C5.12	1722	chr16:67969199:-	LCAT	13705	chr16:67974734:-	ONLY_REF_SPLICE	YES	189	21	0.04	0.25	0.01	0.06	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.04	0.25	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	AC011551.3--TXNL4A	2	0	AC011551.3	3737	chr19:47079856:-	TXNL4A	19637	chr18:77733856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	AC011551.3->chr19:47050313-47104118:-,TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A	SNU668_STOMACH	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SNU668_STOMACH	1	1	0.02	TRUE	0	0	0	15	0	TRUE	ACH-000344
SNU668_STOMACH	GABBR2--FANCC	2	0	GABBR2	1781	chr9:101470699:-	FANCC	30886	chr9:98011651:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GABBR2->chr9:101050391-101471479:-,gamma-aminobutyric_acid_type_B_receptor_subunit_2,FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-	SNU668_STOMACH	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	1	2	CTC-479C5.12	1436	chr16:67969485:-	LCAT	14058	chr16:67974381:-	ONLY_REF_SPLICE	YES	77	17	0.04	0.15	0.01	0.02	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.04	0.15	0.03	TRUE	0	0	0	1	0	TRUE	ACH-000344
MIAPACA2_PANCREAS	RP11-488P3.1--GCLM	344	113	RP11-488P3.1	1248	chr1:94240753:-	GCLM	8418	chr1:94370144:-	ONLY_REF_SPLICE	YES	115	15	0.8	0.97	4.1007	1.347	RP11-488P3.1->chr1:94218480-94241000:-,GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit	MIAPACA2_PANCREAS	0.8	0.97	5.4477	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	CRIM1--IQCA1	202	112	CRIM1	7118	chr2:36668643:+	IQCA1	49252	chr2:237272622:-	ONLY_REF_SPLICE	YES	45	0	0.87	1	2.408	1.3351	{Klijn_CCL:Pancreas=1},CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),IQCA1->IQ_motif_containing_with_AAA_domain_1,chr2:237232794-237416185:-	MIAPACA2_PANCREAS	0.87	1	3.7431	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	MBD2--RP11-671P2.1	142	24	MBD2	1771	chr18:51750388:-	RP11-671P2.1	19087	chr18:51007443:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.6927	0.2861	MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2,RP11-671P2.1->chr18:51007205-51094653:-	MIAPACA2_PANCREAS	1	1	1.9788	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	NSRP1--RP11-640N20.6	57	26	NSRP1	3631	chr17:28445191:+	RP11-640N20.6	23227	chr17:30422081:+	ONLY_REF_SPLICE	YES	37	0	0.69	1	0.6795	0.3099	NSRP1->chr17:28442539-28513493:+,nuclear_speckle_splicing_regulatory_protein_1,RP11-640N20.6->chr17:30410198-30424084:+	MIAPACA2_PANCREAS	0.69	1	0.9894	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	RP11-488P3.1--GCLM	19	59	RP11-488P3.1	1248	chr1:94240753:-	GCLM	9741	chr1:94367225:-	ONLY_REF_SPLICE	YES	115	43	0.4	0.64	0.2265	0.7033	RP11-488P3.1->chr1:94218480-94241000:-,GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit	MIAPACA2_PANCREAS	0.4	0.64	0.9298	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	CRIM1--IQCA1	14	25	CRIM1	5875	chr2:36623930:+	IQCA1	49252	chr2:237272622:-	ONLY_REF_SPLICE	YES	75	0	0.34	1	0.1669	0.298	{Klijn_CCL:Pancreas=1},CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),IQCA1->IQ_motif_containing_with_AAA_domain_1,chr2:237232794-237416185:-	MIAPACA2_PANCREAS	0.34	1	0.4649	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	CLN8--CSMD3	13	10	CLN8	6398	chr8:1719763:+	CSMD3	31875	chr8:114031408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.155	0.1192	CLN8->ceroid-lipofuscinosis,_neuronal_8,chr8:1703944-1734738:+,CSMD3->CUB_and_Sushi_multiple_domains_3,Oncogene{Bushman},chr8:113235157-114449328:-	MIAPACA2_PANCREAS	1	1	0.2742	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	SLC20A1--POLR1B	10	18	SLC20A1	7996	chr2:113416523:+	POLR1B	32064	chr2:113330139:+	INCL_NON_REF_SPLICE	YES	332	30	0.08	0.48	0.1192	0.2146	{Klijn_CCL:Pancreas=1},LOCAL_REARRANGEMENT:+:[68799],SLC20A1->chr2:113403434-113421404:+,solute_carrier_family_20_member_1,POLR1B->chr2:113299492-113334635:+,polymerase_(RNA)_I_subunit_B	MIAPACA2_PANCREAS	0.08	0.48	0.3338	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	RP11-488P3.1--GCLM	4	41	RP11-488P3.1	1248	chr1:94240753:-	GCLM	10826	chr1:94363454:-	ONLY_REF_SPLICE	YES	115	161	0.28	0.22	0.0477	0.4888	RP11-488P3.1->chr1:94218480-94241000:-,GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit	MIAPACA2_PANCREAS	0.22	0.28	0.5365	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	MAT2B--HMMR	12	5	MAT2B	2513	chr5:162932755:+	HMMR	17263	chr5:162896647:+	ONLY_REF_SPLICE	YES	129	70	0.12	0.2	0.143	0.0596	{Klijn_CCL:Pancreas=1},LOCAL_REARRANGEMENT:+:[11173],MAT2B->chr5:162930120-162946342:+,methionine_adenosyltransferase_2B,HMMR->chr5:162887209-162918947:+,hyaluronan_mediated_motility_receptor	MIAPACA2_PANCREAS	0.12	0.2	0.2026	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	BDH1--AC024560.2	9	11	BDH1	9581	chr3:197259283:-	AC024560.2	25187	chr3:197388648:-	ONLY_REF_SPLICE	YES	137	0	0.13	1	0.1073	0.1311	LOCAL_REARRANGEMENT:-:[87242],BDH1->3-hydroxybutyrate_dehydrogenase,_type_1,chr3:197236654-197300194:-,AC024560.2->chr3:197387436-197392628:-	MIAPACA2_PANCREAS	0.13	1	0.2384	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	SLC20A1--POLR1B	9	9	SLC20A1	6412	chr2:113414818:+	POLR1B	32064	chr2:113330139:+	ONLY_REF_SPLICE	YES	170	30	0.1	0.38	0.1073	0.1073	{Klijn_CCL:Pancreas=1},LOCAL_REARRANGEMENT:+:[68799],SLC20A1->chr2:113403434-113421404:+,solute_carrier_family_20_member_1,POLR1B->chr2:113299492-113334635:+,polymerase_(RNA)_I_subunit_B	MIAPACA2_PANCREAS	0.1	0.38	0.2146	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	MAT2B--HMMR	9	1	MAT2B	1311	chr5:162930430:+	HMMR	17263	chr5:162896647:+	ONLY_REF_SPLICE	YES	22	70	0.31	0.12	0.1073	0.0119	{Klijn_CCL:Pancreas=1},LOCAL_REARRANGEMENT:+:[11173],MAT2B->chr5:162930120-162946342:+,methionine_adenosyltransferase_2B,HMMR->chr5:162887209-162918947:+,hyaluronan_mediated_motility_receptor	MIAPACA2_PANCREAS	0.12	0.31	0.1192	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	BCAR3--GCLM	7	3	BCAR3	2227	chr1:94311123:-	GCLM	30973	chr1:94370144:-	ONLY_REF_SPLICE	YES	0	15	1	0.4	0.0834	0.0358	LOCAL_REARRANGEMENT:-:[38055],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit	MIAPACA2_PANCREAS	0.4	1	0.1192	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	FAT1--SORBS2	6	6	FAT1	6844	chr4:187627717:-	SORBS2	51617	chr4:186696520:-	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.0715	0.0715	FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-,SORBS2->Oncogene{Bushman},chr4:186506598-186877806:-,sorbin_and_SH3_domain_containing_2	MIAPACA2_PANCREAS	0.75	1	0.143	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	SLC20A1--POLR1B	5	6	SLC20A1	4735	chr2:113410375:+	POLR1B	32064	chr2:113330139:+	ONLY_REF_SPLICE	YES	169	30	0.06	0.27	0.0596	0.0715	{Klijn_CCL:Pancreas=1},LOCAL_REARRANGEMENT:+:[68799],SLC20A1->chr2:113403434-113421404:+,solute_carrier_family_20_member_1,POLR1B->chr2:113299492-113334635:+,polymerase_(RNA)_I_subunit_B	MIAPACA2_PANCREAS	0.06	0.27	0.1311	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	EIF4A1P10--HSP90AA1	3	0	EIF4A1P10	1852	chrX:91368609:-	HSP90AA1	12841	chr14:102548565:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	EIF4A1P10->chrX:91368245-91369460:-,eukaryotic_translation_initiation_factor_4A1_pseudogene_10,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	MIAPACA2_PANCREAS	1	1	0.0358	TRUE	0	0	0	2	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	ZNF777--MFSD10	3	0	ZNF777	7948	chr7:149129678:-	MFSD10	13150	chr4:2935609:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	ZNF777->chr7:149128454-149158214:-,zinc_finger_protein_777,MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10	MIAPACA2_PANCREAS	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	CRIM1--IQCA1	1	6	CRIM1	1698	chr2:36583766:+	IQCA1	49252	chr2:237272622:-	ONLY_REF_SPLICE	NO	113	0	0.06	1	0.0119	0.0715	{Klijn_CCL:Pancreas=1},CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),IQCA1->IQ_motif_containing_with_AAA_domain_1,chr2:237232794-237416185:-	MIAPACA2_PANCREAS	0.06	1	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	AC002116.7--FAM193A	2	0	AC002116.7	3379	chr19:36510286:+	FAM193A	32591	chr4:2733502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	AC002116.7->chr19:36505410-36536874:+,FAM193A->chr4:2626988-2734292:+,family_with_sequence_similarity_193_member_A	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	FAM118A--KDM4B	2	0	FAM118A	6583	chr22:45719308:+	KDM4B	21994	chr19:5016268:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	FAM118A->chr22:45704849-45737836:+,family_with_sequence_similarity_118_member_A,KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	IGF2BP2--NDUFA9	2	0	IGF2BP2	2393	chr3:185540941:-	NDUFA9	34907	chr12:4777623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,NDUFA9->NADH:ubiquinone_oxidoreductase_subunit_A9,chr12:4758261-4798454:+	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	NSRP1--RP11-640N20.6	2	0	NSRP1	2321	chr17:28443881:+	RP11-640N20.6	23227	chr17:30422081:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	NSRP1->chr17:28442539-28513493:+,nuclear_speckle_splicing_regulatory_protein_1,RP11-640N20.6->chr17:30410198-30424084:+	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	NUP214--FBXW2	2	0	NUP214	11937	chr9:134016097:+	FBXW2	54524	chr9:123535118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,FBXW2->F-box_and_WD_repeat_domain_containing_2,chr9:123514256-123555690:-	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	PRKAG2--PUS7	2	0	PRKAG2	14032	chr7:151329155:-	PUS7	36485	chr7:105135700:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	PRKAR2B--WDR37	2	0	PRKAR2B	1566	chr7:106685659:+	WDR37	21418	chr10:1118056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	PRKAR2B->chr7:106685094-106802256:+,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_beta,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	RP11-379F4.4--IQCJ	2	0	RP11-379F4.4	8297	chr3:158459933:+	IQCJ	20857	chr3:158980337:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	RP11-379F4.4->chr3:158450052-158501859:+,IQCJ->IQ_motif_containing_J,chr3:158680717-158984096:+	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	SAMHD1--ZFYVE26	2	0	SAMHD1	15871	chr20:35526225:-	ZFYVE26	70089	chr14:68196536:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-,ZFYVE26->Oncogene{Bushman},chr14:68194091-68283307:-,zinc_finger_FYVE-type_containing_26	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	YAF2--PPHLN1	2	0	YAF2	1751	chr12:42631401:-	PPHLN1	43594	chr12:42835117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=2,Pancreas=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[98],YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,PPHLN1->chr12:42632249-42853517:+,periphilin_1	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	2	0	4	1	TRUE	ACH-000601
MIAPACA2_PANCREAS	FAT1--SORBS2	1	2	FAT1	6844	chr4:187627717:-	SORBS2	62941	chr4:186606000:-	ONLY_REF_SPLICE	YES	4	2	0.43	0.6	0.0119	0.0238	FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-,SORBS2->Oncogene{Bushman},chr4:186506598-186877806:-,sorbin_and_SH3_domain_containing_2	MIAPACA2_PANCREAS	0.43	0.6	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000601
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	316	13	IGH@	94754	chr14:106330024:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	2	96	0.99	0.77	3.9739	0.1635	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.99	4.1374	TRUE	0	0	0	6	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	244	7	IGH@	94353	chr14:106330425:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	2	96	0.99	0.72	3.0685	0.088	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.99	3.1565	TRUE	0	0	0	5	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITPK1--ISM2	126	65	ITPK1	12607	chr14:93418291:-	ISM2	24406	chr14:77951262:-	ONLY_REF_SPLICE	YES	250	1	0.43	0.99	1.5845	0.8174	{Klijn_CCL:Lymphoid=1},ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,ISM2->chr14:77940740-77965210:-,isthmin_2	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.99	2.4019	TRUE	0	0	0	2	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	96	22	IGH@	95370	chr14:106329408:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	2	96	0.98	0.55	1.2073	0.2767	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.98	1.484	TRUE	0	0	0	6	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	83	7	IGH@	93161	chr14:106331617:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	2	96	0.98	0.48	1.0438	0.088	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.98	1.1318	TRUE	0	0	0	5	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--MMRN1	9	4	CCSER1	6160	chr4:91234198:+	MMRN1	52159	chr4:90872756:+	ONLY_REF_SPLICE	YES	22	1	0.37	0.93	0.1132	0.0503	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.93	0.1635	TRUE	0	0	0	2	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	7	4	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	54237	chr4:90640977:+	ONLY_REF_SPLICE	YES	14	0	0.44	1	0.088	0.0503	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.1383	TRUE	0	2	0	2	2	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	6	0	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	55584	chr4:90647535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0755	0	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0755	TRUE	0	0	0	2	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	3	7	IGH@	93369	chr14:106331409:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	2	96	0.83	0.09	0.0377	0.088	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.83	0.1257	TRUE	0	0	0	5	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--MMRN1	4	1	CCSER1	1297	chr4:91048982:+	MMRN1	41500	chr4:90815875:+	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0503	0.0126	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.0629	TRUE	0	3	0	5	3	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	2	4	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	50594	chr4:90612436:+	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0252	0.0503	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.0755	TRUE	0	0	0	2	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRF--B4GALT2	3	0	PTPRF	27948	chr1:44079386:+	B4GALT2	42159	chr1:44450537:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	{Klijn_CCL:Lymphoid=1},PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F,B4GALT2->beta-1,4-galactosyltransferase_2,chr1:44444615-44456840:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0377	TRUE	0	0	0	2	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STK4--PABPC1L	3	0	STK4	14482	chr20:43629994:+	PABPC1L	42449	chr20:43586978:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:+:[7439],STK4->Oncogene{Bushman},chr20:43595115-43708600:+,serine/threonine_kinase_4,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	7	IGH@	93981	chr14:106330797:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	2	96	0.8	0.08	0.0126	0.088	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.8	0.1006	TRUE	0	0	0	5	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--MMRN1	1	4	CCSER1	7272	chr4:91246858:+	MMRN1	52159	chr4:90872756:+	ONLY_REF_SPLICE	NO	29	1	0.15	0.83	0.0126	0.0503	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.83	0.0629	TRUE	0	0	0	1	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	1	4	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	41644	chr4:90508972:+	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0126	0.0503	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.0629	TRUE	0	3	0	1	3	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--FAM195B	2	0	DANCR	1530	chr4:53579126:+	FAM195B	10467	chr17:79782430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,FAM195B->chr17:79780287-79791178:-	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FXR1--TNFSF13B	2	0	FXR1	3131	chr3:180630524:+	TNFSF13B	34417	chr13:108922448:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+,TNFSF13B->Oncogene{Bushman},chr13:108903588-108960832:+,tumor_necrosis_factor_superfamily_member_13b	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM63B--HSP90AA1	2	0	TMEM63B	1159	chr6:44094809:+	HSP90AA1	24630	chr14:102552715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	TMEM63B->chr6:44094651-44123256:+,transmembrane_protein_63B,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf66--C3P1	1	1	C19orf66	4574	chr19:10200371:+	C3P1	21754	chr19:10162978:+	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0126	0.0126	LOCAL_REARRANGEMENT:+:[11987],C19orf66->chr19:10196798-10203928:+,chromosome_19_open_reading_frame_66,C3P1->chr19:10148479-10184811:+,complement_component_3_precursor_pseudogene	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000024
BT12_SOFT_TISSUE	PCBP2--MTND2P28	57	0	PCBP2	11835	chr12:53856343:+	MTND2P28	25766	chr1:565066:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6457	0	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	BT12_SOFT_TISSUE	1	1	0.6457	TRUE	0	0	0	9	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	AKAP13--MYL10	9	18	AKAP13	1228	chr15:85924029:+	MYL10	65058	chr7:101272413:-	INCL_NON_REF_SPLICE	YES	32	0	0.46	1	0.102	0.2039	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,MYL10->chr7:101256605-101272576:-,myosin_light_chain_10	BT12_SOFT_TISSUE	0.46	1	0.3059	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	AKAP13--MYL10	2	12	AKAP13	1228	chr15:85924029:+	MYL10	66151	chr7:101267544:-	ONLY_REF_SPLICE	NO	32	0	0.3	1	0.0227	0.1359	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,MYL10->chr7:101256605-101272576:-,myosin_light_chain_10	BT12_SOFT_TISSUE	0.3	1	0.1586	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	AKAP13--MYL10	3	8	AKAP13	1228	chr15:85924029:+	MYL10	68215	chr7:101265480:-	ONLY_REF_SPLICE	YES	32	291	0.26	0.04	0.034	0.0906	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,MYL10->chr7:101256605-101272576:-,myosin_light_chain_10	BT12_SOFT_TISSUE	0.04	0.26	0.1246	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	RP11-112L6.4--CNOT1	3	0	RP11-112L6.4	1468	chr20:48789554:+	CNOT1	42641	chr16:58568299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	RP11-112L6.4->chr20:48789087-48793096:+,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	BT12_SOFT_TISSUE	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	DNAJC24--IMMP1L	2	0	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	0	4	0	9	1	TRUE	ACH-000160
BT12_SOFT_TISSUE	KCNE1--RCAN1	2	0	KCNE1	2175	chr21:35883399:-	RCAN1	21635	chr21:35896008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:-:[867],KCNE1->chr21:35818988-35884573:-,potassium_voltage-gated_channel_subfamily_E_regulatory_subunit_1,RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	KYNU--CCT4	2	0	KYNU	1239	chr2:143635305:+	CCT4	29015	chr2:62107529:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	KYNU->chr2:143635067-143799890:+,kynureninase,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	1	10	0	18	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	RP11-968O1.5--ANKLE2	2	0	RP11-968O1.5	2576	chr12:109551220:+	ANKLE2	13666	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RP11-968O1.5->chr12:109549023-109563399:+,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	TNK2--RPS5	2	0	TNK2	9274	chr3:195615297:-	RPS5	34386	chr19:58905864:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2,RPS5->chr19:58897767-58906173:+,ribosomal_protein_S5	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	WBSCR27--PPIA	2	0	WBSCR27	2466	chr7:73255400:-	PPIA	12875	chr7:44840886:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	WBSCR27->Williams_Beuren_syndrome_chromosome_region_27,chr7:73248920-73256865:-,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	MOSPD2--PRRG1	1	1	MOSPD2	1318	chrX:14891880:+	PRRG1	25163	chrX:37265462:+	ONLY_REF_SPLICE	YES	23	1	0.08	0.67	0.0113	0.0113	MOSPD2->chrX:14891563-14940449:+,motile_sperm_domain_containing_2,PRRG1->chrX:37208528-37316548:+,proline_rich_and_Gla_domain_1	BT12_SOFT_TISSUE	0.08	0.67	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000160
OELE_OVARY	PSMB8--MT2A	3	0	PSMB8	2684	chr6:32810797:-	MT2A	8371	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	PSMB8->chr6:32808494-32812480:-,proteasome_subunit_beta_8,MT2A->chr16:56642111-56643409:+,metallothionein_2A	OELE_OVARY	1	1	0.0352	TRUE	0	0	0	3	0	TRUE	ACH-000494
OELE_OVARY	AC091969.1--EPB41L5	2	0	AC091969.1	12214	chr5:152064221:-	EPB41L5	39186	chr2:120885264:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	AC091969.1->chr5:151998525-152603103:-,EPB41L5->chr2:120770581-120936695:+,erythrocyte_membrane_protein_band_4.1_like_5	OELE_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000494
OELE_OVARY	APBA2--B2M	2	0	APBA2	6931	chr15:29213952:+	B2M	35330	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	APBA2->amyloid_beta_precursor_protein_binding_family_A_member_2,chr15:29129629-29410518:+,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	OELE_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000494
OELE_OVARY	GFM2--ENOSF1	2	0	GFM2	10794	chr5:74041503:-	ENOSF1	29387	chr18:694334:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GFM2->G_elongation_factor,_mitochondrial_2,chr5:74017029-74063196:-,ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1	OELE_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000494
OELE_OVARY	PDCD6--BASP1	2	0	PDCD6	2152	chr5:272887:+	BASP1	25455	chr5:17275317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	OELE_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000494
OELE_OVARY	SPAG9--TEX10	2	0	SPAG9	2633	chr17:49156945:-	TEX10	58142	chr9:103082680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,TEX10->chr9:103064359-103115221:-,testis_expressed_10	OELE_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000494
OELE_OVARY	TTLL4--COL6A3	2	0	TTLL4	8068	chr2:219605307:+	COL6A3	62015	chr2:238249793:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	TTLL4->chr2:219575568-219620139:+,tubulin_tyrosine_ligase_like_4,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	OELE_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000494
NCIH2227_LUNG	SOX2-OT--GUSBP2	139	82	SOX2-OT	7662	chr3:180893371:+	GUSBP2	42006	chr6:26856976:-	ONLY_REF_SPLICE	YES	175	11	0.56	0.95	1.7256	1.018	SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	NCIH2227_LUNG	0.56	0.95	2.7436	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	POTEG--RP11-536C10.17	40	28	POTEG	6522	chr14:19563541:+	RP11-536C10.17	22528	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	31	0	0.69	1	0.4966	0.3476	POTEG->POTE_ankyrin_domain_family_member_G,chr14:19553365-19590078:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH2227_LUNG	0.69	1	0.8442	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	PPM1H--CACNA1C	13	9	PPM1H	5708	chr12:63195596:-	CACNA1C	27040	chr12:2558142:+	ONLY_REF_SPLICE	YES	60	3	0.27	0.88	0.1614	0.1117	PPM1H->chr12:63037762-63328817:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1H,CACNA1C->calcium_voltage-gated_channel_subunit_alpha1_C,chr12:2079952-2802108:+	NCIH2227_LUNG	0.27	0.88	0.2731	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	SBNO1--RILPL1	9	9	SBNO1	1143	chr12:123849248:-	RILPL1	44333	chr12:123983312:-	ONLY_REF_SPLICE	YES	51	26	0.26	0.41	0.1117	0.1117	SBNO1->Oncogene{Bushman},chr12:123773656-123849390:-,strawberry_notch_homolog_1_(Drosophila),RILPL1->Rab_interacting_lysosomal_protein-like_1,chr12:123955925-124018265:-	NCIH2227_LUNG	0.26	0.41	0.2234	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	SOX2-OT--GUSBP2	6	20	SOX2-OT	7662	chr3:180893371:+	GUSBP2	44240	chr6:26853222:-	ONLY_REF_SPLICE	YES	175	116	0.13	0.18	0.0745	0.2483	SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	NCIH2227_LUNG	0.13	0.18	0.3228	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	WDR62--CLC	6	7	WDR62	3519	chr19:36550932:+	CLC	36178	chr19:40225133:-	ONLY_REF_SPLICE	YES	98	28	0.12	0.32	0.0745	0.0869	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,CLC->Charcot-Leyden_crystal_galectin,chr19:40221890-40228668:-	NCIH2227_LUNG	0.12	0.32	0.1614	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	SOX2-OT--GUSBP2	3	8	SOX2-OT	7662	chr3:180893371:+	GUSBP2	45325	chr6:26851296:-	ONLY_REF_SPLICE	YES	175	42	0.06	0.21	0.0372	0.0993	SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	NCIH2227_LUNG	0.06	0.21	0.1365	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	CTD-2251F13.1--PRKD1	4	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0497	0.0124	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2227_LUNG	0.71	1	0.0621	TRUE	0	3	0	8	3	TRUE	ACH-000610
NCIH2227_LUNG	SGCE--PEG10	4	0	SGCE	1220	chr7:94285302:-	PEG10	20543	chr7:94292646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0497	0	LOCAL_INVERSION:-:+:[116],SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon,PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10	NCIH2227_LUNG	1	1	0.0497	TRUE	0	1	0	2	1	TRUE	ACH-000610
NCIH2227_LUNG	RP11-114H21.2--CTB-1I21.1	1	7	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0124	0.0869	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	NCIH2227_LUNG	0.8	1	0.0993	TRUE	0	2	0	12	2	TRUE	ACH-000610
NCIH2227_LUNG	AFF2--CNTNAP5	2	2	AFF2	1526	chrX:147582664:+	CNTNAP5	39852	chr2:124979282:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0248	0.0248	AFF2->AF4/FMR2_family_member_2,chrX:147582139-148082193:+,CNTNAP5->chr2:124782864-125672864:+,contactin_associated_protein-like_5	NCIH2227_LUNG	0.8	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	CTD-2251F13.1--PRKD1	2	1	CTD-2251F13.1	6082	chr14:30449355:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	1	12	0.75	0.2	0.0248	0.0124	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2227_LUNG	0.2	0.75	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	CTD-2251F13.1--PRKD1	2	1	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0.0124	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2227_LUNG	1	1	0.0372	TRUE	0	3	0	9	3	TRUE	ACH-000610
NCIH2227_LUNG	WDR62--CLC	1	5	WDR62	2360	chr19:36549773:+	CLC	36178	chr19:40225133:-	ONLY_REF_SPLICE	YES	82	28	0.07	0.18	0.0124	0.0621	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,CLC->Charcot-Leyden_crystal_galectin,chr19:40221890-40228668:-	NCIH2227_LUNG	0.07	0.18	0.0745	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	34380	chr14:30066964:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	MAPT--GJC1	2	0	MAPT	1305	chr17:43972052:+	GJC1	37725	chr17:42884837:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau,GJC1->chr17:42875816-42908184:-,gap_junction_protein_gamma_1	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	NIN--TNNT1	2	0	NIN	7017	chr14:51259430:-	TNNT1	48605	chr19:55658075:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NIN->Oncogene{Bushman},chr14:51186481-51297839:-,ninein,TNNT1->chr19:55644162-55660722:-,troponin_T1,_slow_skeletal_type	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	NKTR--CDKN2C	2	0	NKTR	15451	chr3:42674315:+	CDKN2C	35965	chr1:51439565:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NKTR->chr3:42642106-42690227:+,natural_killer_cell_triggering_receptor,CDKN2C->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:51426417-51440305:+,cyclin-dependent_kinase_inhibitor_2C	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	RBFOX2--RANGAP1	2	0	RBFOX2	1186	chr22:36424288:-	RANGAP1	35395	chr22:41677086:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	RBFOX2->RNA_binding_protein,_fox-1_homolog_2,chr22:36134783-36424473:-,RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	RP11-304L19.5--ABCA3	2	0	RP11-304L19.5	1216	chr16:2205144:-	ABCA3	22983	chr16:2339621:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	RP11-304L19.5->chr16:2204798-2205359:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	WDR33--LEMD2	2	0	WDR33	7687	chr2:128520636:-	LEMD2	35818	chr6:33754551:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,LEMD2->LEM_domain_containing_2,chr6:33738979-33756913:-	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	ZNF519--GABRA3	2	0	ZNF519	2343	chr18:14124349:-	GABRA3	24901	chrX:151533068:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,GABRA3->chrX:151334706-151619830:-,gamma-aminobutyric_acid_type_A_receptor_alpha3_subunit	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
HEC1B_ENDOMETRIUM	SDHB--PREX2	100	0	SDHB	1223	chr1:17380443:-	PREX2	54929	chr8:69103957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.9956	0	SDHB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:17345217-17380665:-,succinate_dehydrogenase_complex_iron_sulfur_subunit_B,PREX2->ArcherDX_panel,FoundationOne_panel,chr8:68864353-69149265:+,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_2	HEC1B_ENDOMETRIUM	1	1	0.9956	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	TICAM1--PLIN3	56	14	TICAM1	1091	chr19:4831626:-	PLIN3	7727	chr19:4867730:-	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.5576	0.1394	LOCAL_REARRANGEMENT:-:[6637],TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1,PLIN3->chr19:4838353-4867780:-,perilipin_3	HEC1B_ENDOMETRIUM	0.93	1	0.697	TRUE	0	0	0	2	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	PREX2--SDHB	41	13	PREX2	1418	chr8:68864770:+	SDHB	58353	chr1:17371383:-	ONLY_REF_SPLICE	YES	2	22	0.96	0.71	0.4082	0.1294	PREX2->ArcherDX_panel,FoundationOne_panel,chr8:68864353-69149265:+,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_2,SDHB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:17345217-17380665:-,succinate_dehydrogenase_complex_iron_sulfur_subunit_B	HEC1B_ENDOMETRIUM	0.71	0.96	0.5376	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	DENND1A--STRBP	36	15	DENND1A	2335	chr9:126641230:-	STRBP	47800	chr9:125946577:-	ONLY_REF_SPLICE	YES	25	29	0.67	0.64	0.3584	0.1493	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,STRBP->chr9:125871779-126030855:-,spermatid_perinuclear_RNA_binding_protein	HEC1B_ENDOMETRIUM	0.64	0.67	0.5077	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	REV1--AFF3	23	9	REV1	3576	chr2:100078958:-	AFF3	59528	chr2:100185377:-	ONLY_REF_SPLICE	YES	32	1	0.5	0.97	0.229	0.0896	LOCAL_REARRANGEMENT:-:[55826],REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	HEC1B_ENDOMETRIUM	0.5	0.97	0.3186	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	MAP3K1--NDUFAF2	20	6	MAP3K1	18803	chr5:56184184:+	NDUFAF2	27891	chr5:60368952:+	ONLY_REF_SPLICE	YES	18	125	0.59	0.17	0.1991	0.0597	{Klijn_CCL:Uterus=1},MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	HEC1B_ENDOMETRIUM	0.17	0.59	0.2588	TRUE	0	0	0	2	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	TICAM1--PLIN3	18	8	TICAM1	1091	chr19:4831626:-	PLIN3	9813	chr19:4861423:-	ONLY_REF_SPLICE	YES	5	7	0.84	0.79	0.1792	0.0797	LOCAL_REARRANGEMENT:-:[6637],TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1,PLIN3->chr19:4838353-4867780:-,perilipin_3	HEC1B_ENDOMETRIUM	0.79	0.84	0.2589	TRUE	0	0	0	2	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	FARP2--GAL3ST2	7	2	FARP2	13097	chr2:242357524:+	GAL3ST2	46907	chr2:242738480:+	ONLY_REF_SPLICE	YES	9	0	0.5	1	0.0697	0.0199	FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,GAL3ST2->chr2:242716240-242743623:+,galactose-3-O-sulfotransferase_2	HEC1B_ENDOMETRIUM	0.5	1	0.0896	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	AL589743.1--RP11-536C10.17	3	4	AL589743.1	9393	chr14:19680685:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	173	0	0.04	1	0.0299	0.0398	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	HEC1B_ENDOMETRIUM	0.04	1	0.0697	TRUE	0	8	0	6	8	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	3	4	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	60	0	0.1	1	0.0299	0.0398	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HEC1B_ENDOMETRIUM	0.1	1	0.0697	TRUE	0	8	0	10	8	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	MAP3K1--NDUFAF2	3	0	MAP3K1	18803	chr5:56184184:+	NDUFAF2	30068	chr5:60394819:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	{Klijn_CCL:Uterus=1},MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	HEC1B_ENDOMETRIUM	1	1	0.0299	TRUE	0	0	0	2	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	TRAK2--ALS2CR11	3	0	TRAK2	1230	chr2:202316073:-	ALS2CR11	42812	chr2:202360692:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	LOCAL_REARRANGEMENT:-:[35846],TRAK2->chr2:202241930-202316302:-,trafficking_protein,_kinesin_binding_2,ALS2CR11->amyotrophic_lateral_sclerosis_2_chromosome_region_candidate_11,chr2:202352148-202483901:-	HEC1B_ENDOMETRIUM	1	1	0.0299	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	SRSF12--PNRC1	2	0	SRSF12	1259	chr6:89827542:-	PNRC1	14374	chr6:89793472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[10799],SRSF12->chr6:89805678-89827800:-,serine/arginine-rich_splicing_factor_12,PNRC1->chr6:89790470-89794879:+,proline_rich_nuclear_receptor_coactivator_1	HEC1B_ENDOMETRIUM	1	1	0.0199	TRUE	1	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	TEX9--RPS27A	2	0	TEX9	11289	chr15:56687032:+	RPS27A	23272	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	TEX9->chr15:56536207-56738195:+,testis_expressed_9,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	HEC1B_ENDOMETRIUM	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	RP11-368L12.1--RP11-96H17.1	1	1	RP11-368L12.1	3549	chr16:63565129:-	RP11-96H17.1	10295	chr16:63153269:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.01	0.01	GTEx_FI:{Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4]},RP11-368L12.1->chr16:63348168-63651950:-,RP11-96H17.1->chr16:63090690-63163558:-	HEC1B_ENDOMETRIUM	1	1	0.02	TRUE	0	1	0	1	1	TRUE	ACH-000941
SKRC20_KIDNEY	AFAP1--NAA15	60	48	AFAP1	8559	chr4:7840251:-	NAA15	35043	chr4:140255328:+	ONLY_REF_SPLICE	YES	30	109	0.78	0.5	0.6126	0.49	AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+	SKRC20_KIDNEY	0.5	0.78	1.1026	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	VAMP5--VAMP8	33	0	VAMP5	1086	chr2:85811616:+	VAMP8	10928	chr2:85808699:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3369	0	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[2377],VAMP5->chr2:85811531-85820535:+,vesicle_associated_membrane_protein_5,VAMP8->Oncogene{Bushman},chr2:85788685-85809154:+,vesicle_associated_membrane_protein_8	SKRC20_KIDNEY	1	1	0.3369	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	PEAK1--HMG20A	24	0	PEAK1	1139	chr15:77712348:-	HMG20A	34602	chr15:77750746:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.245	0	LOCAL_INVERSION:-:+:[268],PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1,HMG20A->chr15:77712754-77777949:+,high_mobility_group_20A	SKRC20_KIDNEY	1	1	0.245	TRUE	0	1	0	1	1	TRUE	ACH-000385
SKRC20_KIDNEY	AFAP1--NAA15	1	17	AFAP1	7379	chr4:7844866:-	NAA15	35043	chr4:140255328:+	ONLY_REF_SPLICE	YES	66	109	0.21	0.14	0.0102	0.1736	AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+	SKRC20_KIDNEY	0.14	0.21	0.1838	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	HMG20A--PEAK1	4	3	HMG20A	1593	chr15:77713346:+	PEAK1	20568	chr15:77657567:-	ONLY_REF_SPLICE	YES	16	1	0.3	0.88	0.0408	0.0306	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[268],HMG20A->chr15:77712754-77777949:+,high_mobility_group_20A,PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1	SKRC20_KIDNEY	0.3	0.88	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	ITPR1--PRICKLE2-AS3	3	1	ITPR1	49642	chr3:4777038:+	PRICKLE2-AS3	77140	chr3:64175970:+	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0306	0.0102	ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1,PRICKLE2-AS3->PRICKLE2_antisense_RNA_3,chr3:64173220-64186641:+	SKRC20_KIDNEY	0.2	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	CTSD--ACTG1	3	0	CTSD	4382	chr11:1780784:-	ACTG1	17252	chr17:79477746:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.03%,CTSD->cathepsin_D,chr11:1773982-1785222:-,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SKRC20_KIDNEY	1	1	0.0306	TRUE	0	0	0	2	0	TRUE	ACH-000385
SKRC20_KIDNEY	KMT2C--WDR86-AS1	3	0	KMT2C	1380	chr7:152132711:-	WDR86-AS1	78222	chr7:151109805:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,WDR86-AS1->WDR86_antisense_RNA_1,chr7:151106247-151110440:+	SKRC20_KIDNEY	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	ITPR1--PRICKLE2-AS3	2	1	ITPR1	49642	chr3:4777038:+	PRICKLE2-AS3	79317	chr3:64184385:+	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0204	0.0102	ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1,PRICKLE2-AS3->PRICKLE2_antisense_RNA_3,chr3:64173220-64186641:+	SKRC20_KIDNEY	0.16	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	RP11-244H3.1--ZMYM1	2	1	RP11-244H3.1	1116	chr1:35450799:-	ZMYM1	20139	chr1:35578578:+	ONLY_REF_SPLICE	YES	0	16	1	0.16	0.0204	0.0102	LOCAL_INVERSION:-:+:[74473],RP11-244H3.1->chr1:35439957-35450914:-,ZMYM1->chr1:35525387-35581460:+,zinc_finger_MYM-type_containing_1	SKRC20_KIDNEY	0.16	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	ICAM1--CDC37	2	0	ICAM1	1392	chr19:10381902:+	CDC37	19207	chr19:10502382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ICAM1->Oncogene{Bushman},chr19:10381511-10397291:+,intercellular_adhesion_molecule_1,CDC37->cell_division_cycle_37,chr19:10501810-10530797:-	SKRC20_KIDNEY	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	MIR210HG--C9orf3	2	0	MIR210HG	1106	chr11:568352:-	C9orf3	43591	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MIR210HG->MIR210_host_gene,chr11:565660-568457:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SKRC20_KIDNEY	1	1	0.0204	TRUE	1	5	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	IFFO2--RP11-91K11.2	1	1	IFFO2	2019	chr1:19282162:-	RP11-91K11.2	18773	chr1:20145736:+	ONLY_REF_SPLICE	NO	27	1	0.07	0.67	0.0102	0.0102	IFFO2->chr1:19230775-19283180:-,intermediate_filament_family_orphan_2,RP11-91K11.2->chr1:20140860-20145995:+	SKRC20_KIDNEY	0.07	0.67	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000385
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP24--PVT1	111	39	ARHGAP24	2646	chr4:86491874:+	PVT1	36607	chr8:128944711:+	ONLY_REF_SPLICE	YES	72	0	0.68	1	1.0072	0.3539	ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	1.3611	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFKBIZ--SSC5D	61	12	NFKBIZ	11180	chr3:101576303:+	SSC5D	26802	chr19:56012401:+	ONLY_REF_SPLICE	YES	308	2	0.19	0.97	0.5535	0.1089	NFKBIZ->NFKB_inhibitor_zeta,chr3:101546835-101579866:+,SSC5D->chr19:55999771-56030465:+,scavenger_receptor_cysteine_rich_family_member_with_5_domains	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.97	0.6624	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ARHGAP24	53	33	PVT1	8346	chr8:128903244:+	ARHGAP24	33525	chr4:86643038:+	ONLY_REF_SPLICE	YES	0	205	1	0.3	0.4809	0.2994	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.7803	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DAG1--PTPRG	12	12	DAG1	2645	chr3:49507866:+	PTPRG	28709	chr3:62063837:+	ONLY_REF_SPLICE	YES	6	1	0.8	0.96	0.1089	0.1089	DAG1->chr3:49506146-49573048:+,dystroglycan_1,PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.96	0.2178	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP24--PVT1	8	4	ARHGAP24	2646	chr4:86491874:+	PVT1	37838	chr8:128951754:+	ONLY_REF_SPLICE	YES	72	0	0.14	1	0.0726	0.0363	ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LA16c-321D4.2--ZSCAN10	6	0	LA16c-321D4.2	1085	chr16:3004193:-	ZSCAN10	9025	chr16:3143005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0544	0	LA16c-321D4.2->chr16:2989715-3004277:-,ZSCAN10->chr16:3138891-3149318:-,zinc_finger_and_SCAN_domain_containing_10	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DAG1--PTPRG	2	12	DAG1	6626	chr3:49526178:+	PTPRG	28709	chr3:62063837:+	ONLY_REF_SPLICE	YES	8	1	0.64	0.93	0.0181	0.1089	DAG1->chr3:49506146-49573048:+,dystroglycan_1,PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.93	0.127	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DAG1--PTPRG	1	12	DAG1	4318	chr3:49514338:+	PTPRG	28709	chr3:62063837:+	ONLY_REF_SPLICE	YES	8	1	0.62	0.93	0.0091	0.1089	DAG1->chr3:49506146-49573048:+,dystroglycan_1,PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.93	0.118	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED25--ALDH16A1	4	0	MED25	1335	chr19:50321873:+	ALDH16A1	20824	chr19:49964876:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	MED25->chr19:50321539-50342073:+,mediator_complex_subunit_25,ALDH16A1->aldehyde_dehydrogenase_16_family_member_A1,chr19:49956426-49974305:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF804A--SET	4	0	ZNF804A	1705	chr2:185463797:+	SET	16350	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	ZNF804A->chr2:185463093-185804219:+,zinc_finger_protein_804A,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP24--PVT1	3	1	ARHGAP24	2646	chr4:86491874:+	PVT1	41086	chr8:129001408:+	ONLY_REF_SPLICE	YES	72	0	0.05	1	0.0272	0.0091	ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--PRPF8	2	0	AC096579.7	1523	chr2:89165131:-	PRPF8	21367	chr17:1565447:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	AC096579.7->chr2:89130700-89165653:-,PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT4--MTPN	2	0	CNOT4	1239	chr7:135194637:-	MTPN	25020	chr7:135636378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx&tcga_normals:1/3694=0.03%,CNOT4->CCR4-NOT_transcription_complex_subunit_4,chr7:135046547-135194875:-,MTPN->chr7:135611509-135662101:-,myotrophin	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--PHF14	2	0	CPSF6	11046	chr12:69656342:+	PHF14	44409	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--ZNF776	2	0	CPSF6	11046	chr12:69656342:+	ZNF776	27090	chr19:58268240:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,ZNF776->chr19:58258164-58269527:+,zinc_finger_protein_776	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	1	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNM2--AP2A1	2	0	DNM2	32392	chr19:10935897:+	AP2A1	51297	chr19:50304218:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	DNM2->chr19:10828755-10944164:+,dynamin_2,AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LARP7--PPME1	2	0	LARP7	1276	chr4:113558395:+	PPME1	22128	chr11:73936250:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LARP7->La_ribonucleoprotein_domain_family_member_7,chr4:113558120-113578748:+,PPME1->chr11:73882144-73965748:+,protein_phosphatase_methylesterase_1	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUPL2--RBBP6	2	0	NUPL2	3987	chr7:23226765:+	RBBP6	16828	chr16:24551933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,RBBP6->Oncogene{Bushman},chr16:24549014-24584184:+,retinoblastoma_binding_protein_6	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PXMP2--ANKLE2	2	0	PXMP2	2662	chr12:133266962:+	ANKLE2	21143	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_INVERSION:+:-:[4978],PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	1	0	4	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRF--P2RX5	2	0	SRF	3420	chr6:43141851:+	P2RX5	24502	chr17:3577171:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	SRF->chr6:43139037-43149243:+,serum_response_factor,P2RX5->chr17:3575493-3599698:-,purinergic_receptor_P2X_5	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TET1--GNAS	2	0	TET1	5177	chr10:70360791:+	GNAS	39689	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	TET1->Oncogene{Bushman},chr10:70320413-70454239:+,tet_methylcytosine_dioxygenase_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
CH157MN_CENTRAL_NERVOUS_SYSTEM	SLC38A2--PTMA	112	1	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	1635	7	0.06	0.94	0.6896	0.0062	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.06	0.94	0.6958	TRUE	0	0	0	10	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	KRR1--CNTLN	101	0	KRR1	8833	chr12:75893487:-	CNTLN	18802	chr9:17168448:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6219	0	KRR1->KRR1,_small_subunit_processome_component_homolog,chr12:75890684-75905416:-,CNTLN->centlein,chr9:17134980-17503921:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.6219	TRUE	0	4	0	1	4	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	DUSP5P1--PCNXL2	85	15	DUSP5P1	1123	chr1:228745007:+	PCNXL2	43873	chr1:233161145:-	ONLY_REF_SPLICE	YES	0	16	1	0.86	0.5234	0.0924	DUSP5P1->chr1:228744885-228788150:+,dual_specificity_phosphatase_5_pseudogene_1,PCNXL2->chr1:233119181-233431459:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.6158	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	FASN--CCDC57	28	15	FASN	2346	chr17:80054195:-	CCDC57	60141	chr17:80059742:-	ONLY_REF_SPLICE	YES	760	72	0.05	0.37	0.1724	0.0924	LOCAL_REARRANGEMENT:-:[3128],FASN->chr17:80036214-80056208:-,fatty_acid_synthase,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.05	0.37	0.2648	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	TP53--SHBG	21	15	TP53	7497	chr17:7573927:-	SHBG	17612	chr17:7533734:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.1293	0.0924	LOCAL_INVERSION:-:+:[28397],TP53->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr17:7565097-7590856:-,tumor_protein_p53,SHBG->Oncogene{Bushman},chr17:7517382-7536700:+,sex_hormone_binding_globulin	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.97	1	0.2217	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	SDHAP1--GPR160	9	15	SDHAP1	3107	chr3:195712498:-	GPR160	28724	chr3:169797562:+	ONLY_REF_SPLICE	YES	223	22	0.1	0.52	0.0554	0.0924	SDHAP1->chr3:195686619-195717189:-,succinate_dehydrogenase_complex_flavoprotein_subunit_A_pseudogene_1,GPR160->G_protein-coupled_receptor_160,chr3:169755717-169803191:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.1	0.52	0.1478	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	DUSP5P1--PCNXL2	11	5	DUSP5P1	1123	chr1:228745007:+	PCNXL2	45127	chr1:233152900:-	ONLY_REF_SPLICE	YES	0	53	1	0.23	0.0677	0.0308	DUSP5P1->chr1:228744885-228788150:+,dual_specificity_phosphatase_5_pseudogene_1,PCNXL2->chr1:233119181-233431459:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.0985	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MTAP--DMRTA1	6	11	MTAP	12211	chr9:21859424:+	DMRTA1	25056	chr9:22451063:+	ONLY_REF_SPLICE	YES	2	5	0.89	0.77	0.0369	0.0677	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.77	0.89	0.1046	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	C11orf68--DRAP1	6	0	C11orf68	1088	chr11:65686501:-	DRAP1	6515	chr11:65686932:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0369	TRUE	0	1	0	6	1	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	SDHAP1--GPR160	2	16	SDHAP1	3107	chr3:195712498:-	GPR160	26873	chr3:169794911:+	ONLY_REF_SPLICE	YES	223	23	0.07	0.44	0.0123	0.0985	SDHAP1->chr3:195686619-195717189:-,succinate_dehydrogenase_complex_flavoprotein_subunit_A_pseudogene_1,GPR160->G_protein-coupled_receptor_160,chr3:169755717-169803191:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.07	0.44	0.1108	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PSD3--CSGALNACT1	3	1	PSD3	11776	chr8:18725184:-	CSGALNACT1	52240	chr8:19459376:-	ONLY_REF_SPLICE	YES	22	6	0.15	0.4	0.0185	0.0062	{Klijn_CCL:Breast=1},PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.15	0.4	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	GOLT1B--RECQL	3	0	GOLT1B	1168	chr12:21654882:+	RECQL	24479	chr12:21624581:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},LOCAL_INVERSION:+:-:[112],GOLT1B->chr12:21654715-21671342:+,golgi_transport_1B,RECQL->Oncogene{Bushman},RecQ_like_helicase,chr12:21621845-21654603:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	LYRM4--FARS2	3	0	LYRM4	1292	chr6:5260881:-	FARS2	27758	chr6:5404775:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx_v2:{count=2;pct=0.02%;dist=Ovary=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[105],LYRM4->LYR_motif_containing_4,chr6:5102827-5261172:-,FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PDHX--CD44	3	0	PDHX	3068	chr11:34953031:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0185	TRUE	0	0	0	4	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PRMT3--CTD-3012A18.1	3	0	PRMT3	18100	chr11:20515800:+	CTD-3012A18.1	24375	chr11:29573907:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3,CTD-3012A18.1->chr11:29540623-29574186:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MTAP--DMRTA1	1	6	MTAP	9899	chr9:21854869:+	DMRTA1	25056	chr9:22451063:+	ONLY_REF_SPLICE	YES	44	5	0.14	0.58	0.0062	0.0369	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.14	0.58	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	FADS2--TMEM258	2	1	FADS2	1049	chr11:61560500:+	TMEM258	29821	chr11:61558074:-	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0123	0.0062	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[178],FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,TMEM258->chr11:61535973-61560274:-,transmembrane_protein_258	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.0185	TRUE	0	2	0	5	2	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	FASN--CCDC57	1	5	FASN	1212	chr17:80055997:-	CCDC57	60141	chr17:80059742:-	ONLY_REF_SPLICE	NO	126	72	0.05	0.08	0.0062	0.0308	LOCAL_REARRANGEMENT:-:[3128],FASN->chr17:80036214-80056208:-,fatty_acid_synthase,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.05	0.08	0.037	TRUE	1	2	0	1	2	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	AMOTL2--MT2A	2	0	AMOTL2	2138	chr3:134093184:-	MT2A	18794	chr16:56642904:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	AMOTL2->angiomotin_like_2,chr3:134074716-134094321:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	ATIC--STT3A	2	0	ATIC	15178	chr2:216211664:+	STT3A	36366	chr11:125482487:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	ATIC->5-aminoimidazole-4-carboxamide_ribonucleotide_formyltransferase/IMP_cyclohydrolase,Oncogene{Bushman},chr2:216176540-216214487:+,STT3A->STT3A,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr11:125461607-125495110:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	C20orf197--AD000671.6	2	0	C20orf197	1084	chr20:58631063:+	AD000671.6	10297	chr19:36235322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	C20orf197->chr20:58630980-58648008:+,chromosome_20_open_reading_frame_197,AD000671.6->chr19:36230153-36236333:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CDH13--CCDC50	2	0	CDH13	1335	chr16:82660742:+	CCDC50	39984	chr3:191078858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CLIC4--PHF14	2	0	CLIC4	3416	chr1:25124342:+	PHF14	38742	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CPSF6--GCN1L1	2	0	CPSF6	11046	chr12:69656342:+	GCN1L1	62827	chr12:120565778:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,GCN1L1->chr12:120565007-120632513:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CYHR1--GDI2	2	0	CYHR1	10965	chr8:145677742:-	GDI2	30138	chr10:5808258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	EXOSC7--ZNF35	2	0	EXOSC7	2094	chr3:45017826:+	ZNF35	21513	chr3:44700193:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	EXOSC7->chr3:45016733-45077558:+,exosome_component_7,ZNF35->Oncogene{Bushman},chr3:44690219-44702283:+,zinc_finger_protein_35	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	HNRNPR--ACTR3	2	0	HNRNPR	7577	chr1:23648021:-	ACTR3	37216	chr2:114713200:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,ACTR3->ARP3_actin-related_protein_3_homolog_(yeast),chr2:114647537-114720173:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MIR29B1--TUBGCP5	2	0	MIR29B1	2201	chr7:130596869:-	TUBGCP5	27457	chr15:22861737:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	MIR29B1->chr7:130561495-130598069:-,microRNA_29b-1,TUBGCP5->chr15:22833395-22873892:+,tubulin_gamma_complex_associated_protein_5	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PANK4--GNB1	2	0	PANK4	1137	chr1:2457903:-	GNB1	20321	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	PANK4->chr1:2439972-2458039:-,pantothenate_kinase_4,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PDS5B--SPG20	2	0	PDS5B	1167	chr13:33160730:+	SPG20	52075	chr13:36909969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,SPG20->chr13:36875775-36944317:-,spastic_paraplegia_20_(Troyer_syndrome)	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PLEC--FOXJ3	2	0	PLEC	25245	chr8:145001145:-	FOXJ3	42023	chr1:42789498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	PLEC->chr8:144989321-145050902:-,plectin,FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RGS3--RPL19	2	0	RGS3	40099	chr9:116358045:+	RPL19	47105	chr17:37358570:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3,RPL19->chr17:37356536-37360980:+,ribosomal_protein_L19	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RORA--ZXDC	2	0	RORA	13827	chr15:60884586:-	ZXDC	54771	chr3:126158570:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ZXDC->ZXD_family_zinc_finger_C,chr3:126156444-126194762:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-820L6.1--C9orf3	2	0	RP11-820L6.1	11286	chr11:122026259:-	C9orf3	51208	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	RP11-820L6.1->chr11:122026130-122293579:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	1	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP4-769N13.6--TOP1	2	0	RP4-769N13.6	4703	chrX:101860581:+	TOP1	27893	chr20:39741422:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	RP4-769N13.6->chrX:101854440-101969599:+,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	SERP1--NIPA2	2	0	SERP1	1285	chr3:150320731:-	NIPA2	17069	chr15:23027922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	SERP1->chr3:150259781-150321015:-,stress-associated_endoplasmic_reticulum_protein_1,NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
SKMEL3_SKIN	FTO--RSPRY1	224	3	FTO	1267	chr16:53738141:+	RSPRY1	48234	chr16:57269036:+	ONLY_REF_SPLICE	YES	2	13	0.99	0.95	2.2797	0.0305	FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated,RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1	SKMEL3_SKIN	0.95	0.99	2.3102	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	TUBGCP5--MKRN3	42	22	TUBGCP5	13966	chr15:22855295:+	MKRN3	31271	chr15:23820493:+	ONLY_REF_SPLICE	YES	77	0	0.45	1	0.4275	0.2239	TUBGCP5->chr15:22833395-22873892:+,tubulin_gamma_complex_associated_protein_5,MKRN3->Oncogene{Bushman},chr15:23810454-23873064:+,makorin_ring_finger_protein_3	SKMEL3_SKIN	0.45	1	0.6514	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	BNIP2--GCOM1	10	6	BNIP2	13044	chr15:59956272:-	GCOM1	32218	chr15:57938335:+	INCL_NON_REF_SPLICE	YES	183	4	0.08	0.8	0.1018	0.0611	BNIP2->BCL2/adenovirus_E1B_19kDa_interacting_protein_2,chr15:59951345-59981733:-,GCOM1->GRINL1A_complex_locus_1,chr15:57884106-58006943:+	SKMEL3_SKIN	0.08	0.8	0.1629	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	ATP10A--KIAA0125P2	4	1	ATP10A	3232	chr15:26107795:-	KIAA0125P2	33065	chr15:21225741:+	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0407	0.0102	ATP10A->ATPase_phospholipid_transporting_10A_(putative),chr15:25922420-26110317:-,KIAA0125P2->KIAA0125_pseudogene_2,chr15:21224717-21226180:+	SKMEL3_SKIN	0.25	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	NAA38--SSU72	4	0	NAA38	1223	chr7:117824308:+	SSU72	17660	chr1:1480382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	NAA38->N(alpha)-acetyltransferase_38,_NatC_auxiliary_subunit,chr7:117824086-117832878:+,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SKMEL3_SKIN	1	1	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	TTYH3--MAD1L1	2	6	TTYH3	1328	chr7:2671912:+	MAD1L1	45286	chr7:2108973:-	ONLY_REF_SPLICE	YES	174	31	0.04	0.21	0.0204	0.0611	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.04	0.21	0.0815	TRUE	0	1	0	1	1	TRUE	ACH-000423
SKMEL3_SKIN	ACSF3--SLC7A5	3	0	ACSF3	2292	chr16:89160404:+	SLC7A5	34149	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	SKMEL3_SKIN	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	CNIH4--SSU72	3	0	CNIH4	1144	chr1:224544695:+	SSU72	20548	chr1:1480382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	CNIH4->chr1:224544552-224567161:+,cornichon_family_AMPA_receptor_auxiliary_protein_4,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SKMEL3_SKIN	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	PMEL--GPNMB	3	0	PMEL	7895	chr12:56351790:-	GPNMB	24477	chr7:23299678:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	PROTCLUST,PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,GPNMB->Oncogene{Bushman},chr7:23275586-23314727:+,glycoprotein_nmb	SKMEL3_SKIN	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	TTYH3--MAD1L1	2	4	TTYH3	1328	chr7:2671912:+	MAD1L1	46431	chr7:2054277:-	ONLY_REF_SPLICE	YES	174	33	0.03	0.15	0.0204	0.0407	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.03	0.15	0.0611	TRUE	0	4	0	2	2	TRUE	ACH-000423
SKMEL3_SKIN	ZC3H3--PLEC	3	0	ZC3H3	4593	chr8:144618427:-	PLEC	30122	chr8:145012860:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,PLEC->chr8:144989321-145050902:-,plectin	SKMEL3_SKIN	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	C7orf50--MAD1L1	1	7	C7orf50	6340	chr7:1067894:-	MAD1L1	42333	chr7:2108973:-	ONLY_REF_SPLICE	YES	159	31	0.05	0.21	0.0102	0.0712	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.05	0.21	0.0814	TRUE	0	0	0	3	0	TRUE	ACH-000423
SKMEL3_SKIN	C7orf50--MAD1L1	1	6	C7orf50	3078	chr7:1166893:-	MAD1L1	44619	chr7:2041756:-	ONLY_REF_SPLICE	YES	140	39	0.05	0.15	0.0102	0.0611	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.05	0.15	0.0713	TRUE	0	0	0	2	0	TRUE	ACH-000423
SKMEL3_SKIN	C7orf50--MAD1L1	1	5	C7orf50	3078	chr7:1166893:-	MAD1L1	55558	chr7:1855864:-	ONLY_REF_SPLICE	YES	140	262	0.04	0.02	0.0102	0.0509	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.02	0.04	0.0611	TRUE	0	4	0	5	2	TRUE	ACH-000423
SKMEL3_SKIN	AC096559.1--TBCA	2	0	AC096559.1	12507	chr2:12454531:+	TBCA	25193	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	AC096559.1->chr2:11988748-12718474:+,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	CCAT1--CASC8	2	0	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SKMEL3_SKIN	1	1	0.0204	TRUE	0	7	0	7	7	TRUE	ACH-000423
SKMEL3_SKIN	CSNK1G2--BTBD2	2	0	CSNK1G2	1230	chr19:1941417:+	BTBD2	22552	chr19:1997462:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_INVERSION:+:-:[4110],CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,BTBD2->BTB_domain_containing_2,chr19:1985447-2034880:-	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	3	0	TRUE	ACH-000423
SKMEL3_SKIN	FAM222A-AS1--GIT2	2	0	FAM222A-AS1	1212	chr12:110211102:-	GIT2	32780	chr12:110376373:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	FAM222A-AS1->FAM222A_antisense_RNA_1,chr12:110171971-110211313:-,GIT2->GIT_ArfGAP_2,chr12:110367607-110434194:-	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	MAD1L1--C7orf50	2	0	MAD1L1	19401	chr7:2188787:-	C7orf50	52899	chr7:1049779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	MBNL1--ATP1B3	2	0	MBNL1	3666	chr3:151986881:+	ATP1B3	31553	chr3:141622462:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,ATP1B3->ATPase_Na+/K+_transporting_subunit_beta_3,chr3:141594966-141645356:+	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	PAPOLA--WARS	2	0	PAPOLA	2168	chr14:96968937:+	WARS	43863	chr14:100820903:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,WARS->chr14:100800125-100843142:-,tryptophanyl-tRNA_synthetase	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	RPL22--KHDRBS1	2	0	RPL22	7028	chr1:6257712:-	KHDRBS1	17846	chr1:32497125:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	ZFPM1--GSE1	2	0	ZFPM1	3590	chr16:88555561:+	GSE1	21364	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZFPM1->chr16:88519725-88603424:+,zinc_finger_protein,_FOG_family_member_1,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	ZFPM1--SLC7A5	2	0	ZFPM1	3590	chr16:88555561:+	SLC7A5	21560	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	{Klijn_CCL:Skin=1},ZFPM1->chr16:88519725-88603424:+,zinc_finger_protein,_FOG_family_member_1,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	TTYH3--MAD1L1	1	3	TTYH3	1328	chr7:2671912:+	MAD1L1	47572	chr7:2041756:-	ONLY_REF_SPLICE	YES	174	39	0.02	0.09	0.0102	0.0305	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.02	0.09	0.0407	TRUE	0	4	0	1	2	TRUE	ACH-000423
SKMEL3_SKIN	AGO1--GNAL	1	1	AGO1	2334	chr1:36349047:+	GNAL	39212	chr18:11862394:+	ONLY_REF_SPLICE	YES	17	14	0.11	0.12	0.0102	0.0102	AGO1->argonaute_1,_RISC_catalytic_component,chr1:36335409-36395211:+,GNAL->G_protein_subunit_alpha_L,chr18:11688955-11885684:+	SKMEL3_SKIN	0.11	0.12	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYRK1A--BCL7A	87	18	DYRK1A	7496	chr21:38792686:+	BCL7A	36977	chr12:122492711:+	ONLY_REF_SPLICE	YES	4	46	0.96	0.7	1.0272	0.2125	DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A,BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.96	1.2397	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL7A--DYRK1A	58	28	BCL7A	7109	chr12:122481959:+	DYRK1A	24193	chr21:38844986:+	ONLY_REF_SPLICE	YES	55	5	0.61	0.95	0.6848	0.3306	BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+,DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.95	1.0154	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YTHDF1--KCNQ2	34	14	YTHDF1	6415	chr20:61833639:-	KCNQ2	30176	chr20:62039889:-	ONLY_REF_SPLICE	YES	64	0	0.43	1	0.4014	0.1653	YTHDF1->YTH_N6-methyladenosine_RNA_binding_protein_1,chr20:61826781-61847586:-,KCNQ2->chr20:62037542-62103993:-,potassium_voltage-gated_channel_subfamily_Q_member_2	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.5667	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF3C5--PSAP	22	0	GTF3C5	11957	chr9:135933494:+	PSAP	23931	chr10:73580083:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2598	0	GTF3C5->chr9:135906076-135933890:+,general_transcription_factor_IIIC_subunit_5,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2598	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYRK1A--BCL7A	7	2	DYRK1A	2839	chr21:38739930:+	BCL7A	36977	chr12:122492711:+	ONLY_REF_SPLICE	YES	0	46	1	0.16	0.0827	0.0236	DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A,BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.1063	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRBV5-3--TRBJ2-5	5	2	TRBV5-3	1474	chr7:142242274:-	TRBJ2-5	4478	chr7:142494813:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0.0236	HGNC_GENEFAM,TRBV5-3->T_cell_receptor_beta_variable_5-3_(non-functional),chr7:142242281-142242747:-,TRBJ2-5->T_cell_receptor_beta_joining_2-5,chr7:142494803-142494850:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0826	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EPB41--YTHDF2	3	0	EPB41	20868	chr1:29391670:+	YTHDF2	41708	chr1:29095441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	EPB41->chr1:29213603-29446553:+,erythrocyte_membrane_protein_band_4.1,YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMGA1--HNRNPH1	3	0	HMGA1	7773	chr6:34213782:+	HNRNPH1	18220	chr5:179046343:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	HMGA1->Oncogene{Bushman},chr6:34204650-34214008:+,high_mobility_group_AT-hook_1,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMOX2--TDP1	3	0	HMOX2	2722	chr16:4526488:+	TDP1	37827	chr14:90485660:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	HMOX2->chr16:4524691-4560348:+,heme_oxygenase_2,TDP1->chr14:90421283-90511106:+,tyrosyl-DNA_phosphodiesterase_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INVS--TMEFF1	3	0	INVS	5175	chr9:102888831:+	TMEFF1	32532	chr9:103261047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	INVS->chr9:102861538-103063282:+,inversin,TMEFF1->chr9:103204560-103339918:+,transmembrane_protein_with_EGF_like_and_two_follistatin_like_domains_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPS5--SECISBP2	3	0	MRPS5	6144	chr2:95775679:-	SECISBP2	44774	chr9:91973665:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	MRPS5->chr2:95752952-95815179:-,mitochondrial_ribosomal_protein_S5,SECISBP2->SECIS_binding_protein_2,chr9:91933421-91974557:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-930J4.4--C5orf51	3	0	RP5-930J4.4	1136	chr1:21069615:+	C5orf51	13191	chr5:41919110:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	RP5-930J4.4->chr1:21069480-21070455:+,C5orf51->chr5:41904290-41921738:+,chromosome_5_open_reading_frame_51	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2H--KMT2E	3	0	UBE2H	2497	chr7:129591118:-	KMT2E	20750	chr7:104678573:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	UBE2H->chr7:129470572-129592789:-,ubiquitin_conjugating_enzyme_E2_H,KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--PSMB1	2	0	AC131097.3	2273	chr2:242824786:+	PSMB1	13041	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AC131097.3->chr2:242823514-243020873:+,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	APEH--MAPKAPK5	2	0	APEH	7410	chr3:49718062:+	MAPKAPK5	21194	chr12:112308889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	APEH->Oncogene{Bushman},acylaminoacyl-peptide_hydrolase,chr3:49711435-49721396:+,MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP19--SRP9	2	0	ARHGAP19	3191	chr10:99025836:-	SRP9	22984	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ARHGAP19->Rho_GTPase_activating_protein_19,chr10:98978996-99052413:-,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	2	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGEF18--HSP90AA1	2	0	ARHGEF18	1135	chr19:7460133:+	HSP90AA1	28373	chr14:102552715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ARHGEF18->Rho/Rac_guanine_nucleotide_exchange_factor_18,chr19:7459999-7537363:+,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--ACAT2	2	0	BSG	2405	chr19:572701:+	ACAT2	16057	chr6:160183951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,ACAT2->acetyl-CoA_acetyltransferase_2,chr6:160181360-160200144:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C18orf25--NDUFV2	2	0	C18orf25	1778	chr18:43754296:+	NDUFV2	17730	chr18:9117836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMC4--GNAS	2	0	CMC4	1669	chrX:154298969:-	GNAS	24279	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	CMC4->C-x(9)-C_motif_containing_4,chrX:154289897-154299637:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCTN6--DPYSL2	2	0	DCTN6	1110	chr8:30013922:+	DPYSL2	16862	chr8:26439485:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6,DPYSL2->chr8:26371791-26515694:+,dihydropyrimidinase_like_2	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHX30--KLHL24	2	0	DHX30	2399	chr3:47846910:+	KLHL24	31211	chr3:183368084:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+,KLHL24->chr3:183353356-183402265:+,kelch_like_family_member_24	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK2--TBC1D14	2	0	DOCK2	24644	chr5:169174508:+	TBC1D14	76596	chr4:7000812:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:1/3694=0.03%,DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2,TBC1D14->TBC1_domain_family_member_14,chr4:6910969-7034845:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FANCC--YTHDC2	2	0	FANCC	18896	chr9:97873745:-	YTHDC2	56602	chr5:112926738:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-,YTHDC2->YTH_domain_containing_2,chr5:112849380-112930982:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	H3F3B--HP1BP3	2	0	H3F3B	1518	chr17:73781457:-	HP1BP3	18143	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPH1--CHORDC1	2	0	HNRNPH1	4526	chr5:179050038:-	CHORDC1	31464	chr11:89936595:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),CHORDC1->chr11:89934328-89956532:-,cysteine_and_histidine_rich_domain_containing_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0100--RP11-1149O23.3	2	0	KIAA0100	21050	chr17:26945809:-	RP11-1149O23.3	29337	chr8:23083318:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	KIAA0100->KIAA0100,chr17:26941458-26972472:-,RP11-1149O23.3->chr8:23081984-23088439:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LETMD1--KIF18B	2	0	LETMD1	2224	chr12:51442968:+	KIF18B	14600	chr17:43013726:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	LETMD1->LETM1_domain_containing_1,chr12:51441745-51454207:+,KIF18B->chr17:43002077-43025082:-,kinesin_family_member_18B	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00977--NEDD1	2	0	LINC00977	1074	chr8:130253423:-	NEDD1	11184	chr12:97311399:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977,NEDD1->chr12:97301001-97347129:+,neural_precursor_cell_expressed,_developmentally_down-regulated_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--SLC11A2	2	0	MLLT10	13812	chr10:21906136:+	SLC11A2	41276	chr12:51404549:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,SLC11A2->chr12:51373184-51422349:-,solute_carrier_family_11_member_2	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP85--PACRGL	2	0	NUP85	1136	chr17:73201889:+	PACRGL	26347	chr4:20706089:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NUP85->chr17:73201754-73231853:+,nucleoporin_85,PACRGL->PARK2_co-regulated_like,chr4:20697905-20754530:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PALLD--DCTD	2	0	PALLD	19548	chr4:169633074:+	DCTD	43732	chr4:183836728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	PALLD->chr4:169418217-169849608:+,palladin,_cytoskeletal_associated_protein,DCTD->chr4:183811213-183839089:-,dCMP_deaminase	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDCD5--ETFDH	2	0	PDCD5	2165	chr19:33073138:+	ETFDH	13021	chr4:159603347:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	PDCD5->chr19:33071974-33078358:+,programmed_cell_death_5,ETFDH->chr4:159593277-159630775:+,electron_transfer_flavoprotein_dehydrogenase	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKCA--VMP1	2	0	PRKCA	2421	chr17:64302245:+	VMP1	37794	chr17:57808782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1415C14.4--STAG3L5P	2	0	RP11-1415C14.4	4591	chr5:69493082:-	STAG3L5P	16253	chr7:99947340:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RP11-1415C14.4->chr5:69435402-69503572:-,STAG3L5P->chr7:99933702-99949523:+,stromal_antigen_3-like_5_pseudogene	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-29G8.3--PARPBP	2	0	RP11-29G8.3	6086	chr13:76169126:+	PARPBP	29574	chr12:102547647:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RP11-29G8.3->chr13:76123909-76381256:+,PARPBP->PARP1_binding_protein,chr12:102513956-102591298:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RSRC2--ZBTB1	2	0	RSRC2	5203	chr12:123005932:-	ZBTB1	24826	chr14:64988205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RSRC2->arginine/serine-rich_coiled-coil_2,chr12:122989190-123011547:-,ZBTB1->chr14:64970430-65000408:+,zinc_finger_and_BTB_domain_containing_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3KBP1--ZC4H2	2	0	SH3KBP1	11946	chrX:19701941:-	ZC4H2	38917	chrX:64141868:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-,ZC4H2->chrX:64136250-64254593:-,zinc_finger_C4H2-type_containing	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLAIN2--ZBTB1	2	0	SLAIN2	1807	chr4:48344145:+	ZBTB1	23767	chr14:64988205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+,ZBTB1->chr14:64970430-65000408:+,zinc_finger_and_BTB_domain_containing_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A25--PPM1F	2	0	SLC25A25	1380	chr9:130830859:+	PPM1F	27540	chr22:22280035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SLC25A25->chr9:130830480-130871524:+,solute_carrier_family_25_member_25,PPM1F->chr22:22273793-22307209:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1F	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG3--PTP4A2	2	0	SNHG3	3181	chr1:28834672:+	PTP4A2	17317	chr1:32385259:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP2--EIF3M	2	0	SSBP2	1817	chr5:81046800:-	EIF3M	36906	chr11:32610558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAM--RSU1	2	0	STAM	1255	chr10:17686378:+	RSU1	20851	chr10:16824083:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	STAM->chr10:17686124-17757913:+,signal_transducing_adaptor_molecule,RSU1->Ras_suppressor_protein_1,chr10:16632610-16859527:-	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SYPL1--HBP1	2	0	SYPL1	1437	chr7:105752586:-	HBP1	24150	chr7:106840605:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SYPL1->chr7:105730949-105753022:-,synaptophysin_like_1,HBP1->HMG-box_transcription_factor_1,Oncogene{Bushman},chr7:106809406-106842974:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMX2--EIF3M	2	0	TMX2	1208	chr11:57480279:+	EIF3M	12228	chr11:32611093:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZBED3-AS1--TRAK1	2	0	ZBED3-AS1	1880	chr5:76383444:+	TRAK1	46537	chr3:42251259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZBED3-AS1->ZBED3_antisense_RNA_1,chr5:76382565-76462734:+,TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF28--ASUN	2	0	ZNF28	3201	chr19:53321197:-	ASUN	22650	chr12:27078784:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF28->chr19:53300662-53360853:-,zinc_finger_protein_28,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF627--SMARCA4	2	0	ZNF627	6303	chr19:11708445:+	SMARCA4	47768	chr19:11143966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF627->chr19:11670189-11729950:+,zinc_finger_protein_627,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF644--RPL21	2	0	ZNF644	1283	chr1:91487547:-	RPL21	19934	chr13:27827902:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,RPL21->chr13:27825446-27830828:+,ribosomal_protein_L21	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYRK1A--BCL7A	1	2	DYRK1A	7496	chr21:38792686:+	BCL7A	38162	chr12:122496998:+	ONLY_REF_SPLICE	NO	4	75	0.43	0.04	0.0118	0.0236	DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A,BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.43	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MNX1-AS1--MYB	16	3	MNX1-AS1	2983	chr7:156809062:+	MYB	7290	chr6:135507041:+	INCL_NON_REF_SPLICE	YES	0	10	1	0.66	0.1638	0.0307	MNX1-AS1->MNX1_antisense_RNA_1_(head_to_head),chr7:156803499-156809120:+,MYB->ArcherDX_panel,FoundationOne_panel,MYB_proto-oncogene,_transcription_factor,Oncogene{Bushman},chr6:135502453-135540311:+	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	1	0.1945	TRUE	0	0	0	1	0	TRUE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MNX1-AS1--MYB	3	2	MNX1-AS1	1503	chr7:156804001:+	MYB	7290	chr6:135507041:+	ONLY_REF_SPLICE	YES	32	10	0.14	0.33	0.0307	0.0205	MNX1-AS1->MNX1_antisense_RNA_1_(head_to_head),chr7:156803499-156809120:+,MYB->ArcherDX_panel,FoundationOne_panel,MYB_proto-oncogene,_transcription_factor,Oncogene{Bushman},chr6:135502453-135540311:+	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.33	0.0512	TRUE	0	0	0	1	0	TRUE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--ITPR2	2	0	CHD2	6529	chr15:93444529:+	ITPR2	79623	chr12:26808785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUTC--FUNDC1	2	0	CUTC	4722	chr10:101496074:+	FUNDC1	16371	chrX:44401347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CUTC->chr10:101462315-101515891:+,cutC_copper_transporter,FUNDC1->FUN14_domain_containing_1,chrX:44382885-44402247:-	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000081
HLF_LIVER	NOTCH2NL--AC073254.1	43	28	NOTCH2NL	4800	chr1:145248894:+	AC073254.1	20541	chr2:233460646:-	ONLY_REF_SPLICE	YES	354	0	0.17	1	0.4433	0.2886	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,AC073254.1->chr2:233445658-233476681:-	HLF_LIVER	0.17	1	0.7319	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	RP11-307P5.1--SASH1	32	8	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	11	12	0.78	0.77	0.3299	0.0825	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HLF_LIVER	0.77	0.78	0.4124	TRUE	0	0	0	16	0	TRUE	ACH-000393
HLF_LIVER	RP11-459O1.2--CNR1	10	13	RP11-459O1.2	2236	chr6:89033719:-	CNR1	14602	chr6:88855056:-	ONLY_REF_SPLICE	YES	0	12	1	0.66	0.1031	0.134	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HLF_LIVER	0.66	1	0.2371	TRUE	0	1	0	2	1	TRUE	ACH-000393
HLF_LIVER	NOTCH2NL--AC073254.1	5	8	NOTCH2NL	4800	chr1:145248894:+	AC073254.1	23853	chr2:233451456:-	ONLY_REF_SPLICE	YES	354	2	0.04	0.87	0.0515	0.0825	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,AC073254.1->chr2:233445658-233476681:-	HLF_LIVER	0.04	0.87	0.134	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	RP11-459O1.2--CNR1	2	14	RP11-459O1.2	2236	chr6:89033719:-	CNR1	7968	chr6:88874013:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0.1443	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HLF_LIVER	1	1	0.1649	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	RP11-459O1.2--CNR1	2	14	RP11-459O1.2	2236	chr6:89033719:-	CNR1	13431	chr6:88857525:-	ONLY_REF_SPLICE	YES	0	4	1	0.8	0.0206	0.1443	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HLF_LIVER	0.8	1	0.1649	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	CCDC157--HORMAD2	5	0	CCDC157	1498	chr22:30753121:+	HORMAD2	28170	chr22:30572052:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0515	0	CCDC157->chr22:30752624-30774647:+,coiled-coil_domain_containing_157,HORMAD2->HORMA_domain_containing_2,chr22:30476163-30573064:+	HLF_LIVER	1	1	0.0515	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	RP11-307P5.1--SASH1	2	9	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	159	12	0.06	0.48	0.0206	0.0928	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HLF_LIVER	0.06	0.48	0.1134	TRUE	0	0	0	11	0	TRUE	ACH-000393
HLF_LIVER	CITED2--COL12A1	4	0	CITED2	2124	chr6:139694634:-	COL12A1	31488	chr6:75851856:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	CITED2->Cbp/p300_interacting_transactivator_with_Glu/Asp_rich_carboxy-terminal_domain_2,Oncogene{Bushman},chr6:139693393-139695757:-,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	HLF_LIVER	1	1	0.0412	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	RP11-459O1.2--CNR1	3	3	RP11-459O1.2	1090	chr6:89130663:-	CNR1	14602	chr6:88855056:-	ONLY_REF_SPLICE	YES	3	12	0.67	0.33	0.0309	0.0309	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HLF_LIVER	0.33	0.67	0.0618	TRUE	0	1	0	2	1	TRUE	ACH-000393
HLF_LIVER	AP003900.6--AC008132.1	1	6	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	49	9	0.12	0.44	0.0103	0.0619	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HLF_LIVER	0.12	0.44	0.0722	TRUE	0	0	0	13	0	TRUE	ACH-000393
HLF_LIVER	ADAM17--YWHAQ	2	0	ADAM17	1284	chr2:9695638:-	YWHAQ	29763	chr2:9731644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[28180],ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	HLF_LIVER	1	1	0.0206	TRUE	0	4	0	5	2	TRUE	ACH-000393
HLF_LIVER	ASPH--SP1	2	0	ASPH	8053	chr8:62593527:-	SP1	50342	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	ATP6V1H--ZNF507	2	0	ATP6V1H	2981	chr8:54754138:-	ZNF507	34170	chr19:32851410:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-,ZNF507->chr19:32836500-32878573:+,zinc_finger_protein_507	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	C12orf65--CORO1C	2	0	C12orf65	1979	chr12:123718441:+	CORO1C	18295	chr12:109095099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	C12orf65->chr12:123717463-123742506:+,chromosome_12_open_reading_frame_65,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	DPYD--LSMEM1	2	0	DPYD	16809	chr1:98039316:-	LSMEM1	40328	chr7:112129865:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,LSMEM1->chr7:112120908-112131117:+,leucine_rich_single-pass_membrane_protein_1	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	EMC8--COTL1	2	0	EMC8	1544	chr16:85832671:-	COTL1	21402	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	EMC8->ER_membrane_protein_complex_subunit_8,chr16:85805364-85833214:-,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	HLF_LIVER	1	1	0.0206	TRUE	0	6	0	16	3	TRUE	ACH-000393
HLF_LIVER	FLNA--SHC1	2	0	FLNA	9497	chrX:153590347:-	SHC1	31396	chr1:154938553:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	FLNA->chrX:153576892-153603006:-,filamin_A,SHC1->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_transforming_protein_1,chr1:154934774-154946871:-	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	MCM5--TSR3	2	0	MCM5	15791	chr22:35816005:+	TSR3	24816	chr16:1401001:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	MCM5->Oncogene{Bushman},chr22:35796056-35821423:+,minichromosome_maintenance_complex_component_5,TSR3->TSR3,_acp_transferase_ribosome_maturation_factor,chr16:1399241-1401912:-	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	MIB1--ITGB1	2	0	MIB1	1167	chr18:19285084:+	ITGB1	47409	chr10:33224486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	PLAC8--COQ2	2	0	PLAC8	5072	chr4:84035819:-	COQ2	18884	chr4:84200267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	PLAC8->chr4:84011201-84058228:-,placenta_specific_8,COQ2->chr4:84182689-84206067:-,coenzyme_Q2,_polyprenyltransferase	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	RP11-459O1.2--CNR1	1	4	RP11-459O1.2	1090	chr6:89130663:-	CNR1	13431	chr6:88857525:-	ONLY_REF_SPLICE	NO	3	4	0.62	0.56	0.0103	0.0412	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HLF_LIVER	0.56	0.62	0.0515	TRUE	0	1	0	1	1	TRUE	ACH-000393
HLF_LIVER	SERPINE1--MRPS18B	2	0	SERPINE1	4857	chr7:100775350:+	MRPS18B	17565	chr6:30592660:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MRPS18B->chr6:30585486-30594172:+,mitochondrial_ribosomal_protein_S18B	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	UVSSA--MAEA	2	0	UVSSA	1924	chr4:1341977:+	MAEA	26629	chr4:1305767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	HLF_LIVER	1	1	0.0206	TRUE	0	3	0	4	2	TRUE	ACH-000393
HLF_LIVER	VAPB--GNAS	2	0	VAPB	1396	chr20:56964573:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HLF_LIVER	1	1	0.0206	TRUE	0	3	0	7	1	TRUE	ACH-000393
HLF_LIVER	AP003900.6--RP11-417J8.1	1	3	AP003900.6	3299	chr21:11174002:+	RP11-417J8.1	9132	chr1:142557333:+	ONLY_REF_SPLICE	YES	49	18	0.08	0.18	0.0103	0.0309	AP003900.6->chr21:11169720-11184046:+,RP11-417J8.1->chr1:142553293-142559170:+	HLF_LIVER	0.08	0.18	0.0412	TRUE	0	0	0	1	0	TRUE	ACH-000393
HCC1428_BREAST	ESR1--CCDC170	181	62	ESR1	3373	chr6:152023140:+	CCDC170	43783	chr6:151936578:+	ONLY_REF_SPLICE	YES	0	5	1	0.98	1.4738	0.5048	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	HCC1428_BREAST	0.98	1	1.9786	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	NGFR--SPAG9	178	63	NGFR	5719	chr17:47584020:+	SPAG9	41158	chr17:49067233:-	ONLY_REF_SPLICE	YES	0	146	1	0.62	1.4493	0.513	{Klijn_CCL:Breast=1},NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor,SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9	HCC1428_BREAST	0.62	1	1.9623	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	SPAG9--NGFR	134	43	SPAG9	27482	chr17:49067811:-	NGFR	52230	chr17:47587774:+	ONLY_REF_SPLICE	YES	152	0	0.54	1	1.0911	0.3501	{Klijn_CCL:Breast=1},SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor	HCC1428_BREAST	0.54	1	1.4412	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	SLC37A1--ABCG1	126	52	SLC37A1	19544	chr21:43979199:+	ABCG1	47447	chr21:43697005:+	ONLY_REF_SPLICE	YES	33	24	0.84	0.88	1.0259	0.4234	{Klijn_CCL:Breast=1},SLC37A1->chr21:43916118-44001550:+,solute_carrier_family_37_member_1,ABCG1->ATP_binding_cassette_subfamily_G_member_1,chr21:43619799-43717354:+	HCC1428_BREAST	0.84	0.88	1.4493	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	RP11-206L10.11--PLA2G2D	106	50	RP11-206L10.11	2270	chr1:764484:+	PLA2G2D	21380	chr1:20442970:-	ONLY_REF_SPLICE	YES	134	0	0.54	1	0.8631	0.4071	RP11-206L10.11->chr1:762988-794826:+,PLA2G2D->chr1:20438432-20446050:-,phospholipase_A2_group_IID	HCC1428_BREAST	0.54	1	1.2702	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	RNF187--OBSCN	59	10	RNF187	2992	chr1:228676753:+	OBSCN	83381	chr1:228538542:+	ONLY_REF_SPLICE	YES	130	1	0.35	0.99	0.4804	0.0814	RNF187->chr1:228674762-228683467:+,ring_finger_protein_187,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	HCC1428_BREAST	0.35	0.99	0.5618	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MINOS1--HS2ST1	56	6	MINOS1	1127	chr1:19923603:+	HS2ST1	21415	chr1:87538617:+	ONLY_REF_SPLICE	YES	240	46	0.21	0.57	0.456	0.0489	MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1	HCC1428_BREAST	0.21	0.57	0.5049	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	VPS13D--IFFO2	52	7	VPS13D	9991	chr1:12318160:+	IFFO2	97817	chr1:19238577:-	ONLY_REF_SPLICE	YES	9	8	0.87	0.88	0.4234	0.057	VPS13D->chr1:12290124-12572099:+,vacuolar_protein_sorting_13_homolog_D,IFFO2->chr1:19230775-19283180:-,intermediate_filament_family_orphan_2	HCC1428_BREAST	0.87	0.88	0.4804	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	ZYG11A--RP11-335E6.2	46	15	ZYG11A	8974	chr1:53333449:+	RP11-335E6.2	22251	chr1:63628418:+	ONLY_REF_SPLICE	YES	6	0	0.91	1	0.3745	0.1221	ZYG11A->chr1:53308183-53360670:+,zyg-11_family_member_A,_cell_cycle_regulator,RP11-335E6.2->chr1:63604921-63628824:+	HCC1428_BREAST	0.91	1	0.4966	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	SIRT3--CD151	37	9	SIRT3	7732	chr11:224078:-	CD151	17644	chr11:834530:+	ONLY_REF_SPLICE	YES	1	5	0.98	0.9	0.3013	0.0733	SIRT3->chr11:215458-236931:-,sirtuin_3,CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+	HCC1428_BREAST	0.9	0.98	0.3746	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	CDK5RAP2--MEGF9	37	8	CDK5RAP2	5802	chr9:123307992:-	MEGF9	55388	chr9:123385033:-	ONLY_REF_SPLICE	YES	46	40	0.49	0.53	0.3013	0.0651	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[20643],CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,MEGF9->chr9:123363091-123476748:-,multiple_EGF_like_domains_9	HCC1428_BREAST	0.49	0.53	0.3664	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	SLC37A1--ABCG1	26	32	SLC37A1	19544	chr21:43979199:+	ABCG1	48498	chr21:43702384:+	ONLY_REF_SPLICE	YES	33	24	0.64	0.71	0.2117	0.2606	{Klijn_CCL:Breast=1},SLC37A1->chr21:43916118-44001550:+,solute_carrier_family_37_member_1,ABCG1->ATP_binding_cassette_subfamily_G_member_1,chr21:43619799-43717354:+	HCC1428_BREAST	0.64	0.71	0.4723	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	TTC39C--LAMA3	31	5	TTC39C	6470	chr18:21644152:+	LAMA3	72360	chr18:21461900:+	ONLY_REF_SPLICE	YES	10	15	0.78	0.71	0.2524	0.0407	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[37707],TTC39C->chr18:21572737-21715574:+,tetratricopeptide_repeat_domain_39C,LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3	HCC1428_BREAST	0.71	0.78	0.2931	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	NGFR--SPAG9	20	35	NGFR	5719	chr17:47584020:+	SPAG9	41203	chr17:49067188:-	ONLY_REF_SPLICE	YES	0	126	1	0.3	0.1628	0.285	{Klijn_CCL:Breast=1},NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor,SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9	HCC1428_BREAST	0.3	1	0.4478	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	C1orf159--OPRD1	24	7	C1orf159	7717	chr1:1025733:-	OPRD1	18880	chr1:29185466:+	ONLY_REF_SPLICE	YES	31	0	0.5	1	0.1954	0.057	C1orf159->chr1:1017198-1051741:-,chromosome_1_open_reading_frame_159,OPRD1->chr1:29138654-29190208:+,opioid_receptor_delta_1	HCC1428_BREAST	0.5	1	0.2524	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	NCS1--GPR107	22	1	NCS1	1150	chr9:132935006:+	GPR107	18466	chr9:132837915:+	ONLY_REF_SPLICE	YES	5	134	0.82	0.15	0.1791	0.0081	LOCAL_REARRANGEMENT:+:[32409],NCS1->chr9:132934857-132999583:+,neuronal_calcium_sensor_1,GPR107->G_protein-coupled_receptor_107,chr9:132815705-132902448:+	HCC1428_BREAST	0.15	0.82	0.1872	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	NGFR--SPAG9	11	35	NGFR	5719	chr17:47584020:+	SPAG9	41206	chr17:49067185:-	INCL_NON_REF_SPLICE	YES	0	131	1	0.26	0.0896	0.285	{Klijn_CCL:Breast=1},NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor,SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9	HCC1428_BREAST	0.26	1	0.3746	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	RP11-206L10.11--PLA2G2D	6	50	RP11-206L10.11	4517	chr1:776753:+	PLA2G2D	21380	chr1:20442970:-	ONLY_REF_SPLICE	YES	116	0	0.33	1	0.0489	0.4071	RP11-206L10.11->chr1:762988-794826:+,PLA2G2D->chr1:20438432-20446050:-,phospholipase_A2_group_IID	HCC1428_BREAST	0.33	1	0.456	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	ZNF362--ROR1	16	3	ZNF362	7176	chr1:33747412:+	ROR1	16891	chr1:64474977:+	ONLY_REF_SPLICE	YES	36	0	0.35	1	0.1303	0.0244	ZNF362->chr1:33722146-33766320:+,zinc_finger_protein_362,ROR1->chr1:64239693-64647181:+,receptor_tyrosine_kinase-like_orphan_receptor_1	HCC1428_BREAST	0.35	1	0.1547	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	PDE8A--SLC28A1	15	4	PDE8A	8668	chr15:85620018:+	SLC28A1	42454	chr15:85461755:+	ONLY_REF_SPLICE	YES	9	0	0.68	1	0.1221	0.0326	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[4795],PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SLC28A1->chr15:85427885-85518876:+,solute_carrier_family_28_member_1	HCC1428_BREAST	0.68	1	0.1547	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	HIVEP3--HEYL	15	2	HIVEP3	9521	chr1:42166587:-	HEYL	33234	chr1:40098387:-	ONLY_REF_SPLICE	YES	2	9	0.89	0.65	0.1221	0.0163	HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3,HEYL->chr1:40089825-40105617:-,hes_related_family_bHLH_transcription_factor_with_YRPW_motif-like	HCC1428_BREAST	0.65	0.89	0.1384	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	ZYG11A--RP11-335E6.2	10	10	ZYG11A	8974	chr1:53333449:+	RP11-335E6.2	22300	chr1:63628467:+	INCL_NON_REF_SPLICE	YES	6	4	0.77	0.83	0.0814	0.0814	ZYG11A->chr1:53308183-53360670:+,zyg-11_family_member_A,_cell_cycle_regulator,RP11-335E6.2->chr1:63604921-63628824:+	HCC1428_BREAST	0.77	0.83	0.1628	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	ESPNP--NRD1	11	4	ESPNP	4165	chr1:17033783:-	NRD1	19572	chr1:52306186:-	ONLY_REF_SPLICE	YES	5	166	0.75	0.08	0.0896	0.0326	ESPNP->chr1:17013834-17046652:-,espin_pseudogene,NRD1->chr1:52254863-52344477:-	HCC1428_BREAST	0.08	0.75	0.1222	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	SLC9A2--IL1RL2	11	3	SLC9A2	4146	chr2:103281809:+	IL1RL2	31863	chr2:102842358:+	ONLY_REF_SPLICE	YES	15	0	0.48	1	0.0896	0.0244	SLC9A2->Oncogene{Bushman},chr2:103236166-103327777:+,solute_carrier_family_9_member_A2,IL1RL2->chr2:102803433-102856462:+,interleukin_1_receptor_like_2	HCC1428_BREAST	0.48	1	0.114	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	PLEKHF2--NDUFAF6	10	4	PLEKHF2	1227	chr8:96146258:+	NDUFAF6	20672	chr8:96044223:+	ONLY_REF_SPLICE	YES	104	80	0.12	0.15	0.0814	0.0326	LOCAL_REARRANGEMENT:+:[17349],PLEKHF2->chr8:96146032-96168912:+,pleckstrin_homology_and_FYVE_domain_containing_2,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1428_BREAST	0.12	0.15	0.114	TRUE	0	1	0	1	1	TRUE	ACH-000352
HCC1428_BREAST	LRSAM1--GARNL3	10	1	LRSAM1	21987	chr9:130255176:+	GARNL3	53309	chr9:130111203:+	ONLY_REF_SPLICE	YES	35	10	0.24	0.52	0.0814	0.0081	LOCAL_REARRANGEMENT:+:[57826],LRSAM1->chr9:130213765-130265780:+,leucine_rich_repeat_and_sterile_alpha_motif_containing_1,GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+	HCC1428_BREAST	0.24	0.52	0.0895	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	SLC37A1--ABCG1	7	9	SLC37A1	18412	chr21:43974252:+	ABCG1	47447	chr21:43697005:+	ONLY_REF_SPLICE	YES	76	24	0.17	0.4	0.057	0.0733	{Klijn_CCL:Breast=1},SLC37A1->chr21:43916118-44001550:+,solute_carrier_family_37_member_1,ABCG1->ATP_binding_cassette_subfamily_G_member_1,chr21:43619799-43717354:+	HCC1428_BREAST	0.17	0.4	0.1303	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	AC006435.1--TET1	9	0	AC006435.1	2043	chr17:2317689:-	TET1	7377	chr10:70331974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0733	0	AC006435.1->chr17:2310279-2318731:-,TET1->Oncogene{Bushman},chr10:70320413-70454239:+,tet_methylcytosine_dioxygenase_1	HCC1428_BREAST	1	1	0.0733	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	RP11-622K12.1--ZNF252P	8	1	RP11-622K12.1	2468	chrX:56758632:+	ZNF252P	9378	chr8:146225155:-	ONLY_REF_SPLICE	YES	114	3	0.07	0.75	0.0651	0.0081	RP11-622K12.1->chrX:56755692-56844813:+,ZNF252P->chr8:146198975-146228281:-,zinc_finger_protein_252,_pseudogene	HCC1428_BREAST	0.07	0.75	0.0732	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	RP11-206L10.11--PLA2G2D	5	10	RP11-206L10.11	1168	chr1:763155:+	PLA2G2D	21380	chr1:20442970:-	ONLY_REF_SPLICE	YES	32	0	0.32	1	0.0407	0.0814	RP11-206L10.11->chr1:762988-794826:+,PLA2G2D->chr1:20438432-20446050:-,phospholipase_A2_group_IID	HCC1428_BREAST	0.32	1	0.1221	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	AL035610.2--AP001604.3	7	0	AL035610.2	7972	chr21:29535921:-	AP001604.3	16956	chr21:28771893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	AL035610.2->chr21:29488413-29600986:-,AP001604.3->chr21:28731204-28820898:-	HCC1428_BREAST	1	1	0.057	TRUE	0	2	0	3	2	TRUE	ACH-000352
HCC1428_BREAST	ESR1--CCDC170	1	19	ESR1	2242	chr6:152011799:+	CCDC170	43783	chr6:151936578:+	ONLY_REF_SPLICE	YES	18	5	0.53	0.8	0.0081	0.1547	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	HCC1428_BREAST	0.53	0.8	0.1628	TRUE	0	1	0	1	1	TRUE	ACH-000352
HCC1428_BREAST	RNF187--OBSCN	5	1	RNF187	2992	chr1:228676753:+	OBSCN	84991	chr1:228540652:+	ONLY_REF_SPLICE	YES	130	15	0.04	0.29	0.0407	0.0081	RNF187->chr1:228674762-228683467:+,ring_finger_protein_187,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	HCC1428_BREAST	0.04	0.29	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	LUZP1--RP5-952N6.1	4	3	LUZP1	2577	chr1:23495259:-	RP5-952N6.1	25946	chr1:71250869:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0326	0.0244	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,RP5-952N6.1->chr1:71172136-71252151:+	HCC1428_BREAST	0.88	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	FRS2--LYZ	4	1	FRS2	1182	chr12:69864310:+	LYZ	24912	chr12:69743888:+	ONLY_REF_SPLICE	YES	129	0	0.04	1	0.0326	0.0081	GTEx&tcga_normals:6/3694=0.16%,YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,LYZ->chr12:69742121-69748014:+,lysozyme	HCC1428_BREAST	0.04	1	0.0407	TRUE	0	2	0	1	1	TRUE	ACH-000352
HCC1428_BREAST	USP3--RP11-321G12.1	4	0	USP3	1237	chr15:63797029:+	RP11-321G12.1	33906	chr15:63690586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[67446],USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3,RP11-321G12.1->chr15:63682335-63729347:+	HCC1428_BREAST	1	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	DNAJC6--PIK3R3	2	5	DNAJC6	2273	chr1:65720332:+	PIK3R3	34450	chr1:46546422:-	ONLY_REF_SPLICE	YES	15	72	0.32	0.09	0.0163	0.0407	DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,PIK3R3->chr1:46505812-46642160:-,phosphoinositide-3-kinase_regulatory_subunit_3	HCC1428_BREAST	0.09	0.32	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	ELL2--AC008592.7	3	1	ELL2	2545	chr5:95278706:-	AC008592.7	22763	chr5:95306000:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0244	0.0081	LOCAL_REARRANGEMENT:-:[2928],ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2,AC008592.7->chr5:95300703-95322015:-	HCC1428_BREAST	0.57	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	PDE8A--SLC28A1	3	1	PDE8A	7799	chr15:85619149:+	SLC28A1	42480	chr15:85461781:+	INCL_NON_REF_SPLICE	YES	5	0	0.44	1	0.0244	0.0081	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[4795],PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SLC28A1->chr15:85427885-85518876:+,solute_carrier_family_28_member_1	HCC1428_BREAST	0.44	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	RP11-206L10.11--PLA2G2A	2	5	RP11-206L10.11	2270	chr1:764484:+	PLA2G2A	21841	chr1:20305372:-	ONLY_REF_SPLICE	YES	134	0	0.05	1	0.0163	0.0407	RP11-206L10.11->chr1:762988-794826:+,PLA2G2A->Oncogene{Bushman},chr1:20301925-20306932:-,phospholipase_A2_group_IIA	HCC1428_BREAST	0.05	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	SEPT9--METAP1	3	0	SEPT9	30894	chr17:75478417:+	METAP1	62502	chr4:99978904:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1	HCC1428_BREAST	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	SRPK1--SLC26A8	2	1	SRPK1	1875	chr6:35888245:-	SLC26A8	44806	chr6:35912117:-	ONLY_REF_SPLICE	NO	43	0	0.07	1	0.0163	0.0081	LOCAL_REARRANGEMENT:-:[22172],SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-,SLC26A8->chr6:35911291-35992645:-,solute_carrier_family_26_member_8	HCC1428_BREAST	0.07	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	DNAJC6--PIK3R3	2	0	DNAJC6	1085	chr1:65713986:+	PIK3R3	34450	chr1:46546422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,PIK3R3->chr1:46505812-46642160:-,phosphoinositide-3-kinase_regulatory_subunit_3	HCC1428_BREAST	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	DOCK1--BCCIP	2	0	DOCK1	30893	chr10:129055693:+	BCCIP	70361	chr10:127529824:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,BCCIP->BRCA2_and_CDKN1A_interacting_protein,chr10:127512115-127542264:+	HCC1428_BREAST	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	ESPNP--NRD1	2	0	ESPNP	3561	chr1:17034387:-	NRD1	19572	chr1:52306186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	ESPNP->chr1:17013834-17046652:-,espin_pseudogene,NRD1->chr1:52254863-52344477:-	HCC1428_BREAST	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	HCC1428_BREAST	1	1	0.0163	TRUE	0	0	0	11	0	TRUE	ACH-000352
HCC1428_BREAST	RIOK2--RHOBTB3	2	0	RIOK2	1135	chr5:96518830:-	RHOBTB3	24554	chr5:95084037:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	RIOK2->RIO_kinase_2,chr5:96496571-96518964:-,RHOBTB3->Rho_related_BTB_domain_containing_3,chr5:95049226-95160087:+	HCC1428_BREAST	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	LUZP1--RP5-952N6.1	1	3	LUZP1	2577	chr1:23495259:-	RP5-952N6.1	22529	chr1:71177740:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0081	0.0244	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,RP5-952N6.1->chr1:71172136-71252151:+	HCC1428_BREAST	0.8	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	PDE8A--SLC28A1	1	1	PDE8A	8668	chr15:85620018:+	SLC28A1	43535	chr15:85464220:+	ONLY_REF_SPLICE	YES	9	0	0.18	1	0.0081	0.0081	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[4795],PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SLC28A1->chr15:85427885-85518876:+,solute_carrier_family_28_member_1	HCC1428_BREAST	0.18	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	PDE8A--SLC28A1	1	1	PDE8A	6742	chr15:85610435:+	SLC28A1	42454	chr15:85461755:+	ONLY_REF_SPLICE	YES	9	0	0.18	1	0.0081	0.0081	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[4795],PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SLC28A1->chr15:85427885-85518876:+,solute_carrier_family_28_member_1	HCC1428_BREAST	0.18	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000352
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	1076	356	TCF3	13408	chr19:1619110:-	PBX1	46216	chr1:164761731:+	ONLY_REF_SPLICE	YES	605	0	0.7	1	10.8841	3.6011	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	1	14.4852	TRUE	0	0	0	4	0	TRUE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	7	0	PTMA	6024	chr2:232576657:+	ANP32B	19883	chr9:100777658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0708	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0708	TRUE	0	0	0	3	0	TRUE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PABPC1--TKT	3	0	PABPC1	1996	chr8:101734042:-	TKT	18445	chr3:53289981:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,TKT->chr3:53258723-53290068:-,transketolase	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	3	0	PTMA	6002	chr2:232576635:+	ANP32B	18858	chr9:100774742:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0303	TRUE	0	0	0	3	0	TRUE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU2--KPNA3	2	0	DLEU2	1419	chr13:50699438:-	KPNA3	16213	chr13:50321129:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),KPNA3->chr13:50273447-50367057:-,karyopherin_subunit_alpha_3	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	1	0	1	1	TRUE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	METAP1--EIF4E	2	0	METAP1	1248	chr4:99917018:+	EIF4E	28557	chr4:99823133:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	{Klijn_CCL:Sarcomatoid=1,Stomach=1},LOCAL_INVERSION:+:-:[64983],METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	1	0	7	1	TRUE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHF7--RBBP6	2	0	PHF7	4385	chr3:52448603:+	RBBP6	14749	chr16:24551933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	PHF7->PHD_finger_protein_7,chr3:52444673-52457657:+,RBBP6->Oncogene{Bushman},chr16:24549014-24584184:+,retinoblastoma_binding_protein_6	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000070
NCIH526_LUNG	NBAS--AC010145.4	539	583	NBAS	5992	chr2:15691617:-	AC010145.4	64317	chr2:16137534:-	ONLY_REF_SPLICE	YES	771	0	0.59	1	6.5975	7.1361	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC010145.4->chr2:16137171-16203007:-	NCIH526_LUNG	0.59	1	13.7336	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	NBAS--DDX1	217	160	NBAS	8260	chr2:15676542:-	DDX1	74205	chr2:15753348:+	ONLY_REF_SPLICE	YES	844	6285	0.31	0.06	2.6561	1.9584	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	NCIH526_LUNG	0.06	0.31	4.6145	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	NBAS--AC010145.4	4	988	NBAS	35026	chr2:15506704:-	AC010145.4	62912	chr2:16203007:-	ONLY_REF_SPLICE	YES	617	0	0.62	1	0.049	12.0934	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC010145.4->chr2:16137171-16203007:-	NCIH526_LUNG	0.62	1	12.1424	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	XPR1--TRMT1L	112	50	XPR1	2319	chr1:180651547:+	TRMT1L	37286	chr1:185097879:-	ONLY_REF_SPLICE	YES	65	89	0.71	0.65	1.3709	0.612	XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,TRMT1L->chr1:185087220-185126204:-,tRNA_methyltransferase_1_like	NCIH526_LUNG	0.65	0.71	1.9829	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	DHX9--LINC01035	85	52	DHX9	21901	chr1:182850782:+	LINC01035	29239	chr1:188874812:+	INCL_NON_REF_SPLICE	YES	655	0	0.17	1	1.0404	0.6365	DHX9->DEAH-box_helicase_9,Oncogene{Bushman},chr1:182808504-182856886:+,LINC01035->chr1:188874819-189006393:+,long_intergenic_non-protein_coding_RNA_1035	NCIH526_LUNG	0.17	1	1.6769	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	SLC25A36--PLSCR1	66	88	SLC25A36	1266	chr3:140660937:+	PLSCR1	26213	chr3:146246618:-	ONLY_REF_SPLICE	YES	99	209	0.61	0.42	0.8079	1.0771	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	NCIH526_LUNG	0.42	0.61	1.885	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	CTD-3094K11.1--AC142119.1	48	25	CTD-3094K11.1	2308	chr15:91384514:+	AC142119.1	8867	chr2:16225605:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5875	0.306	CTD-3094K11.1->chr15:91382954-91384608:+,AC142119.1->chr2:16225344-16245963:-	NCIH526_LUNG	1	1	0.8935	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	HNRNPM--RPS28	44	33	HNRNPM	2515	chr19:8520458:+	RPS28	22867	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1257	52	0.06	0.6	0.5386	0.4039	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH526_LUNG	0.06	0.6	0.9425	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	KIAA0226--RNF13	33	39	KIAA0226	3878	chr3:197463526:-	RNF13	43297	chr3:149677843:+	ONLY_REF_SPLICE	YES	31	99	0.7	0.42	0.4039	0.4774	KIAA0226->chr3:197398264-197476598:-,RNF13->chr3:149530495-149679926:+,ring_finger_protein_13	NCIH526_LUNG	0.42	0.7	0.8813	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	CIT--RFC5	26	13	CIT	30009	chr12:120171969:-	RFC5	58164	chr12:118456877:+	ONLY_REF_SPLICE	YES	23	427	0.63	0.08	0.3182	0.1591	CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase,RFC5->chr12:118451393-118470935:+,replication_factor_C_subunit_5	NCIH526_LUNG	0.08	0.63	0.4773	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	SLC25A36--PLSCR1	18	40	SLC25A36	1266	chr3:140660937:+	PLSCR1	28102	chr3:146243434:-	ONLY_REF_SPLICE	YES	99	137	0.37	0.3	0.2203	0.4896	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	NCIH526_LUNG	0.3	0.37	0.7099	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	SLC25A36--PLSCR1	2	93	SLC25A36	1900	chr3:140661571:+	PLSCR1	26213	chr3:146246618:-	ONLY_REF_SPLICE	YES	107	209	0.47	0.31	0.0245	1.1383	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	NCIH526_LUNG	0.31	0.47	1.1628	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	CTD-3094K11.1--AC142119.1	18	20	CTD-3094K11.1	1177	chr15:91383130:+	AC142119.1	8867	chr2:16225605:-	ONLY_REF_SPLICE	YES	58	0	0.4	1	0.2203	0.2448	CTD-3094K11.1->chr15:91382954-91384608:+,AC142119.1->chr2:16225344-16245963:-	NCIH526_LUNG	0.4	1	0.4651	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	DHX9--LINC01035	11	44	DHX9	21901	chr1:182850782:+	LINC01035	29272	chr1:188874845:+	INCL_NON_REF_SPLICE	YES	655	0	0.08	1	0.1346	0.5386	DHX9->DEAH-box_helicase_9,Oncogene{Bushman},chr1:182808504-182856886:+,LINC01035->chr1:188874819-189006393:+,long_intergenic_non-protein_coding_RNA_1035	NCIH526_LUNG	0.08	1	0.6732	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	SIL1--DNAJC18	15	6	SIL1	18569	chr5:138386627:-	DNAJC18	33943	chr5:138775181:-	ONLY_REF_SPLICE	YES	8	0	0.72	1	0.1836	0.0734	SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,DNAJC18->DnaJ_heat_shock_protein_family_(Hsp40)_member_C18,chr5:138744279-138780180:-	NCIH526_LUNG	0.72	1	0.257	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	CACNA2D3--UTP6	11	7	CACNA2D3	7860	chr3:54420801:+	UTP6	45594	chr17:30226749:-	ONLY_REF_SPLICE	YES	4	291	0.82	0.06	0.1346	0.0857	CACNA2D3->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_3,chr3:54156574-55108584:+,UTP6->UTP6,_small_subunit_processome_component,chr17:30187923-30228784:-	NCIH526_LUNG	0.06	0.82	0.2203	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	RASAL2--RALGPS2	9	10	RASAL2	10528	chr1:178359341:+	RALGPS2	45656	chr1:178802559:+	ONLY_REF_SPLICE	YES	19	65	0.5	0.23	0.1102	0.1224	HGNC_GENEFAM,RASAL2->Oncogene{Bushman},RAS_protein_activator_like_2,chr1:178062864-178448644:+,RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+	NCIH526_LUNG	0.23	0.5	0.2326	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	SLC25A36--PLSCR1	3	33	SLC25A36	1266	chr3:140660937:+	PLSCR1	29221	chr3:146239840:-	ONLY_REF_SPLICE	YES	99	162	0.27	0.18	0.0367	0.4039	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	NCIH526_LUNG	0.18	0.27	0.4406	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	SLC25A36--PLSCR1	1	41	SLC25A36	1900	chr3:140661571:+	PLSCR1	28102	chr3:146243434:-	ONLY_REF_SPLICE	YES	107	137	0.28	0.23	0.0122	0.5019	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	NCIH526_LUNG	0.23	0.28	0.5141	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	AP000525.9--LA16c-60G3.6	11	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1346	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH526_LUNG	1	1	0.1346	TRUE	0	5	0	18	5	TRUE	ACH-000767
NCIH526_LUNG	XXYLT1--MED12L	9	5	XXYLT1	13847	chr3:194877178:-	MED12L	48583	chr3:151072909:+	ONLY_REF_SPLICE	YES	38	4	0.27	0.78	0.1102	0.0612	XXYLT1->Oncogene{Bushman},chr3:194789008-194991896:-,xyloside_xylosyltransferase_1,MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like	NCIH526_LUNG	0.27	0.78	0.1714	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	FBXO42--CROCCP3	7	8	FBXO42	3584	chr1:16632298:-	CROCCP3	22961	chr1:16817421:-	ONLY_REF_SPLICE	YES	59	12	0.2	0.56	0.0857	0.0979	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,CROCCP3->chr1:16793931-16825752:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_3	NCIH526_LUNG	0.2	0.56	0.1836	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	PRKCI--FAM194A	8	4	PRKCI	18733	chr3:170016898:+	FAM194A	28210	chr3:150416669:-	ONLY_REF_SPLICE	YES	57	0	0.17	1	0.0979	0.049	PRKCI->ArcherDX_panel,FoundationOne_panel,chr3:169940153-170023769:+,protein_kinase_C_iota,FAM194A->chr3:150377672-150421758:-	NCIH526_LUNG	0.17	1	0.1469	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	TNIK--A4GNT	8	4	TNIK	8225	chr3:170912314:-	A4GNT	46172	chr3:137850124:-	ONLY_REF_SPLICE	YES	22	0	0.35	1	0.0979	0.049	TNIK->TRAF2_and_NCK_interacting_kinase,chr3:170779128-171178197:-,A4GNT->alpha-1,4-N-acetylglucosaminyltransferase,chr3:137842560-137851229:-	NCIH526_LUNG	0.35	1	0.1469	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	KIAA0226--RNF13	6	2	KIAA0226	1459	chr3:197476140:-	RNF13	43297	chr3:149677843:+	ONLY_REF_SPLICE	YES	11	99	0.42	0.07	0.0734	0.0245	KIAA0226->chr3:197398264-197476598:-,RNF13->chr3:149530495-149679926:+,ring_finger_protein_13	NCIH526_LUNG	0.07	0.42	0.0979	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	CLEC16A--ATF7IP2	4	6	CLEC16A	25214	chr16:11154879:+	ATF7IP2	60354	chr16:10567336:+	ONLY_REF_SPLICE	YES	20	1	0.33	0.91	0.049	0.0734	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,ATF7IP2->activating_transcription_factor_7_interacting_protein_2,chr16:10420291-10577495:+	NCIH526_LUNG	0.33	0.91	0.1224	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	IFT122--EPHB1	4	5	IFT122	30703	chr3:129226605:+	EPHB1	60091	chr3:134825290:+	ONLY_REF_SPLICE	YES	117	5	0.07	0.64	0.049	0.0612	IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122,EPHB1->ArcherDX_panel,EPH_receptor_B1,FoundationOne_panel,chr3:134316643-134979309:+	NCIH526_LUNG	0.07	0.64	0.1102	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	MED12L--TNK2	3	5	MED12L	25907	chr3:151075164:+	TNK2	82176	chr3:195593887:-	ONLY_REF_SPLICE	NO	7	74	0.53	0.1	0.0367	0.0612	MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like,TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2	NCIH526_LUNG	0.1	0.53	0.0979	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	DLG2--SYTL2	4	0	DLG2	4613	chr11:85309701:-	SYTL2	67427	chr11:85456815:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.049	0	LOCAL_REARRANGEMENT:-:[66301],DLG2->chr11:83166055-85338966:-,discs_large_homolog_2,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	NCIH526_LUNG	1	1	0.049	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	FOXJ3--ZMYND12	3	4	FOXJ3	7672	chr1:42730786:-	ZMYND12	28074	chr1:42905696:-	ONLY_REF_SPLICE	YES	102	3	0.06	0.7	0.0367	0.049	LOCAL_REARRANGEMENT:-:[94452],FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,ZMYND12->chr1:42896000-42921938:-,zinc_finger_MYND-type_containing_12	NCIH526_LUNG	0.06	0.7	0.0857	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	PRMT1--RPS11	4	0	PRMT1	2531	chr19:50180573:+	RPS11	16750	chr19:50000451:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.049	0	GTEx&tcga_normals:1/3694=0.03%,PRMT1->chr19:50179043-50192286:+,protein_arginine_methyltransferase_1,RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11	NCIH526_LUNG	1	1	0.049	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	RIMS2--ATP6V1C1	3	2	RIMS2	1315	chr8:104513290:+	ATP6V1C1	50778	chr8:104053026:+	ONLY_REF_SPLICE	YES	17	103	0.23	0.05	0.0367	0.0245	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Breast=1},RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+	NCIH526_LUNG	0.05	0.23	0.0612	TRUE	0	1	0	1	1	TRUE	ACH-000767
NCIH526_LUNG	FBXO42--CROCCP3	1	5	FBXO42	3584	chr1:16632298:-	CROCCP3	23104	chr1:16817278:-	ONLY_REF_SPLICE	YES	59	15	0.09	0.29	0.0122	0.0612	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,CROCCP3->chr1:16793931-16825752:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_3	NCIH526_LUNG	0.09	0.29	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	FOXJ3--ZMYND12	1	5	FOXJ3	7672	chr1:42730786:-	ZMYND12	25760	chr1:42915730:-	ONLY_REF_SPLICE	YES	102	1	0.06	0.86	0.0122	0.0612	LOCAL_REARRANGEMENT:-:[94452],FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,ZMYND12->chr1:42896000-42921938:-,zinc_finger_MYND-type_containing_12	NCIH526_LUNG	0.06	0.86	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	RASAL2--RALGPS2	1	5	RASAL2	10528	chr1:178359341:+	RALGPS2	46783	chr1:178846633:+	ONLY_REF_SPLICE	YES	19	69	0.24	0.08	0.0122	0.0612	HGNC_GENEFAM,RASAL2->Oncogene{Bushman},RAS_protein_activator_like_2,chr1:178062864-178448644:+,RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+	NCIH526_LUNG	0.08	0.24	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	BRWD1--TTC3	2	0	BRWD1	4942	chr21:40670358:-	TTC3	75301	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH526_LUNG	1	1	0.0245	TRUE	0	1	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	CANX--HNRNPH1	2	0	CANX	9680	chr5:179135381:+	HNRNPH1	33289	chr5:179045324:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_INVERSION:+:-:[43844],CANX->calnexin,chr5:179105629-179157926:+,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	COMMD2--KIAA0408	2	0	COMMD2	2822	chr3:149468465:-	KIAA0408	17935	chr6:127765427:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	COMMD2->COMM_domain_containing_2,chr3:149456257-149470286:-,KIAA0408->KIAA0408,chr6:127761488-127780536:-	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	CTD-2006C1.2--DNMT1	2	0	CTD-2006C1.2	3469	chr19:12112637:+	DNMT1	25217	chr19:10292753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CTD-2006C1.2->chr19:12098432-12157090:+,DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	DANCR--NME7	2	0	DANCR	1530	chr4:53579126:+	NME7	21292	chr1:169206925:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	EIF3D--GON4L	2	0	EIF3D	6391	chr22:36919256:-	GON4L	31207	chr1:155774932:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,GON4L->chr1:155719508-155829191:-,gon-4_like	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	IFT122--EPHB1	1	4	IFT122	29605	chr3:129225392:+	EPHB1	60091	chr3:134825290:+	ONLY_REF_SPLICE	YES	105	5	0.05	0.5	0.0122	0.049	IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122,EPHB1->ArcherDX_panel,EPH_receptor_B1,FoundationOne_panel,chr3:134316643-134979309:+	NCIH526_LUNG	0.05	0.5	0.0612	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	LPAR5--PEMT	2	0	LPAR5	1541	chr12:6745073:-	PEMT	21236	chr17:17409615:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	LPAR5->chr12:6728001-6745613:-,lysophosphatidic_acid_receptor_5,PEMT->chr17:17408877-17495022:-,phosphatidylethanolamine_N-methyltransferase	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	RCC1--ACLY	2	0	RCC1	2920	chr1:28835417:+	ACLY	43457	chr17:40028435:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ACLY->ATP_citrate_lyase,chr17:40023161-40086795:-	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	SAR1A--HSPA14	2	0	SAR1A	1111	chr10:71930169:-	HSPA14	32862	chr10:14909082:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A,HSPA14->chr10:14880163-14913740:+,heat_shock_protein_family_A_(Hsp70)_member_14	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	TANC1--LUC7L2	2	0	TANC1	26696	chr2:160075872:+	LUC7L2	41915	chr7:139060808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	TNIK--A4GNT	2	0	TNIK	8225	chr3:170912314:-	A4GNT	47606	chr3:137843720:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	TNIK->TRAF2_and_NCK_interacting_kinase,chr3:170779128-171178197:-,A4GNT->alpha-1,4-N-acetylglucosaminyltransferase,chr3:137842560-137851229:-	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	VWDE--PHF14	2	0	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH526_LUNG	1	1	0.0245	TRUE	0	6	0	17	2	TRUE	ACH-000767
NCIH526_LUNG	FBXO42--CROCCP3	1	3	FBXO42	3584	chr1:16632298:-	CROCCP3	25204	chr1:16813156:-	ONLY_REF_SPLICE	YES	59	19	0.06	0.17	0.0122	0.0367	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,CROCCP3->chr1:16793931-16825752:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_3	NCIH526_LUNG	0.06	0.17	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	SIL1--DNAJC18	1	3	SIL1	18569	chr5:138386627:-	DNAJC18	36219	chr5:138764372:-	ONLY_REF_SPLICE	YES	8	38	0.33	0.1	0.0122	0.0367	SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,DNAJC18->DnaJ_heat_shock_protein_family_(Hsp40)_member_C18,chr5:138744279-138780180:-	NCIH526_LUNG	0.1	0.33	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	ITGA6--AC104801.1	1	2	ITGA6	10913	chr2:173341241:+	AC104801.1	31017	chr2:172973630:+	ONLY_REF_SPLICE	NO	38	1	0.07	0.75	0.0122	0.0245	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,AC104801.1->chr2:172967734-172974710:+	NCIH526_LUNG	0.07	0.75	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	RIMS2--KB-1507C5.2	1	2	RIMS2	1315	chr8:104513290:+	KB-1507C5.2	66544	chr8:103989815:+	ONLY_REF_SPLICE	YES	17	1	0.15	0.75	0.0122	0.0245	RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2,KB-1507C5.2->chr8:103876528-103990104:+	NCIH526_LUNG	0.15	0.75	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000767
HCC1500_BREAST	SLC9A7--ALDH7A1	363	110	SLC9A7	16424	chrX:46472724:-	ALDH7A1	41370	chr5:125885985:-	ONLY_REF_SPLICE	YES	0	148	1	0.76	2.8737	0.8708	{Klijn_CCL:Breast=1},SLC9A7->chrX:46464753-46618490:-,solute_carrier_family_9_member_A7,ALDH7A1->aldehyde_dehydrogenase_7_family_member_A1,chr5:125877533-125931110:-	HCC1500_BREAST	0.76	1	3.7445	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	RP11-680G10.1--COX4I1	27	4	RP11-680G10.1	1181	chr16:85391249:+	COX4I1	7563	chr16:85834811:+	ONLY_REF_SPLICE	YES	0	566	1	0.05	0.2137	0.0317	RP11-680G10.1->chr16:85391069-85393055:+,COX4I1->chr16:85832239-85840650:+,cytochrome_c_oxidase_subunit_4I1	HCC1500_BREAST	0.05	1	0.2454	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	ARMC4P1--RP11-748L13.2	17	4	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1346	0.0317	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	HCC1500_BREAST	1	1	0.1663	TRUE	1	34	11	8	34	TRUE	ACH-000349
HCC1500_BREAST	NT5C3A--CHSY1	10	3	NT5C3A	13233	chr7:33055282:-	CHSY1	25817	chr15:101719185:-	ONLY_REF_SPLICE	YES	109	18	0.11	0.42	0.0792	0.0237	NT5C3A->5'-nucleotidase,_cytosolic_IIIA,chr7:33053742-33102409:-,CHSY1->chondroitin_sulfate_synthase_1,chr15:101715928-101792137:-	HCC1500_BREAST	0.11	0.42	0.1029	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	SPIDR--RP3-511B24.6	7	1	SPIDR	28232	chr8:48614577:+	RP3-511B24.6	43259	chr20:39825317:+	ONLY_REF_SPLICE	YES	69	1	0.1	0.89	0.0554	0.0079	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,RP3-511B24.6->chr20:39809096-39825427:+	HCC1500_BREAST	0.1	0.89	0.0633	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	CTD-3116E22.6--ZNF274	7	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	HCC1500_BREAST	1	1	0.0554	TRUE	0	0	0	13	0	TRUE	ACH-000349
HCC1500_BREAST	IFT140--ERN1	6	2	IFT140	14218	chr16:1630760:-	ERN1	51337	chr17:62135353:-	ONLY_REF_SPLICE	YES	25	3	0.24	0.73	0.0475	0.0158	IFT140->chr16:1560428-1662111:-,intraflagellar_transport_140,ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1	HCC1500_BREAST	0.24	0.73	0.0633	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	AL035610.2--AP001604.3	3	1	AL035610.2	7972	chr21:29535921:-	AP001604.3	16956	chr21:28771893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0.0079	AL035610.2->chr21:29488413-29600986:-,AP001604.3->chr21:28731204-28820898:-	HCC1500_BREAST	1	1	0.0316	TRUE	0	2	0	3	2	TRUE	ACH-000349
HCC1500_BREAST	ARPC5L--RAD51	2	0	ARPC5L	7754	chr9:127637430:+	RAD51	17641	chr15:40998375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	ARPC5L->actin_related_protein_2/3_complex_subunit_5-like,chr9:127624409-127640003:+,RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+	HCC1500_BREAST	1	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	ATF6B--SHKBP1	2	0	ATF6B	4790	chr6:32088548:-	SHKBP1	22359	chr19:41092680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,SHKBP1->SH3KBP1_binding_protein_1,chr19:41082757-41097305:+	HCC1500_BREAST	1	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	FADS2--TMEM258	2	0	FADS2	1049	chr11:61560500:+	TMEM258	29821	chr11:61558074:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[178],FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,TMEM258->chr11:61535973-61560274:-,transmembrane_protein_258	HCC1500_BREAST	1	1	0.0158	TRUE	0	2	0	5	2	TRUE	ACH-000349
HCC1500_BREAST	RP11-30J20.1--EIF3H	2	0	RP11-30J20.1	2293	chr8:137549302:+	EIF3H	28030	chr8:117671219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	RP11-30J20.1->chr8:137543041-137997178:+,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	HCC1500_BREAST	1	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	RP11-89K10.1--PCAT1	2	0	RP11-89K10.1	2156	chr8:127601535:+	PCAT1	14438	chr8:127889917:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	RP11-89K10.1->chr8:127570120-127725660:+,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	HCC1500_BREAST	1	1	0.0158	TRUE	0	4	0	4	4	TRUE	ACH-000349
HCC1500_BREAST	UQCC1--FER1L4	2	0	UQCC1	4118	chr20:33981895:-	FER1L4	44269	chr20:34153143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,FER1L4->chr20:34146507-34195484:-,fer-1_like_family_member_4,_pseudogene	HCC1500_BREAST	1	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	FGD4--MRGPRG-AS1	1	1	FGD4	1431	chr12:32552893:+	MRGPRG-AS1	40721	chr11:3242800:+	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0079	0.0079	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,MRGPRG-AS1->MRGPRG_antisense_RNA_1,chr11:3239562-3244361:+	HCC1500_BREAST	0.14	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000349
DV90_LUNG	PLCE1--CYP2C19	77	29	PLCE1	7747	chr10:95931253:+	CYP2C19	57874	chr10:96540256:+	ONLY_REF_SPLICE	YES	13	2	0.89	0.98	0.7405	0.2789	PLCE1->chr10:95753746-96092580:+,phospholipase_C_epsilon_1,CYP2C19->chr10:96447911-96613017:+,cytochrome_P450_family_2_subfamily_C_member_19	DV90_LUNG	0.89	0.98	1.0194	TRUE	0	0	0	1	0	TRUE	ACH-000925
DV90_LUNG	METTL2A--EFCAB3	48	14	METTL2A	3850	chr17:60505198:+	EFCAB3	23877	chr17:60483841:+	ONLY_REF_SPLICE	YES	81	0	0.43	1	0.4616	0.1346	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[7391],METTL2A->chr17:60501228-60527454:+,methyltransferase_like_2A,EFCAB3->EF-hand_calcium_binding_domain_3,chr17:60447579-60493837:+	DV90_LUNG	0.43	1	0.5962	TRUE	0	0	0	1	0	TRUE	ACH-000925
DV90_LUNG	IMMP2L--DOCK4	18	2	IMMP2L	4976	chr7:111127294:-	DOCK4	37048	chr7:111517242:-	ONLY_REF_SPLICE	YES	24	6	0.45	0.77	0.1731	0.0192	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	DV90_LUNG	0.45	0.77	0.1923	TRUE	0	1	0	1	1	TRUE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	3	36	AP003900.6	3299	chr21:11174002:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	8	0	0.83	1	0.0289	0.3462	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.83	1	0.3751	TRUE	0	0	0	3	0	TRUE	ACH-000925
DV90_LUNG	CD2AP--RP11-157D6.1	8	3	CD2AP	2621	chr6:47471176:+	RP11-157D6.1	27196	chr6:47336760:+	INCL_NON_REF_SPLICE	YES	133	0	0.08	1	0.0769	0.0289	CD2AP->CD2-associated_protein,chr6:47445525-47594999:+,RP11-157D6.1->chr6:47336679-47336966:+	DV90_LUNG	0.08	1	0.1058	TRUE	0	0	0	1	0	TRUE	ACH-000925
DV90_LUNG	LST3--PDE3A	7	2	LST3	5989	chr12:21015788:+	PDE3A	31164	chr12:20709594:+	ONLY_REF_SPLICE	YES	98	2	0.08	0.82	0.0673	0.0192	LST3->chr12:20968608-21243179:+,PDE3A->chr12:20522179-20837315:+,phosphodiesterase_3A	DV90_LUNG	0.08	0.82	0.0865	TRUE	0	0	0	1	0	TRUE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	4	11	AP003900.6	1122	chr21:11169841:+	AC011718.2	10100	chr22:20656924:-	INCL_NON_REF_SPLICE	YES	8	0	0.65	1	0.0385	0.1058	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.65	1	0.1443	TRUE	0	0	0	11	0	TRUE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	3	11	AP003900.6	1122	chr21:11169841:+	AC011718.2	10127	chr22:20656897:-	INCL_NON_REF_SPLICE	YES	8	0	0.64	1	0.0289	0.1058	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.64	1	0.1347	TRUE	0	0	0	11	0	TRUE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	2	6	AP003900.6	2187	chr21:11172043:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	13	0	0.38	1	0.0192	0.0577	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.38	1	0.0769	TRUE	0	0	0	5	0	TRUE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	2	4	AP003900.6	2187	chr21:11172043:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	13	7	0.32	0.46	0.0192	0.0385	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.32	0.46	0.0577	TRUE	0	0	0	4	0	TRUE	ACH-000925
DV90_LUNG	C17orf76-AS1--DOCK1	2	0	C17orf76-AS1	1593	chr17:16342728:+	DOCK1	14358	chr10:128768966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	C17orf76-AS1->chr17:16342136-16381992:+,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	DV90_LUNG	1	1	0.0192	TRUE	0	3	0	2	1	TRUE	ACH-000925
DV90_LUNG	EDF1--ABCA2	2	0	EDF1	3072	chr9:139757358:-	ABCA2	8701	chr9:139918688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,ABCA2->ATP_binding_cassette_subfamily_A_member_2,chr9:139901686-139923367:-	DV90_LUNG	1	1	0.0192	TRUE	0	0	0	2	0	TRUE	ACH-000925
DV90_LUNG	GPRIN3--PAPSS1	2	0	GPRIN3	1396	chr4:90228766:-	PAPSS1	22871	chr4:108622441:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	GPRIN3->GPRIN_family_member_3,chr4:90157537-90229161:-,PAPSS1->3'-phosphoadenosine_5'-phosphosulfate_synthase_1,chr4:108511433-108641608:-	DV90_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000925
DV90_LUNG	SERINC2--SHANK3	2	0	SERINC2	11260	chr1:31902385:+	SHANK3	22804	chr22:51123013:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	SERINC2->chr1:31882412-31907525:+,serine_incorporator_2,SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+	DV90_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000925
DV90_LUNG	VRK2--FBXO3	2	0	VRK2	16257	chr2:58316858:+	FBXO3	48725	chr11:33763630:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2,FBXO3->F-box_protein_3,chr11:33762485-33796089:-	DV90_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000925
NCIH596_LUNG	DDX27--EIF6	229	47	DDX27	1195	chr20:47836078:+	EIF6	23743	chr20:33867921:-	ONLY_REF_SPLICE	YES	105	732	0.72	0.27	2.15	0.4413	{Klijn_CCL:Lung=1},DDX27->DEAD-box_helicase_27,chr20:47835884-47860614:+,EIF6->chr20:33866714-33872788:-,eukaryotic_translation_initiation_factor_6	NCIH596_LUNG	0.27	0.72	2.5913	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	STAU1--TYW1	107	39	STAU1	1252	chr20:47804653:-	TYW1	38206	chr7:66648113:+	ONLY_REF_SPLICE	YES	200	13	0.42	0.92	1.0046	0.3662	STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	NCIH596_LUNG	0.42	0.92	1.3708	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	RCOR1--PPM1E	96	41	RCOR1	3802	chr14:103167667:+	PPM1E	24204	chr17:57049493:+	ONLY_REF_SPLICE	YES	11	0	0.93	1	0.9013	0.3849	{Klijn_CCL:Lung=1},RCOR1->REST_corepressor_1,chr14:103058998-103196913:+,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	NCIH596_LUNG	0.93	1	1.2862	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	ADAM15--ZBTB7B	44	35	ADAM15	9222	chr1:155031263:+	ZBTB7B	17391	chr1:154982734:+	ONLY_REF_SPLICE	YES	108	138	0.42	0.36	0.4131	0.3286	LOCAL_REARRANGEMENT:+:[32044],ADAM15->ADAM_metallopeptidase_domain_15,chr1:155023042-155035252:+,ZBTB7B->chr1:154975127-154990998:+,zinc_finger_and_BTB_domain_containing_7B	NCIH596_LUNG	0.36	0.42	0.7417	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	ADAM15--ZBTB7B	41	27	ADAM15	9222	chr1:155031263:+	ZBTB7B	19789	chr1:154987131:+	ONLY_REF_SPLICE	YES	108	149	0.39	0.31	0.3849	0.2535	LOCAL_REARRANGEMENT:+:[32044],ADAM15->ADAM_metallopeptidase_domain_15,chr1:155023042-155035252:+,ZBTB7B->chr1:154975127-154990998:+,zinc_finger_and_BTB_domain_containing_7B	NCIH596_LUNG	0.31	0.39	0.6384	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	LRP6--DUSP16	28	10	LRP6	3924	chr12:12356137:-	DUSP16	42482	chr12:12653616:-	ONLY_REF_SPLICE	YES	5	29	0.88	0.57	0.2629	0.0939	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,DUSP16->chr12:12628829-12715317:-,dual_specificity_phosphatase_16	NCIH596_LUNG	0.57	0.88	0.3568	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	HIST2H2BC--OTUD7B	24	4	HIST2H2BC	1131	chr1:149822209:-	OTUD7B	5810	chr1:149949511:-	INCL_NON_REF_SPLICE	YES	63	14	0.31	0.67	0.2253	0.0376	LOCAL_REARRANGEMENT:-:[87366],HIST2H2BC->chr1:149821760-149822339:-,histone_cluster_2,_H2bc_(pseudogene),OTUD7B->OTU_deubiquitinase_7B,chr1:149909705-149982625:-	NCIH596_LUNG	0.31	0.67	0.2629	TRUE	0	0	0	2	0	TRUE	ACH-000628
NCIH596_LUNG	CARS--OSBPL5	18	19	CARS	18977	chr11:3033425:-	OSBPL5	36298	chr11:3150399:-	ONLY_REF_SPLICE	YES	166	4	0.18	0.9	0.169	0.1784	LOCAL_REARRANGEMENT:-:[29503],CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase,OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5	NCIH596_LUNG	0.18	0.9	0.3474	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	DDX27--EIF6	2	47	DDX27	1195	chr20:47836078:+	EIF6	23032	chr20:33868632:-	ONLY_REF_SPLICE	NO	105	1032	0.32	0.05	0.0188	0.4413	{Klijn_CCL:Lung=1},DDX27->DEAD-box_helicase_27,chr20:47835884-47860614:+,EIF6->chr20:33866714-33872788:-,eukaryotic_translation_initiation_factor_6	NCIH596_LUNG	0.05	0.32	0.4601	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	ADAM15--ZBTB7B	4	29	ADAM15	9222	chr1:155031263:+	ZBTB7B	19149	chr1:154986491:+	ONLY_REF_SPLICE	YES	108	142	0.23	0.19	0.0376	0.2723	LOCAL_REARRANGEMENT:+:[32044],ADAM15->ADAM_metallopeptidase_domain_15,chr1:155023042-155035252:+,ZBTB7B->chr1:154975127-154990998:+,zinc_finger_and_BTB_domain_containing_7B	NCIH596_LUNG	0.19	0.23	0.3099	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	EDEM2--STAU1	8	2	EDEM2	2221	chr20:33859808:-	STAU1	24494	chr20:47790806:-	ONLY_REF_SPLICE	YES	1	205	0.91	0.05	0.0751	0.0188	EDEM2->ER_degradation_enhancing_alpha-mannosidase_like_protein_2,chr20:33703167-33865928:-,STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1	NCIH596_LUNG	0.05	0.91	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	CXADR--C21orf37	7	2	CXADR	8278	chr21:18937929:+	C21orf37	19471	chr21:18816401:+	ONLY_REF_SPLICE	YES	84	0	0.1	1	0.0657	0.0188	LOCAL_REARRANGEMENT:+:[63197],CXADR->chr21:18884700-18965897:+,coxsackie_virus_and_adenovirus_receptor,C21orf37->chr21:18811208-18821503:+	NCIH596_LUNG	0.1	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	DUSP1--IGFBP3	6	0	DUSP1	3369	chr5:172195830:-	IGFBP3	13711	chr7:45953060:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	DUSP1->chr5:172195093-172198198:-,dual_specificity_phosphatase_1,IGFBP3->Oncogene{Bushman},chr7:45951949-45961473:-,insulin_like_growth_factor_binding_protein_3	NCIH596_LUNG	1	1	0.0563	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	EMC2--EIF3E	4	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0376	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH596_LUNG	1	1	0.0376	TRUE	0	0	0	12	0	TRUE	ACH-000628
NCIH596_LUNG	CXADR--C21orf37	3	1	CXADR	8278	chr21:18937929:+	C21orf37	20589	chr21:18821183:+	ONLY_REF_SPLICE	YES	84	0	0.05	1	0.0282	0.0094	LOCAL_REARRANGEMENT:+:[63197],CXADR->chr21:18884700-18965897:+,coxsackie_virus_and_adenovirus_receptor,C21orf37->chr21:18811208-18821503:+	NCIH596_LUNG	0.05	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	NECAB3--RP4-553F4.6	3	1	NECAB3	5047	chr20:32257181:-	RP4-553F4.6	18532	chr20:32383422:-	ONLY_REF_SPLICE	YES	91	0	0.04	1	0.0282	0.0094	NECAB3->N-terminal_EF-hand_calcium_binding_protein_3,chr20:32244893-32262269:-,RP4-553F4.6->chr20:32375179-32398903:-	NCIH596_LUNG	0.04	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	LRP6--DUSP16	2	2	LRP6	3924	chr12:12356137:-	DUSP16	43646	chr12:12640121:-	ONLY_REF_SPLICE	YES	5	19	0.44	0.17	0.0188	0.0188	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,DUSP16->chr12:12628829-12715317:-,dual_specificity_phosphatase_16	NCIH596_LUNG	0.17	0.44	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	ALDH1A3--CHSY1	2	0	ALDH1A3	2783	chr15:101420211:+	CHSY1	25161	chr15:101775782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ALDH1A3->aldehyde_dehydrogenase_1_family_member_A3,chr15:101417919-101456831:+,CHSY1->chondroitin_sulfate_synthase_1,chr15:101715928-101792137:-	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	ANXA2--NARG2	2	0	ANXA2	2915	chr15:60690142:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	3	0	TRUE	ACH-000628
NCIH596_LUNG	ARHGAP23--RP11-894J14.5	2	0	ARHGAP23	1131	chr17:36584792:+	RP11-894J14.5	37713	chr3:53077270:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,RP11-894J14.5->chr3:53003135-53133469:-	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	FOXO1--TGIF1	2	0	FOXO1	2015	chr13:41239720:-	TGIF1	24404	chr18:3456352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	KIF22--ZNF638	2	0	KIF22	1111	chr16:29802150:+	ZNF638	22078	chr2:71582849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	KIF22->chr16:29802040-29816706:+,kinesin_family_member_22,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	MNT--CTBP1	2	0	MNT	1479	chr17:2303934:-	CTBP1	21303	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	MNT->MAX_network_transcriptional_repressor,chr17:2287354-2304412:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	PRKCH--HIF1A	2	0	PRKCH	27174	chr14:61952374:+	HIF1A	45882	chr14:62187100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	NCIH596_LUNG	1	1	0.0188	TRUE	0	3	0	5	0	TRUE	ACH-000628
NCIH596_LUNG	PYROXD2--KCNMA1	2	0	PYROXD2	5918	chr10:100167339:-	KCNMA1	58903	chr10:78674807:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	PYROXD2->chr10:100143322-100174941:-,pyridine_nucleotide-disulphide_oxidoreductase_domain_2,KCNMA1->chr10:78629359-79398353:-,potassium_calcium-activated_channel_subfamily_M_alpha_1	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	RCOR1--PPM1E	1	4	RCOR1	3802	chr14:103167667:+	PPM1E	25998	chr17:57057335:+	ONLY_REF_SPLICE	YES	11	29	0.31	0.15	0.0094	0.0376	{Klijn_CCL:Lung=1},RCOR1->REST_corepressor_1,chr14:103058998-103196913:+,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	NCIH596_LUNG	0.15	0.31	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	APOBEC3F--SLC25A18	1	1	APOBEC3F	4980	chr22:39441547:+	SLC25A18	14943	chr22:18062511:+	ONLY_REF_SPLICE	NO	17	0	0.11	1	0.0094	0.0094	APOBEC3F->apolipoprotein_B_mRNA_editing_enzyme_catalytic_subunit_3F,chr22:39436609-39449915:+,SLC25A18->chr22:18043139-18073760:+,solute_carrier_family_25_member_18	NCIH596_LUNG	0.11	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
U2OS_BONE	PALLD--ANXA10	1025	249	PALLD	9116	chr4:169589519:+	ANXA10	47995	chr4:169098891:+	ONLY_REF_SPLICE	YES	249	1	0.84	1	13.3332	3.239	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PALLD->chr4:169418217-169849608:+,palladin,_cytoskeletal_associated_protein,ANXA10->annexin_A10,chr4:169013666-169108841:+	U2OS_BONE	0.84	1	16.5722	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RPS29--POLE2	74	3	RPS29	2383	chr14:50053003:-	POLE2	10944	chr14:50150411:-	ONLY_REF_SPLICE	YES	97	4	0.44	0.95	0.9626	0.039	{Klijn_CCL:Sarcomatoid=1},LOCAL_REARRANGEMENT:-:[44865],RPS29->chr14:50043390-50065408:-,ribosomal_protein_S29,POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit	U2OS_BONE	0.44	0.95	1.0016	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	ENOSF1--DLGAP1	53	16	ENOSF1	9574	chr18:688574:-	DLGAP1	30441	chr18:4005201:-	ONLY_REF_SPLICE	YES	32	0	0.68	1	0.6894	0.2081	ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	U2OS_BONE	0.68	1	0.8975	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RPS29--POLE2	39	35	RPS29	2718	chr14:50052668:-	POLE2	10944	chr14:50150411:-	ONLY_REF_SPLICE	YES	378	4	0.16	0.95	0.5073	0.4553	{Klijn_CCL:Sarcomatoid=1},LOCAL_REARRANGEMENT:-:[44865],RPS29->chr14:50043390-50065408:-,ribosomal_protein_S29,POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit	U2OS_BONE	0.16	0.95	0.9626	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	TANC2--CHRNA4	23	14	TANC2	16051	chr17:61345234:+	CHRNA4	62293	chr20:61982379:-	ONLY_REF_SPLICE	YES	24	2	0.61	0.95	0.2992	0.1821	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CHRNA4->cholinergic_receptor_nicotinic_alpha_4_subunit,chr20:61975420-62009753:-	U2OS_BONE	0.61	0.95	0.4813	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	PALLD--ANXA10	8	50	PALLD	5744	chr4:169553051:+	ANXA10	47995	chr4:169098891:+	ONLY_REF_SPLICE	YES	342	1	0.14	0.98	0.1041	0.6504	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PALLD->chr4:169418217-169849608:+,palladin,_cytoskeletal_associated_protein,ANXA10->annexin_A10,chr4:169013666-169108841:+	U2OS_BONE	0.14	0.98	0.7545	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	TBL1XR1--CTD-2611K5.5	14	3	TBL1XR1	1353	chr3:176914909:-	CTD-2611K5.5	34282	chr15:102320319:-	ONLY_REF_SPLICE	YES	7	0	0.71	1	0.1821	0.039	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,CTD-2611K5.5->chr15:102311961-102322192:-	U2OS_BONE	0.71	1	0.2211	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	TBL1XR1--CTD-2611K5.5	8	8	TBL1XR1	3252	chr3:176878659:-	CTD-2611K5.5	34282	chr15:102320319:-	ONLY_REF_SPLICE	YES	11	0	0.59	1	0.1041	0.1041	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,CTD-2611K5.5->chr15:102311961-102322192:-	U2OS_BONE	0.59	1	0.2082	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RPS29--POLE2	1	21	RPS29	2718	chr14:50052668:-	POLE2	12045	chr14:50146518:-	ONLY_REF_SPLICE	YES	378	97	0.06	0.18	0.013	0.2732	{Klijn_CCL:Sarcomatoid=1},LOCAL_REARRANGEMENT:-:[44865],RPS29->chr14:50043390-50065408:-,ribosomal_protein_S29,POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit	U2OS_BONE	0.06	0.18	0.2862	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RAB27A--CCPG1	5	3	RAB27A	2305	chr15:55606237:-	CCPG1	34410	chr15:55653142:-	ONLY_REF_SPLICE	YES	2	18	0.8	0.31	0.065	0.039	LOCAL_REARRANGEMENT:-:[20919],RAB27A->RAB27A,_member_RAS_oncogene_family,chr15:55495164-55611311:-,CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-	U2OS_BONE	0.31	0.8	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	YTHDF1--CDH4	5	1	YTHDF1	2738	chr20:61845216:-	CDH4	19899	chr20:60448784:+	ONLY_REF_SPLICE	YES	127	34	0.05	0.15	0.065	0.013	YTHDF1->YTH_N6-methyladenosine_RNA_binding_protein_1,chr20:61826781-61847586:-,CDH4->cadherin_4,chr20:59827482-60515673:+	U2OS_BONE	0.05	0.15	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	AP003900.6--RP11-435B5.4	5	0	AP003900.6	1122	chr21:11169841:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	U2OS_BONE	1	1	0.065	TRUE	1	3	0	6	3	TRUE	ACH-000364
U2OS_BONE	PTPN2--PSMG2	5	0	PTPN2	2411	chr18:12884072:-	PSMG2	30786	chr18:12706549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	LOCAL_INVERSION:-:+:[59738],PTPN2->chr18:12785477-12929642:-,protein_tyrosine_phosphatase,_non-receptor_type_2,PSMG2->chr18:12658737-12725739:+,proteasome_assembly_chaperone_2	U2OS_BONE	1	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RAD50--ZNF536	5	0	RAD50	3519	chr5:131895059:+	ZNF536	35026	chr19:30787062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	RAD50->ArcherDX_panel,FoundationOne_panel,RAD50_double_strand_break_repair_protein,chr5:131891711-131980313:+,ZNF536->chr19:30719197-31204445:+,zinc_finger_protein_536	U2OS_BONE	1	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	DOCK1--SH2D5	4	2	DOCK1	1155	chr10:128594132:+	SH2D5	67584	chr1:21051128:-	ONLY_REF_SPLICE	YES	40	16	0.13	0.27	0.052	0.026	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,SH2D5->SH2_domain_containing_5,chr1:21046225-21059330:-	U2OS_BONE	0.13	0.27	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	NUP188--PHYHD1	3	3	NUP188	7453	chr9:131721413:+	PHYHD1	39828	chr9:131689317:+	ONLY_REF_SPLICE	YES	70	2	0.08	0.75	0.039	0.039	{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[5658],NUP188->chr9:131709978-131769375:+,nucleoporin_188kDa,PHYHD1->chr9:131683174-131704320:+,phytanoyl-CoA_dioxygenase_domain_containing_1	U2OS_BONE	0.08	0.75	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	DOCK1--SH2D5	3	2	DOCK1	1155	chr10:128594132:+	SH2D5	65428	chr1:21053568:-	ONLY_REF_SPLICE	YES	40	9	0.11	0.36	0.039	0.026	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,SH2D5->SH2_domain_containing_5,chr1:21046225-21059330:-	U2OS_BONE	0.11	0.36	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	GPC6--GPC5	3	1	GPC6	1775	chr13:93879869:+	GPC5	27371	chr13:92797083:+	ONLY_REF_SPLICE	YES	60	0	0.06	1	0.039	0.013	HGNC_GENEFAM,PROTCLUST,YOSHIHARA_TCGA_num_samples[HNSC:1|KIRC:1],GPC6->chr13:93879095-95059655:+,glypican_6,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	U2OS_BONE	0.06	1	0.052	TRUE	0	1	0	1	1	TRUE	ACH-000364
U2OS_BONE	RC3H1--RP11-160H22.5	3	1	RC3H1	1202	chr1:173991234:-	RP11-160H22.5	36278	chr1:174084787:-	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.039	0.013	LOCAL_REARRANGEMENT:-:[93003],RC3H1->chr1:173900352-173991435:-,ring_finger_and_CCCH-type_domains_1,RP11-160H22.5->chr1:174084438-174129142:-	U2OS_BONE	0.4	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	DNM1L--FGD4	3	0	DNM1L	2936	chr12:32854496:+	FGD4	46589	chr12:32760891:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	LOCAL_REARRANGEMENT:+:[33150],DNM1L->chr12:32832134-32898486:+,dynamin_1-like,FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+	U2OS_BONE	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	HMGA2--CHMP1A	3	0	HMGA2	3338	chr12:66221867:+	CHMP1A	31922	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},{Klijn_CCL:Lung=1},HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	U2OS_BONE	1	1	0.039	TRUE	0	1	0	2	0	TRUE	ACH-000364
U2OS_BONE	NEDD4--PRICKLE1	3	0	NEDD4	9605	chr15:56216844:-	PRICKLE1	44240	chr12:42866366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	NEDD4->chr15:56119120-56285944:-,neural_precursor_cell_expressed,_developmentally_down-regulated_4,_E3_ubiquitin_protein_ligase,PRICKLE1->chr12:42852140-42984157:-,prickle_planar_cell_polarity_protein_1	U2OS_BONE	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	TBL1XR1--CTD-2611K5.5	2	4	TBL1XR1	2134	chr3:176914128:-	CTD-2611K5.5	34282	chr15:102320319:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.026	0.052	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,CTD-2611K5.5->chr15:102311961-102322192:-	U2OS_BONE	0.46	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	CEP85L--PRIM2	2	3	CEP85L	8480	chr6:118953616:-	PRIM2	51097	chr6:57512472:+	ONLY_REF_SPLICE	YES	1	127	0.83	0.04	0.026	0.039	CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	U2OS_BONE	0.04	0.83	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	STK3--RP11-100L22.2	2	3	STK3	24069	chr8:99608260:-	RP11-100L22.2	39983	chr8:93798288:-	ONLY_REF_SPLICE	YES	40	0	0.11	1	0.026	0.039	STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,RP11-100L22.2->chr8:93711970-93889865:-	U2OS_BONE	0.11	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	AC002055.4--RAB3B	2	2	AC002055.4	4453	chr22:51223721:+	RAB3B	15154	chr1:52403084:-	ONLY_REF_SPLICE	YES	87	9	0.04	0.31	0.026	0.026	AC002055.4->chr22:51195376-51239737:+,RAB3B->RAB3B,_member_RAS_oncogene_family,chr1:52373628-52456436:-	U2OS_BONE	0.04	0.31	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	DOCK1--SH2D5	1	6	DOCK1	1155	chr10:128594132:+	SH2D5	64417	chr1:21054579:-	ONLY_REF_SPLICE	YES	40	6	0.15	0.54	0.013	0.078	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,SH2D5->SH2_domain_containing_5,chr1:21046225-21059330:-	U2OS_BONE	0.15	0.54	0.091	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	AC002055.4--RAB3B	2	1	AC002055.4	1379	chr22:51195754:+	RAB3B	15154	chr1:52403084:-	ONLY_REF_SPLICE	YES	0	9	1	0.25	0.026	0.013	AC002055.4->chr22:51195376-51239737:+,RAB3B->RAB3B,_member_RAS_oncogene_family,chr1:52373628-52456436:-	U2OS_BONE	0.25	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RP11-444D3.1--CASC1	2	1	RP11-444D3.1	1258	chr12:24715267:-	CASC1	18455	chr12:25311497:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.026	0.013	RP11-444D3.1->chr12:24366190-24715524:-,CASC1->cancer_susceptibility_candidate_1,chr12:25261354-25348096:-	U2OS_BONE	0.43	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	CHD8--PTTG1	2	0	CHD8	9216	chr14:21894287:-	PTTG1	36163	chr5:159849309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	U2OS_BONE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	HMGA2--LUM	2	0	HMGA2	5315	chr12:66232349:+	LUM	30462	chr12:91498096:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	U2OS_BONE	1	1	0.026	TRUE	0	0	0	8	0	TRUE	ACH-000364
U2OS_BONE	RCC1--MKI67	2	0	RCC1	2175	chr1:28834672:+	MKI67	21977	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	U2OS_BONE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	SEH1L--ZSCAN12P1	2	0	SEH1L	3705	chr18:12951904:+	ZSCAN12P1	25844	chr6:28060117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	SEH1L->SEH1_like_nucleoporin,chr18:12947132-12987535:+,ZSCAN12P1->chr6:28058932-28061442:+,zinc_finger_and_SCAN_domain_containing_12_pseudogene_1	U2OS_BONE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RP11-444D3.1--CASC1	1	3	RP11-444D3.1	1258	chr12:24715267:-	CASC1	17160	chr12:25314131:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.013	0.039	RP11-444D3.1->chr12:24366190-24715524:-,CASC1->cancer_susceptibility_candidate_1,chr12:25261354-25348096:-	U2OS_BONE	0.5	1	0.052	TRUE	0	1	0	1	1	TRUE	ACH-000364
U2OS_BONE	AC006486.9--NOC4L	1	1	AC006486.9	1155	chr19:42759130:-	NOC4L	13650	chr12:132635803:+	ONLY_REF_SPLICE	YES	1	54	0.67	0.04	0.013	0.013	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},AC006486.9->chr19:42738735-42759284:-,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	U2OS_BONE	0.04	0.67	0.026	TRUE	0	7	0	1	7	TRUE	ACH-000364
U2OS_BONE	RAB27A--CCPG1	1	1	RAB27A	1183	chr15:55611129:-	CCPG1	34410	chr15:55653142:-	ONLY_REF_SPLICE	NO	3	18	0.4	0.1	0.013	0.013	LOCAL_REARRANGEMENT:-:[20919],RAB27A->RAB27A,_member_RAS_oncogene_family,chr15:55495164-55611311:-,CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-	U2OS_BONE	0.1	0.4	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	SPATA6--AGBL4	1	1	SPATA6	15965	chr1:48825258:-	AGBL4	36830	chr1:49128913:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.013	0.013	LOCAL_REARRANGEMENT:-:[60682],SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	U2OS_BONE	0.33	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000364
COLO679_SKIN	BCL2L13--MLC1	44	18	BCL2L13	4107	chr22:18138598:+	MLC1	22478	chr22:50523390:-	ONLY_REF_SPLICE	YES	272	1	0.19	0.98	0.4327	0.177	BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,MLC1->chr22:50497820-50524331:-,megalencephalic_leukoencephalopathy_with_subcortical_cysts_1	COLO679_SKIN	0.19	0.98	0.6097	TRUE	0	0	0	1	0	TRUE	ACH-000805
COLO679_SKIN	AMER1--ARHGEF9	22	14	AMER1	2421	chrX:63413019:-	ARHGEF9	23848	chrX:62898452:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.2163	0.1377	AMER1->APC_membrane_recruitment_protein_1,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:63404997-63425624:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	COLO679_SKIN	0.92	1	0.354	TRUE	0	0	0	1	0	TRUE	ACH-000805
COLO679_SKIN	AMER1--ARHGEF9	9	10	AMER1	1175	chrX:63425450:-	ARHGEF9	23848	chrX:62898452:-	ONLY_REF_SPLICE	YES	9	0	0.68	1	0.0885	0.0983	AMER1->APC_membrane_recruitment_protein_1,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:63404997-63425624:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	COLO679_SKIN	0.68	1	0.1868	TRUE	0	0	0	1	0	TRUE	ACH-000805
COLO679_SKIN	RNF115--IQSEC3	9	2	RNF115	2365	chr1:145646173:+	IQSEC3	25409	chr12:208312:+	ONLY_REF_SPLICE	YES	33	0	0.25	1	0.0885	0.0197	RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,IQSEC3->IQ_motif_and_Sec7_domain_3,chr12:175931-287626:+	COLO679_SKIN	0.25	1	0.1082	TRUE	0	0	0	1	0	TRUE	ACH-000805
COLO679_SKIN	RCC1--GNB1	3	0	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	COLO679_SKIN	1	1	0.0295	TRUE	0	10	0	7	3	TRUE	ACH-000805
COLO679_SKIN	SMYD3--DESI2	2	0	SMYD3	22361	chr1:246091233:-	DESI2	39952	chr1:244868858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,DESI2->chr1:244816237-244872335:+,desumoylating_isopeptidase_2	COLO679_SKIN	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000805
SNU620_STOMACH	TFEB--TRERF1	5706	1638	TFEB	1910	chr6:41703088:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	35	5	1	1	48.971	14.0579	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	1	1	63.0289	TRUE	0	0	0	2	0	TRUE	ACH-000325
SNU620_STOMACH	TFEB--TRERF1	2948	77	TFEB	1114	chr6:41703884:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	0	5	1	1	25.3008	0.6608	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	1	1	25.9616	TRUE	0	0	0	2	0	TRUE	ACH-000325
SNU620_STOMACH	TFEB--TRERF1	1754	2075	TFEB	4611	chr6:41700387:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	39	5	0.99	1	15.0535	17.8084	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	0.99	1	32.8619	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	1364	430	ST7	1454	chr7:116593745:+	ATP6V0A4	43207	chr7:138456009:-	ONLY_REF_SPLICE	YES	44	49	0.98	0.97	11.7063	3.6904	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.97	0.98	15.3967	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--MRPS10	1187	81	RP11-1143G9.4	1489	chr12:69747517:-	MRPS10	10748	chr6:42175206:-	INCL_NON_REF_SPLICE	YES	7598	1733	0.14	0.42	10.1873	0.6952	RP11-1143G9.4->chr12:69747273-69748005:-,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	SNU620_STOMACH	0.14	0.42	10.8825	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	FOXN3--LYZ	1117	1	FOXN3	14521	chr14:89730338:-	LYZ	38331	chr12:69747351:+	INCL_NON_REF_SPLICE	YES	49	15164	0.96	0.07	9.5865	0.0086	FOXN3->chr14:89591215-90085493:-,forkhead_box_N3,LYZ->chr12:69742121-69748014:+,lysozyme	SNU620_STOMACH	0.07	0.96	9.5951	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--RAB11FIP1	588	3	RP11-1143G9.4	1649	chr12:69747357:-	RAB11FIP1	16524	chr8:37717947:-	INCL_NON_REF_SPLICE	YES	26	228	0.96	0.72	5.0464	0.0257	RP11-1143G9.4->chr12:69747273-69748005:-,RAB11FIP1->RAB11_family_interacting_protein_1,chr8:37716136-37756985:-	SNU620_STOMACH	0.72	0.96	5.0721	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	TFEB--TRERF1	60	1665	TFEB	2360	chr6:41702638:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	58	5	0.97	1	0.5149	14.2896	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	0.97	1	14.8045	TRUE	0	0	0	2	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	300	503	ST7	1454	chr7:116593745:+	ATP6V0A4	40872	chr7:138471005:-	ONLY_REF_SPLICE	YES	44	34	0.95	0.96	2.5747	4.3169	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.95	0.96	6.8916	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	TFEB--TRERF1	5	1669	TFEB	3596	chr6:41701402:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	521	5	0.76	1	0.0429	14.324	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	0.76	1	14.3669	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	TFEB--TRERF1	1	1666	TFEB	3175	chr6:41701823:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	138	5	0.92	1	0.0086	14.2982	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	0.92	1	14.3068	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	TFEB--TRERF1	3	1638	TFEB	1910	chr6:41703088:-	TRERF1	37911	chr6:42196405:-	INCL_NON_REF_SPLICE	YES	35	4	0.98	1	0.0257	14.0579	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	0.98	1	14.0836	TRUE	0	0	0	2	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	17	487	ST7	1454	chr7:116593745:+	ATP6V0A4	40884	chr7:138470993:-	INCL_NON_REF_SPLICE	YES	44	37	0.92	0.93	0.1459	4.1796	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.92	0.93	4.3255	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	3	508	ST7	2442	chr7:116594733:+	ATP6V0A4	40872	chr7:138471005:-	ONLY_REF_SPLICE	YES	34	34	0.94	0.94	0.0257	4.3598	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.94	0.94	4.3855	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	2	510	ST7	5015	chr7:116660683:+	ATP6V0A4	40872	chr7:138471005:-	ONLY_REF_SPLICE	YES	34	34	0.94	0.94	0.0172	4.377	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.94	0.94	4.3942	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	2	509	ST7	3569	chr7:116655068:+	ATP6V0A4	40872	chr7:138471005:-	ONLY_REF_SPLICE	YES	34	34	0.94	0.94	0.0172	4.3684	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.94	0.94	4.3856	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	3	433	ST7	3569	chr7:116655068:+	ATP6V0A4	43207	chr7:138456009:-	ONLY_REF_SPLICE	YES	34	49	0.93	0.9	0.0257	3.7162	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.9	0.93	3.7419	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	1	434	ST7	5015	chr7:116660683:+	ATP6V0A4	43207	chr7:138456009:-	ONLY_REF_SPLICE	NO	34	49	0.93	0.9	0.0086	3.7247	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.9	0.93	3.7333	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	AC006159.3--USP49	97	13	AC006159.3	2366	chr7:116240845:-	USP49	15868	chr6:41839375:-	ONLY_REF_SPLICE	YES	3	31	0.97	0.78	0.8325	0.1116	AC006159.3->chr7:116211014-116254874:-,USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49	SNU620_STOMACH	0.78	0.97	0.9441	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	AC092594.1--SVOPL	74	9	AC092594.1	11499	chr2:19203592:-	SVOPL	36587	chr7:138281275:-	ONLY_REF_SPLICE	YES	0	26	1	0.76	0.6351	0.0772	AC092594.1->chr2:19167729-19546509:-,SVOPL->SVOP_like,chr7:138279030-138386097:-	SNU620_STOMACH	0.76	1	0.7123	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	AC006159.3--USP49	63	2	AC006159.3	1222	chr7:116254653:-	USP49	15868	chr6:41839375:-	ONLY_REF_SPLICE	YES	4	31	0.94	0.68	0.5407	0.0172	AC006159.3->chr7:116211014-116254874:-,USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49	SNU620_STOMACH	0.68	0.94	0.5579	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	TMEM213--ST7-AS1	50	19	TMEM213	6862	chr7:138490784:+	ST7-AS1	12459	chr7:116593745:-	INCL_NON_REF_SPLICE	YES	5	2	0.93	0.97	0.4291	0.1631	TMEM213->chr7:138482695-138522846:+,transmembrane_protein_213,ST7-AS1->ST7_antisense_RNA_1,chr7:116592500-116594388:-	SNU620_STOMACH	0.93	0.97	0.5922	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--MRPS10	40	30	RP11-1143G9.4	1655	chr12:69747351:-	MRPS10	10915	chr6:42175039:-	INCL_NON_REF_SPLICE	YES	16	1267	0.81	0.05	0.3433	0.2575	RP11-1143G9.4->chr12:69747273-69748005:-,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	SNU620_STOMACH	0.05	0.81	0.6008	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ZNF236--PIEZO2	38	6	ZNF236	1056	chr18:74534618:+	PIEZO2	45232	chr18:10979658:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3261	0.0515	ZNF236->chr18:74534563-74682683:+,zinc_finger_protein_236,PIEZO2->chr18:10666480-11148587:-,piezo_type_mechanosensitive_ion_channel_component_2	SNU620_STOMACH	1	1	0.3776	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	4	129	ST7	1454	chr7:116593745:+	ATP6V0A4	44341	chr7:138453996:-	ONLY_REF_SPLICE	YES	44	314	0.75	0.3	0.0343	1.1071	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.3	0.75	1.1414	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--RAB11FIP1	26	20	RP11-1143G9.4	1655	chr12:69747351:-	RAB11FIP1	6447	chr8:37735319:-	INCL_NON_REF_SPLICE	YES	17	305	0.73	0.13	0.2231	0.1716	RP11-1143G9.4->chr12:69747273-69748005:-,RAB11FIP1->RAB11_family_interacting_protein_1,chr8:37716136-37756985:-	SNU620_STOMACH	0.13	0.73	0.3947	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	PNCK--LINC01004	18	9	PNCK	3491	chrX:152951956:-	LINC01004	15759	chr7:104594353:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1545	0.0772	PNCK->chrX:152935185-152954465:-,pregnancy_up-regulated_nonubiquitous_CaM_kinase,LINC01004->chr7:104590762-104653491:-,long_intergenic_non-protein_coding_RNA_1004	SNU620_STOMACH	0.96	1	0.2317	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	AC092594.1--SVOPL	13	10	AC092594.1	11499	chr2:19203592:-	SVOPL	35868	chr7:138281994:-	ONLY_REF_SPLICE	YES	0	20	1	0.53	0.1116	0.0858	AC092594.1->chr2:19167729-19546509:-,SVOPL->SVOP_like,chr7:138279030-138386097:-	SNU620_STOMACH	0.53	1	0.1974	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	3	31	ST7	1454	chr7:116593745:+	ATP6V0A4	45813	chr7:138447770:-	ONLY_REF_SPLICE	YES	44	594	0.44	0.05	0.0257	0.2661	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.05	0.44	0.2918	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	PBX3--GLE1	8	0	PBX3	11138	chr9:128697886:+	GLE1	23342	chr9:131277808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0687	0	{Klijn_CCL:Stomach=1},PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	SNU620_STOMACH	1	1	0.0687	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	PNCK--LINC01004	5	9	PNCK	3528	chrX:152951919:-	LINC01004	15759	chr7:104594353:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0429	0.0772	PNCK->chrX:152935185-152954465:-,pregnancy_up-regulated_nonubiquitous_CaM_kinase,LINC01004->chr7:104590762-104653491:-,long_intergenic_non-protein_coding_RNA_1004	SNU620_STOMACH	0.93	1	0.1201	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--RAB11FIP1	3	14	RP11-1143G9.4	1649	chr12:69747357:-	RAB11FIP1	15277	chr8:37719194:-	INCL_NON_REF_SPLICE	YES	26	210	0.4	0.07	0.0257	0.1202	RP11-1143G9.4->chr12:69747273-69748005:-,RAB11FIP1->RAB11_family_interacting_protein_1,chr8:37716136-37756985:-	SNU620_STOMACH	0.07	0.4	0.1459	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	AC006159.3--USP49	4	2	AC006159.3	1222	chr7:116254653:-	USP49	16942	chr6:41774749:-	ONLY_REF_SPLICE	YES	4	35	0.6	0.15	0.0343	0.0172	AC006159.3->chr7:116211014-116254874:-,USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49	SNU620_STOMACH	0.15	0.6	0.0515	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	AC006159.3--USP49	1	13	AC006159.3	2366	chr7:116240845:-	USP49	13336	chr6:41841977:-	ONLY_REF_SPLICE	YES	3	33	0.82	0.3	0.0086	0.1116	AC006159.3->chr7:116211014-116254874:-,USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49	SNU620_STOMACH	0.3	0.82	0.1202	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	GLE1--SCAI	4	1	GLE1	3538	chr9:131277918:+	SCAI	20321	chr9:127904956:-	ONLY_REF_SPLICE	YES	107	13	0.04	0.28	0.0343	0.0086	GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+,SCAI->chr9:127704887-127905785:-,suppressor_of_cancer_cell_invasion	SNU620_STOMACH	0.04	0.28	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	APC--CTC-254B4.1	3	4	APC	1385	chr5:112043579:+	CTC-254B4.1	38572	chr5:106154178:-	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0257	0.0343	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,CTC-254B4.1->chr5:106150898-106346715:-	SNU620_STOMACH	0.78	1	0.06	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	APC--CTC-254B4.1	3	4	APC	1385	chr5:112043579:+	CTC-254B4.1	39651	chr5:106151247:-	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0257	0.0343	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,CTC-254B4.1->chr5:106150898-106346715:-	SNU620_STOMACH	0.78	1	0.06	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	APC--CTC-254B4.1	3	1	APC	1152	chr5:112043346:+	CTC-254B4.1	38572	chr5:106154178:-	ONLY_REF_SPLICE	YES	1	2	0.8	0.67	0.0257	0.0086	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,CTC-254B4.1->chr5:106150898-106346715:-	SNU620_STOMACH	0.67	0.8	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	SDC1--PGC	3	0	SDC1	5676	chr2:20403690:-	PGC	20182	chr6:41705534:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C)	SNU620_STOMACH	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	APC--CTC-254B4.1	1	6	APC	1385	chr5:112043579:+	CTC-254B4.1	37418	chr5:106179915:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0.0515	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,CTC-254B4.1->chr5:106150898-106346715:-	SNU620_STOMACH	1	1	0.0601	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	AC006159.3--USP49	1	5	AC006159.3	2366	chr7:116240845:-	USP49	16942	chr6:41774749:-	ONLY_REF_SPLICE	YES	3	35	0.67	0.15	0.0086	0.0429	AC006159.3->chr7:116211014-116254874:-,USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49	SNU620_STOMACH	0.15	0.67	0.0515	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	COBLL1--BACE2	2	0	COBLL1	11011	chr2:165600197:-	BACE2	58241	chr21:42647298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	COBLL1->chr2:165510134-165700189:-,cordon-bleu_WH2_repeat_protein_like_1,BACE2->beta-site_APP-cleaving_enzyme_2,chr21:42539728-42654445:+	SNU620_STOMACH	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	FOCAD--DENND4C	2	0	FOCAD	30310	chr9:20885229:+	DENND4C	64316	chr9:19276156:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	FOCAD->chr9:20658308-20995954:+,focadhesin,DENND4C->DENN_domain_containing_4C,chr9:19230433-19374139:+	SNU620_STOMACH	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	GMDS-AS1--GMDS	2	0	GMDS-AS1	2273	chr6:2249160:+	GMDS	43013	chr6:1742820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	GTEx_FI:{Salivary_Gland=[count:2=pct:5.1],Thyroid=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},LOCAL_INVERSION:+:-:[56],GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	SNU620_STOMACH	1	1	0.0172	TRUE	1	4	0	3	0	TRUE	ACH-000325
SNU620_STOMACH	MORN1--PRKX	2	0	MORN1	6854	chr1:2316417:-	PRKX	34053	chrX:3533933:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	MORN1->MORN_repeat_containing_1,chr1:2252692-2323146:-,PRKX->chrX:3522411-3631649:-,protein_kinase,_X-linked	SNU620_STOMACH	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	RETSAT--ASNS	2	0	RETSAT	1285	chr2:85581459:-	ASNS	16966	chr7:97493808:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	RETSAT->chr2:85569211-85581743:-,retinol_saturase_(all-trans-retinol_13,14-reductase),ASNS->Oncogene{Bushman},asparagine_synthetase_(glutamine-hydrolyzing),chr7:97481430-97501854:-	SNU620_STOMACH	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	APC--CTC-254B4.1	1	1	APC	1152	chr5:112043346:+	CTC-254B4.1	39651	chr5:106151247:-	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0086	0.0086	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,CTC-254B4.1->chr5:106150898-106346715:-	SNU620_STOMACH	0.5	0.67	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000325
WM983B_SKIN	TIMM23--RP11-574K11.29	13	4	TIMM23	6952	chr10:51606988:-	RP11-574K11.29	13578	chr10:75473090:-	INCL_NON_REF_SPLICE	YES	39	0	0.3	1	0.1906	0.0587	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.29->chr10:75463493-75473339:-	WM983B_SKIN	0.3	1	0.2493	TRUE	1	1	0	6	1	TRUE	ACH-000765
WM983B_SKIN	GRK6--CIT	3	0	GRK6	8161	chr5:176861081:+	CIT	66163	chr12:120125125:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	PROTCLUST,GRK6->G_protein-coupled_receptor_kinase_6,chr5:176830205-176869902:+,CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase	WM983B_SKIN	1	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	RBM27--UBB	3	0	RBM27	5451	chr5:145609440:+	UBB	30671	chr17:16284411:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	WM983B_SKIN	1	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	STAM--RPL10A	3	0	STAM	13880	chr10:17750908:+	RPL10A	20281	chr6:35437171:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	STAM->chr10:17686124-17757913:+,signal_transducing_adaptor_molecule,RPL10A->chr6:35436185-35438562:+,ribosomal_protein_L10a	WM983B_SKIN	1	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	SYNPR-AS1--FRMD4B	3	0	SYNPR-AS1	1074	chr3:63535654:-	FRMD4B	10982	chr3:69481912:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.044	0	SYNPR-AS1->SYNPR_antisense_RNA_1,chr3:63409272-63535727:-,FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-	WM983B_SKIN	1	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	CTNNA1--DAZAP1	2	0	CTNNA1	5795	chr5:138089199:+	DAZAP1	44256	chr19:1416456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	DDX5--MAD1L1	2	0	DDX5	3124	chr17:62502194:-	MAD1L1	51181	chr7:1855864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	EYA1--PPP2R2D	2	0	EYA1	11839	chr8:72181975:-	PPP2R2D	27559	chr10:133757599:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	FGFR4--BMP1	2	0	FGFR4	3773	chr5:176516694:+	BMP1	32861	chr8:22059316:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	FGFR4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176513887-176525145:+,fibroblast_growth_factor_receptor_4,BMP1->bone_morphogenetic_protein_1,chr8:22022249-22069839:+	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	IL1RAP--FBXL13	2	0	IL1RAP	11045	chr3:190282142:+	FBXL13	56881	chr7:102462650:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	IL1RAP->chr3:190231840-190375843:+,interleukin_1_receptor_accessory_protein,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	KATNA1--NSA2	2	0	KATNA1	7278	chr6:149924404:-	NSA2	21347	chr5:74072429:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	KATNA1->chr6:149916009-149970108:-,katanin_catalytic_subunit_A1,NSA2->NSA2,_ribosome_biogenesis_homolog,chr5:74062817-74072737:+	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	LCOR--RPL30	2	0	LCOR	3703	chr10:98667504:+	RPL30	25986	chr8:99055003:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	LCOR->chr10:98592017-98740800:+,ligand_dependent_nuclear_receptor_corepressor,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	NUDCD3--DPY19L1	2	0	NUDCD3	3713	chr7:44524567:-	DPY19L1	26300	chr7:35058208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	NUDCD3->NudC_domain_containing_3,chr7:44418720-44530479:-,DPY19L1->chr7:34968488-35077883:-,dpy-19_like_1_(C._elegans)	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	PKM--PRPF6	2	0	PKM	1708	chr15:72523457:-	PRPF6	34559	chr20:62648076:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PRPF6->chr20:62612488-62664453:+,pre-mRNA_processing_factor_6	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	POLR3F--LRRC58	2	0	POLR3F	4038	chr20:18453553:+	LRRC58	15938	chr3:120053986:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	POLR3F->chr20:18447771-18465287:+,polymerase_(RNA)_III_subunit_F,LRRC58->chr3:120043356-120068186:-,leucine_rich_repeat_containing_58	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	PRICKLE2--PDE4B	2	0	PRICKLE2	5805	chr3:64184460:-	PDE4B	39272	chr1:66798191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2,PDE4B->chr1:66258197-66840259:+,phosphodiesterase_4B	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	RAB11B--ZMYM2	2	0	RAB11B	1476	chr19:8455340:+	ZMYM2	10478	chr13:20534098:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	RP1-179N16.6--SRPK1	2	0	RP1-179N16.6	2169	chr6:36163814:-	SRPK1	24826	chr6:35810381:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	RP1-179N16.6->chr6:36114475-36164982:-,SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	RP11-435B5.4--CHCHD6	2	0	RP11-435B5.4	4638	chr1:143462284:-	CHCHD6	32715	chr3:126676259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	RP11-435B5.4->chr1:143354963-143467632:-,CHCHD6->chr3:126423063-126679249:+,coiled-coil-helix-coiled-coil-helix_domain_containing_6	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	RPL13--ETHE1	2	0	RPL13	1712	chr16:89627776:+	ETHE1	9931	chr19:44015718:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	RPL13->chr16:89627065-89630950:+,ribosomal_protein_L13,ETHE1->ETHE1,_persulfide_dioxygenase,chr19:44010871-44031396:-	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	SF1--CMC4	2	0	SF1	3289	chr11:64543970:-	CMC4	19231	chrX:154292308:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,CMC4->C-x(9)-C_motif_containing_4,chrX:154289897-154299637:-	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	SNX2--AP3S1	2	0	SNX2	1216	chr5:122110906:+	AP3S1	22880	chr5:115202367:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	SNX2->chr5:122110691-122165803:+,sorting_nexin_2,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	SON--ZNF652	2	0	SON	2719	chr21:34918685:+	ZNF652	31826	chr17:47390207:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	SON->SON_DNA_binding_protein,chr21:34914924-34949812:+,ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	COPS3--SIPA1L3	1	1	COPS3	5281	chr17:17171199:-	SIPA1L3	19734	chr19:38519729:+	ONLY_REF_SPLICE	YES	46	1	0.04	0.67	0.0147	0.0147	COPS3->COP9_signalosome_subunit_3,chr17:17150141-17184607:-,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	WM983B_SKIN	0.04	0.67	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	LINC00511--CD300LF	1	1	LINC00511	8867	chr17:70588342:-	CD300LF	36196	chr17:72694620:-	ONLY_REF_SPLICE	YES	42	1	0.05	0.67	0.0147	0.0147	LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,CD300LF->CD300_molecule_like_family_member_f,chr17:72690452-72709117:-	WM983B_SKIN	0.05	0.67	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000765
SNUC5_LARGE_INTESTINE	CCAT1--PSD3	9	5	CCAT1	1279	chr8:128231055:-	PSD3	7478	chr8:18941894:-	INCL_NON_REF_SPLICE	YES	4	0	0.78	1	0.1664	0.0924	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3	SNUC5_LARGE_INTESTINE	0.78	1	0.2588	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	PSD3--CASC8	7	3	PSD3	1525	chr8:18941716:-	CASC8	53501	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1294	0.0555	PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNUC5_LARGE_INTESTINE	1	1	0.1849	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	PCNX--KCNK6	4	0	PCNX	49905	chr14:71576835:+	KCNK6	62093	chr19:38818280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	PCNX->chr14:71374122-71582099:+,KCNK6->chr19:38810484-38819660:+,potassium_two_pore_domain_channel_subfamily_K_member_6	SNUC5_LARGE_INTESTINE	1	1	0.074	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	PLXNB2--BCL2L1	4	0	PLXNB2	19358	chr22:50713920:-	BCL2L1	26833	chr20:30253262:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	PLXNB2->chr22:50713408-50746056:-,plexin_B2,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	SNUC5_LARGE_INTESTINE	1	1	0.074	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	ADCK3--SLC25A5	3	0	ADCK3	13118	chr1:227152789:+	SLC25A5	25623	chrX:118602466:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	ADCK3->aarF_domain_containing_kinase_3,chr1:227085237-227175246:+,SLC25A5->chrX:118602363-118605282:+,solute_carrier_family_25_member_5	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	C17orf76-AS1--SERINC2	3	0	C17orf76-AS1	1593	chr17:16342728:+	SERINC2	24463	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0555	0	C17orf76-AS1->chr17:16342136-16381992:+,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	4	0	2	2	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	EMP1--RP11-400N13.2	3	0	EMP1	1157	chr12:13349806:+	RP11-400N13.2	12783	chr1:222139687:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	EMP1->Oncogene{Bushman},chr12:13349650-13369708:+,epithelial_membrane_protein_1,RP11-400N13.2->chr1:222139683-222158306:+	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	FUBP1--RP11-400N13.2	3	0	FUBP1	18826	chr1:78409868:-	RP11-400N13.2	21959	chr1:222139687:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,RP11-400N13.2->chr1:222139683-222158306:+	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	LRRC59--HPS3	3	0	LRRC59	7247	chr17:48462604:-	HPS3	15277	chr3:148847452:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	LRRC59->chr17:48452420-48474914:-,leucine_rich_repeat_containing_59,HPS3->HPS3,_biogenesis_of_lysosomal_organelles_complex_2_subunit_1,chr3:148847371-148891519:+	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	NRF1--C10orf76	3	0	NRF1	14906	chr7:129367205:+	C10orf76	23138	chr10:103799882:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0555	0	NRF1->Oncogene{Bushman},chr7:129251555-129396922:+,nuclear_respiratory_factor_1,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	PAPOLA--KLK1	3	0	PAPOLA	28152	chr14:97031551:+	KLK1	36394	chr19:51323699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,KLK1->chr19:51322404-51327043:-,kallikrein_1	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	PEX16--FLNA	3	0	PEX16	5668	chr11:45935696:-	FLNA	23182	chrX:153588003:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	PEX16->chr11:45931220-45940363:-,peroxisomal_biogenesis_factor_16,FLNA->chrX:153576892-153603006:-,filamin_A	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	RASA3--DNAJC5	3	0	RASA3	1177	chr13:114897910:-	DNAJC5	31988	chr20:62559688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0555	0	RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-,DNAJC5->DnaJ_heat_shock_protein_family_(Hsp40)_member_C5,chr20:62526518-62567384:+	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	WASL--PTPN1	3	0	WASL	1347	chr7:123388775:-	PTPN1	17621	chr20:49127043:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	WASL->Wiskott-Aldrich_syndrome_like,chr7:123321989-123389121:-,PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	TYW1B--CALN1	2	1	TYW1B	9353	chr7:72209460:-	CALN1	27073	chr7:71743795:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.037	0.0185	TYW1B->chr7:72023729-72298777:-,tRNA-yW_synthesizing_protein_1_homolog_B,CALN1->calneuron_1,chr7:71244476-71912136:-	SNUC5_LARGE_INTESTINE	0.6	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	CALM2--UBB	2	0	CALM2	1161	chr2:47403580:-	UBB	16042	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	CBL--MST1R	2	0	CBL	3966	chr11:119142591:+	MST1R	35949	chr3:49928083:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	CBL->ArcherDX_panel,Cbl_proto-oncogene,FoundationOne_panel,Oncogene{Bushman},chr11:119076752-119178859:+,MST1R->Oncogene{Bushman},chr3:49924435-49941299:-,macrophage_stimulating_1_receptor	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	DDX54--C12orf52	2	0	DDX54	8418	chr12:113612445:-	C12orf52	24632	chr12:113629115:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_INVERSION:-:+:[47],DDX54->DEAD-box_helicase_54,chr12:113594979-113623284:-,C12orf52->chr12:113623331-113630173:+	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	FGD3--NCS1	2	0	FGD3	17951	chr9:95784671:+	NCS1	29546	chr9:132963237:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	FGD3->FYVE,_RhoGEF_and_PH_domain_containing_3,chr9:95709733-95798518:+,NCS1->chr9:132934857-132999583:+,neuronal_calcium_sensor_1	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	PIGN--PAXIP1	2	0	PIGN	1275	chr18:59854077:-	PAXIP1	46498	chr7:154790494:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	PIGN->chr18:59710800-59854351:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_N,PAXIP1->PAX_interacting_protein_1,chr7:154735397-154794794:-	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	POLDIP3--YPEL1	2	0	POLDIP3	3081	chr22:42998776:-	YPEL1	17537	chr22:22065197:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	POLDIP3->chr22:42979727-43010968:-,polymerase_(DNA)_delta_interacting_protein_3,YPEL1->chr22:22051833-22090123:-,yippee_like_1	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	PPP1CB--GNAS	2	0	PPP1CB	1537	chr2:28975042:+	GNAS	32816	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	GTEx&tcga_normals:1/3694=0.03%,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	STPG1--SDCCAG8	2	0	STPG1	7727	chr1:24727809:-	SDCCAG8	39104	chr1:243504341:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	STPG1->chr1:24683489-24743424:-,sperm_tail_PG-rich_repeat_containing_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	TRIM29--CSDE1	2	0	TRIM29	14256	chr11:119991281:-	CSDE1	33122	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	TRIM29->chr11:119981983-120056237:-,tripartite_motif_containing_29,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	ZNF430--ABHD17C	2	0	ZNF430	2277	chr19:21205687:+	ABHD17C	22324	chr15:81041854:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	ZNF430->chr19:21203426-21242856:+,zinc_finger_protein_430,ABHD17C->abhydrolase_domain_containing_17C,chr15:80972025-81047962:+	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	POLDIP3--YPEL1	1	1	POLDIP3	3881	chr22:42997976:-	YPEL1	17537	chr22:22065197:-	ONLY_REF_SPLICE	YES	46	0	0.04	1	0.0185	0.0185	POLDIP3->chr22:42979727-43010968:-,polymerase_(DNA)_delta_interacting_protein_3,YPEL1->chr22:22051833-22090123:-,yippee_like_1	SNUC5_LARGE_INTESTINE	0.04	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
NCIH1435_LUNG	ERLIN2--TMEM68	230	281	ERLIN2	3513	chr8:37597964:+	TMEM68	30092	chr8:56657680:-	ONLY_REF_SPLICE	YES	121	131	0.81	0.8	3.0346	3.7075	{Klijn_CCL:Lung=1},ERLIN2->ER_lipid_raft_associated_2,chr8:37594117-37616619:+,TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68	NCIH1435_LUNG	0.8	0.81	6.7421	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	PRCP--INTS4	102	57	PRCP	6864	chr11:82571019:-	INTS4	30977	chr11:77672184:-	ONLY_REF_SPLICE	YES	240	871	0.4	0.15	1.3458	0.752	{Klijn_CCL:Lung=1},PRCP->chr11:82534544-82681626:-,prolylcarboxypeptidase,INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4	NCIH1435_LUNG	0.15	0.4	2.0978	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	RPS6KB2--KDM2A	87	51	RPS6KB2	5583	chr11:67200513:+	KDM2A	15017	chr11:66916526:+	ONLY_REF_SPLICE	YES	214	48	0.39	0.74	1.1479	0.6729	{Klijn_CCL:Lung=1},RPS6KB2->chr11:67195931-67202872:+,ribosomal_protein_S6_kinase_B2,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	NCIH1435_LUNG	0.39	0.74	1.8208	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	ERLIN2--TMEM68	46	80	ERLIN2	3513	chr8:37597964:+	TMEM68	32293	chr8:56652777:-	ONLY_REF_SPLICE	YES	121	189	0.51	0.4	0.6069	1.0555	{Klijn_CCL:Lung=1},ERLIN2->ER_lipid_raft_associated_2,chr8:37594117-37616619:+,TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68	NCIH1435_LUNG	0.4	0.51	1.6624	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	ERLIN2--TMEM68	8	210	ERLIN2	3513	chr8:37597964:+	TMEM68	31153	chr8:56656179:-	ONLY_REF_SPLICE	YES	121	145	0.64	0.6	0.1056	2.7707	{Klijn_CCL:Lung=1},ERLIN2->ER_lipid_raft_associated_2,chr8:37594117-37616619:+,TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68	NCIH1435_LUNG	0.6	0.64	2.8763	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	ERLIN2--TMEM68	5	198	ERLIN2	2431	chr8:37595547:+	TMEM68	30092	chr8:56657680:-	ONLY_REF_SPLICE	YES	151	131	0.57	0.61	0.066	2.6124	{Klijn_CCL:Lung=1},ERLIN2->ER_lipid_raft_associated_2,chr8:37594117-37616619:+,TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68	NCIH1435_LUNG	0.57	0.61	2.6784	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	DDX23--RP11-850F7.7	34	11	DDX23	11526	chr12:49228177:-	RP11-850F7.7	20297	chr12:55078853:+	INCL_NON_REF_SPLICE	YES	428	0	0.1	1	0.4486	0.1451	DDX23->DEAD-box_helicase_23,chr12:49223547-49246625:-,RP11-850F7.7->chr12:55076757-55081218:+	NCIH1435_LUNG	0.1	1	0.5937	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MICAL3--SIRPD	13	11	MICAL3	2388	chr22:18484159:-	SIRPD	66269	chr20:1532684:-	ONLY_REF_SPLICE	YES	25	1	0.49	0.96	0.1715	0.1451	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SIRPD->chr20:1514897-1539489:-,signal_regulatory_protein_delta	NCIH1435_LUNG	0.49	0.96	0.3166	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	GPR107--LAMA2	9	18	GPR107	14977	chr9:132869818:+	LAMA2	34379	chr6:129371063:+	ONLY_REF_SPLICE	YES	75	0	0.26	1	0.1187	0.2375	GPR107->G_protein-coupled_receptor_107,chr9:132815705-132902448:+,LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2	NCIH1435_LUNG	0.26	1	0.3562	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	SCAND2P--KIF7	11	8	SCAND2P	7108	chr15:85181708:+	KIF7	16574	chr15:90193172:-	ONLY_REF_SPLICE	YES	17	3	0.53	0.86	0.1451	0.1056	SCAND2P->SCAN_domain_containing_2_pseudogene,chr15:85174682-85185695:+,KIF7->chr15:90152020-90198682:-,kinesin_family_member_7	NCIH1435_LUNG	0.53	0.86	0.2507	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	TENM4--ACER3	10	5	TENM4	7069	chr11:78926853:-	ACER3	63826	chr11:76579164:+	ONLY_REF_SPLICE	YES	0	112	1	0.12	0.1319	0.066	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,ACER3->alkaline_ceramidase_3,chr11:76571911-76737841:+	NCIH1435_LUNG	0.12	1	0.1979	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	HMGN2--KRT8	9	0	HMGN2	1167	chr1:26799107:+	KRT8	12695	chr12:53298761:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1187	0	HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2,KRT8->chr12:53290977-53343738:-,keratin_8	NCIH1435_LUNG	1	1	0.1187	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	CCSER2--LINC00858	5	10	CCSER2	4876	chr10:86133571:+	LINC00858	28144	chr10:86047980:+	ONLY_REF_SPLICE	YES	31	0	0.33	1	0.066	0.1319	LOCAL_REARRANGEMENT:+:[33927],CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,LINC00858->chr10:86039736-86054415:+,long_intergenic_non-protein_coding_RNA_858	NCIH1435_LUNG	0.33	1	0.1979	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	RP11-722M1.1--RP11-431M7.2	4	12	RP11-722M1.1	7110	chr4:36500049:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	11	17	0.59	0.48	0.0528	0.1583	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	NCIH1435_LUNG	0.48	0.59	0.2111	TRUE	0	1	0	4	1	TRUE	ACH-000852
NCIH1435_LUNG	MICAL3--SIRPD	5	7	MICAL3	1279	chr22:18507047:-	SIRPD	66269	chr20:1532684:-	ONLY_REF_SPLICE	YES	8	1	0.6	0.92	0.066	0.0924	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SIRPD->chr20:1514897-1539489:-,signal_regulatory_protein_delta	NCIH1435_LUNG	0.6	0.92	0.1584	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	GPR107--LAMA2	2	18	GPR107	16034	chr9:132872705:+	LAMA2	34379	chr6:129371063:+	ONLY_REF_SPLICE	YES	79	0	0.2	1	0.0264	0.2375	GPR107->G_protein-coupled_receptor_107,chr9:132815705-132902448:+,LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2	NCIH1435_LUNG	0.2	1	0.2639	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MICAL3--SIRPD	3	12	MICAL3	2388	chr22:18484159:-	SIRPD	66258	chr20:1532695:-	INCL_NON_REF_SPLICE	NO	25	1	0.38	0.94	0.0396	0.1583	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SIRPD->chr20:1514897-1539489:-,signal_regulatory_protein_delta	NCIH1435_LUNG	0.38	0.94	0.1979	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MICAL3--SIRPD	4	2	MICAL3	2388	chr22:18484159:-	SIRPD	67620	chr20:1517956:-	ONLY_REF_SPLICE	YES	25	12	0.19	0.33	0.0528	0.0264	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SIRPD->chr20:1514897-1539489:-,signal_regulatory_protein_delta	NCIH1435_LUNG	0.19	0.33	0.0792	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	RP11-722M1.1--RP11-431M7.2	1	11	RP11-722M1.1	4366	chr4:36584279:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	21	17	0.36	0.41	0.0132	0.1451	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	NCIH1435_LUNG	0.36	0.41	0.1583	TRUE	0	1	0	4	1	TRUE	ACH-000852
NCIH1435_LUNG	SCAND2P--KIF7	1	10	SCAND2P	7108	chr15:85181708:+	KIF7	16471	chr15:90193275:-	ONLY_REF_SPLICE	YES	17	3	0.39	0.79	0.0132	0.1319	SCAND2P->SCAN_domain_containing_2_pseudogene,chr15:85174682-85185695:+,KIF7->chr15:90152020-90198682:-,kinesin_family_member_7	NCIH1435_LUNG	0.39	0.79	0.1451	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MICAL3--SIRPD	3	1	MICAL3	2388	chr22:18484159:-	SIRPD	68776	chr20:1515087:-	ONLY_REF_SPLICE	YES	25	18	0.14	0.18	0.0396	0.0132	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SIRPD->chr20:1514897-1539489:-,signal_regulatory_protein_delta	NCIH1435_LUNG	0.14	0.18	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	RPS6KB2--KDM2A	1	8	RPS6KB2	5583	chr11:67200513:+	KDM2A	16170	chr11:66947550:+	ONLY_REF_SPLICE	YES	214	41	0.04	0.18	0.0132	0.1056	{Klijn_CCL:Lung=1},RPS6KB2->chr11:67195931-67202872:+,ribosomal_protein_S6_kinase_B2,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	NCIH1435_LUNG	0.04	0.18	0.1188	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	RP11-722M1.1--RP11-431M7.2	1	5	RP11-722M1.1	2124	chr4:36617076:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	13	17	0.32	0.26	0.0132	0.066	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	NCIH1435_LUNG	0.26	0.32	0.0792	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MORN1--RER1	2	0	MORN1	6854	chr1:2316417:-	RER1	29529	chr1:2327223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},LOCAL_INVERSION:-:+:[121],MORN1->MORN_repeat_containing_1,chr1:2252692-2323146:-,RER1->chr1:2323267-2336883:+,retention_in_endoplasmic_reticulum_sorting_receptor_1	NCIH1435_LUNG	1	1	0.0264	TRUE	0	1	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	NRG1--LPHN3	2	0	NRG1	11459	chr8:32579560:+	LPHN3	36905	chr4:62542544:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	NRG1->chr8:31496902-32622548:+,neuregulin_1,LPHN3->chr4:62066976-62944053:+	NCIH1435_LUNG	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	PLEKHA1--TACC2	2	0	PLEKHA1	1111	chr10:124134322:+	TACC2	75405	chr10:124008158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,TACC2->chr10:123748689-124014060:+,transforming_acidic_coiled-coil_containing_protein_2	NCIH1435_LUNG	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	TGFBR2--CMC1	2	0	TGFBR2	4911	chr3:30691952:+	CMC1	18240	chr3:28304782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=2},TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+	NCIH1435_LUNG	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MICAL3--SIRPD	1	2	MICAL3	1279	chr22:18507047:-	SIRPD	67620	chr20:1517956:-	ONLY_REF_SPLICE	NO	8	12	0.27	0.2	0.0132	0.0264	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SIRPD->chr20:1514897-1539489:-,signal_regulatory_protein_delta	NCIH1435_LUNG	0.2	0.27	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000852
TUHR14TKB_KIDNEY	EWSR1--ARHGAP19	286	248	EWSR1	9174	chr22:29674205:+	ARHGAP19	27243	chr10:99025882:-	ONLY_REF_SPLICE	YES	90	0	0.86	1	3.4396	2.9826	EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,ARHGAP19->Rho_GTPase_activating_protein_19,chr10:98978996-99052413:-	TUHR14TKB_KIDNEY	0.86	1	6.4222	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	ZC3H7A--BCAR4	99	36	ZC3H7A	9531	chr16:11868092:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	57	0	0.7	1	1.1906	0.433	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	TUHR14TKB_KIDNEY	0.7	1	1.6236	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	GSK3B--ME3	32	10	GSK3B	2071	chr3:119812194:-	ME3	23685	chr11:86383000:-	ONLY_REF_SPLICE	YES	20	0	0.68	1	0.3848	0.1203	GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3	TUHR14TKB_KIDNEY	0.68	1	0.5051	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	GSK3B--ME3	27	8	GSK3B	2071	chr3:119812194:-	ME3	26442	chr11:86270865:-	ONLY_REF_SPLICE	YES	20	5	0.64	0.88	0.3247	0.0962	GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3	TUHR14TKB_KIDNEY	0.64	0.88	0.4209	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	RIC8B--RFX4	27	7	RIC8B	2879	chr12:107177822:+	RFX4	51044	chr12:107125908:+	ONLY_REF_SPLICE	YES	12	0	0.74	1	0.3247	0.0842	LOCAL_REARRANGEMENT:+:[11792],RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+,RFX4->chr12:106976685-107156581:+,regulatory_factor_X4	TUHR14TKB_KIDNEY	0.74	1	0.4089	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	RABL6--KIAA1984	9	0	RABL6	10093	chr9:139723936:+	KIAA1984	25966	chr9:139694841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1082	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,LOCAL_REARRANGEMENT:+:[181],RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+,KIAA1984->chr9:139690802-139702193:+	TUHR14TKB_KIDNEY	1	1	0.1082	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	ARHGAP19--EMID1	6	4	ARHGAP19	6881	chr10:99019159:-	EMID1	35873	chr22:29654806:+	ONLY_REF_SPLICE	YES	3	5	0.77	0.67	0.0722	0.0481	ARHGAP19->Rho_GTPase_activating_protein_19,chr10:98978996-99052413:-,EMID1->EMI_domain_containing_1,chr22:29601840-29655586:+	TUHR14TKB_KIDNEY	0.67	0.77	0.1203	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	BAI2--DCUN1D4	5	1	BAI2	6970	chr1:32221600:-	DCUN1D4	31769	chr4:52729603:+	ONLY_REF_SPLICE	YES	1	14	0.86	0.3	0.0601	0.012	BAI2->chr1:32192718-32230494:-,DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4	TUHR14TKB_KIDNEY	0.3	0.86	0.0721	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	CSNK2A1--RP5-850E9.3	5	0	CSNK2A1	1150	chr20:524316:-	RP5-850E9.3	26282	chr20:634964:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0601	0	CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,RP5-850E9.3->chr20:627270-656444:-	TUHR14TKB_KIDNEY	1	1	0.0601	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	HIF1A--RP11-47I22.3	3	2	HIF1A	6097	chr14:62188541:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	12	2	0.29	0.71	0.0361	0.0241	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	TUHR14TKB_KIDNEY	0.29	0.71	0.0602	TRUE	0	0	0	2	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	ACTN4--ANAPC16	3	0	ACTN4	12324	chr19:39208601:+	ANAPC16	27581	chr10:73983643:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,ANAPC16->anaphase_promoting_complex_subunit_16,chr10:73975787-73995618:+	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	ALYREF--PLEC	3	0	ALYREF	4238	chr17:79846225:-	PLEC	37439	chr8:144995701:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	ALYREF->Aly/REF_export_factor,chr17:79845713-79849462:-,PLEC->chr8:144989321-145050902:-,plectin	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MLF2--GALNT10	3	0	MLF2	5961	chr12:6859096:-	GALNT10	15549	chr5:153674374:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	MLF2->chr12:6857170-6876641:-,myeloid_leukemia_factor_2,GALNT10->chr5:153570290-153800544:+,polypeptide_N-acetylgalactosaminyltransferase_10	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	OCIAD2--COX17	3	0	OCIAD2	7471	chr4:48894832:-	COX17	12281	chr3:119396083:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	OCIAD2->OCIA_domain_containing_2,chr4:48887036-48908954:-,COX17->COX17_cytochrome_c_oxidase_copper_chaperone,chr3:119373360-119396301:-	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	PGLS--PARP3	3	0	PGLS	6894	chr19:17631921:+	PARP3	13248	chr3:51979538:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	PGLS->6-phosphogluconolactonase,chr19:17622438-17632097:+,PARP3->chr3:51976361-51982883:+,poly(ADP-ribose)_polymerase_family_member_3	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	PLEC--TUFT1	3	0	PLEC	33089	chr8:144993301:-	TUFT1	48296	chr1:151547386:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	PLEC->chr8:144989321-145050902:-,plectin,TUFT1->chr1:151512781-151556059:+,tuftelin_1	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	PLXNA1--TBC1D9B	3	0	PLXNA1	14688	chr3:126737344:+	TBC1D9B	33272	chr5:179331770:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	PLXNA1->chr3:126707437-126756235:+,plexin_A1,TBC1D9B->TBC1_domain_family_member_9B,chr5:179289066-179334859:-	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	CCT6A--AC091729.9	2	0	CCT6A	2991	chr7:56122196:+	AC091729.9	16640	chr7:1202598:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,AC091729.9->chr7:1200010-1204903:+	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	CLDN12--LEPR	2	0	CLDN12	4838	chr7:90034926:+	LEPR	26098	chr1:65890986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	CLDN12->chr7:90013035-90142716:+,claudin_12,LEPR->chr1:65886248-66107242:+,leptin_receptor	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	CUX1--KLC1	2	0	CUX1	1415	chr7:101459373:+	KLC1	78650	chr14:104166992:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	DIABLO--MYEF2	2	0	DIABLO	7311	chr12:122701035:-	MYEF2	24923	chr15:48446090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	DIABLO->chr12:122692210-122712081:-,diablo_IAP-binding_mitochondrial_protein,MYEF2->chr15:48431625-48470714:-,myelin_expression_factor_2	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	FAM19A5--CEBPZ	2	0	FAM19A5	5924	chr22:49103656:+	CEBPZ	14615	chr2:37456179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	FAM19A5->chr22:48885272-49246724:+,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A5,CEBPZ->CCAAT/enhancer_binding_protein_zeta,chr2:37428755-37458856:-	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	FBXL17--PPIP5K2	2	0	FBXL17	5914	chr5:107684100:-	PPIP5K2	38376	chr5:102502883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-,PPIP5K2->chr5:102455853-102548500:+,diphosphoinositol_pentakisphosphate_kinase_2	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	GUSBP1--CFL1	2	0	GUSBP1	1144	chr5:21342085:+	CFL1	25204	chr11:65623713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GUSBP1->chr5:21341942-21589481:+,glucuronidase,_beta_pseudogene_1,CFL1->chr11:65590493-65629497:-,cofilin_1	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	LITAF--TXNDC11	2	0	LITAF	6541	chr16:11680742:-	TXNDC11	29112	chr16:11792181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	LOCAL_REARRANGEMENT:-:[42699],LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MCMDC2--BPGM	2	0	MCMDC2	14556	chr8:67817570:+	BPGM	27092	chr7:134363605:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	MCMDC2->chr8:67782984-67834283:+,minichromosome_maintenance_domain_containing_2,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MTF2--TFRC	2	0	MTF2	1297	chr1:93545088:+	TFRC	21485	chr3:195803993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MYO6--CCT8	2	0	MYO6	30898	chr6:76604977:+	CCT8	53326	chr21:30434877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	MYO6->chr6:76458909-76629254:+,myosin_VI,CCT8->chaperonin_containing_TCP1_subunit_8,chr21:30428126-30446118:-	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	OPTN--MYL12A	2	0	OPTN	9906	chr10:13164487:+	MYL12A	27277	chr18:3253231:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	OPTN->chr10:13141449-13180291:+,optineurin,MYL12A->chr18:3247479-3256234:+,myosin_light_chain_12A	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	RP11-568K15.1--PDHA1	2	0	RP11-568K15.1	4246	chr1:178003840:-	PDHA1	24934	chrX:19372609:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	RP11-568K15.1->chr1:177975271-178007085:-,PDHA1->chrX:19362011-19379823:+,pyruvate_dehydrogenase_(lipoamide)_alpha_1	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	SACS--MIPEP	2	0	SACS	1088	chr13:24007754:-	MIPEP	33697	chr13:24449048:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	SACS->chr13:23902965-24007841:-,sacsin_molecular_chaperone,MIPEP->chr13:24304328-24463558:-,mitochondrial_intermediate_peptidase	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	SRPK2--PUS7	2	0	SRPK2	2897	chr7:105029095:-	PUS7	36117	chr7:105135700:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	USP10--COTL1	2	0	USP10	7066	chr16:84767109:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	5	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	USP34--CCT4	2	0	USP34	1120	chr2:61697785:-	CCT4	79292	chr2:62110683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Sarcomatoid=1,Skin=1,Kidney=1,Lymphoid=1},USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	2	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	VMP1--TUBD1	2	0	VMP1	16307	chr17:57915758:+	TUBD1	32995	chr17:57944110:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:+:-:[17235],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,TUBD1->chr17:57936851-57970304:-,tubulin_delta_1	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	WDR36--HNRNPH1	2	0	WDR36	1903	chr5:110428316:+	HNRNPH1	38999	chr5:179043219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	WDR36->WD_repeat_domain_36,chr5:110427414-110466200:+,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	RIC8B--RFX4	1	2	RIC8B	2879	chr12:107177822:+	RFX4	51838	chr12:107126702:+	ONLY_REF_SPLICE	YES	12	5	0.2	0.38	0.012	0.0241	LOCAL_REARRANGEMENT:+:[11792],RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+,RFX4->chr12:106976685-107156581:+,regulatory_factor_X4	TUHR14TKB_KIDNEY	0.2	0.38	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	SHROOM3--RP11-328K4.1	1	1	SHROOM3	11918	chr4:77631440:+	RP11-328K4.1	39995	chr4:104374757:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.012	0.012	SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,RP11-328K4.1->chr4:104177316-104374815:+	TUHR14TKB_KIDNEY	0.4	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000317
NCIH446_LUNG	PVT1--CASC8	200	219	PVT1	1202	chr8:128806980:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	126	15	0.77	0.97	2.1119	2.3125	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH446_LUNG	0.77	0.97	4.4244	TRUE	0	2	0	5	2	TRUE	ACH-000800
NCIH446_LUNG	PVT1--CASC8	99	263	PVT1	1202	chr8:128806980:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	126	2	0.74	0.99	1.0454	2.7771	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH446_LUNG	0.74	0.99	3.8225	TRUE	0	0	0	5	0	TRUE	ACH-000800
NCIH446_LUNG	PVT1--LY6H	146	28	PVT1	1202	chr8:128806980:+	LY6H	29454	chr8:144241126:-	ONLY_REF_SPLICE	YES	126	8	0.58	0.96	1.5417	0.2957	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LY6H->chr8:144239331-144242128:-,lymphocyte_antigen_6_complex,_locus_H	NCIH446_LUNG	0.58	0.96	1.8374	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-120J1.1--RP11-89K10.1	77	29	RP11-120J1.1	1261	chr9:14317344:+	RP11-89K10.1	8112	chr8:127601437:+	ONLY_REF_SPLICE	YES	51	0	0.68	1	0.8131	0.3062	RP11-120J1.1->chr9:14317084-14357907:+,RP11-89K10.1->chr8:127570120-127725660:+	NCIH446_LUNG	0.68	1	1.1193	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	KLF3--KLHL5	70	36	KLF3	2362	chr4:38682303:+	KLHL5	18579	chr4:39077585:+	ONLY_REF_SPLICE	YES	15	21	0.88	0.83	0.7392	0.3801	KLF3->Kruppel-like_factor_3_(basic),Oncogene{Bushman},chr4:38665817-38702663:+,KLHL5->chr4:39046659-39128477:+,kelch_like_family_member_5	NCIH446_LUNG	0.83	0.88	1.1193	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	PVT1--CASC8	1	272	PVT1	2457	chr8:128808254:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	109	2	0.71	0.99	0.0106	2.8721	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH446_LUNG	0.71	0.99	2.8827	TRUE	0	0	0	2	0	TRUE	ACH-000800
NCIH446_LUNG	PVT1--CASC8	3	226	PVT1	2457	chr8:128808254:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	109	15	0.68	0.94	0.0317	2.3864	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH446_LUNG	0.68	0.94	2.4181	TRUE	0	1	0	4	0	TRUE	ACH-000800
NCIH446_LUNG	PVT1--CASC8	1	226	PVT1	2520	chr8:128808317:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	90	15	0.72	0.94	0.0106	2.3864	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH446_LUNG	0.72	0.94	2.397	TRUE	0	1	0	4	0	TRUE	ACH-000800
NCIH446_LUNG	ERBB4--AC079610.1	29	2	ERBB4	1393	chr2:213403173:-	AC079610.1	50458	chr2:213446132:-	ONLY_REF_SPLICE	YES	52	0	0.37	1	0.3062	0.0211	LOCAL_REARRANGEMENT:-:[42516],ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,AC079610.1->chr2:213446081-213886269:-	NCIH446_LUNG	0.37	1	0.3273	TRUE	0	2	0	3	2	TRUE	ACH-000800
NCIH446_LUNG	RP11-89K10.1--RP11-120J1.1	22	4	RP11-89K10.1	2156	chr8:127601535:+	RP11-120J1.1	15701	chr9:14357151:+	ONLY_REF_SPLICE	YES	0	57	1	0.31	0.2323	0.0422	RP11-89K10.1->chr8:127570120-127725660:+,RP11-120J1.1->chr9:14317084-14357907:+	NCIH446_LUNG	0.31	1	0.2745	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RALA--YAE1D1	18	14	RALA	1343	chr7:39663424:+	YAE1D1	15182	chr7:39610105:+	ONLY_REF_SPLICE	YES	519	173	0.06	0.16	0.1901	0.1478	LOCAL_REARRANGEMENT:+:[13163],RALA->Oncogene{Bushman},chr7:39663082-39747723:+,v-ral_simian_leukemia_viral_oncogene_homolog_A_(ras_related),YAE1D1->Yae1_domain_containing_1,chr7:39605975-39649919:+	NCIH446_LUNG	0.06	0.16	0.3379	TRUE	0	2	0	1	1	TRUE	ACH-000800
NCIH446_LUNG	APBA1--PTAR1	17	8	APBA1	1154	chr9:72287069:-	PTAR1	27014	chr9:72356774:-	ONLY_REF_SPLICE	YES	32	107	0.44	0.19	0.1795	0.0845	LOCAL_REARRANGEMENT:-:[37216],APBA1->amyloid_beta_precursor_protein_binding_family_A_member_1,chr9:72042446-72287222:-,PTAR1->chr9:72324438-72374875:-,protein_prenyltransferase_alpha_subunit_repeat_containing_1	NCIH446_LUNG	0.19	0.44	0.264	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-123O10.4--RP11-81H14.2	17	8	RP11-123O10.4	1113	chr12:67462830:-	RP11-81H14.2	5304	chr12:68845332:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1795	0.0845	RP11-123O10.4->chr12:67285656-67462942:-,RP11-81H14.2->chr12:68726668-68845443:-	NCIH446_LUNG	1	1	0.264	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-98J23.2--CDH12P3	16	11	RP11-98J23.2	5639	chr5:69216694:+	CDH12P3	10901	chr5:69428506:+	ONLY_REF_SPLICE	YES	48	0	0.36	1	0.1689	0.1162	RP11-98J23.2->chr5:69171098-69274436:+,CDH12P3->cadherin_12_pseudogene_3,chr5:69428506-69428800:+	NCIH446_LUNG	0.36	1	0.2851	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	MTDH--TRHR	18	2	MTDH	1709	chr8:98657115:+	TRHR	23749	chr8:110131277:+	ONLY_REF_SPLICE	YES	64	2	0.24	0.91	0.1901	0.0211	{Klijn_CCL:Lung=1},MTDH->chr8:98656407-98740998:+,metadherin,TRHR->Oncogene{Bushman},chr8:110098850-110131813:+,thyrotropin_releasing_hormone_receptor	NCIH446_LUNG	0.24	0.91	0.2112	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	PVT1--LY6H	10	28	PVT1	2457	chr8:128808254:+	LY6H	29454	chr8:144241126:-	ONLY_REF_SPLICE	YES	109	8	0.26	0.83	0.1056	0.2957	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LY6H->chr8:144239331-144242128:-,lymphocyte_antigen_6_complex,_locus_H	NCIH446_LUNG	0.26	0.83	0.4013	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-408A13.2--NFIB	8	25	RP11-408A13.2	1096	chr9:14531945:-	NFIB	4303	chr9:14398807:-	INCL_NON_REF_SPLICE	YES	0	2	1	0.94	0.0845	0.264	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NCIH446_LUNG	0.94	1	0.3485	TRUE	0	0	0	2	0	TRUE	ACH-000800
NCIH446_LUNG	HELLS--TBC1D12	11	8	HELLS	1709	chr10:96306255:+	TBC1D12	38230	chr10:96253122:+	ONLY_REF_SPLICE	YES	163	15	0.1	0.56	0.1162	0.0845	LOCAL_REARRANGEMENT:+:[9860],HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,TBC1D12->TBC1_domain_family_member_12,chr10:96162261-96295687:+	NCIH446_LUNG	0.1	0.56	0.2007	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	APBA1--PTAR1	8	15	APBA1	1154	chr9:72287069:-	PTAR1	25844	chr9:72365866:-	ONLY_REF_SPLICE	YES	32	30	0.42	0.43	0.0845	0.1584	LOCAL_REARRANGEMENT:-:[37216],APBA1->amyloid_beta_precursor_protein_binding_family_A_member_1,chr9:72042446-72287222:-,PTAR1->chr9:72324438-72374875:-,protein_prenyltransferase_alpha_subunit_repeat_containing_1	NCIH446_LUNG	0.42	0.43	0.2429	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	KLF3--KLHL5	2	39	KLF3	2362	chr4:38682303:+	KLHL5	16340	chr4:39064179:+	ONLY_REF_SPLICE	YES	15	0	0.73	1	0.0211	0.4118	KLF3->Kruppel-like_factor_3_(basic),Oncogene{Bushman},chr4:38665817-38702663:+,KLHL5->chr4:39046659-39128477:+,kelch_like_family_member_5	NCIH446_LUNG	0.73	1	0.4329	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	PVT1--LY6H	3	32	PVT1	1202	chr8:128806980:+	LY6H	28546	chr8:144242034:-	INCL_NON_REF_SPLICE	YES	126	0	0.22	1	0.0317	0.3379	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LY6H->chr8:144239331-144242128:-,lymphocyte_antigen_6_complex,_locus_H	NCIH446_LUNG	0.22	1	0.3696	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	NIN--TRIM9	10	0	NIN	1658	chr14:51297182:-	TRIM9	48969	chr14:51492078:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1056	0	NIN->Oncogene{Bushman},chr14:51186481-51297839:-,ninein,TRIM9->chr14:51441980-51562779:-,tripartite_motif_containing_9	NCIH446_LUNG	1	1	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	UNK--ITGB4	9	3	UNK	1385	chr17:73781065:+	ITGB4	24741	chr17:73723275:+	ONLY_REF_SPLICE	YES	193	3	0.06	0.8	0.095	0.0317	LOCAL_REARRANGEMENT:+:[26782],UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	NCIH446_LUNG	0.06	0.8	0.1267	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	KCNC2--CAPS2	8	6	KCNC2	3370	chr12:75601077:-	CAPS2	37231	chr12:75687147:-	ONLY_REF_SPLICE	YES	33	5	0.3	0.74	0.0845	0.0634	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[66111],KCNC2->chr12:75433857-75603648:-,potassium_voltage-gated_channel_subfamily_C_member_2,CAPS2->calcyphosine_2,chr12:75669759-75784708:-	NCIH446_LUNG	0.3	0.74	0.1479	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	PVT1--LY6H	2	28	PVT1	2520	chr8:128808317:+	LY6H	29454	chr8:144241126:-	ONLY_REF_SPLICE	YES	90	8	0.25	0.79	0.0211	0.2957	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LY6H->chr8:144239331-144242128:-,lymphocyte_antigen_6_complex,_locus_H	NCIH446_LUNG	0.25	0.79	0.3168	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	UNC5A--EIF4E1B	9	0	UNC5A	1344	chr5:176237821:+	EIF4E1B	18936	chr5:176069044:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.095	0	GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1},UNC5A->chr5:176237478-176307897:+,unc-5_netrin_receptor_A,EIF4E1B->chr5:176057683-176073642:+,eukaryotic_translation_initiation_factor_4E_family_member_1B	NCIH446_LUNG	1	1	0.095	TRUE	1	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	KCNC2--CAPS2	6	9	KCNC2	7507	chr12:75444937:-	CAPS2	37231	chr12:75687147:-	INCL_NON_REF_SPLICE	YES	9	5	0.62	0.75	0.0634	0.095	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[66111],KCNC2->chr12:75433857-75603648:-,potassium_voltage-gated_channel_subfamily_C_member_2,CAPS2->calcyphosine_2,chr12:75669759-75784708:-	NCIH446_LUNG	0.62	0.75	0.1584	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	PVT1--LY6H	1	29	PVT1	1202	chr8:128806980:+	LY6H	28896	chr8:144241684:-	ONLY_REF_SPLICE	YES	126	1	0.19	0.97	0.0106	0.3062	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LY6H->chr8:144239331-144242128:-,lymphocyte_antigen_6_complex,_locus_H	NCIH446_LUNG	0.19	0.97	0.3168	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	TYW1--ZNF92	5	5	TYW1	12596	chr7:66532390:+	ZNF92	24709	chr7:64852815:+	ONLY_REF_SPLICE	YES	35	99	0.22	0.09	0.0528	0.0528	TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog,ZNF92->chr7:64838712-64866038:+,zinc_finger_protein_92	NCIH446_LUNG	0.09	0.22	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	KLF3--KLHL5	2	15	KLF3	2362	chr4:38682303:+	KLHL5	19762	chr4:39082723:+	ONLY_REF_SPLICE	YES	15	61	0.53	0.22	0.0211	0.1584	KLF3->Kruppel-like_factor_3_(basic),Oncogene{Bushman},chr4:38665817-38702663:+,KLHL5->chr4:39046659-39128477:+,kelch_like_family_member_5	NCIH446_LUNG	0.22	0.53	0.1795	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-123O10.4--RP11-81H14.2	5	2	RP11-123O10.4	1113	chr12:67462830:-	RP11-81H14.2	6565	chr12:68835921:-	ONLY_REF_SPLICE	YES	0	7	1	0.5	0.0528	0.0211	RP11-123O10.4->chr12:67285656-67462942:-,RP11-81H14.2->chr12:68726668-68845443:-	NCIH446_LUNG	0.5	1	0.0739	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	ARHGEF28--ENC1	4	0	ARHGEF28	1165	chr5:72922147:+	ENC1	58059	chr5:73932323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0422	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Frontal_Cortex_(BA9)=1},ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+,ENC1->Oncogene{Bushman},chr5:73923234-73937249:-,ectodermal-neural_cortex_1	NCIH446_LUNG	1	1	0.0422	TRUE	0	0	0	2	0	TRUE	ACH-000800
NCIH446_LUNG	KIAA1456--LINC00681	2	8	KIAA1456	1325	chr8:12803475:+	LINC00681	27109	chr8:12675472:+	ONLY_REF_SPLICE	YES	58	0	0.15	1	0.0211	0.0845	KIAA1456->KIAA1456,chr8:12803151-12889012:+,LINC00681->chr8:12651752-12675800:+,long_intergenic_non-protein_coding_RNA_681	NCIH446_LUNG	0.15	1	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	CDKAL1--E2F3	3	0	CDKAL1	5319	chr6:20649608:+	E2F3	24841	chr6:20480077:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:+:[40747],CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,E2F3->E2F_transcription_factor_3,Oncogene{Bushman},chr6:20402398-20493941:+	NCIH446_LUNG	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	UNC5A--EIF4E1B	3	0	UNC5A	1344	chr5:176237821:+	EIF4E1B	17355	chr5:176057856:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1},UNC5A->chr5:176237478-176307897:+,unc-5_netrin_receptor_A,EIF4E1B->chr5:176057683-176073642:+,eukaryotic_translation_initiation_factor_4E_family_member_1B	NCIH446_LUNG	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-123O10.4--RP11-81H14.2	2	1	RP11-123O10.4	1113	chr12:67462830:-	RP11-81H14.2	15123	chr12:68727444:-	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0211	0.0106	RP11-123O10.4->chr12:67285656-67462942:-,RP11-81H14.2->chr12:68726668-68845443:-	NCIH446_LUNG	0.33	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	BOC--GALNT13	2	0	BOC	3779	chr3:112935121:+	GALNT13	29218	chr2:154757449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	BOC->BOC_cell_adhesion_associated,_oncogene_regulated,chr3:112929850-113006303:+,GALNT13->chr2:154728426-155310361:+,polypeptide_N-acetylgalactosaminyltransferase_13	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	11	0	TRUE	ACH-000800
NCIH446_LUNG	GUSBP1--MXI1	2	0	GUSBP1	4568	chr5:21461975:+	MXI1	24938	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GUSBP1->chr5:21341942-21589481:+,glucuronidase,_beta_pseudogene_1,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	KLF3--KLHL5	1	4	KLF3	1266	chr4:38666082:+	KLHL5	19762	chr4:39082723:+	ONLY_REF_SPLICE	YES	12	61	0.29	0.08	0.0106	0.0422	KLF3->Kruppel-like_factor_3_(basic),Oncogene{Bushman},chr4:38665817-38702663:+,KLHL5->chr4:39046659-39128477:+,kelch_like_family_member_5	NCIH446_LUNG	0.08	0.29	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	MANBA--NFKB1	2	0	MANBA	1277	chr4:103681875:-	NFKB1	37744	chr4:103488144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_INVERSION:-:+:[14201],MANBA->chr4:103552660-103682151:-,mannosidase_beta,NFKB1->Oncogene{Bushman},chr4:103422486-103538459:+,nuclear_factor_kappa_B_subunit_1	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RCC1--UBB	2	0	RCC1	2175	chr1:28834672:+	UBB	19982	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,UBB->chr17:16284112-16286059:+,ubiquitin_B	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-51F16.8--VIM	2	0	RP11-51F16.8	8921	chr17:61783995:-	VIM	20439	chr10:17277168:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RP11-51F16.8->chr17:61780205-61829457:-,VIM->chr10:17270258-17279592:+,vimentin	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	TMTC2--CORO1C	2	0	TMTC2	1790	chr12:83081448:+	CORO1C	28437	chr12:109095099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	YEATS4--LYZ	2	0	YEATS4	7243	chr12:69764755:+	LYZ	13098	chr12:69743888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:+:[5469],YEATS4->YEATS_domain_containing_4,chr12:69753483-69784576:+,LYZ->chr12:69742121-69748014:+,lysozyme	NCIH446_LUNG	1	1	0.0211	TRUE	0	7	0	3	6	TRUE	ACH-000800
NCIH446_LUNG	RP11-307P5.1--SASH1	1	1	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0106	0.0106	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH446_LUNG	0.67	1	0.0212	TRUE	0	0	0	16	0	TRUE	ACH-000800
OVSAHO_OVARY	PXMP4--RBM39	174	57	PXMP4	1225	chr20:32307901:-	RBM39	16813	chr20:34320057:-	ONLY_REF_SPLICE	YES	48	954	0.83	0.19	2.1116	0.6917	{Klijn_CCL:Ovary=1},PXMP4->chr20:32294512-32308125:-,peroxisomal_membrane_protein_4,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	OVSAHO_OVARY	0.19	0.83	2.8033	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ASCC1--MICU1	103	54	ASCC1	10097	chr10:73956569:-	MICU1	41007	chr10:74183129:-	ONLY_REF_SPLICE	YES	139	126	0.53	0.55	1.25	0.6553	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	OVSAHO_OVARY	0.53	0.55	1.9053	TRUE	0	1	0	1	1	TRUE	ACH-000409
OVSAHO_OVARY	ELL--DDX1	99	47	ELL	1207	chr19:18632731:-	DDX1	19571	chr2:15731778:+	ONLY_REF_SPLICE	YES	53	2	0.73	0.99	1.2014	0.5704	ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	OVSAHO_OVARY	0.73	0.99	1.7718	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	CTD-2314B22.3--RP11-536C10.19	97	9	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	24	0	0.82	1	1.1772	0.1092	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	OVSAHO_OVARY	0.82	1	1.2864	TRUE	0	2	0	9	2	TRUE	ACH-000409
OVSAHO_OVARY	TMEM120B--WDR66	63	38	TMEM120B	1213	chr12:122150870:+	WDR66	30007	chr12:122380440:+	ONLY_REF_SPLICE	YES	19	2	0.84	0.98	0.7646	0.4612	{Klijn_CCL:Ovary=1},TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,WDR66->WD_repeat_domain_66,chr12:122355768-122441833:+	OVSAHO_OVARY	0.84	0.98	1.2258	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	PLEC--TONSL	57	25	PLEC	25438	chr8:145000952:-	TONSL	53188	chr8:145655920:-	ONLY_REF_SPLICE	YES	55	77	0.6	0.52	0.6917	0.3034	PLEC->chr8:144989321-145050902:-,plectin,TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein	OVSAHO_OVARY	0.52	0.6	0.9951	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ELL--RP11-420K14.8	59	13	ELL	1207	chr19:18632731:-	RP11-420K14.8	21660	chr19:21951929:-	ONLY_REF_SPLICE	YES	53	0	0.58	1	0.716	0.1578	ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,RP11-420K14.8->chr19:21951574-21976662:-	OVSAHO_OVARY	0.58	1	0.8738	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ECT2--FNDC3B	50	19	ECT2	20761	chr3:172523659:+	FNDC3B	70390	chr3:172114954:+	ONLY_REF_SPLICE	YES	182	43	0.27	0.62	0.6068	0.2306	ECT2->Oncogene{Bushman},chr3:172468472-172539264:+,epithelial_cell_transforming_2,FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B	OVSAHO_OVARY	0.27	0.62	0.8374	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	40	26	MKL1	3549	chr22:40948110:-	GNB1L	24759	chr22:19808898:-	ONLY_REF_SPLICE	YES	1	15	0.99	0.81	0.4854	0.3155	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.81	0.99	0.8009	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	PIGU--FER1L4	38	20	PIGU	14187	chr20:33162908:-	FER1L4	39128	chr20:34153143:-	ONLY_REF_SPLICE	YES	376	0	0.13	1	0.4612	0.2427	PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,FER1L4->chr20:34146507-34195484:-,fer-1_like_family_member_4,_pseudogene	OVSAHO_OVARY	0.13	1	0.7039	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	RNF8--RAB44	40	10	RNF8	3593	chr6:37328350:+	RAB44	28970	chr6:36696477:+	ONLY_REF_SPLICE	YES	56	5	0.47	0.91	0.4854	0.1214	RNF8->chr6:37321748-37362514:+,ring_finger_protein_8,RAB44->RAB44,_member_RAS_oncogene_family,chr6:36683256-36699870:+	OVSAHO_OVARY	0.47	0.91	0.6068	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	UGGT1--MYO7B	36	13	UGGT1	19665	chr2:128900679:+	MYO7B	77813	chr2:128369825:+	INCL_NON_REF_SPLICE	YES	22	0	0.69	1	0.4369	0.1578	UGGT1->UDP-glucose_glycoprotein_glucosyltransferase_1,chr2:128848774-128953251:+,MYO7B->chr2:128293378-128395304:+,myosin_VIIB	OVSAHO_OVARY	0.69	1	0.5947	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	UBE2D3--SLC9B1	31	6	UBE2D3	3857	chr4:103747642:-	SLC9B1	24377	chr4:103912869:-	ONLY_REF_SPLICE	YES	265	1	0.12	0.97	0.3762	0.0728	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[16152],UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	OVSAHO_OVARY	0.12	0.97	0.449	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	RP11-1407O15.2--PIP4K2B	30	4	RP11-1407O15.2	5790	chr17:36375100:-	PIP4K2B	35211	chr17:36936857:-	ONLY_REF_SPLICE	YES	67	31	0.34	0.52	0.3641	0.0485	RP11-1407O15.2->chr17:36337717-36421858:-,PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta	OVSAHO_OVARY	0.34	0.52	0.4126	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	FDXR--GARNL3	24	6	FDXR	1996	chr17:72868161:-	GARNL3	21016	chr9:130073915:+	ONLY_REF_SPLICE	YES	33	0	0.48	1	0.2913	0.0728	{Klijn_CCL:Ovary=1},FDXR->chr17:72858619-72869156:-,ferredoxin_reductase,GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+	OVSAHO_OVARY	0.48	1	0.3641	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ARID1A--RP1-153P14.8	22	6	ARID1A	7728	chr1:27059283:+	RP1-153P14.8	27821	chr6:37502052:+	ONLY_REF_SPLICE	YES	19	0	0.6	1	0.267	0.0728	ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,RP1-153P14.8->chr6:37475124-37503392:+	OVSAHO_OVARY	0.6	1	0.3398	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	RALGPS1--ENG	20	10	RALGPS1	4984	chr9:129740024:+	ENG	41275	chr9:130592106:-	ONLY_REF_SPLICE	YES	1	1	0.97	0.97	0.2427	0.1214	{Klijn_CCL:Ovary=1},RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+,ENG->chr9:130577291-130617035:-,endoglin	OVSAHO_OVARY	0.97	0.97	0.3641	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	C7orf50--PIP4K2B	18	13	C7orf50	3078	chr7:1166893:-	PIP4K2B	23250	chr17:36935782:-	ONLY_REF_SPLICE	YES	56	40	0.36	0.44	0.2184	0.1578	{Klijn_CCL:Ovary=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta	OVSAHO_OVARY	0.36	0.44	0.3762	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	12	31	MKL1	3549	chr22:40948110:-	GNB1L	23662	chr22:19842062:-	ONLY_REF_SPLICE	YES	1	13	0.98	0.77	0.1456	0.3762	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.77	0.98	0.5218	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	AP000525.9--LA16c-60G3.6	19	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2306	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	OVSAHO_OVARY	1	1	0.2306	TRUE	0	5	0	18	5	TRUE	ACH-000409
OVSAHO_OVARY	PXMP4--RBM39	4	57	PXMP4	1229	chr20:32307897:-	RBM39	16816	chr20:34320054:-	INCL_NON_REF_SPLICE	YES	51	913	0.54	0.06	0.0485	0.6917	{Klijn_CCL:Ovary=1},PXMP4->chr20:32294512-32308125:-,peroxisomal_membrane_protein_4,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	OVSAHO_OVARY	0.06	0.54	0.7402	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	SCMH1--FMNL1	15	7	SCMH1	12062	chr1:41578948:-	FMNL1	33656	chr17:43313501:+	INCL_NON_REF_SPLICE	YES	32	2	0.41	0.92	0.182	0.085	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),FMNL1->chr17:43298811-43324687:+,formin_like_1	OVSAHO_OVARY	0.41	0.92	0.267	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	UGGT1--MYO7B	13	13	UGGT1	19727	chr2:128900741:+	MYO7B	77813	chr2:128369825:+	INCL_NON_REF_SPLICE	YES	32	0	0.45	1	0.1578	0.1578	UGGT1->UDP-glucose_glycoprotein_glucosyltransferase_1,chr2:128848774-128953251:+,MYO7B->chr2:128293378-128395304:+,myosin_VIIB	OVSAHO_OVARY	0.45	1	0.3156	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	UGGT1--MYO7B	11	13	UGGT1	19701	chr2:128900715:+	MYO7B	77813	chr2:128369825:+	INCL_NON_REF_SPLICE	YES	28	0	0.46	1	0.1335	0.1578	UGGT1->UDP-glucose_glycoprotein_glucosyltransferase_1,chr2:128848774-128953251:+,MYO7B->chr2:128293378-128395304:+,myosin_VIIB	OVSAHO_OVARY	0.46	1	0.2913	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	AL589743.1--RP11-536C10.17	11	12	AL589743.1	9393	chr14:19680685:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	476	0	0.05	1	0.1335	0.1456	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	OVSAHO_OVARY	0.05	1	0.2791	TRUE	0	8	0	6	8	TRUE	ACH-000409
OVSAHO_OVARY	AP000525.9--LA16c-60G3.6	11	9	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	72	0	0.22	1	0.1335	0.1092	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	OVSAHO_OVARY	0.22	1	0.2427	TRUE	0	8	0	10	8	TRUE	ACH-000409
OVSAHO_OVARY	CTD-2314B22.3--RP11-536C10.19	11	9	CTD-2314B22.3	9273	chr14:19894700:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	489	0	0.04	1	0.1335	0.1092	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	OVSAHO_OVARY	0.04	1	0.2427	TRUE	0	1	0	4	1	TRUE	ACH-000409
OVSAHO_OVARY	TMEM205--RPS28	11	0	TMEM205	3471	chr19:11453607:-	RPS28	6969	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0	TMEM205->chr19:11453452-11457194:-,transmembrane_protein_205,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OVSAHO_OVARY	1	1	0.1335	TRUE	0	1	0	3	1	TRUE	ACH-000409
OVSAHO_OVARY	TMEM120B--WDR66	6	19	TMEM120B	1213	chr12:122150870:+	WDR66	30368	chr12:122380801:+	ONLY_REF_SPLICE	YES	19	7	0.57	0.78	0.0728	0.2306	{Klijn_CCL:Ovary=1},TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,WDR66->WD_repeat_domain_66,chr12:122355768-122441833:+	OVSAHO_OVARY	0.57	0.78	0.3034	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	2	31	MKL1	5920	chr22:40915468:-	GNB1L	23662	chr22:19842062:-	ONLY_REF_SPLICE	YES	1	13	0.97	0.72	0.0243	0.3762	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.72	0.97	0.4005	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	PPAP2A--RP11-195E2.1	9	2	PPAP2A	1479	chr5:54830400:-	RP11-195E2.1	16080	chr5:70372179:-	ONLY_REF_SPLICE	YES	16	10	0.41	0.52	0.1092	0.0243	PPAP2A->chr5:54720682-54830878:-,RP11-195E2.1->chr5:70370052-70389020:-	OVSAHO_OVARY	0.41	0.52	0.1335	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	RNF8--RAB44	6	14	RNF8	3593	chr6:37328350:+	RAB44	25352	chr6:36690090:+	INCL_NON_REF_SPLICE	YES	56	0	0.26	1	0.0728	0.1699	RNF8->chr6:37321748-37362514:+,ring_finger_protein_8,RAB44->RAB44,_member_RAS_oncogene_family,chr6:36683256-36699870:+	OVSAHO_OVARY	0.26	1	0.2427	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	PCNX--RAD51B	7	5	PCNX	11592	chr14:71445365:+	RAD51B	87172	chr14:69061202:+	ONLY_REF_SPLICE	YES	11	4	0.52	0.75	0.085	0.0607	PCNX->chr14:71374122-71582099:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	OVSAHO_OVARY	0.52	0.75	0.1457	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	6	8	MKL1	3549	chr22:40948110:-	GNB1L	26537	chr22:19799970:-	ONLY_REF_SPLICE	YES	1	38	0.93	0.27	0.0728	0.0971	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.27	0.93	0.1699	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	RNF8--RAB44	4	15	RNF8	3593	chr6:37328350:+	RAB44	24190	chr6:36688928:+	ONLY_REF_SPLICE	YES	56	0	0.25	1	0.0485	0.182	RNF8->chr6:37321748-37362514:+,ring_finger_protein_8,RAB44->RAB44,_member_RAS_oncogene_family,chr6:36683256-36699870:+	OVSAHO_OVARY	0.25	1	0.2305	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	1	26	MKL1	5920	chr22:40915468:-	GNB1L	24759	chr22:19808898:-	ONLY_REF_SPLICE	YES	1	15	0.96	0.64	0.0121	0.3155	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.64	0.96	0.3276	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	UBE2D2--PJA2	7	2	UBE2D2	2832	chr5:138941400:+	PJA2	15847	chr5:108719221:-	ONLY_REF_SPLICE	YES	37	58	0.2	0.13	0.085	0.0243	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,PJA2->chr5:108670410-108745695:-,praja_ring_finger_ubiquitin_ligase_2	OVSAHO_OVARY	0.13	0.2	0.1093	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ELL--RP11-420K14.8	3	17	ELL	2327	chr19:18586624:-	RP11-420K14.8	20592	chr19:21971749:-	INCL_NON_REF_SPLICE	YES	66	0	0.23	1	0.0364	0.2063	ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,RP11-420K14.8->chr19:21951574-21976662:-	OVSAHO_OVARY	0.23	1	0.2427	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ELL--RP11-420K14.8	4	13	ELL	1207	chr19:18632731:-	RP11-420K14.8	20592	chr19:21971749:-	INCL_NON_REF_SPLICE	YES	53	0	0.24	1	0.0485	0.1578	ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,RP11-420K14.8->chr19:21951574-21976662:-	OVSAHO_OVARY	0.24	1	0.2063	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MTPAP--KIAA1462	5	2	MTPAP	8944	chr10:30638048:-	KIAA1462	26070	chr10:30358750:-	ONLY_REF_SPLICE	YES	18	0	0.28	1	0.0607	0.0243	MTPAP->chr10:30598730-30663377:-,mitochondrial_poly(A)_polymerase,KIAA1462->KIAA1462,chr10:30301729-30404423:-	OVSAHO_OVARY	0.28	1	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ELL--RP11-420K14.8	1	16	ELL	2327	chr19:18586624:-	RP11-420K14.8	21660	chr19:21951929:-	ONLY_REF_SPLICE	YES	66	0	0.2	1	0.0121	0.1942	ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,RP11-420K14.8->chr19:21951574-21976662:-	OVSAHO_OVARY	0.2	1	0.2063	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	PCNX--RAD51B	4	0	PCNX	11592	chr14:71445365:+	RAD51B	92320	chr14:69149654:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0485	0	PCNX->chr14:71374122-71582099:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	OVSAHO_OVARY	1	1	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	PCNX--RAD51B	4	0	PCNX	11592	chr14:71445365:+	RAD51B	89684	chr14:69077723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0485	0	PCNX->chr14:71374122-71582099:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	OVSAHO_OVARY	1	1	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	PCNX--RAD51B	4	0	PCNX	11592	chr14:71445365:+	RAD51B	93555	chr14:69196525:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0485	0	PCNX->chr14:71374122-71582099:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	OVSAHO_OVARY	1	1	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	RNF8--RAB44	1	11	RNF8	3593	chr6:37328350:+	RAB44	26773	chr6:36693639:+	ONLY_REF_SPLICE	YES	56	4	0.18	0.75	0.0121	0.1335	RNF8->chr6:37321748-37362514:+,ring_finger_protein_8,RAB44->RAB44,_member_RAS_oncogene_family,chr6:36683256-36699870:+	OVSAHO_OVARY	0.18	0.75	0.1456	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	FTH1--RPS28	3	0	FTH1	1228	chr11:61734905:-	RPS28	8539	chr19:8386405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	GTEx&tcga_normals:1/3694=0.03%,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OVSAHO_OVARY	1	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	KLHL26--FKBP8	3	0	KLHL26	1173	chr19:18747947:+	FKBP8	13665	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_INVERSION:+:-:[92888],KLHL26->chr19:18747775-18781309:+,kelch_like_family_member_26,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	OVSAHO_OVARY	1	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	1	8	MKL1	5920	chr22:40915468:-	GNB1L	26537	chr22:19799970:-	ONLY_REF_SPLICE	NO	1	38	0.9	0.19	0.0121	0.0971	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.19	0.9	0.1092	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	TMEM120B--WDR66	1	5	TMEM120B	1213	chr12:122150870:+	WDR66	32764	chr12:122386890:+	ONLY_REF_SPLICE	YES	19	18	0.24	0.25	0.0121	0.0607	{Klijn_CCL:Ovary=1},TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,WDR66->WD_repeat_domain_66,chr12:122355768-122441833:+	OVSAHO_OVARY	0.24	0.25	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ESR1--MTHFD1L	2	0	ESR1	11300	chr6:152163922:+	MTHFD1L	58368	chr6:151330955:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	OVSAHO_OVARY	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	SHISA5--MAP4	2	0	SHISA5	4663	chr3:48538570:-	MAP4	17477	chr3:48040369:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	SHISA5->chr3:48509197-48542259:-,shisa_family_member_5,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	OVSAHO_OVARY	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ANKRD7--ST7	1	3	ANKRD7	4659	chr7:117874599:+	ST7	21907	chr7:116739816:+	ONLY_REF_SPLICE	YES	3	87	0.57	0.04	0.0121	0.0364	ANKRD7->ankyrin_repeat_domain_7,chr7:117854727-117882785:+,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	OVSAHO_OVARY	0.04	0.57	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ANKRD7--ST7	1	3	ANKRD7	4659	chr7:117874599:+	ST7	22990	chr7:116759615:+	ONLY_REF_SPLICE	YES	3	94	0.57	0.04	0.0121	0.0364	ANKRD7->ankyrin_repeat_domain_7,chr7:117854727-117882785:+,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	OVSAHO_OVARY	0.04	0.57	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ANKRD7--ST7	1	3	ANKRD7	1132	chr7:117854858:+	ST7	21907	chr7:116739816:+	ONLY_REF_SPLICE	YES	6	87	0.4	0.04	0.0121	0.0364	ANKRD7->ankyrin_repeat_domain_7,chr7:117854727-117882785:+,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	OVSAHO_OVARY	0.04	0.4	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ANKRD7--ST7	1	3	ANKRD7	1132	chr7:117854858:+	ST7	20758	chr7:116738667:+	ONLY_REF_SPLICE	YES	6	92	0.4	0.04	0.0121	0.0364	ANKRD7->ankyrin_repeat_domain_7,chr7:117854727-117882785:+,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	OVSAHO_OVARY	0.04	0.4	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	1	2	MKL1	3549	chr22:40948110:-	GNB1L	27700	chr22:19794280:-	ONLY_REF_SPLICE	YES	1	46	0.75	0.06	0.0121	0.0243	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.06	0.75	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000409
CAL148_BREAST	PTMA--PTMS	466	10	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	5612	685	0.08	0.41	3.3076	0.071	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0.08	0.41	3.3786	TRUE	0	0	0	16	0	TRUE	ACH-000902
CAL148_BREAST	CENPP--CCSER1	32	6	CENPP	6079	chr9:95142141:+	CCSER1	46238	chr4:91844521:+	ONLY_REF_SPLICE	YES	3	1	0.93	0.97	0.2271	0.0426	GTEx&tcga_normals:1/3694=0.03%,CENPP->centromere_protein_P,chr9:95087766-95382815:+,CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1	CAL148_BREAST	0.93	0.97	0.2697	TRUE	0	0	0	1	0	TRUE	ACH-000902
CAL148_BREAST	PTMA--PTMS	9	0	PTMA	6002	chr2:232576635:+	PTMS	13746	chr12:6879111:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	1	1	0.0639	TRUE	0	0	0	16	0	TRUE	ACH-000902
CAL148_BREAST	RP11-1379J22.5--UBE2D2	5	2	RP11-1379J22.5	1720	chr5:179085482:+	UBE2D2	10384	chr5:138979957:+	ONLY_REF_SPLICE	YES	9	95	0.44	0.07	0.0355	0.0142	RP11-1379J22.5->chr5:179084763-179091433:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	CAL148_BREAST	0.07	0.44	0.0497	TRUE	0	5	0	5	2	TRUE	ACH-000902
CAL148_BREAST	RP11-1379J22.5--MAZ	5	0	RP11-1379J22.5	1720	chr5:179085482:+	MAZ	9084	chr16:29819551:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	RP11-1379J22.5->chr5:179084763-179091433:+,MAZ->MYC_associated_zinc_finger_protein,chr16:29817427-29823649:+	CAL148_BREAST	1	1	0.0355	TRUE	0	0	0	2	0	TRUE	ACH-000902
CAL148_BREAST	PTMA--PTMS	4	0	PTMA	2857	chr2:232573461:+	PTMS	13404	chr12:6878769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	1	1	0.0284	TRUE	0	0	0	2	0	TRUE	ACH-000902
CAL148_BREAST	SBK1--RPS28	3	0	SBK1	2907	chr16:28328830:+	RPS28	12213	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0	SBK1->SH3_domain_binding_kinase_1,chr16:28303840-28335170:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CAL148_BREAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000902
CAL148_BREAST	CENPP--CCSER1	2	1	CENPP	6079	chr9:95142141:+	CCSER1	47399	chr4:91859827:+	ONLY_REF_SPLICE	YES	3	1	0.5	0.75	0.0142	0.0071	GTEx&tcga_normals:1/3694=0.03%,CENPP->centromere_protein_P,chr9:95087766-95382815:+,CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1	CAL148_BREAST	0.5	0.75	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000902
CAL148_BREAST	PTMA--PTMS	2	0	PTMA	6593	chr2:232577226:+	PTMS	14193	chr12:6879558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0142	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	1	1	0.0142	TRUE	0	0	0	16	0	TRUE	ACH-000902
LUDLU1_LUNG	FRMD8--SLC25A45	46	24	FRMD8	2831	chr11:65156999:+	SLC25A45	16658	chr11:65150042:-	ONLY_REF_SPLICE	YES	50	0	0.58	1	0.711	0.3709	LOCAL_INVERSION:+:-:[2898],FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+,SLC25A45->chr11:65142663-65151172:-,solute_carrier_family_25_member_45	LUDLU1_LUNG	0.58	1	1.0819	TRUE	0	0	0	1	0	TRUE	ACH-000390
LUDLU1_LUNG	SLC7A5--ATP5G2	5	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	LUDLU1_LUNG	1	1	0.0773	TRUE	0	0	0	7	0	TRUE	ACH-000390
LUDLU1_LUNG	MGST1--RPS27A	3	0	MGST1	5873	chr12:16507204:+	RPS27A	25404	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	LUDLU1_LUNG	1	1	0.0464	TRUE	0	0	0	2	0	TRUE	ACH-000390
LUDLU1_LUNG	DPH6--SCG5	2	0	DPH6	9984	chr15:35742886:-	SCG5	28675	chr15:32971967:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	DPH6->chr15:35509546-35838394:-,diphthamine_biosynthesis_6,SCG5->chr15:32933877-32989299:+,secretogranin_V	LUDLU1_LUNG	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000390
LUDLU1_LUNG	RP11-849F2.7--UBQLN1	2	0	RP11-849F2.7	3186	chr17:8283114:-	UBQLN1	17709	chr9:86292876:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	RP11-849F2.7->chr17:8271956-8286505:-,UBQLN1->chr9:86274878-86323118:-,ubiquilin_1	LUDLU1_LUNG	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000390
LUDLU1_LUNG	PLCB4--PREX1	1	1	PLCB4	4901	chr20:9198099:+	PREX1	48626	chr20:47364417:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0155	0.0155	PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1	LUDLU1_LUNG	0.67	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000390
TCCSUP_URINARY_TRACT	BAZ2A--NACA	31	24	BAZ2A	3376	chr12:57023909:-	NACA	38221	chr12:57108471:-	ONLY_REF_SPLICE	YES	35	856	0.61	0.06	0.436	0.3376	LOCAL_REARRANGEMENT:-:[75612],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,NACA->Oncogene{Bushman},chr12:57106212-57125412:-,nascent_polypeptide-associated_complex_alpha_subunit	TCCSUP_URINARY_TRACT	0.06	0.61	0.7736	TRUE	0	1	0	1	1	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	BAZ2A--NACA	28	10	BAZ2A	2725	chr12:57024560:-	NACA	38221	chr12:57108471:-	ONLY_REF_SPLICE	YES	16	856	0.7	0.04	0.3938	0.1406	LOCAL_REARRANGEMENT:-:[75612],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,NACA->Oncogene{Bushman},chr12:57106212-57125412:-,nascent_polypeptide-associated_complex_alpha_subunit	TCCSUP_URINARY_TRACT	0.04	0.7	0.5344	TRUE	0	1	0	1	1	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	PHTF2--CCDC146	26	10	PHTF2	2338	chr7:77469617:+	CCDC146	52331	chr7:76958713:+	ONLY_REF_SPLICE	YES	30	0	0.55	1	0.3657	0.1406	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	TCCSUP_URINARY_TRACT	0.55	1	0.5063	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	NDST2--CAMK2G	18	3	NDST2	9551	chr10:75562432:-	CAMK2G	24510	chr10:75597269:-	ONLY_REF_SPLICE	YES	20	38	0.51	0.36	0.2532	0.0422	LOCAL_REARRANGEMENT:-:[670],NDST2->N-deacetylase/N-sulfotransferase_2,chr10:75561669-75571589:-,CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-	TCCSUP_URINARY_TRACT	0.36	0.51	0.2954	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	WDR55--IK	9	4	WDR55	1428	chr5:140044688:+	IK	18126	chr5:140033523:+	ONLY_REF_SPLICE	YES	60	271	0.18	0.05	0.1266	0.0563	LOCAL_REARRANGEMENT:+:[2197],WDR55->WD_repeat_domain_55,chr5:140044261-140053709:+,IK->IK_cytokine,_down-regulator_of_HLA_II,chr5:140026643-140042064:+	TCCSUP_URINARY_TRACT	0.05	0.18	0.1829	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	ATP9B--ABHD3	8	4	ATP9B	13812	chr18:76914555:+	ABHD3	63870	chr18:19237113:-	ONLY_REF_SPLICE	YES	8	41	0.6	0.23	0.1125	0.0563	GTEx&tcga_normals:1/3694=0.03%,ATP9B->ATPase_phospholipid_transporting_9B_(putative),chr18:76829285-77138283:+,ABHD3->abhydrolase_domain_containing_3,chr18:19230858-19284766:-	TCCSUP_URINARY_TRACT	0.23	0.6	0.1688	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	NDST2--CAMK2G	5	6	NDST2	9551	chr10:75562432:-	CAMK2G	23447	chr10:75599359:-	ONLY_REF_SPLICE	YES	20	41	0.35	0.21	0.0703	0.0844	LOCAL_REARRANGEMENT:-:[670],NDST2->N-deacetylase/N-sulfotransferase_2,chr10:75561669-75571589:-,CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-	TCCSUP_URINARY_TRACT	0.21	0.35	0.1547	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	CIRBP--ATP5D	5	0	CIRBP	7559	chr19:1269409:+	ATP5D	18377	chr19:1244096:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0703	0	LOCAL_REARRANGEMENT:+:[14560],CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein,ATP5D->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_delta_subunit,chr19:1241749-1244824:+	TCCSUP_URINARY_TRACT	1	1	0.0703	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	CNOT2--ATF5	3	0	CNOT2	2192	chr12:70637965:+	ATF5	39053	chr19:50435954:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,ATF5->Oncogene{Bushman},activating_transcription_factor_5,chr19:50431959-50437192:+	TCCSUP_URINARY_TRACT	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	AP003900.6--AC011718.2	1	4	AP003900.6	2187	chr21:11172043:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0141	0.0563	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	TCCSUP_URINARY_TRACT	1	1	0.0704	TRUE	0	0	0	5	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	CCAT1--CASC8	2	0	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	TCCSUP_URINARY_TRACT	1	1	0.0281	TRUE	0	26	0	18	24	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	CD44--BBS9	2	0	CD44	1501	chr11:35160917:+	BBS9	36984	chr7:33217090:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,BBS9->Bardet-Biedl_syndrome_9,chr7:33168856-33645680:+	TCCSUP_URINARY_TRACT	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	GAS6--TFDP1	2	0	GAS6	1499	chr13:114566548:-	TFDP1	22838	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_Transformed_fibroblasts=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	TCCSUP_URINARY_TRACT	1	1	0.0281	TRUE	0	1	0	5	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	SMARCA5--GAB1	2	0	SMARCA5	4982	chr4:144445620:+	GAB1	46560	chr4:144380538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	LOCAL_REARRANGEMENT:+:[38895],SMARCA5->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_5,chr4:144434616-144478639:+,GAB1->GRB2_associated_binding_protein_1,Oncogene{Bushman},chr4:144257915-144395721:+	TCCSUP_URINARY_TRACT	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	TEK--IFT74	2	0	TEK	12419	chr9:27192621:+	IFT74	51715	chr9:27055607:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},LOCAL_REARRANGEMENT:+:[46211],TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+,IFT74->chr9:26947037-27062928:+,intraflagellar_transport_74	TCCSUP_URINARY_TRACT	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	TRIM22--EIF4ENIF1	2	0	TRIM22	8238	chr11:5729833:+	EIF4ENIF1	36532	chr22:31839080:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	TRIM22->chr11:5710919-5758319:+,tripartite_motif_containing_22,EIF4ENIF1->chr22:31832963-31892094:-,eukaryotic_translation_initiation_factor_4E_nuclear_import_factor_1	TCCSUP_URINARY_TRACT	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000720
SW948_LARGE_INTESTINE	ZBTB5--UNC13B	19	13	ZBTB5	1185	chr9:37465212:-	UNC13B	42117	chr9:35403164:+	ONLY_REF_SPLICE	YES	27	168	0.54	0.16	0.2611	0.1787	ZBTB5->chr9:37438111-37465396:-,zinc_finger_and_BTB_domain_containing_5,UNC13B->chr9:35161999-35405335:+,unc-13_homolog_B_(C._elegans)	SW948_LARGE_INTESTINE	0.16	0.54	0.4398	TRUE	0	0	0	1	0	TRUE	ACH-000680
SW948_LARGE_INTESTINE	METTL16--UBB	6	0	METTL16	1133	chr17:2415053:-	UBB	26889	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0825	0	METTL16->chr17:2308856-2415185:-,methyltransferase_like_16,UBB->chr17:16284112-16286059:+,ubiquitin_B	SW948_LARGE_INTESTINE	1	1	0.0825	TRUE	0	0	0	1	0	TRUE	ACH-000680
SW948_LARGE_INTESTINE	AC073283.4--EPCAM	2	0	AC073283.4	1174	chr2:47572040:-	EPCAM	17191	chr2:47600602:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	SW948_LARGE_INTESTINE	1	1	0.0275	TRUE	0	1	0	1	0	TRUE	ACH-000680
SW948_LARGE_INTESTINE	CA5B--FAM210B	2	0	CA5B	8332	chrX:15782898:+	FAM210B	27382	chr20:54940143:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	CA5B->carbonic_anhydrase_5B,chrX:15706953-15805747:+,FAM210B->chr20:54933971-54943719:+,family_with_sequence_similarity_210_member_B	SW948_LARGE_INTESTINE	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000680
SW948_LARGE_INTESTINE	GAS6--TFDP1	2	0	GAS6	1499	chr13:114566548:-	TFDP1	22838	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_Transformed_fibroblasts=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	SW948_LARGE_INTESTINE	1	1	0.0275	TRUE	0	1	0	5	0	TRUE	ACH-000680
HCC2108_LUNG	AGO2--RP11-429J17.4	16	10	AGO2	16670	chr8:141557567:-	RP11-429J17.4	27489	chr8:144795177:-	ONLY_REF_SPLICE	YES	49	0	0.35	1	0.1814	0.1134	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,RP11-429J17.4->chr8:144791177-144795754:-	HCC2108_LUNG	0.35	1	0.2948	TRUE	0	0	0	1	0	TRUE	ACH-000314
HCC2108_LUNG	B3GNTL1--ARL4D	13	5	B3GNTL1	9993	chr17:80962991:-	ARL4D	25423	chr17:41477029:+	ONLY_REF_SPLICE	YES	40	15	0.31	0.55	0.1474	0.0567	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,ARL4D->ADP_ribosylation_factor_like_GTPase_4D,chr17:41476327-41478505:+	HCC2108_LUNG	0.31	0.55	0.2041	TRUE	0	0	0	1	0	TRUE	ACH-000314
HCC2108_LUNG	AGO2--RP11-429J17.4	6	11	AGO2	16670	chr8:141557567:-	RP11-429J17.4	27465	chr8:144795201:-	INCL_NON_REF_SPLICE	YES	49	0	0.26	1	0.068	0.1247	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,RP11-429J17.4->chr8:144791177-144795754:-	HCC2108_LUNG	0.26	1	0.1927	TRUE	0	0	0	1	0	TRUE	ACH-000314
HCC2108_LUNG	AGO2--RP11-429J17.4	5	2	AGO2	16670	chr8:141557567:-	RP11-429J17.4	28563	chr8:144791339:-	ONLY_REF_SPLICE	YES	49	0	0.12	1	0.0567	0.0227	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,RP11-429J17.4->chr8:144791177-144795754:-	HCC2108_LUNG	0.12	1	0.0794	TRUE	0	0	0	1	0	TRUE	ACH-000314
HCC2108_LUNG	PTMA--PTMS	3	0	PTMA	5448	chr2:232576081:+	PTMS	13428	chr12:6878793:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	HCC2108_LUNG	1	1	0.034	TRUE	0	0	0	15	0	TRUE	ACH-000314
HCC2108_LUNG	SETD8--CDK2AP1	3	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	HCC2108_LUNG	1	1	0.034	TRUE	0	0	0	18	0	TRUE	ACH-000314
HCC2108_LUNG	ZNF664--EIF4E2	2	0	ZNF664	4564	chr12:124472685:+	EIF4E2	24605	chr2:233428957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZNF664->chr12:124456392-124499986:+,zinc_finger_protein_664,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	HCC2108_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000314
PK45H_PANCREAS	ZNF7--RP11-89K10.1	27	1	ZNF7	2627	chr8:146054475:+	RP11-89K10.1	28905	chr8:127725531:+	ONLY_REF_SPLICE	YES	9	2	0.76	0.93	0.2246	0.0083	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,RP11-89K10.1->chr8:127570120-127725660:+	PK45H_PANCREAS	0.76	0.93	0.2329	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	FHOD3--ZCCHC7	22	7	FHOD3	12456	chr18:34205712:+	ZCCHC7	48802	chr9:37302185:+	ONLY_REF_SPLICE	YES	12	17	0.71	0.63	0.183	0.0582	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	PK45H_PANCREAS	0.63	0.71	0.2412	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	UBE2M--CTC-360P9.4	12	1	UBE2M	2954	chr19:59068259:-	CTC-360P9.4	9345	chr19:32493678:-	ONLY_REF_SPLICE	YES	260	0	0.05	1	0.0998	0.0083	UBE2M->chr19:59067079-59070327:-,ubiquitin_conjugating_enzyme_E2_M,CTC-360P9.4->chr19:32458005-32516697:-	PK45H_PANCREAS	0.05	1	0.1081	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	TSC1--RABL5	8	0	TSC1	1062	chr9:135819959:-	RABL5	34422	chr7:100959823:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	TSC1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:135766735-135820020:-,tuberous_sclerosis_1,RABL5->chr7:100956975-100965104:-	PK45H_PANCREAS	1	1	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	TSC1--RABL5	6	0	TSC1	1091	chr9:135819930:-	RABL5	34422	chr7:100959823:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0499	0	TSC1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:135766735-135820020:-,tuberous_sclerosis_1,RABL5->chr7:100956975-100965104:-	PK45H_PANCREAS	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	CBX5--GNAS	4	0	CBX5	1095	chr12:54673792:-	GNAS	37563	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},CBX5->chr12:54624724-54673886:-,chromobox_5,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	PK45H_PANCREAS	1	1	0.0333	TRUE	0	1	0	3	1	TRUE	ACH-000468
PK45H_PANCREAS	ZNF7--RP11-89K10.1	4	0	ZNF7	1146	chr8:146052994:+	RP11-89K10.1	28905	chr8:127725531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,RP11-89K10.1->chr8:127570120-127725660:+	PK45H_PANCREAS	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	BRIP1--MED13	3	2	BRIP1	19565	chr17:59820374:-	MED13	35563	chr17:60112969:-	ONLY_REF_SPLICE	YES	22	28	0.19	0.15	0.025	0.0166	LOCAL_REARRANGEMENT:-:[79084],BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-,MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13	PK45H_PANCREAS	0.15	0.19	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	FHOD3--ZCCHC7	1	7	FHOD3	12456	chr18:34205712:+	ZCCHC7	49846	chr9:37304185:+	ONLY_REF_SPLICE	NO	12	30	0.4	0.21	0.0083	0.0582	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	PK45H_PANCREAS	0.21	0.4	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	ANKRD16--UCN3	2	0	ANKRD16	4103	chr10:5927686:-	UCN3	15056	chr10:5415678:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	ANKRD16->ankyrin_repeat_domain_16,chr10:5903580-5931869:-,UCN3->chr10:5406972-5416169:+,urocortin_3	PK45H_PANCREAS	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	CCND1--U2AF2	2	0	CCND1	1425	chr11:69456279:+	U2AF2	18977	chr19:56174972:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,U2AF2->U2_small_nuclear_RNA_auxiliary_factor_2,chr19:56165512-56186081:+	PK45H_PANCREAS	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	PK45H_PANCREAS	1	1	0.0166	TRUE	0	6	0	16	3	TRUE	ACH-000468
PK45H_PANCREAS	PRDX5--STIP1	2	0	PRDX5	1299	chr11:64085858:+	STIP1	9628	chr11:63960550:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	PRDX5->chr11:64085560-64089283:+,peroxiredoxin_5,STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1	PK45H_PANCREAS	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	RNF212--VEGFB	2	0	RNF212	3360	chr4:1101040:-	VEGFB	25471	chr11:64004659:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	RNF212->chr4:1050038-1107350:-,ring_finger_protein_212,VEGFB->chr11:64002010-64006259:+,vascular_endothelial_growth_factor_B	PK45H_PANCREAS	1	1	0.0166	TRUE	1	2	0	1	1	TRUE	ACH-000468
PK45H_PANCREAS	RPL23--MED14	2	0	RPL23	1822	chr17:37009275:-	MED14	37236	chrX:40518859:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23,MED14->chrX:40507558-40595110:-,mediator_complex_subunit_14	PK45H_PANCREAS	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	SENP2--TRA2B	2	0	SENP2	14349	chr3:185335399:+	TRA2B	37737	chr3:185641772:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	SENP2->SUMO1/sentrin/SMT3_specific_peptidase_2,chr3:185300284-185351339:+,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	PK45H_PANCREAS	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	TBCK--KANSL2	2	0	TBCK	37129	chr4:107037360:-	KANSL2	56557	chr12:49054402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-,KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-	PK45H_PANCREAS	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	FHOD3--ZCCHC7	1	2	FHOD3	12456	chr18:34205712:+	ZCCHC7	50972	chr9:37305541:+	ONLY_REF_SPLICE	NO	12	32	0.2	0.09	0.0083	0.0166	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	PK45H_PANCREAS	0.09	0.2	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	ATXN1--CTD-2410N18.5	1	1	ATXN1	11220	chr6:16658007:-	CTD-2410N18.5	34707	chr5:133509713:-	ONLY_REF_SPLICE	YES	10	6	0.17	0.25	0.0083	0.0083	ATXN1->ataxin_1,chr6:16299343-16761722:-,CTD-2410N18.5->chr5:133502861-133561762:-	PK45H_PANCREAS	0.17	0.25	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	DYNC1I1--JAZF1-AS1	1	1	DYNC1I1	10897	chr7:95499310:+	JAZF1-AS1	32168	chr7:28256862:+	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0083	0.0083	DYNC1I1->chr7:95401866-95739634:+,dynein_cytoplasmic_1_intermediate_chain_1,JAZF1-AS1->JAZF1_antisense_RNA_1,chr7:28219941-28283536:+	PK45H_PANCREAS	0.2	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	PHF17--SKIL	1	1	PHF17	1254	chr4:129731032:+	SKIL	27693	chr3:170077487:+	ONLY_REF_SPLICE	YES	14	18	0.12	0.1	0.0083	0.0083	PHF17->chr4:129730779-129796379:+,SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+	PK45H_PANCREAS	0.1	0.12	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	WWOX--VAT1L	1	1	WWOX	10605	chr16:78198186:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	22	0	0.08	1	0.0083	0.0083	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	PK45H_PANCREAS	0.08	1	0.0166	TRUE	0	0	0	6	0	TRUE	ACH-000468
RERFLCAI_LUNG	MAPRE1--BPI	137	26	MAPRE1	2260	chr20:31413854:+	BPI	25283	chr20:36946815:+	ONLY_REF_SPLICE	YES	397	0	0.29	1	1.4161	0.2687	MAPRE1->Oncogene{Bushman},chr20:31407699-31438211:+,microtubule_associated_protein_RP/EB_family_member_1,BPI->bactericidal/permeability-increasing_protein,chr20:36888551-36965907:+	RERFLCAI_LUNG	0.29	1	1.6848	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	RNF121--RP11-843A23.1	83	2	RNF121	1424	chr11:71640170:+	RP11-843A23.1	18218	chr11:78257555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.8579	0.0207	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,RP11-843A23.1->chr11:78244222-78269611:+	RERFLCAI_LUNG	1	1	0.8786	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	FOXP1--FAM188A	24	0	FOXP1	5088	chr3:71542577:-	FAM188A	64050	chr10:15824225:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2481	0	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,FAM188A->chr10:15820169-15902519:-,family_with_sequence_similarity_188_member_A	RERFLCAI_LUNG	1	1	0.2481	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	GATA4--CTD-2647L4.1	17	2	GATA4	7758	chr8:11566437:+	CTD-2647L4.1	21057	chr8:28997958:+	ONLY_REF_SPLICE	YES	3	5	0.86	0.79	0.1757	0.0207	GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+,CTD-2647L4.1->chr8:28968090-28998246:+	RERFLCAI_LUNG	0.79	0.86	0.1964	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	RNF121--RP11-843A23.1	17	0	RNF121	1424	chr11:71640170:+	RP11-843A23.1	19350	chr11:78266261:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1757	0	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,RP11-843A23.1->chr11:78244222-78269611:+	RERFLCAI_LUNG	1	1	0.1757	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	PGM2L1--FCHSD2	12	2	PGM2L1	5591	chr11:74079537:-	FCHSD2	28338	chr11:72726930:-	ONLY_REF_SPLICE	YES	2	20	0.88	0.41	0.124	0.0207	PGM2L1->chr11:74041363-74109518:-,phosphoglucomutase_2-like_1,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	RERFLCAI_LUNG	0.41	0.88	0.1447	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	MAPRE1--BPI	5	19	MAPRE1	2260	chr20:31413854:+	BPI	26744	chr20:36948585:+	ONLY_REF_SPLICE	YES	397	0	0.06	1	0.0517	0.1964	MAPRE1->Oncogene{Bushman},chr20:31407699-31438211:+,microtubule_associated_protein_RP/EB_family_member_1,BPI->bactericidal/permeability-increasing_protein,chr20:36888551-36965907:+	RERFLCAI_LUNG	0.06	1	0.2481	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	MTERFD2--CPS1	8	3	MTERFD2	11529	chr2:242028603:-	CPS1	22223	chr2:211384275:+	ONLY_REF_SPLICE	YES	15	0	0.42	1	0.0827	0.031	MTERFD2->chr2:242011584-242041747:-,CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+	RERFLCAI_LUNG	0.42	1	0.1137	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	ARHGAP10--EDNRA	4	1	ARHGAP10	1393	chr4:148653606:+	EDNRA	38515	chr4:148441003:+	ONLY_REF_SPLICE	YES	5	2	0.5	0.71	0.0413	0.0103	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	RERFLCAI_LUNG	0.5	0.71	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	GATA4--CTD-2647L4.1	4	1	GATA4	4565	chr8:11561813:+	CTD-2647L4.1	21057	chr8:28997958:+	ONLY_REF_SPLICE	YES	13	5	0.28	0.5	0.0413	0.0103	GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+,CTD-2647L4.1->chr8:28968090-28998246:+	RERFLCAI_LUNG	0.28	0.5	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	KAT6B--RP11-641D5.2	3	2	KAT6B	5638	chr10:76603236:+	RP11-641D5.2	35333	chr3:169187933:+	ONLY_REF_SPLICE	YES	17	0	0.23	1	0.031	0.0207	KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B,RP11-641D5.2->chr3:169165655-169194840:+	RERFLCAI_LUNG	0.23	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	FOXP1--FAM188A	3	0	FOXP1	5088	chr3:71542577:-	FAM188A	65122	chr10:15821140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,FAM188A->chr10:15820169-15902519:-,family_with_sequence_similarity_188_member_A	RERFLCAI_LUNG	1	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	CTPS1--KBTBD2	2	0	CTPS1	4956	chr1:41449128:+	KBTBD2	30869	chr7:32919554:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	CTPS1->CTP_synthase_1,chr1:41445007-41478235:+,KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2	RERFLCAI_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	MLLT6--MSH6	2	0	MLLT6	12141	chr17:36874206:+	MSH6	43723	chr2:48032757:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	MLLT6->Oncogene{Bushman},chr17:36861795-36886056:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_6,MSH6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47922669-48037240:+,mutS_homolog_6	RERFLCAI_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	TRADD--AKT2	2	0	TRADD	1461	chr16:67193741:-	AKT2	10125	chr19:40788683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	TRADD->TNFRSF1A_associated_via_death_domain,chr16:67188083-67194201:-,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	RERFLCAI_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	MAPRE1--BPI	1	1	MAPRE1	1136	chr20:31407834:+	BPI	25283	chr20:36946815:+	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0103	0.0103	MAPRE1->Oncogene{Bushman},chr20:31407699-31438211:+,microtubule_associated_protein_RP/EB_family_member_1,BPI->bactericidal/permeability-increasing_protein,chr20:36888551-36965907:+	RERFLCAI_LUNG	0.67	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000261
STM9101_SOFT_TISSUE	AGMO--MEOX2	222	259	AGMO	13591	chr7:15405139:-	MEOX2	24297	chr7:15652236:-	ONLY_REF_SPLICE	YES	24	1057	0.95	0.31	3.8933	4.5422	LOCAL_REARRANGEMENT:-:[49197],AGMO->alkylglycerol_monooxygenase,chr7:15239943-15601640:-,MEOX2->chr7:15650837-15726437:-,mesenchyme_homeobox_2	STM9101_SOFT_TISSUE	0.31	0.95	8.4355	TRUE	0	1	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	AC007319.1--GDI2	184	57	AC007319.1	1146	chr2:187868092:+	GDI2	24692	chr10:5808258:-	ONLY_REF_SPLICE	YES	0	175	1	0.58	3.2269	0.9996	AC007319.1->chr2:187867947-188419390:+,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	STM9101_SOFT_TISSUE	0.58	1	4.2265	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	TCF7L1--LRRTM4	67	52	TCF7L1	2041	chr2:85361573:+	LRRTM4	28781	chr2:76976042:-	ONLY_REF_SPLICE	YES	29	0	0.8	1	1.175	0.9119	TCF7L1->chr2:85360533-85537511:+,transcription_factor_7_like_1,LRRTM4->chr2:76974845-77820445:-,leucine_rich_repeat_transmembrane_neuronal_4	STM9101_SOFT_TISSUE	0.8	1	2.0869	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	AGMO--MEOX2	1	261	AGMO	13591	chr7:15405139:-	MEOX2	23124	chr7:15666543:-	ONLY_REF_SPLICE	YES	24	849	0.92	0.24	0.0175	4.5773	LOCAL_REARRANGEMENT:-:[49197],AGMO->alkylglycerol_monooxygenase,chr7:15239943-15601640:-,MEOX2->chr7:15650837-15726437:-,mesenchyme_homeobox_2	STM9101_SOFT_TISSUE	0.24	0.92	4.5948	TRUE	0	2	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	FGF2--IL21-AS1	56	24	FGF2	3835	chr4:123813451:+	IL21-AS1	13761	chr4:123541123:+	INCL_NON_REF_SPLICE	YES	112	0	0.42	1	0.9821	0.4209	FGF2->Oncogene{Bushman},chr4:123747863-123819391:+,fibroblast_growth_factor_2,IL21-AS1->IL21_antisense_RNA_1,chr4:123540138-123610311:+	STM9101_SOFT_TISSUE	0.42	1	1.403	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	IP6K1--UBA7	37	91	IP6K1	1189	chr3:49823787:-	UBA7	14675	chr3:49851375:-	INCL_NON_REF_SPLICE	YES	50	0	0.72	1	0.6489	1.5959	LOCAL_REARRANGEMENT:-:[18665],IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,UBA7->Oncogene{Bushman},chr3:49842640-49851379:-,ubiquitin_like_modifier_activating_enzyme_7	STM9101_SOFT_TISSUE	0.72	1	2.2448	TRUE	0	0	0	2	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	SYNPR--PTPRG	47	42	SYNPR	13042	chr3:63466632:+	PTPRG	61647	chr3:62278096:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.8243	0.7366	SYNPR->chr3:63213991-63602597:+,synaptoporin,PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G	STM9101_SOFT_TISSUE	1	1	1.5609	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	ATG5--RP11-98I9.4	25	18	ATG5	6052	chr6:106727536:-	RP11-98I9.4	15335	chr6:99873100:+	INCL_NON_REF_SPLICE	YES	33	6	0.57	0.88	0.4384	0.3157	ATG5->autophagy_related_5,chr6:106632351-106773666:-,RP11-98I9.4->chr6:99872798-99879249:+	STM9101_SOFT_TISSUE	0.57	0.88	0.7541	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	ZNF771--RP11-345J4.8	23	9	ZNF771	1898	chr16:30419515:+	RP11-345J4.8	13741	chr16:29577570:-	ONLY_REF_SPLICE	YES	3	6	0.91	0.84	0.4034	0.1578	ZNF771->chr16:30418618-30440920:+,zinc_finger_protein_771,RP11-345J4.8->chr16:29538889-29606395:-	STM9101_SOFT_TISSUE	0.84	0.91	0.5612	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	TCF7L1--LRRTM4	1	53	TCF7L1	7682	chr2:85461011:+	LRRTM4	28781	chr2:76976042:-	ONLY_REF_SPLICE	YES	30	0	0.64	1	0.0175	0.9295	TCF7L1->chr2:85360533-85537511:+,transcription_factor_7_like_1,LRRTM4->chr2:76974845-77820445:-,leucine_rich_repeat_transmembrane_neuronal_4	STM9101_SOFT_TISSUE	0.64	1	0.947	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	ATRNL1--TRUB1	10	7	ATRNL1	1679	chr10:116853802:+	TRUB1	47671	chr10:116702404:+	ONLY_REF_SPLICE	YES	9	173	0.65	0.09	0.1754	0.1228	ATRNL1->attractin_like_1,chr10:116853124-117708503:+,TRUB1->TruB_pseudouridine_synthase_family_member_1,chr10:116697952-116737430:+	STM9101_SOFT_TISSUE	0.09	0.65	0.2982	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	TIMELESS--BAZ2A	10	4	TIMELESS	8086	chr12:56822020:-	BAZ2A	23578	chr12:57009391:-	ONLY_REF_SPLICE	YES	58	24	0.19	0.37	0.1754	0.0701	TIMELESS->chr12:56810903-56843187:-,timeless_circadian_clock,BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-	STM9101_SOFT_TISSUE	0.19	0.37	0.2455	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	NAA15--NBEAP1	6	7	NAA15	1377	chr4:140222985:+	NBEAP1	37798	chr15:20876597:-	ONLY_REF_SPLICE	YES	74	1	0.15	0.93	0.1052	0.1228	NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+,NBEAP1->Oncogene{Bushman},chr15:20862967-20893737:-,neurobeachin_pseudogene_1	STM9101_SOFT_TISSUE	0.15	0.93	0.228	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	FGF2--IL21-AS1	4	13	FGF2	2749	chr4:123797579:+	IL21-AS1	13761	chr4:123541123:+	ONLY_REF_SPLICE	YES	112	0	0.13	1	0.0701	0.228	FGF2->Oncogene{Bushman},chr4:123747863-123819391:+,fibroblast_growth_factor_2,IL21-AS1->IL21_antisense_RNA_1,chr4:123540138-123610311:+	STM9101_SOFT_TISSUE	0.13	1	0.2981	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	CDK13--YAE1D1	5	1	CDK13	2816	chr7:39991451:+	YAE1D1	30211	chr7:39649216:+	ONLY_REF_SPLICE	YES	46	0	0.12	1	0.0877	0.0175	CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,YAE1D1->Yae1_domain_containing_1,chr7:39605975-39649919:+	STM9101_SOFT_TISSUE	0.12	1	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	ATG5--RP11-98I9.4	3	6	ATG5	6052	chr6:106727536:-	RP11-98I9.4	17010	chr6:99878589:+	ONLY_REF_SPLICE	YES	33	13	0.21	0.41	0.0526	0.1052	ATG5->autophagy_related_5,chr6:106632351-106773666:-,RP11-98I9.4->chr6:99872798-99879249:+	STM9101_SOFT_TISSUE	0.21	0.41	0.1578	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	ACIN1--SLC7A8	4	0	ACIN1	3818	chr14:23559731:-	SLC7A8	35899	chr14:23608756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0701	0	LOCAL_REARRANGEMENT:-:[29681],ACIN1->apoptotic_chromatin_condensation_inducer_1,chr14:23527773-23564823:-,SLC7A8->chr14:23594504-23652883:-,solute_carrier_family_7_member_8	STM9101_SOFT_TISSUE	1	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	SPRED1--RP11-1008C21.1	3	0	SPRED1	1892	chr15:38545418:+	RP11-1008C21.1	27349	chr15:38332197:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	SPRED1->chr15:38544527-38649450:+,sprouty_related_EVH1_domain_containing_1,RP11-1008C21.1->chr15:38276967-38354541:+	STM9101_SOFT_TISSUE	1	1	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	ATRNL1--TRUB1	1	7	ATRNL1	2874	chr10:116856596:+	TRUB1	47671	chr10:116702404:+	ONLY_REF_SPLICE	YES	11	173	0.42	0.04	0.0175	0.1228	ATRNL1->attractin_like_1,chr10:116853124-117708503:+,TRUB1->TruB_pseudouridine_synthase_family_member_1,chr10:116697952-116737430:+	STM9101_SOFT_TISSUE	0.04	0.42	0.1403	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	STM9101_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	10	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	MIR210HG--DNM3OS	2	0	MIR210HG	1106	chr11:568352:-	DNM3OS	7156	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	HGNC_GENEFAM,MIR210HG->MIR210_host_gene,chr11:565660-568457:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	STM9101_SOFT_TISSUE	1	1	0.0351	TRUE	0	2	0	3	2	TRUE	ACH-001200
SKMES1_LUNG	PPP1CC--HAUS7	134	51	PPP1CC	1287	chr12:111180458:-	HAUS7	23177	chrX:152722686:-	ONLY_REF_SPLICE	YES	105	72	0.64	0.72	1.6682	0.6349	PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma,HAUS7->HAUS_augmin_like_complex_subunit_7,chrX:152713124-152760978:-	SKMES1_LUNG	0.64	0.72	2.3031	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	IKBKG--OPN1MW2	96	88	IKBKG	1193	chrX:153769606:+	OPN1MW2	24990	chrX:153494297:+	ONLY_REF_SPLICE	YES	29	0	0.86	1	1.1951	1.0956	IKBKG->chrX:153769414-153796782:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma,OPN1MW2->chrX:153485225-153498755:+,opsin_1_(cone_pigments),_medium-wave-sensitive_2	SKMES1_LUNG	0.86	1	2.2907	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	IKBKG--OPN1MW2	53	139	IKBKG	2254	chrX:153770667:+	OPN1MW2	24990	chrX:153494297:+	ONLY_REF_SPLICE	YES	37	0	0.84	1	0.6598	1.7305	IKBKG->chrX:153769414-153796782:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma,OPN1MW2->chrX:153485225-153498755:+,opsin_1_(cone_pigments),_medium-wave-sensitive_2	SKMES1_LUNG	0.84	1	2.3903	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	IKBKG--OPN1MW2	11	115	IKBKG	2189	chrX:153770602:+	OPN1MW2	24990	chrX:153494297:+	ONLY_REF_SPLICE	YES	46	0	0.73	1	0.1369	1.4317	IKBKG->chrX:153769414-153796782:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma,OPN1MW2->chrX:153485225-153498755:+,opsin_1_(cone_pigments),_medium-wave-sensitive_2	SKMES1_LUNG	0.73	1	1.5686	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	WWOX--VAT1L	31	13	WWOX	10605	chr16:78198186:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	11	0	0.8	1	0.3859	0.1618	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	SKMES1_LUNG	0.8	1	0.5477	TRUE	0	0	0	6	0	TRUE	ACH-000665
SKMES1_LUNG	IKBKG--OPN1MW2	4	89	IKBKG	2083	chrX:153770496:+	OPN1MW2	24990	chrX:153494297:+	INCL_NON_REF_SPLICE	YES	39	0	0.7	1	0.0498	1.108	IKBKG->chrX:153769414-153796782:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma,OPN1MW2->chrX:153485225-153498755:+,opsin_1_(cone_pigments),_medium-wave-sensitive_2	SKMES1_LUNG	0.7	1	1.1578	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	PPIG--ROCK2	24	5	PPIG	1151	chr2:170441000:+	ROCK2	25459	chr2:11389924:-	ONLY_REF_SPLICE	YES	24	8	0.55	0.78	0.2988	0.0622	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-	SKMES1_LUNG	0.55	0.78	0.361	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	MRPL11--RP11-867G23.10	22	12	MRPL11	4325	chr11:66204821:-	RP11-867G23.10	12417	chr11:66184264:+	ONLY_REF_SPLICE	YES	176	0	0.16	1	0.2739	0.1494	LOCAL_INVERSION:-:+:[17938],MRPL11->chr11:66202546-66234209:-,mitochondrial_ribosomal_protein_L11,RP11-867G23.10->chr11:66176629-66184608:+	SKMES1_LUNG	0.16	1	0.4233	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	HDAC8--PHKA1	21	13	HDAC8	4154	chrX:71787739:-	PHKA1	40482	chrX:71846899:-	ONLY_REF_SPLICE	YES	107	56	0.24	0.38	0.2614	0.1618	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:-:[5711],HDAC8->chrX:71549366-71792953:-,histone_deacetylase_8,PHKA1->chrX:71798664-71934167:-,phosphorylase_kinase,_alpha_1_(muscle)	SKMES1_LUNG	0.24	0.38	0.4232	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	ZBTB20--LSAMP	19	7	ZBTB20	2150	chr3:114863660:-	LSAMP	53449	chr3:115571464:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.2365	0.0871	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	SKMES1_LUNG	0.96	1	0.3236	TRUE	0	3	0	1	3	TRUE	ACH-000665
SKMES1_LUNG	IKBKG--OPN1MW2	4	66	IKBKG	1188	chrX:153769601:+	OPN1MW2	24990	chrX:153494297:+	INCL_NON_REF_SPLICE	YES	27	0	0.72	1	0.0498	0.8217	IKBKG->chrX:153769414-153796782:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma,OPN1MW2->chrX:153485225-153498755:+,opsin_1_(cone_pigments),_medium-wave-sensitive_2	SKMES1_LUNG	0.72	1	0.8715	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	TXNRD1--CHST11	17	8	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	8	32	0.76	0.44	0.2116	0.0996	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	SKMES1_LUNG	0.44	0.76	0.3112	TRUE	0	2	1	13	2	TRUE	ACH-000665
SKMES1_LUNG	ZBTB20--LSAMP	12	2	ZBTB20	1053	chr3:114866066:-	LSAMP	53449	chr3:115571464:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1494	0.0249	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	SKMES1_LUNG	1	1	0.1743	TRUE	0	3	0	1	3	TRUE	ACH-000665
SKMES1_LUNG	IKBKG--OPN1MW2	3	33	IKBKG	2254	chrX:153770667:+	OPN1MW2	26156	chrX:153496017:+	ONLY_REF_SPLICE	YES	37	64	0.49	0.36	0.0373	0.4108	IKBKG->chrX:153769414-153796782:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma,OPN1MW2->chrX:153485225-153498755:+,opsin_1_(cone_pigments),_medium-wave-sensitive_2	SKMES1_LUNG	0.36	0.49	0.4481	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	ZBTB20--LSAMP	7	12	ZBTB20	4428	chr3:114790066:-	LSAMP	53449	chr3:115571464:-	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.0871	0.1494	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	SKMES1_LUNG	0.9	1	0.2365	TRUE	0	0	0	2	0	TRUE	ACH-000665
SKMES1_LUNG	OXNAD1--FBLN2	7	4	OXNAD1	4251	chr3:16313229:+	FBLN2	27389	chr3:13649562:+	ONLY_REF_SPLICE	YES	25	4	0.31	0.73	0.0871	0.0498	OXNAD1->chr3:16306706-16391806:+,oxidoreductase_NAD_binding_domain_containing_1,FBLN2->chr3:13573824-13679922:+,fibulin_2	SKMES1_LUNG	0.31	0.73	0.1369	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	PPP1R16A--MROH1	6	2	PPP1R16A	1554	chr8:145703905:+	MROH1	15769	chr8:145215873:+	ONLY_REF_SPLICE	YES	26	0	0.24	1	0.0747	0.0249	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	SKMES1_LUNG	0.24	1	0.0996	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	AC004980.7--RP11-1220K2.2	5	3	AC004980.7	2605	chr7:76180839:+	RP11-1220K2.2	40125	chr7:141875452:+	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.0622	0.0373	AC004980.7->chr7:76178677-76257299:+,RP11-1220K2.2->chr7:141811549-141922124:+	SKMES1_LUNG	0.53	1	0.0995	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	RP11-471M2.3--MIR4500HG	5	2	RP11-471M2.3	1749	chr13:88462739:-	MIR4500HG	14934	chr13:88163725:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.88	0.0622	0.0249	RP11-471M2.3->chr13:88459889-88463487:-,MIR4500HG->MIR4500_host_gene,chr13:88079469-88323514:-	SKMES1_LUNG	0.88	1	0.0871	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	PPIG--ROCK2	3	8	PPIG	1560	chr2:170441409:+	ROCK2	25459	chr2:11389924:-	ONLY_REF_SPLICE	YES	46	8	0.19	0.58	0.0373	0.0996	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-	SKMES1_LUNG	0.19	0.58	0.1369	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	UBL4A--CLIC2	4	0	UBL4A	1134	chrX:153714876:-	CLIC2	9296	chrX:154528458:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	UBL4A->chrX:153712056-153715009:-,ubiquitin_like_4A,CLIC2->chloride_intracellular_channel_2,chrX:154505500-154563966:-	SKMES1_LUNG	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	AP000350.4--PKM	3	2	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	17	1	0.23	0.0373	0.0249	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SKMES1_LUNG	0.23	1	0.0622	TRUE	0	0	0	14	0	TRUE	ACH-000665
SKMES1_LUNG	PPP1R16A--MROH1	3	1	PPP1R16A	1159	chr8:145703510:+	MROH1	16890	chr8:145218674:+	ONLY_REF_SPLICE	YES	7	18	0.36	0.18	0.0373	0.0124	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	SKMES1_LUNG	0.18	0.36	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	AC004980.7--RP11-1220K2.2	2	3	AC004980.7	2605	chr7:76180839:+	RP11-1220K2.2	41254	chr7:141883066:+	ONLY_REF_SPLICE	YES	7	1	0.42	0.83	0.0249	0.0373	AC004980.7->chr7:76178677-76257299:+,RP11-1220K2.2->chr7:141811549-141922124:+	SKMES1_LUNG	0.42	0.83	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	PPP1R16A--MROH1	2	2	PPP1R16A	1554	chr8:145703905:+	MROH1	16890	chr8:145218674:+	ONLY_REF_SPLICE	YES	26	18	0.13	0.18	0.0249	0.0249	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	SKMES1_LUNG	0.13	0.18	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	ATRX--PGK1	2	0	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	SKMES1_LUNG	1	1	0.0249	TRUE	0	1	0	9	0	TRUE	ACH-000665
SKMES1_LUNG	ELP4--WFDC3	2	0	ELP4	10185	chr11:31671769:+	WFDC3	26896	chr20:44387070:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4,WFDC3->WAP_four-disulfide_core_domain_3,chr20:44376583-44420571:-	SKMES1_LUNG	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	ZBTB20--LSAMP	1	4	ZBTB20	4428	chr3:114790066:-	LSAMP	54584	chr3:115561425:-	ONLY_REF_SPLICE	NO	2	14	0.71	0.26	0.0124	0.0498	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	SKMES1_LUNG	0.26	0.71	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	RP11-722M1.1--ARAP2	1	3	RP11-722M1.1	7110	chr4:36500049:-	ARAP2	13528	chr4:36231267:-	ONLY_REF_SPLICE	NO	0	4	1	0.5	0.0124	0.0373	RP11-722M1.1->chr4:36498159-36643522:-,ARAP2->ArfGAP_with_RhoGAP_domain,_ankyrin_repeat_and_PH_domain_2,Oncogene{Bushman},chr4:35949843-36246131:-	SKMES1_LUNG	0.5	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	TXNRD1--CHST11	1	3	TXNRD1	27532	chr12:104733051:+	CHST11	40027	chr12:105150727:+	ONLY_REF_SPLICE	YES	8	55	0.33	0.07	0.0124	0.0373	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	SKMES1_LUNG	0.07	0.33	0.0497	TRUE	0	0	0	2	0	TRUE	ACH-000665
SKMES1_LUNG	PPP1R16A--MROH1	1	1	PPP1R16A	1159	chr8:145703510:+	MROH1	15769	chr8:145215873:+	ONLY_REF_SPLICE	YES	7	0	0.22	1	0.0124	0.0124	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	SKMES1_LUNG	0.22	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	RP11-722M1.1--RP11-431M7.2	1	1	RP11-722M1.1	7110	chr4:36500049:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0124	0.0124	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	SKMES1_LUNG	1	1	0.0248	TRUE	0	1	0	4	1	TRUE	ACH-000665
SKMES1_LUNG	RP11-722M1.1--RP11-431M7.2	1	1	RP11-722M1.1	4366	chr4:36584279:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0124	0.0124	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	SKMES1_LUNG	0.4	1	0.0248	TRUE	0	1	0	4	1	TRUE	ACH-000665
RPMI7951_SKIN	GMEB1--RP11-442N24__B.1	40	11	GMEB1	2285	chr1:29010252:+	RP11-442N24__B.1	22049	chr1:28974705:+	ONLY_REF_SPLICE	YES	12	1	0.81	0.98	0.4363	0.12	LOCAL_REARRANGEMENT:+:[20151],GMEB1->chr1:28995244-29045865:+,glucocorticoid_modulatory_element_binding_protein_1,RP11-442N24__B.1->chr1:28969740-28975093:+	RPMI7951_SKIN	0.81	0.98	0.5563	TRUE	0	1	0	2	1	TRUE	ACH-000348
RPMI7951_SKIN	PTPN14--ABHD17AP3	31	14	PTPN14	2267	chr1:214724526:-	ABHD17AP3	43165	chr1:214781827:-	INCL_NON_REF_SPLICE	YES	60	2	0.43	0.96	0.3381	0.1527	LOCAL_REARRANGEMENT:-:[53021],PTPN14->Oncogene{Bushman},chr1:214522039-214725792:-,protein_tyrosine_phosphatase,_non-receptor_type_14,ABHD17AP3->abhydrolase_domain_containing_17A_pseudogene_3,chr1:214778813-214782183:-	RPMI7951_SKIN	0.43	0.96	0.4908	TRUE	0	0	0	2	0	TRUE	ACH-000348
RPMI7951_SKIN	ZDHHC15--MAGEA8	16	4	ZDHHC15	1614	chrX:74742724:-	MAGEA8	24717	chrX:149012847:+	ONLY_REF_SPLICE	YES	14	1	0.59	0.95	0.1745	0.0436	ZDHHC15->chrX:74588262-74743337:-,zinc_finger_DHHC-type_containing_15,MAGEA8->MAGE_family_member_A8,chrX:149009941-149014609:+	RPMI7951_SKIN	0.59	0.95	0.2181	TRUE	0	0	0	1	0	TRUE	ACH-000348
RPMI7951_SKIN	ADAM17--YWHAQ	9	3	ADAM17	1284	chr2:9695638:-	YWHAQ	29763	chr2:9731644:-	ONLY_REF_SPLICE	YES	87	1161	0.12	0.01	0.0982	0.0327	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[28180],ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	RPMI7951_SKIN	0.01	0.12	0.1309	TRUE	0	4	0	5	2	TRUE	ACH-000348
RPMI7951_SKIN	GMEB1--RP11-442N24__B.1	5	11	GMEB1	2285	chr1:29010252:+	RP11-442N24__B.1	22053	chr1:28974709:+	ONLY_REF_SPLICE	YES	12	1	0.57	0.94	0.0545	0.12	LOCAL_REARRANGEMENT:+:[20151],GMEB1->chr1:28995244-29045865:+,glucocorticoid_modulatory_element_binding_protein_1,RP11-442N24__B.1->chr1:28969740-28975093:+	RPMI7951_SKIN	0.57	0.94	0.1745	TRUE	0	1	0	2	1	TRUE	ACH-000348
RPMI7951_SKIN	PARD3--RP11-762I7.5	2	0	PARD3	3733	chr10:34805907:-	RP11-762I7.5	51859	chr12:56154424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,RP11-762I7.5->chr12:56151059-56221330:-	RPMI7951_SKIN	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000348
RPMI7951_SKIN	RP11-163F15.1--RP11-215N21.1	1	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0109	0.0109	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	RPMI7951_SKIN	0.4	1	0.0218	TRUE	0	5	0	7	5	TRUE	ACH-000348
RPMI7951_SKIN	RP11-400N13.3--RP11-191N8.2	1	1	RP11-400N13.3	2344	chr1:222231756:-	RP11-191N8.2	6776	chr1:222013795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0109	0.0109	RP11-400N13.3->chr1:222215047-222238105:-,RP11-191N8.2->chr1:222001008-222014008:-	RPMI7951_SKIN	1	1	0.0218	TRUE	0	16	0	2	11	TRUE	ACH-000348
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLX1NB--TRDC	171	147	TLX1NB	1341	chr10:102890543:-	TRDC	7892	chr14:22931924:+	ONLY_REF_SPLICE	YES	5	0	0.98	1	2.0762	1.7848	Mitelman{ALL=2},TLX1NB->TLX1_neighbor,chr10:102849078-102890883:-,TRDC->T_cell_receptor_delta_constant,chr14:22931924-22934779:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	3.861	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AE000661.37--TLX1	167	118	AE000661.37	4572	chr14:22931924:-	TLX1	17229	chr10:102890543:+	INCL_NON_REF_SPLICE	YES	4	46	0.99	0.86	2.0276	1.4327	AE000661.37->chr14:22849083-22951948:-,TLX1->Oncogene{Bushman},T-cell_leukemia_homeobox_1,chr10:102889257-102897545:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	0.99	3.4603	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLX1NB--TRDC	141	162	TLX1NB	1370	chr10:102890514:-	TRDC	7892	chr14:22931924:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.712	1.9669	Mitelman{ALL=2},TLX1NB->TLX1_neighbor,chr10:102849078-102890883:-,TRDC->T_cell_receptor_delta_constant,chr14:22931924-22934779:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	3.6789	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--ABL1	140	90	NUP214	38728	chr9:134098317:+	ABL1	51696	chr9:133729451:+	ONLY_REF_SPLICE	YES	92	62	0.71	0.79	1.6998	1.0927	chimerdb_omim:{T-cellacutelymphoblasticleukemia},chimerdb_pubmed{Tcell acute lymphoblastic leukemia (TALL),Tcell acute lymphoblastic leukemia,TALL,Tcell leukemia},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.79	2.7925	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AE000661.37--TLX1	128	124	AE000661.37	4572	chr14:22931924:-	TLX1	17200	chr10:102890514:+	INCL_NON_REF_SPLICE	YES	4	44	0.98	0.85	1.5541	1.5056	AE000661.37->chr14:22849083-22951948:-,TLX1->Oncogene{Bushman},T-cell_leukemia_homeobox_1,chr10:102889257-102897545:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.98	3.0597	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AE000661.37--TLX1	7	124	AE000661.37	4572	chr14:22931924:-	TLX1	16851	chr10:102890165:+	INCL_NON_REF_SPLICE	YES	4	19	0.97	0.87	0.085	1.5056	AE000661.37->chr14:22849083-22951948:-,TLX1->Oncogene{Bushman},T-cell_leukemia_homeobox_1,chr10:102889257-102897545:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	0.97	1.5906	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	35	0	TUBA1B	4414	chr12:49521767:-	PTMA	13136	chr2:232577153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.425	0	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.425	TRUE	0	0	0	4	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--ABL1	7	85	NUP214	38728	chr9:134098317:+	ABL1	51699	chr9:133729454:+	ONLY_REF_SPLICE	YES	92	61	0.5	0.6	0.085	1.032	chimerdb_omim:{T-cellacutelymphoblasticleukemia},chimerdb_pubmed{Tcell acute lymphoblastic leukemia (TALL),Tcell acute lymphoblastic leukemia,TALL,Tcell leukemia},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.6	1.117	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLX1NB--TRDC	7	64	TLX1NB	1370	chr10:102890514:-	TRDC	8049	chr14:22932081:+	INCL_NON_REF_SPLICE	YES	0	568	1	0.11	0.085	0.7771	Mitelman{ALL=2},TLX1NB->TLX1_neighbor,chr10:102849078-102890883:-,TRDC->T_cell_receptor_delta_constant,chr14:22931924-22934779:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.8621	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--C8orf56	18	8	SLC25A32	1406	chr8:104427012:-	C8orf56	13556	chr8:104145597:-	ONLY_REF_SPLICE	YES	51	0	0.34	1	0.2185	0.0971	SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,C8orf56->chr8:104145191-104153703:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	1	0.3156	TRUE	0	1	0	1	1	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLX1NB--TRDC	4	54	TLX1NB	1341	chr10:102890543:-	TRDC	8049	chr14:22932081:+	INCL_NON_REF_SPLICE	YES	5	568	0.92	0.09	0.0486	0.6556	Mitelman{ALL=2},TLX1NB->TLX1_neighbor,chr10:102849078-102890883:-,TRDC->T_cell_receptor_delta_constant,chr14:22931924-22934779:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.92	0.7042	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	14	0	TUBA1B	4124	chr12:49522057:-	PTMA	9248	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.17	0	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.17	TRUE	0	0	0	3	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AE000661.37--TLX1	5	11	AE000661.37	4415	chr14:22932081:-	TLX1	17200	chr10:102890514:+	INCL_NON_REF_SPLICE	YES	132	44	0.11	0.27	0.0607	0.1336	AE000661.37->chr14:22849083-22951948:-,TLX1->Oncogene{Bushman},T-cell_leukemia_homeobox_1,chr10:102889257-102897545:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.27	0.1943	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--ABL1	1	27	NUP214	37295	chr9:134090755:+	ABL1	51696	chr9:133729451:+	ONLY_REF_SPLICE	NO	86	62	0.25	0.31	0.0121	0.3278	chimerdb_omim:{T-cellacutelymphoblasticleukemia},chimerdb_pubmed{Tcell acute lymphoblastic leukemia (TALL),Tcell acute lymphoblastic leukemia,TALL,Tcell leukemia},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.31	0.3399	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AE000661.37--TLX1	4	11	AE000661.37	4415	chr14:22932081:-	TLX1	17229	chr10:102890543:+	INCL_NON_REF_SPLICE	YES	132	46	0.1	0.25	0.0486	0.1336	AE000661.37->chr14:22849083-22951948:-,TLX1->Oncogene{Bushman},T-cell_leukemia_homeobox_1,chr10:102889257-102897545:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.25	0.1822	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBR5--AZIN1	5	0	UBR5	1669	chr8:103424401:-	AZIN1	63524	chr8:103870378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0607	0	GTEx&tcga_normals:1/3694=0.03%,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	TRUE	0	0	0	4	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	4	0	TUBA1B	4386	chr12:49521795:-	PTMA	12658	chr2:232576675:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0486	TRUE	0	0	0	4	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATXN2L--PTMA	3	0	ATXN2L	13083	chr16:28847966:+	PTMA	18305	chr2:232573234:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	ATXN2L->ataxin_2_like,chr16:28834356-28848558:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC009403.2--SRSF11	2	0	AC009403.2	2738	chr7:155436162:-	SRSF11	24457	chr1:70715635:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	AC009403.2->chr7:155403925-155437899:-,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EMC2--RASA3	2	0	EMC2	1098	chr8:109455927:+	RASA3	22427	chr13:114817630:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB27A--CCPG1	2	0	RAB27A	4005	chr15:55581914:-	CCPG1	27753	chr15:55670574:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_REARRANGEMENT:-:[20919],RAB27A->RAB27A,_member_RAS_oncogene_family,chr15:55495164-55611311:-,CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RHOH--SFPQ	2	0	RHOH	1286	chr4:40192958:+	SFPQ	34399	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	RHOH->Oncogene{Bushman},chr4:40192673-40248587:+,ras_homolog_family_member_H,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM33--TDRD3	2	0	TRIM33	3895	chr1:115005726:-	TDRD3	48151	chr13:61141659:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	TRIM33->Oncogene{Bushman},chr1:114935399-115053781:-,tripartite_motif_containing_33,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NLRP14--SYT9	1	1	NLRP14	13762	chr11:7091687:+	SYT9	20136	chr11:7324270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0.0121	NLRP14->NLR_family,_pyrin_domain_containing_14,chr11:7041677-7092539:+,SYT9->chr11:7260009-7490273:+,synaptotagmin_9	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000105
MDAMB231_BREAST	EMC2--EIF3E	3	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0441	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	MDAMB231_BREAST	1	1	0.0441	TRUE	0	0	0	12	0	TRUE	ACH-000768
MDAMB231_BREAST	NECAP1--TPT1-AS1	2	0	NECAP1	2859	chr12:8242632:+	TPT1-AS1	21718	chr13:45951196:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	NECAP1->NECAP_endocytosis_associated_1,chr12:8234807-8250367:+,TPT1-AS1->TPT1_antisense_RNA_1,chr13:45915480-45965872:+	MDAMB231_BREAST	1	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000768
MDAMB231_BREAST	ZNF324B--RPS5	2	0	ZNF324B	3741	chr19:58965711:+	RPS5	13426	chr19:58904343:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	LOCAL_REARRANGEMENT:+:[56798],ZNF324B->chr19:58962971-58969200:+,zinc_finger_protein_324B,RPS5->chr19:58897767-58906173:+,ribosomal_protein_S5	MDAMB231_BREAST	1	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000768
MDAMB231_BREAST	DIP2C--WDR37	1	1	DIP2C	1250	chr10:735434:-	WDR37	53145	chr10:1118056:+	ONLY_REF_SPLICE	YES	12	13	0.14	0.13	0.0147	0.0147	DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	MDAMB231_BREAST	0.13	0.14	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000768
MDAMB231_BREAST	LDLRAD3--QSER1	1	1	LDLRAD3	4538	chr11:36103328:+	QSER1	19918	chr11:32948703:+	ONLY_REF_SPLICE	NO	34	4	0.06	0.33	0.0147	0.0147	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1	MDAMB231_BREAST	0.06	0.33	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000768
PSN1_PANCREAS	SLC4A7--SUMF1	208	108	SLC4A7	21279	chr3:27442255:-	SUMF1	44932	chr3:4452662:-	ONLY_REF_SPLICE	YES	264	54	0.54	0.85	2.4068	1.2497	SLC4A7->chr3:27414214-27525911:-,solute_carrier_family_4_member_7,SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1	PSN1_PANCREAS	0.54	0.85	3.6565	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	GBF1--PRDX3	169	156	GBF1	3423	chr10:104019873:+	PRDX3	33888	chr10:120934104:-	ONLY_REF_SPLICE	YES	94	1160	0.78	0.22	1.9555	1.8051	GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1,PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3	PSN1_PANCREAS	0.22	0.78	3.7606	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	PRDX3--LRRC27	73	77	PRDX3	2212	chr10:120936533:-	LRRC27	18330	chr10:134155717:+	ONLY_REF_SPLICE	YES	1202	28	0.11	0.84	0.8447	0.891	PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	PSN1_PANCREAS	0.11	0.84	1.7357	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	TBCA--RP11-353N14.1	44	39	TBCA	2304	chr5:77072029:-	RP11-353N14.1	13980	chr17:77775750:+	ONLY_REF_SPLICE	YES	439	0	0.16	1	0.5091	0.4513	TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,RP11-353N14.1->chr17:77774397-77776326:+	PSN1_PANCREAS	0.16	1	0.9604	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	CASC11--RNU4-25P	30	11	CASC11	10250	chr8:128700016:-	RNU4-25P	14846	chr8:129022690:-	INCL_NON_REF_SPLICE	YES	57	6	0.42	0.87	0.3471	0.1273	CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-,RNU4-25P->RNA,_U4_small_nuclear_25,_pseudogene,chr8:129022628-129022857:-	PSN1_PANCREAS	0.42	0.87	0.4744	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	ANP32E--NCL	29	0	ANP32E	7086	chr1:150199005:-	NCL	20399	chr2:232325472:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3356	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,NCL->chr2:232318242-232348352:-,nucleolin	PSN1_PANCREAS	1	1	0.3356	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	PRDX3--LRRC27	6	55	PRDX3	2212	chr10:120936533:-	LRRC27	19389	chr10:134158002:+	ONLY_REF_SPLICE	YES	1202	26	0.05	0.7	0.0694	0.6364	PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	PSN1_PANCREAS	0.05	0.7	0.7058	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	PRDX3--LRRC27	3	61	PRDX3	2212	chr10:120936533:-	LRRC27	18353	chr10:134155740:+	INCL_NON_REF_SPLICE	YES	1202	32	0.05	0.67	0.0347	0.7058	PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	PSN1_PANCREAS	0.05	0.67	0.7405	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	CASC11--RNU4-25P	13	13	CASC11	11342	chr8:128698924:-	RNU4-25P	14846	chr8:129022690:-	INCL_NON_REF_SPLICE	YES	26	6	0.5	0.81	0.1504	0.1504	CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-,RNU4-25P->RNA,_U4_small_nuclear_25,_pseudogene,chr8:129022628-129022857:-	PSN1_PANCREAS	0.5	0.81	0.3008	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	ANP32E--NCL	13	0	ANP32E	7005	chr1:150199086:-	NCL	20390	chr2:232325481:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1504	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,NCL->chr2:232318242-232348352:-,nucleolin	PSN1_PANCREAS	1	1	0.1504	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	PRDX3--LRRC27	11	1	PRDX3	1079	chr10:120938267:-	LRRC27	19389	chr10:134158002:+	ONLY_REF_SPLICE	YES	0	26	1	0.32	0.1273	0.0116	PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	PSN1_PANCREAS	0.32	1	0.1389	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	ANP32E--NCL	11	0	ANP32E	7086	chr1:150199005:-	NCL	19588	chr2:232326283:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1273	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,NCL->chr2:232318242-232348352:-,nucleolin	PSN1_PANCREAS	1	1	0.1273	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	CASC4--RP11-403B2.7	8	8	CASC4	1628	chr15:44581554:+	RP11-403B2.7	26532	chr15:20936423:-	ONLY_REF_SPLICE	YES	183	0	0.08	1	0.0926	0.0926	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,RP11-403B2.7->chr15:20935076-20961512:-	PSN1_PANCREAS	0.08	1	0.1852	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	ARHGEF2--UBQLN4	6	5	ARHGEF2	7863	chr1:155959025:-	UBQLN4	43465	chr1:156006921:-	ONLY_REF_SPLICE	YES	40	222	0.22	0.05	0.0694	0.0579	LOCAL_REARRANGEMENT:-:[28231],ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-,UBQLN4->chr1:156005092-156023585:-,ubiquilin_4	PSN1_PANCREAS	0.05	0.22	0.1273	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	PVT1--CASC8	4	7	PVT1	1202	chr8:128806980:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	739	1	0.01	0.92	0.0463	0.081	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	PSN1_PANCREAS	0.01	0.92	0.1273	TRUE	0	2	0	5	2	TRUE	ACH-000320
PSN1_PANCREAS	ANP32E--NCL	5	0	ANP32E	7076	chr1:150199015:-	NCL	19455	chr2:232326416:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,NCL->chr2:232318242-232348352:-,nucleolin	PSN1_PANCREAS	1	1	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	HTRA3--S100A6	5	0	HTRA3	6950	chr4:8295867:+	S100A6	16328	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	HTRA3->HtrA_serine_peptidase_3,chr4:8271492-8308838:+,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	PSN1_PANCREAS	1	1	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	C17orf76-AS1--RHOA	4	0	C17orf76-AS1	1593	chr17:16342728:+	RHOA	16477	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0463	0	C17orf76-AS1->chr17:16342136-16381992:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	PSN1_PANCREAS	1	1	0.0463	TRUE	0	0	0	4	0	TRUE	ACH-000320
PSN1_PANCREAS	LPIN2--MYL12B	4	0	LPIN2	1229	chr18:3013085:-	MYL12B	32733	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0463	0	LPIN2->chr18:2916992-3013313:-,lipin_2,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	PSN1_PANCREAS	1	1	0.0463	TRUE	0	1	0	4	0	TRUE	ACH-000320
PSN1_PANCREAS	RCC1--SNX5	4	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0463	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	PSN1_PANCREAS	1	1	0.0463	TRUE	0	5	0	11	0	TRUE	ACH-000320
PSN1_PANCREAS	PVT1--CASC8	1	9	PVT1	13955	chr8:129001537:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	NO	211	1	0.05	0.91	0.0116	0.1041	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	PSN1_PANCREAS	0.05	0.91	0.1157	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	WWOX--FHIT	3	1	WWOX	23541	chr16:78466649:+	FHIT	48299	chr3:59908140:-	ONLY_REF_SPLICE	YES	9	18	0.31	0.18	0.0347	0.0116	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	PSN1_PANCREAS	0.18	0.31	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	VIM--RPS28	3	0	VIM	2114	chr10:17271371:+	RPS28	12553	chr19:8386390:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PSN1_PANCREAS	1	1	0.0347	TRUE	0	0	0	4	0	TRUE	ACH-000320
PSN1_PANCREAS	ABCC1--RRN3P1	2	0	ABCC1	25239	chr16:16196574:+	RRN3P1	45710	chr16:21830082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,RRN3P1->RRN3_homolog,_RNA_polymerase_I_transcription_factor_pseudogene_1,chr16:21807951-21831731:-	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	PSN1_PANCREAS	1	1	0.0231	TRUE	0	6	0	16	3	TRUE	ACH-000320
PSN1_PANCREAS	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	11	0	TRUE	ACH-000320
PSN1_PANCREAS	HNRNPU--PRRC2C	2	0	HNRNPU	10119	chr1:245018726:-	PRRC2C	53892	chr1:171556142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	HNRNPU->chr1:245014468-245027844:-,heterogeneous_nuclear_ribonucleoprotein_U_(scaffold_attachment_factor_A),PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	PTPN1--PTGIS	2	0	PTPN1	1237	chr20:49127127:+	PTGIS	21144	chr20:48140776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1,PTGIS->Oncogene{Bushman},chr20:48120411-48184683:-,prostaglandin_I2_(prostacyclin)_synthase	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	RBM6--DAG1	2	0	RBM6	1219	chr3:49977658:+	DAG1	41920	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	2	0	TRUE	ACH-000320
PSN1_PANCREAS	SDCBP2-AS1--AFMID	2	0	SDCBP2-AS1	1125	chr20:1306173:+	AFMID	22548	chr17:76202027:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	SDCBP2-AS1->SDCBP2_antisense_RNA_1,chr20:1306049-1359378:+,AFMID->arylformamidase,chr17:76183398-76203782:+	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	SLC38A10--SLC16A3	2	0	SLC38A10	17526	chr17:79225995:-	SLC16A3	33547	chr17:80193859:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	HGNC_GENEFAM,SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10,SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	SPAG9--NME2	2	0	SPAG9	1512	chr17:49197715:-	NME2	53943	chr17:49247298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	LOCAL_INVERSION:-:+:[32725],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,NME2->NME/NM23_nucleoside_diphosphate_kinase_2,chr17:49230951-49249105:+	PSN1_PANCREAS	1	1	0.0231	TRUE	0	1	0	2	0	TRUE	ACH-000320
PSN1_PANCREAS	TRA2A--HNRNPC	2	0	TRA2A	1253	chr7:23571408:-	HNRNPC	21224	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	HGNC_GENEFAM,TRA2A->chr7:23544399-23571660:-,transformer_2_alpha_homolog,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	WWOX--FHIT	1	1	WWOX	23541	chr16:78466649:+	FHIT	50436	chr3:59738047:-	ONLY_REF_SPLICE	YES	9	18	0.18	0.1	0.0116	0.0116	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	PSN1_PANCREAS	0.1	0.18	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000320
SW1990_PANCREAS	MIER1--PTMA	118	0	MIER1	11096	chr1:67423844:+	PTMA	31863	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6878	0	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SW1990_PANCREAS	1	1	1.6878	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	TMCO3--RBM14	37	39	TMCO3	9896	chr13:114175048:+	RBM14	28154	chr11:66393932:+	ONLY_REF_SPLICE	YES	91	69	0.46	0.52	0.5292	0.5578	{Klijn_CCL:Pancreas=1},TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+	SW1990_PANCREAS	0.46	0.52	1.087	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	MIER1--PTMA	23	0	MIER1	11096	chr1:67423844:+	PTMA	32433	chr2:232576640:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.329	0	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SW1990_PANCREAS	1	1	0.329	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	TADA2A--DMD	17	8	TADA2A	11279	chr17:35804870:+	DMD	105496	chrX:31341775:-	ONLY_REF_SPLICE	YES	35	0	0.42	1	0.2432	0.1144	{Klijn_CCL:Pancreas=1},TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,DMD->chrX:31115794-33357558:-,dystrophin	SW1990_PANCREAS	0.42	1	0.3576	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	ZNRD1-AS1--TRIM40	16	8	ZNRD1-AS1	11211	chr6:29989444:-	TRIM40	33021	chr6:30113771:+	ONLY_REF_SPLICE	YES	4	0	0.86	1	0.2289	0.1144	LOCAL_INVERSION:-:+:[74468],ZNRD1-AS1->chr6:29968788-30029417:-,TRIM40->chr6:30103885-30116512:+,tripartite_motif_containing_40	SW1990_PANCREAS	0.86	1	0.3433	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	MIER1--PTMA	16	0	MIER1	11113	chr1:67423861:+	PTMA	31884	chr2:232576091:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2289	0	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SW1990_PANCREAS	1	1	0.2289	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	MIER1--PTMA	14	0	MIER1	11096	chr1:67423844:+	PTMA	31873	chr2:232576080:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2002	0	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SW1990_PANCREAS	1	1	0.2002	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	TMCO3--RBM14	3	40	TMCO3	9896	chr13:114175048:+	RBM14	27259	chr11:66393037:+	INCL_NON_REF_SPLICE	YES	91	35	0.32	0.55	0.0429	0.5721	{Klijn_CCL:Pancreas=1},TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+	SW1990_PANCREAS	0.32	0.55	0.615	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	ITSN1--C21orf49	9	9	ITSN1	1314	chr21:35015019:+	C21orf49	75345	chr21:34258240:+	ONLY_REF_SPLICE	YES	48	0	0.27	1	0.1287	0.1287	ITSN1->chr21:35014706-35272165:+,intersectin_1,C21orf49->chr21:34144411-34266043:+	SW1990_PANCREAS	0.27	1	0.2574	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	ZNRD1-AS1--TRIM40	10	3	ZNRD1-AS1	4526	chr6:30025892:-	TRIM40	33021	chr6:30113771:+	ONLY_REF_SPLICE	YES	10	0	0.57	1	0.143	0.0429	LOCAL_INVERSION:-:+:[74468],ZNRD1-AS1->chr6:29968788-30029417:-,TRIM40->chr6:30103885-30116512:+,tripartite_motif_containing_40	SW1990_PANCREAS	0.57	1	0.1859	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	XXbac-BPG252P9.9--IFI27	9	3	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	3694	2	0	0.86	0.1287	0.0429	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	SW1990_PANCREAS	0	0.86	0.1716	TRUE	0	2	0	13	2	TRUE	ACH-000155
SW1990_PANCREAS	TMEM241--NPC1	7	5	TMEM241	4388	chr18:20979530:-	NPC1	44141	chr18:21125113:-	ONLY_REF_SPLICE	YES	7	21	0.63	0.36	0.1001	0.0715	LOCAL_REARRANGEMENT:-:[68223],TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-	SW1990_PANCREAS	0.36	0.63	0.1716	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	MIER1--PTMA	8	0	MIER1	11113	chr1:67423861:+	PTMA	32444	chr2:232576651:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1144	0	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SW1990_PANCREAS	1	1	0.1144	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	CTSC--RPL13A	7	0	CTSC	19843	chr11:88027207:-	RPL13A	26005	chr19:49994730:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1001	0	CTSC->cathepsin_C,chr11:88026760-88070955:-,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	SW1990_PANCREAS	1	1	0.1001	TRUE	0	0	0	2	0	TRUE	ACH-000155
SW1990_PANCREAS	DHX36--ARHGEF26-AS1	6	1	DHX36	7825	chr3:154027442:-	ARHGEF26-AS1	40944	chr3:153748168:-	ONLY_REF_SPLICE	YES	53	0	0.12	1	0.0858	0.0143	DHX36->DEAH-box_helicase_36,chr3:153990335-154042286:-,ARHGEF26-AS1->ARHGEF26_antisense_RNA_1,chr3:153742190-153839121:-	SW1990_PANCREAS	0.12	1	0.1001	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	TMEM241--NPC1	6	1	TMEM241	3306	chr18:21001331:-	NPC1	44141	chr18:21125113:-	ONLY_REF_SPLICE	YES	12	21	0.37	0.25	0.0858	0.0143	LOCAL_REARRANGEMENT:-:[68223],TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-	SW1990_PANCREAS	0.25	0.37	0.1001	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	MIER1--PTMA	6	0	MIER1	11111	chr1:67423859:+	PTMA	32424	chr2:232576631:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0858	0	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SW1990_PANCREAS	1	1	0.0858	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	GET4--TMEM222	5	0	GET4	6761	chr7:926268:+	TMEM222	16434	chr1:27648764:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4,TMEM222->chr1:27648651-27662891:+,transmembrane_protein_222	SW1990_PANCREAS	1	1	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	ZNRD1-AS1--TRIM40	3	6	ZNRD1-AS1	10116	chr6:30002685:-	TRIM40	33021	chr6:30113771:+	ONLY_REF_SPLICE	YES	8	0	0.53	1	0.0429	0.0858	LOCAL_INVERSION:-:+:[74468],ZNRD1-AS1->chr6:29968788-30029417:-,TRIM40->chr6:30103885-30116512:+,tripartite_motif_containing_40	SW1990_PANCREAS	0.53	1	0.1287	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	NPM1P46--HMGB1	4	0	NPM1P46	1679	chr2:198244938:-	HMGB1	12190	chr13:31035581:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0	NPM1P46->chr2:198244425-198245616:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_46,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	SW1990_PANCREAS	1	1	0.0572	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	ITSN1--C21orf49	2	3	ITSN1	1314	chr21:35015019:+	C21orf49	76482	chr21:34265886:+	ONLY_REF_SPLICE	NO	48	0	0.09	1	0.0286	0.0429	ITSN1->chr21:35014706-35272165:+,intersectin_1,C21orf49->chr21:34144411-34266043:+	SW1990_PANCREAS	0.09	1	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	TADA2A--DMD	1	6	TADA2A	10206	chr17:35802753:+	DMD	105496	chrX:31341775:-	ONLY_REF_SPLICE	YES	50	0	0.12	1	0.0143	0.0858	{Klijn_CCL:Pancreas=1},TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,DMD->chrX:31115794-33357558:-,dystrophin	SW1990_PANCREAS	0.12	1	0.1001	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	DHX36--ARHGEF26-AS1	1	1	DHX36	7825	chr3:154027442:-	ARHGEF26-AS1	40947	chr3:153748165:-	ONLY_REF_SPLICE	YES	53	0	0.04	1	0.0143	0.0143	DHX36->DEAH-box_helicase_36,chr3:153990335-154042286:-,ARHGEF26-AS1->ARHGEF26_antisense_RNA_1,chr3:153742190-153839121:-	SW1990_PANCREAS	0.04	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000155
ECGI10_OESOPHAGUS	SNRPD1--AC016629.3	85	13	SNRPD1	1177	chr18:19192404:+	AC016629.3	8883	chr19:59110627:-	INCL_NON_REF_SPLICE	YES	239	0	0.29	1	0.7776	0.1189	SNRPD1->chr18:19192228-19210417:+,small_nuclear_ribonucleoprotein_D1_polypeptide,AC016629.3->chr19:59105263-59110722:-	ECGI10_OESOPHAGUS	0.29	1	0.8965	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	CD44--PAMR1	73	31	CD44	1501	chr11:35160917:+	PAMR1	35703	chr11:35515820:-	ONLY_REF_SPLICE	YES	1259	0	0.08	1	0.6678	0.2836	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	ECGI10_OESOPHAGUS	0.08	1	0.9514	TRUE	0	0	0	2	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	RANBP3--RFX2	26	0	RANBP3	1082	chr19:5978072:-	RFX2	48959	chr19:6016282:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2378	0	LOCAL_REARRANGEMENT:-:[15022],RANBP3->RAN_binding_protein_3,chr19:5916150-5978153:-,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	ECGI10_OESOPHAGUS	1	1	0.2378	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	PROCA1--TMEM33	23	9	PROCA1	6786	chr17:27031101:-	TMEM33	17884	chr4:41956087:+	INCL_NON_REF_SPLICE	YES	3	69	0.91	0.32	0.2104	0.0823	PROCA1->chr17:27030215-27038872:-,protein_interacting_with_cyclin_A1,TMEM33->chr4:41937137-41962589:+,transmembrane_protein_33	ECGI10_OESOPHAGUS	0.32	0.91	0.2927	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	NFXL1--GABRB1	23	2	NFXL1	1668	chr4:47915986:-	GABRB1	32082	chr4:47163266:+	ONLY_REF_SPLICE	YES	5	0	0.83	1	0.2104	0.0183	NFXL1->chr4:47849257-47916653:-,nuclear_transcription_factor,_X-box_binding_like_1,GABRB1->chr4:46995740-47428461:+,gamma-aminobutyric_acid_type_A_receptor_beta1_subunit	ECGI10_OESOPHAGUS	0.83	1	0.2287	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	RANBP3--RFX2	21	1	RANBP3	1082	chr19:5978072:-	RFX2	46774	chr19:6026248:-	ONLY_REF_SPLICE	YES	2	5	0.92	0.81	0.1921	0.0091	LOCAL_REARRANGEMENT:-:[15022],RANBP3->RAN_binding_protein_3,chr19:5916150-5978153:-,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	ECGI10_OESOPHAGUS	0.81	0.92	0.2012	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	C11orf49--AC008163.4	17	12	C11orf49	3405	chr11:47008861:+	AC008163.4	27025	chr7:81189581:-	ONLY_REF_SPLICE	YES	52	0	0.36	1	0.1555	0.1098	C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49,AC008163.4->chr7:81157719-81191099:-	ECGI10_OESOPHAGUS	0.36	1	0.2653	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	FAM222B--PHF12	13	14	FAM222B	5825	chr17:27117396:-	PHF12	26936	chr17:27248826:-	ONLY_REF_SPLICE	YES	22	38	0.55	0.42	0.1189	0.1281	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	ECGI10_OESOPHAGUS	0.42	0.55	0.247	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	SNRPD1--AC016629.3	12	16	SNRPD1	1177	chr18:19192404:+	AC016629.3	8790	chr19:59110720:-	INCL_NON_REF_SPLICE	YES	239	0	0.1	1	0.1098	0.1464	SNRPD1->chr18:19192228-19210417:+,small_nuclear_ribonucleoprotein_D1_polypeptide,AC016629.3->chr19:59105263-59110722:-	ECGI10_OESOPHAGUS	0.1	1	0.2562	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	NALCN--LINC00393	12	3	NALCN	8525	chr13:101997652:-	LINC00393	54104	chr13:73987773:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1098	0.0274	NALCN->chr13:101706130-102068843:-,sodium_leak_channel,_non-selective,LINC00393->chr13:73987610-74222390:-,long_intergenic_non-protein_coding_RNA_393	ECGI10_OESOPHAGUS	0.88	1	0.1372	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	FAM222B--PHF12	10	3	FAM222B	2441	chr17:27169700:-	PHF12	26936	chr17:27248826:-	ONLY_REF_SPLICE	YES	4	38	0.76	0.25	0.0915	0.0274	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	ECGI10_OESOPHAGUS	0.25	0.76	0.1189	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	NALCN--LINC00393	9	4	NALCN	8560	chr13:101997617:-	LINC00393	54104	chr13:73987773:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0823	0.0366	NALCN->chr13:101706130-102068843:-,sodium_leak_channel,_non-selective,LINC00393->chr13:73987610-74222390:-,long_intergenic_non-protein_coding_RNA_393	ECGI10_OESOPHAGUS	1	1	0.1189	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	CELF1--AMBRA1	8	4	CELF1	16003	chr11:47504247:-	AMBRA1	50579	chr11:46465148:-	ONLY_REF_SPLICE	YES	91	52	0.12	0.19	0.0732	0.0366	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-	ECGI10_OESOPHAGUS	0.12	0.19	0.1098	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	RFX3--PDHX	8	1	RFX3	1258	chr9:3525747:-	PDHX	38794	chr11:34978931:+	ONLY_REF_SPLICE	YES	6	117	0.6	0.07	0.0732	0.0091	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	ECGI10_OESOPHAGUS	0.07	0.6	0.0823	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	REV3L--FYN	7	2	REV3L	1966	chr6:111803953:-	FYN	51684	chr6:112167832:-	ONLY_REF_SPLICE	YES	6	6	0.6	0.6	0.064	0.0183	GTEx_FI:{Skin=[count:2=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Cells_-_Transformed_fibroblasts=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-	ECGI10_OESOPHAGUS	0.6	0.6	0.0823	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	NHS--IL1RAPL1	7	0	NHS	5498	chrX:17710588:+	IL1RAPL1	23099	chrX:28807437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0	NHS->NHS_actin_remodeling_regulator,chrX:17393543-17754114:+,IL1RAPL1->chrX:28605516-29974840:+,interleukin_1_receptor_accessory_protein_like_1	ECGI10_OESOPHAGUS	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	SLC7A5--ATP5G2	7	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	ECGI10_OESOPHAGUS	1	1	0.064	TRUE	0	0	0	7	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	SNRPD1--AC016629.3	6	4	SNRPD1	1177	chr18:19192404:+	AC016629.3	10044	chr19:59109183:-	ONLY_REF_SPLICE	YES	239	5	0.04	0.67	0.0549	0.0366	SNRPD1->chr18:19192228-19210417:+,small_nuclear_ribonucleoprotein_D1_polypeptide,AC016629.3->chr19:59105263-59110722:-	ECGI10_OESOPHAGUS	0.04	0.67	0.0915	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	APTX--ZDHHC21	6	0	APTX	4991	chr9:33001565:-	ZDHHC21	26545	chr9:14662324:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0549	0	APTX->aprataxin,chr9:32972604-33025166:-,ZDHHC21->chr9:14611069-14693469:-,zinc_finger_DHHC-type_containing_21	ECGI10_OESOPHAGUS	1	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	C11orf49--AC008163.4	5	2	C11orf49	1163	chr11:46958402:+	AC008163.4	27025	chr7:81189581:-	ONLY_REF_SPLICE	YES	11	0	0.39	1	0.0457	0.0183	C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49,AC008163.4->chr7:81157719-81191099:-	ECGI10_OESOPHAGUS	0.39	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MIR205HG--FTH1	5	0	MIR205HG	4437	chr1:209605601:+	FTH1	8214	chr11:61734938:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	ECGI10_OESOPHAGUS	1	1	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	FAM222B--PHF12	2	10	FAM222B	4726	chr17:27139227:-	PHF12	26936	chr17:27248826:-	ONLY_REF_SPLICE	YES	18	38	0.4	0.24	0.0183	0.0915	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	ECGI10_OESOPHAGUS	0.24	0.4	0.1098	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	IL1RAPL1--REPS2	4	2	IL1RAPL1	2755	chrX:28807542:+	REPS2	19579	chrX:17024344:+	ONLY_REF_SPLICE	YES	0	6	1	0.5	0.0366	0.0183	IL1RAPL1->chrX:28605516-29974840:+,interleukin_1_receptor_accessory_protein_like_1,REPS2->Oncogene{Bushman},RALBP1_associated_Eps_domain_containing_2,chrX:16964814-17171395:+	ECGI10_OESOPHAGUS	0.5	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	PKN2--RP5-908D6.1	4	2	PKN2	6391	chr1:89237562:+	RP5-908D6.1	27892	chr1:89797606:+	INCL_NON_REF_SPLICE	YES	26	0	0.19	1	0.0366	0.0183	PKN2->chr1:89149905-89301938:+,protein_kinase_N2,RP5-908D6.1->chr1:89790205-89800563:+	ECGI10_OESOPHAGUS	0.19	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	FAM222B--PHF12	3	5	FAM222B	4726	chr17:27139227:-	PHF12	28057	chr17:27246293:-	ONLY_REF_SPLICE	YES	18	51	0.31	0.14	0.0274	0.0457	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	ECGI10_OESOPHAGUS	0.14	0.31	0.0731	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	ADK--KAT6B	4	0	ADK	13900	chr10:76360251:+	KAT6B	25609	chr10:76719728:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	GTEx&tcga_normals:1/3694=0.03%,ADK->adenosine_kinase,chr10:75910960-76469061:+,KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B	ECGI10_OESOPHAGUS	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	FAM222B--PHF12	3	4	FAM222B	3499	chr17:27161311:-	PHF12	26936	chr17:27248826:-	ONLY_REF_SPLICE	YES	10	38	0.41	0.16	0.0274	0.0366	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	ECGI10_OESOPHAGUS	0.16	0.41	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MIR205HG--FTH1	4	0	MIR205HG	4453	chr1:209605617:+	FTH1	8227	chr11:61734925:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0366	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	ECGI10_OESOPHAGUS	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	VEGFA--LCN2	4	0	VEGFA	16298	chr6:43753288:+	LCN2	20617	chr9:130911732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0366	0	VEGFA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:43737921-43754224:+,vascular_endothelial_growth_factor_A,LCN2->chr9:130911350-130915734:+,lipocalin_2	ECGI10_OESOPHAGUS	1	1	0.0366	TRUE	0	0	0	2	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	FAM222B--PHF12	1	11	FAM222B	4777	chr17:27139176:-	PHF12	26936	chr17:27248826:-	ONLY_REF_SPLICE	NO	19	38	0.39	0.24	0.0091	0.1006	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	ECGI10_OESOPHAGUS	0.24	0.39	0.1097	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	SGTB--GRAMD1A	3	2	SGTB	7620	chr5:64981195:-	GRAMD1A	19761	chr19:35486898:+	ONLY_REF_SPLICE	YES	16	0	0.24	1	0.0274	0.0183	SGTB->chr5:64961755-65018862:-,small_glutamine_rich_tetratricopeptide_repeat_containing_beta,GRAMD1A->GRAM_domain_containing_1A,chr19:35485688-35517375:+	ECGI10_OESOPHAGUS	0.24	1	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	C11orf49--AC008163.4	3	1	C11orf49	3405	chr11:47008861:+	AC008163.4	28171	chr7:81157892:-	ONLY_REF_SPLICE	YES	52	0	0.07	1	0.0274	0.0091	C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49,AC008163.4->chr7:81157719-81191099:-	ECGI10_OESOPHAGUS	0.07	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	F3--LCN2	3	0	F3	1181	chr1:95007176:-	LCN2	11477	chr9:130911762:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,LCN2->chr9:130911350-130915734:+,lipocalin_2	ECGI10_OESOPHAGUS	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	VEGFA--LCN2	3	0	VEGFA	1568	chr6:43738488:+	LCN2	20626	chr9:130911741:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	VEGFA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:43737921-43754224:+,vascular_endothelial_growth_factor_A,LCN2->chr9:130911350-130915734:+,lipocalin_2	ECGI10_OESOPHAGUS	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	REV3L--FYN	2	2	REV3L	1966	chr6:111803953:-	FYN	60258	chr6:112101838:-	ONLY_REF_SPLICE	YES	6	7	0.4	0.36	0.0183	0.0183	GTEx_FI:{Skin=[count:2=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Cells_-_Transformed_fibroblasts=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-	ECGI10_OESOPHAGUS	0.36	0.4	0.0366	TRUE	1	2	0	1	2	TRUE	ACH-000305
ECGI10_OESOPHAGUS	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0.0091	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	ECGI10_OESOPHAGUS	1	1	0.0274	TRUE	0	10	0	4	10	TRUE	ACH-000305
ECGI10_OESOPHAGUS	CPSF6--TP53BP1	2	0	CPSF6	11046	chr12:69656342:+	TP53BP1	30672	chr15:43762264:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GTEx_v2:{count=2;pct=0.02%;dist=Pituitary=1,Cells_-_EBV-transformed_lymphocytes=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	3	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MIR205HG--FAIM	2	0	MIR205HG	1589	chr1:209602753:+	FAIM	12252	chr3:138340249:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,FAIM->Fas_apoptotic_inhibitory_molecule,Oncogene{Bushman},chr3:138327448-138352218:+	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MYO1E--TP53BP1	2	0	MYO1E	18913	chr15:59497599:-	TP53BP1	55780	chr15:43730614:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	MYO1E->chr15:59427113-59665099:-,myosin_IE,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	PPP4R2--PCID2	2	0	PPP4R2	2374	chr3:73047309:+	PCID2	19668	chr13:113854830:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	PPP4R2->chr3:73045936-73118350:+,protein_phosphatase_4_regulatory_subunit_2,PCID2->PCI_domain_containing_2,chr13:113831891-113863029:-	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	PTBP1--TMEM259	2	0	PTBP1	1431	chr19:797505:+	TMEM259	17849	chr19:1014472:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GTEx&tcga_normals:1/3694=0.03%,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1,TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	RPS3--UBB	2	0	RPS3	2292	chr11:75111821:+	UBB	14087	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UBB->chr17:16284112-16286059:+,ubiquitin_B	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	6	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	STUB1--RNASEH2C	2	0	STUB1	3058	chr16:732281:+	RNASEH2C	7178	chr11:65487888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	STUB1->STIP1_homology_and_U-box_containing_protein_1,chr16:730224-732870:+,RNASEH2C->chr11:65482367-65488418:-,ribonuclease_H2_subunit_C	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	FAM83D--PPP1R16B	1	2	FAM83D	3907	chr20:37576643:+	PPP1R16B	10518	chr20:37464468:+	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0091	0.0183	LOCAL_REARRANGEMENT:+:[3288],FAM83D->chr20:37554955-37581703:+,family_with_sequence_similarity_83_member_D,PPP1R16B->Oncogene{Bushman},chr20:37434348-37551667:+,protein_phosphatase_1_regulatory_subunit_16B	ECGI10_OESOPHAGUS	0.25	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	IL1RAPL1--REPS2	1	2	IL1RAPL1	2755	chrX:28807542:+	REPS2	20703	chrX:17040246:+	ONLY_REF_SPLICE	NO	0	6	1	0.33	0.0091	0.0183	IL1RAPL1->chrX:28605516-29974840:+,interleukin_1_receptor_accessory_protein_like_1,REPS2->Oncogene{Bushman},RALBP1_associated_Eps_domain_containing_2,chrX:16964814-17171395:+	ECGI10_OESOPHAGUS	0.33	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	PKN2--RP5-908D6.1	1	2	PKN2	6391	chr1:89237562:+	RP5-908D6.1	27907	chr1:89797621:+	ONLY_REF_SPLICE	NO	26	0	0.1	1	0.0091	0.0183	PKN2->chr1:89149905-89301938:+,protein_kinase_N2,RP5-908D6.1->chr1:89790205-89800563:+	ECGI10_OESOPHAGUS	0.1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0091	0.0091	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	ECGI10_OESOPHAGUS	1	1	0.0182	TRUE	0	4	1	7	4	TRUE	ACH-000305
ECGI10_OESOPHAGUS	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0091	0.0091	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	ECGI10_OESOPHAGUS	1	1	0.0182	TRUE	0	2	0	5	2	TRUE	ACH-000305
ECGI10_OESOPHAGUS	SNAPC1--RP11-799P8.1	1	1	SNAPC1	7963	chr14:62249115:+	RP11-799P8.1	15949	chr14:82074045:-	ONLY_REF_SPLICE	YES	51	0	0.04	1	0.0091	0.0091	SNAPC1->chr14:62229075-62263146:+,small_nuclear_RNA_activating_complex_polypeptide_1,RP11-799P8.1->chr14:82071691-82089405:-	ECGI10_OESOPHAGUS	0.04	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000305
MDAMB415_BREAST	SHANK2--OTUB1	130	17	SHANK2	52998	chr11:70331419:-	OTUB1	68065	chr11:63764002:+	ONLY_REF_SPLICE	YES	3	423	0.98	0.26	1.7335	0.2267	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,OTUB1->OTU_deubiquitinase,_ubiquitin_aldehyde_binding_1,chr11:63753325-63769283:+	MDAMB415_BREAST	0.26	0.98	1.9602	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	RAD9A--SHANK2	63	36	RAD9A	3086	chr11:67161261:+	SHANK2	59419	chr11:70333825:-	ONLY_REF_SPLICE	YES	70	10	0.59	0.91	0.8401	0.48	RAD9A->Oncogene{Bushman},RAD9_checkpoint_clamp_component_A,chr11:67159176-67165881:+,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	MDAMB415_BREAST	0.59	0.91	1.3201	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	ZNF331--ANO1	31	26	ZNF331	7495	chr19:54042536:+	ANO1	21169	chr11:69924648:+	INCL_NON_REF_SPLICE	YES	10	0	0.85	1	0.4134	0.3467	ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,ANO1->anoctamin_1,chr11:69924408-70035634:+	MDAMB415_BREAST	0.85	1	0.7601	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	LRP5--RP11-554A11.9	28	29	LRP5	6121	chr11:68133170:+	RP11-554A11.9	35381	chr11:68926914:+	ONLY_REF_SPLICE	YES	50	6	0.53	0.9	0.3734	0.3867	LRP5->LDL_receptor_related_protein_5,Oncogene{Bushman},chr11:68080077-68216743:+,RP11-554A11.9->chr11:68923378-68927220:+	MDAMB415_BREAST	0.53	0.9	0.7601	TRUE	0	1	0	1	1	TRUE	ACH-000876
MDAMB415_BREAST	LRIG1--FHIT	17	0	LRIG1	5520	chr3:66512862:-	FHIT	36667	chr3:61027771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2267	0	LRIG1->Oncogene{Bushman},chr3:66429221-66551687:-,leucine-rich_repeats_and_immunoglobulin_like_domains_1,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	MDAMB415_BREAST	1	1	0.2267	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	FMN2--RYR2	12	5	FMN2	6146	chr1:240286645:+	RYR2	131018	chr1:237923076:+	ONLY_REF_SPLICE	YES	12	0	0.59	1	0.16	0.0667	FMN2->chr1:240177648-240638489:+,formin_2,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	MDAMB415_BREAST	0.59	1	0.2267	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	OBFC1--CCSER2	10	4	OBFC1	9778	chr10:105648830:-	CCSER2	22118	chr10:86185487:+	ONLY_REF_SPLICE	YES	24	7	0.37	0.67	0.1333	0.0533	OBFC1->chr10:105642300-105677963:-,oligonucleotide/oligosaccharide_binding_fold_containing_1,CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2	MDAMB415_BREAST	0.37	0.67	0.1866	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	LRP5--RP11-554A11.9	3	28	LRP5	6117	chr11:68133166:+	RP11-554A11.9	35381	chr11:68926914:+	INCL_NON_REF_SPLICE	YES	48	6	0.39	0.84	0.04	0.3734	LRP5->LDL_receptor_related_protein_5,Oncogene{Bushman},chr11:68080077-68216743:+,RP11-554A11.9->chr11:68923378-68927220:+	MDAMB415_BREAST	0.39	0.84	0.4134	TRUE	0	1	0	1	1	TRUE	ACH-000876
MDAMB415_BREAST	RAD9A--SHANK2	4	8	RAD9A	2906	chr11:67161081:+	SHANK2	59419	chr11:70333825:-	ONLY_REF_SPLICE	YES	74	10	0.14	0.55	0.0533	0.1067	RAD9A->Oncogene{Bushman},RAD9_checkpoint_clamp_component_A,chr11:67159176-67165881:+,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	MDAMB415_BREAST	0.14	0.55	0.16	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	FMN2--RYR2	4	3	FMN2	6146	chr1:240286645:+	RYR2	133169	chr1:237934107:+	ONLY_REF_SPLICE	YES	12	0	0.37	1	0.0533	0.04	FMN2->chr1:240177648-240638489:+,formin_2,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	MDAMB415_BREAST	0.37	1	0.0933	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	FMN2--RYR2	3	1	FMN2	6146	chr1:240286645:+	RYR2	136468	chr1:237941966:+	ONLY_REF_SPLICE	YES	12	6	0.25	0.4	0.04	0.0133	FMN2->chr1:240177648-240638489:+,formin_2,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	MDAMB415_BREAST	0.25	0.4	0.0533	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	PLD3--SCGB2A2	3	0	PLD3	11455	chr19:40882634:+	SCGB2A2	17991	chr11:62038354:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,SCGB2A2->chr11:62037627-62040628:+,secretoglobin_family_2A_member_2	MDAMB415_BREAST	1	1	0.04	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	RBBP8--TAF4B	2	1	RBBP8	20867	chr18:20571012:+	TAF4B	50573	chr18:23937654:+	ONLY_REF_SPLICE	YES	40	1	0.07	0.75	0.0267	0.0133	RBBP8->Oncogene{Bushman},chr18:20378224-20606451:+,retinoblastoma_binding_protein_8,TAF4B->TATA-box_binding_protein_associated_factor_4b,chr18:23805900-23971649:+	MDAMB415_BREAST	0.07	0.75	0.04	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	LRIG1--FHIT	2	0	LRIG1	5520	chr3:66512862:-	FHIT	37720	chr3:60807705:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	LRIG1->Oncogene{Bushman},chr3:66429221-66551687:-,leucine-rich_repeats_and_immunoglobulin_like_domains_1,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	MDAMB415_BREAST	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	MAP4K3--TPT1	2	0	MAP4K3	33636	chr2:39481591:-	TPT1	44115	chr13:45911523:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	MAP4K3->chr2:39476407-39664453:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_3,TPT1->chr13:45911008-45915505:-,tumor_protein,_translationally-controlled_1	MDAMB415_BREAST	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	MYEOV--PPFIA1	2	0	MYEOV	1439	chr11:69062043:+	PPFIA1	46814	chr11:70218318:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	MDAMB415_BREAST	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	RCC1--KIF16B	2	0	RCC1	2175	chr1:28834672:+	KIF16B	45927	chr20:16337097:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,KIF16B->chr20:16252749-16554078:-,kinesin_family_member_16B	MDAMB415_BREAST	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	SETD8--CDK2AP1	1	1	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	NO	1	29	0.67	0.06	0.0133	0.0133	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	MDAMB415_BREAST	0.06	0.67	0.0266	TRUE	0	0	0	18	0	TRUE	ACH-000876
EN_ENDOMETRIUM	PDHX--CAT	895	302	PDHX	3068	chr11:34953031:+	CAT	29038	chr11:34485652:+	ONLY_REF_SPLICE	YES	148	44	0.89	0.96	9.0375	3.0495	YOSHIHARA_TCGA_num_samples[BRCA:2],PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CAT->catalase,chr11:34460472-34493609:+	EN_ENDOMETRIUM	0.89	0.96	12.087	TRUE	0	0	0	2	0	TRUE	ACH-000978
EN_ENDOMETRIUM	EPS15--CALR4P	238	35	EPS15	1130	chr1:51984871:-	CALR4P	40825	chr1:52035422:-	ONLY_REF_SPLICE	YES	28	3	0.91	0.99	2.4033	0.3534	LOCAL_REARRANGEMENT:-:[42538],EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,CALR4P->calreticulin_4,_pseudogene,chr1:52027538-52060569:-	EN_ENDOMETRIUM	0.91	0.99	2.7567	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	SRPK2--PUS7	155	68	SRPK2	2897	chr7:105029095:-	PUS7	46953	chr7:105099706:-	ONLY_REF_SPLICE	YES	49	42	0.82	0.84	1.5651	0.6866	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	EN_ENDOMETRIUM	0.82	0.84	2.2517	TRUE	0	2	0	2	1	TRUE	ACH-000978
EN_ENDOMETRIUM	PDHX--CAT	3	309	PDHX	3076	chr11:34953039:+	CAT	27899	chr11:34482798:+	INCL_NON_REF_SPLICE	YES	155	44	0.67	0.88	0.0303	3.1202	YOSHIHARA_TCGA_num_samples[BRCA:2],PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CAT->catalase,chr11:34460472-34493609:+	EN_ENDOMETRIUM	0.67	0.88	3.1505	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	PDHX--CAT	3	304	PDHX	3068	chr11:34953031:+	CAT	27899	chr11:34482798:+	ONLY_REF_SPLICE	YES	148	44	0.67	0.87	0.0303	3.0697	YOSHIHARA_TCGA_num_samples[BRCA:2],PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CAT->catalase,chr11:34460472-34493609:+	EN_ENDOMETRIUM	0.67	0.87	3.1	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	DENND2C--CSDE1	58	0	DENND2C	1440	chr1:115212604:-	CSDE1	36786	chr1:115282511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5857	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[46491],DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	EN_ENDOMETRIUM	1	1	0.5857	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	FOXO3--LACE1	51	11	FOXO3	2995	chr6:108883032:+	LACE1	30074	chr6:108840900:+	ONLY_REF_SPLICE	YES	15	0	0.81	1	0.515	0.1111	LOCAL_REARRANGEMENT:+:[33039],FOXO3->Oncogene{Bushman},chr6:108881038-109005977:+,forkhead_box_O3,LACE1->chr6:108616098-108847999:+,lactation_elevated_1	EN_ENDOMETRIUM	0.81	1	0.6261	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	SRPK2--PUS7	26	77	SRPK2	4033	chr7:104946883:-	PUS7	46953	chr7:105099706:-	ONLY_REF_SPLICE	YES	47	42	0.69	0.71	0.2625	0.7775	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	EN_ENDOMETRIUM	0.69	0.71	1.04	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	RGS3--BSPRY	31	15	RGS3	4942	chr9:116226161:+	BSPRY	46311	chr9:116116520:+	ONLY_REF_SPLICE	YES	21	1	0.69	0.98	0.313	0.1515	LOCAL_REARRANGEMENT:+:[73498],RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3,BSPRY->B-box_and_SPRY_domain_containing,Oncogene{Bushman},chr9:116111821-116133513:+	EN_ENDOMETRIUM	0.69	0.98	0.4645	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	PDHX--CAT	2	128	PDHX	1987	chr11:34938362:+	CAT	29038	chr11:34485652:+	ONLY_REF_SPLICE	YES	105	44	0.55	0.75	0.0202	1.2925	YOSHIHARA_TCGA_num_samples[BRCA:2],PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CAT->catalase,chr11:34460472-34493609:+	EN_ENDOMETRIUM	0.55	0.75	1.3127	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	C2CD2--BARX2	28	4	C2CD2	17364	chr21:43319162:-	BARX2	27458	chr11:129306646:+	ONLY_REF_SPLICE	YES	11	0	0.74	1	0.2827	0.0404	C2CD2->C2_calcium-dependent_domain_containing_2,chr21:43305221-43373999:-,BARX2->BARX_homeobox_2,chr11:129245835-129322171:+	EN_ENDOMETRIUM	0.74	1	0.3231	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	UBE2D3--SLC9B1	25	12	UBE2D3	1182	chr4:103789872:-	SLC9B1	31207	chr4:103833286:-	ONLY_REF_SPLICE	YES	4	1	0.9	0.97	0.2524	0.1212	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[16152],UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	EN_ENDOMETRIUM	0.9	0.97	0.3736	TRUE	0	2	0	1	2	TRUE	ACH-000978
EN_ENDOMETRIUM	UBE2D3--SLC9B1	24	9	UBE2D3	1182	chr4:103789872:-	SLC9B1	31799	chr4:103832694:-	ONLY_REF_SPLICE	YES	4	3	0.89	0.92	0.2423	0.0909	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[16152],UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	EN_ENDOMETRIUM	0.89	0.92	0.3332	TRUE	0	2	0	1	2	TRUE	ACH-000978
EN_ENDOMETRIUM	SRPK2--PUS7	4	71	SRPK2	3923	chr7:104946993:-	PUS7	46953	chr7:105099706:-	INCL_NON_REF_SPLICE	YES	52	42	0.59	0.64	0.0404	0.7169	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	EN_ENDOMETRIUM	0.59	0.64	0.7573	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	SRPK2--PUS7	3	74	SRPK2	3969	chr7:104946947:-	PUS7	46953	chr7:105099706:-	INCL_NON_REF_SPLICE	YES	53	42	0.59	0.65	0.0303	0.7472	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	EN_ENDOMETRIUM	0.59	0.65	0.7775	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	SRPK2--PUS7	1	69	SRPK2	2897	chr7:105029095:-	PUS7	32129	chr7:105148991:-	ONLY_REF_SPLICE	YES	49	70	0.59	0.5	0.0101	0.6967	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	EN_ENDOMETRIUM	0.5	0.59	0.7068	TRUE	0	2	0	1	2	TRUE	ACH-000978
EN_ENDOMETRIUM	TRAF3--TECPR2	18	0	TRAF3	1200	chr14:103244012:+	TECPR2	28338	chr14:102873675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1818	0	TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	EN_ENDOMETRIUM	1	1	0.1818	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	AP003900.6--AC008079.9	17	3	AP003900.6	3299	chr21:11174002:+	AC008079.9	9069	chr22:18682508:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1717	0.0303	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	EN_ENDOMETRIUM	1	1	0.202	TRUE	0	1	0	3	1	TRUE	ACH-000978
EN_ENDOMETRIUM	FUZ--LMTK3	17	3	FUZ	7255	chr19:50311671:-	LMTK3	14482	chr19:49013430:-	ONLY_REF_SPLICE	YES	109	0	0.16	1	0.1717	0.0303	FUZ->chr19:50310126-50320633:-,fuzzy_planar_cell_polarity_protein,LMTK3->chr19:48988528-49016446:-,lemur_tyrosine_kinase_3	EN_ENDOMETRIUM	0.16	1	0.202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	CTD-3105H18.16--PRDX2	16	1	CTD-3105H18.16	1171	chr19:12551726:-	PRDX2	7257	chr19:12912084:-	ONLY_REF_SPLICE	YES	3	162	0.85	0.09	0.1616	0.0101	CTD-3105H18.16->chr19:12502763-12551896:-,PRDX2->chr19:12907634-12912694:-,peroxiredoxin_2	EN_ENDOMETRIUM	0.09	0.85	0.1717	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	SRPK2--PUS7	3	44	SRPK2	2754	chr7:105029238:-	PUS7	46953	chr7:105099706:-	ONLY_REF_SPLICE	YES	42	42	0.53	0.53	0.0303	0.4443	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	EN_ENDOMETRIUM	0.53	0.53	0.4746	TRUE	0	2	0	2	1	TRUE	ACH-000978
EN_ENDOMETRIUM	RP11-438J1.1--IRAK2	13	3	RP11-438J1.1	7546	chr3:10320718:+	IRAK2	21870	chr3:10268055:+	ONLY_REF_SPLICE	YES	102	1	0.14	0.94	0.1313	0.0303	LOCAL_REARRANGEMENT:+:[5629],RP11-438J1.1->chr3:10291056-10327480:+,IRAK2->Oncogene{Bushman},chr3:10206549-10285427:+,interleukin_1_receptor_associated_kinase_2	EN_ENDOMETRIUM	0.14	0.94	0.1616	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	ZC3HAV1L--KLRG2	10	10	ZC3HAV1L	2487	chr7:138719289:-	KLRG2	10702	chr7:139164993:-	ONLY_REF_SPLICE	YES	10	2	0.67	0.91	0.101	0.101	ZC3HAV1L->chr7:138710452-138720775:-,zinc_finger_CCCH-type_containing,_antiviral_1_like,KLRG2->chr7:139137436-139168458:-,killer_cell_lectin_like_receptor_G2	EN_ENDOMETRIUM	0.67	0.91	0.202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	ADAM32--ADAM9	7	5	ADAM32	5476	chr8:38994237:+	ADAM9	50905	chr8:38899465:+	ONLY_REF_SPLICE	YES	6	163	0.67	0.07	0.0707	0.0505	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[1846],ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+,ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+	EN_ENDOMETRIUM	0.07	0.67	0.1212	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	DENND2C--CSDE1	8	0	DENND2C	1430	chr1:115212614:-	CSDE1	36786	chr1:115282511:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0808	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[46491],DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	EN_ENDOMETRIUM	1	1	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	PDHX--CAT	1	27	PDHX	1987	chr11:34938362:+	CAT	30169	chr11:34489835:+	ONLY_REF_SPLICE	YES	105	121	0.21	0.19	0.0101	0.2726	YOSHIHARA_TCGA_num_samples[BRCA:2],PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CAT->catalase,chr11:34460472-34493609:+	EN_ENDOMETRIUM	0.19	0.21	0.2827	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	KIF13A--TPMT	7	0	KIF13A	1570	chr6:17987285:-	TPMT	57872	chr6:18132408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0707	0	{Klijn_CCL:Head-Neck=1,Lymphoid=1},KIF13A->chr6:17759414-17987854:-,kinesin_family_member_13A,TPMT->chr6:18128542-18155305:-,thiopurine_S-methyltransferase	EN_ENDOMETRIUM	1	1	0.0707	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MCU--FAM149B1	5	1	MCU	1171	chr10:74452059:+	FAM149B1	29975	chr10:74987818:+	ONLY_REF_SPLICE	YES	16	15	0.27	0.29	0.0505	0.0101	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1	EN_ENDOMETRIUM	0.27	0.29	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	RGS3--BSPRY	5	0	RGS3	3789	chr9:116224481:+	BSPRY	46311	chr9:116116520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0505	0	LOCAL_REARRANGEMENT:+:[73498],RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3,BSPRY->B-box_and_SPRY_domain_containing,Oncogene{Bushman},chr9:116111821-116133513:+	EN_ENDOMETRIUM	1	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	FGF22--CDC34	4	2	FGF22	1261	chr19:640139:+	CDC34	8577	chr19:535837:+	ONLY_REF_SPLICE	YES	1	60	0.86	0.09	0.0404	0.0202	LOCAL_REARRANGEMENT:+:[97782],FGF22->chr19:639879-643703:+,fibroblast_growth_factor_22,CDC34->Oncogene{Bushman},cell_division_cycle_34,chr19:531714-542097:+	EN_ENDOMETRIUM	0.09	0.86	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	UBE2D3--SLC9B1	4	1	UBE2D3	1182	chr4:103789872:-	SLC9B1	33903	chr4:103827801:-	ONLY_REF_SPLICE	YES	4	6	0.56	0.45	0.0404	0.0101	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[16152],UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	EN_ENDOMETRIUM	0.45	0.56	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	DENND2C--CSDE1	4	0	DENND2C	1440	chr1:115212604:-	CSDE1	37985	chr1:115280693:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[46491],DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	EN_ENDOMETRIUM	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	ZC3HAV1L--KLRG2	3	2	ZC3HAV1L	2487	chr7:138719289:-	KLRG2	12323	chr7:139138960:-	ONLY_REF_SPLICE	YES	10	11	0.33	0.31	0.0303	0.0202	ZC3HAV1L->chr7:138710452-138720775:-,zinc_finger_CCCH-type_containing,_antiviral_1_like,KLRG2->chr7:139137436-139168458:-,killer_cell_lectin_like_receptor_G2	EN_ENDOMETRIUM	0.31	0.33	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MCU--FAM149B1	3	1	MCU	5898	chr10:74475660:+	FAM149B1	29975	chr10:74987818:+	ONLY_REF_SPLICE	YES	33	15	0.11	0.21	0.0303	0.0101	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1	EN_ENDOMETRIUM	0.11	0.21	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	ZC3HAV1L--KLRG2	1	7	ZC3HAV1L	2487	chr7:138719289:-	KLRG2	11177	chr7:139164518:-	ONLY_REF_SPLICE	YES	10	1	0.44	0.89	0.0101	0.0707	ZC3HAV1L->chr7:138710452-138720775:-,zinc_finger_CCCH-type_containing,_antiviral_1_like,KLRG2->chr7:139137436-139168458:-,killer_cell_lectin_like_receptor_G2	EN_ENDOMETRIUM	0.44	0.89	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	AP003900.6--AC008079.9	2	2	AP003900.6	3299	chr21:11174002:+	AC008079.9	10621	chr22:18679010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0.0202	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	EN_ENDOMETRIUM	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MCU--FAM149B1	2	1	MCU	8107	chr10:74520430:+	FAM149B1	29975	chr10:74987818:+	ONLY_REF_SPLICE	YES	34	15	0.08	0.17	0.0202	0.0101	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1	EN_ENDOMETRIUM	0.08	0.17	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	ARID4B--CCSAP	2	0	ARID4B	34552	chr1:235324208:-	CCSAP	49336	chr1:229462753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	ARID4B->AT-rich_interaction_domain_4B,chr1:235294949-235491534:-,CCSAP->centriole,_cilia_and_spindle_associated_protein,chr1:229456758-229479041:-	EN_ENDOMETRIUM	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	CLIC4--SRRM1	2	0	CLIC4	3416	chr1:25124342:+	SRRM1	20487	chr1:24972475:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[72090],CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	EN_ENDOMETRIUM	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	DENND2C--CSDE1	2	0	DENND2C	1440	chr1:115212604:-	CSDE1	36951	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[46491],DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	EN_ENDOMETRIUM	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	TXNRD1--STAB2	2	0	TXNRD1	11664	chr12:104682818:+	STAB2	87427	chr12:104129269:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,STAB2->chr12:103981051-104160505:+,stabilin_2	EN_ENDOMETRIUM	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	AC104532.2--CD37	1	1	AC104532.2	1241	chr19:5905092:+	CD37	7467	chr19:49840166:+	ONLY_REF_SPLICE	YES	2	9	0.5	0.18	0.0101	0.0101	AC104532.2->chr19:5904852-5914718:+,CD37->CD37_molecule,chr19:49838428-49846592:+	EN_ENDOMETRIUM	0.18	0.5	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	RP11-983P16.4--RANBP10	1	1	RP11-983P16.4	2043	chr12:53447180:-	RANBP10	24278	chr16:67768945:-	ONLY_REF_SPLICE	NO	7	23	0.22	0.08	0.0101	0.0101	RP11-983P16.4->chr12:53408380-53448222:-,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	EN_ENDOMETRIUM	0.08	0.22	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000978
S117_THYROID	CTD-2314B22.3--RP11-536C10.19	30	0	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2984	0	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	S117_THYROID	1	1	0.2984	TRUE	0	2	0	9	2	TRUE	ACH-000037
S117_THYROID	PTPRM--PTPN2	15	6	PTPRM	29056	chr18:8253412:+	PTPN2	51452	chr18:12929602:-	INCL_NON_REF_SPLICE	YES	56	0	0.27	1	0.1492	0.0597	GTEx&tcga_normals:1/3694=0.03%,PROTCLUST,PTPRM->chr18:7566780-8406859:+,protein_tyrosine_phosphatase,_receptor_type_M,PTPN2->chr18:12785477-12929642:-,protein_tyrosine_phosphatase,_non-receptor_type_2	S117_THYROID	0.27	1	0.2089	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	JUN--MT2A	8	0	JUN	2308	chr1:59248478:-	MT2A	7705	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0796	0	JUN->ArcherDX_panel,FoundationOne_panel,Jun_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr1:59246465-59249785:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	S117_THYROID	1	1	0.0796	TRUE	0	0	0	6	0	TRUE	ACH-000037
S117_THYROID	FAM168B--PGAP1	7	1	FAM168B	1247	chr2:131850787:-	PGAP1	17388	chr2:197784874:-	ONLY_REF_SPLICE	YES	98	3	0.08	0.73	0.0696	0.0099	FAM168B->chr2:131805449-131851033:-,family_with_sequence_similarity_168_member_B,PGAP1->chr2:197697728-197792520:-,post-GPI_attachment_to_proteins_1	S117_THYROID	0.08	0.73	0.0795	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	CFLAR--METTL21A	6	0	CFLAR	1378	chr2:201981204:+	METTL21A	41548	chr2:208489128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0597	0	CFLAR->CASP8_and_FADD_like_apoptosis_regulator,Oncogene{Bushman},chr2:201980827-202041410:+,METTL21A->Oncogene{Bushman},chr2:208445355-208490652:-,methyltransferase_like_21A	S117_THYROID	1	1	0.0597	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	TENM4--AUTS2	4	3	TENM4	7069	chr11:78926853:-	AUTS2	70166	chr7:69755354:+	ONLY_REF_SPLICE	YES	7	3	0.5	0.7	0.0398	0.0298	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	S117_THYROID	0.5	0.7	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	FAM171B--ITGAV	4	1	FAM171B	1441	chr2:187559138:+	ITGAV	18698	chr2:187466748:+	ONLY_REF_SPLICE	YES	2	31	0.71	0.14	0.0398	0.0099	LOCAL_REARRANGEMENT:+:[13070],FAM171B->chr2:187558698-187630685:+,family_with_sequence_similarity_171_member_B,ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V	S117_THYROID	0.14	0.71	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	TENM4--AUTS2	3	4	TENM4	8166	chr11:78859755:-	AUTS2	70166	chr7:69755354:+	ONLY_REF_SPLICE	YES	6	3	0.54	0.7	0.0298	0.0398	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	S117_THYROID	0.54	0.7	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	3590	chr22:16189032:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	S117_THYROID	1	1	0.0298	TRUE	0	0	0	3	0	TRUE	ACH-000037
S117_THYROID	TENM4--AUTS2	2	1	TENM4	7069	chr11:78926853:-	AUTS2	72551	chr7:69900738:+	ONLY_REF_SPLICE	YES	7	3	0.3	0.5	0.0199	0.0099	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	S117_THYROID	0.3	0.5	0.0298	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	ADAMTSL1--IFT80	2	0	ADAMTSL1	3576	chr9:18533290:+	IFT80	62840	chr3:160037727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+,IFT80->chr3:159974774-160117668:-,intraflagellar_transport_80	S117_THYROID	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	CDC42--HP1BP3	2	0	CDC42	6887	chr1:22413359:+	HP1BP3	22058	chr1:21097566:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	S117_THYROID	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	NRAS--CSDE1	2	0	NRAS	3024	chr1:115256421:-	CSDE1	32167	chr1:115263338:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LOCAL_REARRANGEMENT:-:[19],NRAS->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr1:115247090-115259515:-,neuroblastoma_RAS_viral_oncogene_homolog,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	S117_THYROID	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	RP11-400N13.3--RP11-191N8.2	2	0	RP11-400N13.3	2344	chr1:222231756:-	RP11-191N8.2	6776	chr1:222013795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	RP11-400N13.3->chr1:222215047-222238105:-,RP11-191N8.2->chr1:222001008-222014008:-	S117_THYROID	1	1	0.0199	TRUE	0	16	0	2	11	TRUE	ACH-000037
S117_THYROID	ZFP90--ANKLE2	2	0	ZFP90	2603	chr16:68567758:+	ANKLE2	24894	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	ZFP90->ZFP90_zinc_finger_protein,chr16:68563993-68609975:+,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	S117_THYROID	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	TENM4--AUTS2	1	1	TENM4	8166	chr11:78859755:-	AUTS2	72551	chr7:69900738:+	ONLY_REF_SPLICE	YES	6	3	0.25	0.4	0.0099	0.0099	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	S117_THYROID	0.25	0.4	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000037
HOP62_LUNG	CFL1--RP11-480C22.1	49	38	CFL1	2955	chr11:65626702:-	RP11-480C22.1	17058	chr11:127204919:+	ONLY_REF_SPLICE	YES	8	0	0.92	1	0.5741	0.4452	CFL1->chr11:65590493-65629497:-,cofilin_1,RP11-480C22.1->chr11:127140957-127206928:+	HOP62_LUNG	0.92	1	1.0193	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	GRAMD4--ATXN10	50	4	GRAMD4	2229	chr22:46973187:+	ATXN10	36048	chr22:46134611:+	ONLY_REF_SPLICE	YES	0	668	1	0.07	0.5858	0.0469	GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+,ATXN10->ataxin_10,chr22:46067678-46241187:+	HOP62_LUNG	0.07	1	0.6327	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	MEF2D--IQGAP3	45	9	MEF2D	1343	chr1:156470278:-	IQGAP3	36742	chr1:156510708:-	ONLY_REF_SPLICE	YES	10	84	0.84	0.39	0.5272	0.1054	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	HOP62_LUNG	0.39	0.84	0.6326	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	CFL1--RP11-480C22.1	31	40	CFL1	2969	chr11:65626688:-	RP11-480C22.1	17058	chr11:127204919:+	INCL_NON_REF_SPLICE	YES	8	0	0.9	1	0.3632	0.4687	CFL1->chr11:65590493-65629497:-,cofilin_1,RP11-480C22.1->chr11:127140957-127206928:+	HOP62_LUNG	0.9	1	0.8319	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	ENOSF1--TEF	25	19	ENOSF1	13377	chr18:683246:-	TEF	28612	chr22:41783355:+	ONLY_REF_SPLICE	YES	184	10	0.19	0.81	0.2929	0.2226	ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1,TEF->TEF,_PAR_bZIP_transcription_factor,chr22:41763337-41795330:+	HOP62_LUNG	0.19	0.81	0.5155	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	MEF2D--IQGAP3	12	13	MEF2D	2397	chr1:156469224:-	IQGAP3	36742	chr1:156510708:-	ONLY_REF_SPLICE	YES	17	84	0.6	0.23	0.1406	0.1523	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	HOP62_LUNG	0.23	0.6	0.2929	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	SYNE2--ESR2	10	2	SYNE2	99731	chr14:64626160:+	ESR2	154348	chr14:64716397:-	ONLY_REF_SPLICE	YES	22	0	0.35	1	0.1172	0.0234	SYNE2->Oncogene{Bushman},chr14:64319683-64693165:+,spectrin_repeat_containing_nuclear_envelope_protein_2,ESR2->Oncogene{Bushman},chr14:64550950-64804830:-,estrogen_receptor_2	HOP62_LUNG	0.35	1	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	CFL1--RP11-480C22.1	6	0	CFL1	1770	chr11:65628728:-	RP11-480C22.1	17058	chr11:127204919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0703	0	CFL1->chr11:65590493-65629497:-,cofilin_1,RP11-480C22.1->chr11:127140957-127206928:+	HOP62_LUNG	1	1	0.0703	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	RNF13--C12orf50	5	1	RNF13	1646	chr3:149531140:+	C12orf50	25428	chr12:88391967:-	ONLY_REF_SPLICE	YES	66	0	0.08	1	0.0586	0.0117	RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,C12orf50->chr12:88373816-88427814:-,chromosome_12_open_reading_frame_50	HOP62_LUNG	0.08	1	0.0703	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	ESR2--SYNE2	4	2	ESR2	15616	chr14:64716264:-	SYNE2	157225	chr14:64685926:+	ONLY_REF_SPLICE	YES	0	47	1	0.11	0.0469	0.0234	ESR2->Oncogene{Bushman},chr14:64550950-64804830:-,estrogen_receptor_2,SYNE2->Oncogene{Bushman},chr14:64319683-64693165:+,spectrin_repeat_containing_nuclear_envelope_protein_2	HOP62_LUNG	0.11	1	0.0703	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	AHCYL1--RERE	2	0	AHCYL1	1487	chr1:110527794:+	RERE	24814	chr1:8716500:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+,RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-	HOP62_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	PRKCH--HIF1A	2	0	PRKCH	27174	chr14:61952374:+	HIF1A	45882	chr14:62187100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	HOP62_LUNG	1	1	0.0234	TRUE	0	3	0	5	0	TRUE	ACH-000861
HOP62_LUNG	SCP2--BUB1	2	0	SCP2	13329	chr1:53453808:+	BUB1	50190	chr2:111399811:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	SCP2->chr1:53392901-53517375:+,sterol_carrier_protein_2,BUB1->BUB1_mitotic_checkpoint_serine/threonine_kinase,Oncogene{Bushman},chr2:111395275-111435691:-	HOP62_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000861
IMR32_AUTONOMIC_GANGLIA	ANTXR1--AC011897.2	1964	559	ANTXR1	19545	chr2:69397421:+	AC011897.2	31797	chr2:14756552:+	ONLY_REF_SPLICE	YES	126	0	0.95	1	22.9051	6.5193	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,AC011897.2->chr2:14756552-14770316:+	IMR32_AUTONOMIC_GANGLIA	0.95	1	29.4244	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	ANTXR1--AC011897.2	1	439	ANTXR1	18503	chr2:69379396:+	AC011897.2	31797	chr2:14756552:+	ONLY_REF_SPLICE	YES	203	0	0.68	1	0.0117	5.1198	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,AC011897.2->chr2:14756552-14770316:+	IMR32_AUTONOMIC_GANGLIA	0.68	1	5.1315	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	ANTXR1--AC011897.2	1	217	ANTXR1	19545	chr2:69397421:+	AC011897.2	32855	chr2:14768727:+	ONLY_REF_SPLICE	YES	126	0	0.63	1	0.0117	2.5308	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,AC011897.2->chr2:14756552-14770316:+	IMR32_AUTONOMIC_GANGLIA	0.63	1	2.5425	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	ANTXR1--AC011897.2	3	169	ANTXR1	19545	chr2:69397421:+	AC011897.2	33937	chr2:14770111:+	ONLY_REF_SPLICE	YES	126	22	0.58	0.89	0.035	1.971	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,AC011897.2->chr2:14756552-14770316:+	IMR32_AUTONOMIC_GANGLIA	0.58	0.89	2.006	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	NFIA--AC097374.2	21	10	NFIA	1208	chr1:61331138:+	AC097374.2	32271	chr2:95601119:-	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.2449	0.1166	NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A,AC097374.2->chr2:95533231-95613086:-	IMR32_AUTONOMIC_GANGLIA	0.94	1	0.3615	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	WWP2--STARD9	7	3	WWP2	5832	chr16:69820983:+	STARD9	42593	chr15:42927054:+	ONLY_REF_SPLICE	YES	6	8	0.62	0.56	0.0816	0.035	WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+,STARD9->StAR_related_lipid_transfer_domain_containing_9,chr15:42867857-43013179:+	IMR32_AUTONOMIC_GANGLIA	0.56	0.62	0.1166	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	NFIA--AC097374.2	3	9	NFIA	1208	chr1:61331138:+	AC097374.2	33330	chr2:95598736:-	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.035	0.105	NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A,AC097374.2->chr2:95533231-95613086:-	IMR32_AUTONOMIC_GANGLIA	0.86	1	0.14	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	FAF1--STAT5A	3	2	FAF1	18301	chr1:51005264:-	STAT5A	30722	chr17:40440074:+	ONLY_REF_SPLICE	YES	58	16	0.08	0.24	0.035	0.0233	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	IMR32_AUTONOMIC_GANGLIA	0.08	0.24	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	NFIA--AC103563.2	3	1	NFIA	1208	chr1:61331138:+	AC103563.2	31264	chr2:95619207:-	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.035	0.0117	NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A,AC103563.2->chr2:95618906-95619338:-	IMR32_AUTONOMIC_GANGLIA	0.67	1	0.0467	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	TMTC2--GRIP1	3	0	TMTC2	1790	chr12:83081448:+	GRIP1	55092	chr12:66747343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0	TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	IMR32_AUTONOMIC_GANGLIA	1	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	TSSC2--GPI	2	0	TSSC2	2907	chr11:3405514:+	GPI	29503	chr19:34884153:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	TSSC2->chr11:3402191-3430208:+,tumor_suppressing_subtransferable_candidate_2_pseudogene,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	IMR32_AUTONOMIC_GANGLIA	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	C7orf50--MAD1L1	1	1	C7orf50	3078	chr7:1166893:-	MAD1L1	55558	chr7:1855864:-	ONLY_REF_SPLICE	YES	119	30	0.02	0.06	0.0117	0.0117	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	IMR32_AUTONOMIC_GANGLIA	0.02	0.06	0.0234	TRUE	0	4	0	5	2	TRUE	ACH-000310
HEC1A_ENDOMETRIUM	TICAM1--PLIN3	87	44	TICAM1	1091	chr19:4831626:-	PLIN3	7727	chr19:4867730:-	INCL_NON_REF_SPLICE	YES	21	0	0.86	1	0.9257	0.4682	LOCAL_REARRANGEMENT:-:[6637],TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1,PLIN3->chr19:4838353-4867780:-,perilipin_3	HEC1A_ENDOMETRIUM	0.86	1	1.3939	TRUE	0	0	0	2	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	TICAM1--PLIN3	42	20	TICAM1	1091	chr19:4831626:-	PLIN3	9813	chr19:4861423:-	ONLY_REF_SPLICE	YES	21	22	0.75	0.74	0.4469	0.2128	LOCAL_REARRANGEMENT:-:[6637],TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1,PLIN3->chr19:4838353-4867780:-,perilipin_3	HEC1A_ENDOMETRIUM	0.74	0.75	0.6597	TRUE	0	0	0	2	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	MAP3K1--NDUFAF2	41	15	MAP3K1	18803	chr5:56184184:+	NDUFAF2	27891	chr5:60368952:+	ONLY_REF_SPLICE	YES	25	139	0.69	0.29	0.4363	0.1596	{Klijn_CCL:Uterus=1},MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	HEC1A_ENDOMETRIUM	0.29	0.69	0.5959	TRUE	0	0	0	2	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	RP11-608O21.1--SLIT2	6	1	RP11-608O21.1	2288	chr4:19535241:+	SLIT2	13922	chr4:20469375:+	ONLY_REF_SPLICE	YES	2	1	0.78	0.88	0.0638	0.0106	RP11-608O21.1->chr4:19457059-19911315:+,SLIT2->ArcherDX_panel,FoundationOne_panel,chr4:20254883-20622184:+,slit_guidance_ligand_2	HEC1A_ENDOMETRIUM	0.78	0.88	0.0744	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	MAP3K1--NDUFAF2	2	6	MAP3K1	18803	chr5:56184184:+	NDUFAF2	30068	chr5:60394819:+	ONLY_REF_SPLICE	YES	25	97	0.24	0.08	0.0213	0.0638	{Klijn_CCL:Uterus=1},MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	HEC1A_ENDOMETRIUM	0.08	0.24	0.0851	TRUE	0	0	0	2	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	FBXL5--RP11-484O2.1	3	1	FBXL5	16339	chr4:15613889:-	RP11-484O2.1	22958	chr4:15364147:-	ONLY_REF_SPLICE	YES	68	0	0.06	1	0.0319	0.0106	FBXL5->F-box_and_leucine-rich_repeat_protein_5,chr4:15606162-15683302:-,RP11-484O2.1->chr4:15359765-15421656:-	HEC1A_ENDOMETRIUM	0.06	1	0.0425	TRUE	1	6	0	5	2	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	MACF1--CSGALNACT1	3	0	MACF1	107551	chr1:39924107:+	CSGALNACT1	147751	chr8:19263300:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-	HEC1A_ENDOMETRIUM	1	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	MAP3K1--NDUFAF2	1	6	MAP3K1	18803	chr5:56184184:+	NDUFAF2	31109	chr5:60448531:+	ONLY_REF_SPLICE	YES	25	103	0.22	0.06	0.0106	0.0638	{Klijn_CCL:Uterus=1},MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	HEC1A_ENDOMETRIUM	0.06	0.22	0.0744	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	BSG--GRAMD4	2	0	BSG	2405	chr19:572701:+	GRAMD4	16859	chr22:47022648:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	HEC1A_ENDOMETRIUM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	DHRS13--NPM1	2	0	DHRS13	3082	chr17:27228008:-	NPM1	14645	chr5:170827157:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	DHRS13->chr17:27224799-27230089:-,dehydrogenase/reductase_(SDR_family)_member_13,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HEC1A_ENDOMETRIUM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	EIF3G--TMUB2	2	0	EIF3G	2253	chr19:10229344:-	TMUB2	12436	chr17:42267869:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	EIF3G->chr19:10225693-10230596:-,eukaryotic_translation_initiation_factor_3_subunit_G,TMUB2->chr17:42264338-42269099:+,transmembrane_and_ubiquitin_like_domain_containing_2	HEC1A_ENDOMETRIUM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	TRMT61B--TTC27	2	0	TRMT61B	1723	chr2:29092445:-	TTC27	35077	chr2:33042524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	TRMT61B->chr2:29072687-29093167:-,tRNA_methyltransferase_61B,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	HEC1A_ENDOMETRIUM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	TXNRD1--TACC3	2	0	TXNRD1	10019	chr12:104680887:+	TACC3	48053	chr4:1746245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	HEC1A_ENDOMETRIUM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000954
NCIH2023_LUNG	GRB14--IFIH1	65	15	GRB14	9806	chr2:165378490:-	IFIH1	21083	chr2:163167443:-	ONLY_REF_SPLICE	YES	11	18	0.88	0.82	0.6778	0.1564	{Klijn_CCL:Lung=1},GRB14->chr2:165349322-165478358:-,growth_factor_receptor_bound_protein_14,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	NCIH2023_LUNG	0.82	0.88	0.8342	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	GRB14--CSRNP3	62	21	GRB14	9806	chr2:165378490:-	CSRNP3	22587	chr2:166423287:+	ONLY_REF_SPLICE	YES	11	1	0.88	0.99	0.6465	0.219	GRB14->chr2:165349322-165478358:-,growth_factor_receptor_bound_protein_14,CSRNP3->chr2:166326157-166545917:+,cysteine_and_serine_rich_nuclear_protein_3	NCIH2023_LUNG	0.88	0.99	0.8655	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	PLEKHG2--MED29	29	26	PLEKHG2	5416	chr19:39907640:+	MED29	22567	chr19:39888097:+	ONLY_REF_SPLICE	YES	32	69	0.63	0.44	0.3024	0.2711	LOCAL_REARRANGEMENT:+:[11948],PLEKHG2->Oncogene{Bushman},chr19:39903225-39919054:+,pleckstrin_homology_and_RhoGEF_domain_containing_G2,MED29->chr19:39881943-39891277:+,mediator_complex_subunit_29	NCIH2023_LUNG	0.44	0.63	0.5735	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	ELOVL5--PKHD1	27	11	ELOVL5	1333	chr6:53213615:-	PKHD1	47010	chr6:51900519:-	ONLY_REF_SPLICE	YES	249	5	0.13	0.88	0.2816	0.1147	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	NCIH2023_LUNG	0.13	0.88	0.3963	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	DPM2--FAM102A	26	9	DPM2	2932	chr9:130698832:-	FAM102A	10999	chr9:130716204:-	ONLY_REF_SPLICE	YES	219	62	0.14	0.36	0.2711	0.0939	NUCLCLUST,LOCAL_REARRANGEMENT:-:[2095],DPM2->chr9:130697378-130700763:-,dolichyl-phosphate_mannosyltransferase_polypeptide_2,_regulatory_subunit,FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A	NCIH2023_LUNG	0.14	0.36	0.365	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	ATOX1--ARSI	15	1	ATOX1	2364	chr5:151138107:-	ARSI	16416	chr5:149678175:-	ONLY_REF_SPLICE	YES	1	3	0.94	0.84	0.1564	0.0104	ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-,ARSI->arylsulfatase_family_member_I,chr5:149675906-149718870:-	NCIH2023_LUNG	0.84	0.94	0.1668	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	ATOX1--CAMK2A	13	0	ATOX1	2364	chr5:151138107:-	CAMK2A	15145	chr5:149652722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1356	0	ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-,CAMK2A->calcium/calmodulin_dependent_protein_kinase_II_alpha,chr5:149599054-149669854:-	NCIH2023_LUNG	1	1	0.1356	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	EMP2--TEKT5	12	1	EMP2	7419	chr16:10637427:-	TEKT5	24177	chr16:10729775:-	ONLY_REF_SPLICE	YES	202	0	0.06	1	0.1251	0.0104	LOCAL_REARRANGEMENT:-:[46803],EMP2->chr16:10622279-10674555:-,epithelial_membrane_protein_2,TEKT5->chr16:10721358-10788802:-,tektin_5	NCIH2023_LUNG	0.06	1	0.1355	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	DPM2--FAM102A	11	1	DPM2	2051	chr9:130699713:-	FAM102A	10999	chr9:130716204:-	ONLY_REF_SPLICE	YES	73	62	0.14	0.16	0.1147	0.0104	NUCLCLUST,LOCAL_REARRANGEMENT:-:[2095],DPM2->chr9:130697378-130700763:-,dolichyl-phosphate_mannosyltransferase_polypeptide_2,_regulatory_subunit,FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A	NCIH2023_LUNG	0.14	0.16	0.1251	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	PBK--MTUS1	8	5	PBK	1444	chr8:27695169:-	MTUS1	39409	chr8:17513574:-	ONLY_REF_SPLICE	YES	263	28	0.05	0.32	0.0834	0.0521	PBK->PDZ_binding_kinase,chr8:27667137-27695612:-,MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1	NCIH2023_LUNG	0.05	0.32	0.1355	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	CTD-3116E22.6--ZNF274	8	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	NCIH2023_LUNG	1	1	0.0834	TRUE	0	0	0	13	0	TRUE	ACH-000781
NCIH2023_LUNG	NRG1--SCARA5	7	2	NRG1	2344	chr8:31498245:+	SCARA5	37908	chr8:27737283:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.073	0.0209	NRG1->chr8:31496902-32622548:+,neuregulin_1,SCARA5->chr8:27727399-27850244:-,scavenger_receptor_class_A_member_5	NCIH2023_LUNG	1	1	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	CASC9--RP11-300E4.2	7	1	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	56	0	0.12	1	0.073	0.0104	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH2023_LUNG	0.12	1	0.0834	TRUE	0	23	0	19	23	TRUE	ACH-000781
NCIH2023_LUNG	KIF13B--MTMR7	7	1	KIF13B	3339	chr8:29102863:-	MTMR7	53286	chr8:17230749:-	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.073	0.0104	KIF13B->chr8:28924796-29120641:-,kinesin_family_member_13B,MTMR7->chr8:17155539-17271037:-,myotubularin_related_protein_7	NCIH2023_LUNG	0.53	1	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	FTL--ENO1	6	0	FTL	1104	chr19:49468661:+	ENO1	6216	chr1:8938671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0626	0	GTEx&tcga_normals:2/3694=0.05%,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	NCIH2023_LUNG	1	1	0.0626	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	ATOX1--ARSI	4	5	ATOX1	5168	chr5:151131265:-	ARSI	16416	chr5:149678175:-	ONLY_REF_SPLICE	YES	146	3	0.06	0.75	0.0417	0.0521	ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-,ARSI->arylsulfatase_family_member_I,chr5:149675906-149718870:-	NCIH2023_LUNG	0.06	0.75	0.0938	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	FTL--ENO1	5	0	FTL	1095	chr19:49468652:+	ENO1	6208	chr1:8938679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	GTEx&tcga_normals:2/3694=0.05%,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	NCIH2023_LUNG	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	UBE2H--ZC3HC1	5	0	UBE2H	2497	chr7:129591118:-	ZC3HC1	21402	chr7:129688984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0521	0	LOCAL_REARRANGEMENT:-:[65337],UBE2H->chr7:129470572-129592789:-,ubiquitin_conjugating_enzyme_E2_H,ZC3HC1->chr7:129658126-129691291:-,zinc_finger_C3HC-type_containing_1	NCIH2023_LUNG	1	1	0.0521	TRUE	0	0	0	2	0	TRUE	ACH-000781
NCIH2023_LUNG	ELOVL5--PKHD1	2	11	ELOVL5	1800	chr6:53213148:-	PKHD1	47010	chr6:51900519:-	ONLY_REF_SPLICE	YES	301	5	0.04	0.72	0.0209	0.1147	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	NCIH2023_LUNG	0.04	0.72	0.1356	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	AGFG1--COL4A3	4	2	AGFG1	2531	chr2:228356356:+	COL4A3	57883	chr2:228153866:+	ONLY_REF_SPLICE	YES	99	10	0.06	0.38	0.0417	0.0209	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,COL4A3->Oncogene{Bushman},chr2:228029281-228179508:+,collagen_type_IV_alpha_3	NCIH2023_LUNG	0.06	0.38	0.0626	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	PLEKHG2--MED29	1	13	PLEKHG2	5416	chr19:39907640:+	MED29	22637	chr19:39888167:+	ONLY_REF_SPLICE	NO	32	70	0.3	0.17	0.0104	0.1356	LOCAL_REARRANGEMENT:+:[11948],PLEKHG2->Oncogene{Bushman},chr19:39903225-39919054:+,pleckstrin_homology_and_RhoGEF_domain_containing_G2,MED29->chr19:39881943-39891277:+,mediator_complex_subunit_29	NCIH2023_LUNG	0.17	0.3	0.146	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	PRELID2--LARS	4	1	PRELID2	1193	chr5:145214740:-	LARS	26526	chr5:145547828:-	ONLY_REF_SPLICE	YES	12	100	0.29	0.05	0.0417	0.0104	{Klijn_CCL:Lung=1},PRELID2->PRELI_domain_containing_2,chr5:144851362-145214932:-,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	NCIH2023_LUNG	0.05	0.29	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	ATOX1--CAMK2A	4	0	ATOX1	5168	chr5:151131265:-	CAMK2A	13985	chr5:149669286:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-,CAMK2A->calcium/calmodulin_dependent_protein_kinase_II_alpha,chr5:149599054-149669854:-	NCIH2023_LUNG	1	1	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	ATP5B--HSP90AB1	4	0	ATP5B	1844	chr12:57038955:-	HSP90AB1	15488	chr6:44219736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1	NCIH2023_LUNG	1	1	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	RP11-268G12.1--NR0B1	4	0	RP11-268G12.1	1247	chrX:27416868:-	NR0B1	17355	chrX:30322940:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	RP11-268G12.1->chrX:27193037-27417114:-,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	NCIH2023_LUNG	1	1	0.0417	TRUE	0	1	0	3	1	TRUE	ACH-000781
NCIH2023_LUNG	CASC9--RP11-300E4.2	3	0	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH2023_LUNG	1	1	0.0313	TRUE	0	12	0	10	12	TRUE	ACH-000781
NCIH2023_LUNG	CTD-2336H13.2--MON1B	2	1	CTD-2336H13.2	1138	chr16:76770376:+	MON1B	7108	chr16:77225373:+	ONLY_REF_SPLICE	YES	0	20	1	0.13	0.0209	0.0104	CTD-2336H13.2->chr16:76770239-76962066:+,MON1B->MON1_homolog_B,_secretory_trafficking_associated,chr16:77224732-77236302:+	NCIH2023_LUNG	0.13	1	0.0313	TRUE	0	5	0	2	5	TRUE	ACH-000781
NCIH2023_LUNG	ANO7--HDLBP	2	0	ANO7	20467	chr2:242157796:+	HDLBP	44590	chr2:242189395:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_FI:{Brain=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[1887],ANO7->anoctamin_7,chr2:242127924-242164792:+,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	NCIH2023_LUNG	1	1	0.0209	TRUE	0	0	0	2	0	TRUE	ACH-000781
NCIH2023_LUNG	ATOX1--CAMK2A	2	0	ATOX1	2364	chr5:151138107:-	CAMK2A	13985	chr5:149669286:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-,CAMK2A->calcium/calmodulin_dependent_protein_kinase_II_alpha,chr5:149599054-149669854:-	NCIH2023_LUNG	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	CYP24A1--ASPH	2	0	CYP24A1	10936	chr20:52773708:-	ASPH	58327	chr8:62416068:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	NCIH2023_LUNG	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	RHOA--DAG1	2	0	RHOA	2179	chr3:49449253:-	DAG1	21789	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[55715],RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,DAG1->chr3:49506146-49573048:+,dystroglycan_1	NCIH2023_LUNG	1	1	0.0209	TRUE	0	0	0	8	0	TRUE	ACH-000781
NCIH2023_LUNG	TCTN3--MON2	2	0	TCTN3	2224	chr10:97452677:-	MON2	16968	chr12:62877950:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	TCTN3->chr10:97423158-97453900:-,tectonic_family_member_3,MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+	NCIH2023_LUNG	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	DENND4A--MEGF11	1	1	DENND4A	15384	chr15:66007816:-	MEGF11	45868	chr15:66274826:-	ONLY_REF_SPLICE	NO	20	0	0.09	1	0.0104	0.0104	DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,MEGF11->chr15:66187417-66546085:-,multiple_EGF_like_domains_11	NCIH2023_LUNG	0.09	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000781
CAL12T_LUNG	CAMSAP1--PI4KA	36	8	CAMSAP1	3654	chr9:138773479:-	PI4KA	50980	chr22:21107468:-	ONLY_REF_SPLICE	YES	21	99	0.68	0.31	0.3996	0.0888	CAMSAP1->calmodulin_regulated_spectrin_associated_protein_1,chr9:138700333-138799074:-,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	CAL12T_LUNG	0.31	0.68	0.4884	TRUE	0	0	0	1	0	TRUE	ACH-000826
CAL12T_LUNG	USP12--SRCAP	13	7	USP12	3600	chr13:27679868:-	SRCAP	27264	chr16:30727387:+	ONLY_REF_SPLICE	YES	43	22	0.32	0.48	0.1443	0.0777	{Klijn_CCL:Lung=1},USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+	CAL12T_LUNG	0.32	0.48	0.222	TRUE	0	0	0	1	0	TRUE	ACH-000826
CAL12T_LUNG	SLK--DAB2	7	1	SLK	1695	chr10:105727653:+	DAB2	34085	chr5:39394523:-	ONLY_REF_SPLICE	YES	46	1	0.15	0.89	0.0777	0.0111	SLK->STE20_like_kinase,chr10:105726959-105788991:+,DAB2->DAB2,_clathrin_adaptor_protein,Oncogene{Bushman},chr5:39371780-39462402:-	CAL12T_LUNG	0.15	0.89	0.0888	TRUE	0	0	0	1	0	TRUE	ACH-000826
CAL12T_LUNG	TUBB4B--FTH1	6	0	TUBB4B	1128	chr9:140135792:+	FTH1	6697	chr11:61734931:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	CAL12T_LUNG	1	1	0.0666	TRUE	0	0	0	6	0	TRUE	ACH-000826
CAL12T_LUNG	CAMSAP1--PI4KA	4	0	CAMSAP1	1229	chr9:138798846:-	PI4KA	50980	chr22:21107468:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0444	0	CAMSAP1->calmodulin_regulated_spectrin_associated_protein_1,chr9:138700333-138799074:-,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	CAL12T_LUNG	1	1	0.0444	TRUE	0	0	0	1	0	TRUE	ACH-000826
CAL12T_LUNG	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	CAL12T_LUNG	1	1	0.0222	TRUE	0	0	0	10	0	TRUE	ACH-000826
CAL12T_LUNG	LRBA--FAT1	2	0	LRBA	16251	chr4:151817546:-	FAT1	81221	chr4:187560937:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-	CAL12T_LUNG	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000826
CL11_LARGE_INTESTINE	SLC16A3--NF1	156	33	SLC16A3	1710	chr17:80186982:+	NF1	20232	chr17:29486028:+	ONLY_REF_SPLICE	YES	105	51	0.64	0.79	1.5405	0.3259	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	CL11_LARGE_INTESTINE	0.64	0.79	1.8664	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	GATA6--DSG1	149	36	GATA6	7167	chr18:19763004:+	DSG1	27245	chr18:28934260:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.4714	0.3555	{Klijn_CCL:Colo-Rectal=1},GATA6->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_6,Oncogene{Bushman},chr18:19749404-19782491:+,DSG1->chr18:28898052-28936992:+,desmoglein_1	CL11_LARGE_INTESTINE	0.99	1	1.8269	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	NF1--PLXDC1	77	39	NF1	5912	chr17:29490394:+	PLXDC1	106808	chr17:37220166:-	INCL_NON_REF_SPLICE	YES	51	7	0.69	0.94	0.7604	0.3851	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1	CL11_LARGE_INTESTINE	0.69	0.94	1.1455	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	AC006273.5--PALM	75	27	AC006273.5	1576	chr19:783330:+	PALM	18031	chr19:746285:+	ONLY_REF_SPLICE	YES	34	0	0.75	1	0.7406	0.2666	LOCAL_REARRANGEMENT:+:[34426],AC006273.5->chr19:782755-785080:+,PALM->chr19:708953-748329:+,paralemmin	CL11_LARGE_INTESTINE	0.75	1	1.0072	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	SPTLC2--ALKBH1	45	14	SPTLC2	2521	chr14:78063529:-	ALKBH1	30238	chr14:78146313:-	ONLY_REF_SPLICE	YES	109	9	0.35	0.87	0.4444	0.1383	LOCAL_REARRANGEMENT:-:[55631],SPTLC2->chr14:77972340-78083116:-,serine_palmitoyltransferase_long_chain_base_subunit_2,ALKBH1->alkB_homolog_1,_histone_H2A_dioxygenase,chr14:78138747-78174363:-	CL11_LARGE_INTESTINE	0.35	0.87	0.5827	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	SLC16A3--NF1	18	0	SLC16A3	1133	chr17:80186405:+	NF1	20232	chr17:29486028:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1778	0	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	CL11_LARGE_INTESTINE	1	1	0.1778	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	AC006273.5--PALM	8	33	AC006273.5	2743	chr19:784953:+	PALM	18031	chr19:746285:+	INCL_NON_REF_SPLICE	YES	11	0	0.79	1	0.079	0.3259	LOCAL_REARRANGEMENT:+:[34426],AC006273.5->chr19:782755-785080:+,PALM->chr19:708953-748329:+,paralemmin	CL11_LARGE_INTESTINE	0.79	1	0.4049	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	AC006273.5--PALM	7	34	AC006273.5	2830	chr19:785040:+	PALM	18031	chr19:746285:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0.3358	LOCAL_REARRANGEMENT:+:[34426],AC006273.5->chr19:782755-785080:+,PALM->chr19:708953-748329:+,paralemmin	CL11_LARGE_INTESTINE	1	1	0.4049	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	AC006273.5--PALM	6	33	AC006273.5	2760	chr19:784970:+	PALM	18031	chr19:746285:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0593	0.3259	LOCAL_REARRANGEMENT:+:[34426],AC006273.5->chr19:782755-785080:+,PALM->chr19:708953-748329:+,paralemmin	CL11_LARGE_INTESTINE	0.97	1	0.3852	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	STXBP3--SLC25A24P1	9	7	STXBP3	4135	chr1:109299388:+	SLC25A24P1	26709	chr1:108826862:+	ONLY_REF_SPLICE	YES	69	1	0.19	0.94	0.0889	0.0691	STXBP3->chr1:109289296-109352148:+,syntaxin_binding_protein_3,SLC25A24P1->SLC25A24_pseudogene_1,chr1:108815565-108918572:+	CL11_LARGE_INTESTINE	0.19	0.94	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	ST3GAL3--PTPRF	7	1	ST3GAL3	3470	chr1:44202051:+	PTPRF	29329	chr1:44003869:+	ONLY_REF_SPLICE	YES	8	144	0.5	0.05	0.0691	0.0099	LOCAL_REARRANGEMENT:+:[82152],ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F	CL11_LARGE_INTESTINE	0.05	0.5	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	CCAT1--CASC8	4	1	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	7	1	0.42	0.83	0.0395	0.0099	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	CL11_LARGE_INTESTINE	0.42	0.83	0.0494	TRUE	0	26	0	18	24	TRUE	ACH-000249
CL11_LARGE_INTESTINE	MECOM--LRRC31	4	1	MECOM	1283	chr3:169381124:-	LRRC31	35633	chr3:169587660:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0.0099	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,LRRC31->chr3:169556967-169587718:-,leucine_rich_repeat_containing_31	CL11_LARGE_INTESTINE	1	1	0.0494	TRUE	0	4	0	2	4	TRUE	ACH-000249
CL11_LARGE_INTESTINE	ACBD4--CTD-2206N4.4	3	1	ACBD4	3215	chr17:43213320:+	CTD-2206N4.4	15132	chr17:37219675:+	ONLY_REF_SPLICE	YES	37	1	0.1	0.8	0.0296	0.0099	ACBD4->acyl-CoA_binding_domain_containing_4,chr17:43209967-43221548:+,CTD-2206N4.4->chr17:37213272-37269443:+	CL11_LARGE_INTESTINE	0.1	0.8	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	ROCK2--AC099344.2	3	1	ROCK2	2753	chr2:11484122:-	AC099344.2	39593	chr2:11498162:-	ONLY_REF_SPLICE	YES	44	0	0.08	1	0.0296	0.0099	LOCAL_REARRANGEMENT:-:[9185],ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,AC099344.2->chr2:11497641-11505762:-	CL11_LARGE_INTESTINE	0.08	1	0.0395	TRUE	0	0	0	2	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	ST3GAL3--PTPRF	3	1	ST3GAL3	3470	chr1:44202051:+	PTPRF	27014	chr1:43994328:+	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.0296	0.0099	LOCAL_REARRANGEMENT:+:[82152],ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F	CL11_LARGE_INTESTINE	0.33	1	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	ADAP1--C7orf50	3	0	ADAP1	9672	chr7:959605:-	C7orf50	29696	chr7:1049779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	CL11_LARGE_INTESTINE	1	1	0.0296	TRUE	0	6	0	10	1	TRUE	ACH-000249
CL11_LARGE_INTESTINE	ACBD4--CTD-2206N4.4	2	1	ACBD4	3882	chr17:43213987:+	CTD-2206N4.4	15132	chr17:37219675:+	ONLY_REF_SPLICE	YES	19	1	0.14	0.75	0.0198	0.0099	ACBD4->acyl-CoA_binding_domain_containing_4,chr17:43209967-43221548:+,CTD-2206N4.4->chr17:37213272-37269443:+	CL11_LARGE_INTESTINE	0.14	0.75	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	TXNRD1--CHST11	2	0	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	CL11_LARGE_INTESTINE	1	1	0.0198	TRUE	0	2	1	13	2	TRUE	ACH-000249
CL11_LARGE_INTESTINE	ACBD4--CTD-2206N4.4	1	1	ACBD4	3494	chr17:43213599:+	CTD-2206N4.4	15132	chr17:37219675:+	ONLY_REF_SPLICE	YES	24	1	0.08	0.67	0.0099	0.0099	ACBD4->acyl-CoA_binding_domain_containing_4,chr17:43209967-43221548:+,CTD-2206N4.4->chr17:37213272-37269443:+	CL11_LARGE_INTESTINE	0.08	0.67	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	CCAT1--CASC8	1	1	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	7	2	0.22	0.5	0.0099	0.0099	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	CL11_LARGE_INTESTINE	0.22	0.5	0.0198	TRUE	0	7	0	7	7	TRUE	ACH-000249
NCIH510_LUNG	MACF1--HEYL	367	207	MACF1	6636	chr1:39571389:+	HEYL	126928	chr1:40098387:-	ONLY_REF_SPLICE	YES	100	36	0.85	0.94	3.9621	2.2347	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,HEYL->chr1:40089825-40105617:-,hes_related_family_bHLH_transcription_factor_with_YRPW_motif-like	NCIH510_LUNG	0.85	0.94	6.1968	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TWSG1--PIK3C3	265	72	TWSG1	3414	chr18:9360069:+	PIK3C3	47788	chr18:39661087:+	ONLY_REF_SPLICE	YES	110	24	0.75	0.93	2.8609	0.7773	TWSG1->chr18:9334765-9402418:+,twisted_gastrulation_BMP_signaling_modulator_1,PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3	NCIH510_LUNG	0.75	0.93	3.6382	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	SMEK1--HEATR3	220	48	SMEK1	2049	chr14:91975850:-	HEATR3	33620	chr16:50128616:+	ONLY_REF_SPLICE	YES	71	54	0.79	0.83	2.3751	0.5182	{Klijn_CCL:Lung=1},SMEK1->chr14:91923955-91976898:-,HEATR3->HEAT_repeat_containing_3,chr16:50099852-50140298:+	NCIH510_LUNG	0.79	0.83	2.8933	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	KIAA1958--HSDL2	96	26	KIAA1958	1272	chr9:115249398:+	HSDL2	32584	chr9:115221729:+	ONLY_REF_SPLICE	YES	4	81	0.97	0.6	1.0364	0.2807	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[14437],KIAA1958->KIAA1958,chr9:115249127-115431677:+,HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2	NCIH510_LUNG	0.6	0.97	1.3171	TRUE	0	1	0	2	1	TRUE	ACH-000871
NCIH510_LUNG	RAP2A--PCDH9-AS1	83	77	RAP2A	1563	chr13:98087038:+	PCDH9-AS1	12715	chr13:66897306:+	ONLY_REF_SPLICE	YES	96	0	0.62	1	0.8961	0.8313	RAP2A->Oncogene{Bushman},RAP2A,_member_of_RAS_oncogene_family,chr13:98086476-98121382:+,PCDH9-AS1->PCDH9_antisense_RNA_1,chr13:66878003-66897693:+	NCIH510_LUNG	0.62	1	1.7274	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PTK2--PKHD1L1	88	49	PTK2	47959	chr8:141710990:-	PKHD1L1	140485	chr8:110530396:+	ONLY_REF_SPLICE	YES	114	0	0.55	1	0.95	0.529	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,PKHD1L1->chr8:110374706-110542559:+,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)-like_1	NCIH510_LUNG	0.55	1	1.479	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	CAPZB--RP11-774D14.1	79	2	CAPZB	1137	chr1:19811930:-	RP11-774D14.1	27836	chr5:20895592:+	ONLY_REF_SPLICE	YES	25	0	0.76	1	0.8529	0.0216	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,RP11-774D14.1->chr5:20611949-20937800:+	NCIH510_LUNG	0.76	1	0.8745	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PHF15--UBE2B	57	44	PHF15	6248	chr5:133873773:+	UBE2B	29270	chr5:133710074:+	ONLY_REF_SPLICE	YES	32	7	0.76	0.94	0.6154	0.475	PHF15->chr5:133860003-133918918:+,UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B	NCIH510_LUNG	0.76	0.94	1.0904	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-774D14.1--RP5-857K21.4	57	3	RP11-774D14.1	9780	chr5:20895676:+	RP5-857K21.4	23981	chr1:543436:-	ONLY_REF_SPLICE	YES	0	1	1	0.98	0.6154	0.0324	RP11-774D14.1->chr5:20611949-20937800:+,RP5-857K21.4->chr1:536816-659930:-	NCIH510_LUNG	0.98	1	0.6478	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	HDAC2--BEND3	47	35	HDAC2	2607	chr6:114292021:-	BEND3	34907	chr6:107420500:-	ONLY_REF_SPLICE	YES	203	0	0.29	1	0.5074	0.3779	HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2,BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-	NCIH510_LUNG	0.29	1	0.8853	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MACF1--HEYL	1	208	MACF1	8522	chr1:39670803:+	HEYL	126928	chr1:40098387:-	ONLY_REF_SPLICE	YES	129	36	0.62	0.85	0.0108	2.2455	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,HEYL->chr1:40089825-40105617:-,hes_related_family_bHLH_transcription_factor_with_YRPW_motif-like	NCIH510_LUNG	0.62	0.85	2.2563	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MACF1--HEYL	9	176	MACF1	6636	chr1:39571389:+	HEYL	126932	chr1:40098383:-	INCL_NON_REF_SPLICE	YES	100	36	0.65	0.84	0.0972	1.9001	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,HEYL->chr1:40089825-40105617:-,hes_related_family_bHLH_transcription_factor_with_YRPW_motif-like	NCIH510_LUNG	0.65	0.84	1.9973	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TBC1D3F--SMYD3	41	33	TBC1D3F	8291	chr17:36291514:+	SMYD3	42584	chr1:245927451:-	ONLY_REF_SPLICE	YES	34	210	0.69	0.26	0.4426	0.3563	TBC1D3F->TBC1_domain_family_member_3F,chr17:36283971-36294915:+,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	NCIH510_LUNG	0.26	0.69	0.7989	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	NFE2L1--SKAP1	39	18	NFE2L1	8029	chr17:46134864:+	SKAP1	29800	chr17:46214699:-	ONLY_REF_SPLICE	YES	1142	42	0.05	0.58	0.421	0.1943	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[71953],NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,SKAP1->chr17:46210802-46507637:-,src_kinase_associated_phosphoprotein_1	NCIH510_LUNG	0.05	0.58	0.6153	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PKHD1L1--ESRP1	32	19	PKHD1L1	78224	chr8:110535119:+	ESRP1	92517	chr8:95680177:+	ONLY_REF_SPLICE	YES	2	215	0.96	0.19	0.3455	0.2051	PKHD1L1->chr8:110374706-110542559:+,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)-like_1,ESRP1->chr8:95653302-95719694:+,epithelial_splicing_regulatory_protein_1	NCIH510_LUNG	0.19	0.96	0.5506	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	BAZ1A--SFTA3	26	37	BAZ1A	24866	chr14:35240717:-	SFTA3	39563	chr14:36947083:-	ONLY_REF_SPLICE	YES	122	518	0.34	0.11	0.2807	0.3994	{Klijn_CCL:Lung=1},BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,SFTA3->chr14:36942493-36983034:-,surfactant_associated_3	NCIH510_LUNG	0.11	0.34	0.6801	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	R3HDM2--DCTN2	26	10	R3HDM2	2356	chr12:57789532:-	DCTN2	39713	chr12:57929628:-	ONLY_REF_SPLICE	YES	16	566	0.69	0.06	0.2807	0.108	LOCAL_REARRANGEMENT:-:[99097],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,DCTN2->chr12:57923885-57941114:-,dynactin_subunit_2	NCIH510_LUNG	0.06	0.69	0.3887	TRUE	0	2	0	1	1	TRUE	ACH-000871
NCIH510_LUNG	BAZ1A--SFTA3	21	26	BAZ1A	24866	chr14:35240717:-	SFTA3	40338	chr14:36946308:-	ONLY_REF_SPLICE	YES	122	574	0.28	0.08	0.2267	0.2807	{Klijn_CCL:Lung=1},BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,SFTA3->chr14:36942493-36983034:-,surfactant_associated_3	NCIH510_LUNG	0.08	0.28	0.5074	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	XRCC6--ACO2	23	15	XRCC6	9366	chr22:42049694:+	ACO2	18770	chr22:41895730:+	ONLY_REF_SPLICE	YES	902	4	0.04	0.9	0.2483	0.1619	LOCAL_REARRANGEMENT:+:[92130],XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,ACO2->aconitase_2,chr22:41865129-41924993:+	NCIH510_LUNG	0.04	0.9	0.4102	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	FBXL3--TRPC4	21	10	FBXL3	1369	chr13:77600962:-	TRPC4	16483	chr13:38357497:-	ONLY_REF_SPLICE	YES	7	1	0.82	0.97	0.2267	0.108	FBXL3->F-box_and_leucine-rich_repeat_protein_3,chr13:77566740-77601330:-,TRPC4->chr13:38210773-38444562:-,transient_receptor_potential_cation_channel_subfamily_C_member_4	NCIH510_LUNG	0.82	0.97	0.3347	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-774D14.1--RP5-857K21.4	23	1	RP11-774D14.1	9780	chr5:20895676:+	RP5-857K21.4	25083	chr1:536957:-	ONLY_REF_SPLICE	YES	0	4	1	0.86	0.2483	0.0108	RP11-774D14.1->chr5:20611949-20937800:+,RP5-857K21.4->chr1:536816-659930:-	NCIH510_LUNG	0.86	1	0.2591	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	ELOVL6--ENPEP	17	20	ELOVL6	1953	chr4:111119403:-	ENPEP	17436	chr4:111397768:+	INCL_NON_REF_SPLICE	YES	67	0	0.36	1	0.1835	0.2159	{Klijn_CCL:Lung=1},ELOVL6->ELOVL_fatty_acid_elongase_6,chr4:110967002-111120355:-,ENPEP->chr4:111286889-111486441:+,glutamyl_aminopeptidase	NCIH510_LUNG	0.36	1	0.3994	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TRIO--CTD-2296D1.5	21	1	TRIO	1181	chr5:14143991:+	CTD-2296D1.5	76570	chr5:7379726:+	ONLY_REF_SPLICE	YES	4	0	0.85	1	0.2267	0.0108	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,CTD-2296D1.5->chr5:7373230-7379903:+	NCIH510_LUNG	0.85	1	0.2375	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TBC1D3F--SMYD3	11	39	TBC1D3F	9827	chr17:36293050:+	SMYD3	42584	chr1:245927451:-	ONLY_REF_SPLICE	YES	59	210	0.46	0.19	0.1188	0.421	TBC1D3F->TBC1_domain_family_member_3F,chr17:36283971-36294915:+,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	NCIH510_LUNG	0.19	0.46	0.5398	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	ELOVL6--ENPEP	14	13	ELOVL6	1953	chr4:111119403:-	ENPEP	18883	chr4:111409697:+	ONLY_REF_SPLICE	YES	67	8	0.29	0.77	0.1511	0.1403	{Klijn_CCL:Lung=1},ELOVL6->ELOVL_fatty_acid_elongase_6,chr4:110967002-111120355:-,ENPEP->chr4:111286889-111486441:+,glutamyl_aminopeptidase	NCIH510_LUNG	0.29	0.77	0.2914	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PDXDC2P--RP11-296I10.3	16	4	PDXDC2P	1193	chr16:70099659:-	RP11-296I10.3	38298	chr16:70192792:-	ONLY_REF_SPLICE	YES	13	41	0.61	0.33	0.1727	0.0432	LOCAL_INVERSION:-,chr16:-:[90392],PDXDC2P->chr16:70010200-70099851:-,chr16:70044654-70099848:-,pyridoxal-dependent_decarboxylase_domain_containing_2,_pseudogene,RP11-296I10.3->chr16:70190243-70207351:-	NCIH510_LUNG	0.33	0.61	0.2159	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	BAGE2--CTBP2P1	15	6	BAGE2	5645	chr21:11058161:-	CTBP2P1	23085	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	123	0	0.15	1	0.1619	0.0648	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	NCIH510_LUNG	0.15	1	0.2267	TRUE	0	0	0	6	0	TRUE	ACH-000871
NCIH510_LUNG	PPIEL--INPP5B	15	6	PPIEL	6401	chr1:40007392:-	INPP5B	21018	chr1:38357126:-	INCL_NON_REF_SPLICE	YES	0	27	1	0.44	0.1619	0.0648	PPIEL->chr1:39997510-40024379:-,peptidylprolyl_isomerase_E_like_pseudogene,INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B	NCIH510_LUNG	0.44	1	0.2267	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	BAZ1A--SFTA3	8	26	BAZ1A	24866	chr14:35240717:-	SFTA3	40343	chr14:36946303:-	ONLY_REF_SPLICE	YES	122	565	0.22	0.06	0.0864	0.2807	{Klijn_CCL:Lung=1},BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,SFTA3->chr14:36942493-36983034:-,surfactant_associated_3	NCIH510_LUNG	0.06	0.22	0.3671	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PTK2--PKHD1L1	12	7	PTK2	47959	chr8:141710990:-	PKHD1L1	140697	chr8:110530608:+	INCL_NON_REF_SPLICE	YES	114	26	0.14	0.42	0.1295	0.0756	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,PKHD1L1->chr8:110374706-110542559:+,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)-like_1	NCIH510_LUNG	0.14	0.42	0.2051	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TBC1D3F--SMYD3	5	35	TBC1D3F	9304	chr17:36292527:+	SMYD3	42584	chr1:245927451:-	ONLY_REF_SPLICE	YES	52	210	0.43	0.16	0.054	0.3779	TBC1D3F->TBC1_domain_family_member_3F,chr17:36283971-36294915:+,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	NCIH510_LUNG	0.16	0.43	0.4319	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	AP003900.6--AC011718.2	8	19	AP003900.6	1122	chr21:11169841:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	11	0	0.71	1	0.0864	0.2051	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH510_LUNG	0.71	1	0.2915	TRUE	0	0	0	11	0	TRUE	ACH-000871
NCIH510_LUNG	TBC1D3F--SMYD3	4	34	TBC1D3F	8741	chr17:36291964:+	SMYD3	42584	chr1:245927451:-	ONLY_REF_SPLICE	YES	51	210	0.43	0.15	0.0432	0.3671	TBC1D3F->TBC1_domain_family_member_3F,chr17:36283971-36294915:+,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	NCIH510_LUNG	0.15	0.43	0.4103	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PLXND1--TMCC1	11	5	PLXND1	15664	chr3:129288686:-	TMCC1	45922	chr3:129390107:-	ONLY_REF_SPLICE	YES	161	34	0.09	0.32	0.1188	0.054	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	NCIH510_LUNG	0.09	0.32	0.1728	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TWSG1--PIK3C3	2	38	TWSG1	2314	chr18:9337350:+	PIK3C3	47788	chr18:39661087:+	ONLY_REF_SPLICE	YES	159	24	0.2	0.62	0.0216	0.4102	TWSG1->chr18:9334765-9402418:+,twisted_gastrulation_BMP_signaling_modulator_1,PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3	NCIH510_LUNG	0.2	0.62	0.4318	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	VPS8--AGRN	9	6	VPS8	30387	chr3:184603944:+	AGRN	69518	chr1:976045:+	ONLY_REF_SPLICE	YES	41	143	0.27	0.09	0.0972	0.0648	VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+,AGRN->agrin,chr1:955503-991496:+	NCIH510_LUNG	0.09	0.27	0.162	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	NF1--EPHB3	10	1	NF1	7019	chr17:29497015:+	EPHB3	79185	chr3:184289106:+	ONLY_REF_SPLICE	YES	40	2	0.22	0.85	0.108	0.0108	{Klijn_CCL:Lung=1},NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,EPHB3->EPH_receptor_B3,chr3:184279572-184300197:+	NCIH510_LUNG	0.22	0.85	0.1188	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	SMEK1--HEATR3	4	25	SMEK1	2049	chr14:91975850:-	HEATR3	34721	chr16:50134141:+	ONLY_REF_SPLICE	YES	71	74	0.29	0.28	0.0432	0.2699	{Klijn_CCL:Lung=1},SMEK1->chr14:91923955-91976898:-,HEATR3->HEAT_repeat_containing_3,chr16:50099852-50140298:+	NCIH510_LUNG	0.28	0.29	0.3131	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	CYLD--KLF3	8	6	CYLD	6992	chr16:50788335:+	KLF3	40071	chr4:38698703:+	ONLY_REF_SPLICE	YES	46	80	0.23	0.15	0.0864	0.0648	{Klijn_CCL:Lung=1},CYLD->ArcherDX_panel,CYLD_lysine_63_deubiquitinase,FoundationOne_panel,Oncogene{Bushman},chr16:50775961-50835846:+,KLF3->Kruppel-like_factor_3_(basic),Oncogene{Bushman},chr4:38665817-38702663:+	NCIH510_LUNG	0.15	0.23	0.1512	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	AC027612.3--AP000345.1	8	5	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	20	0	0.39	1	0.0864	0.054	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH510_LUNG	0.39	1	0.1404	TRUE	0	0	0	11	0	TRUE	ACH-000871
NCIH510_LUNG	BTD--FGD5	9	0	BTD	1554	chr3:15643401:+	FGD5	18414	chr3:14905635:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0972	0	{Klijn_CCL:Lung=1},BTD->biotinidase,chr3:15642848-15687329:+,FGD5->FYVE,_RhoGEF_and_PH_domain_containing_5,chr3:14860469-14975895:+	NCIH510_LUNG	1	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	UNC45A--DYRK1A	6	12	UNC45A	10955	chr15:91488293:+	DYRK1A	37919	chr21:38868420:+	ONLY_REF_SPLICE	YES	136	83	0.12	0.18	0.0648	0.1295	UNC45A->chr15:91473410-91497323:+,unc-45_myosin_chaperone_A,DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A	NCIH510_LUNG	0.12	0.18	0.1943	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	ELOVL6--ENPEP	3	20	ELOVL6	1953	chr4:111119403:-	ENPEP	17327	chr4:111397659:+	INCL_NON_REF_SPLICE	YES	67	0	0.26	1	0.0324	0.2159	{Klijn_CCL:Lung=1},ELOVL6->ELOVL_fatty_acid_elongase_6,chr4:110967002-111120355:-,ENPEP->chr4:111286889-111486441:+,glutamyl_aminopeptidase	NCIH510_LUNG	0.26	1	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	HDAC2--BEND3	1	25	HDAC2	2607	chr6:114292021:-	BEND3	35450	chr6:107419957:-	ONLY_REF_SPLICE	YES	203	0	0.11	1	0.0108	0.2699	HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2,BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-	NCIH510_LUNG	0.11	1	0.2807	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PDXDC2P--RP11-296I10.3	4	13	PDXDC2P	1193	chr16:70099659:-	RP11-296I10.3	35294	chr16:70195796:-	ONLY_REF_SPLICE	YES	13	1	0.57	0.94	0.0432	0.1403	LOCAL_INVERSION:-,chr16:-:[90392],PDXDC2P->chr16:70010200-70099851:-,chr16:70044654-70099848:-,pyridoxal-dependent_decarboxylase_domain_containing_2,_pseudogene,RP11-296I10.3->chr16:70190243-70207351:-	NCIH510_LUNG	0.57	0.94	0.1835	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PHF15--UBE2B	1	25	PHF15	6248	chr5:133873773:+	UBE2B	30471	chr5:133712360:+	ONLY_REF_SPLICE	YES	32	323	0.45	0.07	0.0108	0.2699	PHF15->chr5:133860003-133918918:+,UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B	NCIH510_LUNG	0.07	0.45	0.2807	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TCEA2--ITGAE	7	1	TCEA2	7488	chr20:62697891:+	ITGAE	28235	chr17:3655168:-	ONLY_REF_SPLICE	YES	37	0	0.18	1	0.0756	0.0108	TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2,ITGAE->chr17:3617922-3704537:-,integrin_subunit_alpha_E	NCIH510_LUNG	0.18	1	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	CTD-2314B22.3--RP11-536C10.19	7	0	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0756	0	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	NCIH510_LUNG	1	1	0.0756	TRUE	0	2	0	9	2	TRUE	ACH-000871
NCIH510_LUNG	CAPZB--RP11-774D14.1	6	3	CAPZB	2383	chr1:19810684:-	RP11-774D14.1	27836	chr5:20895592:+	ONLY_REF_SPLICE	YES	81	0	0.1	1	0.0648	0.0324	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,RP11-774D14.1->chr5:20611949-20937800:+	NCIH510_LUNG	0.1	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PDXDC2P--RP11-296I10.3	5	7	PDXDC2P	1193	chr16:70099659:-	RP11-296I10.3	36246	chr16:70194844:-	ONLY_REF_SPLICE	YES	13	14	0.48	0.46	0.054	0.0756	LOCAL_INVERSION:-,chr16:-:[90392],PDXDC2P->chr16:70010200-70099851:-,chr16:70044654-70099848:-,pyridoxal-dependent_decarboxylase_domain_containing_2,_pseudogene,RP11-296I10.3->chr16:70190243-70207351:-	NCIH510_LUNG	0.46	0.48	0.1296	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	HECTD4--RP11-113C12.4	4	7	HECTD4	9161	chr12:112720914:-	RP11-113C12.4	83137	chr12:8521578:+	ONLY_REF_SPLICE	YES	34	0	0.24	1	0.0432	0.0756	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,RP11-113C12.4->chr12:8472977-8522151:+	NCIH510_LUNG	0.24	1	0.1188	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	BAGE2--CTBP2P1	4	6	BAGE2	5645	chr21:11058161:-	CTBP2P1	23091	chrY:59001446:+	INCL_NON_REF_SPLICE	YES	123	0	0.08	1	0.0432	0.0648	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	NCIH510_LUNG	0.08	1	0.108	TRUE	0	0	0	6	0	TRUE	ACH-000871
NCIH510_LUNG	HECTD4--RP11-266K4.9	5	1	HECTD4	9161	chr12:112720914:-	RP11-266K4.9	85848	chr12:8394958:+	ONLY_REF_SPLICE	YES	34	0	0.15	1	0.054	0.0108	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,RP11-266K4.9->chr12:8388011-8395160:+	NCIH510_LUNG	0.15	1	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	KCNQ3--RP11-382A18.2	4	3	KCNQ3	5087	chr8:133196488:-	RP11-382A18.2	31616	chr8:128404749:+	ONLY_REF_SPLICE	YES	25	0	0.22	1	0.0432	0.0324	KCNQ3->chr8:133133108-133493200:-,potassium_voltage-gated_channel_subfamily_Q_member_3,RP11-382A18.2->chr8:128351519-128404876:+	NCIH510_LUNG	0.22	1	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP5-864K19.4--GRIK3	4	2	RP5-864K19.4	1240	chr1:39325911:+	GRIK3	20757	chr1:37291427:-	ONLY_REF_SPLICE	YES	7	153	0.46	0.04	0.0432	0.0216	RP5-864K19.4->chr1:39325672-39385068:+,GRIK3->chr1:37261128-37499730:-,glutamate_ionotropic_receptor_kainate_type_subunit_3	NCIH510_LUNG	0.04	0.46	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	LPHN3--UNC5C	4	1	LPHN3	36778	chr4:62936707:+	UNC5C	67338	chr4:96090550:-	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0432	0.0108	LPHN3->chr4:62066976-62944053:+,UNC5C->chr4:96083655-96470357:-,unc-5_netrin_receptor_C	NCIH510_LUNG	0.62	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	KCNN3--TAF12	4	0	KCNN3	9249	chr1:154698392:-	TAF12	28782	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	KCNN3->chr1:154669931-154842756:-,potassium_calcium-activated_channel_subfamily_N_member_3,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	NCIH510_LUNG	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TMC5--TMC7	3	4	TMC5	27974	chr16:19508485:+	TMC7	39217	chr16:19041546:+	ONLY_REF_SPLICE	YES	15	3	0.32	0.7	0.0324	0.0432	PROTCLUST,TMC5->chr16:19421818-19510435:+,transmembrane_channel_like_5,TMC7->chr16:18995256-19075264:+,transmembrane_channel_like_7	NCIH510_LUNG	0.32	0.7	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-89K10.1--RP11-103H7.3	3	2	RP11-89K10.1	2156	chr8:127601535:+	RP11-103H7.3	14591	chr8:127533145:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0324	0.0216	LOCAL_REARRANGEMENT:+:[35524],RP11-89K10.1->chr8:127570120-127725660:+,RP11-103H7.3->chr8:127530943-127534596:+	NCIH510_LUNG	0.83	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	AC027612.3--AP000345.1	2	5	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0216	0.054	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH510_LUNG	0.78	1	0.0756	TRUE	0	0	0	11	0	TRUE	ACH-000871
NCIH510_LUNG	ANKLE2--LONP2	3	0	ANKLE2	6732	chr12:133332743:-	LONP2	50303	chr16:48388351:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-,LONP2->chr16:48278207-48397033:+,lon_peptidase_2,_peroxisomal	NCIH510_LUNG	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	CGNL1--TCF12	3	0	CGNL1	1601	chr15:57668765:+	TCF12	48460	chr15:57458600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:+:[76686],CGNL1->chr15:57668165-57842925:+,cingulin-like_1,TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12	NCIH510_LUNG	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	CTD-2021H9.3--PTPRR	3	0	CTD-2021H9.3	2287	chr12:71509630:-	PTPRR	8077	chr12:71286757:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	CTD-2021H9.3->chr12:71441182-71512027:-,PTPRR->chr12:71031853-71314623:-,protein_tyrosine_phosphatase,_receptor_type_R	NCIH510_LUNG	1	1	0.0324	TRUE	0	4	0	1	4	TRUE	ACH-000871
NCIH510_LUNG	EHMT1--EGFL7	3	0	EHMT1	1058	chr9:140513501:+	EGFL7	54659	chr9:139559144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,EGFL7->EGF_like_domain_multiple_7,chr9:139553308-139567130:+	NCIH510_LUNG	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP1-118J21.5--BMP8B	2	4	RP1-118J21.5	1322	chr1:40363738:+	BMP8B	8987	chr1:40230489:-	ONLY_REF_SPLICE	YES	16	163	0.27	0.04	0.0216	0.0432	RP1-118J21.5->chr1:40363417-40364770:+,BMP8B->bone_morphogenetic_protein_8b,chr1:40222854-40254533:-	NCIH510_LUNG	0.04	0.27	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	EBAG9--CASC8	2	3	EBAG9	1751	chr8:110552690:+	CASC8	22351	chr8:128335399:-	ONLY_REF_SPLICE	YES	22	0	0.19	1	0.0216	0.0324	EBAG9->Oncogene{Bushman},chr8:110551940-110578225:+,estrogen_receptor_binding_site_associated,_antigen,_9,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH510_LUNG	0.19	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	FHOD3--RP11-172F10.1	2	2	FHOD3	1287	chr18:33877963:+	RP11-172F10.1	40912	chr18:5004002:-	ONLY_REF_SPLICE	YES	26	0	0.13	1	0.0216	0.0216	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,RP11-172F10.1->chr18:4775053-5004536:-	NCIH510_LUNG	0.13	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MACF1--NT5C1A	2	2	MACF1	6636	chr1:39571389:+	NT5C1A	130402	chr1:40125158:-	ONLY_REF_SPLICE	YES	100	0	0.04	1	0.0216	0.0216	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,NT5C1A->5'-nucleotidase,_cytosolic_IA,chr1:40124793-40137710:-	NCIH510_LUNG	0.04	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PDXDC2P--RP11-296I10.3	1	6	PDXDC2P	1193	chr16:70099659:-	RP11-296I10.3	36876	chr16:70194214:-	ONLY_REF_SPLICE	YES	13	16	0.35	0.3	0.0108	0.0648	LOCAL_INVERSION:-,chr16:-:[90392],PDXDC2P->chr16:70010200-70099851:-,chr16:70044654-70099848:-,pyridoxal-dependent_decarboxylase_domain_containing_2,_pseudogene,RP11-296I10.3->chr16:70190243-70207351:-	NCIH510_LUNG	0.3	0.35	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	CNGB3--RP11-99H20.1	2	1	CNGB3	12313	chr8:87655979:-	RP11-99H20.1	30246	chr8:83020948:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0.0108	CNGB3->chr8:87566205-87755903:-,cyclic_nucleotide_gated_channel_beta_3,RP11-99H20.1->chr8:83010686-83072812:-	NCIH510_LUNG	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MMP26--OR51E1	2	1	MMP26	2191	chr11:4788571:+	OR51E1	11830	chr11:4673718:+	ONLY_REF_SPLICE	YES	0	9	1	0.25	0.0216	0.0108	LOCAL_REARRANGEMENT:+:[49439],MMP26->chr11:4726157-5013659:+,matrix_metallopeptidase_26,OR51E1->chr11:4664650-4676718:+,olfactory_receptor_family_51_subfamily_E_member_1	NCIH510_LUNG	0.25	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0.0108	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH510_LUNG	1	1	0.0324	TRUE	0	6	0	6	6	TRUE	ACH-000871
NCIH510_LUNG	TCEA2--ITGAE	2	1	TCEA2	7970	chr20:62698373:+	ITGAE	28235	chr17:3655168:-	ONLY_REF_SPLICE	YES	29	0	0.09	1	0.0216	0.0108	TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2,ITGAE->chr17:3617922-3704537:-,integrin_subunit_alpha_E	NCIH510_LUNG	0.09	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TMC5--TMC7	2	1	TMC5	27974	chr16:19508485:+	TMC7	42813	chr16:19049196:+	ONLY_REF_SPLICE	YES	15	8	0.17	0.27	0.0216	0.0108	PROTCLUST,TMC5->chr16:19421818-19510435:+,transmembrane_channel_like_5,TMC7->chr16:18995256-19075264:+,transmembrane_channel_like_7	NCIH510_LUNG	0.17	0.27	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	VWDE--PHF14	2	1	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	14	54	0.18	0.05	0.0216	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH510_LUNG	0.05	0.18	0.0324	TRUE	0	6	0	17	2	TRUE	ACH-000871
NCIH510_LUNG	ANKRD12--PTPN2	2	0	ANKRD12	1869	chr18:9137094:+	PTPN2	44038	chr18:12817364:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+,PTPN2->chr18:12785477-12929642:-,protein_tyrosine_phosphatase,_non-receptor_type_2	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	CTD-2368P22.1--ZFP28	2	0	CTD-2368P22.1	1986	chr19:58514414:+	ZFP28	22320	chr19:57065053:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	CTD-2368P22.1->chr19:58513429-58522600:+,ZFP28->ZFP28_zinc_finger_protein,chr19:57050317-57068169:+	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	HAT1--IMPA1	2	0	HAT1	5270	chr2:172803303:+	IMPA1	25212	chr8:82586184:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1,IMPA1->chr8:82570196-82598928:-,inositol_monophosphatase_1	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	HSP90AA1--DYNC1H1	2	0	HSP90AA1	7819	chr14:102549371:-	DYNC1H1	29012	chr14:102467291:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,{Klijn_CCL:Lung=1,Breast=1},LOCAL_INVERSION:-:+:[29946],HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1,DYNC1H1->chr14:102430865-102517129:+,dynein_cytoplasmic_1_heavy_chain_1	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	2	0	TRUE	ACH-000871
NCIH510_LUNG	KIAA1467--TMEM123	2	0	KIAA1467	11392	chr12:13229077:+	TMEM123	27366	chr11:102272937:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	KIAA1467->chr12:13197218-13295455:+,TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	LNPEP--TRIM23	2	0	LNPEP	8811	chr5:96322374:+	TRIM23	45481	chr5:64900872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase,TRIM23->chr5:64885507-64921802:-,tripartite_motif_containing_23	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PLCB4--PLCB1	1	4	PLCB4	4901	chr20:9198099:+	PLCB1	54377	chr20:8630021:+	ONLY_REF_SPLICE	YES	22	28	0.19	0.15	0.0108	0.0432	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	NCIH510_LUNG	0.15	0.19	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PLCB4--PLCB1	1	4	PLCB4	4901	chr20:9198099:+	PLCB1	57052	chr20:8637831:+	ONLY_REF_SPLICE	YES	22	30	0.19	0.14	0.0108	0.0432	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	NCIH510_LUNG	0.14	0.19	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	R3HDM2--DCTN2	2	0	R3HDM2	1286	chr12:57824503:-	DCTN2	39713	chr12:57929628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_REARRANGEMENT:-:[99097],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,DCTN2->chr12:57923885-57941114:-,dynactin_subunit_2	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-1038A11.1--RIT2	2	0	RP11-1038A11.1	4371	chr12:5514622:+	RIT2	13036	chr18:40503728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	RP11-1038A11.1->chr12:5497755-5515817:+,RIT2->Ras-like_without_CAAX_2,chr18:40323192-40695657:-	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TAF1--BACE2	2	0	TAF1	28193	chrX:70644088:+	BACE2	62239	chr21:42647298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	TAF1->ArcherDX_panel,FoundationOne_panel,TATA-box_binding_protein_associated_factor_1,chrX:70586114-70752224:+,BACE2->beta-site_APP-cleaving_enzyme_2,chr21:42539728-42654445:+	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	THRAP3--HP1BP3	2	0	THRAP3	3151	chr1:36725085:+	HP1BP3	27101	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TMEM184B--CSNK1E	2	0	TMEM184B	4621	chr22:38641941:-	CSNK1E	26710	chr22:38699253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:-:[17657],TMEM184B->chr22:38615298-38669040:-,transmembrane_protein_184B,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	USP10--COTL1	2	0	USP10	1134	chr16:84733717:+	COTL1	26655	chr16:84623868:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	5	0	TRUE	ACH-000871
NCIH510_LUNG	VPS41--MIPEPP3	2	0	VPS41	4321	chr7:38937691:-	MIPEPP3	43587	chr13:21875558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	VPS41->VPS41,_HOPS_complex_subunit,chr7:38762563-38971994:-,MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	ADCY2--PRDM16	1	2	ADCY2	3659	chr5:7521012:+	PRDM16	71734	chr1:3347436:+	ONLY_REF_SPLICE	YES	27	0	0.1	1	0.0108	0.0216	ADCY2->adenylate_cyclase_2_(brain),chr5:7396321-7830194:+,PRDM16->Oncogene{Bushman},PR_domain_16,chr1:2985732-3355185:+	NCIH510_LUNG	0.1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PLCB4--PLCB1	1	2	PLCB4	4901	chr20:9198099:+	PLCB1	58153	chr20:8639185:+	ONLY_REF_SPLICE	YES	22	26	0.12	0.1	0.0108	0.0216	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	NCIH510_LUNG	0.1	0.12	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	LPHN3--ITSN1	1	1	LPHN3	1508	chr4:62067483:+	ITSN1	50626	chr21:35091102:+	ONLY_REF_SPLICE	NO	0	34	1	0.06	0.0108	0.0108	LPHN3->chr4:62066976-62944053:+,ITSN1->chr21:35014706-35272165:+,intersectin_1	NCIH510_LUNG	0.06	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-387D10.2--KCNJ6	1	1	RP11-387D10.2	3420	chr15:91256398:-	KCNJ6	12599	chr21:39087434:-	ONLY_REF_SPLICE	YES	2	2	0.5	0.5	0.0108	0.0108	RP11-387D10.2->chr15:91163239-91260372:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	NCIH510_LUNG	0.5	0.5	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-89K10.1--RP11-103H7.3	1	1	RP11-89K10.1	2156	chr8:127601535:+	RP11-103H7.3	15682	chr8:127534446:+	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0108	0.0108	LOCAL_REARRANGEMENT:+:[35524],RP11-89K10.1->chr8:127570120-127725660:+,RP11-103H7.3->chr8:127530943-127534596:+	NCIH510_LUNG	0.67	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	SDK2--ZNF652	1	1	SDK2	17682	chr17:71415305:-	ZNF652	56947	chr17:47395345:-	ONLY_REF_SPLICE	YES	17	3	0.11	0.4	0.0108	0.0108	SDK2->chr17:71330523-71640228:-,sidekick_cell_adhesion_molecule_2,ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652	NCIH510_LUNG	0.11	0.4	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
MDST8_LARGE_INTESTINE	RP11-440L14.1--CPLX1	33	1	RP11-440L14.1	1078	chr4:775560:-	CPLX1	13252	chr4:780486:-	ONLY_REF_SPLICE	YES	0	3	1	0.92	0.4663	0.0141	GTEx_FI:{Adipose_Tissue=[count:2=pct:0.7],Ovary=[count:1=pct:1.9],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:-:[3108],RP11-440L14.1->chr4:756175-775637:-,CPLX1->chr4:778745-819986:-,complexin_1	MDST8_LARGE_INTESTINE	0.92	1	0.4804	TRUE	1	4	0	1	4	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	RAB8B--RP11-321G12.1	30	10	RAB8B	1280	chr15:63481947:+	RP11-321G12.1	21602	chr15:63690586:+	ONLY_REF_SPLICE	YES	38	0	0.51	1	0.4239	0.1413	RAB8B->RAB8B,_member_RAS_oncogene_family,chr15:63481668-63559981:+,RP11-321G12.1->chr15:63682335-63729347:+	MDST8_LARGE_INTESTINE	0.51	1	0.5652	TRUE	0	0	0	1	0	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	AC139887.4--CPLX1	7	4	AC139887.4	1586	chr4:758277:-	CPLX1	9265	chr4:780486:-	INCL_NON_REF_SPLICE	YES	0	3	1	0.79	0.0989	0.0565	LOCAL_REARRANGEMENT:-:[19883],AC139887.4->chr4:758275-758862:-,CPLX1->chr4:778745-819986:-,complexin_1	MDST8_LARGE_INTESTINE	0.79	1	0.1554	TRUE	0	2	0	1	2	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	RC3H1--RP11-160H22.5	3	0	RC3H1	7810	chr1:173947626:-	RP11-160H22.5	36278	chr1:174084787:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0424	0	LOCAL_REARRANGEMENT:-:[93003],RC3H1->chr1:173900352-173991435:-,ring_finger_and_CCCH-type_domains_1,RP11-160H22.5->chr1:174084438-174129142:-	MDST8_LARGE_INTESTINE	1	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	VIM--ACTB	3	0	VIM	2082	chr10:17271339:+	ACTB	15618	chr7:5570234:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MDST8_LARGE_INTESTINE	1	1	0.0424	TRUE	0	0	0	9	0	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	RP11-444D3.1--BCAT1	2	1	RP11-444D3.1	1253	chr12:24715272:-	BCAT1	16803	chr12:25054819:-	ONLY_REF_SPLICE	YES	5	33	0.38	0.08	0.0283	0.0141	RP11-444D3.1->chr12:24366190-24715524:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	MDST8_LARGE_INTESTINE	0.08	0.38	0.0424	TRUE	0	0	0	2	0	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	SULT1B1--CHMP1A	2	0	SULT1B1	6393	chr4:70615439:-	CHMP1A	24243	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx&tcga_normals:1/3694=0.03%,SULT1B1->chr4:70586880-70653679:-,sulfotransferase_family_1B_member_1,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	MDST8_LARGE_INTESTINE	1	1	0.0283	TRUE	0	1	1	1	1	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	ZNF519--CHMP1A	2	0	ZNF519	2343	chr18:14124349:-	CHMP1A	27273	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Muscularis=1},ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	MDST8_LARGE_INTESTINE	1	1	0.0283	TRUE	1	2	0	4	2	TRUE	ACH-000935
TE4_OESOPHAGUS	MYO1E--RP11-507B12.2	28	6	MYO1E	30587	chr15:59445789:-	RP11-507B12.2	42278	chr15:61592738:-	ONLY_REF_SPLICE	YES	40	0	0.46	1	0.4676	0.1002	MYO1E->chr15:59427113-59665099:-,myosin_IE,RP11-507B12.2->chr15:61592525-61927648:-	TE4_OESOPHAGUS	0.46	1	0.5678	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	PAPOLA--GSKIP	22	5	PAPOLA	2168	chr14:96968937:+	GSKIP	39454	chr14:96851860:+	ONLY_REF_SPLICE	YES	24	13	0.53	0.68	0.3674	0.0835	PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,GSKIP->GSK3B_interacting_protein,chr14:96829814-96853625:+	TE4_OESOPHAGUS	0.53	0.68	0.4509	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	INTS3--S100A7A	11	0	INTS3	12021	chr1:153730239:+	S100A7A	31529	chr1:153390542:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1837	0	INTS3->chr1:153700543-153746555:+,integrator_complex_subunit_3,S100A7A->S100_calcium_binding_protein_A7A,chr1:153389000-153395701:+	TE4_OESOPHAGUS	1	1	0.1837	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	TAOK1--NLK	7	4	TAOK1	1561	chr17:27718042:+	NLK	51940	chr17:26512205:+	ONLY_REF_SPLICE	YES	1	5	0.92	0.69	0.1169	0.0668	PROTCLUST,TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,NLK->chr17:26368763-26523407:+,nemo_like_kinase	TE4_OESOPHAGUS	0.69	0.92	0.1837	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	BCAS3--TEC	5	1	BCAS3	16133	chr17:58964572:+	TEC	74793	chr4:48143436:-	ONLY_REF_SPLICE	YES	0	5	1	0.55	0.0835	0.0167	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,TEC->chr4:48137800-48271881:-,tec_protein_tyrosine_kinase	TE4_OESOPHAGUS	0.55	1	0.1002	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	AP000304.12--MCM3	3	0	AP000304.12	3253	chr21:35279678:-	MCM3	22974	chr6:52130166:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	AP000304.12->chr21:34956993-35284635:-,MCM3->chr6:52128807-52149679:-,minichromosome_maintenance_complex_component_3	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	ATP13A1--FARSB	3	0	ATP13A1	7850	chr19:19766006:-	FARSB	23602	chr2:223507603:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	ATP13A1->ATPase_13A1,chr19:19756007-19774502:-,FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	BFSP1--STRBP	3	0	BFSP1	4872	chr20:17539333:-	STRBP	25092	chr9:125946577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0501	0	BFSP1->beaded_filament_structural_protein_1,chr20:17474550-17549865:-,STRBP->chr9:125871779-126030855:-,spermatid_perinuclear_RNA_binding_protein	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	LYPD1--FOXJ3	3	0	LYPD1	6186	chr2:133403625:-	FOXJ3	23213	chr1:42657057:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	LYPD1->LY6/PLAUR_domain_containing_1,chr2:133402426-133429152:-,FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	RAD1--ATP5G3	3	0	RAD1	3979	chr5:34915831:-	ATP5G3	18525	chr2:176046398:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	RAD1->RAD1_checkpoint_DNA_exonuclease,chr5:34905369-34919094:-,ATP5G3->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C3_(subunit_9),chr2:176040986-176049335:-	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	SH3GLB2--PYGB	3	0	SH3GLB2	11875	chr9:131770752:-	PYGB	37439	chr20:25277700:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	SH3GLB2->SH3_domain_containing_GRB2_like_endophilin_B2,chr9:131769315-131790582:-,PYGB->chr20:25228705-25278650:+,phosphorylase,_glycogen;_brain	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	XRCC6--NOB1	3	0	XRCC6	4673	chr22:42032620:+	NOB1	21225	chr16:69782172:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,NOB1->NIN1/PSMD8_binding_protein_1_homolog,chr16:69775770-69788843:-	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	C17orf76-AS1--RBBP7	2	0	C17orf76-AS1	1593	chr17:16342728:+	RBBP7	14397	chrX:16887343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	C17orf76-AS1->chr17:16342136-16381992:+,RBBP7->Oncogene{Bushman},chrX:16857406-16888537:-,retinoblastoma_binding_protein_7	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	CCDC101--NPC1	2	0	CCDC101	2273	chr16:28592465:+	NPC1	25506	chr18:21125113:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	CCDC101->chr16:28565236-28603111:+,NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	CTD-2369P2.10--RAVER1	2	0	CTD-2369P2.10	5380	chr19:10418861:-	RAVER1	12326	chr19:10439787:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:-:[203],CTD-2369P2.10->chr19:10416103-10426685:-,RAVER1->chr19:10426888-10444316:-,ribonucleoprotein,_PTB_binding_1	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	ELF2--CANX	2	0	ELF2	11008	chr4:140005287:-	CANX	44991	chr5:179155592:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,CANX->calnexin,chr5:179105629-179157926:+	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	FCHSD2--NUMA1	2	0	FCHSD2	1405	chr11:72852902:-	NUMA1	43541	chr11:71747021:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	GOSR1--CDK12	2	0	GOSR1	10351	chr17:28819771:+	CDK12	28391	chr17:37646810:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	NAGK--GNB2L1	2	0	NAGK	5920	chr2:71297969:+	GNB2L1	25805	chr5:180665239:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	NAGK->N-acetylglucosamine_kinase,chr2:71291474-71306935:+,GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	NDUFAF6--CHD7	2	0	NDUFAF6	1161	chr8:95908155:+	CHD7	38153	chr8:61653818:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	NOTCH3--RAB8A	2	0	NOTCH3	2273	chr19:15308311:-	RAB8A	37719	chr19:16243022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	NOTCH3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:15270444-15311792:-,notch_3,RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	RHOA--TTC19	2	0	RHOA	2179	chr3:49449253:-	TTC19	21578	chr17:15928331:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,TTC19->chr17:15902694-15948329:+,tetratricopeptide_repeat_domain_19	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	SENP1--MAPRE1	2	0	SENP1	9371	chr12:48477374:-	MAPRE1	34304	chr20:31436478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	SENP1->SUMO1/sentrin_specific_peptidase_1,chr12:48436681-48500091:-,MAPRE1->Oncogene{Bushman},chr20:31407699-31438211:+,microtubule_associated_protein_RP/EB_family_member_1	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	SRP14-AS1--SNHG15	2	0	SRP14-AS1	2247	chr15:40338270:+	SNHG15	13218	chr7:45024025:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	HGNC_GENEFAM,SRP14-AS1->SRP14_antisense_RNA1_(head_to_head),chr15:40331512-40359491:+,SNHG15->chr7:45022622-45026560:-,small_nucleolar_RNA_host_gene_15	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	STRN3--SCFD1	2	0	STRN3	1498	chr14:31495110:-	SCFD1	47090	chr14:31163979:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	{Klijn_CCL:Brain=1,Liver=1},STRN3->chr14:31363005-31495607:-,striatin_3,SCFD1->chr14:31091318-31205018:+,sec1_family_domain_containing_1	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	TASP1--ZNF839	2	0	TASP1	12602	chr20:13539655:-	ZNF839	28412	chr14:102792322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	TASP1->chr20:13246709-13619587:-,taspase_1,ZNF839->chr14:102783714-102809044:+,zinc_finger_protein_839	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	TET2--PPA2	2	0	TET2	4071	chr4:106111662:+	PPA2	47041	chr4:106292030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[89261],TET2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:106067032-106200973:+,tet_methylcytosine_dioxygenase_2,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	WDFY3--PPA2	2	0	WDFY3	3377	chr4:85818064:-	PPA2	98130	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	WDFY3->WD_repeat_and_FYVE_domain_containing_3,chr4:85590704-85887544:-,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	SLC45A4--UGT3A2	1	3	SLC45A4	2851	chr8:142264088:-	UGT3A2	23916	chr5:36064452:-	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0167	0.0501	SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4,UGT3A2->UDP_glycosyltransferase_family_3_member_A2,chr5:36035119-36071460:-	TE4_OESOPHAGUS	0.4	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	KLF12--SCEL	1	2	KLF12	4990	chr13:74419964:-	SCEL	23361	chr13:78129992:+	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0167	0.0334	KLF12->Kruppel-like_factor_12,chr13:74260226-74708394:-,SCEL->chr13:78109809-78219398:+,sciellin	TE4_OESOPHAGUS	0.33	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	PPP6R3--IKZF3	1	2	PPP6R3	2237	chr11:68272739:+	IKZF3	47721	chr17:37922746:-	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0167	0.0334	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	TE4_OESOPHAGUS	0.13	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	EZR--RSPH3	1	1	EZR	2248	chr6:159239114:-	RSPH3	25887	chr6:159399378:-	ONLY_REF_SPLICE	YES	48	5	0.04	0.29	0.0167	0.0167	EZR->chr6:159186773-159240444:-,ezrin,RSPH3->chr6:159393903-159421219:-,radial_spoke_3_homolog	TE4_OESOPHAGUS	0.04	0.29	0.0334	TRUE	0	0	0	3	0	TRUE	ACH-000917
TE4_OESOPHAGUS	SLC45A4--UGT3A2	1	1	SLC45A4	2851	chr8:142264088:-	UGT3A2	25018	chr5:36052086:-	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0167	0.0167	SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4,UGT3A2->UDP_glycosyltransferase_family_3_member_A2,chr5:36035119-36071460:-	TE4_OESOPHAGUS	0.25	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
A673_BONE	EWSR1--FLI1	319	137	EWSR1	11554	chr22:29683123:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	410	3	0.53	0.99	2.8901	1.2412	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	A673_BONE	0.53	0.99	4.1313	TRUE	0	0	0	6	0	TRUE	ACH-000052
A673_BONE	SUPT20H--CHRDL2	94	16	SUPT20H	1155	chr13:37633696:-	CHRDL2	46537	chr11:74408342:-	ONLY_REF_SPLICE	YES	22	0	0.83	1	0.8516	0.145	SUPT20H->SPT20_homolog,_SAGA_complex_component,chr13:37583449-37633850:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	A673_BONE	0.83	1	0.9966	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	AC005562.1--SP2	49	17	AC005562.1	8359	chr17:28937960:+	SP2	20548	chr17:45992678:+	ONLY_REF_SPLICE	YES	24	1	0.73	0.99	0.4439	0.154	AC005562.1->chr17:28903482-28999807:+,SP2->Sp2_transcription_factor,chr17:45973516-46006323:+	A673_BONE	0.73	0.99	0.5979	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	LINC00221--SPG7	47	7	LINC00221	8624	chr14:106962380:+	SPG7	24377	chr16:89592737:+	ONLY_REF_SPLICE	YES	0	61	1	0.47	0.4258	0.0634	LINC00221->chr14:106938445-106977000:+,long_intergenic_non-protein_coding_RNA_221,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	A673_BONE	0.47	1	0.4892	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	SUPT20H--CHRDL2	17	24	SUPT20H	1234	chr13:37633617:-	CHRDL2	46537	chr11:74408342:-	ONLY_REF_SPLICE	YES	50	0	0.45	1	0.154	0.2174	SUPT20H->SPT20_homolog,_SAGA_complex_component,chr13:37583449-37633850:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	A673_BONE	0.45	1	0.3714	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	EWSR1--FLI1	2	76	EWSR1	11554	chr22:29683123:+	FLI1	39468	chr11:128677075:+	ONLY_REF_SPLICE	YES	410	3	0.16	0.96	0.0181	0.6885	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	A673_BONE	0.16	0.96	0.7066	TRUE	0	0	0	4	0	TRUE	ACH-000052
A673_BONE	LINC00221--SPG7	19	3	LINC00221	8624	chr14:106962380:+	SPG7	25789	chr16:89595885:+	ONLY_REF_SPLICE	YES	0	82	1	0.21	0.1721	0.0272	LINC00221->chr14:106938445-106977000:+,long_intergenic_non-protein_coding_RNA_221,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	A673_BONE	0.21	1	0.1993	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	CYP7B1--RP11-32K4.1	18	3	CYP7B1	1296	chr8:65711023:-	RP11-32K4.1	24443	chr8:64599789:-	ONLY_REF_SPLICE	YES	17	0	0.55	1	0.1631	0.0272	CYP7B1->Oncogene{Bushman},chr8:65500320-65711318:-,cytochrome_P450_family_7_subfamily_B_member_1,RP11-32K4.1->chr8:64599737-65281115:-	A673_BONE	0.55	1	0.1903	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	EWSR1--FLI1	1	53	EWSR1	11554	chr22:29683123:+	FLI1	40528	chr11:128679052:+	ONLY_REF_SPLICE	YES	410	42	0.12	0.56	0.0091	0.4802	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	A673_BONE	0.12	0.56	0.4893	TRUE	0	0	0	5	0	TRUE	ACH-000052
A673_BONE	UBE2G1--MYH2	7	1	UBE2G1	1358	chr17:4269566:-	MYH2	33895	chr17:10431191:-	ONLY_REF_SPLICE	YES	96	0	0.08	1	0.0634	0.0091	UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,MYH2->chr17:10424465-10453274:-,myosin,_heavy_chain_2,_skeletal_muscle,_adult	A673_BONE	0.08	1	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	SUPT20H--CHRDL2	1	24	SUPT20H	1519	chr13:37633332:-	CHRDL2	46537	chr11:74408342:-	ONLY_REF_SPLICE	YES	50	0	0.33	1	0.0091	0.2174	SUPT20H->SPT20_homolog,_SAGA_complex_component,chr13:37583449-37633850:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	A673_BONE	0.33	1	0.2265	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	AC005562.1--SP2	2	17	AC005562.1	9444	chr17:28942998:+	SP2	20548	chr17:45992678:+	ONLY_REF_SPLICE	YES	28	1	0.4	0.95	0.0181	0.154	AC005562.1->chr17:28903482-28999807:+,SP2->Sp2_transcription_factor,chr17:45973516-46006323:+	A673_BONE	0.4	0.95	0.1721	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	PTMA--PTMS	5	0	PTMA	6054	chr2:232576687:+	PTMS	13976	chr12:6879341:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	1	1	0.0453	TRUE	0	0	0	16	0	TRUE	ACH-000052
A673_BONE	GPI--UBB	4	0	GPI	6789	chr19:34868440:+	UBB	24216	chr17:16285477:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase,UBB->chr17:16284112-16286059:+,ubiquitin_B	A673_BONE	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	SNHG3--GNAS	4	0	SNHG3	3181	chr1:28834672:+	GNAS	24750	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	A673_BONE	1	1	0.0362	TRUE	0	0	0	2	0	TRUE	ACH-000052
A673_BONE	AC005562.1--SP2	3	1	AC005562.1	8359	chr17:28937960:+	SP2	23367	chr17:46000328:+	ONLY_REF_SPLICE	YES	24	47	0.14	0.08	0.0272	0.0091	AC005562.1->chr17:28903482-28999807:+,SP2->Sp2_transcription_factor,chr17:45973516-46006323:+	A673_BONE	0.08	0.14	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	PTMA--PTMS	3	0	PTMA	6060	chr2:232576693:+	PTMS	13988	chr12:6879353:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	1	1	0.0272	TRUE	0	0	0	16	0	TRUE	ACH-000052
A673_BONE	CYP7B1--RP11-32K4.1	1	5	CYP7B1	1296	chr8:65711023:-	RP11-32K4.1	23208	chr8:64641566:-	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0091	0.0453	CYP7B1->Oncogene{Bushman},chr8:65500320-65711318:-,cytochrome_P450_family_7_subfamily_B_member_1,RP11-32K4.1->chr8:64599737-65281115:-	A673_BONE	0.26	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	LINC00221--SPG7	2	1	LINC00221	8624	chr14:106962380:+	SPG7	26995	chr16:89597091:+	ONLY_REF_SPLICE	YES	0	60	1	0.05	0.0181	0.0091	LINC00221->chr14:106938445-106977000:+,long_intergenic_non-protein_coding_RNA_221,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	A673_BONE	0.05	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	HMGA2--CAND1	2	0	HMGA2	5315	chr12:66232349:+	CAND1	29660	chr12:67675690:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1	A673_BONE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	KAT6B--TSPAN14	2	0	KAT6B	5638	chr10:76603236:+	TSPAN14	37709	chr10:82248973:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B,TSPAN14->chr10:82213922-82292879:+,tetraspanin_14	A673_BONE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	LIPI--ABCA13	2	0	LIPI	1046	chr21:15583121:-	ABCA13	91658	chr7:48654881:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LIPI->chr21:15481134-15583166:-,lipase_I,ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+	A673_BONE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	RTCB--ATRX	2	0	RTCB	2851	chr22:32804162:-	ATRX	55744	chrX:76776394:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	RTCB->RNA_2',3'-cyclic_phosphate_and_5'-OH_ligase,chr22:32783569-32808242:-,ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-	A673_BONE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000052
SNU81_LARGE_INTESTINE	RPL10--THRA	4	0	RPL10	4459	chrX:153627935:+	THRA	29717	chr17:38249638:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0	RPL10->Oncogene{Bushman},chrX:153618315-153637504:+,ribosomal_protein_L10,THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha	SNU81_LARGE_INTESTINE	1	1	0.0753	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	BDP1--H2AFV	3	0	BDP1	7182	chr5:70763314:+	H2AFV	55984	chr7:44874161:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0	BDP1->B_double_prime_1,_subunit_of_RNA_polymerase_III_transcription_initiation_factor_IIIB,chr5:70751442-70863649:+,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	CD82--ERBB2	3	0	CD82	15463	chr11:44640742:+	ERBB2	43637	chr17:37884153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	HGNC_GENEFAM,CD82->CD82_molecule,Oncogene{Bushman},chr11:44585977-44641913:+,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	CUL9--TPD52L2	3	0	CUL9	24876	chr6:43189748:+	TPD52L2	31706	chr20:62500759:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	CUL9->chr6:43149913-43192325:+,cullin_9,TPD52L2->chr20:62496596-62522898:+,tumor_protein_D52_like_2	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	FUCA2--CASZ1	3	0	FUCA2	1185	chr6:143832643:-	CASZ1	21405	chr1:10719899:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	FUCA2->chr6:143815948-143832827:-,fucosidase,_alpha-L-_2,_plasma,CASZ1->castor_zinc_finger_1,chr1:10696661-10856707:-	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	GSTP1--SUGT1	3	0	GSTP1	1928	chr11:67351993:+	SUGT1	7227	chr13:53227004:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1,SUGT1->SGT1_homolog,_MIS12_kinetochore_complex_assembly_cochaperone,chr13:53226844-53275044:+	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	LENG8--MSTO1	3	0	LENG8	10294	chr19:54969902:+	MSTO1	18120	chr1:155581489:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,MSTO1->chr1:155579979-155718153:+,misato_1,_mitochondrial_distribution_and_morphology_regulator	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	LENG8--MSTO1	3	0	LENG8	10294	chr19:54969902:+	MSTO1	22872	chr1:155717069:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,MSTO1->chr1:155579979-155718153:+,misato_1,_mitochondrial_distribution_and_morphology_regulator	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	LMO7--CLTA	3	0	LMO7	35970	chr13:76417052:+	CLTA	49839	chr9:36197548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0	LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+,CLTA->chr9:36190853-36304778:+,clathrin_light_chain_A	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	NEAT1--NAGK	3	0	NEAT1	1605	chr11:65190849:+	NAGK	36480	chr2:71302787:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),NAGK->N-acetylglucosamine_kinase,chr2:71291474-71306935:+	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	RAB1B--RNF38	3	0	RAB1B	4790	chr11:66044239:+	RNF38	20016	chr9:36353236:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	RAB1B->RAB1B,_member_RAS_oncogene_family,chr11:66036004-66044963:+,RNF38->chr9:36336393-36487545:-,ring_finger_protein_38	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	SH3BP2--MTHFD2	3	0	SH3BP2	26310	chr4:2838870:+	MTHFD2	43913	chr2:74443974:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	SH3BP2->Oncogene{Bushman},SH3_domain_binding_protein_2,chr4:2794750-2842825:+,MTHFD2->chr2:74425689-74444692:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_2,_methenyltetrahydrofolate_cyclohydrolase	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	DHX36--ARID2	2	0	DHX36	15916	chr3:154011537:-	ARID2	42876	chr12:46231104:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	DHX36->DEAH-box_helicase_36,chr3:153990335-154042286:-,ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	FRS2--CORO1C	2	0	FRS2	1182	chr12:69864310:+	CORO1C	27912	chr12:109095099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	MLTK--RAPGEF4	2	0	MLTK	5626	chr2:174034620:+	RAPGEF4	51193	chr2:173825488:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:+:[22542],MLTK->chr2:173940163-174132738:+,RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	NUP160--OCLN	2	0	NUP160	23053	chr11:47819331:-	OCLN	38476	chr5:68800004:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa,OCLN->chr5:68788119-68853931:+,occludin	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	RBM26--SNX1	2	0	RBM26	1774	chr13:79979839:-	SNX1	34579	chr15:64404772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	RCC1--HSPD1	2	0	RCC1	2175	chr1:28834672:+	HSPD1	26108	chr2:198358216:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	RPL10A--SLC22A18	2	0	RPL10A	1620	chr6:35436804:+	SLC22A18	18304	chr11:2943332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	RPL10A->chr6:35436185-35438562:+,ribosomal_protein_L10a,SLC22A18->Oncogene{Bushman},chr11:2920951-2946476:+,solute_carrier_family_22_member_18	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	SEL1L--ZC3H14	2	0	SEL1L	6630	chr14:81969065:-	ZC3H14	36347	chr14:89041037:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	GTEx&tcga_normals:1/3694=0.03%,SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	TMEM67--KNSTRN	2	0	TMEM67	33371	chr8:94828743:+	KNSTRN	44490	chr15:40681707:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	TMEM67->chr8:94767072-94831462:+,transmembrane_protein_67,KNSTRN->chr15:40674922-40686447:+,kinetochore-localized_astrin/SPAG5_binding_protein	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	TNFRSF10B--WDR11	2	0	TNFRSF10B	5034	chr8:22888272:-	WDR11	32809	chr10:122640338:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	TNFRSF10B->chr8:22877646-22926692:-,tumor_necrosis_factor_receptor_superfamily_member_10b,WDR11->Oncogene{Bushman},WD_repeat_domain_11,chr10:122610687-122669036:+	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
ONS76_CENTRAL_NERVOUS_SYSTEM	GNA11--CCDC94	133	86	GNA11	1378	chr19:3094785:+	CCDC94	24223	chr19:4268581:+	ONLY_REF_SPLICE	YES	38	29	0.85	0.88	1.694	1.0953	GNA11->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_11,Oncogene{Bushman},OncomapV4_panel,chr19:3094408-3124002:+,CCDC94->chr19:4247076-4269087:+,coiled-coil_domain_containing_94	ONS76_CENTRAL_NERVOUS_SYSTEM	0.85	0.88	2.7893	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	ZC3H15--SLC39A10	97	59	ZC3H15	3333	chr2:187360061:+	SLC39A10	17603	chr2:196470860:+	ONLY_REF_SPLICE	YES	62	0	0.72	1	1.2354	0.7515	ZC3H15->chr2:187350883-187374090:+,zinc_finger_CCCH-type_containing_15,SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10	ONS76_CENTRAL_NERVOUS_SYSTEM	0.72	1	1.9869	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RAB11B--TMOD3	104	1	RAB11B	1476	chr19:8455340:+	TMOD3	32881	chr15:52226447:+	ONLY_REF_SPLICE	YES	13	1	0.89	0.99	1.3246	0.0127	RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,TMOD3->chr15:52121825-52239492:+,tropomodulin_3	ONS76_CENTRAL_NERVOUS_SYSTEM	0.89	0.99	1.3373	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MAPK6--FBN1	82	21	MAPK6	3577	chr15:52311573:+	FBN1	21726	chr15:48937147:-	ONLY_REF_SPLICE	YES	40	4	0.72	0.96	1.0444	0.2675	MAPK6->Oncogene{Bushman},chr15:52244303-52358462:+,mitogen-activated_protein_kinase_6,FBN1->chr15:48700503-48938046:-,fibrillin_1	ONS76_CENTRAL_NERVOUS_SYSTEM	0.72	0.96	1.3119	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	IMMP2L--DOCK4	49	10	IMMP2L	1667	chr7:111201907:-	DOCK4	73934	chr7:111372343:-	ONLY_REF_SPLICE	YES	16	33	0.79	0.64	0.6241	0.1274	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	ONS76_CENTRAL_NERVOUS_SYSTEM	0.64	0.79	0.7515	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	ZNF77--AC011526.1	44	6	ZNF77	1134	chr19:2944836:-	AC011526.1	15106	chr19:41962392:-	ONLY_REF_SPLICE	YES	0	11	1	0.82	0.5604	0.0764	ZNF77->chr19:2933216-2944969:-,zinc_finger_protein_77,AC011526.1->chr19:41960074-42006559:-	ONS76_CENTRAL_NERVOUS_SYSTEM	0.82	1	0.6368	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MAPK6--FBN1	35	15	MAPK6	3577	chr15:52311573:+	FBN1	26688	chr15:48905289:-	ONLY_REF_SPLICE	YES	40	41	0.56	0.55	0.4458	0.191	MAPK6->Oncogene{Bushman},chr15:52244303-52358462:+,mitogen-activated_protein_kinase_6,FBN1->chr15:48700503-48938046:-,fibrillin_1	ONS76_CENTRAL_NERVOUS_SYSTEM	0.55	0.56	0.6368	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	PEX11G--NRL	29	0	PEX11G	3750	chr19:7553837:-	NRL	16382	chr14:24553954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3694	0	PEX11G->chr19:7541761-7562335:-,peroxisomal_biogenesis_factor_11_gamma,NRL->chr14:24549316-24584223:-,neural_retina_leucine_zipper	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.3694	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RPAP2--MTF2	23	9	RPAP2	11085	chr1:92801984:+	MTF2	34703	chr1:93575787:+	ONLY_REF_SPLICE	YES	14	35	0.7	0.48	0.2929	0.1146	RPAP2->RNA_polymerase_II_associated_protein_2,chr1:92764522-92867613:+,MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2	ONS76_CENTRAL_NERVOUS_SYSTEM	0.48	0.7	0.4075	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	SUFU--TMEM180	19	3	SUFU	2483	chr10:104269060:+	TMEM180	25288	chr10:104228712:+	ONLY_REF_SPLICE	YES	11	16	0.67	0.58	0.242	0.0382	LOCAL_REARRANGEMENT:+:[26942],SUFU->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SUFU_negative_regulator_of_hedgehog_signaling,chr10:104263744-104393292:+,TMEM180->chr10:104221149-104236802:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.58	0.67	0.2802	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	ZNF77--AC011526.1	15	7	ZNF77	1134	chr19:2944836:-	AC011526.1	14670	chr19:41962828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.191	0.0892	ZNF77->chr19:2933216-2944969:-,zinc_finger_protein_77,AC011526.1->chr19:41960074-42006559:-	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.2802	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	ZC3H15--SLC39A10	5	25	ZC3H15	3333	chr2:187360061:+	SLC39A10	22606	chr2:196544756:+	ONLY_REF_SPLICE	YES	62	30	0.33	0.5	0.0637	0.3184	ZC3H15->chr2:187350883-187374090:+,zinc_finger_CCCH-type_containing_15,SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10	ONS76_CENTRAL_NERVOUS_SYSTEM	0.33	0.5	0.3821	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	TRAP1--CREBBP	10	1	TRAP1	1177	chr16:3767422:-	CREBBP	49184	chr16:3799684:-	ONLY_REF_SPLICE	YES	15	10	0.42	0.52	0.1274	0.0127	LOCAL_REARRANGEMENT:-:[7457],TRAP1->Oncogene{Bushman},TNF_receptor_associated_protein_1,chr16:3701640-3767598:-,CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-	ONS76_CENTRAL_NERVOUS_SYSTEM	0.42	0.52	0.1401	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	CLPX--CCDC171	9	4	CLPX	1268	chr15:65477413:-	CCDC171	45732	chr9:15777598:+	ONLY_REF_SPLICE	YES	39	2	0.25	0.87	0.1146	0.0509	CLPX->caseinolytic_mitochondrial_matrix_peptidase_chaperone_subunit,chr15:65440557-65477680:-,CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171	ONS76_CENTRAL_NERVOUS_SYSTEM	0.25	0.87	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	DENND4A--ANKDD1A	7	6	DENND4A	1284	chr15:66084348:-	ANKDD1A	42462	chr15:65207996:+	ONLY_REF_SPLICE	YES	5	0	0.72	1	0.0892	0.0764	DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,ANKDD1A->ankyrin_repeat_and_death_domain_containing_1A,chr15:65204101-65251042:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.72	1	0.1656	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	DENND4A--ANKDD1A	6	2	DENND4A	1284	chr15:66084348:-	ANKDD1A	46952	chr15:65218265:+	ONLY_REF_SPLICE	YES	5	4	0.62	0.67	0.0764	0.0255	DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,ANKDD1A->ankyrin_repeat_and_death_domain_containing_1A,chr15:65204101-65251042:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.62	0.67	0.1019	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	CNTN5--CDH12	5	3	CNTN5	1318	chr11:98892000:+	CDH12	45814	chr5:22212752:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0637	0.0382	CNTN5->chr11:98891683-100229616:+,contactin_5,CDH12->cadherin_12,chr5:21750782-22853731:-	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.1019	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	DENND4A--ANKDD1A	5	3	DENND4A	1284	chr15:66084348:-	ANKDD1A	45853	chr15:65214120:+	ONLY_REF_SPLICE	YES	5	3	0.62	0.73	0.0637	0.0382	DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,ANKDD1A->ankyrin_repeat_and_death_domain_containing_1A,chr15:65204101-65251042:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.62	0.73	0.1019	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MAPK6--FBN1	2	15	MAPK6	7684	chr15:52320070:+	FBN1	26688	chr15:48905289:-	ONLY_REF_SPLICE	YES	49	41	0.26	0.29	0.0255	0.191	MAPK6->Oncogene{Bushman},chr15:52244303-52358462:+,mitogen-activated_protein_kinase_6,FBN1->chr15:48700503-48938046:-,fibrillin_1	ONS76_CENTRAL_NERVOUS_SYSTEM	0.26	0.29	0.2165	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	CDKN2B-AS1--SOX13	5	2	CDKN2B-AS1	1384	chr9:21995160:+	SOX13	29172	chr1:204082043:+	ONLY_REF_SPLICE	YES	0	6	1	0.54	0.0637	0.0255	CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+,SOX13->SRY-box_13,chr1:204042243-204096863:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.54	1	0.0892	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	TRAP1--CREBBP	5	2	TRAP1	2246	chr16:3760386:-	CREBBP	49184	chr16:3799684:-	ONLY_REF_SPLICE	YES	65	10	0.1	0.41	0.0637	0.0255	LOCAL_REARRANGEMENT:-:[7457],TRAP1->Oncogene{Bushman},TNF_receptor_associated_protein_1,chr16:3701640-3767598:-,CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-	ONS76_CENTRAL_NERVOUS_SYSTEM	0.1	0.41	0.0892	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	DENND4A--ANKDD1A	5	1	DENND4A	1284	chr15:66084348:-	ANKDD1A	48886	chr15:65223020:+	ONLY_REF_SPLICE	YES	5	8	0.55	0.43	0.0637	0.0127	DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,ANKDD1A->ankyrin_repeat_and_death_domain_containing_1A,chr15:65204101-65251042:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.43	0.55	0.0764	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	SUFU--TMEM180	4	4	SUFU	2483	chr10:104269060:+	TMEM180	23514	chr10:104225739:+	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0509	0.0509	LOCAL_REARRANGEMENT:+:[26942],SUFU->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SUFU_negative_regulator_of_hedgehog_signaling,chr10:104263744-104393292:+,TMEM180->chr10:104221149-104236802:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.42	1	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	PEX11G--NRL	4	0	PEX11G	3353	chr19:7554234:-	NRL	16382	chr14:24553954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0509	0	PEX11G->chr19:7541761-7562335:-,peroxisomal_biogenesis_factor_11_gamma,NRL->chr14:24549316-24584223:-,neural_retina_leucine_zipper	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	URI1--ZNF536	3	4	URI1	19282	chr19:30503438:+	ZNF536	41024	chr19:31201664:+	ONLY_REF_SPLICE	YES	106	0	0.06	1	0.0382	0.0509	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,ZNF536->chr19:30719197-31204445:+,zinc_finger_protein_536	ONS76_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0891	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MIR205HG--RPS28	3	0	MIR205HG	4432	chr1:209605596:+	RPS28	8361	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0382	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	SDC1--RPL18AP3	3	0	SDC1	6963	chr2:20402403:-	RPL18AP3	11879	chr12:104659126:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,RPL18AP3->chr12:104659056-104659669:+,ribosomal_protein_L18a_pseudogene_3	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0382	TRUE	0	0	0	2	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	XXyac-YX65C7_A.2--RNASET2	2	2	XXyac-YX65C7_A.2	2234	chr6:169614582:+	RNASET2	14448	chr6:167356577:-	ONLY_REF_SPLICE	YES	0	36	1	0.1	0.0255	0.0255	XXyac-YX65C7_A.2->chr6:169613349-169639660:+,RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2	ONS76_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.051	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	TFB1M--TMEM120B	2	0	TFB1M	1198	chr6:155635430:-	TMEM120B	21394	chr12:122199555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	XXyac-YX65C7_A.2--RNASET2	1	2	XXyac-YX65C7_A.2	2234	chr6:169614582:+	RNASET2	11366	chr6:167362113:-	ONLY_REF_SPLICE	NO	0	36	1	0.08	0.0127	0.0255	XXyac-YX65C7_A.2->chr6:169613349-169639660:+,RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2	ONS76_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.0382	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	CLPX--CCDC171	1	1	CLPX	1268	chr15:65477413:-	CCDC171	46959	chr9:15778966:+	ONLY_REF_SPLICE	YES	39	10	0.05	0.17	0.0127	0.0127	CLPX->caseinolytic_mitochondrial_matrix_peptidase_chaperone_subunit,chr15:65440557-65477680:-,CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171	ONS76_CENTRAL_NERVOUS_SYSTEM	0.05	0.17	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RPS6KA2--RP11-252P19.1	1	1	RPS6KA2	12660	chr6:166944720:-	RP11-252P19.1	43201	chr6:166188341:+	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0127	0.0127	RPS6KA2->chr6:166822852-167319939:-,ribosomal_protein_S6_kinase_A2,RP11-252P19.1->chr6:166167677-166189268:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	XXyac-YX65C7_A.2--RNASET2	1	1	XXyac-YX65C7_A.2	2234	chr6:169614582:+	RNASET2	15519	chr6:167352496:-	ONLY_REF_SPLICE	NO	0	37	1	0.05	0.0127	0.0127	XXyac-YX65C7_A.2->chr6:169613349-169639660:+,RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2	ONS76_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000776
G402_SOFT_TISSUE	FLRT2--LINC00911	4	0	FLRT2	1391	chr14:85996878:+	LINC00911	21941	chr14:85886028:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	FLRT2->chr14:85996488-86095034:+,fibronectin_leucine_rich_transmembrane_protein_2,LINC00911->chr14:85860223-85886418:+,long_intergenic_non-protein_coding_RNA_911	G402_SOFT_TISSUE	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000375
G402_SOFT_TISSUE	ISPD--SOSTDC1	3	0	ISPD	2534	chr7:16445686:-	SOSTDC1	18686	chr7:16505169:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_REARRANGEMENT:-:[40159],ISPD->chr7:16130817-16460947:-,isoprenoid_synthase_domain_containing,SOSTDC1->chr7:16501106-16570205:-,sclerostin_domain_containing_1	G402_SOFT_TISSUE	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000375
G402_SOFT_TISSUE	GPR125--MTCH2	2	0	GPR125	17445	chr4:22425814:-	MTCH2	43720	chr11:47648679:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GPR125->chr4:22346694-22517677:-,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	G402_SOFT_TISSUE	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000375
G402_SOFT_TISSUE	MED13L--RIMS2	2	0	MED13L	6460	chr12:116534474:-	RIMS2	80184	chr8:105257144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	G402_SOFT_TISSUE	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000375
G402_SOFT_TISSUE	STXBP1--NCL	2	0	STXBP1	1176	chr9:130374719:+	NCL	38606	chr2:232321835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	STXBP1->chr9:130374544-130457460:+,syntaxin_binding_protein_1,NCL->chr2:232318242-232348352:-,nucleolin	G402_SOFT_TISSUE	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000375
G402_SOFT_TISSUE	TMCO4--CNPPD1	2	0	TMCO4	17858	chr1:20027261:-	CNPPD1	25468	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	TMCO4->chr1:20008706-20126438:-,transmembrane_and_coiled-coil_domains_4,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	G402_SOFT_TISSUE	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000375
G402_SOFT_TISSUE	RP11-120D5.1--ARHGAP6	1	1	RP11-120D5.1	2349	chrX:11125021:-	ARHGAP6	31904	chrX:11174746:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0091	0.0091	LOCAL_REARRANGEMENT:-:[6978],RP11-120D5.1->chrX:10865996-11129261:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	G402_SOFT_TISSUE	0.33	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000375
SIHA_CERVIX	ATP2A2--IFT81	367	170	ATP2A2	22424	chr12:110783187:+	IFT81	55642	chr12:110655849:+	ONLY_REF_SPLICE	YES	1010	94	0.35	0.85	3.8576	1.7869	YOSHIHARA_TCGA_num_samples[LUAD:2],{Klijn_CCL:Stomach=1,Cervix=1},LOCAL_REARRANGEMENT:+:[61959],ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,IFT81->chr12:110562140-110656602:+,intraflagellar_transport_81	SIHA_CERVIX	0.35	0.85	5.6445	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	CHMP4B--NCOA6	115	48	CHMP4B	1355	chr20:32399464:+	NCOA6	34617	chr20:33303169:-	ONLY_REF_SPLICE	YES	1187	96	0.12	0.63	1.2088	0.5045	{Klijn_CCL:Cervix=1},CHMP4B->charged_multivesicular_body_protein_4B,chr20:32399110-32442172:+,NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	SIHA_CERVIX	0.12	0.63	1.7133	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	XRCC6--CENPM	83	28	XRCC6	1968	chr22:42018090:+	CENPM	18054	chr22:42342500:-	ONLY_REF_SPLICE	YES	1768	229	0.06	0.33	0.8724	0.2943	XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,CENPM->centromere_protein_M,chr22:42334725-42343168:-	SIHA_CERVIX	0.06	0.33	1.1667	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	CDH13--HYDIN	75	16	CDH13	1335	chr16:82660742:+	HYDIN	68910	chr16:71054220:-	ONLY_REF_SPLICE	YES	165	0	0.36	1	0.7883	0.1682	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SIHA_CERVIX	0.36	1	0.9565	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	DDAH1--NEGR1	49	57	DDAH1	5553	chr1:85961849:-	NEGR1	34373	chr1:71873253:-	ONLY_REF_SPLICE	YES	132	0	0.45	1	0.5151	0.5991	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	SIHA_CERVIX	0.45	1	1.1142	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	RIPK1--NQO2	58	19	RIPK1	7996	chr6:3085642:+	NQO2	32460	chr6:3017118:+	ONLY_REF_SPLICE	YES	80	155	0.49	0.33	0.6097	0.1997	GTEx_v2:{count=2;pct=0.02%;dist=Pancreas=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:+:[44229],RIPK1->chr6:3064225-3115421:+,receptor_interacting_serine/threonine_kinase_1,NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+	SIHA_CERVIX	0.33	0.49	0.8094	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	ATP2A2--IFT81	1	170	ATP2A2	22424	chr12:110783187:+	IFT81	54516	chr12:110654513:+	ONLY_REF_SPLICE	NO	1010	97	0.14	0.64	0.0105	1.7869	YOSHIHARA_TCGA_num_samples[LUAD:2],{Klijn_CCL:Stomach=1,Cervix=1},LOCAL_REARRANGEMENT:+:[61959],ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,IFT81->chr12:110562140-110656602:+,intraflagellar_transport_81	SIHA_CERVIX	0.14	0.64	1.7974	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	TMEM104--JUP	43	2	TMEM104	1893	chr17:72773514:+	JUP	20992	chr17:39928114:-	ONLY_REF_SPLICE	YES	83	388	0.35	0.1	0.452	0.021	GTEx&tcga_normals:1/3694=0.03%,TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,JUP->chr17:39775692-39943183:-,junction_plakoglobin	SIHA_CERVIX	0.1	0.35	0.473	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	DDAH1--NEGR1	22	72	DDAH1	10736	chr1:85930426:-	NEGR1	34373	chr1:71873253:-	ONLY_REF_SPLICE	YES	140	0	0.4	1	0.2312	0.7568	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	SIHA_CERVIX	0.4	1	0.988	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	AMBRA1--ARHGAP1	33	13	AMBRA1	17529	chr11:46515158:-	ARHGAP1	35902	chr11:46709810:-	ONLY_REF_SPLICE	YES	53	152	0.46	0.23	0.3469	0.1366	YOSHIHARA_TCGA_num_samples[LUAD:2],{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[82955],AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,ARHGAP1->Rho_GTPase_activating_protein_1,chr11:46698630-46722165:-	SIHA_CERVIX	0.23	0.46	0.4835	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	KIFC3--CNGB1	35	1	KIFC3	4565	chr16:57836282:-	CNGB1	66819	chr16:57918361:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.3679	0.0105	{Klijn_CCL:Kidney=1},LOCAL_REARRANGEMENT:-:[20546],KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3,CNGB1->chr16:57917503-58005020:-,cyclic_nucleotide_gated_channel_beta_1	SIHA_CERVIX	0.97	1	0.3784	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	AGFG1--AC097662.2	28	15	AGFG1	2531	chr2:228356356:+	AC097662.2	31383	chr2:228146505:-	ONLY_REF_SPLICE	YES	44	4	0.49	0.91	0.2943	0.1577	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,AC097662.2->chr2:228085768-228189917:-	SIHA_CERVIX	0.49	0.91	0.452	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	PIEZO1--CBFA2T3	26	3	PIEZO1	1311	chr16:88851309:-	CBFA2T3	38097	chr16:88952550:-	ONLY_REF_SPLICE	YES	44	1	0.4	0.97	0.2733	0.0315	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[89647],PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-	SIHA_CERVIX	0.4	0.97	0.3048	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	CDH13--HYDIN	13	32	CDH13	3588	chr16:82673070:+	HYDIN	68910	chr16:71054220:-	ONLY_REF_SPLICE	YES	196	0	0.19	1	0.1366	0.3364	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SIHA_CERVIX	0.19	1	0.473	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	GCAT--GGA1	17	9	GCAT	1259	chr22:38204170:+	GGA1	15123	chr22:38010197:+	ONLY_REF_SPLICE	YES	164	28	0.14	0.48	0.1787	0.0946	{Klijn_CCL:Cervix=1},GCAT->chr22:38203912-38213183:+,glycine_C-acetyltransferase,GGA1->Oncogene{Bushman},chr22:38004481-38029571:+,golgi-associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_1	SIHA_CERVIX	0.14	0.48	0.2733	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	MAP4K5--LINC00085	16	6	MAP4K5	3887	chr14:50998660:-	LINC00085	41183	chr19:52204911:+	ONLY_REF_SPLICE	YES	66	111	0.25	0.17	0.1682	0.0631	MAP4K5->chr14:50885219-51027844:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_5,LINC00085->chr19:52196593-52215640:+	SIHA_CERVIX	0.17	0.25	0.2313	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	DDAH1--NEGR1	2	57	DDAH1	6990	chr1:85960412:-	NEGR1	34373	chr1:71873253:-	ONLY_REF_SPLICE	YES	106	0	0.36	1	0.021	0.5991	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	SIHA_CERVIX	0.36	1	0.6201	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	RCOR1--ZNF710	14	6	RCOR1	1665	chr14:103059662:+	ZNF710	21264	chr15:90610342:+	ONLY_REF_SPLICE	YES	28	2	0.42	0.91	0.1472	0.0631	RCOR1->REST_corepressor_1,chr14:103058998-103196913:+,ZNF710->chr15:90544624-90625438:+,zinc_finger_protein_710	SIHA_CERVIX	0.42	0.91	0.2103	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	RNF13--RP13-34L8.7	11	7	RNF13	8097	chr3:149589941:+	RP13-34L8.7	20469	chrX:52576582:+	ONLY_REF_SPLICE	YES	70	0	0.2	1	0.1156	0.0736	RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,RP13-34L8.7->chrX:52574163-52576707:+	SIHA_CERVIX	0.2	1	0.1892	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	PSMD5--C5	8	12	PSMD5	1248	chr9:123605015:-	C5	53861	chr9:123726016:-	ONLY_REF_SPLICE	YES	267	6	0.07	0.77	0.0841	0.1261	{Klijn_CCL:Cervix=1},PSMD5->chr9:123577774-123605262:-,proteasome_26S_subunit,_non-ATPase_5,C5->chr9:123714616-123812554:-,complement_component_5	SIHA_CERVIX	0.07	0.77	0.2102	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	DDAH1--NEGR1	2	34	DDAH1	1267	chr1:86043667:-	NEGR1	34373	chr1:71873253:-	ONLY_REF_SPLICE	NO	143	0	0.2	1	0.021	0.3574	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	SIHA_CERVIX	0.2	1	0.3784	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	DDAH1--NEGR1	1	34	DDAH1	3294	chr1:86041515:-	NEGR1	34373	chr1:71873253:-	ONLY_REF_SPLICE	NO	176	0	0.17	1	0.0105	0.3574	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	SIHA_CERVIX	0.17	1	0.3679	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	SLC38A9--CTD-2288O8.1	7	6	SLC38A9	7186	chr5:54993674:-	CTD-2288O8.1	35936	chr5:51981524:-	ONLY_REF_SPLICE	YES	40	0	0.25	1	0.0736	0.0631	SLC38A9->chr5:54921673-55069022:-,solute_carrier_family_38_member_9,CTD-2288O8.1->chr5:51971027-52083860:-	SIHA_CERVIX	0.25	1	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	AGFG1--AC097662.2	5	10	AGFG1	2531	chr2:228356356:+	AC097662.2	32469	chr2:228144294:-	ONLY_REF_SPLICE	YES	44	8	0.25	0.65	0.0526	0.1051	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,AC097662.2->chr2:228085768-228189917:-	SIHA_CERVIX	0.25	0.65	0.1577	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	CDH13--HYDIN	1	21	CDH13	2482	chr16:82671372:+	HYDIN	68910	chr16:71054220:-	ONLY_REF_SPLICE	YES	198	0	0.1	1	0.0105	0.2207	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SIHA_CERVIX	0.1	1	0.2312	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	GCAT--GGA1	3	12	GCAT	2468	chr22:38206164:+	GGA1	15123	chr22:38010197:+	ONLY_REF_SPLICE	YES	119	28	0.11	0.35	0.0315	0.1261	{Klijn_CCL:Cervix=1},GCAT->chr22:38203912-38213183:+,glycine_C-acetyltransferase,GGA1->Oncogene{Bushman},chr22:38004481-38029571:+,golgi-associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_1	SIHA_CERVIX	0.11	0.35	0.1576	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	AGFG1--AC097662.2	4	5	AGFG1	2531	chr2:228356356:+	AC097662.2	33565	chr2:228133485:-	ONLY_REF_SPLICE	YES	44	16	0.17	0.36	0.042	0.0526	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,AC097662.2->chr2:228085768-228189917:-	SIHA_CERVIX	0.17	0.36	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	PVT1--RP11-103H7.1	4	1	PVT1	13955	chr8:129001537:+	RP11-103H7.1	30635	chr8:127504610:+	ONLY_REF_SPLICE	YES	57	3	0.08	0.62	0.042	0.0105	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-103H7.1->chr8:127486434-127504841:+	SIHA_CERVIX	0.08	0.62	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	CTC-228N24.2--CTC-228N24.3	3	2	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	58	1	0.08	0.0315	0.021	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	SIHA_CERVIX	0.08	1	0.0525	TRUE	0	1	0	12	1	TRUE	ACH-000556
SIHA_CERVIX	AC097662.2--AGFG1	3	0	AC097662.2	1034	chr2:228189884:-	AGFG1	25815	chr2:228384664:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	AC097662.2->chr2:228085768-228189917:-,AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+	SIHA_CERVIX	1	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	AGFG1--AC097662.2	1	8	AGFG1	1437	chr2:228337304:+	AC097662.2	31383	chr2:228146505:-	ONLY_REF_SPLICE	YES	33	4	0.21	0.69	0.0105	0.0841	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,AC097662.2->chr2:228085768-228189917:-	SIHA_CERVIX	0.21	0.69	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	CHMP4B--NCOA6	2	0	CHMP4B	1355	chr20:32399464:+	NCOA6	37550	chr20:33285047:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	{Klijn_CCL:Cervix=1},CHMP4B->charged_multivesicular_body_protein_4B,chr20:32399110-32442172:+,NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	SIHA_CERVIX	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	HEATR3--HERC2P4	1	4	HEATR3	12031	chr16:50120262:+	HERC2P4	21911	chr16:32198426:-	ONLY_REF_SPLICE	YES	77	0	0.06	1	0.0105	0.042	HEATR3->HEAT_repeat_containing_3,chr16:50099852-50140298:+,HERC2P4->chr16:32114566-32199434:-,hect_domain_and_RLD_2_pseudogene_4	SIHA_CERVIX	0.06	1	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	WDR76--DGKA	2	0	WDR76	1130	chr15:44119290:+	DGKA	34851	chr12:56345819:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	WDR76->WD_repeat_domain_76,chr15:44119161-44160617:+,DGKA->chr12:56321103-56347811:+,diacylglycerol_kinase_alpha	SIHA_CERVIX	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	AGFG1--TM4SF20	1	1	AGFG1	2531	chr2:228356356:+	TM4SF20	30603	chr2:228235696:-	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.0105	0.0105	LOCAL_INVERSION:+:-:[90157],AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,TM4SF20->chr2:228226872-228246711:-,transmembrane_4_L_six_family_member_20	SIHA_CERVIX	0.04	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000556
PK59_PANCREAS	CCNJ--BLNK	76	33	CCNJ	3280	chr10:97810223:+	BLNK	30741	chr10:97951848:-	ONLY_REF_SPLICE	YES	12	0	0.9	1	0.6806	0.2955	CCNJ->chr10:97803151-97820627:+,cyclin_J,BLNK->B-cell_linker,chr10:97951458-98031344:-	PK59_PANCREAS	0.9	1	0.9761	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	EHMT1--ARRDC1	18	16	EHMT1	7911	chr9:140637980:+	ARRDC1	53812	chr9:140507348:+	ONLY_REF_SPLICE	YES	62	430	0.35	0.07	0.1612	0.1433	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},LOCAL_REARRANGEMENT:+:[3632],EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,ARRDC1->arrestin_domain_containing_1,chr9:140500106-140509812:+	PK59_PANCREAS	0.07	0.35	0.3045	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	ITPR2--CCDC91	16	5	ITPR2	61046	chr12:26540367:-	CCDC91	86928	chr12:28515371:+	ONLY_REF_SPLICE	YES	19	86	0.53	0.2	0.1433	0.0448	{Klijn_CCL:Pancreas=1},ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	PK59_PANCREAS	0.2	0.53	0.1881	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	KIF1B--HLCS	16	0	KIF1B	1074	chr1:10270936:+	HLCS	76178	chr21:38269431:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1433	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase	PK59_PANCREAS	1	1	0.1433	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	TPT1--H19	13	0	TPT1	1319	chr13:45915187:-	H19	11854	chr11:2017003:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1164	0	TPT1->chr13:45911008-45915505:-,tumor_protein,_translationally-controlled_1,H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-	PK59_PANCREAS	1	1	0.1164	TRUE	0	0	0	4	0	TRUE	ACH-000205
PK59_PANCREAS	CTD-3116E22.6--ZNF274	8	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0716	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	PK59_PANCREAS	1	1	0.0716	TRUE	0	0	0	13	0	TRUE	ACH-000205
PK59_PANCREAS	CCNJ--BLNK	6	2	CCNJ	2069	chr10:97804219:+	BLNK	30741	chr10:97951848:-	ONLY_REF_SPLICE	YES	16	0	0.33	1	0.0537	0.0179	CCNJ->chr10:97803151-97820627:+,cyclin_J,BLNK->B-cell_linker,chr10:97951458-98031344:-	PK59_PANCREAS	0.33	1	0.0716	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	C17orf76-AS1--CTD-2354A18.1	4	0	C17orf76-AS1	1593	chr17:16342728:+	CTD-2354A18.1	16095	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	C17orf76-AS1->chr17:16342136-16381992:+,CTD-2354A18.1->chr18:70992176-71017113:+	PK59_PANCREAS	1	1	0.0358	TRUE	0	0	0	3	0	TRUE	ACH-000205
PK59_PANCREAS	ITPR2--CCDC91	3	2	ITPR2	61046	chr12:26540367:-	CCDC91	88006	chr12:28544237:+	ONLY_REF_SPLICE	YES	19	103	0.21	0.05	0.0269	0.0179	{Klijn_CCL:Pancreas=1},ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	PK59_PANCREAS	0.05	0.21	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	RP11-467H10.2--TCF7L2	3	1	RP11-467H10.2	1058	chr7:76673095:+	TCF7L2	13405	chr10:114900943:+	ONLY_REF_SPLICE	YES	0	67	1	0.06	0.0269	0.009	RP11-467H10.2->chr7:76673038-76827943:+,TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2	PK59_PANCREAS	0.06	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	EP300--RANGAP1	2	0	EP300	32070	chr22:41569788:+	RANGAP1	43685	chr22:41677086:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	LOCAL_INVERSION:+:-:[65534],EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+,RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-	PK59_PANCREAS	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	PCBP2--C12orf10	2	0	PCBP2	7833	chr12:53849785:+	C12orf10	30096	chr12:53700464:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,C12orf10->chr12:53693470-53700961:+,chromosome_12_open_reading_frame_10	PK59_PANCREAS	1	1	0.0179	TRUE	0	1	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	PSMD4--SNHG12	2	0	PSMD4	5133	chr1:151236504:+	SNHG12	14587	chr1:28906493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	PSMD4->chr1:151227179-151239955:+,proteasome_26S_subunit,_non-ATPase_4,SNHG12->chr1:28905050-28909495:-,small_nucleolar_RNA_host_gene_12	PK59_PANCREAS	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	PVT1--FAM49B	2	0	PVT1	1202	chr8:128806980:+	FAM49B	42030	chr8:130883742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	PK59_PANCREAS	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	RP5-1158E12.3--CCDC91	2	0	RP5-1158E12.3	3112	chrX:45708809:-	CCDC91	23294	chr12:28458582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	RP5-1158E12.3->chrX:45707328-45710920:-,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	PK59_PANCREAS	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	VPS36--RB1	2	0	VPS36	7499	chr13:53007797:-	RB1	40869	chr13:49027129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	VPS36->chr13:52986737-53024763:-,vacuolar_protein_sorting_36_homolog,RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1	PK59_PANCREAS	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000205
SNU520_STOMACH	ANKRD11--EXD3	5	0	ANKRD11	1317	chr16:89556653:-	EXD3	66202	chr9:140204152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3	SNU520_STOMACH	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000908
SNU520_STOMACH	ACBD6--ATP1A1	2	0	ACBD6	7351	chr1:180366651:-	ATP1A1	21361	chr1:116926636:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+	SNU520_STOMACH	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000908
SNU520_STOMACH	ARMC4P1--RP11-748L13.2	2	0	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	SNU520_STOMACH	1	1	0.0188	TRUE	1	34	11	8	34	TRUE	ACH-000908
SNU520_STOMACH	ONECUT3--CIRBP	2	0	ONECUT3	3482	chr19:1754853:+	CIRBP	21395	chr19:1270927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ONECUT3->chr19:1752372-1780987:+,one_cut_homeobox_3,CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	SNU520_STOMACH	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000908
TTC642_SOFT_TISSUE	CTC-340A15.2--CTC-535M15.2	3	3	CTC-340A15.2	25965	chr5:164434418:+	CTC-535M15.2	32673	chr5:165204982:+	ONLY_REF_SPLICE	YES	22	0	0.21	1	0.0501	0.0501	CTC-340A15.2->chr5:163723702-164598649:+,CTC-535M15.2->chr5:164776036-165205694:+	TTC642_SOFT_TISSUE	0.21	1	0.1002	TRUE	0	0	0	2	0	TRUE	ACH-001212
TTC642_SOFT_TISSUE	CTC-340A15.2--CTC-535M15.2	2	0	CTC-340A15.2	1501	chr5:163724202:+	CTC-535M15.2	32673	chr5:165204982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	CTC-340A15.2->chr5:163723702-164598649:+,CTC-535M15.2->chr5:164776036-165205694:+	TTC642_SOFT_TISSUE	1	1	0.0334	TRUE	0	0	0	3	0	TRUE	ACH-001212
TTC642_SOFT_TISSUE	CTC-340A15.2--CTC-535M15.2	1	3	CTC-340A15.2	20516	chr5:164149813:+	CTC-535M15.2	32673	chr5:165204982:+	ONLY_REF_SPLICE	NO	33	0	0.11	1	0.0167	0.0501	CTC-340A15.2->chr5:163723702-164598649:+,CTC-535M15.2->chr5:164776036-165205694:+	TTC642_SOFT_TISSUE	0.11	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-001212
SNU182_LIVER	USP43--AHSP	157	110	USP43	2439	chr17:9549453:+	AHSP	23400	chr16:31539457:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.376	0.9641	USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43,AHSP->alpha_hemoglobin_stabilizing_protein,chr16:31539185-31540124:+	SNU182_LIVER	1	1	2.3401	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	USP43--AHSP	113	104	USP43	2439	chr17:9549453:+	AHSP	23404	chr16:31539461:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9903	0.9115	USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43,AHSP->alpha_hemoglobin_stabilizing_protein,chr16:31539185-31540124:+	SNU182_LIVER	1	1	1.9018	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	GNB1L--SEPT5	49	15	GNB1L	5537	chr22:19794182:-	SEPT5	20203	chr22:19707125:+	ONLY_REF_SPLICE	YES	95	258	0.4	0.2	0.4294	0.1315	{Klijn_CCL:Liver=1},LOCAL_INVERSION:-:+:[58452],GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-,SEPT5->Oncogene{Bushman},chr22:19701987-19712295:+,septin_5	SNU182_LIVER	0.2	0.4	0.5609	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	RNF115--ANKRD34A	41	17	RNF115	1306	chr1:145611341:+	ANKRD34A	24014	chr1:145472122:+	ONLY_REF_SPLICE	YES	84	1	0.41	0.98	0.3593	0.149	RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,ANKRD34A->ankyrin_repeat_domain_34A,chr1:145470508-145475646:+	SNU182_LIVER	0.41	0.98	0.5083	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	MAVS--CDC25B	45	0	MAVS	1064	chr20:3827550:+	CDC25B	14051	chr20:3767745:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3944	0	LOCAL_REARRANGEMENT:+:[40725],MAVS->chr20:3827487-3849280:+,mitochondrial_antiviral_signaling_protein,CDC25B->Oncogene{Bushman},cell_division_cycle_25B,chr20:3767578-3786762:+	SNU182_LIVER	1	1	0.3944	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	GREB1L--TULP3	24	9	GREB1L	8901	chr18:18983955:+	TULP3	50038	chr12:3031428:+	ONLY_REF_SPLICE	YES	18	50	0.65	0.4	0.2103	0.0789	{Klijn_CCL:Liver=1},GREB1L->chr18:18822203-19105378:+,growth_regulation_by_estrogen_in_breast_cancer-like,TULP3->chr12:2986389-3050306:+,tubby_like_protein_3	SNU182_LIVER	0.4	0.65	0.2892	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	PRICKLE1--RP11-547C5.2	22	6	PRICKLE1	6733	chr12:42864048:-	RP11-547C5.2	20073	chr12:43373203:-	ONLY_REF_SPLICE	YES	72	0	0.28	1	0.1928	0.0526	PRICKLE1->chr12:42852140-42984157:-,prickle_planar_cell_polarity_protein_1,RP11-547C5.2->chr12:43373057-43390289:-	SNU182_LIVER	0.28	1	0.2454	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	USP43--AHSP	17	7	USP43	1645	chr17:9548659:+	AHSP	23400	chr16:31539457:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.149	0.0613	USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43,AHSP->alpha_hemoglobin_stabilizing_protein,chr16:31539185-31540124:+	SNU182_LIVER	1	1	0.2103	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	CCDC57--CSNK1D	15	2	CCDC57	7669	chr17:80151632:-	CSNK1D	49497	chr17:80211120:-	ONLY_REF_SPLICE	YES	11	293	0.61	0.05	0.1315	0.0175	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[26193],CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	SNU182_LIVER	0.05	0.61	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	PRICKLE1--RP11-547C5.2	12	5	PRICKLE1	1891	chr12:42983267:-	RP11-547C5.2	18972	chr12:43383650:-	ONLY_REF_SPLICE	YES	30	0	0.36	1	0.1052	0.0438	PRICKLE1->chr12:42852140-42984157:-,prickle_planar_cell_polarity_protein_1,RP11-547C5.2->chr12:43373057-43390289:-	SNU182_LIVER	0.36	1	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	SKP2--TTC23L	12	4	SKP2	9003	chr5:36177394:+	TTC23L	18112	chr5:34845592:+	ONLY_REF_SPLICE	YES	133	1	0.11	0.94	0.1052	0.0351	SKP2->Oncogene{Bushman},S-phase_kinase-associated_protein_2,_E3_ubiquitin_protein_ligase,chr5:36152091-36184421:+,TTC23L->chr5:34838938-34899561:+,tetratricopeptide_repeat_domain_23_like	SNU182_LIVER	0.11	0.94	0.1403	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	RNF115--ANKRD34A	9	14	RNF115	1306	chr1:145611341:+	ANKRD34A	24038	chr1:145472146:+	INCL_NON_REF_SPLICE	YES	84	1	0.21	0.96	0.0789	0.1227	RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,ANKRD34A->ankyrin_repeat_domain_34A,chr1:145470508-145475646:+	SNU182_LIVER	0.21	0.96	0.2016	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	COL3A1--COL4A1	12	0	COL3A1	16779	chr2:189864295:+	COL4A1	64304	chr13:110822055:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1052	0	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SNU182_LIVER	1	1	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	ZZZ3--USP33	4	19	ZZZ3	1158	chr1:78148947:-	USP33	28168	chr1:78207433:-	ONLY_REF_SPLICE	YES	26	89	0.47	0.21	0.0351	0.1665	LOCAL_REARRANGEMENT:-:[12568],ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	SNU182_LIVER	0.21	0.47	0.2016	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	GREB1L--TULP3	5	10	GREB1L	8901	chr18:18983955:+	TULP3	48878	chr12:3029929:+	ONLY_REF_SPLICE	YES	18	24	0.45	0.38	0.0438	0.0876	{Klijn_CCL:Liver=1},GREB1L->chr18:18822203-19105378:+,growth_regulation_by_estrogen_in_breast_cancer-like,TULP3->chr12:2986389-3050306:+,tubby_like_protein_3	SNU182_LIVER	0.38	0.45	0.1314	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	CCDC88A--PNPT1	6	3	CCDC88A	23223	chr2:55559702:-	PNPT1	63632	chr2:55883355:-	ONLY_REF_SPLICE	YES	41	209	0.18	0.04	0.0526	0.0263	CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,PNPT1->chr2:55861400-55921045:-,polyribonucleotide_nucleotidyltransferase_1	SNU182_LIVER	0.04	0.18	0.0789	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	CCDC88A--PNPT1	6	3	CCDC88A	23223	chr2:55559702:-	PNPT1	63481	chr2:55883506:-	ONLY_REF_SPLICE	YES	41	217	0.18	0.04	0.0526	0.0263	CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,PNPT1->chr2:55861400-55921045:-,polyribonucleotide_nucleotidyltransferase_1	SNU182_LIVER	0.04	0.18	0.0789	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	COL3A1--COL4A1	5	0	COL3A1	20470	chr2:189868487:+	COL4A1	66320	chr13:110818641:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SNU182_LIVER	1	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	RACGAP1--LIMA1	5	0	RACGAP1	3498	chr12:50419181:-	LIMA1	35156	chr12:50599851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0438	0	RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-,LIMA1->LIM_domain_and_actin_binding_1,chr12:50569571-50677329:-	SNU182_LIVER	1	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	ZDHHC8--LZTR1	4	0	ZDHHC8	4031	chr22:20127415:+	LZTR1	28718	chr22:21350985:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},ZDHHC8->chr22:20116979-20135530:+,zinc_finger_DHHC-type_containing_8,LZTR1->ArcherDX_panel,FoundationOne_panel,chr22:21333751-21353327:+,leucine-zipper-like_transcription_regulator_1	SNU182_LIVER	1	1	0.0351	TRUE	0	5	0	2	0	TRUE	ACH-000483
SNU182_LIVER	CTB-113P19.1--FTL	3	2	CTB-113P19.1	4742	chr5:151066491:+	FTL	9972	chr19:49468589:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0.0175	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	SNU182_LIVER	1	1	0.0438	TRUE	0	2	0	13	2	TRUE	ACH-000483
SNU182_LIVER	CTGF--RPS28	3	0	CTGF	1152	chr6:132272362:-	RPS28	7541	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	GTEx&tcga_normals:1/3694=0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU182_LIVER	1	1	0.0263	TRUE	0	0	0	5	0	TRUE	ACH-000483
SNU182_LIVER	RACGAP1--LIMA1	3	0	RACGAP1	3568	chr12:50419111:-	LIMA1	35156	chr12:50599851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-,LIMA1->LIM_domain_and_actin_binding_1,chr12:50569571-50677329:-	SNU182_LIVER	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	TUBA1C--ACTB	3	0	TUBA1C	7613	chr12:49658934:+	ACTB	17872	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU182_LIVER	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	C17orf76-AS1--TXNDC15	2	0	C17orf76-AS1	1593	chr17:16342728:+	TXNDC15	15796	chr5:134223385:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	C17orf76-AS1->chr17:16342136-16381992:+,TXNDC15->chr5:134209493-134237215:+,thioredoxin_domain_containing_15	SNU182_LIVER	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	CALD1--BPGM	2	0	CALD1	3555	chr7:134464500:+	BPGM	39851	chr7:134346199:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	LOCAL_REARRANGEMENT:+:[64438],CALD1->caldesmon_1,chr7:134429003-134655479:+,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	SNU182_LIVER	1	1	0.0175	TRUE	0	0	0	2	0	TRUE	ACH-000483
SNU182_LIVER	FAT3--RSF1	2	0	FAT3	5624	chr11:92258114:+	RSF1	52425	chr11:77475734:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	FAT3->FAT_atypical_cadherin_3,chr11:92085262-92629618:+,RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1	SNU182_LIVER	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	TVP23C--UBB	2	0	TVP23C	6853	chr17:15449099:-	UBB	21178	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),UBB->chr17:16284112-16286059:+,ubiquitin_B	SNU182_LIVER	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	TXNIP--IPO5	2	0	TXNIP	1584	chr1:145439052:+	IPO5	39774	chr13:98671835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,IPO5->chr13:98605912-98676551:+,importin_5	SNU182_LIVER	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000483
EFO27_OVARY	IQGAP1--CTD-2315E11.1	43	6	IQGAP1	3814	chr15:90969498:+	CTD-2315E11.1	46960	chr15:90676629:+	ONLY_REF_SPLICE	YES	206	0	0.19	1	0.5951	0.083	IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,CTD-2315E11.1->chr15:90645881-90676674:+	EFO27_OVARY	0.19	1	0.6781	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	CDC73--RGS13	4	4	CDC73	2651	chr1:193094347:+	RGS13	24766	chr1:192605374:+	INCL_NON_REF_SPLICE	YES	109	0	0.07	1	0.0554	0.0554	CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+,RGS13->chr1:192605275-192629390:+,regulator_of_G-protein_signaling_13	EFO27_OVARY	0.07	1	0.1108	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	TMEM161A--MEF2B	3	0	TMEM161A	5583	chr19:19240965:-	MEF2B	20108	chr19:19261573:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0415	0	LOCAL_REARRANGEMENT:-:[7055],TMEM161A->chr19:19229978-19249322:-,transmembrane_protein_161A,MEF2B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:19256377-19303400:-,myocyte_enhancer_factor_2B	EFO27_OVARY	1	1	0.0415	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	CENPL--GAS5	2	1	CENPL	1795	chr1:173793064:-	GAS5	15532	chr1:173836181:-	ONLY_REF_SPLICE	YES	34	10	0.08	0.23	0.0277	0.0138	LOCAL_REARRANGEMENT:-:[39180],CENPL->centromere_protein_L,chr1:173768688-173793858:-,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	EFO27_OVARY	0.08	0.23	0.0415	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	ATP5B--ANKRD29	2	0	ATP5B	3612	chr12:57037187:-	ANKRD29	14987	chr18:21226251:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,ANKRD29->ankyrin_repeat_domain_29,chr18:21178890-21242849:-	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	CELF2--EXOC2	2	0	CELF2	2379	chr10:11060126:+	EXOC2	51804	chr6:532610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	CELF2->CUGBP,_Elav-like_family_member_2,chr10:11047259-11378674:+,EXOC2->chr6:485133-693117:-,exocyst_complex_component_2	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	CERS5--LIMA1	2	0	CERS5	1405	chr12:50560884:-	LIMA1	38181	chr12:50575820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	LOCAL_REARRANGEMENT:-:[8283],CERS5->ceramide_synthase_5,chr12:50523575-50561288:-,LIMA1->LIM_domain_and_actin_binding_1,chr12:50569571-50677329:-	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	CTD-2021J15.1--ALG11	2	0	CTD-2021J15.1	1094	chr3:98621361:+	ALG11	7769	chr13:52593049:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	CTD-2021J15.1->chr3:98621268-98737406:+,ALG11->ALG11,_alpha-1,2-mannosyltransferase,chr13:52586534-52603800:+	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	DMWD--DDX39B	2	0	DMWD	2670	chr19:46294163:-	DDX39B	22492	chr6:31499182:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	DMWD->chr19:46286205-46296060:-,dystrophia_myotonica,_WD_repeat_containing,DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	FAM204A--SEC23IP	2	0	FAM204A	2844	chr10:120095694:-	SEC23IP	30013	chr10:121685548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	FAM204A->chr10:120065401-120101840:-,family_with_sequence_similarity_204_member_A,SEC23IP->SEC23_interacting_protein,chr10:121652223-121702014:+	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	IFT140--HN1L	2	0	IFT140	21093	chr16:1607936:-	HN1L	40011	chr16:1735440:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	LOCAL_INVERSION:-:+:[66146],IFT140->chr16:1560428-1662111:-,intraflagellar_transport_140,HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like	EFO27_OVARY	1	1	0.0277	TRUE	0	2	0	2	0	TRUE	ACH-000936
EFO27_OVARY	MRPL18--SURF2	2	0	MRPL18	2315	chr6:160212158:+	SURF2	8625	chr9:136224587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	MRPL18->chr6:160210844-160219468:+,mitochondrial_ribosomal_protein_L18,SURF2->chr9:136223428-136228045:+,surfeit_2	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	PCNX--UBL4A	2	0	PCNX	34724	chr14:71524441:+	UBL4A	58507	chrX:153714672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	PCNX->chr14:71374122-71582099:+,UBL4A->chrX:153712056-153715009:-,ubiquitin_like_4A	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	RC3H2--GOLT1B	2	0	RC3H2	3064	chr9:125659558:-	GOLT1B	33106	chr12:21660878:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	RC3H2->chr9:125606835-125667620:-,ring_finger_and_CCCH-type_domains_2,GOLT1B->chr12:21654715-21671342:+,golgi_transport_1B	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	RP11-867G23.8--FUT11	1	1	RP11-867G23.8	2471	chr11:66116941:+	FUT11	16378	chr10:75538586:+	ONLY_REF_SPLICE	YES	3	22	0.4	0.08	0.0138	0.0138	RP11-867G23.8->chr11:66115421-66132275:+,FUT11->chr10:75532049-75540009:+,fucosyltransferase_11	EFO27_OVARY	0.08	0.4	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000936
WM1799_SKIN	PRKD1--STXBP6	224	66	PRKD1	5311	chr14:30194742:-	STXBP6	38730	chr14:25444056:-	ONLY_REF_SPLICE	YES	9	27	0.97	0.91	2.1087	0.6213	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,STXBP6->chr14:25278862-25519503:-,syntaxin_binding_protein_6	WM1799_SKIN	0.91	0.97	2.73	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	PYROXD2--HPSE2	89	57	PYROXD2	5918	chr10:100167339:-	HPSE2	30736	chr10:100249953:-	ONLY_REF_SPLICE	YES	34	0	0.81	1	0.8378	0.5366	LOCAL_REARRANGEMENT:-:[43934],PYROXD2->chr10:100143322-100174941:-,pyridine_nucleotide-disulphide_oxidoreductase_domain_2,HPSE2->chr10:100218875-100995619:-,heparanase_2_(inactive)	WM1799_SKIN	0.81	1	1.3744	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	RP11-159G9.5--HTR1F	37	37	RP11-159G9.5	4596	chr3:88175419:+	HTR1F	12334	chr3:88039858:+	INCL_NON_REF_SPLICE	YES	29	0	0.72	1	0.3483	0.3483	LOCAL_REARRANGEMENT:+:[65505],RP11-159G9.5->chr3:88108424-88188123:+,HTR1F->5-hydroxytryptamine_receptor_1F,chr3:88039846-88042919:+	WM1799_SKIN	0.72	1	0.6966	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	RP11-159G9.5--HTR1F	21	20	RP11-159G9.5	3460	chr3:88162346:+	HTR1F	12334	chr3:88039858:+	INCL_NON_REF_SPLICE	YES	79	0	0.34	1	0.1977	0.1883	LOCAL_REARRANGEMENT:+:[65505],RP11-159G9.5->chr3:88108424-88188123:+,HTR1F->5-hydroxytryptamine_receptor_1F,chr3:88039846-88042919:+	WM1799_SKIN	0.34	1	0.386	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	PRKD1--STXBP6	17	14	PRKD1	5311	chr14:30194742:-	STXBP6	41078	chr14:25326363:-	ONLY_REF_SPLICE	YES	9	76	0.78	0.29	0.16	0.1318	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,STXBP6->chr14:25278862-25519503:-,syntaxin_binding_protein_6	WM1799_SKIN	0.29	0.78	0.2918	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	KMT2C--CTBP2P1	14	2	KMT2C	8616	chr7:151970790:-	CTBP2P1	74892	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	27	0	0.37	1	0.1318	0.0188	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	WM1799_SKIN	0.37	1	0.1506	TRUE	0	1	0	4	1	TRUE	ACH-000661
WM1799_SKIN	CD82--GLYAT	9	1	CD82	2222	chr11:44587286:+	GLYAT	21841	chr11:58491984:-	ONLY_REF_SPLICE	YES	35	0	0.22	1	0.0847	0.0094	CD82->CD82_molecule,Oncogene{Bushman},chr11:44585977-44641913:+,GLYAT->chr11:58407899-58499447:-,glycine-N-acyltransferase	WM1799_SKIN	0.22	1	0.0941	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	PYROXD2--HPSE2	1	14	PYROXD2	1176	chr10:100174766:-	HPSE2	30736	chr10:100249953:-	ONLY_REF_SPLICE	NO	81	0	0.16	1	0.0094	0.1318	LOCAL_REARRANGEMENT:-:[43934],PYROXD2->chr10:100143322-100174941:-,pyridine_nucleotide-disulphide_oxidoreductase_domain_2,HPSE2->chr10:100218875-100995619:-,heparanase_2_(inactive)	WM1799_SKIN	0.16	1	0.1412	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	RP11-460N16.1--MITF	3	5	RP11-460N16.1	3607	chr3:70062823:+	MITF	17567	chr3:69928285:+	ONLY_REF_SPLICE	YES	11	17	0.42	0.32	0.0282	0.0471	LOCAL_REARRANGEMENT:+:[31240],RP11-460N16.1->chr3:70048728-70064469:+,MITF->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:69788586-70017488:+,microphthalmia-associated_transcription_factor	WM1799_SKIN	0.32	0.42	0.0753	TRUE	0	1	0	1	1	TRUE	ACH-000661
WM1799_SKIN	STAG3L1--WBSCR28	2	5	STAG3L1	1231	chr7:74988678:+	WBSCR28	15941	chr7:73279323:+	ONLY_REF_SPLICE	YES	71	1	0.09	0.88	0.0188	0.0471	STAG3L1->chr7:74988448-75024657:+,stromal_antigen_3-like_1_(pseudogene),WBSCR28->Williams-Beuren_syndrome_chromosome_region_28,chr7:73275489-73280223:+	WM1799_SKIN	0.09	0.88	0.0659	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	ADAM23--PARD3B	3	0	ADAM23	3837	chr2:207346032:+	PARD3B	67904	chr2:206480180:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ADAM23->ADAM_metallopeptidase_domain_23,Oncogene{Bushman},chr2:207308263-207485851:+,PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta	WM1799_SKIN	1	1	0.0282	TRUE	0	0	0	2	0	TRUE	ACH-000661
WM1799_SKIN	ALS2--FAM169A	2	0	ALS2	1313	chr2:202645600:-	FAM169A	49780	chr5:74137504:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ALS2->ALS2,_alsin_Rho_guanine_nucleotide_exchange_factor,chr2:202565277-202645912:-,FAM169A->chr5:74073399-74162776:-,family_with_sequence_similarity_169_member_A	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	B3GALNT2--DAG1	2	0	B3GALNT2	3612	chr1:235657991:-	DAG1	29785	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	B3GALNT2->beta-1,3-N-acetylgalactosaminyltransferase_2,chr1:235613238-235667781:-,DAG1->chr3:49506146-49573048:+,dystroglycan_1	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	FRYL--CORO1C	2	0	FRYL	1245	chr4:48782095:-	CORO1C	87149	chr12:109095099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	IER2--USP22	2	0	IER2	1138	chr19:13261366:+	USP22	10614	chr17:20931987:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	IER2->Oncogene{Bushman},chr19:13261229-13265722:+,immediate_early_response_2,USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	KRBA2--PPP1R7	2	0	KRBA2	1812	chr17:8279218:-	PPP1R7	21825	chr2:242122062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	KRBA2->KRAB-A_domain_containing_2,chr17:8271955-8280029:-,PPP1R7->chr2:242088991-242123067:+,protein_phosphatase_1_regulatory_subunit_7	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	LRCH1--ROCK1	2	0	LRCH1	6257	chr13:47255981:+	ROCK1	38964	chr18:18622196:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	LRCH1->chr13:47127303-47327175:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_1,ROCK1->Rho_associated_coiled-coil_containing_protein_kinase_1,chr18:18526867-18691812:-	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	MED30--EIF3H	2	0	MED30	1341	chr8:118533292:+	EIF3H	17749	chr8:117671219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	POLR3F--MFN1	2	0	POLR3F	8364	chr20:18462454:+	MFN1	26217	chr3:179096129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	POLR3F->chr20:18447771-18465287:+,polymerase_(RNA)_III_subunit_F,MFN1->chr3:179065480-179112719:+,mitofusin_1	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	SCAMP1--LHFPL2	2	0	SCAMP1	1214	chr5:77656552:+	LHFPL2	31828	chr5:77860694:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	LOCAL_INVERSION:+:-:[4476],SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1,LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	ZNF738--RAB23	2	0	ZNF738	3429	chr19:21544660:+	RAB23	15336	chr6:57075243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,RAB23->RAB23,_member_RAS_oncogene_family,chr6:57053607-57087078:-	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
8MGBA_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	388	236	QKI	9463	chr6:163899928:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	240	27	0.72	0.96	4.1424	2.5196	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.72	0.96	6.662	TRUE	0	1	0	3	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	TMED9--RGS14	276	175	TMED9	1518	chr5:177019676:+	RGS14	9201	chr5:176792964:+	ONLY_REF_SPLICE	YES	2430	127	0.16	0.78	2.9467	1.8684	TMED9->chr5:177019159-177023125:+,transmembrane_p24_trafficking_protein_9,RGS14->chr5:176784838-176799602:+,regulator_of_G-protein_signaling_14	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.16	0.78	4.8151	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EZH1--BRCA1	170	58	EZH1	9261	chr17:40872291:-	BRCA1	44339	chr17:41228631:-	ONLY_REF_SPLICE	YES	31	58	0.88	0.8	1.815	0.6192	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.8	0.88	2.4342	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	111	281	QKI	9463	chr6:163899928:+	PACRG	43367	chr6:163733811:+	ONLY_REF_SPLICE	YES	240	0	0.62	1	1.1851	3.0001	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.62	1	4.1852	TRUE	0	1	0	2	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008079.9	165	16	AP003900.6	1122	chr21:11169841:+	AC008079.9	9069	chr22:18682508:-	ONLY_REF_SPLICE	YES	2	0	0.99	1	1.7616	0.1708	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.9324	TRUE	0	0	0	2	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EIF4H--EXTL3	136	66	EIF4H	4732	chr7:73604248:+	EXTL3	24382	chr8:28573102:+	ONLY_REF_SPLICE	YES	707	34	0.22	0.86	1.452	0.7046	EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H,EXTL3->chr8:28457986-28613116:+,exostosin_like_glycosyltransferase_3	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.22	0.86	2.1566	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	TMED9--RGS14	68	192	TMED9	1518	chr5:177019676:+	RGS14	7977	chr5:176784847:+	INCL_NON_REF_SPLICE	YES	2430	0	0.1	1	0.726	2.0499	TMED9->chr5:177019159-177023125:+,transmembrane_p24_trafficking_protein_9,RGS14->chr5:176784838-176799602:+,regulator_of_G-protein_signaling_14	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.1	1	2.7759	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	7	281	QKI	9463	chr6:163899928:+	PACRG	43363	chr6:163733807:+	INCL_NON_REF_SPLICE	YES	240	0	0.55	1	0.0747	3.0001	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.55	1	3.0748	TRUE	0	1	0	2	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	1	281	QKI	9463	chr6:163899928:+	PACRG	42138	chr6:163665972:+	ONLY_REF_SPLICE	YES	240	0	0.54	1	0.0107	3.0001	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.54	1	3.0108	TRUE	0	1	0	1	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EZH1--BRCA1	18	57	EZH1	9261	chr17:40872291:-	BRCA1	44342	chr17:41228628:-	ONLY_REF_SPLICE	YES	31	55	0.71	0.58	0.1922	0.6086	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.58	0.71	0.8008	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	ADRBK1--KDM2A	22	28	ADRBK1	11413	chr11:67052797:+	KDM2A	29226	chr11:66995517:+	INCL_NON_REF_SPLICE	YES	352	102	0.12	0.33	0.2349	0.2989	LOCAL_REARRANGEMENT:+:[8323],ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.12	0.33	0.5338	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EIF4H--EXTL3	11	71	EIF4H	5120	chr7:73604636:+	EXTL3	24382	chr8:28573102:+	ONLY_REF_SPLICE	YES	737	34	0.1	0.71	0.1174	0.758	EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H,EXTL3->chr8:28457986-28613116:+,exostosin_like_glycosyltransferase_3	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.1	0.71	0.8754	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	ADRBK1--KDM2A	25	10	ADRBK1	11275	chr11:67052659:+	KDM2A	30344	chr11:66999037:+	ONLY_REF_SPLICE	YES	227	78	0.13	0.31	0.2669	0.1068	LOCAL_REARRANGEMENT:+:[8323],ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.13	0.31	0.3737	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008079.9	18	27	AP003900.6	3299	chr21:11174002:+	AC008079.9	9069	chr22:18682508:-	ONLY_REF_SPLICE	YES	7	0	0.87	1	0.1922	0.2883	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.87	1	0.4805	TRUE	0	1	0	3	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	AUP1--EVA1A	20	16	AUP1	4222	chr2:74753845:-	EVA1A	15512	chr2:75720735:-	INCL_NON_REF_SPLICE	YES	0	141	1	0.2	0.2135	0.1708	AUP1->ancient_ubiquitous_protein_1,chr2:74753772-74757066:-,EVA1A->chr2:75696428-75796848:-,eva-1_homolog_A,_regulator_of_programmed_cell_death	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.3843	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	LRTOMT--RNF121	22	3	LRTOMT	1550	chr11:71791931:+	RNF121	28399	chr11:71705765:+	ONLY_REF_SPLICE	YES	9	210	0.74	0.11	0.2349	0.032	LOCAL_REARRANGEMENT:+:[82739],LRTOMT->chr11:71791382-71821828:+,leucine_rich_transmembrane_and_O-methyltransferase_domain_containing,RNF121->chr11:71639747-71708643:+,ring_finger_protein_121	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.11	0.74	0.2669	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	3	70	QKI	7175	chr6:163876453:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	225	27	0.24	0.73	0.032	0.7473	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.24	0.73	0.7793	TRUE	0	0	0	3	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	TRIM23--AC003002.6	15	11	TRIM23	7459	chr5:64906688:-	AC003002.6	23611	chr19:57922248:+	ONLY_REF_SPLICE	YES	58	0	0.31	1	0.1601	0.1174	TRIM23->chr5:64885507-64921802:-,tripartite_motif_containing_23,AC003002.6->chr19:57901252-57931362:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.2775	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EZH1--BRCA1	1	60	EZH1	10364	chr17:40871123:-	BRCA1	44339	chr17:41228631:-	ONLY_REF_SPLICE	YES	46	58	0.57	0.51	0.0107	0.6406	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.51	0.57	0.6513	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EZH1--BRCA1	1	59	EZH1	10364	chr17:40871123:-	BRCA1	44342	chr17:41228628:-	ONLY_REF_SPLICE	NO	46	55	0.57	0.52	0.0107	0.6299	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.52	0.57	0.6406	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	USP4--AMT	11	15	USP4	5189	chr3:49363138:-	AMT	35340	chr3:49456584:-	INCL_NON_REF_SPLICE	YES	207	26	0.11	0.5	0.1174	0.1601	LOCAL_REARRANGEMENT:-:[76066],USP4->Oncogene{Bushman},chr3:49315264-49378145:-,ubiquitin_specific_peptidase_4,AMT->aminomethyltransferase,chr3:49454211-49460186:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.11	0.5	0.2775	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	SBNO2--FGF22	11	2	SBNO2	6949	chr19:1147308:-	FGF22	30811	chr19:643235:+	ONLY_REF_SPLICE	YES	161	0	0.07	1	0.1174	0.0214	SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),FGF22->chr19:639879-643703:+,fibroblast_growth_factor_22	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.1388	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	TRPM2--PKNOX1	10	6	TRPM2	22884	chr21:45833957:+	PKNOX1	42299	chr21:44427601:+	ONLY_REF_SPLICE	YES	7	74	0.7	0.18	0.1068	0.0641	TRPM2->chr21:45770046-45862964:+,transient_receptor_potential_cation_channel_subfamily_M_member_2,PKNOX1->Oncogene{Bushman},PBX/knotted_1_homeobox_1,chr21:44394620-44453691:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.18	0.7	0.1709	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EZH1--BRCA1	3	24	EZH1	10364	chr17:40871123:-	BRCA1	45466	chr17:41226538:-	ONLY_REF_SPLICE	YES	46	51	0.37	0.35	0.032	0.2562	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.35	0.37	0.2882	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	USP4--AMT	7	4	USP4	5175	chr3:49363152:-	AMT	36518	chr3:49455406:-	ONLY_REF_SPLICE	YES	201	26	0.05	0.3	0.0747	0.0427	LOCAL_REARRANGEMENT:-:[76066],USP4->Oncogene{Bushman},chr3:49315264-49378145:-,ubiquitin_specific_peptidase_4,AMT->aminomethyltransferase,chr3:49454211-49460186:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.05	0.3	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008079.9	2	23	AP003900.6	3299	chr21:11174002:+	AC008079.9	9596	chr22:18681981:-	ONLY_REF_SPLICE	YES	7	2	0.78	0.93	0.0214	0.2456	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.78	0.93	0.267	TRUE	0	1	0	3	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008079.9	2	20	AP003900.6	2187	chr21:11172043:+	AC008079.9	9069	chr22:18682508:-	ONLY_REF_SPLICE	YES	8	0	0.73	1	0.0214	0.2135	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.73	1	0.2349	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RCC1--TAF12	5	0	RCC1	2175	chr1:28834672:+	TAF12	21394	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0534	0	LOCAL_INVERSION:+:-:[50023],RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0534	TRUE	0	1	0	2	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	ZNF567--EID2B	4	4	ZNF567	6932	chr19:37203769:+	EID2B	17422	chr19:40022153:-	ONLY_REF_SPLICE	YES	18	6	0.31	0.57	0.0427	0.0427	ZNF567->chr19:37178514-37218603:+,zinc_finger_protein_567,EID2B->EP300_interacting_inhibitor_of_differentiation_2B,chr19:40021630-40023494:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.31	0.57	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	LUZP1--CTB-32O4.2	4	2	LUZP1	2577	chr1:23495259:-	CTB-32O4.2	20994	chr19:29706188:+	ONLY_REF_SPLICE	YES	3	6	0.67	0.5	0.0427	0.0214	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,CTB-32O4.2->chr19:29704142-29706722:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.5	0.67	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RILP--SMYD4	2	1	RILP	1878	chr17:1552494:-	SMYD4	12591	chr17:1715409:-	ONLY_REF_SPLICE	YES	10	36	0.23	0.08	0.0214	0.0107	RILP->Rab_interacting_lysosomal_protein,chr17:1549444-1553371:-,SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.08	0.23	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	CALM2--SOCS5	2	0	CALM2	1161	chr2:47403580:-	SOCS5	16436	chr2:46985658:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,SOCS5->chr2:46926091-46990268:+,suppressor_of_cytokine_signaling_5	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	CHRFAM7A--EIF4G3	2	0	CHRFAM7A	5236	chr15:30673906:-	EIF4G3	50509	chr1:21187010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CHRFAM7A->CHRNA7_(exons_5-10)_and_FAM7A_(exons_A-E)_fusion,chr15:30653443-30686052:-,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	CPSF4--ARPC1A	2	0	CPSF4	3909	chr7:99042462:+	ARPC1A	16077	chr7:98930948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LOCAL_REARRANGEMENT:+:[50758],CPSF4->chr7:99036545-99054994:+,cleavage_and_polyadenylation_specific_factor_4,ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	1	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	CPSF6--IVNS1ABP	2	0	CPSF6	11046	chr12:69656342:+	IVNS1ABP	26367	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	3	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	GNB1--UBB	2	0	GNB1	1237	chr1:1822259:-	UBB	23081	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	NLN--CCDC94	2	0	NLN	16272	chr5:65108218:+	CCDC94	32517	chr19:4249225:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NLN->chr5:65018023-65167553:+,neurolysin,CCDC94->chr19:4247076-4269087:+,coiled-coil_domain_containing_94	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-51M18.1--FAM192A	2	0	RP11-51M18.1	1312	chr8:84316304:+	FAM192A	12513	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	RP11-51M18.1->chr8:84315993-84321135:+,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	SENP2--FKBP10	2	0	SENP2	3765	chr3:185307957:+	FKBP10	32091	chr17:39977199:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SENP2->SUMO1/sentrin/SMT3_specific_peptidase_2,chr3:185300284-185351339:+,FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-722M1.1--RP11-431M7.2	1	1	RP11-722M1.1	7110	chr4:36500049:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	NO	13	0	0.13	1	0.0107	0.0107	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.13	1	0.0214	TRUE	0	1	0	4	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-722M1.1--RP11-431M7.2	1	1	RP11-722M1.1	4366	chr4:36584279:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	31	0	0.06	1	0.0107	0.0107	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0214	TRUE	0	1	0	4	1	TRUE	ACH-000137
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COX16--TMEM106B	20	10	COX16	1213	chr14:70826236:-	TMEM106B	11940	chr7:12254435:+	ONLY_REF_SPLICE	YES	30	6	0.5	0.83	0.3573	0.1786	COX16->COX16_cytochrome_c_oxidase_assembly_homolog,chr14:70791798-70826448:-,TMEM106B->chr7:12250867-12282993:+,transmembrane_protein_106B	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.83	0.5359	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARFIP1--FNDC3B	10	9	ARFIP1	1290	chr4:153701378:+	FNDC3B	25012	chr3:171830242:+	ONLY_REF_SPLICE	YES	1	6	0.95	0.76	0.1786	0.1608	ARFIP1->ADP_ribosylation_factor_interacting_protein_1,chr4:153701089-153839615:+,FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.95	0.3394	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EHD3--SLC25A6	8	0	EHD3	7910	chr2:31489638:+	SLC25A6	18299	chrX:1505478:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1429	0	EHD3->EH_domain_containing_3,chr2:31456880-31492313:+,SLC25A6->chrX:1505045-1511617:-,chrY:1455045-1461617:-,solute_carrier_family_25_member_6	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1429	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNDC3B--ARFIP1	5	1	FNDC3B	1144	chr3:171757561:+	ARFIP1	51680	chr4:153750777:+	ONLY_REF_SPLICE	YES	5	1	0.55	0.86	0.0893	0.0179	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,ARFIP1->ADP_ribosylation_factor_interacting_protein_1,chr4:153701089-153839615:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.86	0.1072	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAP1--RPS28	3	0	BAP1	7745	chr3:52437622:-	RPS28	13692	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	BAP1->ArcherDX_panel,BRCA1_associated_protein_1,FoundationOne_panel,Oncogene{Bushman},chr3:52435029-52444366:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ2A--HMGN2	3	0	BAZ2A	15686	chr12:56997370:-	HMGN2	26742	chr1:26799006:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FRS2--ZMYM2	3	0	FRS2	6634	chr12:69925836:+	ZMYM2	51023	chr13:20656156:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRD1--HNRNPF	3	0	NRD1	17272	chr1:52280448:-	HNRNPF	43903	chr10:43881586:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	NRD1->chr1:52254863-52344477:-,HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS14--KIAA1429	3	0	RPS14	3089	chr5:149827231:-	KIAA1429	17272	chr8:95541439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	RPS14->chr5:149822753-149829319:-,ribosomal_protein_S14,KIAA1429->KIAA1429,chr8:95499921-95565757:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TGFB1--NELFE	3	0	TGFB1	1236	chr19:41859581:-	NELFE	18053	chr6:31922395:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1,NELFE->chr6:31919864-31926887:-,negative_elongation_factor_complex_member_E	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TJP1--ARCN1	3	0	TJP1	22842	chr15:30020142:-	ARCN1	45747	chr11:118454599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	TJP1->chr15:29991571-30261068:-,tight_junction_protein_1,ARCN1->archain_1,chr11:118443105-118473748:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AIMP2--CHAF1A	2	0	AIMP2	1254	chr7:6049129:+	CHAF1A	15075	chr19:4422563:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	AIMP2->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_2,chr7:6048876-6063465:+,CHAF1A->chr19:4402659-4445015:+,chromatin_assembly_factor_1_subunit_A	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	2	0	AP003900.6	1122	chr21:11169841:+	AC011718.2	15042	chr22:20643785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	2	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP17--DCTN5	2	0	ARHGAP17	4834	chr16:24988536:-	DCTN5	39936	chr16:23669828:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	ARHGAP17->Rho_GTPase_activating_protein_17,chr16:24930706-25026987:-,DCTN5->chr16:23652713-23681195:+,dynactin_subunit_5	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSNK1D--NDUFS6	2	0	CSNK1D	1426	chr17:80231182:-	NDUFS6	26123	chr5:1814453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-,NDUFS6->NADH:ubiquinone_oxidoreductase_subunit_S6,chr5:1801514-1816719:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FANCI--YWHAQ	2	0	FANCI	1119	chr15:89787298:+	YWHAQ	44822	chr2:9731644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KDM2A--XPOT	2	0	KDM2A	2906	chr11:66888829:+	XPOT	36347	chr12:64803742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A,XPOT->chr12:64798130-64844907:+,exportin_for_tRNA	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LMAN2--BAG6	2	0	LMAN2	5644	chr5:176761285:-	BAG6	20735	chr6:31609005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	LMAN2->chr5:176758563-176778853:-,lectin,_mannose_binding_2,BAG6->BCL2_associated_athanogene_6,chr6:31606805-31620482:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA8--STRBP	2	0	NDUFA8	1193	chr9:124921906:-	STRBP	27906	chr9:125898794:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	NDUFA8->NADH:ubiquinone_oxidoreductase_subunit_A8,chr9:124894745-124922098:-,STRBP->chr9:125871779-126030855:-,spermatid_perinuclear_RNA_binding_protein	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2J3--SCG5	2	0	POLR2J3	5847	chr7:102207444:-	SCG5	19709	chr15:32935787:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,SCG5->chr15:32933877-32989299:+,secretogranin_V	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDM5--RP11-366F6.2	2	0	PRDM5	11780	chr4:121737608:-	RP11-366F6.2	39893	chrX:151073261:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	PRDM5->PR_domain_5,chr4:121606074-121844025:-,RP11-366F6.2->chrX:151072903-151082440:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-435B5.4--KANSL1	2	0	RP11-435B5.4	2843	chr1:143465380:-	KANSL1	24756	chr17:44249598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	RP11-435B5.4->chr1:143354963-143467632:-,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-529K1.2--ATXN7	2	0	RP11-529K1.2	3850	chr16:70367723:-	ATXN7	23833	chr3:63976414:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	RP11-529K1.2->chr16:70349543-70380650:-,ATXN7->ataxin_7,chr3:63850233-63989138:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCFD2--CPT2	2	0	SCFD2	5445	chr4:54139993:-	CPT2	21644	chr1:53678936:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAGAP--RALY	2	0	TAGAP	6282	chr6:159460146:-	RALY	16482	chr20:32619328:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	TAGAP->T-cell_activation_RhoGTPase_activating_protein,chr6:159455500-159466184:-,RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMMDC1--COPB2	2	0	TIMMDC1	6578	chr3:119236162:+	COPB2	33056	chr3:139077113:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	TIMMDC1->chr3:119217379-119243937:+,translocase_of_inner_mitochondrial_membrane_domain_containing_1,COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAPA--ANKRD12	2	0	VAPA	1334	chr18:9914332:+	ANKRD12	37033	chr18:9254209:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XPR1--FCRL5	2	0	XPR1	7223	chr1:180780624:+	FCRL5	42200	chr1:157494347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,FCRL5->Fc_receptor_like_5,Oncogene{Bushman},chr1:157483167-157522310:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPESP1--INTS1	1	1	SPESP1	1097	chr15:69110656:+	INTS1	21527	chr7:1529318:-	ONLY_REF_SPLICE	YES	0	17	1	0.11	0.0179	0.0179	SPESP1->chr15:69110560-69239150:+,sperm_equatorial_segment_protein_1,INTS1->chr7:1509913-1545489:-,integrator_complex_subunit_1	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000626
A204_SOFT_TISSUE	PAK2--PIGX	25	23	PAK2	1301	chr3:196467028:+	PIGX	27705	chr3:196443729:+	ONLY_REF_SPLICE	YES	52	10	0.48	0.83	0.3514	0.3233	LOCAL_REARRANGEMENT:+:[3850],PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2,PIGX->chr3:196366646-196462878:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_X	A204_SOFT_TISSUE	0.48	0.83	0.6747	TRUE	0	0	0	1	0	TRUE	ACH-000201
A204_SOFT_TISSUE	PAK2--PIGX	7	10	PAK2	1301	chr3:196467028:+	PIGX	30982	chr3:196449286:+	ONLY_REF_SPLICE	YES	52	28	0.25	0.38	0.0984	0.1405	LOCAL_REARRANGEMENT:+:[3850],PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2,PIGX->chr3:196366646-196462878:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_X	A204_SOFT_TISSUE	0.25	0.38	0.2389	TRUE	0	0	0	1	0	TRUE	ACH-000201
A204_SOFT_TISSUE	NRG1--NRG1-IT1	4	6	NRG1	2344	chr8:31498245:+	NRG1-IT1	30006	chr8:31886895:+	ONLY_REF_SPLICE	YES	13	0	0.43	1	0.0562	0.0843	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	A204_SOFT_TISSUE	0.43	1	0.1405	TRUE	1	0	0	3	0	TRUE	ACH-000201
A204_SOFT_TISSUE	NRG1--NRG1-IT2	4	4	NRG1	2344	chr8:31498245:+	NRG1-IT2	31143	chr8:32144617:+	ONLY_REF_SPLICE	YES	13	0	0.38	1	0.0562	0.0562	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT2->chr8:32028898-32145082:+	A204_SOFT_TISSUE	0.38	1	0.1124	TRUE	0	2	0	3	2	TRUE	ACH-000201
A204_SOFT_TISSUE	ATN1--ENO1	3	0	ATN1	5734	chr12:7045589:+	ENO1	14564	chr1:8938672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	ATN1->atrophin_1,chr12:7033626-7051484:+,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	A204_SOFT_TISSUE	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000201
A204_SOFT_TISSUE	FAM118A--CRH	3	0	FAM118A	5582	chr22:45718307:+	CRH	21239	chr8:67090598:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	FAM118A->chr22:45704849-45737836:+,family_with_sequence_similarity_118_member_A,CRH->chr8:67088620-67090960:-,corticotropin_releasing_hormone	A204_SOFT_TISSUE	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000201
A204_SOFT_TISSUE	NRG1--NRG1-IT1	2	4	NRG1	2344	chr8:31498245:+	NRG1-IT1	37780	chr8:31996731:+	ONLY_REF_SPLICE	YES	13	0	0.32	1	0.0281	0.0562	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	A204_SOFT_TISSUE	0.32	1	0.0843	TRUE	0	3	0	4	3	TRUE	ACH-000201
A204_SOFT_TISSUE	RLF--MYCL	2	0	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	A204_SOFT_TISSUE	1	1	0.0281	TRUE	0	0	0	10	0	TRUE	ACH-000201
A204_SOFT_TISSUE	UBE2T--GYS1	2	0	UBE2T	1086	chr1:202311023:-	GYS1	16570	chr19:49481414:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	UBE2T->chr1:202300785-202311108:-,ubiquitin_conjugating_enzyme_E2_T,GYS1->chr19:49471382-49496567:-,glycogen_synthase_1	A204_SOFT_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000201
EKVX_LUNG	GMDS--RP11-284J1.1	51	45	GMDS	10931	chr6:1930337:-	RP11-284J1.1	23635	chr6:776969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5907	0.5212	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,RP11-284J1.1->chr6:774747-780214:-	EKVX_LUNG	1	1	1.1119	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	CUL5--RP11-680E19.2	28	47	CUL5	12496	chr11:107948967:+	RP11-680E19.2	27117	chr11:106181513:+	INCL_NON_REF_SPLICE	YES	585	8	0.11	0.9	0.3243	0.5444	CUL5->chr11:107879459-107978503:+,cullin_5,RP11-680E19.2->chr11:106180772-106182518:+	EKVX_LUNG	0.11	0.9	0.8687	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	UVRAG--CCDC67	25	19	UVRAG	21434	chr11:75728024:+	CCDC67	50791	chr11:93170709:+	ONLY_REF_SPLICE	YES	46	0	0.49	1	0.2896	0.2201	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,CCDC67->chr11:93063137-93171653:+,coiled-coil_domain_containing_67	EKVX_LUNG	0.49	1	0.5097	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	ATXN2--BRAP	22	2	ATXN2	1893	chr12:112036588:-	BRAP	43409	chr12:112103591:-	ONLY_REF_SPLICE	YES	3	40	0.89	0.38	0.2548	0.0232	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},LOCAL_REARRANGEMENT:-:[42470],ATXN2->ataxin_2,chr12:111890018-112037480:-,BRAP->BRCA1_associated_protein,chr12:112079950-112123790:-	EKVX_LUNG	0.38	0.89	0.278	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	ZNF217--RP11-499O7.7	17	20	ZNF217	12223	chr20:52188260:-	RP11-499O7.7	18973	chr10:5038229:+	ONLY_REF_SPLICE	YES	167	17	0.18	0.69	0.1969	0.2317	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,RP11-499O7.7->chr10:5037680-5039572:+	EKVX_LUNG	0.18	0.69	0.4286	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	NARS2--MMP10	17	19	NARS2	7420	chr11:78270585:-	MMP10	21347	chr11:102650092:-	ONLY_REF_SPLICE	YES	247	33	0.13	0.52	0.1969	0.2201	{Klijn_CCL:Lung=1},NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-,MMP10->chr11:102641234-102651359:-,matrix_metallopeptidase_10	EKVX_LUNG	0.13	0.52	0.417	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	NEU3--ZDHHC24	14	25	NEU3	6879	chr11:74716670:+	ZDHHC24	14672	chr11:66311452:-	ONLY_REF_SPLICE	YES	18	87	0.68	0.31	0.1622	0.2896	NEU3->Oncogene{Bushman},chr11:74699179-74729938:+,neuraminidase_3_(membrane_sialidase),ZDHHC24->chr11:66288108-66313709:-,zinc_finger_DHHC-type_containing_24	EKVX_LUNG	0.31	0.68	0.4518	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	TGFBR2--GPD1L	17	8	TGFBR2	1476	chr3:30648469:+	GPD1L	17834	chr3:32169568:+	ONLY_REF_SPLICE	YES	18	44	0.58	0.36	0.1969	0.0927	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like	EKVX_LUNG	0.36	0.58	0.2896	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	RP5-977B1.7--NDRG3	12	11	RP5-977B1.7	7893	chr20:35153904:-	NDRG3	25745	chr20:35294795:-	ONLY_REF_SPLICE	YES	1	189	0.96	0.11	0.139	0.1274	LOCAL_REARRANGEMENT:-:[78375],RP5-977B1.7->chr20:35136563-35201794:-,NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-	EKVX_LUNG	0.11	0.96	0.2664	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	NARS2--MMP10	6	25	NARS2	7420	chr11:78270585:-	MMP10	20963	chr11:102650476:-	ONLY_REF_SPLICE	YES	247	33	0.11	0.48	0.0695	0.2896	{Klijn_CCL:Lung=1},NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-,MMP10->chr11:102641234-102651359:-,matrix_metallopeptidase_10	EKVX_LUNG	0.11	0.48	0.3591	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	GMDS--RP11-284J1.1	9	10	GMDS	10931	chr6:1930337:-	RP11-284J1.1	24974	chr6:775630:-	INCL_NON_REF_SPLICE	YES	0	34	1	0.36	0.1042	0.1158	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,RP11-284J1.1->chr6:774747-780214:-	EKVX_LUNG	0.36	1	0.22	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	RP5-977B1.7--NDRG3	8	10	RP5-977B1.7	2583	chr20:35199844:-	NDRG3	25745	chr20:35294795:-	ONLY_REF_SPLICE	YES	0	189	1	0.09	0.0927	0.1158	LOCAL_REARRANGEMENT:-:[78375],RP5-977B1.7->chr20:35136563-35201794:-,NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-	EKVX_LUNG	0.09	1	0.2085	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	8	6	THRB	1596	chr3:24536178:-	ZCWPW2	37185	chr3:28533618:+	ONLY_REF_SPLICE	YES	5	4	0.74	0.78	0.0927	0.0695	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	0.74	0.78	0.1622	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	GMDS--RP11-284J1.1	2	27	GMDS	8873	chr6:1960101:-	RP11-284J1.1	23635	chr6:776969:-	ONLY_REF_SPLICE	YES	12	0	0.71	1	0.0232	0.3127	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,RP11-284J1.1->chr6:774747-780214:-	EKVX_LUNG	0.71	1	0.3359	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	ATXN2--BRAP	6	7	ATXN2	2761	chr12:112035720:-	BRAP	43409	chr12:112103591:-	ONLY_REF_SPLICE	YES	11	40	0.54	0.25	0.0695	0.0811	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},LOCAL_REARRANGEMENT:-:[42470],ATXN2->ataxin_2,chr12:111890018-112037480:-,BRAP->BRCA1_associated_protein,chr12:112079950-112123790:-	EKVX_LUNG	0.25	0.54	0.1506	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	GULP1--ANKAR	5	5	GULP1	2444	chr2:189157839:+	ANKAR	33432	chr2:190554253:+	ONLY_REF_SPLICE	YES	256	15	0.04	0.4	0.0579	0.0579	GULP1->GULP,_engulfment_adaptor_PTB_domain_containing_1,chr2:189156396-189460653:+,ANKAR->ankyrin_and_armadillo_repeat_containing,chr2:190539016-190625919:+	EKVX_LUNG	0.04	0.4	0.1158	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	PLCB4--PLCB1	6	0	PLCB4	1141	chr20:9049550:+	PLCB1	86832	chr20:8862269:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0695	0	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	EKVX_LUNG	1	1	0.0695	TRUE	0	0	0	2	0	TRUE	ACH-000706
EKVX_LUNG	RP11-162A12.2--ALKBH8	4	0	RP11-162A12.2	1280	chr18:74533972:-	ALKBH8	10919	chr11:107431625:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0463	0	RP11-162A12.2->chr18:74506688-74534251:-,ALKBH8->alkB_homolog_8,_tRNA_methyltransferase,chr11:107373452-107436472:-	EKVX_LUNG	1	1	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	NCOA3--RP11-1M18.1	3	3	NCOA3	1163	chr20:46130763:+	RP11-1M18.1	29532	chrX:6639585:-	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0347	0.0347	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,RP11-1M18.1->chrX:6585906-6639585:-	EKVX_LUNG	0.26	1	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	UVRAG--CCDC67	1	11	UVRAG	19092	chr11:75719911:+	CCDC67	50791	chr11:93170709:+	ONLY_REF_SPLICE	NO	70	0	0.15	1	0.0116	0.1274	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,CCDC67->chr11:93063137-93171653:+,coiled-coil_domain_containing_67	EKVX_LUNG	0.15	1	0.139	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	NCOA3--RP11-1M18.1	3	2	NCOA3	1163	chr20:46130763:+	RP11-1M18.1	30660	chrX:6624507:-	ONLY_REF_SPLICE	YES	17	0	0.23	1	0.0347	0.0232	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,RP11-1M18.1->chrX:6585906-6639585:-	EKVX_LUNG	0.23	1	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	2	6	THRB	1631	chr3:24536143:-	ZCWPW2	39357	chr3:28555555:+	ONLY_REF_SPLICE	YES	7	5	0.53	0.62	0.0232	0.0695	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	0.53	0.62	0.0927	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	WTAPP1--RP11-843A23.1	3	2	WTAPP1	2324	chr11:102622157:+	RP11-843A23.1	18949	chr11:78269310:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0.0232	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RP11-843A23.1->chr11:78244222-78269611:+	EKVX_LUNG	1	1	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	ZNF217--RP11-499O7.7	1	10	ZNF217	11090	chr20:52192266:-	RP11-499O7.7	18973	chr10:5038229:+	ONLY_REF_SPLICE	YES	176	17	0.06	0.39	0.0116	0.1158	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,RP11-499O7.7->chr10:5037680-5039572:+	EKVX_LUNG	0.06	0.39	0.1274	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	TGFBR2--GPD1L	3	1	TGFBR2	1092	chr3:30648085:+	GPD1L	17834	chr3:32169568:+	INCL_NON_REF_SPLICE	YES	1	44	0.8	0.08	0.0347	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like	EKVX_LUNG	0.08	0.8	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	3	0	THRB	1488	chr3:24536286:-	ZCWPW2	39357	chr3:28555555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	GULP1--ANKAR	2	3	GULP1	1498	chr2:189156893:+	ANKAR	33432	chr2:190554253:+	ONLY_REF_SPLICE	YES	133	15	0.04	0.25	0.0232	0.0347	GULP1->GULP,_engulfment_adaptor_PTB_domain_containing_1,chr2:189156396-189460653:+,ANKAR->ankyrin_and_armadillo_repeat_containing,chr2:190539016-190625919:+	EKVX_LUNG	0.04	0.25	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	1	6	THRB	1631	chr3:24536143:-	ZCWPW2	37185	chr3:28533618:+	ONLY_REF_SPLICE	YES	7	4	0.5	0.64	0.0116	0.0695	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	0.5	0.64	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	1	6	THRB	1596	chr3:24536178:-	ZCWPW2	39357	chr3:28555555:+	ONLY_REF_SPLICE	YES	5	5	0.58	0.58	0.0116	0.0695	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	0.58	0.58	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	ANTXR1--ACTR2	2	0	ANTXR1	14156	chr2:69351775:+	ACTR2	42591	chr2:65495698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,ACTR2->ARP2_actin-related_protein_2_homolog_(yeast),chr2:65454887-65498387:+	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	BCL6--MRPL47	2	0	BCL6	5252	chr3:187452657:-	MRPL47	21062	chr3:179319578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	BCL6->B-cell_CLL/lymphoma_6,Oncogene{Bushman},chr3:187439165-187463515:-,MRPL47->chr3:179306073-179322442:-,mitochondrial_ribosomal_protein_L47	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	EXT2--HSD17B12	2	0	EXT2	12956	chr11:44151688:+	HSD17B12	54733	chr11:43876265:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000706
EKVX_LUNG	LINC01004--SRPK2	2	0	LINC01004	1113	chr7:104653379:-	SRPK2	21959	chr7:104787105:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:-:[97660],LINC01004->chr7:104590762-104653491:-,long_intergenic_non-protein_coding_RNA_1004,SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	PIGN--CCDC9	2	0	PIGN	1275	chr18:59854077:-	CCDC9	49356	chr19:47769868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	PIGN->chr18:59710800-59854351:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_N,CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	SLC7A6--PIGG	2	0	SLC7A6	3192	chr16:68300624:+	PIGG	32734	chr4:517248:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	SRSF11--UFC1	2	0	SRSF11	1099	chr1:70671463:+	UFC1	24579	chr1:161123716:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11,UFC1->chr1:161122566-161128646:+,ubiquitin-fold_modifier_conjugating_enzyme_1	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	1	4	THRB	1596	chr3:24536178:-	ZCWPW2	41484	chr3:28562483:+	ONLY_REF_SPLICE	YES	5	12	0.5	0.29	0.0116	0.0463	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	0.29	0.5	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	2	0	THRB	1150	chr3:24536624:-	ZCWPW2	37185	chr3:28533618:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
SNU719_STOMACH	TMEM181--WTAP	32	7	TMEM181	12663	chr6:159046238:+	WTAP	28071	chr6:160160022:+	ONLY_REF_SPLICE	YES	24	49	0.62	0.44	0.4198	0.0918	TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,WTAP->Wilms_tumor_1_associated_protein,chr6:160146617-160177351:+	SNU719_STOMACH	0.44	0.62	0.5116	TRUE	0	0	0	1	0	TRUE	ACH-000898
SNU719_STOMACH	RCC1--SERINC2	20	0	RCC1	2175	chr1:28834672:+	SERINC2	30138	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2624	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	SNU719_STOMACH	1	1	0.2624	TRUE	0	24	0	2	11	TRUE	ACH-000898
SNU719_STOMACH	AP003900.6--AC011718.2	3	29	AP003900.6	1122	chr21:11169841:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0394	0.3804	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU719_STOMACH	0.91	1	0.4198	TRUE	0	0	0	11	0	TRUE	ACH-000898
SNU719_STOMACH	AP003900.6--AC011718.2	1	15	AP003900.6	2187	chr21:11172043:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	3	0	0.84	1	0.0131	0.1968	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU719_STOMACH	0.84	1	0.2099	TRUE	0	0	0	5	0	TRUE	ACH-000898
SNU719_STOMACH	AP003900.6--AC011718.2	2	9	AP003900.6	2187	chr21:11172043:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	3	19	0.79	0.37	0.0262	0.1181	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU719_STOMACH	0.37	0.79	0.1443	TRUE	0	0	0	4	0	TRUE	ACH-000898
SNU719_STOMACH	C17orf76-AS1--SERINC2	4	0	C17orf76-AS1	1593	chr17:16342728:+	SERINC2	24463	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0525	0	C17orf76-AS1->chr17:16342136-16381992:+,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	SNU719_STOMACH	1	1	0.0525	TRUE	0	4	0	2	2	TRUE	ACH-000898
SNU719_STOMACH	SIRT2--ZFP30	4	0	SIRT2	1357	chr19:39390146:-	ZFP30	27819	chr19:38127206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0525	0	SIRT2->chr19:39369197-39390502:-,sirtuin_2,ZFP30->ZFP30_zinc_finger_protein,chr19:38104650-38183238:-	SNU719_STOMACH	1	1	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000898
SNU719_STOMACH	AC073283.4--EPCAM	3	0	AC073283.4	1174	chr2:47572040:-	EPCAM	20907	chr2:47606092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	SNU719_STOMACH	1	1	0.0394	TRUE	0	5	0	5	2	TRUE	ACH-000898
SNU719_STOMACH	AC073283.4--EPCAM	2	0	AC073283.4	1174	chr2:47572040:-	EPCAM	22924	chr2:47612305:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	SNU719_STOMACH	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000898
SNU719_STOMACH	GAS5--PCCA	2	0	GAS5	3122	chr1:173835899:-	PCCA	34973	chr13:101077887:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding),PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	SNU719_STOMACH	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000898
SNU719_STOMACH	SEC31A--LIN54	1	1	SEC31A	4707	chr4:83812241:-	LIN54	54858	chr4:83852298:-	ONLY_REF_SPLICE	YES	12	18	0.14	0.1	0.0131	0.0131	LOCAL_REARRANGEMENT:-:[8807],SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,LIN54->chr4:83831126-83934079:-,lin-54_DREAM_MuvB_core_complex_component	SNU719_STOMACH	0.1	0.14	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000898
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	232	0	RPL14	4483	chr3:40503515:+	AC005540.3	8966	chr2:191745649:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	3.2246	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	3.2246	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	GORASP2--CDADC1	147	55	GORASP2	10899	chr2:171813069:+	CDADC1	25440	chr13:49848427:+	ONLY_REF_SPLICE	YES	143	8	0.59	0.96	2.0432	0.7645	GORASP2->chr2:171784974-171823639:+,golgi_reassembly_stacking_protein_2,CDADC1->chr13:49822047-49867618:+,cytidine_and_dCMP_deaminase_domain_containing_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.59	0.96	2.8077	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NUTF2--PRMT7	62	1	NUTF2	1254	chr16:67880888:+	PRMT7	17434	chr16:68358586:+	ONLY_REF_SPLICE	YES	0	29	1	0.68	0.8617	0.0139	NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	KNS42_CENTRAL_NERVOUS_SYSTEM	0.68	1	0.8756	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	CLIC5--AC010883.5	46	16	CLIC5	7603	chr6:45909284:-	AC010883.5	25484	chr2:43459874:+	INCL_NON_REF_SPLICE	YES	147	0	0.3	1	0.6394	0.2224	CLIC5->chloride_intracellular_channel_5,chr6:45868045-46048132:-,AC010883.5->chr2:43456712-43460533:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.8618	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	C17orf62--STRA13	36	12	C17orf62	5966	chr17:80403740:-	STRA13	14565	chr17:79977785:-	ONLY_REF_SPLICE	YES	95	22	0.34	0.69	0.5004	0.1668	C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62,STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13	KNS42_CENTRAL_NERVOUS_SYSTEM	0.34	0.69	0.6672	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	PTBP2--MYSM1	33	23	PTBP2	10604	chr1:97250810:+	MYSM1	45970	chr1:59127183:-	ONLY_REF_SPLICE	YES	10	20	0.85	0.74	0.4587	0.3197	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,MYSM1->Myb_like,_SWIRM_and_MPN_domains_1,chr1:59120411-59165764:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.74	0.85	0.7784	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	ZNF605--TWF1	36	9	ZNF605	5653	chr12:133509621:-	TWF1	24665	chr12:44189558:-	ONLY_REF_SPLICE	YES	10	251	0.82	0.15	0.5004	0.1251	ZNF605->chr12:133498019-133532892:-,zinc_finger_protein_605,TWF1->chr12:44187526-44200178:-,twinfilin_actin_binding_protein_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.15	0.82	0.6255	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MPHOSPH9--C12orf55	25	28	MPHOSPH9	13160	chr12:123694603:-	C12orf55	103164	chr12:97186149:+	INCL_NON_REF_SPLICE	YES	29	0	0.65	1	0.3475	0.3892	MPHOSPH9->M-phase_phosphoprotein_9,chr12:123636867-123728561:-,C12orf55->chr12:96883349-97269333:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.65	1	0.7367	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NUTF2--PRMT7	26	9	NUTF2	1725	chr16:67881359:+	PRMT7	17434	chr16:68358586:+	ONLY_REF_SPLICE	YES	21	29	0.62	0.55	0.3614	0.1251	NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	KNS42_CENTRAL_NERVOUS_SYSTEM	0.55	0.62	0.4865	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	26	0	RPL14	4486	chr3:40503518:+	AC005540.3	8972	chr2:191745643:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3614	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.3614	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MPHOSPH9--C12orf55	15	31	MPHOSPH9	13160	chr12:123694603:-	C12orf55	103122	chr12:97186107:+	ONLY_REF_SPLICE	YES	29	0	0.61	1	0.2085	0.4309	MPHOSPH9->M-phase_phosphoprotein_9,chr12:123636867-123728561:-,C12orf55->chr12:96883349-97269333:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.61	1	0.6394	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	CLIC5--AC010883.5	19	12	CLIC5	7603	chr6:45909284:-	AC010883.5	25513	chr2:43459903:+	ONLY_REF_SPLICE	YES	147	0	0.17	1	0.2641	0.1668	CLIC5->chloride_intracellular_channel_5,chr6:45868045-46048132:-,AC010883.5->chr2:43456712-43460533:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.4309	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	TRAPPC8--DSC1	17	10	TRAPPC8	23878	chr18:29444590:-	DSC1	41860	chr18:28739492:-	ONLY_REF_SPLICE	YES	28	1	0.49	0.96	0.2363	0.139	TRAPPC8->chr18:29409136-29533099:-,trafficking_protein_particle_complex_8,DSC1->chr18:28709199-28742819:-,desmocollin_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.49	0.96	0.3753	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	LMBRD1--RP1-177I10.1	17	7	LMBRD1	14756	chr6:70407455:-	RP1-177I10.1	21294	chr6:92100262:-	ONLY_REF_SPLICE	YES	72	0	0.25	1	0.2363	0.0973	LMBRD1->LMBR1_domain_containing_1,chr6:70385694-70507003:-,RP1-177I10.1->chr6:92100031-92102718:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.25	1	0.3336	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	CADPS--FHIT	13	2	CADPS	32585	chr3:62477014:-	FHIT	59604	chr3:61027771:-	ONLY_REF_SPLICE	YES	24	1	0.38	0.94	0.1807	0.0278	CADPS->Ca2+_dependent_secretion_activator,chr3:62384022-62861054:-,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	KNS42_CENTRAL_NERVOUS_SYSTEM	0.38	0.94	0.2085	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	13	0	RPL14	4486	chr3:40503518:+	AC005540.3	8975	chr2:191745640:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1807	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.1807	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MPHOSPH9--C12orf55	3	33	MPHOSPH9	13160	chr12:123694603:-	C12orf55	102057	chr12:97180612:+	INCL_NON_REF_SPLICE	YES	29	1	0.55	0.97	0.0417	0.4587	MPHOSPH9->M-phase_phosphoprotein_9,chr12:123636867-123728561:-,C12orf55->chr12:96883349-97269333:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.55	0.97	0.5004	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	FRY--CYBRD1	9	6	FRY	40493	chr13:32800111:+	CYBRD1	79331	chr2:172409856:+	ONLY_REF_SPLICE	YES	1	300	0.94	0.05	0.1251	0.0834	FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+,CYBRD1->chr2:172378757-172414643:+,cytochrome_b_reductase_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.05	0.94	0.2085	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MPHOSPH9--C12orf55	2	33	MPHOSPH9	13160	chr12:123694603:-	C12orf55	101898	chr12:97180453:+	ONLY_REF_SPLICE	YES	29	0	0.55	1	0.0278	0.4587	MPHOSPH9->M-phase_phosphoprotein_9,chr12:123636867-123728561:-,C12orf55->chr12:96883349-97269333:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.55	1	0.4865	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	GORASP2--CDADC1	1	36	GORASP2	10899	chr2:171813069:+	CDADC1	26490	chr13:49852486:+	ONLY_REF_SPLICE	YES	143	10	0.21	0.79	0.0139	0.5004	GORASP2->chr2:171784974-171823639:+,golgi_reassembly_stacking_protein_2,CDADC1->chr13:49822047-49867618:+,cytidine_and_dCMP_deaminase_domain_containing_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.21	0.79	0.5143	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MPHOSPH9--C12orf55	6	14	MPHOSPH9	13160	chr12:123694603:-	C12orf55	104293	chr12:97205514:+	ONLY_REF_SPLICE	YES	29	7	0.41	0.74	0.0834	0.1946	MPHOSPH9->M-phase_phosphoprotein_9,chr12:123636867-123728561:-,C12orf55->chr12:96883349-97269333:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.41	0.74	0.278	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	PTBP2--MYSM1	3	24	PTBP2	10604	chr1:97250810:+	MYSM1	44837	chr1:59131303:-	ONLY_REF_SPLICE	YES	10	26	0.73	0.51	0.0417	0.3336	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,MYSM1->Myb_like,_SWIRM_and_MPN_domains_1,chr1:59120411-59165764:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.51	0.73	0.3753	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	TRAPPC8--DSC1	5	13	TRAPPC8	23878	chr18:29444590:-	DSC1	40543	chr18:28742811:-	INCL_NON_REF_SPLICE	YES	28	0	0.39	1	0.0695	0.1807	TRAPPC8->chr18:29409136-29533099:-,trafficking_protein_particle_complex_8,DSC1->chr18:28709199-28742819:-,desmocollin_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.2502	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	ARID2--ITGA5	5	4	ARID2	2571	chr12:46125097:+	ITGA5	35959	chr12:54805748:-	ONLY_REF_SPLICE	YES	14	12	0.39	0.43	0.0695	0.0556	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,ITGA5->chr12:54789045-54813244:-,integrin_subunit_alpha_5	KNS42_CENTRAL_NERVOUS_SYSTEM	0.39	0.43	0.1251	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	6	0	RPL14	4495	chr3:40503527:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0834	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	6	0	RPL14	4492	chr3:40503524:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0834	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	TRAPPC8--DSC1	3	11	TRAPPC8	23878	chr18:29444590:-	DSC1	40674	chr18:28742680:-	INCL_NON_REF_SPLICE	YES	28	0	0.33	1	0.0417	0.1529	TRAPPC8->chr18:29409136-29533099:-,trafficking_protein_particle_complex_8,DSC1->chr18:28709199-28742819:-,desmocollin_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.1946	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	ERBB4--AC079610.1	5	2	ERBB4	1393	chr2:213403173:-	AC079610.1	50458	chr2:213446132:-	ONLY_REF_SPLICE	YES	9	0	0.44	1	0.0695	0.0278	LOCAL_REARRANGEMENT:-:[42516],ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,AC079610.1->chr2:213446081-213886269:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.0973	TRUE	0	2	0	3	2	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	C17orf62--STRA13	5	0	C17orf62	1130	chr17:80408576:-	STRA13	14565	chr17:79977785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0695	0	C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62,STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0695	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	5	0	RPL14	4498	chr3:40503530:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0695	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0695	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	5	0	RPL14	4487	chr3:40503519:+	AC005540.3	8967	chr2:191745648:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0695	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0695	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	SYT1--RP11-171L9.1	4	1	SYT1	18973	chr12:79693331:+	RP11-171L9.1	31828	chr12:78842981:-	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0556	0.0139	SYT1->chr12:79257773-79845788:+,synaptotagmin_1,RP11-171L9.1->chr12:78842775-78934455:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0695	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	4	0	RPL14	4485	chr3:40503517:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0556	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	ZNF385B--URI1	4	0	ZNF385B	13883	chr2:180427126:-	URI1	37837	chr19:30462100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0556	0	ZNF385B->chr2:180306709-180726232:-,zinc_finger_protein_385B,URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	COG5--SLC26A4-AS1	3	3	COG5	6059	chr7:107188556:-	SLC26A4-AS1	34462	chr7:107302267:-	INCL_NON_REF_SPLICE	YES	30	0	0.17	1	0.0417	0.0417	LOCAL_REARRANGEMENT:-:[89462],COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,SLC26A4-AS1->SLC26A4_antisense_RNA_1,chr7:107294421-107302596:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NUTF2--PRMT7	3	1	NUTF2	1254	chr16:67880888:+	PRMT7	19578	chr16:68362969:+	ONLY_REF_SPLICE	YES	0	67	1	0.06	0.0417	0.0139	NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	KNS42_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	AFTPH--DNMT3A	2	2	AFTPH	4249	chr2:64780543:+	DNMT3A	18911	chr2:25537030:-	ONLY_REF_SPLICE	YES	55	0	0.07	1	0.0278	0.0278	AFTPH->aftiphilin,chr2:64751465-64820139:+,DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	COG5--SLC26A4-AS1	2	2	COG5	6059	chr7:107188556:-	SLC26A4-AS1	41640	chr7:107294678:-	ONLY_REF_SPLICE	YES	30	0	0.12	1	0.0278	0.0278	LOCAL_REARRANGEMENT:-:[89462],COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,SLC26A4-AS1->SLC26A4_antisense_RNA_1,chr7:107294421-107302596:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	COG5--SLC26A4-AS1	2	2	COG5	6059	chr7:107188556:-	SLC26A4-AS1	34526	chr7:107302203:-	ONLY_REF_SPLICE	YES	30	0	0.12	1	0.0278	0.0278	LOCAL_REARRANGEMENT:-:[89462],COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,SLC26A4-AS1->SLC26A4_antisense_RNA_1,chr7:107294421-107302596:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	AC074011.2--PPP1CB	2	0	AC074011.2	1459	chr2:28886948:-	PPP1CB	7119	chr2:28999717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	LOCAL_INVERSION:-:+:[87100],AC074011.2->chr2:28856148-28887406:-,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	CPSF6--SLC44A5	2	0	CPSF6	11046	chr12:69656342:+	SLC44A5	47198	chr1:75669518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SLC44A5->chr1:75667816-76076801:-,solute_carrier_family_44_member_5	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	TMCO3--CUL4A	2	0	TMCO3	12355	chr13:114193822:+	CUL4A	41014	chr13:113917801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,CUL4A->chr13:113862552-113919399:+,cullin_4A	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	ZNF436--TCEA3	1	1	ZNF436	1077	chr1:23695859:-	TCEA3	12599	chr1:23745632:-	ONLY_REF_SPLICE	YES	41	3	0.05	0.4	0.0139	0.0139	LOCAL_REARRANGEMENT:-:[11619],ZNF436->chr1:23685941-23695935:-,zinc_finger_protein_436,TCEA3->chr1:23707554-23751233:-,transcription_elongation_factor_A3	KNS42_CENTRAL_NERVOUS_SYSTEM	0.05	0.4	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000622
647V_URINARY_TRACT	PTK2--TRAPPC9	638	189	PTK2	2092	chr8:142011224:-	TRAPPC9	94279	chr8:140999044:-	ONLY_REF_SPLICE	YES	25	20	0.97	0.98	7.8718	2.3319	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.97	0.98	10.2037	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	ARHGAP23--MRPL45	123	60	ARHGAP23	17583	chr17:36642381:+	MRPL45	35351	chr17:36462500:+	ONLY_REF_SPLICE	YES	222	203	0.45	0.47	1.5176	0.7403	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	647V_URINARY_TRACT	0.45	0.47	2.2579	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	55	207	PTK2	2337	chr8:142010979:-	TRAPPC9	94279	chr8:140999044:-	ONLY_REF_SPLICE	YES	48	20	0.85	0.93	0.6786	2.554	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.85	0.93	3.2326	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	32	230	PTK2	3651	chr8:141993941:-	TRAPPC9	94279	chr8:140999044:-	ONLY_REF_SPLICE	YES	30	20	0.9	0.93	0.3948	2.8378	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.9	0.93	3.2326	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	C15orf39--ADPGK	56	48	C15orf39	3572	chr15:75494400:+	ADPGK	16713	chr15:73067438:-	ONLY_REF_SPLICE	YES	85	205	0.55	0.34	0.6909	0.5922	C15orf39->chr15:75487984-75504510:+,chromosome_15_open_reading_frame_39,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	647V_URINARY_TRACT	0.34	0.55	1.2831	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	5	211	PTK2	3415	chr8:141994177:-	TRAPPC9	94279	chr8:140999044:-	ONLY_REF_SPLICE	YES	46	20	0.82	0.92	0.0617	2.6034	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.82	0.92	2.6651	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	24	86	PTK2	2092	chr8:142011224:-	TRAPPC9	95390	chr8:140922544:-	ONLY_REF_SPLICE	YES	25	172	0.81	0.39	0.2961	1.0611	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.39	0.81	1.3572	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	SVIP--CCDC179	37	17	SVIP	3714	chr11:22848753:-	CCDC179	16394	chr11:22869067:-	ONLY_REF_SPLICE	YES	182	0	0.23	1	0.4565	0.2098	LOCAL_REARRANGEMENT:-:[16632],SVIP->chr11:22835345-22851845:-,small_VCP/p97-interacting_protein,CCDC179->chr11:22868477-22881972:-,coiled-coil_domain_containing_179	647V_URINARY_TRACT	0.23	1	0.6663	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	CHCHD6--ALDH1L1-AS2	25	10	CHCHD6	4504	chr3:126452065:+	ALDH1L1-AS2	21398	chr3:125927169:+	ONLY_REF_SPLICE	YES	121	0	0.22	1	0.3085	0.1234	CHCHD6->chr3:126423063-126679249:+,coiled-coil-helix-coiled-coil-helix_domain_containing_6,ALDH1L1-AS2->ALDH1L1_antisense_RNA_2,chr3:125898908-125929012:+	647V_URINARY_TRACT	0.22	1	0.4319	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	1	103	PTK2	3651	chr8:141993941:-	TRAPPC9	95390	chr8:140922544:-	ONLY_REF_SPLICE	YES	30	172	0.78	0.38	0.0123	1.2708	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.38	0.78	1.2831	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	2	93	PTK2	2337	chr8:142010979:-	TRAPPC9	95390	chr8:140922544:-	ONLY_REF_SPLICE	YES	48	172	0.66	0.36	0.0247	1.1475	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.36	0.66	1.1722	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PLCG1--PHACTR3	21	0	PLCG1	1076	chr20:39765675:+	PHACTR3	36754	chr20:58381096:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2591	0	PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,PHACTR3->chr20:58152564-58422766:+,phosphatase_and_actin_regulator_3	647V_URINARY_TRACT	1	1	0.2591	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	C15orf39--ADPGK	5	50	C15orf39	3572	chr15:75494400:+	ADPGK	13958	chr15:73078187:-	ONLY_REF_SPLICE	YES	85	0	0.39	1	0.0617	0.6169	C15orf39->chr15:75487984-75504510:+,chromosome_15_open_reading_frame_39,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	647V_URINARY_TRACT	0.39	1	0.6786	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	SLC27A5--MAST2	16	1	SLC27A5	9320	chr19:59010490:-	MAST2	25153	chr1:46425058:+	ONLY_REF_SPLICE	YES	6	47	0.74	0.27	0.1974	0.0123	SLC27A5->chr19:58990879-59023780:-,solute_carrier_family_27_member_5,MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2	647V_URINARY_TRACT	0.27	0.74	0.2097	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	16	0	PTK2	1203	chr8:142012113:-	TRAPPC9	94279	chr8:140999044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1974	0	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	1	1	0.1974	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	C15orf39--ADPGK	10	19	C15orf39	3572	chr15:75494400:+	ADPGK	19002	chr15:73052868:-	ONLY_REF_SPLICE	YES	85	209	0.25	0.12	0.1234	0.2344	C15orf39->chr15:75487984-75504510:+,chromosome_15_open_reading_frame_39,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	647V_URINARY_TRACT	0.12	0.25	0.3578	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	C15orf39--ADPGK	1	48	C15orf39	3939	chr15:75494767:+	ADPGK	16713	chr15:73067438:-	ONLY_REF_SPLICE	NO	96	205	0.34	0.19	0.0123	0.5922	C15orf39->chr15:75487984-75504510:+,chromosome_15_open_reading_frame_39,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	647V_URINARY_TRACT	0.19	0.34	0.6045	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	ARHGAP23--MRPL45	1	39	ARHGAP23	16504	chr17:36638919:+	MRPL45	35351	chr17:36462500:+	ONLY_REF_SPLICE	NO	228	203	0.15	0.16	0.0123	0.4812	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	647V_URINARY_TRACT	0.15	0.16	0.4935	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	C15orf39--ADPGK	4	20	C15orf39	3572	chr15:75494400:+	ADPGK	17939	chr15:73064186:-	ONLY_REF_SPLICE	YES	85	150	0.22	0.14	0.0494	0.2468	C15orf39->chr15:75487984-75504510:+,chromosome_15_open_reading_frame_39,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	647V_URINARY_TRACT	0.14	0.22	0.2962	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PPHLN1--ATXN1	8	3	PPHLN1	19729	chr12:42792796:+	ATXN1	42752	chr6:16658132:-	ONLY_REF_SPLICE	YES	97	25	0.1	0.31	0.0987	0.037	PPHLN1->chr12:42632249-42853517:+,periphilin_1,ATXN1->ataxin_1,chr6:16299343-16761722:-	647V_URINARY_TRACT	0.1	0.31	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	CCNYL1--NRP2	7	4	CCNYL1	5170	chr2:208591600:+	NRP2	39629	chr2:206628398:+	ONLY_REF_SPLICE	YES	63	0	0.15	1	0.0864	0.0494	CCNYL1->chr2:208576264-208626563:+,cyclin_Y_like_1,NRP2->chr2:206546714-206662857:+,neuropilin_2	647V_URINARY_TRACT	0.15	1	0.1358	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	ARHGAP23--MRPL45	1	26	ARHGAP23	17583	chr17:36642381:+	MRPL45	36816	chr17:36474586:+	ONLY_REF_SPLICE	NO	222	165	0.11	0.14	0.0123	0.3208	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	647V_URINARY_TRACT	0.11	0.14	0.3331	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	NCOA6--GSS	5	5	NCOA6	22411	chr20:33324494:-	GSS	33321	chr20:33539663:-	ONLY_REF_SPLICE	YES	58	4	0.15	0.71	0.0617	0.0617	NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6,GSS->chr20:33516236-33543620:-,glutathione_synthetase	647V_URINARY_TRACT	0.15	0.71	0.1234	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	F3--S100A6	6	0	F3	1194	chr1:95007163:-	S100A6	11318	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	647V_URINARY_TRACT	1	1	0.074	TRUE	0	0	0	3	0	TRUE	ACH-000896
647V_URINARY_TRACT	XXbac-BPG252P9.9--IFI27	4	0	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	647V_URINARY_TRACT	1	1	0.0494	TRUE	0	2	0	13	2	TRUE	ACH-000896
647V_URINARY_TRACT	CHCHD6--ALDH1L1-AS2	1	10	CHCHD6	5595	chr3:126499273:+	ALDH1L1-AS2	21398	chr3:125927169:+	ONLY_REF_SPLICE	YES	132	0	0.08	1	0.0123	0.1234	CHCHD6->chr3:126423063-126679249:+,coiled-coil-helix-coiled-coil-helix_domain_containing_6,ALDH1L1-AS2->ALDH1L1_antisense_RNA_2,chr3:125898908-125929012:+	647V_URINARY_TRACT	0.08	1	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PCSK6--RP11-505E24.2	3	2	PCSK6	13496	chr15:101922297:-	RP11-505E24.2	39748	chr15:101605869:-	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.037	0.0247	PCSK6->chr15:101840818-102065405:-,proprotein_convertase_subtilisin/kexin_type_6,RP11-505E24.2->chr15:101590937-101626271:-	647V_URINARY_TRACT	0.31	1	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	F3--S100A6	3	0	F3	1208	chr1:95007149:-	S100A6	11335	chr1:153508450:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	647V_URINARY_TRACT	1	1	0.037	TRUE	0	0	0	3	0	TRUE	ACH-000896
647V_URINARY_TRACT	LGALS3BP--KRT18	3	0	LGALS3BP	4113	chr17:76972107:-	KRT18	11877	chr12:53342918:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	647V_URINARY_TRACT	1	1	0.037	TRUE	0	0	0	9	0	TRUE	ACH-000896
647V_URINARY_TRACT	PCSK6--RP11-505E24.2	2	1	PCSK6	13496	chr15:101922297:-	RP11-505E24.2	41052	chr15:101590984:-	ONLY_REF_SPLICE	YES	11	0	0.21	1	0.0247	0.0123	PCSK6->chr15:101840818-102065405:-,proprotein_convertase_subtilisin/kexin_type_6,RP11-505E24.2->chr15:101590937-101626271:-	647V_URINARY_TRACT	0.21	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	CDCA7L--TSPAN13	2	0	CDCA7L	1304	chr7:21985399:-	TSPAN13	18570	chr7:16815836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	CDCA7L->cell_division_cycle_associated_7_like,chr7:21940518-21985702:-,TSPAN13->chr7:16793160-16824161:+,tetraspanin_13	647V_URINARY_TRACT	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	KRT7--SNHG15	2	0	KRT7	1272	chr12:52626575:+	SNHG15	20295	chr7:45023645:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	KRT7->chr12:52626304-52645970:+,keratin_7,SNHG15->chr7:45022622-45026560:-,small_nucleolar_RNA_host_gene_15	647V_URINARY_TRACT	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000896
A1207_CENTRAL_NERVOUS_SYSTEM	EPG5--PSTPIP2	72	49	EPG5	12892	chr18:43514775:-	PSTPIP2	62344	chr18:43591253:-	ONLY_REF_SPLICE	YES	33	15	0.79	0.89	1.1563	0.7869	LOCAL_REARRANGEMENT:-:[16262],EPG5->Oncogene{Bushman},chr18:43427574-43547240:-,ectopic_P-granules_autophagy_protein_5_homolog_(C._elegans),PSTPIP2->chr18:43563502-43652238:-,proline-serine-threonine_phosphatase_interacting_protein_2	A1207_CENTRAL_NERVOUS_SYSTEM	0.79	0.89	1.9432	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	ZNF106--RHOH	50	22	ZNF106	20484	chr15:42720216:-	RHOH	47837	chr4:40244334:+	ONLY_REF_SPLICE	YES	61	0	0.54	1	0.803	0.3533	ZNF106->chr15:42705021-42783321:-,zinc_finger_protein_106,RHOH->Oncogene{Bushman},chr4:40192673-40248587:+,ras_homolog_family_member_H	A1207_CENTRAL_NERVOUS_SYSTEM	0.54	1	1.1563	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CAPZB--GABPB2	18	21	CAPZB	1137	chr1:19811930:-	GABPB2	24145	chr1:151065668:+	ONLY_REF_SPLICE	YES	21	2	0.65	0.95	0.2891	0.3373	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.65	0.95	0.6264	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CAPZB--GABPB2	20	4	CAPZB	1137	chr1:19811930:-	GABPB2	25340	chr1:151070328:+	ONLY_REF_SPLICE	YES	21	21	0.53	0.53	0.3212	0.0642	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.53	0.53	0.3854	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CAPZB--GABPB2	1	21	CAPZB	2383	chr1:19810684:-	GABPB2	24145	chr1:151065668:+	ONLY_REF_SPLICE	NO	45	2	0.33	0.92	0.0161	0.3373	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.33	0.92	0.3534	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	EPG5--PSTPIP2	1	17	EPG5	11734	chr18:43519566:-	PSTPIP2	62344	chr18:43591253:-	ONLY_REF_SPLICE	YES	49	15	0.27	0.55	0.0161	0.273	LOCAL_REARRANGEMENT:-:[16262],EPG5->Oncogene{Bushman},chr18:43427574-43547240:-,ectopic_P-granules_autophagy_protein_5_homolog_(C._elegans),PSTPIP2->chr18:43563502-43652238:-,proline-serine-threonine_phosphatase_interacting_protein_2	A1207_CENTRAL_NERVOUS_SYSTEM	0.27	0.55	0.2891	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	C11orf68--DRAP1	4	0	C11orf68	1087	chr11:65686502:-	DRAP1	6880	chr11:65687297:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0642	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0642	TRUE	0	1	0	6	1	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	C11orf68--DRAP1	4	0	C11orf68	1089	chr11:65686500:-	DRAP1	6319	chr11:65686736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0642	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0642	TRUE	0	1	0	6	1	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	C11orf68--DRAP1	3	0	C11orf68	1088	chr11:65686501:-	DRAP1	6884	chr11:65687301:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0482	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0482	TRUE	0	1	0	6	1	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	APBB2--SLC30A9	2	0	APBB2	2423	chr4:41216422:-	SLC30A9	41515	chr4:42003633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-,SLC30A9->chr4:41992489-42092474:+,solute_carrier_family_30_member_9	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CALM2--CCDC132	2	0	CALM2	1161	chr2:47403580:-	CCDC132	29226	chr7:92921015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,CCDC132->chr7:92861653-92988338:+	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	HAT1--YWHAQ	2	0	HAT1	6391	chr2:172809519:+	YWHAQ	21921	chr2:9731644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	PUM2--LAPTM4A	2	0	PUM2	2307	chr2:20550358:-	LAPTM4A	33499	chr2:20240772:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,LAPTM4A->chr2:20232411-20251789:-,lysosomal_protein_transmembrane_4_alpha	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0321	TRUE	0	3	0	1	2	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	SNHG16--KANSL2	2	0	SNHG16	4633	chr17:74557480:+	KANSL2	19778	chr12:49055026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	TGM2--RSBN1L	2	0	TGM2	2360	chr20:36793591:-	RSBN1L	26387	chr7:77378741:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	TGM2->chr20:36756863-36794980:-,transglutaminase_2,RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000283
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--RUNX1T1	233	70	RUNX1	28357	chr21:36231771:-	RUNX1T1	55630	chr8:93029591:-	ONLY_REF_SPLICE	YES	96	0	0.76	1	2.6382	0.7926	Mitelman{Heart=2,Skin=11,ALL=2,AML=17},YOSHIHARA_TCGA_num_samples[LAML:7],chimerdb_omim:{acutemyelogenousleukemia},chimerdb_omim:{leukemia},chimerdb_pubmed{acute myeloid leukemia (AML), acute myelogenous leukemia,Promyelocytic leukemia (PML),acute myelocytic leukaemia,Acute myeloid leukaemia, M2 type, with dysplastic features and Auer rods, good prognosis,acute myeloid leukemia,acute myeloid leukemia, chronic myelogenous leukemia,Acute myeloid leukaemia (AML),acute myeloid leukemia with eosinophilia ,de novo cases of acute myeloid leukemia,acute myeloid leukemia(AML),Acute myeloid leukemia,pediatric acute myelogenous leukemia,Acute myelocytic leukemia(AML),AML(acute myeloid leukemia),leukemia,severalleukaemia,acute nonlymphoid leukemia,Primary granulocytic sarcoma (GS),core binding factor [CBF] leukemias,myeloid leukemia,childhood acute myeloid leukemia (AML),Acute myelogenous leukemia,myelodysplastic syndromes (MDS),acute myelocitic leukemia (AML),granulocytic sarcoma,acute myelogenous leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute myeloid leukemia (AML) ,acute myeloid leukaemia(AML),acute promyelocytic leukemia(APL),acute myelogenous leukemia (AML),AML,nonHodgkin's lymphoma (NHL),acute myelogenous leukemia ,Acute leukemia,acute myelogenous leukemia with maturation (AMLM2),acute myeloblastic leukemia,acute myelogenous leukemia(AML), minimal residual diseases (MRD),acute myelogenous leukaemia,acute myeloblastic leukaemia,acute myelogenous leukemia(AML),spinal granulocytic sarcoma,Myelomastocytic leukemia,acute myeloid leukaemia (AML),acute myeloid leukaemia,acute leukemia},{Klijn_CCL:Lymphoid=1},RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	3.4308	TRUE	0	7	0	2	7	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--RUNX1T1	12	71	RUNX1	28357	chr21:36231771:-	RUNX1T1	55562	chr8:93029659:-	ONLY_REF_SPLICE	YES	96	0	0.46	1	0.1359	0.8039	Mitelman{Heart=2,Skin=11,ALL=2,AML=17},YOSHIHARA_TCGA_num_samples[LAML:7],chimerdb_omim:{acutemyelogenousleukemia},chimerdb_omim:{leukemia},chimerdb_pubmed{acute myeloid leukemia (AML), acute myelogenous leukemia,Promyelocytic leukemia (PML),acute myelocytic leukaemia,Acute myeloid leukaemia, M2 type, with dysplastic features and Auer rods, good prognosis,acute myeloid leukemia,acute myeloid leukemia, chronic myelogenous leukemia,Acute myeloid leukaemia (AML),acute myeloid leukemia with eosinophilia ,de novo cases of acute myeloid leukemia,acute myeloid leukemia(AML),Acute myeloid leukemia,pediatric acute myelogenous leukemia,Acute myelocytic leukemia(AML),AML(acute myeloid leukemia),leukemia,severalleukaemia,acute nonlymphoid leukemia,Primary granulocytic sarcoma (GS),core binding factor [CBF] leukemias,myeloid leukemia,childhood acute myeloid leukemia (AML),Acute myelogenous leukemia,myelodysplastic syndromes (MDS),acute myelocitic leukemia (AML),granulocytic sarcoma,acute myelogenous leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute myeloid leukemia (AML) ,acute myeloid leukaemia(AML),acute promyelocytic leukemia(APL),acute myelogenous leukemia (AML),AML,nonHodgkin's lymphoma (NHL),acute myelogenous leukemia ,Acute leukemia,acute myelogenous leukemia with maturation (AMLM2),acute myeloblastic leukemia,acute myelogenous leukemia(AML), minimal residual diseases (MRD),acute myelogenous leukaemia,acute myeloblastic leukaemia,acute myelogenous leukemia(AML),spinal granulocytic sarcoma,Myelomastocytic leukemia,acute myeloid leukaemia (AML),acute myeloid leukaemia,acute leukemia},{Klijn_CCL:Lymphoid=1},RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	0.9398	TRUE	0	7	0	2	7	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHP1--FAM189A1	14	6	CHP1	8348	chr15:41562816:+	FAM189A1	20075	chr15:29674035:-	ONLY_REF_SPLICE	YES	35	1	0.36	0.95	0.1585	0.0679	CHP1->calcineurin_like_EF-hand_protein_1,chr15:41523037-41574043:+,FAM189A1->chr15:29412457-29862927:-,family_with_sequence_similarity_189_member_A1	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.95	0.2264	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TBCA	3	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	3	0	7	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AAMP--MRPL47	2	0	AAMP	1876	chr2:219134105:-	MRPL47	11499	chr3:179319578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	AAMP->angio_associated_migratory_cell_protein,chr2:219128850-219134980:-,MRPL47->chr3:179306073-179322442:-,mitochondrial_ribosomal_protein_L47	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARID1B--WDR27	2	0	ARID1B	8327	chr6:157256710:+	WDR27	74120	chr6:169857729:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,WDR27->WD_repeat_domain_27,chr6:169857307-170102159:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATRX--MED14	2	0	ATRX	35890	chrX:76812922:-	MED14	51878	chrX:40573962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,MED14->chrX:40507558-40595110:-,mediator_complex_subunit_14	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRAF--SRPK2	2	0	BRAF	14964	chr7:140476712:-	SRPK2	41282	chr7:104844232:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	BRAF->ArcherDX_panel,B-Raf_proto-oncogene,_serine/threonine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:140419127-140624564:-,SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BTAF1--IDE	2	0	BTAF1	26785	chr10:93768032:+	IDE	63961	chr10:94235751:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},BTAF1->B-TFIID_TATA-box_binding_protein_associated_factor_1,chr10:93683526-93790082:+,IDE->chr10:94211441-94333833:-,insulin_degrading_enzyme	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BTBD7--OSTC	2	0	BTBD7	1273	chr14:93799166:-	OSTC	28720	chr4:109576720:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-,OSTC->chr4:109571740-109588976:+,oligosaccharyltransferase_complex_subunit_(non-catalytic)	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf25--FAM156A	2	0	C19orf25	1783	chr19:1478773:-	FAM156A	17703	chrX:52985544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,FAM156A->chrX:52976462-53024651:-,family_with_sequence_similarity_156_member_A	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMTM7--STT3B	2	0	CMTM7	2569	chr3:32483505:+	STT3B	19364	chr3:31656597:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDB2--CKAP5	2	0	DDB2	3036	chr11:47238600:+	CKAP5	24726	chr11:46818490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2,CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FANCA--EDF1	2	0	FANCA	16080	chr16:89849267:-	EDF1	44865	chr9:139758323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-,EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO42--SFPQ	2	0	FBXO42	1200	chr1:16678750:-	SFPQ	33396	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB2--NARS2	2	0	GAB2	1703	chr11:78128692:-	NARS2	31929	chr11:78204241:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[17613],GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRIPAP1--HP1BP3	2	0	GRIPAP1	18642	chrX:48832430:-	HP1BP3	30947	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GRIPAP1->GRIP1_associated_protein_1,chrX:48830134-48858675:-,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LRRC8D--ZNF644	2	0	LRRC8D	4992	chr1:90309341:+	ZNF644	20044	chr1:91406866:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	LRRC8D->chr1:90286573-90402170:+,leucine-rich_repeat_containing_8_family_member_D,ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED17--ATAD5	2	0	MED17	5500	chr11:93523959:+	ATAD5	33414	chr17:29183973:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MED17->chr11:93517393-93547861:+,mediator_complex_subunit_17,ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MS4A14--B3GALNT2	2	0	MS4A14	1135	chr11:60146137:+	B3GALNT2	24151	chr1:235629031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MS4A14->chr11:60146003-60185161:+,membrane_spanning_4-domains_A14,B3GALNT2->beta-1,3-N-acetylgalactosaminyltransferase_2,chr1:235613238-235667781:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTF2--FCAR	2	0	MTF2	1297	chr1:93545088:+	FCAR	23316	chr19:55396647:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,FCAR->Fc_fragment_of_IgA_receptor,chr19:55385704-55401838:+	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NHLRC3--PTK2	2	0	NHLRC3	2406	chr13:39613848:+	PTK2	64374	chr8:141684503:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NHLRC3->NHL_repeat_containing_3,chr13:39612443-39624246:+,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NKTR--TMEM165	2	0	NKTR	15451	chr3:42674315:+	TMEM165	43088	chr4:56290705:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NKTR->chr3:42642106-42690227:+,natural_killer_cell_triggering_receptor,TMEM165->chr4:56262124-56319564:+,transmembrane_protein_165	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR1--RASA2	2	0	PLSCR1	1398	chr3:146262254:-	RASA2	19055	chr3:141231005:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1,RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PNISR--CCNL2	2	0	PNISR	5163	chr6:99860427:-	CCNL2	27468	chr1:1326245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,CCNL2->chr1:1321091-1334708:-,cyclin_L2	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRAM1--CSNK1D	2	0	PRAM1	1548	chr19:8567449:-	CSNK1D	14432	chr17:80223672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PRAM1->PML-RARA_regulated_adaptor_molecule_1,chr19:8554940-8567996:-,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRA--DDRGK1	2	0	PTPRA	12273	chr20:2969120:+	DDRGK1	33485	chr20:3175999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,DDRGK1->DDRGK_domain_containing_1,chr20:3170996-3185331:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PXN-AS1--RNF10	2	0	PXN-AS1	1136	chr12:120639229:+	RNF10	24064	chr12:121004628:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PXN-AS1->PXN_antisense_RNA_1,chr12:120639094-120650941:+,RNF10->chr12:120971283-121015397:+,ring_finger_protein_10	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL5--DR1	2	0	RPL5	2636	chr1:93299217:+	DR1	13560	chr1:93819465:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL5--UBB	2	0	RPL5	1093	chr1:93297674:+	UBB	12686	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,UBB->chr17:16284112-16286059:+,ubiquitin_B	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX2--POLH	2	0	RUNX2	8095	chr6:45405788:+	POLH	24483	chr6:43550053:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RUNX2->Oncogene{Bushman},chr6:45295894-45632086:+,runt_related_transcription_factor_2,POLH->Oncogene{Bushman},chr6:43543887-43586701:+,polymerase_(DNA)_eta	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG8--NOM1	2	0	SNHG8	1429	chr4:119200292:+	NOM1	17438	chr7:156761781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,NOM1->chr7:156742417-156765876:+,nucleolar_protein_with_MIF4G_domain_1	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TJAP1--RRN3P1	2	0	TJAP1	9770	chr6:43471444:+	RRN3P1	17270	chr16:21830082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	TJAP1->chr6:43445261-43474294:+,tight_junction_associated_protein_1,RRN3P1->RRN3_homolog,_RNA_polymerase_I_transcription_factor_pseudogene_1,chr16:21807951-21831731:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSSK3--PPIEL	2	0	TSSK3	2919	chr1:32819142:+	PPIEL	14870	chr1:40007513:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	TSSK3->chr1:32817122-32829913:+,testis_specific_serine_kinase_3,PPIEL->chr1:39997510-40024379:-,peptidylprolyl_isomerase_E_like_pseudogene	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNRD2--NOL12	2	0	TXNRD2	13999	chr22:19882930:-	NOL12	48040	chr22:38147779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2,NOL12->chr22:38077680-38170137:+,nucleolar_protein_12	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE3C--EIF4A2	2	0	UBE3C	27669	chr7:157049738:+	EIF4A2	39378	chr3:186506914:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C,EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELF1--ITFG1	1	1	ELF1	1603	chr13:41634974:-	ITFG1	27529	chr16:47462809:-	ONLY_REF_SPLICE	YES	10	15	0.17	0.12	0.0113	0.0113	ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.17	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELF1--ITFG1	1	1	ELF1	1603	chr13:41634974:-	ITFG1	31307	chr16:47409851:-	ONLY_REF_SPLICE	YES	10	19	0.17	0.1	0.0113	0.0113	ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.17	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
CAPAN2_PANCREAS	PFDN2--B4GALT3	214	13	PFDN2	1160	chr1:161087742:-	B4GALT3	7711	chr1:161146369:-	ONLY_REF_SPLICE	YES	12	16	0.95	0.93	1.7939	0.109	LOCAL_REARRANGEMENT:-:[53199],PFDN2->chr1:161070346-161087901:-,prefoldin_subunit_2,B4GALT3->beta-1,4-galactosyltransferase_3,chr1:161141100-161147287:-	CAPAN2_PANCREAS	0.93	0.95	1.9029	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	UPK3B--PMS2P2	9	302	UPK3B	9229	chr7:76648314:+	PMS2P2	13966	chr7:74984929:-	INCL_NON_REF_SPLICE	YES	0	5	1	0.98	0.0754	2.5316	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P2->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_2,chr7:74880905-74988262:-	CAPAN2_PANCREAS	0.98	1	2.607	TRUE	0	2	0	1	2	TRUE	ACH-000107
CAPAN2_PANCREAS	SMARCC1--LCN2	49	0	SMARCC1	30620	chr3:47651556:-	LCN2	39245	chr9:130911762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4108	0	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,LCN2->chr9:130911350-130915734:+,lipocalin_2	CAPAN2_PANCREAS	1	1	0.4108	TRUE	0	0	0	2	0	TRUE	ACH-000107
CAPAN2_PANCREAS	UPK3B--PMS2P2	33	0	UPK3B	7014	chr7:76157169:+	PMS2P2	18745	chr7:74973330:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2766	0	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P2->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_2,chr7:74880905-74988262:-	CAPAN2_PANCREAS	1	1	0.2766	TRUE	1	8	0	1	8	TRUE	ACH-000107
CAPAN2_PANCREAS	UPK3B--PMS2P2	22	2	UPK3B	2455	chr7:76141199:+	PMS2P2	13966	chr7:74984929:-	ONLY_REF_SPLICE	YES	339	5	0.07	0.83	0.1844	0.0168	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P2->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_2,chr7:74880905-74988262:-	CAPAN2_PANCREAS	0.07	0.83	0.2012	TRUE	1	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	CELF1--RP11-574M7.1	15	5	CELF1	1296	chr11:47586826:-	RP11-574M7.1	39622	chr11:50320146:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1257	0.0419	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,RP11-574M7.1->chr11:50266852-50320877:+	CAPAN2_PANCREAS	0.95	1	0.1676	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	RP11-471M2.3--MIR4500HG	14	1	RP11-471M2.3	1749	chr13:88462739:-	MIR4500HG	11306	chr13:88268010:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1174	0.0084	RP11-471M2.3->chr13:88459889-88463487:-,MIR4500HG->MIR4500_host_gene,chr13:88079469-88323514:-	CAPAN2_PANCREAS	0.94	1	0.1258	TRUE	0	1	0	1	1	TRUE	ACH-000107
CAPAN2_PANCREAS	UPK3B--PMS2P2	13	2	UPK3B	2455	chr7:76141199:+	PMS2P2	13971	chr7:74984924:-	INCL_NON_REF_SPLICE	YES	339	5	0.04	0.75	0.109	0.0168	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P2->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_2,chr7:74880905-74988262:-	CAPAN2_PANCREAS	0.04	0.75	0.1258	TRUE	1	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	CELF1--RP11-574M7.1	8	5	CELF1	1296	chr11:47586826:-	RP11-574M7.1	39619	chr11:50320143:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0671	0.0419	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,RP11-574M7.1->chr11:50266852-50320877:+	CAPAN2_PANCREAS	0.93	1	0.109	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	B3GNT3--FCHO1	7	0	B3GNT3	1379	chr19:17906015:+	FCHO1	31513	chr19:17897383:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0587	0	LOCAL_REARRANGEMENT:+:[6260],B3GNT3->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_3,chr19:17905637-17923891:+,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	CAPAN2_PANCREAS	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	PFDN2--B4GALT3	4	7	PFDN2	1160	chr1:161087742:-	B4GALT3	7782	chr1:161146298:-	ONLY_REF_SPLICE	YES	12	102	0.48	0.1	0.0335	0.0587	LOCAL_REARRANGEMENT:-:[53199],PFDN2->chr1:161070346-161087901:-,prefoldin_subunit_2,B4GALT3->beta-1,4-galactosyltransferase_3,chr1:161141100-161147287:-	CAPAN2_PANCREAS	0.1	0.48	0.0922	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	UPK3B--PMS2P2	3	10	UPK3B	5781	chr7:76144726:+	PMS2P2	17656	chr7:74978010:-	INCL_NON_REF_SPLICE	YES	41	0	0.24	1	0.0251	0.0838	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P2->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_2,chr7:74880905-74988262:-	CAPAN2_PANCREAS	0.24	1	0.1089	TRUE	0	8	0	1	8	TRUE	ACH-000107
CAPAN2_PANCREAS	UPK3B--PMS2P2	5	0	UPK3B	4448	chr7:76143393:+	PMS2P2	17656	chr7:74978010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0419	0	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P2->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_2,chr7:74880905-74988262:-	CAPAN2_PANCREAS	1	1	0.0419	TRUE	0	10	0	1	7	TRUE	ACH-000107
CAPAN2_PANCREAS	RP11-471M2.3--MIR4500HG	4	0	RP11-471M2.3	1749	chr13:88462739:-	MIR4500HG	13711	chr13:88237335:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	RP11-471M2.3->chr13:88459889-88463487:-,MIR4500HG->MIR4500_host_gene,chr13:88079469-88323514:-	CAPAN2_PANCREAS	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	CTC-518B2.12--PTMA	3	0	CTC-518B2.12	1338	chr19:51517967:+	PTMA	9880	chr2:232577152:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	CTC-518B2.12->chr19:51517630-51517990:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CAPAN2_PANCREAS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	CD2AP--LRRC1	2	0	CD2AP	12794	chr6:47549801:+	LRRC1	29034	chr6:53706908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	CD2AP->CD2-associated_protein,chr6:47445525-47594999:+,LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1	CAPAN2_PANCREAS	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	R3HDM2--SRSF4	2	0	R3HDM2	8772	chr12:57691873:-	SRSF4	38143	chr1:29485998:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4	CAPAN2_PANCREAS	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	ZDHHC2--MTUS1	2	0	ZDHHC2	1825	chr8:17014362:+	MTUS1	45316	chr8:17542051:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},ZDHHC2->chr8:17013538-17082308:+,zinc_finger_DHHC-type_containing_2,MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1	CAPAN2_PANCREAS	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	CELF1--RP11-574M7.1	1	2	CELF1	1296	chr11:47586826:-	RP11-574M7.1	40186	chr11:50320710:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0084	0.0168	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,RP11-574M7.1->chr11:50266852-50320877:+	CAPAN2_PANCREAS	0.75	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000107
T24_URINARY_TRACT	ACTG1--NPLOC4	65	36	ACTG1	3555	chr17:79479646:-	NPLOC4	21433	chr17:79567453:-	INCL_NON_REF_SPLICE	YES	64	162	0.61	0.38	0.7563	0.4189	LOCAL_REARRANGEMENT:-:[33040],ACTG1->actin_gamma_1,chr17:79476997-79490873:-,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	T24_URINARY_TRACT	0.38	0.61	1.1752	TRUE	0	1	0	1	1	TRUE	ACH-000018
T24_URINARY_TRACT	PLXNB2--MT2A	9	0	PLXNB2	4885	chr22:50728393:-	MT2A	23273	chr16:56642513:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1047	0	PLXNB2->chr22:50713408-50746056:-,plexin_B2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	T24_URINARY_TRACT	1	1	0.1047	TRUE	0	0	0	5	0	TRUE	ACH-000018
T24_URINARY_TRACT	TXNL4A--RP11-370A5.1	7	4	TXNL4A	6150	chr18:77746602:-	RP11-370A5.1	24066	chr18:20303712:-	ONLY_REF_SPLICE	YES	135	0	0.08	1	0.0814	0.0465	TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A,RP11-370A5.1->chr18:20303454-20487684:-	T24_URINARY_TRACT	0.08	1	0.1279	TRUE	0	0	0	1	0	TRUE	ACH-000018
T24_URINARY_TRACT	KRT7--TUBA1C	6	0	KRT7	1809	chr12:52627112:+	TUBA1C	26832	chr12:49666110:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0	KRT7->chr12:52626304-52645970:+,keratin_7,TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c	T24_URINARY_TRACT	1	1	0.0698	TRUE	0	0	0	4	0	TRUE	ACH-000018
T24_URINARY_TRACT	ADIRF-AS1--LGALS1	5	1	ADIRF-AS1	3782	chr10:88728287:-	LGALS1	10007	chr22:38071654:+	INCL_NON_REF_SPLICE	YES	14	0	0.3	1	0.0582	0.0116	ADIRF-AS1->ADIRF_antisense_RNA_1,chr10:88725102-88731068:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	T24_URINARY_TRACT	0.3	1	0.0698	TRUE	0	0	0	5	0	TRUE	ACH-000018
T24_URINARY_TRACT	TXNL4A--RP11-370A5.1	4	1	TXNL4A	5001	chr18:77748240:-	RP11-370A5.1	24066	chr18:20303712:-	ONLY_REF_SPLICE	YES	110	0	0.04	1	0.0465	0.0116	TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A,RP11-370A5.1->chr18:20303454-20487684:-	T24_URINARY_TRACT	0.04	1	0.0581	TRUE	0	0	0	1	0	TRUE	ACH-000018
T24_URINARY_TRACT	AC005540.3--LDHA	3	2	AC005540.3	2138	chr2:191745648:-	LDHA	5439	chr11:18416110:+	INCL_NON_REF_SPLICE	YES	2	6	0.71	0.45	0.0349	0.0233	AC005540.3->chr2:191745523-191746785:-,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	T24_URINARY_TRACT	0.45	0.71	0.0582	TRUE	0	0	0	3	0	TRUE	ACH-000018
T24_URINARY_TRACT	ASXL1--TRPC4AP	2	0	ASXL1	6650	chr20:30956926:+	TRPC4AP	29037	chr20:33637797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ASXL1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},additional_sex_combs_like_1,_transcriptional_regulator,chr20:30946155-31027122:+,TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein	T24_URINARY_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000018
T24_URINARY_TRACT	USP10--COTL1	2	0	USP10	1134	chr16:84733717:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	T24_URINARY_TRACT	1	1	0.0233	TRUE	0	0	0	7	0	TRUE	ACH-000018
T24_URINARY_TRACT	ZEB1--GNAS	2	0	ZEB1	1798	chr10:31608221:+	GNAS	44891	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	T24_URINARY_TRACT	1	1	0.0233	TRUE	0	1	0	2	1	TRUE	ACH-000018
PC3_PROSTATE	SAMD8--ADK	164	44	SAMD8	2395	chr10:76871480:+	ADK	25355	chr10:76285014:+	ONLY_REF_SPLICE	YES	8	650	0.96	0.24	2.3087	0.6194	SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,ADK->adenosine_kinase,chr10:75910960-76469061:+	PC3_PROSTATE	0.24	0.96	2.9281	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	KDM5B--RP11-547I7.2	137	71	KDM5B	22316	chr1:202714986:-	RP11-547I7.2	39233	chr1:190449475:+	ONLY_REF_SPLICE	YES	16	2	0.93	0.99	1.9286	0.9995	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,RP11-547I7.2->chr1:190447681-190449865:+	PC3_PROSTATE	0.93	0.99	2.9281	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MIER2--PPFIA3	118	30	MIER2	2111	chr19:340514:-	PPFIA3	33009	chr19:49644677:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.6611	0.4223	MIER2->MIER_family_member_2,chr19:305575-344798:-,PPFIA3->PTPRF_interacting_protein_alpha_3,chr19:49622646-49654283:+	PC3_PROSTATE	1	1	2.0834	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	SAMD8--ADK	100	25	SAMD8	2395	chr10:76871480:+	ADK	28066	chr10:76349040:+	ONLY_REF_SPLICE	YES	8	801	0.94	0.13	1.4077	0.3519	SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,ADK->adenosine_kinase,chr10:75910960-76469061:+	PC3_PROSTATE	0.13	0.94	1.7596	TRUE	0	0	0	2	0	TRUE	ACH-000090
PC3_PROSTATE	SAMD8--ADK	74	106	SAMD8	2451	chr10:76871536:+	ADK	25355	chr10:76285014:+	ONLY_REF_SPLICE	YES	39	650	0.82	0.22	1.0417	1.4922	SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,ADK->adenosine_kinase,chr10:75910960-76469061:+	PC3_PROSTATE	0.22	0.82	2.5339	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	SAMD8--ADK	64	57	SAMD8	2451	chr10:76871536:+	ADK	28066	chr10:76349040:+	ONLY_REF_SPLICE	YES	39	801	0.76	0.13	0.901	0.8024	SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,ADK->adenosine_kinase,chr10:75910960-76469061:+	PC3_PROSTATE	0.13	0.76	1.7034	TRUE	0	0	0	2	0	TRUE	ACH-000090
PC3_PROSTATE	NUMB--DPF3	67	1	NUMB	5521	chr14:73925199:-	DPF3	49092	chr14:73141076:-	ONLY_REF_SPLICE	YES	0	37	1	0.65	0.9432	0.0141	NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	PC3_PROSTATE	0.65	1	0.9573	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	PUS7--CTB-111H14.1	33	19	PUS7	1216	chr7:105162499:-	CTB-111H14.1	36078	chr7:106106382:-	ONLY_REF_SPLICE	YES	90	0	0.37	1	0.4646	0.2675	PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative),CTB-111H14.1->chr7:106012697-106410653:-	PC3_PROSTATE	0.37	1	0.7321	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	CAMK2G--KIAA1279	30	12	CAMK2G	12239	chr10:75597226:-	KIAA1279	34714	chr10:70770656:+	ONLY_REF_SPLICE	YES	162	98	0.21	0.3	0.4223	0.1689	CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-,KIAA1279->chr10:70748487-70776738:+	PC3_PROSTATE	0.21	0.3	0.5912	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	PLOD2--IQCJ	28	19	PLOD2	2347	chr3:145878668:-	IQCJ	30890	chr3:158963632:+	ONLY_REF_SPLICE	YES	85	0	0.36	1	0.3942	0.2675	PLOD2->chr3:145787227-145881440:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_2,IQCJ->IQ_motif_containing_J,chr3:158680717-158984096:+	PC3_PROSTATE	0.36	1	0.6617	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	SIL1--AC034243.1	27	9	SIL1	21983	chr5:138356860:-	AC034243.1	30812	chr5:138080451:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.3801	0.1267	SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,AC034243.1->chr5:138080123-138088998:-	PC3_PROSTATE	0.97	1	0.5068	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	PLOD2--IQCJ	19	27	PLOD2	2439	chr3:145878576:-	IQCJ	30890	chr3:158963632:+	ONLY_REF_SPLICE	YES	105	0	0.3	1	0.2675	0.3801	PLOD2->chr3:145787227-145881440:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_2,IQCJ->IQ_motif_containing_J,chr3:158680717-158984096:+	PC3_PROSTATE	0.3	1	0.6476	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	PTEN--METTL18	16	11	PTEN	4898	chr10:89653866:+	METTL18	24118	chr1:169763038:-	ONLY_REF_SPLICE	YES	1	6	0.96	0.82	0.2252	0.1549	PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog,METTL18->chr1:169761670-169764107:-,methyltransferase_like_18	PC3_PROSTATE	0.82	0.96	0.3801	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	PLEKHA6--ASAH2B	13	7	PLEKHA6	3218	chr1:204336927:-	ASAH2B	42918	chr10:52565853:+	ONLY_REF_SPLICE	YES	13	0	0.61	1	0.183	0.0985	PLEKHA6->chr1:204187979-204346793:-,pleckstrin_homology_domain_containing_A6,ASAH2B->N-acylsphingosine_amidohydrolase_(non-lysosomal_ceramidase)_2B,chr10:52499078-52576255:+	PC3_PROSTATE	0.61	1	0.2815	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	ZMIZ1--CTNNA3	7	5	ZMIZ1	10069	chr10:81037082:+	CTNNA3	52577	chr10:68040379:-	ONLY_REF_SPLICE	YES	36	0	0.25	1	0.0985	0.0704	GTEx&tcga_normals:1/3694=0.03%,ZMIZ1->Oncogene{Bushman},chr10:80828792-81076276:+,zinc_finger_MIZ-type_containing_1,CTNNA3->catenin_alpha_3,chr10:67672276-69455927:-	PC3_PROSTATE	0.25	1	0.1689	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	SIL1--AC034243.1	4	9	SIL1	21987	chr5:138356856:-	AC034243.1	30812	chr5:138080451:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0563	0.1267	SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,AC034243.1->chr5:138080123-138088998:-	PC3_PROSTATE	0.93	1	0.183	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	TTC37--ARSK	6	0	TTC37	2304	chr5:94886285:-	ARSK	46699	chr5:94901702:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0845	0	LOCAL_INVERSION:-:+:[67],TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,ARSK->arylsulfatase_family_member_K,chr5:94890778-94940768:+	PC3_PROSTATE	1	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	CCSER1--MMRN1	4	0	CCSER1	1297	chr4:91048982:+	MMRN1	41500	chr4:90815875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0563	0	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	PC3_PROSTATE	1	1	0.0563	TRUE	0	3	0	5	3	TRUE	ACH-000090
PC3_PROSTATE	IPO11--RANBP17	2	1	IPO11	37673	chr5:61887499:+	RANBP17	79130	chr5:170648762:+	ONLY_REF_SPLICE	YES	25	4	0.11	0.43	0.0282	0.0141	IPO11->chr5:61699799-61924409:+,importin_11,RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+	PC3_PROSTATE	0.11	0.43	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	IPO11--RANBP17	1	5	IPO11	37673	chr5:61887499:+	RANBP17	72429	chr5:170610326:+	ONLY_REF_SPLICE	NO	25	1	0.19	0.86	0.0141	0.0704	IPO11->chr5:61699799-61924409:+,importin_11,RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+	PC3_PROSTATE	0.19	0.86	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	IPO11--RANBP17	1	5	IPO11	37673	chr5:61887499:+	RANBP17	72302	chr5:170610199:+	ONLY_REF_SPLICE	NO	25	1	0.19	0.86	0.0141	0.0704	IPO11->chr5:61699799-61924409:+,importin_11,RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+	PC3_PROSTATE	0.19	0.86	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	PLEKHA6--ASAH2B	1	5	PLEKHA6	2160	chr1:204340658:-	ASAH2B	42918	chr10:52565853:+	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0141	0.0704	PLEKHA6->chr1:204187979-204346793:-,pleckstrin_homology_domain_containing_A6,ASAH2B->N-acylsphingosine_amidohydrolase_(non-lysosomal_ceramidase)_2B,chr10:52499078-52576255:+	PC3_PROSTATE	0.38	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	SH3TC2--IPO11	2	1	SH3TC2	24929	chr5:148386444:-	IPO11	49544	chr5:61778928:+	ONLY_REF_SPLICE	YES	18	17	0.14	0.15	0.0282	0.0141	{Klijn_CCL:Other=1},SH3TC2->SH3_domain_and_tetratricopeptide_repeats_2,chr5:148303202-148442726:-,IPO11->chr5:61699799-61924409:+,importin_11	PC3_PROSTATE	0.14	0.15	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	ATL1--CTD-2213F21.2	2	0	ATL1	5521	chr14:51054796:+	CTD-2213F21.2	27430	chr14:31914850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ATL1->atlastin_GTPase_1,chr14:50999227-51099786:+,CTD-2213F21.2->chr14:31889492-31922089:+	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	ATL1--CTD-2213F21.2	2	0	ATL1	5521	chr14:51054796:+	CTD-2213F21.2	26152	chr14:31908878:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ATL1->atlastin_GTPase_1,chr14:50999227-51099786:+,CTD-2213F21.2->chr14:31889492-31922089:+	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	DHCR24--ZMYM4	2	0	DHCR24	2757	chr1:55349291:-	ZMYM4	23846	chr1:35846860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-,ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	EPB41L2--MAPK9	2	0	EPB41L2	1168	chr6:131384295:-	MAPK9	43565	chr5:179707608:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	EPB41L2->chr6:131160487-131384462:-,erythrocyte_membrane_protein_band_4.1_like_2,MAPK9->Oncogene{Bushman},chr5:179660143-179719099:-,mitogen-activated_protein_kinase_9	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	FER--SLIT3	2	0	FER	20079	chr5:108295048:+	SLIT3	42920	chr5:168678463:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	FER->FER_tyrosine_kinase,chr5:108083523-108532542:+,SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	NDUFA1--F8	2	0	NDUFA1	2617	chrX:119007356:+	F8	26824	chrX:154134848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	NDUFA1->NADH:ubiquinone_oxidoreductase_subunit_A1,chrX:119005450-119010625:+,F8->chrX:154064063-154255215:-,coagulation_factor_VIII	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	PPIP5K2--CHSY3	2	0	PPIP5K2	18250	chr5:102495032:+	CHSY3	54166	chr5:129519922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	PPIP5K2->chr5:102455853-102548500:+,diphosphoinositol_pentakisphosphate_kinase_2,CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	RAD51B--COX16	2	0	RAD51B	11638	chr14:68353921:+	COX16	41309	chr14:70809446:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+,COX16->COX16_cytochrome_c_oxidase_assembly_homolog,chr14:70791798-70826448:-	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	RBL1--NPEPPS	2	0	RBL1	1223	chr20:35724176:-	NPEPPS	57742	chr17:45697103:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1,NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	RNF10--RP1-317E23.3	2	0	RNF10	17704	chr12:121009094:+	RP1-317E23.3	26672	chr1:26144204:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,RP1-317E23.3->chr1:26143240-26146263:-	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	ZBTB25--RHOJ	2	0	ZBTB25	5948	chr14:64957079:-	RHOJ	26940	chr14:63757596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ZBTB25->chr14:64915824-64971931:-,zinc_finger_and_BTB_domain_containing_25,RHOJ->chr14:63670832-63759937:+,ras_homolog_family_member_J	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	C1orf170--MIB2	1	2	C1orf170	5380	chr1:911879:-	MIB2	10774	chr1:1551888:+	ONLY_REF_SPLICE	YES	1	39	0.75	0.07	0.0141	0.0282	C1orf170->chr1:910579-917497:-,MIB2->Oncogene{Bushman},chr1:1550795-1565990:+,mindbomb_E3_ubiquitin_protein_ligase_2	PC3_PROSTATE	0.07	0.75	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	C14orf159--NUMB	1	1	C14orf159	1372	chr14:91527048:+	NUMB	43424	chr14:73876776:-	ONLY_REF_SPLICE	YES	1	1	0.67	0.67	0.0141	0.0141	C14orf159->chr14:91526677-91691976:+,chromosome_14_open_reading_frame_159,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	PC3_PROSTATE	0.67	0.67	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	FAF1--AGBL4	1	1	FAF1	9453	chr1:51121114:-	AGBL4	31364	chr1:50317190:-	ONLY_REF_SPLICE	NO	17	0	0.11	1	0.0141	0.0141	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	PC3_PROSTATE	0.11	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MIER2--PPFIA3	1	1	MIER2	2111	chr19:340514:-	PPFIA3	35850	chr19:49649200:+	ONLY_REF_SPLICE	NO	0	43	1	0.04	0.0141	0.0141	MIER2->MIER_family_member_2,chr19:305575-344798:-,PPFIA3->PTPRF_interacting_protein_alpha_3,chr19:49622646-49654283:+	PC3_PROSTATE	0.04	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
OE19_OESOPHAGUS	PHF12--GRB7	879	292	PHF12	2707	chr17:27277083:-	GRB7	28882	chr17:37898505:+	ONLY_REF_SPLICE	YES	83	2175	0.93	0.35	9.5013	3.1563	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	OE19_OESOPHAGUS	0.35	0.93	12.6576	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	506	517	PHF12	2707	chr17:27277083:-	MYO18A	42710	chr17:27442858:-	ONLY_REF_SPLICE	YES	83	101	0.92	0.91	5.4694	5.5883	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.91	0.92	11.0577	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	DDX23--RP11-554L12.1	561	269	DDX23	4063	chr12:49239357:-	RP11-554L12.1	19349	chr12:39486484:-	ONLY_REF_SPLICE	YES	103	2	0.89	1	6.0639	2.9077	DDX23->DEAD-box_helicase_23,chr12:49223547-49246625:-,RP11-554L12.1->chr12:39481515-39486676:-	OE19_OESOPHAGUS	0.89	1	8.9716	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	336	530	PHF12	2707	chr17:27277083:-	MYO18A	42095	chr17:27443473:-	ONLY_REF_SPLICE	YES	83	86	0.91	0.91	3.6319	5.7289	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.91	0.91	9.3608	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	239	138	SREBF2	12729	chr22:42281015:+	DBF4B	39693	chr17:42818769:+	ONLY_REF_SPLICE	YES	181	17	0.68	0.96	2.5834	1.4917	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.68	0.96	4.0751	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	HAP1--FKBP10	208	91	HAP1	4916	chr17:39884453:-	FKBP10	18035	chr17:39973310:+	ONLY_REF_SPLICE	YES	8	48	0.97	0.86	2.2483	0.9836	LOCAL_INVERSION:-:+:[78036],HAP1->chr17:39873994-39890896:-,huntingtin-associated_protein_1,FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+	OE19_OESOPHAGUS	0.86	0.97	3.2319	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	195	100	SREBF2	12729	chr22:42281015:+	DBF4B	40745	chr17:42824451:+	ONLY_REF_SPLICE	YES	181	19	0.62	0.94	2.1078	1.0809	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.62	0.94	3.1887	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--GRB7	103	349	PHF12	2707	chr17:27277083:-	GRB7	25670	chr17:37894223:+	INCL_NON_REF_SPLICE	YES	83	0	0.84	1	1.1133	3.7724	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	OE19_OESOPHAGUS	0.84	1	4.8857	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	13	530	PHF12	3104	chr17:27276686:-	MYO18A	42095	chr17:27443473:-	ONLY_REF_SPLICE	YES	55	86	0.91	0.86	0.1405	5.7289	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.86	0.91	5.8694	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	8	538	PHF12	4171	chr17:27271521:-	MYO18A	42095	chr17:27443473:-	ONLY_REF_SPLICE	YES	42	86	0.93	0.86	0.0865	5.8153	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.86	0.93	5.9018	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	8	530	PHF12	3108	chr17:27276682:-	MYO18A	42095	chr17:27443473:-	INCL_NON_REF_SPLICE	YES	55	86	0.91	0.86	0.0865	5.7289	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.86	0.91	5.8154	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	9	517	PHF12	3104	chr17:27276686:-	MYO18A	42710	chr17:27442858:-	ONLY_REF_SPLICE	YES	55	101	0.91	0.84	0.0973	5.5883	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.84	0.91	5.6856	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	2	524	PHF12	4171	chr17:27271521:-	MYO18A	42710	chr17:27442858:-	ONLY_REF_SPLICE	YES	42	101	0.93	0.84	0.0216	5.664	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.84	0.93	5.6856	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--GRB7	34	318	PHF12	2707	chr17:27277083:-	GRB7	25730	chr17:37894283:+	INCL_NON_REF_SPLICE	YES	83	9	0.81	0.98	0.3675	3.4373	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	OE19_OESOPHAGUS	0.81	0.98	3.8048	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	96	45	PHF12	2707	chr17:27277083:-	MYO18A	44453	chr17:27441115:-	ONLY_REF_SPLICE	YES	83	351	0.63	0.29	1.0377	0.4864	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.29	0.63	1.5241	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--GRB7	23	294	PHF12	2707	chr17:27277083:-	GRB7	27818	chr17:37896371:+	INCL_NON_REF_SPLICE	YES	83	2420	0.79	0.12	0.2486	3.1779	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	OE19_OESOPHAGUS	0.12	0.79	3.4265	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--GRB7	9	294	PHF12	2707	chr17:27277083:-	GRB7	27814	chr17:37896367:+	INCL_NON_REF_SPLICE	YES	83	2421	0.78	0.11	0.0973	3.1779	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	OE19_OESOPHAGUS	0.11	0.78	3.2752	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--GRB7	7	295	PHF12	2707	chr17:27277083:-	GRB7	27754	chr17:37896307:+	INCL_NON_REF_SPLICE	YES	83	2467	0.78	0.11	0.0757	3.1887	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	OE19_OESOPHAGUS	0.11	0.78	3.2644	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	HAP1--FKBP10	33	116	HAP1	5355	chr17:39884014:-	FKBP10	18035	chr17:39973310:+	ONLY_REF_SPLICE	YES	7	48	0.96	0.76	0.3567	1.2539	LOCAL_INVERSION:-:+:[78036],HAP1->chr17:39873994-39890896:-,huntingtin-associated_protein_1,FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+	OE19_OESOPHAGUS	0.76	0.96	1.6106	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	WDTC1--DYM	47	29	WDTC1	2583	chr1:27587593:+	DYM	43555	chr18:46812986:-	ONLY_REF_SPLICE	YES	35	21	0.68	0.78	0.508	0.3135	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	OE19_OESOPHAGUS	0.68	0.78	0.8215	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	17	143	SREBF2	14026	chr22:42282312:+	DBF4B	39693	chr17:42818769:+	ONLY_REF_SPLICE	YES	195	17	0.45	0.9	0.1838	1.5457	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.45	0.9	1.7295	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	11	139	SREBF2	12729	chr22:42281015:+	DBF4B	39628	chr17:42818704:+	ONLY_REF_SPLICE	YES	181	13	0.45	0.92	0.1189	1.5025	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.45	0.92	1.6214	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	7	148	SREBF2	14026	chr22:42282312:+	DBF4B	39628	chr17:42818704:+	ONLY_REF_SPLICE	YES	195	13	0.44	0.92	0.0757	1.5998	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.44	0.92	1.6755	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	3	127	PHF12	2707	chr17:27277083:-	MYO18A	43109	chr17:27442459:-	ONLY_REF_SPLICE	YES	83	344	0.61	0.27	0.0324	1.3728	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.27	0.61	1.4052	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	WDTC1--DYM	25	28	WDTC1	2583	chr1:27587593:+	DYM	43558	chr18:46812983:-	ONLY_REF_SPLICE	YES	35	21	0.6	0.72	0.2702	0.3027	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	OE19_OESOPHAGUS	0.6	0.72	0.5729	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	5	98	SREBF2	12709	chr22:42280995:+	DBF4B	39693	chr17:42818769:+	INCL_NON_REF_SPLICE	YES	160	17	0.39	0.86	0.054	1.0593	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.39	0.86	1.1133	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	4	102	SREBF2	14026	chr22:42282312:+	DBF4B	40745	chr17:42824451:+	ONLY_REF_SPLICE	YES	195	19	0.35	0.85	0.0432	1.1025	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.35	0.85	1.1457	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	3	70	SREBF2	12709	chr22:42280995:+	DBF4B	40745	chr17:42824451:+	INCL_NON_REF_SPLICE	YES	160	19	0.31	0.79	0.0324	0.7566	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.31	0.79	0.789	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MED15--CCND2	15	6	MED15	3426	chr22:20862033:+	CCND2	29383	chr12:4383167:+	INCL_NON_REF_SPLICE	YES	60	0	0.26	1	0.1621	0.0649	MED15->chr22:20850200-20941919:+,mediator_complex_subunit_15,CCND2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:4382938-4414516:+,cyclin_D2	OE19_OESOPHAGUS	0.26	1	0.227	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	1	45	PHF12	3104	chr17:27276686:-	MYO18A	44453	chr17:27441115:-	ONLY_REF_SPLICE	YES	55	351	0.46	0.12	0.0108	0.4864	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.12	0.46	0.4972	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	HAP1--FKBP10	1	29	HAP1	5355	chr17:39884014:-	FKBP10	19066	chr17:39974341:+	ONLY_REF_SPLICE	YES	7	250	0.81	0.11	0.0108	0.3135	LOCAL_INVERSION:-:+:[78036],HAP1->chr17:39873994-39890896:-,huntingtin-associated_protein_1,FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+	OE19_OESOPHAGUS	0.11	0.81	0.3243	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	HAP1--FKBP10	1	25	HAP1	3785	chr17:39887745:-	FKBP10	18035	chr17:39973310:+	ONLY_REF_SPLICE	NO	105	48	0.2	0.35	0.0108	0.2702	LOCAL_INVERSION:-:+:[78036],HAP1->chr17:39873994-39890896:-,huntingtin-associated_protein_1,FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+	OE19_OESOPHAGUS	0.2	0.35	0.281	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	FGD4--CMAS	7	0	FGD4	1431	chr12:32552893:+	CMAS	39253	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0757	0	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	OE19_OESOPHAGUS	1	1	0.0757	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	DOCK7--CACHD1	5	6	DOCK7	29950	chr1:63003562:-	CACHD1	79049	chr1:65137247:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.054	0.0649	DOCK7->chr1:62920399-63153969:-,dedicator_of_cytokinesis_7,CACHD1->cache_domain_containing_1,chr1:64936428-65158741:+	OE19_OESOPHAGUS	0.85	1	0.1189	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	AGPS--PACRG	5	3	AGPS	10716	chr2:178333252:+	PACRG	43818	chr6:163735859:+	ONLY_REF_SPLICE	YES	62	0	0.11	1	0.054	0.0324	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	OE19_OESOPHAGUS	0.11	1	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	DDX23--RP11-554L12.1	2	15	DDX23	4063	chr12:49239357:-	RP11-554L12.1	20566	chr12:39481794:-	ONLY_REF_SPLICE	YES	103	73	0.14	0.19	0.0216	0.1621	DDX23->DEAD-box_helicase_23,chr12:49223547-49246625:-,RP11-554L12.1->chr12:39481515-39486676:-	OE19_OESOPHAGUS	0.14	0.19	0.1837	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	C17orf76-AS1--SEPT9	5	0	C17orf76-AS1	1593	chr17:16342728:+	SEPT9	45890	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	C17orf76-AS1->chr17:16342136-16381992:+,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	OE19_OESOPHAGUS	1	1	0.054	TRUE	0	3	0	6	0	TRUE	ACH-000679
OE19_OESOPHAGUS	CASC9--RP11-300E4.2	5	0	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	OE19_OESOPHAGUS	1	1	0.054	TRUE	0	23	0	19	23	TRUE	ACH-000679
OE19_OESOPHAGUS	AGPS--AC009478.1	4	3	AGPS	10716	chr2:178333252:+	AC009478.1	32498	chr2:181465634:-	ONLY_REF_SPLICE	YES	62	0	0.1	1	0.0432	0.0324	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,AC009478.1->chr2:181436439-181557181:-	OE19_OESOPHAGUS	0.1	1	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	FGD4--RP11-729I10.2	4	0	FGD4	1431	chr12:32552893:+	RP11-729I10.2	40164	chr12:22022516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP11-729I10.2->chr12:21980144-22040891:+	OE19_OESOPHAGUS	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	NAALADL2--KRT42P	4	0	NAALADL2	2201	chr3:174158822:+	KRT42P	46110	chr17:39791654:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+,KRT42P->chr17:39782579-39796451:-,keratin_42_pseudogene	OE19_OESOPHAGUS	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	FBXL17--KIAA0825	3	2	FBXL17	9230	chr5:107356626:-	KIAA0825	49377	chr5:93489829:-	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.0324	0.0216	FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-,KIAA0825->KIAA0825,chr5:93488671-93954309:-	OE19_OESOPHAGUS	0.31	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	WDTC1--DYM	2	1	WDTC1	1436	chr1:27561442:+	DYM	54993	chr18:46623868:-	ONLY_REF_SPLICE	YES	15	54	0.17	0.05	0.0216	0.0108	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	OE19_OESOPHAGUS	0.05	0.17	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	EPC1--PFKP	2	0	EPC1	4087	chr10:32635691:-	PFKP	30507	chr10:3124580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	EPC1->chr10:32556679-32667726:-,enhancer_of_polycomb_homolog_1,PFKP->chr10:3108525-3179904:+,phosphofructokinase,_platelet	OE19_OESOPHAGUS	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	GRHL2--YWHAZ	2	0	GRHL2	1358	chr8:102505017:+	YWHAZ	32633	chr8:101937267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	OE19_OESOPHAGUS	1	1	0.0216	TRUE	0	0	0	2	0	TRUE	ACH-000679
OE19_OESOPHAGUS	QSOX2--SET	2	0	QSOX2	1366	chr9:139137322:-	SET	22312	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	QSOX2->chr9:139098179-139137687:-,quiescin_sulfhydryl_oxidase_2,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OE19_OESOPHAGUS	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	WDTC1--DYM	1	4	WDTC1	1436	chr1:27561442:+	DYM	43558	chr18:46812983:-	ONLY_REF_SPLICE	YES	15	21	0.25	0.19	0.0108	0.0432	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	OE19_OESOPHAGUS	0.19	0.25	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	WDTC1--DYM	1	4	WDTC1	2583	chr1:27587593:+	DYM	45917	chr18:46798673:-	ONLY_REF_SPLICE	YES	35	43	0.12	0.1	0.0108	0.0432	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	OE19_OESOPHAGUS	0.1	0.12	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	WDTC1--DYM	1	4	WDTC1	1436	chr1:27561442:+	DYM	43555	chr18:46812986:-	ONLY_REF_SPLICE	YES	15	21	0.25	0.19	0.0108	0.0432	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	OE19_OESOPHAGUS	0.19	0.25	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	DHX58--RP11-115J16.2	1	1	DHX58	5633	chr17:40259622:-	RP11-115J16.2	20081	chr8:9232649:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0108	0.0108	DHX58->DEXH-box_helicase_58,chr17:40253422-40264751:-,RP11-115J16.2->chr8:9229480-9293715:-	OE19_OESOPHAGUS	0.33	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	FGD4--RP11-729I10.2	1	1	FGD4	1431	chr12:32552893:+	RP11-729I10.2	37833	chr12:21980144:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0108	0.0108	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP11-729I10.2->chr12:21980144-22040891:+	OE19_OESOPHAGUS	0.67	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000679
FTC238_THYROID	RP11-307P5.1--STXBP5	142	28	RP11-307P5.1	1117	chr6:147981955:+	STXBP5	41144	chr6:147703914:+	ONLY_REF_SPLICE	YES	24	20	0.88	0.89	1.4763	0.2911	RP11-307P5.1->chr6:147981839-148275073:+,STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5	FTC238_THYROID	0.88	0.89	1.7674	TRUE	0	0	0	1	0	TRUE	ACH-000897
FTC238_THYROID	RP11-307P5.1--STXBP5	9	29	RP11-307P5.1	2198	chr6:147997291:+	STXBP5	41144	chr6:147703914:+	ONLY_REF_SPLICE	YES	118	20	0.24	0.66	0.0936	0.3015	RP11-307P5.1->chr6:147981839-148275073:+,STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5	FTC238_THYROID	0.24	0.66	0.3951	TRUE	0	0	0	1	0	TRUE	ACH-000897
FTC238_THYROID	RP11-307P5.1--SASH1	4	3	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	24	2	0.23	0.78	0.0416	0.0312	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	FTC238_THYROID	0.23	0.78	0.0728	TRUE	0	0	0	16	0	TRUE	ACH-000897
FTC238_THYROID	RPLP1--TAGLN2	4	0	RPLP1	1170	chr15:69745292:+	TAGLN2	12429	chr1:159888329:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,TAGLN2->chr1:159887897-159895522:-,transgelin_2	FTC238_THYROID	1	1	0.0416	TRUE	0	0	0	4	0	TRUE	ACH-000897
FTC238_THYROID	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	FTC238_THYROID	1	1	0.0312	TRUE	0	5	0	18	5	TRUE	ACH-000897
FTC238_THYROID	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	FTC238_THYROID	1	1	0.0312	TRUE	0	8	0	10	8	TRUE	ACH-000897
FTC238_THYROID	NCOR1P2--KCNJ12	2	1	NCOR1P2	1104	chr17:21536117:+	KCNJ12	8204	chr17:21311831:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0208	0.0104	NCOR1P2->chr17:21536014-21544603:+,nuclear_receptor_corepressor_1_pseudogene_2,KCNJ12->chr17:21279509-21323179:+,potassium_voltage-gated_channel_subfamily_J_member_12	FTC238_THYROID	0.75	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000897
FTC238_THYROID	RP11-307P5.1--SASH1	1	5	RP11-307P5.1	6659	chr6:148268655:+	SASH1	15276	chr6:148761494:+	ONLY_REF_SPLICE	YES	1	17	0.86	0.26	0.0104	0.052	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	FTC238_THYROID	0.26	0.86	0.0624	TRUE	0	0	0	2	0	TRUE	ACH-000897
FTC238_THYROID	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	FTC238_THYROID	1	1	0.0208	TRUE	0	0	0	12	0	TRUE	ACH-000897
FTC238_THYROID	MB21D2--GOLIM4	2	0	MB21D2	1532	chr3:192635419:-	GOLIM4	10246	chr3:167766153:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,GOLIM4->chr3:167726465-167813763:-,golgi_integral_membrane_protein_4	FTC238_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000897
FTC238_THYROID	SMAD2--CHRNA5	2	0	SMAD2	13078	chr18:45391430:-	CHRNA5	38080	chr15:78885434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-,CHRNA5->cholinergic_receptor_nicotinic_alpha_5_subunit,chr15:78857862-78887611:+	FTC238_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000897
FTC238_THYROID	SOGA3--LUC7L2	2	0	SOGA3	1777	chr6:127839724:-	LUC7L2	37759	chr7:139106909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	SOGA3->SOGA_family_member_3,chr6:127759551-127840146:-,chr6:127759551-127840500:-,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	FTC238_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000897
TTC1240_SOFT_TISSUE	TANC2--CYB561	46	58	TANC2	22474	chr17:61432751:+	CYB561	56503	chr17:61514921:-	ONLY_REF_SPLICE	YES	164	3	0.39	0.97	0.7223	0.9107	LOCAL_INVERSION:+:-:[4605],TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CYB561->chr17:61509665-61523739:-,cytochrome_b561	TTC1240_SOFT_TISSUE	0.39	0.97	1.633	TRUE	0	0	0	1	0	TRUE	ACH-001210
CAL78_BONE	IPO7--SLC22A18AS	45	32	IPO7	1226	chr11:9406394:+	SLC22A18AS	35727	chr11:2909865:-	ONLY_REF_SPLICE	YES	22	0	0.78	1	0.9133	0.6494	IPO7->chr11:9406169-9469673:+,importin_7,SLC22A18AS->chr11:2909010-2924970:-,solute_carrier_family_22_member_18_antisense	CAL78_BONE	0.78	1	1.5627	TRUE	0	0	0	2	0	TRUE	ACH-000516
CAL78_BONE	SIRT2--RYR1	22	23	SIRT2	8232	chr19:39379725:-	RYR1	95600	chr19:39068769:+	INCL_NON_REF_SPLICE	YES	39	0	0.54	1	0.4465	0.4668	SIRT2->chr19:39369197-39390502:-,sirtuin_2,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	CAL78_BONE	0.54	1	0.9133	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	EPRS--PCNXL2	15	5	EPRS	6868	chr1:220203728:-	PCNXL2	64352	chr1:233231609:-	ONLY_REF_SPLICE	YES	22	6	0.48	0.77	0.3044	0.1015	EPRS->chr1:220141943-220220000:-,glutamyl-prolyl-tRNA_synthetase,PCNXL2->chr1:233119181-233431459:-	CAL78_BONE	0.48	0.77	0.4059	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	PDSS1--CTC-459I6.1	9	4	PDSS1	5064	chr10:26998697:+	CTC-459I6.1	18701	chr5:80247299:-	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.1827	0.0812	PDSS1->chr10:26986588-27035727:+,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_1,CTC-459I6.1->chr5:80243516-80256726:-	CAL78_BONE	0.76	1	0.2639	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	SIRT2--RYR1	2	18	SIRT2	8230	chr19:39379727:-	RYR1	96676	chr19:39070622:+	ONLY_REF_SPLICE	YES	39	0	0.34	1	0.0406	0.3653	SIRT2->chr19:39369197-39390502:-,sirtuin_2,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	CAL78_BONE	0.34	1	0.4059	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	AC010127.3--WDR33	6	0	AC010127.3	19007	chr2:167108422:+	WDR33	31110	chr2:128526575:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1218	0	AC010127.3->chr2:166813909-167158294:+,WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-	CAL78_BONE	1	1	0.1218	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	GLYR1--PPL	4	2	GLYR1	15773	chr16:4861171:-	PPL	36111	chr16:4940922:-	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0812	0.0406	LOCAL_REARRANGEMENT:-:[35165],GLYR1->chr16:4853204-4897343:-,glyoxylate_reductase_1_homolog,PPL->chr16:4932508-5010742:-,periplakin	CAL78_BONE	0.3	1	0.1218	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	POLR2E--KDM1A	4	0	POLR2E	7574	chr19:1088642:-	KDM1A	27516	chr1:23399862:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0812	0	POLR2E->chr19:1086594-1095598:-,polymerase_(RNA)_II_subunit_E,KDM1A->chr1:23345941-23410182:+,lysine_demethylase_1A	CAL78_BONE	1	1	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	C2CD3--FAM168A	3	3	C2CD3	48092	chr11:73739332:-	FAM168A	55371	chr11:73179537:-	ONLY_REF_SPLICE	YES	18	18	0.25	0.25	0.0609	0.0609	C2CD3->C2_calcium-dependent_domain_containing_3,chr11:73723763-73882255:-,FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A	CAL78_BONE	0.25	0.25	0.1218	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	COL1A1--DNMBP	3	0	COL1A1	6099	chr17:48273676:-	DNMBP	25990	chr10:101716458:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein	CAL78_BONE	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	KIF1C--OSTC	3	0	KIF1C	7655	chr17:4907897:+	OSTC	25626	chr4:109571794:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	KIF1C->chr17:4901243-4931696:+,kinesin_family_member_1C,OSTC->chr4:109571740-109588976:+,oligosaccharyltransferase_complex_subunit_(non-catalytic)	CAL78_BONE	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	LARP1--UTP20	3	0	LARP1	24235	chr5:154196751:+	UTP20	73231	chr12:101763507:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,UTP20->UTP20,_small_subunit_processome_component,chr12:101673887-101780394:+	CAL78_BONE	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	PSMD14--MYO5C	3	0	PSMD14	3934	chr2:162175384:+	MYO5C	30176	chr15:52562057:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0609	0	PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14,MYO5C->chr15:52484519-52587995:-,myosin_VC	CAL78_BONE	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	SRCAP--EEF1G	3	0	SRCAP	14734	chr16:30732151:+	EEF1G	36673	chr11:62340120:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+,EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma	CAL78_BONE	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	USP1--SH3D21	3	0	USP1	1806	chr1:62902773:+	SH3D21	16494	chr1:36772728:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	USP1->chr1:62901968-62917475:+,ubiquitin_specific_peptidase_1,SH3D21->SH3_domain_containing_21,chr1:36771988-36790484:+	CAL78_BONE	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	CHID1--KCNQ1	2	1	CHID1	14506	chr11:883200:-	KCNQ1	32848	chr11:2604665:+	ONLY_REF_SPLICE	YES	34	0	0.08	1	0.0406	0.0203	CHID1->chitinase_domain_containing_1,chr11:867357-915058:-,KCNQ1->chr11:2465914-2870339:+,potassium_voltage-gated_channel_subfamily_Q_member_1	CAL78_BONE	0.08	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	ANPEP--TPM1	2	0	ANPEP	1630	chr15:90358004:-	TPM1	25782	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	COPS5--ATP5F1	2	0	COPS5	15513	chr8:67958047:-	ATP5F1	24403	chr1:111998708:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	COPS5->COP9_signalosome_subunit_5,chr8:67955314-67996018:-,ATP5F1->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_B1,chr1:111991486-112005395:+	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	CTA-392C11.1--MSH3	2	0	CTA-392C11.1	1125	chr8:40200797:-	MSH3	35727	chr5:80168935:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	CTA-392C11.1->chr8:40156260-40200921:-,MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	CUL3--OSER1	2	0	CUL3	1450	chr2:225449661:-	OSER1	38154	chr20:42835638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	ERH--ATP5O	2	0	ERH	1397	chr14:69864948:-	ATP5O	15484	chr21:35276325:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	ERH->chr14:69846848-69865344:-,enhancer_of_rudimentary_homolog_(Drosophila),ATP5O->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_O_subunit,chr21:35275757-35288284:-	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	FAF1--UEVLD	2	0	FAF1	9453	chr1:51121114:-	UEVLD	35506	chr11:18591924:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,UEVLD->UEV_and_lactate/malate_dehyrogenase_domains,chr11:18551156-18610294:-	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	FAM126A--TSC1	2	0	FAM126A	2285	chr7:23030680:-	TSC1	30826	chr9:135787844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	FAM126A->chr7:22980878-23053749:-,family_with_sequence_similarity_126_member_A,TSC1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:135766735-135820020:-,tuberous_sclerosis_1	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	GPD2--PSMD14	2	0	GPD2	2224	chr2:157293025:+	PSMD14	45786	chr2:162265348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	GPD2->chr2:157291802-157470247:+,glycerol-3-phosphate_dehydrogenase_2,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	LAMB1--IMMP2L	2	0	LAMB1	21656	chr7:107591671:-	IMMP2L	51531	chr7:110303777:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	MAPK8--HNRNPF	2	0	MAPK8	1167	chr10:49514864:+	HNRNPF	29204	chr10:43883384:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	MAPK8->Oncogene{Bushman},chr10:49514698-49647403:+,mitogen-activated_protein_kinase_8,HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	MED15--PRKAR1A	2	0	MED15	3426	chr22:20862033:+	PRKAR1A	32219	chr17:66511535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	MED15->chr22:20850200-20941919:+,mediator_complex_subunit_15,PRKAR1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:66507921-66547460:+,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_alpha	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	MKLN1-AS1--CARKD	2	0	MKLN1-AS1	13605	chr7:130630479:-	CARKD	20504	chr13:111274563:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	MKLN1-AS1->chr7:130626519-130794935:-,CARKD->chr13:111267881-111292340:+	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	MTMR10--GALNT1	2	0	MTMR10	1831	chr15:31282980:-	GALNT1	28901	chr18:33234524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	MTMR10->chr15:31231144-31283810:-,myotubularin_related_protein_10,GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	NR2C1--METAP2	2	0	NR2C1	10531	chr12:95442844:-	METAP2	31036	chr12:95887832:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	NR2C1->chr12:95414005-95467479:-,nuclear_receptor_subfamily_2_group_C_member_1,METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	NRIP1--CLK3	2	0	NRIP1	3459	chr21:16386665:-	CLK3	29823	chr15:74914835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,CLK3->CDC_like_kinase_3,chr15:74890841-74932057:+	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	PCMTD1--POLR2B	2	0	PCMTD1	1246	chr8:52811490:-	POLR2B	23685	chr4:57852520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,POLR2B->chr4:57843888-57897334:+,polymerase_(RNA)_II_subunit_B	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	PPARA--TBX15	2	0	PPARA	9304	chr22:46594488:+	TBX15	29971	chr1:119474455:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	PPARA->chr22:46546424-46639653:+,peroxisome_proliferator_activated_receptor_alpha,TBX15->T-box_15,chr1:119425669-119532179:-	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	PRDM6--CXXC5	2	0	PRDM6	2486	chr5:122426301:+	CXXC5	28815	chr5:139059949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	PRDM6->PR_domain_6,chr5:122424816-122529960:+,CXXC5->CXXC_finger_protein_5,chr5:139026884-139063467:+	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	RAP1GDS1--PDZRN3-AS1	2	0	RAP1GDS1	5677	chr4:99273752:+	PDZRN3-AS1	28380	chr3:73674563:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,PDZRN3-AS1->PDZRN3_antisense_RNA_1,chr3:73670864-73675149:+	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	RCC1--IFRD1	2	0	RCC1	2175	chr1:28834672:+	IFRD1	30859	chr7:112101921:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,IFRD1->chr7:112063023-112121072:+,interferon_related_developmental_regulator_1	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	SAFB--PLIN3	2	0	SAFB	2445	chr19:5626500:+	PLIN3	30410	chr19:4839548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	SAFB->chr19:5623046-5668489:+,scaffold_attachment_factor_B,PLIN3->chr19:4838353-4867780:-,perilipin_3	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	STXBP5--NOLC1	2	0	STXBP5	4539	chr6:147560406:+	NOLC1	39644	chr10:103918950:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,NOLC1->chr10:103911933-103923627:+,nucleolar_and_coiled-body_phosphoprotein_1	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	TRAF3--NRXN3	2	0	TRAF3	1200	chr14:103244012:+	NRXN3	59940	chr14:80130121:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+,NRXN3->chr14:78708734-80330762:+,neurexin_3	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	TSEN15--USP47	2	0	TSEN15	2296	chr1:184023569:+	USP47	35325	chr11:11969492:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	TSEN15->chr1:184020811-184043346:+,tRNA_splicing_endonuclease_subunit_15,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	TUBB--SH3BP4	2	0	TUBB	1363	chr6:30688340:+	SH3BP4	16586	chr2:235903947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I,SH3BP4->SH3_domain_binding_protein_4,chr2:235860617-235964358:+	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	B3GAT2--DLEU1	1	3	B3GAT2	2200	chr6:71665542:-	DLEU1	32652	chr13:50964334:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0203	0.0609	B3GAT2->beta-1,3-glucuronyltransferase_2,chr6:71566382-71666741:-,DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding)	CAL78_BONE	1	1	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	GLYR1--PPL	1	2	GLYR1	15773	chr16:4861171:-	PPL	36698	chr16:4940335:-	ONLY_REF_SPLICE	YES	14	1	0.18	0.75	0.0203	0.0406	LOCAL_REARRANGEMENT:-:[35165],GLYR1->chr16:4853204-4897343:-,glyoxylate_reductase_1_homolog,PPL->chr16:4932508-5010742:-,periplakin	CAL78_BONE	0.18	0.75	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
NCIH1666_LUNG	MAP3K4--C6orf118	41	14	MAP3K4	1357	chr6:161413115:+	C6orf118	45098	chr6:165703556:-	ONLY_REF_SPLICE	YES	12	0	0.82	1	0.512	0.1748	MAP3K4->chr6:161412759-161538417:+,mitogen-activated_protein_kinase_kinase_kinase_4,C6orf118->chr6:165693153-165723096:-,chromosome_6_open_reading_frame_118	NCIH1666_LUNG	0.82	1	0.6868	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	SLC25A3--ANKS1B	35	27	SLC25A3	1545	chr12:98987913:+	ANKS1B	32729	chr12:99640642:-	ONLY_REF_SPLICE	YES	1054	0	0.06	1	0.437	0.3371	SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	NCIH1666_LUNG	0.06	1	0.7741	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MED29--FREM2	20	7	MED29	3335	chr19:39884277:+	FREM2	41431	chr13:39454421:+	ONLY_REF_SPLICE	YES	77	0	0.26	1	0.2497	0.0874	MED29->chr19:39881943-39891277:+,mediator_complex_subunit_29,FREM2->FRAS1_related_extracellular_matrix_protein_2,chr13:39261266-39460074:+	NCIH1666_LUNG	0.26	1	0.3371	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	TMC6--TK1	17	6	TMC6	3942	chr17:76124693:-	TK1	26873	chr17:76171699:-	ONLY_REF_SPLICE	YES	10	281	0.7	0.08	0.2123	0.0749	LOCAL_REARRANGEMENT:-:[41672],TMC6->chr17:76106539-76128488:-,transmembrane_channel_like_6,TK1->Oncogene{Bushman},chr17:76170160-76183314:-,thymidine_kinase_1	NCIH1666_LUNG	0.08	0.7	0.2872	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	IGF2R--EPM2A	16	3	IGF2R	1297	chr6:160390427:+	EPM2A	56523	chr6:146007432:-	ONLY_REF_SPLICE	YES	5	0	0.79	1	0.1998	0.0375	IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,EPM2A->chr6:145822719-146057160:-,epilepsy,_progressive_myoclonus_type_2A,_Lafora_disease_(laforin)	NCIH1666_LUNG	0.79	1	0.2373	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	IGF2R--RP3-466P17.2	15	1	IGF2R	1297	chr6:160390427:+	RP3-466P17.2	54072	chr6:146058307:-	INCL_NON_REF_SPLICE	YES	5	0	0.76	1	0.1873	0.0125	IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,RP3-466P17.2->chr6:146058047-146058309:-	NCIH1666_LUNG	0.76	1	0.1998	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	PRDM15--CRYZL1	13	7	PRDM15	22683	chr21:43242259:-	CRYZL1	47978	chr21:35003863:-	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.1623	0.0874	PRDM15->PR_domain_15,chr21:43218385-43299591:-,CRYZL1->chr21:34961647-35016232:-,crystallin_zeta_like_1	NCIH1666_LUNG	0.83	1	0.2497	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MAP7--IGF2R	10	0	MAP7	1478	chr6:136871480:-	IGF2R	26465	chr6:160412216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1249	0	MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7,IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor	NCIH1666_LUNG	1	1	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	ARID1B--AL590867.1	8	0	ARID1B	9571	chr6:157406039:+	AL590867.1	42490	chr6:153667581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0999	0	ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,AL590867.1->chr6:153552455-153668623:+	NCIH1666_LUNG	1	1	0.0999	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MAP3K4--C6orf118	7	3	MAP3K4	1357	chr6:161413115:+	C6orf118	46609	chr6:165695182:-	ONLY_REF_SPLICE	YES	12	20	0.45	0.33	0.0874	0.0375	MAP3K4->chr6:161412759-161538417:+,mitogen-activated_protein_kinase_kinase_kinase_4,C6orf118->chr6:165693153-165723096:-,chromosome_6_open_reading_frame_118	NCIH1666_LUNG	0.33	0.45	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	RBL1--TMPRSS15	4	4	RBL1	14322	chr20:35668556:-	TMPRSS15	32585	chr21:19770646:-	ONLY_REF_SPLICE	YES	20	1	0.29	0.89	0.0499	0.0499	RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1,TMPRSS15->chr21:19641433-19858197:-,transmembrane_protease,_serine_15	NCIH1666_LUNG	0.29	0.89	0.0998	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	BMP2K--CNGA1	4	2	BMP2K	18691	chr4:79808438:+	CNGA1	30701	chr4:48012910:-	ONLY_REF_SPLICE	YES	3	6	0.67	0.5	0.0499	0.025	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,CNGA1->chr4:47937994-48018689:-,cyclic_nucleotide_gated_channel_alpha_1	NCIH1666_LUNG	0.5	0.67	0.0749	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	ANK3--RP11-417J8.1	3	4	ANK3	45695	chr10:61840295:-	RP11-417J8.1	75703	chr1:142557333:+	ONLY_REF_SPLICE	YES	22	0	0.24	1	0.0375	0.0499	ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-,RP11-417J8.1->chr1:142553293-142559170:+	NCIH1666_LUNG	0.24	1	0.0874	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	ACTN4--AC016582.2	2	0	ACTN4	1259	chr19:39138547:+	AC016582.2	28792	chr19:38327655:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,AC016582.2->chr19:38314362-38345855:-	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	AP4B1--PPFIA1	2	0	AP4B1	1597	chr1:114447227:-	PPFIA1	15186	chr11:70118279:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	AP4B1->adaptor_related_protein_complex_4_beta_1_subunit,chr1:114437370-114447823:-,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	C2orf69--UBC	2	0	C2orf69	1516	chr2:200776494:+	UBC	13024	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	C2orf69->chr2:200775979-200820658:+,chromosome_2_open_reading_frame_69,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	EPCAM--MSH6	2	0	EPCAM	2720	chr2:47596720:+	MSH6	25286	chr2:48023033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule,MSH6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47922669-48037240:+,mutS_homolog_6	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	GEMIN6--DHX57	2	0	GEMIN6	4383	chr2:39006260:+	DHX57	38088	chr2:39033835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_INVERSION:+:-:[12729],GEMIN6->chr2:38978676-39012142:+,gem_nuclear_organelle_associated_protein_6,DHX57->DEAH-box_helicase_57,chr2:39024871-39103075:-	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MRPL15--CNST	2	0	MRPL15	3108	chr8:55049993:+	CNST	20001	chr1:246829002:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	MRPL15->chr8:55047770-55060461:+,mitochondrial_ribosomal_protein_L15,CNST->chr1:246729746-246831886:+,consortin,_connexin_sorting_protein	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	SLX4IP--SNAP25	2	0	SLX4IP	2207	chr20:10438879:+	SNAP25	15326	chr20:10256077:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SLX4IP->SLX4_interacting_protein,chr20:10415951-10617477:+,SNAP25->chr20:10199478-10288066:+,synaptosome_associated_protein_25kDa	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MED29--FREM2	1	2	MED29	1336	chr19:39882278:+	FREM2	41431	chr13:39454421:+	ONLY_REF_SPLICE	NO	60	0	0.05	1	0.0125	0.025	MED29->chr19:39881943-39891277:+,mediator_complex_subunit_29,FREM2->FRAS1_related_extracellular_matrix_protein_2,chr13:39261266-39460074:+	NCIH1666_LUNG	0.05	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	RLF--MYCL	1	1	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	29	9	0.06	0.18	0.0125	0.0125	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1666_LUNG	0.06	0.18	0.025	TRUE	0	0	0	10	0	TRUE	ACH-000448
A172_CENTRAL_NERVOUS_SYSTEM	CNOT1--AC008731.1	344	64	CNOT1	1159	chr16:58663632:-	AC008731.1	52332	chr16:24931581:-	INCL_NON_REF_SPLICE	YES	18	3	0.96	0.99	4.2774	0.7958	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,AC008731.1->chr16:24930714-24932325:-	A172_CENTRAL_NERVOUS_SYSTEM	0.96	0.99	5.0732	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	SNTB2--IL34	119	59	SNTB2	5129	chr16:69294163:+	IL34	25032	chr16:70690505:+	ONLY_REF_SPLICE	YES	21	2	0.89	0.99	1.4797	0.7336	{Klijn_CCL:Brain=1},SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2,IL34->chr16:70613798-70694585:+,interleukin_34	A172_CENTRAL_NERVOUS_SYSTEM	0.89	0.99	2.2133	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	SETX--TNRC6A	69	24	SETX	14146	chr9:135201711:-	TNRC6A	53789	chr16:24808811:+	ONLY_REF_SPLICE	YES	26	41	0.78	0.69	0.858	0.2984	{Klijn_CCL:Brain=1},SETX->chr9:135136743-135230372:-,senataxin,TNRC6A->chr16:24741016-24838953:+,trinucleotide_repeat_containing_6A	A172_CENTRAL_NERVOUS_SYSTEM	0.69	0.78	1.1564	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PAFAH1B1--COX10-AS1	51	31	PAFAH1B1	14978	chr17:2579900:+	COX10-AS1	35992	chr17:13694350:-	INCL_NON_REF_SPLICE	YES	151	3	0.35	0.96	0.6342	0.3855	PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1,COX10-AS1->COX10_antisense_RNA_1,chr17:13659795-13972812:-	A172_CENTRAL_NERVOUS_SYSTEM	0.35	0.96	1.0197	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTB-31N19.2--RANBP10	50	24	CTB-31N19.2	2725	chr16:21558722:-	RANBP10	15693	chr16:67771938:-	ONLY_REF_SPLICE	YES	0	21	1	0.78	0.6217	0.2984	CTB-31N19.2->chr16:21544266-21561694:-,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	A172_CENTRAL_NERVOUS_SYSTEM	0.78	1	0.9201	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	ABL1--GINS3	49	26	ABL1	1510	chr9:133589842:+	GINS3	24698	chr16:58420525:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6093	0.3233	ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.9326	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	C16orf52--PALB2	53	8	C16orf52	1770	chr16:22019728:+	PALB2	29524	chr16:23619333:-	ONLY_REF_SPLICE	YES	3	26	0.95	0.7	0.659	0.0995	C16orf52->chr16:22018959-22098855:+,chromosome_16_open_reading_frame_52,PALB2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:23614488-23652631:-,partner_and_localizer_of_BRCA2	A172_CENTRAL_NERVOUS_SYSTEM	0.7	0.95	0.7585	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	NFAT5--IQCE	44	29	NFAT5	2281	chr16:69600277:+	IQCE	55997	chr7:2641075:+	ONLY_REF_SPLICE	YES	10	57	0.88	0.56	0.5471	0.3606	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	A172_CENTRAL_NERVOUS_SYSTEM	0.56	0.88	0.9077	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTD-2547E10.2--CTB-31N19.2	31	21	CTD-2547E10.2	1617	chr16:21531149:-	CTB-31N19.2	32575	chr16:21561694:-	ONLY_REF_SPLICE	YES	5	0	0.91	1	0.3855	0.2611	LOCAL_REARRANGEMENT:-:[12501],CTD-2547E10.2->chr16:21458004-21531765:-,CTB-31N19.2->chr16:21544266-21561694:-	A172_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.6466	TRUE	0	0	0	2	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CBFB--FUK	28	16	CBFB	3391	chr16:67070658:+	FUK	17088	chr16:70497072:+	ONLY_REF_SPLICE	YES	159	2	0.22	0.96	0.3482	0.199	{Klijn_CCL:Brain=1},CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,FUK->chr16:70488324-70514177:+,fucokinase	A172_CENTRAL_NERVOUS_SYSTEM	0.22	0.96	0.5472	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	ABL1--CBFB	26	14	ABL1	12120	chr9:133756051:+	CBFB	23219	chr16:67100585:+	ONLY_REF_SPLICE	YES	15	181	0.73	0.18	0.3233	0.1741	ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	A172_CENTRAL_NERVOUS_SYSTEM	0.18	0.73	0.4974	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	DBF4B--NMT1	26	14	DBF4B	1759	chr17:42786734:+	NMT1	21628	chr17:43138651:+	ONLY_REF_SPLICE	YES	48	0	0.45	1	0.3233	0.1741	DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+,NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+	A172_CENTRAL_NERVOUS_SYSTEM	0.45	1	0.4974	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	NFAT5--IQCE	20	35	NFAT5	3335	chr16:69602451:+	IQCE	55997	chr7:2641075:+	ONLY_REF_SPLICE	YES	12	57	0.82	0.49	0.2487	0.4352	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	A172_CENTRAL_NERVOUS_SYSTEM	0.49	0.82	0.6839	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CNOT1--AC008731.1	9	73	CNOT1	2301	chr16:58658557:-	AC008731.1	52332	chr16:24931581:-	INCL_NON_REF_SPLICE	YES	53	3	0.61	0.96	0.1119	0.9077	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,AC008731.1->chr16:24930714-24932325:-	A172_CENTRAL_NERVOUS_SYSTEM	0.61	0.96	1.0196	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	USB1--SLC6A2	22	17	USB1	3411	chr16:58036549:+	SLC6A2	19544	chr16:55690556:+	ONLY_REF_SPLICE	YES	100	0	0.28	1	0.2736	0.2114	USB1->U6_snRNA_biogenesis_phosphodiesterase_1,chr16:58033450-58055522:+,SLC6A2->chr16:55689516-55740104:+,solute_carrier_family_6_member_2	A172_CENTRAL_NERVOUS_SYSTEM	0.28	1	0.485	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	C7orf50--CCL17	17	32	C7orf50	3078	chr7:1166893:-	CCL17	18029	chr16:57447783:+	INCL_NON_REF_SPLICE	YES	190	0	0.21	1	0.2114	0.3979	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,CCL17->C-C_motif_chemokine_ligand_17,chr16:57438679-57449974:+	A172_CENTRAL_NERVOUS_SYSTEM	0.21	1	0.6093	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	DCAF12--ELMSAN1	22	9	DCAF12	3377	chr9:34125021:-	ELMSAN1	21736	chr14:74206958:-	ONLY_REF_SPLICE	YES	60	5	0.34	0.86	0.2736	0.1119	DCAF12->DDB1_and_CUL4_associated_factor_12,chr9:34086385-34127397:-,ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-	A172_CENTRAL_NERVOUS_SYSTEM	0.34	0.86	0.3855	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	FAM20C--RAPGEF1	19	17	FAM20C	5852	chr7:208976:+	RAPGEF1	25081	chr9:134505711:-	ONLY_REF_SPLICE	YES	98	0	0.27	1	0.2363	0.2114	{Klijn_CCL:Brain=1},FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-	A172_CENTRAL_NERVOUS_SYSTEM	0.27	1	0.4477	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	TAOK1--CCDC144A	20	9	TAOK1	22436	chr17:27844674:+	CCDC144A	66092	chr17:16675291:+	ONLY_REF_SPLICE	YES	80	0	0.27	1	0.2487	0.1119	{Klijn_CCL:Brain=1},TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,CCDC144A->chr17:16592851-16707767:+,coiled-coil_domain_containing_144A	A172_CENTRAL_NERVOUS_SYSTEM	0.27	1	0.3606	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PAFAH1B1--COX10-AS1	12	35	PAFAH1B1	14978	chr17:2579900:+	COX10-AS1	35950	chr17:13694392:-	INCL_NON_REF_SPLICE	YES	151	3	0.24	0.94	0.1492	0.4352	PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1,COX10-AS1->COX10_antisense_RNA_1,chr17:13659795-13972812:-	A172_CENTRAL_NERVOUS_SYSTEM	0.24	0.94	0.5844	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	VARS--EHMT2	18	9	VARS	4634	chr6:31759387:-	EHMT2	30298	chr6:31848869:-	ONLY_REF_SPLICE	YES	141	67	0.16	0.29	0.2238	0.1119	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[83806],VARS->chr6:31745295-31763730:-,valyl-tRNA_synthetase,EHMT2->chr6:31847536-31865464:-,euchromatic_histone-lysine_N-methyltransferase_2	A172_CENTRAL_NERVOUS_SYSTEM	0.16	0.29	0.3357	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	ADAMTS2--RNF130	17	10	ADAMTS2	7234	chr5:178585724:-	RNF130	34605	chr5:179440311:-	ONLY_REF_SPLICE	YES	1	231	0.96	0.1	0.2114	0.1243	{Klijn_CCL:Brain=1},ADAMTS2->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_2,chr5:178537852-178772431:-,RNF130->chr5:179338651-179499118:-,ring_finger_protein_130	A172_CENTRAL_NERVOUS_SYSTEM	0.1	0.96	0.3357	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	GPR56--ZDHHC1	16	11	GPR56	22984	chr16:57689904:+	ZDHHC1	35213	chr16:67441716:-	ONLY_REF_SPLICE	YES	138	27	0.16	0.5	0.199	0.1368	GPR56->chr16:57644564-57698944:+,ZDHHC1->chr16:67428322-67450736:-,zinc_finger_DHHC-type_containing_1	A172_CENTRAL_NERVOUS_SYSTEM	0.16	0.5	0.3358	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MAD1L1--CPNE2	15	6	MAD1L1	33817	chr7:1976323:-	CPNE2	57376	chr16:57159772:+	ONLY_REF_SPLICE	YES	78	107	0.21	0.16	0.1865	0.0746	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,CPNE2->chr16:57126449-57181878:+,copine_2	A172_CENTRAL_NERVOUS_SYSTEM	0.16	0.21	0.2611	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	FAM20C--RAPGEF1	14	8	FAM20C	5852	chr7:208976:+	RAPGEF1	26151	chr9:134504641:-	ONLY_REF_SPLICE	YES	98	0	0.18	1	0.1741	0.0995	{Klijn_CCL:Brain=1},FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-	A172_CENTRAL_NERVOUS_SYSTEM	0.18	1	0.2736	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CPNE2--MAFK	15	1	CPNE2	1254	chr16:57126702:+	MAFK	28992	chr7:1578785:+	ONLY_REF_SPLICE	YES	1	116	0.94	0.12	0.1865	0.0124	CPNE2->chr16:57126449-57181878:+,copine_2,MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K	A172_CENTRAL_NERVOUS_SYSTEM	0.12	0.94	0.1989	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	C7orf50--CCL17	6	32	C7orf50	3078	chr7:1166893:-	CCL17	18032	chr16:57447786:+	ONLY_REF_SPLICE	YES	190	0	0.17	1	0.0746	0.3979	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,CCL17->C-C_motif_chemokine_ligand_17,chr16:57438679-57449974:+	A172_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.4725	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	SDK1--EEF2K	12	5	SDK1	23022	chr7:4091462:+	EEF2K	68018	chr16:22268069:+	ONLY_REF_SPLICE	YES	7	10	0.71	0.63	0.1492	0.0622	SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1,EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase	A172_CENTRAL_NERVOUS_SYSTEM	0.63	0.71	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PMFBP1--RADIL	9	8	PMFBP1	7273	chr16:72188110:-	RADIL	36612	chr7:4862185:-	ONLY_REF_SPLICE	YES	1	7	0.94	0.71	0.1119	0.0995	PMFBP1->chr16:72146056-72210777:-,polyamine_modulated_factor_1_binding_protein_1,RADIL->Rap_associating_with_DIL_domain,chr7:4836686-4923350:-	A172_CENTRAL_NERVOUS_SYSTEM	0.71	0.94	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MED27--AC012317.1	9	4	MED27	2412	chr9:134952829:-	AC012317.1	15981	chr16:24675325:-	ONLY_REF_SPLICE	YES	46	0	0.22	1	0.1119	0.0497	MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27,AC012317.1->chr16:24672743-24682383:-	A172_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.1616	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MAD1L1--CPNE2	9	2	MAD1L1	33817	chr7:1976323:-	CPNE2	60664	chr16:57168687:+	ONLY_REF_SPLICE	YES	78	89	0.12	0.11	0.1119	0.0249	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,CPNE2->chr16:57126449-57181878:+,copine_2	A172_CENTRAL_NERVOUS_SYSTEM	0.11	0.12	0.1368	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	C7orf50--MICALL2	9	1	C7orf50	3078	chr7:1166893:-	MICALL2	21511	chr7:1486464:-	ONLY_REF_SPLICE	YES	190	35	0.05	0.22	0.1119	0.0124	{Klijn_CCL:Brain=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MICALL2->MICAL_like_2,chr7:1468101-1499138:-	A172_CENTRAL_NERVOUS_SYSTEM	0.05	0.22	0.1243	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	METTL9--SDK1	7	6	METTL9	3213	chr16:21611219:+	SDK1	37781	chr7:4088980:+	ONLY_REF_SPLICE	YES	84	6	0.13	0.68	0.087	0.0746	METTL9->chr16:21608539-21668794:+,methyltransferase_like_9,SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1	A172_CENTRAL_NERVOUS_SYSTEM	0.13	0.68	0.1616	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PMFBP1--RADIL	6	10	PMFBP1	8495	chr16:72184507:-	RADIL	36612	chr7:4862185:-	ONLY_REF_SPLICE	YES	0	7	1	0.7	0.0746	0.1243	PMFBP1->chr16:72146056-72210777:-,polyamine_modulated_factor_1_binding_protein_1,RADIL->Rap_associating_with_DIL_domain,chr7:4836686-4923350:-	A172_CENTRAL_NERVOUS_SYSTEM	0.7	1	0.1989	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	C16orf52--PALB2	7	4	C16orf52	1770	chr16:22019728:+	PALB2	30673	chr16:23614990:-	ONLY_REF_SPLICE	YES	3	21	0.79	0.34	0.087	0.0497	C16orf52->chr16:22018959-22098855:+,chromosome_16_open_reading_frame_52,PALB2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:23614488-23652631:-,partner_and_localizer_of_BRCA2	A172_CENTRAL_NERVOUS_SYSTEM	0.34	0.79	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	GUSBP9--COL4A4	8	0	GUSBP9	9242	chr5:70498080:-	COL4A4	52178	chr2:227898197:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0995	0	GUSBP9->chr5:70435716-70585611:-,glucuronidase,_beta_pseudogene_9,COL4A4->chr2:227867427-228028829:-,collagen_type_IV_alpha_4	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0995	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MED27--C16orf52	7	2	MED27	2412	chr9:134952829:-	C16orf52	16888	chr16:22086808:+	ONLY_REF_SPLICE	YES	46	10	0.16	0.47	0.087	0.0249	MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27,C16orf52->chr16:22018959-22098855:+,chromosome_16_open_reading_frame_52	A172_CENTRAL_NERVOUS_SYSTEM	0.16	0.47	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTD-2547E10.2--CTB-31N19.2	6	5	CTD-2547E10.2	1617	chr16:21531149:-	CTB-31N19.2	33694	chr16:21559327:-	ONLY_REF_SPLICE	YES	5	5	0.69	0.69	0.0746	0.0622	LOCAL_REARRANGEMENT:-:[12501],CTD-2547E10.2->chr16:21458004-21531765:-,CTB-31N19.2->chr16:21544266-21561694:-	A172_CENTRAL_NERVOUS_SYSTEM	0.69	0.69	0.1368	TRUE	0	0	0	2	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	DBF4B--NMT1	6	5	DBF4B	1759	chr17:42786734:+	NMT1	23256	chr17:43159012:+	ONLY_REF_SPLICE	YES	48	290	0.19	0.04	0.0746	0.0622	DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+,NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+	A172_CENTRAL_NERVOUS_SYSTEM	0.04	0.19	0.1368	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	NFAT5--IQCE	1	25	NFAT5	2281	chr16:69600277:+	IQCE	57506	chr7:2644515:+	ONLY_REF_SPLICE	NO	10	50	0.72	0.34	0.0124	0.3109	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	A172_CENTRAL_NERVOUS_SYSTEM	0.34	0.72	0.3233	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	ABL1--GINS3	6	4	ABL1	1510	chr9:133589842:+	GINS3	31566	chr16:58438403:+	ONLY_REF_SPLICE	YES	0	77	1	0.11	0.0746	0.0497	ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	A172_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.1243	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	SUN1--POMT1	7	0	SUN1	1783	chr7:856310:+	POMT1	54923	chr9:134397434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.087	0	SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,POMT1->chr9:134378289-134399193:+,protein_O-mannosyltransferase_1	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	WWP2--PDXDC2P	7	0	WWP2	30081	chr16:69970355:+	PDXDC2P	65983	chr16:70012185:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.087	0	LOCAL_INVERSION:+:-,chr16:[34556],WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+,PDXDC2P->chr16:70010200-70099851:-,chr16:70044654-70099848:-,pyridoxal-dependent_decarboxylase_domain_containing_2,_pseudogene	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	LARS--AKAP6	6	3	LARS	14360	chr5:145531425:-	AKAP6	38807	chr14:32902666:+	ONLY_REF_SPLICE	YES	201	0	0.04	1	0.0746	0.0373	LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	A172_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PAFAH1B1--COX10-AS1	4	11	PAFAH1B1	14978	chr17:2579900:+	COX10-AS1	37757	chr17:13680666:-	ONLY_REF_SPLICE	YES	151	8	0.09	0.65	0.0497	0.1368	PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1,COX10-AS1->COX10_antisense_RNA_1,chr17:13659795-13972812:-	A172_CENTRAL_NERVOUS_SYSTEM	0.09	0.65	0.1865	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	ABL1--GINS3	5	4	ABL1	1510	chr9:133589842:+	GINS3	30165	chr16:58437002:+	ONLY_REF_SPLICE	YES	0	75	1	0.11	0.0622	0.0497	ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	A172_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	USP31--AC093627.9	5	4	USP31	1633	chr16:23159959:-	AC093627.9	33199	chr7:136271:-	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0622	0.0497	USP31->chr16:23072727-23160591:-,ubiquitin_specific_peptidase_31,AC093627.9->chr7:135853-149466:-	A172_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	USP31--AC093627.9	5	4	USP31	1633	chr16:23159959:-	AC093627.9	33202	chr7:136268:-	INCL_NON_REF_SPLICE	YES	3	0	0.75	1	0.0622	0.0497	USP31->chr16:23072727-23160591:-,ubiquitin_specific_peptidase_31,AC093627.9->chr7:135853-149466:-	A172_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	DBF4B--NMT1	4	7	DBF4B	1232	chr17:42786207:+	NMT1	21628	chr17:43138651:+	ONLY_REF_SPLICE	YES	32	0	0.26	1	0.0497	0.087	DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+,NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+	A172_CENTRAL_NERVOUS_SYSTEM	0.26	1	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTB-31N19.2--RANBP10	1	18	CTB-31N19.2	2725	chr16:21558722:-	RANBP10	17428	chr16:67768945:-	ONLY_REF_SPLICE	YES	0	25	1	0.43	0.0124	0.2238	CTB-31N19.2->chr16:21544266-21561694:-,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	A172_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.2362	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTD-2547E10.2--RANBP10	3	9	CTD-2547E10.2	1617	chr16:21531149:-	RANBP10	40242	chr16:67771938:-	ONLY_REF_SPLICE	YES	5	21	0.71	0.36	0.0373	0.1119	CTD-2547E10.2->chr16:21458004-21531765:-,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	A172_CENTRAL_NERVOUS_SYSTEM	0.36	0.71	0.1492	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	USB1--SLC6A2	1	17	USB1	3429	chr16:58036567:+	SLC6A2	19544	chr16:55690556:+	ONLY_REF_SPLICE	YES	108	0	0.14	1	0.0124	0.2114	USB1->U6_snRNA_biogenesis_phosphodiesterase_1,chr16:58033450-58055522:+,SLC6A2->chr16:55689516-55740104:+,solute_carrier_family_6_member_2	A172_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.2238	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CBFB--FUK	1	16	CBFB	3391	chr16:67070658:+	FUK	16092	chr16:70496076:+	ONLY_REF_SPLICE	YES	159	2	0.1	0.89	0.0124	0.199	{Klijn_CCL:Brain=1},CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,FUK->chr16:70488324-70514177:+,fucokinase	A172_CENTRAL_NERVOUS_SYSTEM	0.1	0.89	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	C7orf50--CCL17	2	10	C7orf50	3078	chr7:1166893:-	CCL17	19161	chr16:57448993:+	ONLY_REF_SPLICE	YES	190	5	0.06	0.71	0.0249	0.1243	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,CCL17->C-C_motif_chemokine_ligand_17,chr16:57438679-57449974:+	A172_CENTRAL_NERVOUS_SYSTEM	0.06	0.71	0.1492	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	NFAT5--IQCE	1	14	NFAT5	2281	chr16:69600277:+	IQCE	58501	chr7:2645510:+	ONLY_REF_SPLICE	YES	10	102	0.6	0.13	0.0124	0.1741	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	A172_CENTRAL_NERVOUS_SYSTEM	0.13	0.6	0.1865	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTB-31N19.2--RANBP10	2	9	CTB-31N19.2	2213	chr16:21559234:-	RANBP10	15693	chr16:67771938:-	ONLY_REF_SPLICE	YES	0	21	1	0.34	0.0249	0.1119	CTB-31N19.2->chr16:21544266-21561694:-,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	A172_CENTRAL_NERVOUS_SYSTEM	0.34	1	0.1368	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	2	8	AP003900.6	2187	chr21:11172043:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0249	0.0995	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A172_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.1244	TRUE	0	0	0	5	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PRKRIRP3--PRKG1	4	0	PRKRIRP3	3140	chr10:54173034:+	PRKG1	28737	chr10:54053675:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	PRKRIRP3->chr10:54170895-54173252:+,PRKG1->chr10:52750945-54058110:+,protein_kinase,_cGMP-dependent,_type_I	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	WWP2--AMZ1	3	2	WWP2	8568	chr16:69833198:+	AMZ1	49248	chr7:2755350:+	INCL_NON_REF_SPLICE	YES	17	2	0.23	0.71	0.0373	0.0249	WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+,AMZ1->archaelysin_family_metallopeptidase_1,chr7:2719156-2815134:+	A172_CENTRAL_NERVOUS_SYSTEM	0.23	0.71	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PIK3C3--RP1-127D3.4	3	1	PIK3C3	15488	chr18:39595530:+	RP1-127D3.4	47264	chr1:171173127:-	ONLY_REF_SPLICE	YES	31	0	0.11	1	0.0373	0.0124	PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3,RP1-127D3.4->chr1:171168383-171196927:-	A172_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PRKAR1B--FAM20C	3	1	PRKAR1B	1441	chr7:766847:-	FAM20C	30291	chr7:286381:+	ONLY_REF_SPLICE	YES	0	97	1	0.04	0.0373	0.0124	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta,FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C	A172_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CES5A--RP11-105C20.2	3	0	CES5A	15355	chr16:55890289:-	RP11-105C20.2	27548	chr16:59744199:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	CES5A->carboxylesterase_5A,chr16:55880066-55989943:-,RP11-105C20.2->chr16:59743897-59788752:-	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	SDK1--WWP2	3	0	SDK1	1437	chr7:3341516:+	WWP2	74838	chr16:69905707:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1,WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	DHX38--C9orf171	2	3	DHX38	16950	chr16:72144976:+	C9orf171	22875	chr9:135357697:+	ONLY_REF_SPLICE	YES	33	0	0.13	1	0.0249	0.0373	DHX38->DEAH-box_helicase_38,chr16:72127461-72146811:+,C9orf171->chr9:135285430-135448704:+	A172_CENTRAL_NERVOUS_SYSTEM	0.13	1	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTB-31N19.2--RANBP10	1	6	CTB-31N19.2	2725	chr16:21558722:-	RANBP10	18613	chr16:67765487:-	ONLY_REF_SPLICE	YES	0	56	1	0.11	0.0124	0.0746	CTB-31N19.2->chr16:21544266-21561694:-,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	A172_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	TAOK1--CCDC144A	1	6	TAOK1	22436	chr17:27844674:+	CCDC144A	67612	chr17:16676811:+	ONLY_REF_SPLICE	YES	80	1	0.08	0.88	0.0124	0.0746	{Klijn_CCL:Brain=1},TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,CCDC144A->chr17:16592851-16707767:+,coiled-coil_domain_containing_144A	A172_CENTRAL_NERVOUS_SYSTEM	0.08	0.88	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	EIF4A2--DDHD2	2	0	EIF4A2	5380	chr3:186505373:+	DDHD2	28993	chr8:38117558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	FAM20C--RAPGEF1	2	0	FAM20C	3327	chr7:195732:+	RAPGEF1	29994	chr9:134497385:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	{Klijn_CCL:Brain=1},FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MTMR10--TRPM1	2	0	MTMR10	1831	chr15:31282980:-	TRPM1	33460	chr15:31359390:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	LOCAL_REARRANGEMENT:-:[9454],MTMR10->chr15:31231144-31283810:-,myotubularin_related_protein_10,TRPM1->Oncogene{Bushman},chr15:31293264-31453476:-,transient_receptor_potential_cation_channel_subfamily_M_member_1	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	SAP130--PARVA	2	0	SAP130	2940	chr2:128783755:-	PARVA	29597	chr11:12495292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-,PARVA->chr11:12398732-12552348:+,parvin_alpha	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	UQCRC2--PDZD9	2	0	UQCRC2	4162	chr16:21969920:+	PDZD9	21922	chr16:22007822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	LOCAL_INVERSION:+:-:[205],UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,PDZD9->PDZ_domain_containing_9,chr16:21995186-22012433:-	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	UQCRC2--PDZD9	2	0	UQCRC2	4162	chr16:21969920:+	PDZD9	24173	chr16:22000112:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	LOCAL_INVERSION:+:-:[205],UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,PDZD9->PDZ_domain_containing_9,chr16:21995186-22012433:-	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CSNK2A2--AC093627.10	1	2	CSNK2A2	1288	chr16:58231537:-	AC093627.10	25093	chr7:153409:+	ONLY_REF_SPLICE	YES	11	5	0.21	0.38	0.0124	0.0249	CSNK2A2->casein_kinase_2_alpha_2,chr16:58191811-58231824:-,AC093627.10->chr7:149597-155465:+	A172_CENTRAL_NERVOUS_SYSTEM	0.21	0.38	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000558
HEPG2_LIVER	LMO7--UCHL3	11	10	LMO7	6975	chr13:76210862:+	UCHL3	56568	chr13:76178905:+	ONLY_REF_SPLICE	YES	15	118	0.58	0.15	0.1319	0.12	{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[14485],LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+,UCHL3->chr13:76123619-76180085:+,ubiquitin_C-terminal_hydrolase_L3	HEPG2_LIVER	0.15	0.58	0.2519	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	C10orf10--SERPINA1	6	0	C10orf10	1193	chr10:45474066:-	SERPINA1	10483	chr14:94854925:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.072	0	C10orf10->chr10:45466429-45474258:-,chromosome_10_open_reading_frame_10,SERPINA1->Oncogene{Bushman},chr14:94843084-94857030:-,serpin_family_A_member_1	HEPG2_LIVER	1	1	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	MLLT10--C10orf112	3	8	MLLT10	20170	chr10:21970305:+	C10orf112	40675	chr10:19546613:+	ONLY_REF_SPLICE	YES	54	0	0.17	1	0.036	0.096	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,C10orf112->chr10:19492779-20079330:+	HEPG2_LIVER	0.17	1	0.132	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	RPRD2--RPS28	4	0	RPRD2	2337	chr1:150337154:+	RPS28	24316	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.048	0	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HEPG2_LIVER	1	1	0.048	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	IGF2--FTL	3	0	IGF2	6236	chr11:2159953:-	FTL	17584	chr19:49468644:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	HEPG2_LIVER	1	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	RPL13--KDM2B	3	0	RPL13	1715	chr16:89627779:+	KDM2B	10019	chr12:122016788:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	RPL13->chr16:89627065-89630950:+,ribosomal_protein_L13,KDM2B->Oncogene{Bushman},chr12:121866900-122018920:-,lysine_demethylase_2B	HEPG2_LIVER	1	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	AFP--ALB	2	0	AFP	12270	chr4:74315184:+	ALB	35577	chr4:74285971:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	DGD_PARALOGS,PROTCLUST,LOCAL_REARRANGEMENT:+:[9726],AFP->alpha_fetoprotein,chr4:74296855-74321891:+,ALB->albumin,chr4:74262831-74287129:+	HEPG2_LIVER	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	C17orf76-AS1--UBAP2	2	0	C17orf76-AS1	1593	chr17:16342728:+	UBAP2	31037	chr9:33948585:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	C17orf76-AS1->chr17:16342136-16381992:+,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	HEPG2_LIVER	1	1	0.024	TRUE	0	0	0	2	0	TRUE	ACH-000739
HEPG2_LIVER	RABEP1--PABPC1	2	0	RABEP1	11707	chr17:5257785:+	PABPC1	33164	chr8:101730116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	RABEP1->Oncogene{Bushman},chr17:5185558-5289129:+,rabaptin,_RAB_GTPase_binding_effector_protein_1,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	HEPG2_LIVER	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	RP11-307P5.1--SASH1	2	0	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HEPG2_LIVER	1	1	0.024	TRUE	0	0	0	16	0	TRUE	ACH-000739
LOUNH91_LUNG	CD63--TGFBI	41	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5938	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	LOUNH91_LUNG	1	1	0.5938	TRUE	0	0	0	14	0	TRUE	ACH-000176
LOUNH91_LUNG	SLC16A1--RP11-31F15.2	17	6	SLC16A1	1979	chr1:113498657:-	RP11-31F15.2	18758	chr1:113556461:-	ONLY_REF_SPLICE	YES	160	0	0.13	1	0.2462	0.0869	LOCAL_REARRANGEMENT:-:[54674],SLC16A1->Oncogene{Bushman},chr1:113454469-113499635:-,solute_carrier_family_16_member_1,RP11-31F15.2->chr1:113554309-113615727:-	LOUNH91_LUNG	0.13	1	0.3331	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	TGFBI--POSTN	12	0	TGFBI	6352	chr5:135382704:+	POSTN	28054	chr13:38161065:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1738	0	PROTCLUST,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced,POSTN->chr13:38136720-38172981:-,periostin	LOUNH91_LUNG	1	1	0.1738	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	CTD-2544M6.1--LINC00923	8	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	10269	chr15:98301891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1159	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	LOUNH91_LUNG	1	1	0.1159	TRUE	0	3	0	6	3	TRUE	ACH-000176
LOUNH91_LUNG	SLC16A1--RP11-31F15.2	3	6	SLC16A1	1979	chr1:113498657:-	RP11-31F15.2	18762	chr1:113556457:-	INCL_NON_REF_SPLICE	YES	160	0	0.05	1	0.0434	0.0869	LOCAL_REARRANGEMENT:-:[54674],SLC16A1->Oncogene{Bushman},chr1:113454469-113499635:-,solute_carrier_family_16_member_1,RP11-31F15.2->chr1:113554309-113615727:-	LOUNH91_LUNG	0.05	1	0.1303	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	CDC73--AXDND1	3	0	CDC73	9616	chr1:193117095:+	AXDND1	49423	chr1:179494469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0434	0	CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+,AXDND1->axonemal_dynein_light_chain_domain_containing_1,chr1:179334855-179523870:+	LOUNH91_LUNG	1	1	0.0434	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	CDH4--NME1	1	5	CDH4	5876	chr20:60348238:+	NME1	28193	chr17:49233012:+	ONLY_REF_SPLICE	YES	10	70	0.38	0.08	0.0145	0.0724	CDH4->cadherin_4,chr20:59827482-60515673:+,NME1->NME/NM23_nucleoside_diphosphate_kinase_1,chr17:49230897-49239789:+	LOUNH91_LUNG	0.08	0.38	0.0869	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	CLIC4--ATP1B1	2	0	CLIC4	1269	chr1:25072116:+	ATP1B1	19595	chr1:169094122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,ATP1B1->ATPase_Na+/K+_transporting_subunit_beta_1,chr1:169074935-169101960:+	LOUNH91_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	RP11-313P13.3--BAZ1B	2	0	RP11-313P13.3	11471	chr7:72515008:+	BAZ1B	27180	chr7:72884813:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	RP11-313P13.3->chr7:72476064-72555749:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	LOUNH91_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	SERTAD1--CAPN2	2	0	SERTAD1	1159	chr19:40931774:-	CAPN2	21947	chr1:223946972:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	SERTAD1->SERTA_domain_containing_1,chr19:40927499-40931932:-,CAPN2->calpain_2,chr1:223889295-223963720:+	LOUNH91_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000176
CORL88_LUNG	ACOT7--NPHP4	141	85	ACOT7	18465	chr1:6341162:-	NPHP4	42083	chr1:5947526:-	ONLY_REF_SPLICE	YES	22	11	0.91	0.95	2.0242	1.2202	{Klijn_CCL:Lung=1},ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-,NPHP4->chr1:5922871-6052533:-,nephronophthisis_4	CORL88_LUNG	0.91	0.95	3.2444	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	CCSER2--RGR	88	180	CCSER2	1223	chr10:86088564:+	RGR	28175	chr10:86007347:+	ONLY_REF_SPLICE	YES	27	0	0.91	1	1.2633	2.584	LOCAL_REARRANGEMENT:+:[68626],CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,RGR->chr10:86004809-86019716:+,retinal_G_protein_coupled_receptor	CORL88_LUNG	0.91	1	3.8473	TRUE	0	1	0	1	1	TRUE	ACH-000508
CORL88_LUNG	CCSER2--RGR	73	148	CCSER2	1223	chr10:86088564:+	RGR	28225	chr10:86007397:+	ONLY_REF_SPLICE	YES	27	32	0.89	0.87	1.048	2.1247	LOCAL_REARRANGEMENT:+:[68626],CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,RGR->chr10:86004809-86019716:+,retinal_G_protein_coupled_receptor	CORL88_LUNG	0.87	0.89	3.1727	TRUE	0	1	0	1	1	TRUE	ACH-000508
CORL88_LUNG	NLN--MAP2K3	78	82	NLN	5852	chr5:65073361:+	MAP2K3	41338	chr17:21208363:+	ONLY_REF_SPLICE	YES	112	77	0.59	0.68	1.1198	1.1772	{Klijn_CCL:Lung=1},NLN->chr5:65018023-65167553:+,neurolysin,MAP2K3->chr17:21187984-21218552:+,mitogen-activated_protein_kinase_kinase_3	CORL88_LUNG	0.59	0.68	2.297	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	NLN--MAP2K3	44	54	NLN	5852	chr5:65073361:+	MAP2K3	42871	chr17:21215454:+	ONLY_REF_SPLICE	YES	112	85	0.47	0.54	0.6317	0.7752	{Klijn_CCL:Lung=1},NLN->chr5:65018023-65167553:+,neurolysin,MAP2K3->chr17:21187984-21218552:+,mitogen-activated_protein_kinase_kinase_3	CORL88_LUNG	0.47	0.54	1.4069	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	CCSER2--RGR	46	43	CCSER2	1223	chr10:86088564:+	RGR	32171	chr10:86012613:+	ONLY_REF_SPLICE	YES	27	171	0.77	0.34	0.6604	0.6173	LOCAL_REARRANGEMENT:+:[68626],CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,RGR->chr10:86004809-86019716:+,retinal_G_protein_coupled_receptor	CORL88_LUNG	0.34	0.77	1.2777	TRUE	0	1	0	1	1	TRUE	ACH-000508
CORL88_LUNG	RERE--SLC25A33	48	11	RERE	1484	chr1:8877219:-	SLC25A33	42193	chr1:9613684:+	ONLY_REF_SPLICE	YES	0	6	1	0.91	0.6891	0.1579	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC25A33->chr1:9599541-9645237:+,solute_carrier_family_25_member_33	CORL88_LUNG	0.91	1	0.847	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	PDS5B--RP11-29G8.3	26	6	PDS5B	1167	chr13:33160730:+	RP11-29G8.3	54270	chr13:76195899:+	ONLY_REF_SPLICE	YES	6	0	0.84	1	0.3733	0.0861	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,RP11-29G8.3->chr13:76123909-76381256:+	CORL88_LUNG	0.84	1	0.4594	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	CCSER2--RGR	10	66	CCSER2	1223	chr10:86088564:+	RGR	29506	chr10:86008678:+	ONLY_REF_SPLICE	YES	27	161	0.74	0.32	0.1436	0.9475	LOCAL_REARRANGEMENT:+:[68626],CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,RGR->chr10:86004809-86019716:+,retinal_G_protein_coupled_receptor	CORL88_LUNG	0.32	0.74	1.0911	TRUE	0	1	0	1	1	TRUE	ACH-000508
CORL88_LUNG	PDS5B--RP11-29G8.3	20	6	PDS5B	1167	chr13:33160730:+	RP11-29G8.3	53194	chr13:76169051:+	ONLY_REF_SPLICE	YES	6	1	0.81	0.96	0.2871	0.0861	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,RP11-29G8.3->chr13:76123909-76381256:+	CORL88_LUNG	0.81	0.96	0.3732	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	RERE--SLC25A33	16	18	RERE	2669	chr1:8852463:-	SLC25A33	42193	chr1:9613684:+	ONLY_REF_SPLICE	YES	3	6	0.92	0.85	0.2297	0.2584	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC25A33->chr1:9599541-9645237:+,solute_carrier_family_25_member_33	CORL88_LUNG	0.85	0.92	0.4881	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	PDS5B--RP11-29G8.3	13	5	PDS5B	1167	chr13:33160730:+	RP11-29G8.3	56426	chr13:76287318:+	ONLY_REF_SPLICE	YES	6	5	0.75	0.78	0.1866	0.0718	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,RP11-29G8.3->chr13:76123909-76381256:+	CORL88_LUNG	0.75	0.78	0.2584	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	CAPZA2--TPK1	12	5	CAPZA2	3371	chr7:116502704:+	TPK1	27650	chr7:144463044:-	ONLY_REF_SPLICE	YES	22	0	0.44	1	0.1723	0.0718	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,TPK1->Oncogene{Bushman},chr7:144149034-144533488:-,thiamin_pyrophosphokinase_1	CORL88_LUNG	0.44	1	0.2441	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	PDS5B--RP11-29G8.3	12	4	PDS5B	1167	chr13:33160730:+	RP11-29G8.3	57497	chr13:76301165:+	ONLY_REF_SPLICE	YES	6	15	0.73	0.52	0.1723	0.0574	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,RP11-29G8.3->chr13:76123909-76381256:+	CORL88_LUNG	0.52	0.73	0.2297	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	JPH1--ZMYM6	11	4	JPH1	3180	chr8:75227096:-	ZMYM6	15371	chr1:35486068:-	ONLY_REF_SPLICE	YES	60	102	0.2	0.13	0.1579	0.0574	JPH1->chr8:75146935-75233563:-,junctophilin_1,ZMYM6->chr1:35447134-35497342:-,chr1:35449523-35497569:-,zinc_finger_MYM-type_containing_6	CORL88_LUNG	0.13	0.2	0.2153	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	CAPZA2--TPK1	10	5	CAPZA2	3371	chr7:116502704:+	TPK1	26164	chr7:144532711:-	ONLY_REF_SPLICE	YES	22	0	0.41	1	0.1436	0.0718	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,TPK1->Oncogene{Bushman},chr7:144149034-144533488:-,thiamin_pyrophosphokinase_1	CORL88_LUNG	0.41	1	0.2154	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	ARHGAP24--NENF	9	8	ARHGAP24	6161	chr4:86643125:+	NENF	31904	chr1:212617681:+	ONLY_REF_SPLICE	YES	2	84	0.89	0.17	0.1292	0.1148	{Klijn_CCL:Lung=1},ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,NENF->chr1:212606229-212619714:+,neudesin_neurotrophic_factor	CORL88_LUNG	0.17	0.89	0.244	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	PRKAA1--EGFLAM	9	7	PRKAA1	6692	chr5:40769518:-	EGFLAM	30659	chr5:38409106:+	ONLY_REF_SPLICE	YES	144	0	0.1	1	0.1292	0.1005	PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1,EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+	CORL88_LUNG	0.1	1	0.2297	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	ACOT7--NPHP4	7	14	ACOT7	18465	chr1:6341162:-	NPHP4	46665	chr1:5940299:-	ONLY_REF_SPLICE	YES	22	50	0.49	0.3	0.1005	0.201	{Klijn_CCL:Lung=1},ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-,NPHP4->chr1:5922871-6052533:-,nephronophthisis_4	CORL88_LUNG	0.3	0.49	0.3015	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	NLN--MAP2K3	4	20	NLN	5852	chr5:65073361:+	MAP2K3	44011	chr17:21216804:+	ONLY_REF_SPLICE	YES	112	118	0.18	0.17	0.0574	0.2871	{Klijn_CCL:Lung=1},NLN->chr5:65018023-65167553:+,neurolysin,MAP2K3->chr17:21187984-21218552:+,mitogen-activated_protein_kinase_kinase_3	CORL88_LUNG	0.17	0.18	0.3445	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	RERE--SLC25A33	2	18	RERE	5242	chr1:8763114:-	SLC25A33	42193	chr1:9613684:+	ONLY_REF_SPLICE	YES	15	6	0.57	0.77	0.0287	0.2584	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC25A33->chr1:9599541-9645237:+,solute_carrier_family_25_member_33	CORL88_LUNG	0.57	0.77	0.2871	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	BAGE2--AP003900.6	5	3	BAGE2	12991	chr21:11021110:-	AP003900.6	25223	chr21:11173891:+	ONLY_REF_SPLICE	YES	16	4	0.33	0.67	0.0718	0.0431	LOCAL_INVERSION:-:+:[70740],BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,AP003900.6->chr21:11169720-11184046:+	CORL88_LUNG	0.33	0.67	0.1149	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	ARHGAP24--NENF	1	10	ARHGAP24	6161	chr4:86643125:+	NENF	30843	chr1:212615907:+	ONLY_REF_SPLICE	YES	2	67	0.85	0.14	0.0144	0.1436	{Klijn_CCL:Lung=1},ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,NENF->chr1:212606229-212619714:+,neudesin_neurotrophic_factor	CORL88_LUNG	0.14	0.85	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	DNAJC3-AS1--EXOC2	3	2	DNAJC3-AS1	2074	chr13:96328106:-	EXOC2	19348	chr6:610178:-	ONLY_REF_SPLICE	YES	13	41	0.28	0.11	0.0431	0.0287	DNAJC3-AS1->DNAJC3_antisense_RNA_1_(head_to_head),chr13:96300987-96329179:-,EXOC2->chr6:485133-693117:-,exocyst_complex_component_2	CORL88_LUNG	0.11	0.28	0.0718	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	PDS5B--RP11-29G8.3	2	2	PDS5B	1167	chr13:33160730:+	RP11-29G8.3	58567	chr13:76335068:+	ONLY_REF_SPLICE	YES	6	68	0.4	0.06	0.0287	0.0287	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,RP11-29G8.3->chr13:76123909-76381256:+	CORL88_LUNG	0.06	0.4	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	ACN9--DYNC1I1	2	0	ACN9	2308	chr7:96747209:+	DYNC1I1	19085	chr7:95499195:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ACN9->chr7:96745902-96811075:+,DYNC1I1->chr7:95401866-95739634:+,dynein_cytoplasmic_1_intermediate_chain_1	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	C17orf75--LMBR1L	2	0	C17orf75	5683	chr17:30665227:-	LMBR1L	23438	chr12:49494429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	C17orf75->chr17:30651584-30677042:-,chromosome_17_open_reading_frame_75,LMBR1L->chr12:49490919-49504683:-,limb_development_membrane_protein_1_like	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	C1orf63--RHEB	2	0	C1orf63	2174	chr1:25663531:-	RHEB	24150	chr7:151188100:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	CWF19L2--BUD13	2	0	CWF19L2	5600	chr11:107312229:-	BUD13	26751	chr11:116640938:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-,BUD13->BUD13_homolog,chr11:116618886-116643704:-	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	EMG1--ATP5S	2	0	EMG1	2414	chr12:7080253:+	ATP5S	14490	chr14:50781309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,ATP5S->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_s_(factor_B),chr14:50779044-50802276:+	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	ERCC6--LPGAT1	2	0	ERCC6	5243	chr10:50736463:-	LPGAT1	33835	chr1:211966532:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ERCC6->Oncogene{Bushman},chr10:50663414-50747584:-,excision_repair_cross-complementation_group_6,LPGAT1->chr1:211916799-212004114:-,lysophosphatidylglycerol_acyltransferase_1	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	FBXO3--SLC35B2	2	0	FBXO3	10396	chr11:33777317:-	SLC35B2	28264	chr6:44223381:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	FBXO3->F-box_protein_3,chr11:33762485-33796089:-,SLC35B2->chr6:44221833-44225291:-,solute_carrier_family_35_member_B2	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	HAUS1--SMAD2	2	0	HAUS1	2037	chr18:43685334:+	SMAD2	31170	chr18:45375058:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+,SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	PRR4--ATF7IP	2	0	PRR4	1192	chr12:11324021:-	ATF7IP	35070	chr12:14576843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	QDPR--GOLGA8A	2	0	QDPR	4087	chr4:17506002:-	GOLGA8A	31057	chr15:34690930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	QDPR->chr4:17461884-17513857:-,quinoid_dihydropteridine_reductase,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	QDPR--GOLGA8A	2	0	QDPR	4087	chr4:17506002:-	GOLGA8A	20465	chr15:34837154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	QDPR->chr4:17461884-17513857:-,quinoid_dihydropteridine_reductase,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	SEH1L--USP34	2	0	SEH1L	18361	chr18:12984189:+	USP34	72001	chr2:61463524:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	SEH1L->SEH1_like_nucleoporin,chr18:12947132-12987535:+,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	SF1--BAZ2B	2	0	SF1	3289	chr11:64543970:-	BAZ2B	31105	chr2:160304920:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx&tcga_normals:1/3694=0.03%,SF1->chr11:64532078-64546258:-,splicing_factor_1,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	SPC25--STK39	2	0	SPC25	8048	chr2:169730095:-	STK39	20136	chr2:168997268:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	SPC25->SPC25,_NDC80_kinetochore_complex_component,chr2:169690642-169769881:-,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	BAGE2--AP003900.6	1	3	BAGE2	13288	chr21:11020813:-	AP003900.6	24158	chr21:11171979:+	ONLY_REF_SPLICE	YES	9	3	0.31	0.57	0.0144	0.0431	LOCAL_INVERSION:-:+:[70740],BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,AP003900.6->chr21:11169720-11184046:+	CORL88_LUNG	0.31	0.57	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	VWDE--PHF14	1	1	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	NO	5	97	0.29	0.02	0.0144	0.0144	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CORL88_LUNG	0.02	0.29	0.0288	TRUE	0	6	0	17	2	TRUE	ACH-000508
TIG3TD_FIBROBLAST	CTB-113P19.1--FTL	5	2	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0632	0.0253	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	TIG3TD_FIBROBLAST	0.88	1	0.0885	TRUE	0	2	0	13	2	TRUE	ACH-001207
TIG3TD_FIBROBLAST	CTGF--ACTB	5	1	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	148	0	0.04	1	0.0632	0.0126	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TIG3TD_FIBROBLAST	0.04	1	0.0758	TRUE	0	0	0	9	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	VIM--TUBB4B	5	0	VIM	2175	chr10:17271432:+	TUBB4B	13784	chr9:140137244:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	VIM->chr10:17270258-17279592:+,vimentin,TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb	TIG3TD_FIBROBLAST	1	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	CTGF--ACTB	4	2	CTGF	1204	chr6:132272310:-	ACTB	10614	chr7:5570232:-	INCL_NON_REF_SPLICE	YES	66	0	0.08	1	0.0505	0.0253	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TIG3TD_FIBROBLAST	0.08	1	0.0758	TRUE	0	0	0	9	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	RPS23--ACTB	3	0	RPS23	1766	chr5:81573631:-	ACTB	12635	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	GTEx&tcga_normals:1/3694=0.03%,RPS23->chr5:81569177-81574396:-,ribosomal_protein_S23,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TIG3TD_FIBROBLAST	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13337	chr9:35689885:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	TIG3TD_FIBROBLAST	1	1	0.0379	TRUE	0	0	0	8	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	VIM--TPM2	3	0	VIM	2142	chr10:17271399:+	TPM2	13302	chr9:35689920:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	TIG3TD_FIBROBLAST	1	1	0.0379	TRUE	0	0	0	8	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	ATF6B--MYO19	2	0	ATF6B	4790	chr6:32088548:-	MYO19	27908	chr17:34867294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,MYO19->chr17:34851477-34899284:-,myosin_XIX	TIG3TD_FIBROBLAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	ATG4B--FAF2	2	0	ATG4B	12057	chr2:242608100:+	FAF2	32368	chr5:175933769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+,FAF2->Fas_associated_factor_family_member_2,chr5:175874629-175937075:+	TIG3TD_FIBROBLAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	NAALADL2--FNDC3B	2	0	NAALADL2	12723	chr3:174455536:+	FNDC3B	46357	chr3:171830242:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+,FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B	TIG3TD_FIBROBLAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	PDE4B--CACNA2D1	2	0	PDE4B	2847	chr1:66379039:+	CACNA2D1	35290	chr7:81978965:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	PDE4B->chr1:66258197-66840259:+,phosphodiesterase_4B,CACNA2D1->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_1,chr7:81575760-82073114:-	TIG3TD_FIBROBLAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	RNF19B--PRMT7	2	0	RNF19B	1635	chr1:33429652:-	PRMT7	20747	chr16:68358586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	RNF19B->chr1:33402046-33430286:-,ring_finger_protein_19B,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	TIG3TD_FIBROBLAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-001207
NCIH2171_LUNG	PVT1--CHD7	675	514	PVT1	10746	chr8:128951922:+	CHD7	34736	chr8:61707545:+	ONLY_REF_SPLICE	YES	15	50	0.99	0.96	10.6645	8.1208	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.96	0.99	18.7853	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	253	429	PVT1	1202	chr8:128806980:+	SLC7A7	36644	chr14:23282649:-	ONLY_REF_SPLICE	YES	577	43	0.54	0.94	3.9972	6.7779	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.54	0.94	10.7751	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	202	596	PVT1	1202	chr8:128806980:+	SLC7A7	34887	chr14:23284660:-	ONLY_REF_SPLICE	YES	577	0	0.58	1	3.1914	9.4164	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.58	1	12.6078	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	ENO2--ACRBP	231	208	ENO2	5418	chr12:7027326:+	ACRBP	13267	chr12:6756178:-	ONLY_REF_SPLICE	YES	2588	12	0.15	0.97	3.6496	3.2862	{Klijn_CCL:Lung=1},ENO2->chr12:7022909-7032861:+,enolase_2,ACRBP->acrosin_binding_protein,chr12:6747241-6756626:-	NCIH2171_LUNG	0.15	0.97	6.9358	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	143	234	PVT1	8346	chr8:128903244:+	CHD7	34736	chr8:61707545:+	ONLY_REF_SPLICE	YES	235	50	0.62	0.88	2.2593	3.697	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.62	0.88	5.9563	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	27	633	PVT1	2520	chr8:128808317:+	SLC7A7	34887	chr14:23284660:-	ONLY_REF_SPLICE	YES	561	0	0.54	1	0.4266	10.0009	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.54	1	10.4275	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	17	616	PVT1	2457	chr8:128808254:+	SLC7A7	34887	chr14:23284660:-	ONLY_REF_SPLICE	YES	552	0	0.53	1	0.2686	9.7323	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.53	1	10.0009	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CCNB1IP1	118	129	PVT1	1202	chr8:128806980:+	CCNB1IP1	31291	chr14:20797532:-	ONLY_REF_SPLICE	YES	577	8	0.3	0.97	1.8643	2.0381	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NCIH2171_LUNG	0.3	0.97	3.9024	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	1	596	PVT1	1202	chr8:128806980:+	SLC7A7	32742	chr14:23288965:-	ONLY_REF_SPLICE	YES	577	0	0.51	1	0.0158	9.4164	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.51	1	9.4322	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	115	123	PVT1	1202	chr8:128806980:+	SLC7A7	38609	chr14:23249260:-	ONLY_REF_SPLICE	YES	577	475	0.29	0.33	1.8169	1.9433	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.29	0.33	3.7602	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	12	458	PVT1	2520	chr8:128808317:+	SLC7A7	36644	chr14:23282649:-	ONLY_REF_SPLICE	YES	561	43	0.46	0.92	0.1896	7.2361	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.46	0.92	7.4257	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	8	444	PVT1	2457	chr8:128808254:+	SLC7A7	36644	chr14:23282649:-	ONLY_REF_SPLICE	YES	552	43	0.45	0.91	0.1264	7.0149	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.45	0.91	7.1413	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	CACNA1C--SPSB2	88	56	CACNA1C	5158	chr12:2229596:+	SPSB2	69114	chr12:6986764:-	ONLY_REF_SPLICE	YES	8	10	0.95	0.94	1.3903	0.8848	CACNA1C->calcium_voltage-gated_channel_subunit_alpha1_C,chr12:2079952-2802108:+,SPSB2->chr12:6980099-6998522:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_2	NCIH2171_LUNG	0.94	0.95	2.2751	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PICALM--CCDC81	68	48	PICALM	23636	chr11:85685751:-	CCDC81	35323	chr11:86106376:+	ONLY_REF_SPLICE	YES	437	12	0.21	0.91	1.0743	0.7584	{Klijn_CCL:Lung=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81	NCIH2171_LUNG	0.21	0.91	1.8327	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CCNB1IP1	57	54	PVT1	1202	chr8:128806980:+	CCNB1IP1	32491	chr14:20794952:-	ONLY_REF_SPLICE	YES	577	399	0.16	0.22	0.9006	0.8532	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NCIH2171_LUNG	0.16	0.22	1.7538	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	TPX2--HM13	52	43	TPX2	2458	chr20:30330450:+	HM13	27706	chr20:30125982:+	ONLY_REF_SPLICE	YES	443	290	0.18	0.25	0.8216	0.6794	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	NCIH2171_LUNG	0.18	0.25	1.501	TRUE	0	0	0	2	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	10	150	PVT1	10746	chr8:128951922:+	CHD7	35878	chr8:61712947:+	ONLY_REF_SPLICE	YES	15	209	0.91	0.43	0.158	2.3699	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.43	0.91	2.5279	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CCNB1IP1	10	142	PVT1	2457	chr8:128808254:+	CCNB1IP1	31291	chr14:20797532:-	ONLY_REF_SPLICE	YES	552	8	0.22	0.95	0.158	2.2435	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NCIH2171_LUNG	0.22	0.95	2.4015	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CCNB1IP1	8	148	PVT1	2520	chr8:128808317:+	CCNB1IP1	31291	chr14:20797532:-	ONLY_REF_SPLICE	YES	561	8	0.22	0.95	0.1264	2.3383	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NCIH2171_LUNG	0.22	0.95	2.4647	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	12	127	PVT1	2520	chr8:128808317:+	SLC7A7	38609	chr14:23249260:-	ONLY_REF_SPLICE	YES	561	475	0.2	0.23	0.1896	2.0065	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.2	0.23	2.1961	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	16	72	PVT1	8346	chr8:128903244:+	CHD7	35878	chr8:61712947:+	ONLY_REF_SPLICE	YES	235	209	0.27	0.3	0.2528	1.1375	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.27	0.3	1.3903	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	1	125	PVT1	2457	chr8:128808254:+	SLC7A7	38609	chr14:23249260:-	ONLY_REF_SPLICE	YES	552	475	0.19	0.21	0.0158	1.9749	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.19	0.21	1.9907	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PICALM--CCDC81	12	52	PICALM	23636	chr11:85685751:-	CCDC81	33843	chr11:86103583:+	ONLY_REF_SPLICE	YES	437	5	0.13	0.93	0.1896	0.8216	{Klijn_CCL:Lung=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81	NCIH2171_LUNG	0.13	0.93	1.0112	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CCNB1IP1	6	64	PVT1	2520	chr8:128808317:+	CCNB1IP1	32491	chr14:20794952:-	ONLY_REF_SPLICE	YES	561	399	0.11	0.15	0.0948	1.0112	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NCIH2171_LUNG	0.11	0.15	1.106	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CCNB1IP1	6	61	PVT1	2457	chr8:128808254:+	CCNB1IP1	32491	chr14:20794952:-	ONLY_REF_SPLICE	YES	552	399	0.11	0.14	0.0948	0.9638	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NCIH2171_LUNG	0.11	0.14	1.0586	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	7	57	PVT1	1202	chr8:128806980:+	SLC7A7	39723	chr14:23248146:-	ONLY_REF_SPLICE	YES	577	375	0.1	0.15	0.1106	0.9006	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.1	0.15	1.0112	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	1	59	PVT1	2520	chr8:128808317:+	SLC7A7	39723	chr14:23248146:-	ONLY_REF_SPLICE	YES	561	375	0.1	0.14	0.0158	0.9322	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.1	0.14	0.948	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	THSD7B--CCAT1	13	8	THSD7B	35663	chr2:138425431:+	CCAT1	42137	chr8:128221962:-	ONLY_REF_SPLICE	YES	22	0	0.49	1	0.2054	0.1264	THSD7B->chr2:137523115-138435287:+,thrombospondin_type_1_domain_containing_7B,CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding)	NCIH2171_LUNG	0.49	1	0.3318	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	7	28	PVT1	10746	chr8:128951922:+	CHD7	39139	chr8:61728946:+	ONLY_REF_SPLICE	YES	15	472	0.7	0.07	0.1106	0.4424	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.07	0.7	0.553	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	5	33	PVT1	1202	chr8:128806980:+	CHD7	34736	chr8:61707545:+	ONLY_REF_SPLICE	YES	577	50	0.06	0.43	0.079	0.5214	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.06	0.43	0.6004	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	RP11-382A18.2--YTHDF3	11	4	RP11-382A18.2	1162	chr8:128351680:+	YTHDF3	14524	chr8:64122241:+	ONLY_REF_SPLICE	YES	0	330	1	0.04	0.1738	0.0632	RP11-382A18.2->chr8:128351519-128404876:+,YTHDF3->YTH_N6-methyladenosine_RNA_binding_protein_3,chr8:64081112-64125346:+	NCIH2171_LUNG	0.04	1	0.237	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	AC022182.1--C3AR1	10	6	AC022182.1	8857	chr8:61879028:+	C3AR1	13197	chr12:8212791:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.158	0.0948	AC022182.1->chr8:61822612-61879116:+,C3AR1->Oncogene{Bushman},chr12:8210898-8219067:-,complement_component_3a_receptor_1	NCIH2171_LUNG	1	1	0.2528	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	FBRSL1--SNAP29	11	0	FBRSL1	24302	chr12:133161403:+	SNAP29	33876	chr22:21242621:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1738	0	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,SNAP29->chr22:21213271-21245506:+,synaptosome_associated_protein_29kDa	NCIH2171_LUNG	1	1	0.1738	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	1	40	PVT1	10746	chr8:128951922:+	CHD7	38083	chr8:61720776:+	ONLY_REF_SPLICE	YES	15	469	0.73	0.08	0.0158	0.632	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.08	0.73	0.6478	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	RPAIN--TUBB	11	0	RPAIN	2822	chr17:5324786:+	TUBB	17601	chr6:30690314:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1738	0	RPAIN->RPA_interacting_protein,chr17:5322961-5336196:+,TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	NCIH2171_LUNG	1	1	0.1738	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	1	33	PVT1	2520	chr8:128808317:+	CHD7	34736	chr8:61707545:+	ONLY_REF_SPLICE	NO	560	50	0.06	0.4	0.0158	0.5214	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.06	0.4	0.5372	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	EED--RP11-382A18.2	7	8	EED	8639	chr11:85975305:+	RP11-382A18.2	20024	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	366	0	0.04	1	0.1106	0.1264	EED->chr11:85955586-85989855:+,embryonic_ectoderm_development,RP11-382A18.2->chr8:128351519-128404876:+	NCIH2171_LUNG	0.04	1	0.237	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	SENP2--MAP3K13	7	3	SENP2	9004	chr3:185327138:+	MAP3K13	54697	chr3:185205396:+	INCL_NON_REF_SPLICE	YES	110	14	0.08	0.42	0.1106	0.0474	LOCAL_REARRANGEMENT:+:[93399],SENP2->SUMO1/sentrin/SMT3_specific_peptidase_2,chr3:185300284-185351339:+,MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13	NCIH2171_LUNG	0.08	0.42	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PICALM--CCDC81	2	21	PICALM	19502	chr11:85692172:-	CCDC81	35323	chr11:86106376:+	ONLY_REF_SPLICE	YES	502	12	0.04	0.66	0.0316	0.3318	{Klijn_CCL:Lung=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81	NCIH2171_LUNG	0.04	0.66	0.3634	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	USP48--WNT4	5	0	USP48	1783	chr1:22109317:-	WNT4	40253	chr1:22456344:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.079	0	USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48,WNT4->Wnt_family_member_4,chr1:22443798-22470462:-	NCIH2171_LUNG	1	1	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	ABHD16A--FKBPL	4	3	ABHD16A	10981	chr6:31655818:-	FKBPL	15511	chr6:32097631:-	ONLY_REF_SPLICE	YES	45	32	0.13	0.18	0.0632	0.0474	{Klijn_CCL:Lung=1},ABHD16A->abhydrolase_domain_containing_16A,chr6:31654726-31671221:-,FKBPL->FK506_binding_protein_like,chr6:32096484-32098068:-	NCIH2171_LUNG	0.13	0.18	0.1106	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	CTD-2034I4.1--CTD-2034I4.2	4	0	CTD-2034I4.1	1098	chr15:81719886:+	CTD-2034I4.2	12876	chr15:81980751:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0	CTD-2034I4.1->chr15:81719789-82047558:+,CTD-2034I4.2->chr15:81846344-81989121:+	NCIH2171_LUNG	1	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	CACNA1C--SPSB2	2	5	CACNA1C	5158	chr12:2229596:+	SPSB2	72145	chr12:6982161:-	ONLY_REF_SPLICE	YES	8	27	0.47	0.21	0.0316	0.079	CACNA1C->calcium_voltage-gated_channel_subunit_alpha1_C,chr12:2079952-2802108:+,SPSB2->chr12:6980099-6998522:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_2	NCIH2171_LUNG	0.21	0.47	0.1106	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	DOCK3--RNF123	3	0	DOCK3	2144	chr3:50816189:+	RNF123	77430	chr3:49758233:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0474	0	DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3,RNF123->chr3:49726932-49758962:+,ring_finger_protein_123	NCIH2171_LUNG	1	1	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	AIMP1--RP11-66N24.4	2	0	AIMP1	4299	chr4:107248721:+	RP11-66N24.4	14518	chr14:23982426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	AIMP1->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_1,chr4:107236701-107270383:+,RP11-66N24.4->chr14:23980969-24029987:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	ASPH--CHD7	2	0	ASPH	8053	chr8:62593527:-	CHD7	59546	chr8:61728946:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	C14orf64--VAPB	2	0	C14orf64	1148	chr14:98444314:-	VAPB	16417	chr20:56993267:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	C14orf64->chr14:98391947-98444461:-,VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	CBX5--GNAS	2	0	CBX5	1095	chr12:54673792:-	GNAS	37563	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},CBX5->chr12:54624724-54673886:-,chromobox_5,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	1	0	3	1	TRUE	ACH-000525
NCIH2171_LUNG	CTD-2006C1.2--WDR62	2	0	CTD-2006C1.2	3469	chr19:12112637:+	WDR62	47003	chr19:36593654:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	CTD-2006C1.2->chr19:12098432-12157090:+,WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	CTD-2034I4.1--CTD-2034I4.2	2	0	CTD-2034I4.1	1098	chr15:81719886:+	CTD-2034I4.2	11761	chr15:81960509:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	CTD-2034I4.1->chr15:81719789-82047558:+,CTD-2034I4.2->chr15:81846344-81989121:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	FAM120B--PSMB1	2	0	FAM120B	3590	chr6:170615930:+	PSMB1	23731	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	NCIH2171_LUNG	1	1	0.0316	TRUE	0	2	0	5	0	TRUE	ACH-000525
NCIH2171_LUNG	KIAA1211--NOP58	2	0	KIAA1211	2203	chr4:57045596:+	NOP58	33281	chr2:203160397:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	KIAA1211->KIAA1211,chr4:57036361-57194791:+,NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	LUZP1--TCEA3	2	0	LUZP1	2577	chr1:23495259:-	TCEA3	21960	chr1:23744502:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,TCEA3->chr1:23707554-23751233:-,transcription_elongation_factor_A3	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PLCB1--KCNJ3	2	0	PLCB1	3721	chr20:8352097:+	KCNJ3	55409	chr2:155711239:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1,KCNJ3->chr2:155554811-155714863:+,potassium_voltage-gated_channel_subfamily_J_member_3	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PRRC2B--PPAPDC3	2	0	PRRC2B	5695	chr9:134314448:+	PPAPDC3	44222	chr9:134183310:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[84831],PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,PPAPDC3->chr9:134165081-134184649:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	STX5--FANCA	2	0	STX5	6582	chr11:62591638:-	FANCA	30301	chr16:89842223:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	STX5->chr11:62574369-62599560:-,syntaxin_5,FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	TASP1--CCDC91	2	0	TASP1	9330	chr20:13567897:-	CCDC91	41226	chr12:28458582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	TASP1->chr20:13246709-13619587:-,taspase_1,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	XRCC6--ST13	2	0	XRCC6	3081	chr22:42024234:+	ST13	23244	chr22:41236696:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	ATL2--HNRNPLL	1	2	ATL2	6688	chr2:38570410:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	NO	63	112	0.05	0.03	0.0158	0.0316	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	NCIH2171_LUNG	0.03	0.05	0.0474	TRUE	0	5	0	8	2	TRUE	ACH-000525
NCIH2171_LUNG	AC007682.1--NRXN1	1	1	AC007682.1	2514	chr2:51279592:+	NRXN1	24293	chr2:51153093:-	ONLY_REF_SPLICE	YES	3	23	0.4	0.08	0.0158	0.0158	LOCAL_INVERSION:+:-:[65],AC007682.1->chr2:51259739-52635055:+,NRXN1->chr2:50145643-51259674:-,neurexin_1	NCIH2171_LUNG	0.08	0.4	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	RPL32P3--CPNE4	1	1	RPL32P3	4754	chr3:129112478:-	CPNE4	14831	chr3:131759165:-	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.0158	0.0158	RPL32P3->chr3:129101765-129118498:-,ribosomal_protein_L32_pseudogene_3,CPNE4->chr3:131252399-132004254:-,copine_4	NCIH2171_LUNG	0.08	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
RKN_SOFT_TISSUE	EIF4H--ELN	570	15	EIF4H	1198	chr7:73588772:+	ELN	32519	chr7:73477483:+	ONLY_REF_SPLICE	YES	9	0	0.98	1	5.7844	0.1522	EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H,ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin	RKN_SOFT_TISSUE	0.98	1	5.9366	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	NCLN--GNA11	242	133	NCLN	3611	chr19:3193426:+	GNA11	18010	chr19:3110147:+	ONLY_REF_SPLICE	YES	130	179	0.74	0.68	2.4558	1.3497	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[61559],NCLN->chr19:3185561-3209573:+,nicalin,GNA11->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_11,Oncogene{Bushman},OncomapV4_panel,chr19:3094408-3124002:+	RKN_SOFT_TISSUE	0.68	0.74	3.8055	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	EIF4H--ELN	249	15	EIF4H	1198	chr7:73588772:+	ELN	31480	chr7:73475431:+	ONLY_REF_SPLICE	YES	9	0	0.97	1	2.5269	0.1522	EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H,ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin	RKN_SOFT_TISSUE	0.97	1	2.6791	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	CCDC91--OVCH1-AS1	183	126	CCDC91	24767	chr12:28605587:+	OVCH1-AS1	37516	chr12:29614667:+	ONLY_REF_SPLICE	YES	238	0	0.56	1	1.8571	1.2787	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,OVCH1-AS1->OVCH1_antisense_RNA_1,chr12:29542227-29640421:+	RKN_SOFT_TISSUE	0.56	1	3.1358	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	PPP3CC--SLC39A14	138	76	PPP3CC	3311	chr8:22333137:+	SLC39A14	25379	chr8:22262209:+	ONLY_REF_SPLICE	YES	32	398	0.87	0.35	1.4004	0.7713	LOCAL_REARRANGEMENT:+:[6690],PPP3CC->chr8:22298332-22398652:+,protein_phosphatase_3_catalytic_subunit_gamma,SLC39A14->chr8:22224762-22291642:+,solute_carrier_family_39_member_14	RKN_SOFT_TISSUE	0.35	0.87	2.1717	TRUE	0	1	0	1	1	TRUE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	76	79	PTP4A2	11185	chr1:32381496:-	CLDN16	23854	chr3:190088682:+	ONLY_REF_SPLICE	YES	675	0	0.19	1	0.7713	0.8017	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.19	1	1.573	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	NCLN--GNA11	75	37	NCLN	1652	chr19:3186212:+	GNA11	18010	chr19:3110147:+	ONLY_REF_SPLICE	YES	138	179	0.45	0.38	0.7611	0.3755	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[61559],NCLN->chr19:3185561-3209573:+,nicalin,GNA11->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_11,Oncogene{Bushman},OncomapV4_panel,chr19:3094408-3124002:+	RKN_SOFT_TISSUE	0.38	0.45	1.1366	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	CCDC91--OVCH1-AS1	73	22	CCDC91	24767	chr12:28605587:+	OVCH1-AS1	40054	chr12:29639819:+	ONLY_REF_SPLICE	YES	238	2	0.29	0.98	0.7408	0.2233	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,OVCH1-AS1->OVCH1_antisense_RNA_1,chr12:29542227-29640421:+	RKN_SOFT_TISSUE	0.29	0.98	0.9641	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	RFTN1--DAZL	67	18	RFTN1	3399	chr3:16535232:-	DAZL	34630	chr3:16633655:-	ONLY_REF_SPLICE	YES	119	0	0.42	1	0.6799	0.1827	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],LOCAL_REARRANGEMENT:-:[72766],RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like	RKN_SOFT_TISSUE	0.42	1	0.8626	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	BCAT1--TSPAN11	45	18	BCAT1	10920	chr12:24995016:-	TSPAN11	28865	chr12:31106915:+	ONLY_REF_SPLICE	YES	647	0	0.09	1	0.4567	0.1827	{Klijn_CCL:Ovary=1},BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,TSPAN11->chr12:31079362-31149534:+,tetraspanin_11	RKN_SOFT_TISSUE	0.09	1	0.6394	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	CCDC91--OVCH1-AS1	19	94	CCDC91	24767	chr12:28605587:+	OVCH1-AS1	37578	chr12:29614729:+	INCL_NON_REF_SPLICE	YES	238	0	0.32	1	0.1928	0.9539	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,OVCH1-AS1->OVCH1_antisense_RNA_1,chr12:29542227-29640421:+	RKN_SOFT_TISSUE	0.32	1	1.1467	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	RP11-77I22.2--PKP2	35	26	RP11-77I22.2	1198	chr12:30908205:+	PKP2	12704	chr12:33003907:-	ONLY_REF_SPLICE	YES	4	1	0.94	0.98	0.3552	0.2638	RP11-77I22.2->chr12:30908008-30933673:+,PKP2->chr12:32943679-33049774:-,plakophilin_2	RKN_SOFT_TISSUE	0.94	0.98	0.619	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	ARHGEF12--POU2F3	33	17	ARHGEF12	4686	chr11:120278532:+	POU2F3	58808	chr11:120117158:+	ONLY_REF_SPLICE	YES	122	0	0.29	1	0.3349	0.1725	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[17134],ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	RKN_SOFT_TISSUE	0.29	1	0.5074	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	FN3KRP--FOXK2	24	23	FN3KRP	2828	chr17:80676933:+	FOXK2	29643	chr17:80559179:+	ONLY_REF_SPLICE	YES	114	117	0.29	0.29	0.2436	0.2334	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[72021],FN3KRP->chr17:80674559-80688204:+,fructosamine_3_kinase_related_protein,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	RKN_SOFT_TISSUE	0.29	0.29	0.477	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	6	80	PTP4A2	11185	chr1:32381496:-	CLDN16	23831	chr3:190088659:+	INCL_NON_REF_SPLICE	YES	675	0	0.11	1	0.0609	0.8118	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.11	1	0.8727	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	19	26	PTP4A2	11185	chr1:32381496:-	CLDN16	27611	chr3:190120126:+	ONLY_REF_SPLICE	YES	675	49	0.06	0.48	0.1928	0.2638	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.06	0.48	0.4566	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	5	80	PTP4A2	11189	chr1:32381492:-	CLDN16	23854	chr3:190088682:+	INCL_NON_REF_SPLICE	YES	711	0	0.11	1	0.0507	0.8118	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.11	1	0.8625	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	NF2--RP11-782C8.2	23	7	NF2	4890	chr22:30038274:+	RP11-782C8.2	40586	chr1:143134483:-	INCL_NON_REF_SPLICE	YES	91	0	0.25	1	0.2334	0.071	NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin),RP11-782C8.2->chr1:143118704-143211070:-	RKN_SOFT_TISSUE	0.25	1	0.3044	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	KDM4D--AMOTL1	20	11	KDM4D	2483	chr11:94708912:+	AMOTL1	21236	chr11:94583279:+	ONLY_REF_SPLICE	YES	6	63	0.84	0.33	0.203	0.1116	LOCAL_REARRANGEMENT:+:[96927],KDM4D->chr11:94706845-94732682:+,lysine_demethylase_4D,AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+	RKN_SOFT_TISSUE	0.33	0.84	0.3146	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	FN3KRP--FOXK2	19	12	FN3KRP	1214	chr17:80674772:+	FOXK2	29643	chr17:80559179:+	ONLY_REF_SPLICE	YES	188	117	0.14	0.21	0.1928	0.1218	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[72021],FN3KRP->chr17:80674559-80688204:+,fructosamine_3_kinase_related_protein,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	RKN_SOFT_TISSUE	0.14	0.21	0.3146	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	PPP3CC--SLC39A14	1	77	PPP3CC	3311	chr8:22333137:+	SLC39A14	21139	chr8:22236940:+	ONLY_REF_SPLICE	YES	32	397	0.71	0.16	0.0101	0.7814	LOCAL_REARRANGEMENT:+:[6690],PPP3CC->chr8:22298332-22398652:+,protein_phosphatase_3_catalytic_subunit_gamma,SLC39A14->chr8:22224762-22291642:+,solute_carrier_family_39_member_14	RKN_SOFT_TISSUE	0.16	0.71	0.7915	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	CAMKK2--P2RX4	18	7	CAMKK2	7496	chr12:121706441:-	P2RX4	31988	chr12:121659716:+	ONLY_REF_SPLICE	YES	55	79	0.31	0.24	0.1827	0.071	LOCAL_INVERSION:-:+:[3588],CAMKK2->Oncogene{Bushman},calcium/calmodulin-dependent_protein_kinase_kinase_2,chr12:121675497-121736111:-,P2RX4->chr12:121647660-121671909:+,purinergic_receptor_P2X_4	RKN_SOFT_TISSUE	0.24	0.31	0.2537	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	BICD1--RP11-50I19.1	18	2	BICD1	1710	chr12:32260478:+	RP11-50I19.1	25626	chr12:32160271:+	INCL_NON_REF_SPLICE	YES	475	0	0.04	1	0.1827	0.0203	LOCAL_REARRANGEMENT:+:[99400],BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,RP11-50I19.1->chr12:32160061-32160369:+	RKN_SOFT_TISSUE	0.04	1	0.203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	GMEB1--TRNAU1AP	18	1	GMEB1	1108	chr1:28995351:+	TRNAU1AP	20015	chr1:28880152:+	ONLY_REF_SPLICE	YES	0	7	1	0.73	0.1827	0.0101	LOCAL_REARRANGEMENT:+:[90193],GMEB1->chr1:28995244-29045865:+,glucocorticoid_modulatory_element_binding_protein_1,TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1	RKN_SOFT_TISSUE	0.73	1	0.1928	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	7	40	PTP4A2	11185	chr1:32381496:-	CLDN16	26404	chr3:190106026:+	INCL_NON_REF_SPLICE	YES	675	30	0.07	0.61	0.071	0.4059	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.07	0.61	0.4769	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	TSPAN15--HK1	16	4	TSPAN15	3695	chr10:71244971:+	HK1	29369	chr10:71124539:+	ONLY_REF_SPLICE	YES	26	206	0.43	0.09	0.1624	0.0406	LOCAL_REARRANGEMENT:+:[49591],TSPAN15->chr10:71211229-71267425:+,tetraspanin_15,HK1->chr10:71029740-71161638:+,hexokinase_1	RKN_SOFT_TISSUE	0.09	0.43	0.203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	CCDC91--OVCH1-AS1	2	56	CCDC91	24767	chr12:28605587:+	OVCH1-AS1	38717	chr12:29617338:+	ONLY_REF_SPLICE	YES	238	71	0.2	0.45	0.0203	0.5683	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,OVCH1-AS1->OVCH1_antisense_RNA_1,chr12:29542227-29640421:+	RKN_SOFT_TISSUE	0.2	0.45	0.5886	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	TBC1D22A--ANKRD20A14P	15	1	TBC1D22A	1228	chr22:47158745:+	ANKRD20A14P	29451	chr1:142813101:+	ONLY_REF_SPLICE	YES	28	0	0.36	1	0.1522	0.0101	TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,ANKRD20A14P->ankyrin_repeat_domain_20_family_member_A14,_pseudogene,chr1:142803532-142827235:+	RKN_SOFT_TISSUE	0.36	1	0.1623	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	3	40	PTP4A2	10092	chr1:32384571:-	CLDN16	23854	chr3:190088682:+	ONLY_REF_SPLICE	YES	652	0	0.06	1	0.0304	0.4059	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.06	1	0.4363	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	ARHGEF12--POU2F3	8	17	ARHGEF12	6313	chr11:120280159:+	POU2F3	58808	chr11:120117158:+	ONLY_REF_SPLICE	YES	134	0	0.16	1	0.0812	0.1725	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[17134],ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	RKN_SOFT_TISSUE	0.16	1	0.2537	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	1	45	PTP4A2	11185	chr1:32381496:-	CLDN16	24963	chr3:190092317:+	ONLY_REF_SPLICE	NO	675	11	0.06	0.81	0.0101	0.4567	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.06	0.81	0.4668	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	FN3KRP--FOXK2	2	23	FN3KRP	2828	chr17:80676933:+	FOXK2	27080	chr17:80553658:+	ONLY_REF_SPLICE	YES	114	127	0.18	0.16	0.0203	0.2334	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[72021],FN3KRP->chr17:80674559-80688204:+,fructosamine_3_kinase_related_protein,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	RKN_SOFT_TISSUE	0.16	0.18	0.2537	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	KDM4D--AMOTL1	4	7	KDM4D	1388	chr11:94707232:+	AMOTL1	21236	chr11:94583279:+	ONLY_REF_SPLICE	YES	5	63	0.69	0.15	0.0406	0.071	LOCAL_REARRANGEMENT:+:[96927],KDM4D->chr11:94706845-94732682:+,lysine_demethylase_4D,AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+	RKN_SOFT_TISSUE	0.15	0.69	0.1116	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	C11orf68--DRAP1	5	0	C11orf68	1088	chr11:65686501:-	DRAP1	6884	chr11:65687301:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	RKN_SOFT_TISSUE	1	1	0.0507	TRUE	0	1	0	6	1	TRUE	ACH-000505
RKN_SOFT_TISSUE	ARHGEF12--POU2F3	3	6	ARHGEF12	1198	chr11:120207984:+	POU2F3	58808	chr11:120117158:+	ONLY_REF_SPLICE	YES	78	0	0.1	1	0.0304	0.0609	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[17134],ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	RKN_SOFT_TISSUE	0.1	1	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	C11orf68--DRAP1	3	0	C11orf68	1087	chr11:65686502:-	DRAP1	6880	chr11:65687297:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	RKN_SOFT_TISSUE	1	1	0.0304	TRUE	0	1	0	6	1	TRUE	ACH-000505
RKN_SOFT_TISSUE	C11orf68--DRAP1	3	0	C11orf68	1070	chr11:65686519:-	DRAP1	6879	chr11:65687296:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	RKN_SOFT_TISSUE	1	1	0.0304	TRUE	0	1	0	6	1	TRUE	ACH-000505
RKN_SOFT_TISSUE	AGPAT4--MAP3K4	2	0	AGPAT4	2391	chr6:161653068:-	MAP3K4	23935	chr6:161455291:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Thyroid=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[12594],AGPAT4->1-acylglycerol-3-phosphate_O-acyltransferase_4,chr6:161551011-161695093:-,MAP3K4->chr6:161412759-161538417:+,mitogen-activated_protein_kinase_kinase_kinase_4	RKN_SOFT_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	ANKRD36--KANSL3	2	0	ANKRD36	18699	chr2:97833504:+	KANSL3	77473	chr2:97274801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ANKRD36->ankyrin_repeat_domain_36,chr2:97779233-97930258:+,KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-	RKN_SOFT_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	ARIH1--PKM	2	0	ARIH1	1689	chr15:72767355:+	PKM	30400	chr15:72511451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},ARIH1->ariadne_RBR_E3_ubiquitin_protein_ligase_1,chr15:72766667-72879692:+,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	RKN_SOFT_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	CLIP2--GS1-124K5.12	2	0	CLIP2	2448	chr7:73731997:+	GS1-124K5.12	33127	chr7:66019824:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+,GS1-124K5.12->chr7:66010634-66057373:-	RKN_SOFT_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	ERP29--MAPKAPK5	2	0	ERP29	1294	chr12:112451413:+	MAPKAPK5	18949	chr12:112318251:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29,MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5	RKN_SOFT_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	DOPEY2--ARHGAP8	1	2	DOPEY2	9063	chr21:37586854:+	ARHGAP8	57395	chr22:45197957:+	ONLY_REF_SPLICE	YES	10	1	0.23	0.75	0.0101	0.0203	DOPEY2->Oncogene{Bushman},chr21:37529080-37666572:+,dopey_family_member_2,ARHGAP8->Rho_GTPase_activating_protein_8,chr22:45098355-45258665:+	RKN_SOFT_TISSUE	0.23	0.75	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	KIRREL3--SIK3	1	1	KIRREL3	2916	chr11:126870351:-	SIK3	35232	chr11:116768033:-	ONLY_REF_SPLICE	NO	6	26	0.25	0.07	0.0101	0.0101	KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila),SIK3->Oncogene{Bushman},SIK_family_kinase_3,chr11:116714118-116969153:-	RKN_SOFT_TISSUE	0.07	0.25	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000505
PANC0504_PANCREAS	MAP3K13--ETV5-AS1	10	1	MAP3K13	2430	chr3:185003431:+	ETV5-AS1	35069	chr3:185798660:+	INCL_NON_REF_SPLICE	YES	29	0	0.28	1	0.1006	0.0101	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ETV5-AS1->ETV5_antisense_RNA_1,chr3:185796959-185798736:+	PANC0504_PANCREAS	0.28	1	0.1107	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	IPO11--TMEM174	3	2	IPO11	2454	chr5:61708756:+	TMEM174	45588	chr5:72469887:+	ONLY_REF_SPLICE	YES	9	2	0.36	0.71	0.0302	0.0201	IPO11->chr5:61699799-61924409:+,importin_11,TMEM174->chr5:72469022-72470970:+,transmembrane_protein_174	PANC0504_PANCREAS	0.36	0.71	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	MAP3K13--ETV5-AS1	3	1	MAP3K13	3578	chr3:185009548:+	ETV5-AS1	35069	chr3:185798660:+	INCL_NON_REF_SPLICE	YES	14	0	0.22	1	0.0302	0.0101	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ETV5-AS1->ETV5_antisense_RNA_1,chr3:185796959-185798736:+	PANC0504_PANCREAS	0.22	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	ETV5--EHHADH	3	0	ETV5	9388	chr3:185797606:-	EHHADH	26393	chr3:184966305:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	ETV5->ArcherDX_panel,ETS_variant_5,FoundationOne_panel,Oncogene{Bushman},chr3:185764097-185828107:-,EHHADH->chr3:184908412-184999778:-,enoyl-CoA,_hydratase/3-hydroxyacyl_CoA_dehydrogenase	PANC0504_PANCREAS	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	ANKS3--GLYR1	2	0	ANKS3	1223	chr16:4784157:-	GLYR1	26416	chr16:4882913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},LOCAL_REARRANGEMENT:-:[68825],ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,GLYR1->chr16:4853204-4897343:-,glyoxylate_reductase_1_homolog	PANC0504_PANCREAS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	NUFIP1--SEPT2	2	0	NUFIP1	6266	chr13:45539979:-	SEPT2	31183	chr2:242287549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NUFIP1->chr13:45513384-45563618:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_1,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	PANC0504_PANCREAS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	SGSM2--FER1L4	2	0	SGSM2	15714	chr17:2280362:+	FER1L4	23779	chr20:34194328:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	SGSM2->chr17:2240792-2284352:+,small_G_protein_signaling_modulator_2,FER1L4->chr20:34146507-34195484:-,fer-1_like_family_member_4,_pseudogene	PANC0504_PANCREAS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	IPO11--TMEM174	1	2	IPO11	5276	chr5:61718395:+	TMEM174	45588	chr5:72469887:+	ONLY_REF_SPLICE	YES	11	2	0.21	0.6	0.0101	0.0201	IPO11->chr5:61699799-61924409:+,importin_11,TMEM174->chr5:72469022-72470970:+,transmembrane_protein_174	PANC0504_PANCREAS	0.21	0.6	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000093
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX29--AY269186.1	203	63	SNX29	2139	chr16:12093215:+	AY269186.1	41476	chr3:65642:+	ONLY_REF_SPLICE	YES	14	0	0.95	1	2.6382	0.8188	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,AY269186.1->chr3:65431-66175:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	3.457	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITPR1--AKAP13	164	36	ITPR1	4338	chr3:4562778:+	AKAP13	119861	chr15:86262307:+	ONLY_REF_SPLICE	YES	26	134	0.88	0.6	2.1314	0.4679	ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1,AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.88	2.5993	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--GLUD1P2	127	11	IGH@	95370	chr14:106329408:-	GLUD1P2	141193	chr10:48980202:+	ONLY_REF_SPLICE	YES	2	1	0.99	0.99	1.6505	0.143	IGH@->Oncogene{Bushman},GLUD1P2->chr10:48952491-48980269:+,glutamate_dehydrogenase_1_pseudogene_2	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	0.99	1.7935	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSDL2--PTBP3	80	0	HSDL2	1244	chr9:115142460:+	PTBP3	21491	chr9:115060196:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.0397	0	LOCAL_INVERSION:+:-:[46270],HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0397	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FMNL1--SMURF2	66	12	FMNL1	6407	chr17:43311567:+	SMURF2	41491	chr17:62547822:-	ONLY_REF_SPLICE	YES	48	16	0.62	0.83	0.8577	0.156	FMNL1->chr17:43298811-43324687:+,formin_like_1,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.83	1.0137	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTSLP1--IGH@	63	14	CTSLP1	1099	chr10:89149862:-	IGH@	133815	chr14:106054731:-	INCL_NON_REF_SPLICE	YES	0	5	1	0.94	0.8188	0.1819	CTSLP1->cathepsin_L_pseudogene_1,chr10:89146442-89149960:-,IGH@->Oncogene{Bushman}	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	1.0007	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX29--AY269186.1	33	68	SNX29	2139	chr16:12093215:+	AY269186.1	41269	chr3:65435:+	INCL_NON_REF_SPLICE	YES	14	0	0.88	1	0.4289	0.8837	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,AY269186.1->chr3:65431-66175:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	1.3126	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--GLUD1P2	41	4	IGH@	94754	chr14:106330024:-	GLUD1P2	141193	chr10:48980202:+	ONLY_REF_SPLICE	YES	2	1	0.96	0.98	0.5328	0.052	IGH@->Oncogene{Bushman},GLUD1P2->chr10:48952491-48980269:+,glutamate_dehydrogenase_1_pseudogene_2	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.98	0.5848	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAPLN--KIAA0513	36	16	PAPLN	12655	chr14:73726253:+	KIAA0513	31368	chr16:85105389:+	ONLY_REF_SPLICE	YES	3	4	0.95	0.93	0.4679	0.2079	PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein,KIAA0513->KIAA0513,chr16:85061375-85127836:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.95	0.6758	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--GLUD1P2	39	3	IGH@	94353	chr14:106330425:-	GLUD1P2	141193	chr10:48980202:+	ONLY_REF_SPLICE	YES	2	1	0.95	0.98	0.5069	0.039	IGH@->Oncogene{Bushman},GLUD1P2->chr10:48952491-48980269:+,glutamate_dehydrogenase_1_pseudogene_2	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	0.98	0.5459	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDCD1LG2--IGH@	31	13	PDCD1LG2	7089	chr9:5563211:+	IGH@	12603	chr14:107283096:-	ONLY_REF_SPLICE	YES	72	3	0.38	0.94	0.4029	0.169	PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2,IGH@->Oncogene{Bushman}	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.94	0.5719	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GOSR1--DCAKD	31	12	GOSR1	7218	chr17:28811319:+	DCAKD	26560	chr17:43112367:-	ONLY_REF_SPLICE	YES	87	18	0.33	0.7	0.4029	0.156	GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1,DCAKD->chr17:43100708-43138473:-,dephospho-CoA_kinase_domain_containing	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.7	0.5589	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMDS--FKBP5	30	5	GMDS	8873	chr6:1960101:-	FKBP5	30378	chr6:35565181:-	ONLY_REF_SPLICE	YES	30	66	0.54	0.35	0.3899	0.065	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,FKBP5->FK506_binding_protein_5,chr6:35541362-35696360:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.54	0.4549	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERLEC1--ACYP2	28	7	ERLEC1	1329	chr2:54014509:+	ACYP2	36167	chr2:54531825:+	ONLY_REF_SPLICE	YES	159	18	0.18	0.66	0.3639	0.091	ERLEC1->chr2:54014181-54045956:+,endoplasmic_reticulum_lectin_1,ACYP2->acylphosphatase_2,chr2:54197975-54532437:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.66	0.4549	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--GLUD1P2	28	3	IGH@	93161	chr14:106331617:-	GLUD1P2	141193	chr10:48980202:+	ONLY_REF_SPLICE	YES	4	1	0.89	0.97	0.3639	0.039	IGH@->Oncogene{Bushman},GLUD1P2->chr10:48952491-48980269:+,glutamate_dehydrogenase_1_pseudogene_2	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.97	0.4029	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCAKD--CUEDC1	24	6	DCAKD	1218	chr17:43138256:-	CUEDC1	16050	chr17:55963240:-	ONLY_REF_SPLICE	YES	8	0	0.79	1	0.3119	0.078	DCAKD->chr17:43100708-43138473:-,dephospho-CoA_kinase_domain_containing,CUEDC1->CUE_domain_containing_1,Oncogene{Bushman},chr17:55938604-56032684:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.3899	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UHRF2--KDM4C	23	9	UHRF2	15827	chr9:6493932:+	KDM4C	36655	chr9:6849507:+	ONLY_REF_SPLICE	YES	99	51	0.24	0.39	0.2989	0.117	UHRF2->Oncogene{Bushman},chr9:6413151-6507054:+,ubiquitin_like_with_PHD_and_ring_finger_domains_2,KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.39	0.4159	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTL--PPP2R5A	19	18	DTL	4858	chr1:212220759:+	PPP2R5A	28627	chr1:212502477:+	ONLY_REF_SPLICE	YES	151	74	0.2	0.33	0.2469	0.2339	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.33	0.4808	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCAKD--CUEDC1	15	10	DCAKD	2519	chr17:43128729:-	CUEDC1	16050	chr17:55963240:-	ONLY_REF_SPLICE	YES	17	0	0.6	1	0.1949	0.13	DCAKD->chr17:43100708-43138473:-,dephospho-CoA_kinase_domain_containing,CUEDC1->CUE_domain_containing_1,Oncogene{Bushman},chr17:55938604-56032684:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.3249	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDCD1LG2--IGH@	9	13	PDCD1LG2	7093	chr9:5563215:+	IGH@	12603	chr14:107283096:-	INCL_NON_REF_SPLICE	YES	78	3	0.22	0.88	0.117	0.169	PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2,IGH@->Oncogene{Bushman}	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.88	0.286	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MICAL1--AK9	10	5	MICAL1	1305	chr6:109786867:-	AK9	49935	chr6:109837845:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.13	0.065	LOCAL_REARRANGEMENT:-:[26888],MICAL1->chr6:109765265-109787171:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_1,AK9->adenylate_kinase_9,chr6:109814059-110012420:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.195	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSDL2--PTBP3	11	0	HSDL2	1244	chr9:115142460:+	PTBP3	20457	chr9:115092754:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.143	0	LOCAL_INVERSION:+:-:[46270],HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.143	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAP2K1--SMAD6	8	1	MAP2K1	1611	chr15:66679765:+	SMAD6	21934	chr15:67004006:+	ONLY_REF_SPLICE	YES	67	1	0.12	0.9	0.104	0.013	MAP2K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr15:66679155-66784650:+,mitogen-activated_protein_kinase_kinase_1,SMAD6->SMAD_family_member_6,chr15:66994566-67074338:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.9	0.117	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF267--RP11-426C22.5	8	1	ZNF267	4304	chr16:31896577:+	RP11-426C22.5	19363	chr16:29228802:+	ONLY_REF_SPLICE	YES	112	4	0.07	0.69	0.104	0.013	ZNF267->chr16:31885079-31928668:+,zinc_finger_protein_267,RP11-426C22.5->chr16:29127448-29229181:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.69	0.117	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GINM1--PCMT1	6	7	GINM1	1241	chr6:149887670:+	PCMT1	17923	chr6:150111090:+	ONLY_REF_SPLICE	YES	34	242	0.28	0.05	0.078	0.091	GINM1->chr6:149887430-149912884:+,glycoprotein_integral_membrane_1,PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.28	0.169	TRUE	0	1	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCAKD--CUEDC1	6	6	DCAKD	2327	chr17:43128921:-	CUEDC1	16050	chr17:55963240:-	ONLY_REF_SPLICE	YES	13	0	0.48	1	0.078	0.078	DCAKD->chr17:43100708-43138473:-,dephospho-CoA_kinase_domain_containing,CUEDC1->CUE_domain_containing_1,Oncogene{Bushman},chr17:55938604-56032684:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.156	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERLEC1--ACYP2	5	8	ERLEC1	1329	chr2:54014509:+	ACYP2	34010	chr2:54450134:+	ONLY_REF_SPLICE	YES	159	18	0.08	0.42	0.065	0.104	ERLEC1->chr2:54014181-54045956:+,endoplasmic_reticulum_lectin_1,ACYP2->acylphosphatase_2,chr2:54197975-54532437:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.42	0.169	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-345J4.8--DHX29	6	4	RP11-345J4.8	1188	chr16:29606208:-	DHX29	36886	chr5:54585256:-	ONLY_REF_SPLICE	YES	7	40	0.59	0.2	0.078	0.052	RP11-345J4.8->chr16:29538889-29606395:-,DHX29->DEAH-box_helicase_29,chr5:54552073-54603550:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.59	0.13	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTL--PPP2R5A	2	18	DTL	4858	chr1:212220759:+	PPP2R5A	25290	chr1:212480125:+	ONLY_REF_SPLICE	YES	151	75	0.12	0.21	0.026	0.2339	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.21	0.2599	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0513--PAPLN	6	2	KIAA0513	4098	chr16:85101006:+	PAPLN	37362	chr14:73727864:+	ONLY_REF_SPLICE	YES	3	3	0.73	0.73	0.078	0.026	KIAA0513->KIAA0513,chr16:85061375-85127836:+,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.73	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GOSR1--DCAKD	3	12	GOSR1	7218	chr17:28811319:+	DCAKD	26557	chr17:43112370:-	INCL_NON_REF_SPLICE	YES	87	19	0.15	0.44	0.039	0.156	GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1,DCAKD->chr17:43100708-43138473:-,dephospho-CoA_kinase_domain_containing	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.44	0.195	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABEP2--DSTN	5	4	RABEP2	2913	chr16:28936424:-	DSTN	21465	chr20:17581383:+	ONLY_REF_SPLICE	YES	21	159	0.3	0.05	0.065	0.052	RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2,DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.3	0.117	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FMNL1--SMURF2	1	12	FMNL1	7056	chr17:43312216:+	SMURF2	41491	chr17:62547822:-	ONLY_REF_SPLICE	YES	45	16	0.22	0.45	0.013	0.156	FMNL1->chr17:43298811-43324687:+,formin_like_1,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.45	0.169	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MICAL1--AK9	3	4	MICAL1	1275	chr6:109786897:-	AK9	49935	chr6:109837845:-	INCL_NON_REF_SPLICE	YES	20	0	0.26	1	0.039	0.052	LOCAL_REARRANGEMENT:-:[26888],MICAL1->chr6:109765265-109787171:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_1,AK9->adenylate_kinase_9,chr6:109814059-110012420:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.091	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABEP2--DSTN	2	6	RABEP2	3613	chr16:28935724:-	DSTN	21465	chr20:17581383:+	ONLY_REF_SPLICE	YES	33	159	0.2	0.05	0.026	0.078	RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2,DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.2	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMURF2--ARSG	1	9	SMURF2	17516	chr17:62553726:-	ARSG	35794	chr17:66339745:+	ONLY_REF_SPLICE	YES	25	5	0.29	0.67	0.013	0.117	SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,ARSG->arylsulfatase_G,chr17:66255323-66418872:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.67	0.13	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERLEC1--ACYP2	1	7	ERLEC1	1329	chr2:54014509:+	ACYP2	35097	chr2:54494433:+	ONLY_REF_SPLICE	YES	159	18	0.05	0.31	0.013	0.091	ERLEC1->chr2:54014181-54045956:+,endoplasmic_reticulum_lectin_1,ACYP2->acylphosphatase_2,chr2:54197975-54532437:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.31	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C16orf58--BCL7C	2	1	C16orf58	2546	chr16:31519085:-	BCL7C	23032	chr16:30846469:-	ONLY_REF_SPLICE	YES	69	1	0.04	0.75	0.026	0.013	C16orf58->chr16:31500792-31520630:-,chromosome_16_open_reading_frame_58,BCL7C->B-cell_CLL/lymphoma_7C,chr16:30844947-30906281:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.75	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--ERBB4	2	0	IKZF2	10408	chr2:213914437:-	ERBB4	33117	chr2:212812341:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDST4--SKIV2L	2	0	NDST4	14064	chr4:115766979:-	SKIV2L	28983	chr6:31933560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	NDST4->N-deacetylase/N-sulfotransferase_4,chr4:115748919-116035032:-,SKIV2L->Ski2_like_RNA_helicase,chr6:31926857-31937532:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDCD1LG2--IGH@	2	0	PDCD1LG2	7089	chr9:5563211:+	IGH@	24986	chr14:107095433:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2,IGH@->Oncogene{Bushman}	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDCD1LG2--IGH@	2	0	PDCD1LG2	7089	chr9:5563211:+	IGH@	26567	chr14:107083557:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2,IGH@->Oncogene{Bushman}	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDCD1LG2--IGH@	2	0	PDCD1LG2	7089	chr9:5563211:+	IGH@	75300	chr14:106478411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2,IGH@->Oncogene{Bushman}	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0513--PAPLN	1	2	KIAA0513	4098	chr16:85101006:+	PAPLN	36915	chr14:73727417:+	ONLY_REF_SPLICE	YES	3	3	0.5	0.5	0.013	0.026	KIAA0513->KIAA0513,chr16:85061375-85127836:+,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.5	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000702
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	844	21	IGH@	94353	chr14:106330425:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	5	151	0.99	0.85	9.0232	0.2245	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.99	9.2477	TRUE	0	0	0	5	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	589	26	IGH@	94754	chr14:106330024:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	5	151	0.99	0.8	6.297	0.278	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.99	6.575	TRUE	0	0	0	6	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOTCH2--SRGAP2B	311	110	NOTCH2	1293	chr1:120611948:-	SRGAP2B	54124	chr1:144013901:+	ONLY_REF_SPLICE	YES	57	38	0.88	0.92	3.3249	1.176	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.92	4.5009	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WHSC1--IGH@	284	115	WHSC1	9027	chr4:1906105:+	IGH@	155043	chr14:106209407:-	INCL_NON_REF_SPLICE	YES	136	6	0.75	0.99	3.0362	1.2295	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,IGH@->Oncogene{Bushman}	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.99	4.2657	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	241	13	IGH@	93161	chr14:106331617:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	7	151	0.97	0.63	2.5765	0.139	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.97	2.7155	TRUE	0	0	0	5	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	179	80	IGH@	95370	chr14:106329408:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	5	151	0.98	0.63	1.9137	0.8553	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.98	2.769	TRUE	0	0	0	6	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	147	23	IGH@	94353	chr14:106330425:-	WHSC1	140829	chr4:1913818:+	ONLY_REF_SPLICE	YES	5	139	0.97	0.55	1.5716	0.2459	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.97	1.8175	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	U2AF2--ZNF524	134	67	U2AF2	10392	chr19:56181058:+	ZNF524	16758	chr19:56113441:+	ONLY_REF_SPLICE	YES	361	23	0.36	0.9	1.4326	0.7163	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:+:[51008],U2AF2->U2_small_nuclear_RNA_auxiliary_factor_2,chr19:56165512-56186081:+,ZNF524->chr19:56111388-56114504:+,zinc_finger_protein_524	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.9	2.1489	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	115	28	IGH@	94754	chr14:106330024:-	WHSC1	140829	chr4:1913818:+	ONLY_REF_SPLICE	YES	5	139	0.97	0.51	1.2295	0.2993	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.97	1.5288	TRUE	0	0	0	2	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TOM1L2--NECAB2	88	75	TOM1L2	7886	chr17:17782941:-	NECAB2	30339	chr16:84012049:+	ONLY_REF_SPLICE	YES	72	3	0.69	0.98	0.9408	0.8018	{Klijn_CCL:Lymphoid=1},TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,NECAB2->N-terminal_EF-hand_calcium_binding_protein_2,chr16:84002237-84036381:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.98	1.7426	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WHSC1--IGH@	92	0	WHSC1	9027	chr4:1906105:+	IGH@	163957	chr14:106111126:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9836	0	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,IGH@->Oncogene{Bushman}	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9836	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TOM1L2--NECAB2	66	83	TOM1L2	7886	chr17:17782941:-	NECAB2	29314	chr16:84005756:+	ONLY_REF_SPLICE	YES	72	2	0.67	0.99	0.7056	0.8873	{Klijn_CCL:Lymphoid=1},TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,NECAB2->N-terminal_EF-hand_calcium_binding_protein_2,chr16:84002237-84036381:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.99	1.5929	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-312O7.2--NOTCH2NL	67	35	RP11-312O7.2	2914	chr1:206135293:-	NOTCH2NL	9633	chr1:145248813:+	ONLY_REF_SPLICE	YES	0	369	1	0.22	0.7163	0.3742	RP11-312O7.2->chr1:206135293-206137984:-,NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	1.0905	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	25	83	IGH@	95370	chr14:106329408:-	WHSC1	140829	chr4:1913818:+	ONLY_REF_SPLICE	YES	5	139	0.96	0.44	0.2673	0.8873	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.96	1.1546	TRUE	0	0	0	2	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	41	13	IGH@	93161	chr14:106331617:-	WHSC1	140829	chr4:1913818:+	ONLY_REF_SPLICE	NO	7	139	0.89	0.28	0.4383	0.139	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.89	0.5773	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAI1--RP11-558A11.2	37	12	RAI1	5710	chr17:17627473:+	RP11-558A11.2	22111	chr16:84329430:-	ONLY_REF_SPLICE	YES	9	0	0.84	1	0.3956	0.1283	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,RP11-558A11.2->chr16:84329104-84330591:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	0.5239	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	34	7	IGH@	94353	chr14:106330425:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	5	685	0.89	0.06	0.3635	0.0748	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.89	0.4383	TRUE	0	0	0	3	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	29	9	IGH@	94754	chr14:106330024:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	5	685	0.88	0.05	0.31	0.0962	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.88	0.4062	TRUE	0	0	0	3	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPFIBP1--RP11-993B23.3	19	4	PPFIBP1	4200	chr12:27731172:+	RP11-993B23.3	41842	chr12:28111452:+	INCL_NON_REF_SPLICE	YES	53	0	0.3	1	0.2031	0.0428	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,RP11-993B23.3->chr12:28111450-28122746:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.2459	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	5	27	IGH@	95370	chr14:106329408:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	5	685	0.86	0.04	0.0535	0.2887	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.86	0.3422	TRUE	0	0	0	3	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	3	21	IGH@	94353	chr14:106330425:-	WHSC1	141931	chr4:1918596:+	INCL_NON_REF_SPLICE	YES	5	157	0.83	0.13	0.0321	0.2245	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.83	0.2566	TRUE	0	0	0	5	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--UBB	8	0	TXNDC5	5859	chr6:7899816:-	UBB	19351	chr17:16285276:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0855	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,UBB->chr17:16284112-16286059:+,ubiquitin_B	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0855	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CFDP1--DOK4	5	7	CFDP1	9207	chr16:75425278:-	DOK4	27740	chr16:57509869:-	ONLY_REF_SPLICE	YES	77	11	0.13	0.52	0.0535	0.0748	CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1,DOK4->chr16:57505863-57521239:-,docking_protein_4	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.52	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLSTN2--PRKCA	5	4	CLSTN2	2422	chr3:139894915:+	PRKCA	36624	chr17:64492319:+	ONLY_REF_SPLICE	YES	7	4	0.56	0.69	0.0535	0.0428	CLSTN2->calsyntenin_2,chr3:139654027-140296239:+,PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	0.69	0.0963	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZSCAN2--WDR73	6	0	ZSCAN2	3779	chr15:85147564:+	WDR73	21965	chr15:85186954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0	{Klijn_CCL:Lymphoid=1},LOCAL_INVERSION:+:-:[14972],ZSCAN2->chr15:85144217-85171027:+,zinc_finger_and_SCAN_domain_containing_2,WDR73->WD_repeat_domain_73,chr15:85185999-85197574:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACO2--IGKV1-5	5	0	ACO2	14752	chr22:41920972:+	IGKV1-5	21930	chr2:89247319:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0535	0	ACO2->aconitase_2,chr22:41865129-41924993:+,IGKV1-5->chr2:89246819-89247475:-,immunoglobulin_kappa_variable_1-5	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOTCH2--SRGAP2B	1	10	NOTCH2	1293	chr1:120611948:-	SRGAP2B	55317	chr1:144053506:+	ONLY_REF_SPLICE	NO	57	86	0.16	0.11	0.0107	0.1069	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.16	0.1176	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KHDRBS1--EIF4G3	3	1	KHDRBS1	12018	chr1:32510991:+	EIF4G3	22870	chr1:21415706:-	ONLY_REF_SPLICE	YES	0	6	1	0.4	0.0321	0.0107	KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.0428	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZADH2--TSHZ1	3	1	ZADH2	1499	chr18:72920805:-	TSHZ1	22211	chr18:72997403:+	ONLY_REF_SPLICE	YES	91	11	0.04	0.27	0.0321	0.0107	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Brain_-_Hypothalamus=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[1407],ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2,TSHZ1->chr18:72922710-73001905:+,teashirt_zinc_finger_homeobox_1	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.27	0.0428	TRUE	0	4	0	5	1	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CFDP1--DOK4	1	8	CFDP1	11744	chr16:75396773:-	DOK4	27740	chr16:57509869:-	ONLY_REF_SPLICE	YES	74	11	0.11	0.45	0.0107	0.0855	CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1,DOK4->chr16:57505863-57521239:-,docking_protein_4	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.45	0.0962	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IMMP2L--AC003088.1	2	1	IMMP2L	12890	chr7:110526649:-	AC003088.1	22075	chr7:110072963:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0214	0.0107	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0321	TRUE	0	1	0	2	1	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC026202.3--ITGB3BP	2	0	AC026202.3	1375	chr3:5228640:-	ITGB3BP	18179	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	AC026202.3->chr3:5198590-5229014:-,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADAM22--PEG10	2	0	ADAM22	4172	chr7:87607727:+	PEG10	47545	chr7:94292646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	ADAM22->ADAM_metallopeptidase_domain_22,chr7:87563458-87832204:+,PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHSY3--ZNF85	2	0	CHSY3	3444	chr5:129244053:+	ZNF85	20315	chr19:21131550:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,ZNF85->chr19:21106028-21133503:+,zinc_finger_protein_85	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--SRSF10	2	0	CPSF6	11046	chr12:69656342:+	SRSF10	30767	chr1:24294213:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF10->chr1:24291294-24307417:-,serine/arginine-rich_splicing_factor_10	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EMC2--SRSF1	2	0	EMC2	1098	chr8:109455927:+	SRSF1	21276	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLJ27365--RASA3	2	0	FLJ27365	1052	chr22:46449800:+	RASA3	21089	chr13:114806570:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	FLJ27365->chr22:46449749-46509808:+,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LIN52--RAPGEF2	2	0	LIN52	6088	chr14:74567941:+	RAPGEF2	52629	chr4:160279266:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LIN52->chr14:74551499-74667936:+,lin-52_DREAM_MuvB_core_complex_component,RAPGEF2->Rap_guanine_nucleotide_exchange_factor_2,chr4:160025330-160281321:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED14--PHF8	2	0	MED14	3989	chrX:40585998:-	PHF8	44517	chrX:54049276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	MED14->chrX:40507558-40595110:-,mediator_complex_subunit_14,PHF8->PHD_finger_protein_8,chrX:53963109-54075391:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRCAM--IGJ	2	0	NRCAM	2633	chr7:108039880:-	IGJ	46708	chr4:71532231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule,IGJ->chr4:71521258-71547534:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTBP3--TEX30	2	0	PTBP3	3994	chr9:115060121:-	TEX30	26626	chr13:103422436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,TEX30->chr13:103418340-103426161:-,testis_expressed_30	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF19A--MTX2	2	0	RNF19A	4601	chr8:101322095:-	MTX2	24895	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	RNF19A->chr8:101269288-101348446:-,ring_finger_protein_19A,_RBR_E3_ubiquitin_protein_ligase,MTX2->chr2:177134123-177202753:+,metaxin_2	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-304L19.5--SLC9A3R1	2	0	RP11-304L19.5	1216	chr16:2205144:-	SLC9A3R1	8717	chr17:72763075:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	RP11-304L19.5->chr16:2204798-2205359:-,SLC9A3R1->Oncogene{Bushman},SLC9A3_regulator_1,chr17:72744791-72765492:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFSWAP--FAM120AOS	2	0	SFSWAP	1367	chr12:132195992:+	FAM120AOS	32764	chr9:96212881:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SFSWAP->chr12:132195626-132284282:+,splicing_factor,_suppressor_of_white-apricot_homolog,FAM120AOS->chr9:96208776-96215874:-,family_with_sequence_similarity_120A_opposite_strand	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRPF--MLEC	2	0	SNRPF	1149	chr12:96252854:+	MLEC	14420	chr12:121131894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SNRPF->chr12:96252706-96297606:+,small_nuclear_ribonucleoprotein_polypeptide_F,MLEC->chr12:121124672-121139667:+,malectin	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUB1--SAR1B	2	0	SUB1	1284	chr5:32532022:+	SAR1B	26160	chr5:133959727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SUB1->SUB1_homolog,_transcriptional_regulator,chr5:32531739-32604185:+,SAR1B->chr5:133936834-133984961:-,secretion_associated_Ras_related_GTPase_1B	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF4--PSMD14	2	0	TCF4	42046	chr18:52921728:-	PSMD14	73971	chr2:162265348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TCF4->chr18:52889562-53332018:-,transcription_factor_4,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF4--TXNL1	2	0	TCF4	27453	chr18:52988901:-	TXNL1	62278	chr18:54293688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TCF4->chr18:52889562-53332018:-,transcription_factor_4,TXNL1->chr18:54264439-54318831:-,thioredoxin_like_1	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNRC6B--IGL@	2	0	TNRC6B	6221	chr22:40574144:+	IGL@	106833	chr22:23237555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TNRC6B->chr22:40440821-40731812:+,trinucleotide_repeat_containing_6B,IGL@->Oncogene{Bushman}	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--ZCCHC17	2	0	TXNDC5	6963	chr6:7895339:-	ZCCHC17	22527	chr1:31810022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,ZCCHC17->chr1:31769842-31837783:+,zinc_finger_CCHC-type_containing_17	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE3A--SNRPN	2	0	UBE3A	1493	chr15:25683636:-	SNRPN	29711	chr15:25207261:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1},UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A,SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	2	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VPS13A--CBWD1	2	0	VPS13A	1452	chr9:79792720:+	CBWD1	110558	chr9:135030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	VPS13A->chr9:79792269-80036457:+,vacuolar_protein_sorting_13_homolog_A,CBWD1->COBW_domain_containing_1,chr9:121041-188979:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL1RAP--CLDN1	1	1	IL1RAP	1169	chr3:190232008:+	CLDN1	34498	chr3:190030825:-	ONLY_REF_SPLICE	YES	18	1	0.1	0.67	0.0107	0.0107	IL1RAP->chr3:190231840-190375843:+,interleukin_1_receptor_accessory_protein,CLDN1->chr3:190023490-190040264:-,claudin_1	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.67	0.0214	TRUE	0	2	0	3	0	TRUE	ACH-000588
HCC15_LUNG	PXN--PLA2G1B	113	113	PXN	1155	chr12:120703420:-	PLA2G1B	24329	chr12:120763823:-	ONLY_REF_SPLICE	YES	106	0	0.68	1	1.2305	1.2305	{Klijn_CCL:Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[56340],PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,PLA2G1B->chr12:120759914-120765592:-,phospholipase_A2_group_IB	HCC15_LUNG	0.68	1	2.461	TRUE	0	2	0	2	2	TRUE	ACH-000878
HCC15_LUNG	RAB27A--CCPG1	87	86	RAB27A	14973	chr15:55516087:-	CCPG1	38945	chr15:55648607:-	ONLY_REF_SPLICE	YES	213	42	0.45	0.8	0.9474	0.9365	LOCAL_REARRANGEMENT:-:[20919],RAB27A->RAB27A,_member_RAS_oncogene_family,chr15:55495164-55611311:-,CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-	HCC15_LUNG	0.45	0.8	1.8839	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	FHOD3--ELP2	55	49	FHOD3	1287	chr18:33877963:+	ELP2	42006	chr18:33713201:+	ONLY_REF_SPLICE	YES	42	130	0.71	0.44	0.5989	0.5336	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,ELP2->chr18:33709407-33757909:+,elongator_acetyltransferase_complex_subunit_2	HCC15_LUNG	0.44	0.71	1.1325	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	DHX34--PTK2B	38	0	DHX34	1072	chr19:47852609:+	PTK2B	30532	chr8:27255065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4138	0	DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+,PTK2B->chr8:27168999-27316903:+,protein_tyrosine_kinase_2_beta	HCC15_LUNG	1	1	0.4138	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	PRKCE--TTC7A	22	28	PRKCE	2104	chr2:45879587:+	TTC7A	56095	chr2:47233061:+	ONLY_REF_SPLICE	YES	10	119	0.83	0.3	0.2396	0.3049	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A	HCC15_LUNG	0.3	0.83	0.5445	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	TMEM184B--DMC1	24	20	TMEM184B	7506	chr22:38626675:-	DMC1	28410	chr22:38934617:-	ONLY_REF_SPLICE	YES	115	30	0.28	0.59	0.2614	0.2178	TMEM184B->chr22:38615298-38669040:-,transmembrane_protein_184B,DMC1->DNA_meiotic_recombinase_1,chr22:38914954-38966291:-	HCC15_LUNG	0.28	0.59	0.4792	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	SNRNP35--SETD8	25	1	SNRNP35	1576	chr12:123942763:+	SETD8	16456	chr12:123875177:+	ONLY_REF_SPLICE	YES	6	39	0.81	0.4	0.2722	0.0109	LOCAL_REARRANGEMENT:+:[48283],SNRNP35->chr12:123942188-123957701:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_35,SETD8->chr12:123868320-123893905:+	HCC15_LUNG	0.4	0.81	0.2831	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	CCNT2--AC098823.3	14	20	CCNT2	2657	chr2:135677461:+	AC098823.3	21235	chr2:231561410:-	ONLY_REF_SPLICE	YES	130	0	0.21	1	0.1525	0.2178	CCNT2->chr2:135675805-135716912:+,cyclin_T2,AC098823.3->chr2:231555636-231565244:-	HCC15_LUNG	0.21	1	0.3703	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	CHMP2B--MAGI1	11	13	CHMP2B	2754	chr3:87289940:+	MAGI1	24731	chr3:65479306:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1198	0.1416	CHMP2B->charged_multivesicular_body_protein_2B,chr3:87276421-87304698:+,MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1	HCC15_LUNG	0.96	1	0.2614	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	IMMP2L--DOCK4	12	3	IMMP2L	1667	chr7:111201907:-	DOCK4	57580	chr7:111418425:-	ONLY_REF_SPLICE	YES	8	47	0.65	0.24	0.1307	0.0327	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	HCC15_LUNG	0.24	0.65	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	MAGI1--CHMP2B	9	8	MAGI1	8512	chr3:65607647:-	CHMP2B	51167	chr3:87294864:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.098	0.0871	MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1,CHMP2B->charged_multivesicular_body_protein_2B,chr3:87276421-87304698:+	HCC15_LUNG	0.94	1	0.1851	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	PRKCE--TTC7A	8	6	PRKCE	2104	chr2:45879587:+	TTC7A	57898	chr2:47238470:+	ONLY_REF_SPLICE	YES	10	143	0.58	0.09	0.0871	0.0653	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A	HCC15_LUNG	0.09	0.58	0.1524	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	PRKCE--TTC7A	1	29	PRKCE	10365	chr2:45928630:+	TTC7A	56095	chr2:47233061:+	ONLY_REF_SPLICE	YES	11	119	0.73	0.2	0.0109	0.3158	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A	HCC15_LUNG	0.2	0.73	0.3267	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	ASXL2--GPR113	5	4	ASXL2	1351	chr2:26101035:-	GPR113	40263	chr2:26535990:-	ONLY_REF_SPLICE	YES	33	20	0.21	0.31	0.0544	0.0436	ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,GPR113->chr2:26531041-26569685:-	HCC15_LUNG	0.21	0.31	0.098	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	FOXN3--RP11-242P2.2	5	1	FOXN3	13459	chr14:89747294:-	RP11-242P2.2	36411	chr14:80078173:-	ONLY_REF_SPLICE	YES	26	0	0.19	1	0.0544	0.0109	FOXN3->chr14:89591215-90085493:-,forkhead_box_N3,RP11-242P2.2->chr14:80077761-80099654:-	HCC15_LUNG	0.19	1	0.0653	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	IMMP2L--DOCK4	3	2	IMMP2L	1667	chr7:111201907:-	DOCK4	58674	chr7:111409733:-	ONLY_REF_SPLICE	YES	8	60	0.38	0.08	0.0327	0.0218	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	HCC15_LUNG	0.08	0.38	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	SNRNP35--SETD8	3	1	SNRNP35	1576	chr12:123942763:+	SETD8	15259	chr12:123873980:+	ONLY_REF_SPLICE	YES	6	9	0.4	0.31	0.0327	0.0109	LOCAL_REARRANGEMENT:+:[48283],SNRNP35->chr12:123942188-123957701:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_35,SETD8->chr12:123868320-123893905:+	HCC15_LUNG	0.31	0.4	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	ASXL2--GPR113	1	8	ASXL2	1351	chr2:26101035:-	GPR113	38762	chr2:26537491:-	ONLY_REF_SPLICE	YES	33	15	0.21	0.38	0.0109	0.0871	ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,GPR113->chr2:26531041-26569685:-	HCC15_LUNG	0.21	0.38	0.098	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	CCNT2--AC098823.3	2	4	CCNT2	2657	chr2:135677461:+	AC098823.3	22628	chr2:231559961:-	ONLY_REF_SPLICE	YES	130	18	0.04	0.25	0.0218	0.0436	CCNT2->chr2:135675805-135716912:+,cyclin_T2,AC098823.3->chr2:231555636-231565244:-	HCC15_LUNG	0.04	0.25	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	LEPROTL1--DDX42	3	0	LEPROTL1	4123	chr8:29962371:+	DDX42	25926	chr17:61882431:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LEPROTL1->chr8:29952914-30034724:+,leptin_receptor_overlapping_transcript-like_1,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	HCC15_LUNG	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	TXN--UBB	3	0	TXN	2260	chr9:113013712:-	UBB	9283	chr17:16285216:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	TXN->Oncogene{Bushman},chr9:113006091-113018920:-,thioredoxin,UBB->chr17:16284112-16286059:+,ubiquitin_B	HCC15_LUNG	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	USP34--XPO1	3	0	USP34	1120	chr2:61697785:-	XPO1	80582	chr2:61761038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	HCC15_LUNG	1	1	0.0327	TRUE	0	2	0	4	2	TRUE	ACH-000878
HCC15_LUNG	CHMP2B--MAGI1	1	7	CHMP2B	1286	chr3:87276706:+	MAGI1	24731	chr3:65479306:-	ONLY_REF_SPLICE	NO	1	1	0.89	0.89	0.0109	0.0762	CHMP2B->charged_multivesicular_body_protein_2B,chr3:87276421-87304698:+,MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1	HCC15_LUNG	0.89	0.89	0.0871	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	IMMP2L--DOCK4	2	3	IMMP2L	1667	chr7:111201907:-	DOCK4	32527	chr7:111555959:-	ONLY_REF_SPLICE	YES	8	54	0.38	0.08	0.0218	0.0327	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	HCC15_LUNG	0.08	0.38	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	ACACA--RHOT1	2	0	ACACA	1558	chr17:35766352:-	RHOT1	87423	chr17:30519220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	BOP1--EIF4G3	2	0	BOP1	2339	chr8:145512776:-	EIF4G3	60624	chr1:21139732:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	BTBD3--TASP1	2	0	BTBD3	1232	chr20:11871602:+	TASP1	29681	chr20:13463984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},BTBD3->BTB_domain_containing_3,chr20:11871371-11907257:+,TASP1->chr20:13246709-13619587:-,taspase_1	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	CDK5RAP1--NPEPPS	2	0	CDK5RAP1	1134	chr20:31989234:-	NPEPPS	49332	chr17:45697103:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	CDK5RAP1->CDK5_regulatory_subunit_associated_protein_1,chr20:31946645-31989367:-,NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	CRIM1--FEZ2	2	0	CRIM1	5875	chr2:36623930:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	HCC15_LUNG	1	1	0.0218	TRUE	0	1	0	2	0	TRUE	ACH-000878
HCC15_LUNG	CTC-260F20.3--ZFP30	2	0	CTC-260F20.3	1106	chr19:19627141:+	ZFP30	23587	chr19:38127206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	CTC-260F20.3->chr19:19627036-19646885:+,ZFP30->ZFP30_zinc_finger_protein,chr19:38104650-38183238:-	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	DDX39B--SP1	2	0	DDX39B	1499	chr6:31509727:-	SP1	16574	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	11	0	TRUE	ACH-000878
HCC15_LUNG	FAT1--CEP78	2	0	FAT1	6844	chr4:187627717:-	CEP78	46665	chr9:80856612:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-,CEP78->centrosomal_protein_78,chr9:80850978-80894606:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	HERC4--REXO2	2	0	HERC4	3466	chr10:69832640:-	REXO2	49581	chr11:114316701:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-,REXO2->RNA_exonuclease_2,chr11:114310108-114321001:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	NQO2--IGF2BP3	2	0	NQO2	9651	chr6:3006793:+	IGF2BP3	42958	chr7:23353272:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+,IGF2BP3->chr7:23349828-23510086:-,insulin_like_growth_factor_2_mRNA_binding_protein_3	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	PBX1--GNAS	2	0	PBX1	4894	chr1:164532548:+	GNAS	66713	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	PSMA3--ACTR10	2	0	PSMA3	2731	chr14:58714550:+	ACTR10	27735	chr14:58697117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[9799],PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,ACTR10->actin-related_protein_10_homolog,chr14:58666798-58701750:+	HCC15_LUNG	1	1	0.0218	TRUE	0	1	0	2	1	TRUE	ACH-000878
HCC15_LUNG	RNF207--PABPC1	2	0	RNF207	8709	chr1:6273243:+	PABPC1	18532	chr8:101730116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	RNF207->chr1:6265535-6281359:+,ring_finger_protein_207,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	ROR1--YPEL5	2	0	ROR1	5491	chr1:64516388:+	YPEL5	23739	chr2:30379494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ROR1->chr1:64239693-64647181:+,receptor_tyrosine_kinase-like_orphan_receptor_1,YPEL5->chr2:30369807-30383399:+,yippee_like_5	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	RPL4--UBFD1	2	0	RPL4	5255	chr15:66795696:-	UBFD1	19461	chr16:23575360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4,UBFD1->chr16:23568392-23585710:+,ubiquitin_family_domain_containing_1	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	SMAD3--GLE1	2	0	SMAD3	2698	chr15:67358698:+	GLE1	28588	chr9:131271155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	SMAD3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_3,chr15:67356101-67487533:+,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	STAG2--EIF4EBP2	2	0	STAG2	1655	chrX:123094716:+	EIF4EBP2	47569	chr10:72179670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,EIF4EBP2->chr10:72164135-72188374:+,eukaryotic_translation_initiation_factor_4E_binding_protein_2	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	TMSB10--CDC14B	2	0	TMSB10	1094	chr2:85132842:+	CDC14B	8900	chr9:99327765:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,CDC14B->cell_division_cycle_14B,chr9:99252523-99382112:-	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	TRAPPC11--VIM	2	0	TRAPPC11	16959	chr4:184614300:+	VIM	32623	chr10:17272649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	TRAPPC11->chr4:184580420-184634745:+,trafficking_protein_particle_complex_11,VIM->chr10:17270258-17279592:+,vimentin	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	VPS29--GAPVD1	2	0	VPS29	1069	chr12:110939854:-	GAPVD1	24998	chr9:128074731:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	VPS29->VPS29_retromer_complex_component,chr12:110928902-110939922:-,GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	ZC3H14--CCT6A	2	0	ZC3H14	10094	chr14:89044484:+	CCT6A	29414	chr7:56123317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	ZC3H18--CPSF7	2	0	ZC3H18	20370	chr16:88697747:+	CPSF7	24739	chr11:61196762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ZC3H18->chr16:88636789-88698374:+,zinc_finger_CCCH-type_containing_18,CPSF7->chr11:61170121-61197503:-,cleavage_and_polyadenylation_specific_factor_7	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPAG9--P4HB	229	94	SPAG9	2633	chr17:49156945:-	P4HB	47818	chr17:79817263:-	ONLY_REF_SPLICE	YES	293	3253	0.52	0.09	2.2418	0.9202	SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.52	3.162	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCP11L1--QSER1	40	17	TCP11L1	13636	chr11:33094199:+	QSER1	30266	chr11:32975403:+	ONLY_REF_SPLICE	YES	48	70	0.54	0.45	0.3916	0.1664	LOCAL_REARRANGEMENT:+:[46101],TCP11L1->chr11:33060963-33127489:+,t-complex_11_like_1,QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.54	0.558	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR70--NUP155	21	18	WDR70	2427	chr5:37381787:+	NUP155	37889	chr5:37338020:-	ONLY_REF_SPLICE	YES	228	137	0.15	0.22	0.2056	0.1762	LOCAL_INVERSION:+:-:[8031],WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+,NUP155->chr5:37288239-37371283:-,nucleoporin_155kDa	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.22	0.3818	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM38B--UNC13B	18	13	TMEM38B	8365	chr9:108510471:+	UNC13B	28908	chr9:35366944:+	ONLY_REF_SPLICE	YES	101	50	0.23	0.38	0.1762	0.1273	TMEM38B->chr9:108456825-108538893:+,transmembrane_protein_38B,UNC13B->chr9:35161999-35405335:+,unc-13_homolog_B_(C._elegans)	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.38	0.3035	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOK1--ALMS1P	16	4	DOK1	1147	chr2:74776299:+	ALMS1P	14972	chr2:73912088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1566	0.0392	DOK1->chr2:74776153-74784681:+,docking_protein_1,ALMS1P->chr2:73872046-73912703:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1958	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENTPD1-AS1--ZNF518A	12	8	ENTPD1-AS1	1973	chr10:97849023:-	ZNF518A	39069	chr10:97915681:+	ONLY_REF_SPLICE	YES	2	6	0.91	0.77	0.1175	0.0783	LOCAL_INVERSION:-:+:[39477],ENTPD1-AS1->ENTPD1_antisense_RNA_1,chr10:97512963-97849995:-,ZNF518A->chr10:97889472-97965044:+,zinc_finger_protein_518A	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.91	0.1958	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCP11L1--QSER1	4	18	TCP11L1	15656	chr11:33102770:+	QSER1	30266	chr11:32975403:+	ONLY_REF_SPLICE	YES	1	70	0.96	0.24	0.0392	0.1762	LOCAL_REARRANGEMENT:+:[46101],TCP11L1->chr11:33060963-33127489:+,t-complex_11_like_1,QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.96	0.2154	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENTPD1-AS1--ZNF518A	5	3	ENTPD1-AS1	1973	chr10:97849023:-	ZNF518A	48252	chr10:97963676:+	ONLY_REF_SPLICE	YES	2	3	0.8	0.73	0.0489	0.0294	LOCAL_INVERSION:-:+:[39477],ENTPD1-AS1->ENTPD1_antisense_RNA_1,chr10:97512963-97849995:-,ZNF518A->chr10:97889472-97965044:+,zinc_finger_protein_518A	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.8	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JUN--MT2A	5	0	JUN	2308	chr1:59248478:-	MT2A	7705	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	JUN->ArcherDX_panel,FoundationOne_panel,Jun_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr1:59246465-59249785:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0489	TRUE	0	0	0	6	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STK3--RP11-410L14.2	4	0	STK3	14445	chr8:99761504:-	RP11-410L14.2	40104	chr8:100009194:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	LOCAL_REARRANGEMENT:-:[53936],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,RP11-410L14.2->chr8:100008991-100025272:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCKAP5--TMEM163	3	2	NCKAP5	5640	chr2:134060609:-	TMEM163	36643	chr2:135309662:-	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.0294	0.0196	NCKAP5->NCK_associated_protein_5,chr2:133429374-134326034:-,TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.049	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NF1--TET1	3	2	NF1	39979	chr17:29592357:+	TET1	78702	chr10:70331974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0.0196	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,TET1->Oncogene{Bushman},chr10:70320413-70454239:+,tet_methylcytosine_dioxygenase_1	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.049	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NEO1--ADPGK	2	1	NEO1	9310	chr15:73470768:+	ADPGK	39484	chr15:73078187:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0196	0.0098	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},NEO1->chr15:73344051-73597547:+,neogenin_1,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM2--TTC7A	2	0	CALM2	1161	chr2:47403580:-	TTC7A	28805	chr2:47233061:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	GTEx_v2:{count=2;pct=0.02%;dist=Heart_-_Atrial_Appendage=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[83945],CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	TRUE	0	0	0	2	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30007	chr8:144669019:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	TRUE	1	10	0	18	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP6-99M1.2--EIF4A2	2	0	RP6-99M1.2	1489	chrX:45629189:-	EIF4A2	12891	chr3:186506099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	RP6-99M1.2->chrX:45604639-45629677:-,EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THSD4--ATP1B3	2	0	THSD4	7149	chr15:71549054:+	ATP1B3	48009	chr3:141644373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,ATP1B3->ATPase_Na+/K+_transporting_subunit_beta_3,chr3:141594966-141645356:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	U2AF1--PKNOX1	2	0	U2AF1	1137	chr21:44527561:-	PKNOX1	18796	chr21:44424436:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[59375],U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-,PKNOX1->Oncogene{Bushman},PBX/knotted_1_homeobox_1,chr21:44394620-44453691:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	TRUE	0	1	0	3	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VMP1--CLTC	2	0	VMP1	1557	chr17:57785109:+	CLTC	24482	chr17:57721637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	{Klijn_CCL:Lung=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[10882],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	TRUE	0	0	0	3	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C7orf60--AC018464.3	1	2	C7orf60	5088	chr7:112535624:-	AC018464.3	18799	chr7:112613727:-	ONLY_REF_SPLICE	YES	65	12	0.04	0.2	0.0098	0.0196	LOCAL_REARRANGEMENT:-:[14730],C7orf60->chr7:112459202-112579971:-,AC018464.3->chr7:112594701-112635689:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.2	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C7orf60--AC018464.3	1	2	C7orf60	5088	chr7:112535624:-	AC018464.3	19867	chr7:112596757:-	ONLY_REF_SPLICE	YES	65	13	0.04	0.19	0.0098	0.0196	LOCAL_REARRANGEMENT:-:[14730],C7orf60->chr7:112459202-112579971:-,AC018464.3->chr7:112594701-112635689:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.19	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000190
SALE_LUNG	PRSS8--GDF15	4	0	PRSS8	4614	chr16:31143470:-	GDF15	11121	chr19:18496968:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	PRSS8->ArcherDX_panel,FoundationOne_panel,chr16:31142756-31147083:-,protease,_serine_8,GDF15->Oncogene{Bushman},chr19:18485541-18499986:+,growth_differentiation_factor_15	SALE_LUNG	1	1	0.0547	TRUE	0	0	0	1	0	TRUE	ACH-000064
SALE_LUNG	AC005307.3--AC005616.1	3	0	AC005307.3	5855	chr19:29212861:-	AC005616.1	22332	chr19:28983930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.041	0	AC005307.3->chr19:28926295-29218684:-,AC005616.1->chr19:28982771-29123635:-	SALE_LUNG	1	1	0.041	TRUE	0	2	0	3	2	TRUE	ACH-000064
SALE_LUNG	IGFBP7--KRT17	3	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	SALE_LUNG	1	1	0.041	TRUE	0	0	0	9	0	TRUE	ACH-000064
SALE_LUNG	LTBP4--NEAT1	3	0	LTBP4	14015	chr19:41116563:+	NEAT1	31894	chr11:65190766:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	LTBP4->chr19:41098789-41135725:+,latent_transforming_growth_factor_beta_binding_protein_4,NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding)	SALE_LUNG	1	1	0.041	TRUE	0	0	0	1	0	TRUE	ACH-000064
SALE_LUNG	PRSS8--GDF15	3	0	PRSS8	4634	chr16:31143450:-	GDF15	11143	chr19:18496990:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	PRSS8->ArcherDX_panel,FoundationOne_panel,chr16:31142756-31147083:-,protease,_serine_8,GDF15->Oncogene{Bushman},chr19:18485541-18499986:+,growth_differentiation_factor_15	SALE_LUNG	1	1	0.041	TRUE	0	0	0	1	0	TRUE	ACH-000064
SALE_LUNG	AP1G2--FN3KRP	2	0	AP1G2	9133	chr14:24029147:-	FN3KRP	18898	chr17:80684925:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	AP1G2->adaptor_related_protein_complex_1_gamma_2_subunit,chr14:24028774-24037279:-,FN3KRP->chr17:80674559-80688204:+,fructosamine_3_kinase_related_protein	SALE_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000064
SALE_LUNG	CHTF8--BDNF-AS	2	0	CHTF8	2554	chr16:69155339:-	BDNF-AS	18013	chr11:27696844:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	CHTF8->chr16:69151913-69166487:-,chr16:69152757-69154331:-,chromosome_transmission_fidelity_factor_8,BDNF-AS->BDNF_antisense_RNA,chr11:27528385-27719721:+	SALE_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000064
SALE_LUNG	FKBP10--HSPA9	2	0	FKBP10	4070	chr17:39974779:+	HSPA9	16907	chr5:137903411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	SALE_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000064
CORL47_LUNG	RLF--MYCL	3744	1145	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	2	495	1	0.91	38.2174	11.6878	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	CORL47_LUNG	0.91	1	49.9052	TRUE	0	0	0	10	0	TRUE	ACH-000695
CORL47_LUNG	RLF--MYCL	1491	1639	RLF	1264	chr1:40627308:+	MYCL	18060	chr1:40367115:-	ONLY_REF_SPLICE	YES	2	9	1	1	15.2196	16.7303	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	CORL47_LUNG	1	1	31.9499	TRUE	0	0	0	6	0	TRUE	ACH-000695
CORL47_LUNG	RLF--MYCL	12	1130	RLF	1264	chr1:40627308:+	MYCL	20894	chr1:40363640:-	INCL_NON_REF_SPLICE	YES	2	490	1	0.7	0.1225	11.5346	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	CORL47_LUNG	0.7	1	11.6571	TRUE	0	0	0	10	0	TRUE	ACH-000695
CORL47_LUNG	FAF1--AGBL4	68	11	FAF1	1497	chr1:51425439:-	AGBL4	34989	chr1:49711536:-	ONLY_REF_SPLICE	YES	15	4	0.84	0.95	0.6941	0.1123	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	CORL47_LUNG	0.84	0.95	0.8064	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	PNO1--RP11-215P8.4	46	10	PNO1	4135	chr2:68389795:+	RP11-215P8.4	11976	chr5:133765642:-	ONLY_REF_SPLICE	YES	23	0	0.71	1	0.4696	0.1021	PNO1->chr2:68384976-68403370:+,partner_of_NOB1_homolog,RP11-215P8.4->chr5:133764742-133796306:-	CORL47_LUNG	0.71	1	0.5717	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	RPS6KA5--IRS1	37	7	RPS6KA5	18192	chr14:91356831:-	IRS1	33404	chr2:227600966:-	ONLY_REF_SPLICE	YES	15	2	0.75	0.96	0.3777	0.0715	RPS6KA5->chr14:91336799-91526980:-,ribosomal_protein_S6_kinase_A5,IRS1->chr2:227596033-227664475:-,insulin_receptor_substrate_1	CORL47_LUNG	0.75	0.96	0.4492	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	AMN1--DDX11L2	16	1	AMN1	1204	chr12:31881905:-	DDX11L2	16031	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	1	1	0.94	0.94	0.1633	0.0102	AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	CORL47_LUNG	0.94	0.94	0.1735	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	PPP3R1--PHF15	15	4	PPP3R1	4763	chr2:68444224:-	PHF15	17162	chr5:133871548:+	ONLY_REF_SPLICE	YES	12	1	0.61	0.95	0.1531	0.0408	PPP3R1->chr2:68405989-68483369:-,protein_phosphatase_3_regulatory_subunit_B,_alpha,PHF15->chr5:133860003-133918918:+	CORL47_LUNG	0.61	0.95	0.1939	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	PPP3R1--AC005355.1	10	2	PPP3R1	4763	chr2:68444224:-	AC005355.1	15265	chr5:133827820:+	ONLY_REF_SPLICE	YES	12	0	0.5	1	0.1021	0.0204	PPP3R1->chr2:68405989-68483369:-,protein_phosphatase_3_regulatory_subunit_B,_alpha,AC005355.1->chr5:133772402-133828210:+	CORL47_LUNG	0.5	1	0.1225	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	AMN1--DDX11L2	9	0	AMN1	1184	chr12:31881925:-	DDX11L2	16031	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0	AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	CORL47_LUNG	1	1	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CAP1--PPT1	5	0	CAP1	1551	chr1:40506455:+	PPT1	20129	chr1:40558179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.051	0	LOCAL_INVERSION:+:-:[58],CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1	CORL47_LUNG	1	1	0.051	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	FAF1--AGBL4	1	11	FAF1	1497	chr1:51425439:-	AGBL4	31364	chr1:50317190:-	ONLY_REF_SPLICE	NO	15	1	0.44	0.92	0.0102	0.1123	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	CORL47_LUNG	0.44	0.92	0.1225	TRUE	0	0	0	2	0	TRUE	ACH-000695
CORL47_LUNG	CAP1--PPT1	3	0	CAP1	1569	chr1:40506473:+	PPT1	24619	chr1:40546159:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	LOCAL_INVERSION:+:-:[58],CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1	CORL47_LUNG	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	DNAJC24--IMMP1L	3	0	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	CORL47_LUNG	1	1	0.0306	TRUE	0	4	0	9	1	TRUE	ACH-000695
CORL47_LUNG	NEDD8--MARCKSL1	3	0	NEDD8	7589	chr14:24686255:-	MARCKSL1	13039	chr1:32799728:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	NEDD8->chr14:24686058-24701660:-,neural_precursor_cell_expressed,_developmentally_down-regulated_8,MARCKSL1->MARCKS-like_1,chr1:32799433-32801980:-	CORL47_LUNG	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	SREBF2--AHSA1	3	0	SREBF2	1254	chr22:42229362:+	AHSA1	34340	chr14:77930941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,AHSA1->activator_of_Hsp90_ATPase_activity_1,chr14:77924213-77935817:+	CORL47_LUNG	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	TENM3--ELF2	3	0	TENM3	4123	chr4:183245405:+	ELF2	56126	chr4:139994721:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	TENM3->chr4:183065140-183724177:+,teneurin_transmembrane_protein_3,ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-	CORL47_LUNG	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	AC074117.10--WARS	2	0	AC074117.10	2657	chr2:27580769:+	WARS	23809	chr14:100809724:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	AC074117.10->chr2:27579113-27590489:+,WARS->chr14:100800125-100843142:-,tryptophanyl-tRNA_synthetase	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ATP2C1--MRPL3	2	0	ATP2C1	5569	chr3:130613619:+	MRPL3	48804	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ATXN2--NDUFAF5	2	0	ATXN2	21230	chr12:111923075:-	NDUFAF5	41484	chr20:13775484:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ATXN2->ataxin_2,chr12:111890018-112037480:-,NDUFAF5->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_5,chr20:13765596-13799067:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	C14orf37--CDC5L	2	0	C14orf37	2258	chr14:58758353:-	CDC5L	26075	chr6:44364078:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,CDC5L->cell_division_cycle_5_like,chr6:44355262-44418163:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CALM2--NRXN1	2	0	CALM2	1161	chr2:47403580:-	NRXN1	53766	chr2:50318632:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,NRXN1->chr2:50145643-51259674:-,neurexin_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CALM3--FAM83D	2	0	CALM3	6082	chr19:47111584:+	FAM83D	13163	chr20:37570602:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,FAM83D->chr20:37554955-37581703:+,family_with_sequence_similarity_83_member_D	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CAP1--PPT1	2	0	CAP1	2261	chr1:40507165:+	PPT1	22378	chr1:40555184:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_INVERSION:+:-:[58],CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CHN2--PHF14	2	0	CHN2	7426	chr7:29186576:+	PHF14	45399	chr7:11021999:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CHN2->chimerin_2,chr7:29161890-29553944:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CLTC--APPBP2	2	0	CLTC	1316	chr17:57697534:+	APPBP2	54438	chr17:58531853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CLYBL--PCCA	2	0	CLYBL	3469	chr13:100511303:+	PCCA	51656	chr13:101179929:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CTD-2006C1.2--SLC3A2	2	0	CTD-2006C1.2	3469	chr19:12112637:+	SLC3A2	25695	chr11:62650380:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CTD-2006C1.2->chr19:12098432-12157090:+,SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	DDX50--MARCH6	2	0	DDX50	1194	chr10:70661227:+	MARCH6	39482	chr5:10414545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	DDX50->DEAD-box_helicase_50,chr10:70661034-70706603:+,MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	EEF2K--CCP110	2	0	EEF2K	1398	chr16:22218000:+	CCP110	39874	chr16:19559277:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase,CCP110->centriolar_coiled-coil_protein_110kDa,chr16:19535133-19564730:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ERBB4--METTL21A	2	0	ERBB4	25807	chr2:212426628:-	METTL21A	52058	chr2:208478167:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,METTL21A->Oncogene{Bushman},chr2:208445355-208490652:-,methyltransferase_like_21A	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	FAXC--PRIM2	2	0	FAXC	4289	chr6:99781227:-	PRIM2	35865	chr6:57393112:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	FAXC->chr6:99719045-99797938:-,failed_axon_connections_homolog,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	FKBP1A--MYH10	2	0	FKBP1A	1329	chr20:1373478:-	MYH10	29371	chr17:8424603:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	FMN2--ALG11	2	0	FMN2	6146	chr1:240286645:+	ALG11	36090	chr13:52593049:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	FMN2->chr1:240177648-240638489:+,formin_2,ALG11->ALG11,_alpha-1,2-mannosyltransferase,chr13:52586534-52603800:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	GFOD1--BRAF	2	0	GFOD1	2025	chr6:13486870:-	BRAF	20340	chr7:140550012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GFOD1->chr6:13358062-13487894:-,glucose-fructose_oxidoreductase_domain_containing_1,BRAF->ArcherDX_panel,B-Raf_proto-oncogene,_serine/threonine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:140419127-140624564:-	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	GTF2F2--MIPEPP3	2	0	GTF2F2	4445	chr13:45725966:+	MIPEPP3	17114	chr13:21875558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2,MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	HNRNPL--HMGXB4	2	0	HNRNPL	7921	chr19:39334482:-	HMGXB4	20940	chr22:35658316:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	HNRNPL->chr19:39327028-39342987:-,heterogeneous_nuclear_ribonucleoprotein_L,HMGXB4->HMG-box_containing_4,chr22:35653445-35691800:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	IARS--RP11-1084J3.4	2	0	IARS	1146	chr9:95055893:-	RP11-1084J3.4	38140	chr5:34124633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,RP11-1084J3.4->chr5:33987279-34124633:-	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	JTB--SNAPIN	2	0	JTB	2863	chr1:153948302:-	SNAPIN	7905	chr1:153631614:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	{Klijn_CCL:Uterus=1,Ovary=1},JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	3	0	TRUE	ACH-000695
CORL47_LUNG	KIAA0319--HIRA	2	0	KIAA0319	16152	chr6:24569009:-	HIRA	58160	chr22:19319079:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	KIAA0319->KIAA0319,chr6:24544332-24646383:-,HIRA->chr22:19318221-19435224:-,histone_cell_cycle_regulator	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	KIF2A--CFL1	2	0	KIF2A	1375	chr5:61602363:+	CFL1	36955	chr11:65623713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	KIF2A->chr5:61601989-61833076:+,kinesin_heavy_chain_member_2A,CFL1->chr11:65590493-65629497:-,cofilin_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	MIPEPP3--CTDSPL2	2	0	MIPEPP3	2501	chr13:21875757:+	CTDSPL2	20752	chr15:44806796:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	MKL2--PTPN12	2	0	MKL2	4491	chr16:14234617:+	PTPN12	52248	chr7:77227159:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MKL2->MKL1/myocardin_like_2,chr16:14165178-14360630:+,PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	NDUFA6-AS1--SREBF2	2	0	NDUFA6-AS1	1670	chr22:42487604:+	SREBF2	21606	chr22:42262835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NDUFA6-AS1->NDUFA6_antisense_RNA_1_(head_to_head),chr22:42486935-42535286:+,SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	PHF21B--FTO	2	0	PHF21B	2455	chr22:45404426:-	FTO	37490	chr16:53922744:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	PHF21B->PHD_finger_protein_21B,chr22:45277042-45405880:-,FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	PPT1--CAP1	2	0	PPT1	1589	chr1:40562787:-	CAP1	19700	chr1:40525006:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[58],PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1,CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	RP11-120D5.1--HSPBAP1	2	0	RP11-120D5.1	4510	chrX:11074056:-	HSPBAP1	27271	chr3:122459960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RP11-120D5.1->chrX:10865996-11129261:-,HSPBAP1->HSPB1_associated_protein_1,Oncogene{Bushman},chr3:122458846-122512671:-	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	RP11-1379J22.5--ENOPH1	2	0	RP11-1379J22.5	1720	chr5:179085482:+	ENOPH1	8312	chr4:83369073:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RP11-1379J22.5->chr5:179084763-179091433:+,ENOPH1->chr4:83351715-83382244:+,enolase-phosphatase_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	CORL47_LUNG	1	1	0.0204	TRUE	0	1	0	17	0	TRUE	ACH-000695
CORL47_LUNG	SIVA1--DYNC1H1	2	0	SIVA1	1220	chr14:105219656:+	DYNC1H1	15033	chr14:102445656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SIVA1->SIVA1_apoptosis_inducing_factor,chr14:105219437-105234831:+,DYNC1H1->chr14:102430865-102517129:+,dynein_cytoplasmic_1_heavy_chain_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	SMYD3--TTC13	2	0	SMYD3	13047	chr1:246350045:-	TTC13	34642	chr1:231097049:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,TTC13->chr1:231041989-231114621:-,tetratricopeptide_repeat_domain_13	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	SNRPN--SYT1	2	0	SNRPN	11083	chr15:25213229:+	SYT1	28163	chr12:79389539:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N,SYT1->chr12:79257773-79845788:+,synaptotagmin_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	SPIN1--TUG1	2	0	SPIN1	1120	chr9:91003453:+	TUG1	19869	chr22:31368841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SPIN1->chr9:91003334-91093609:+,spindlin_1,TUG1->chr22:31366663-31375381:+,taurine_up-regulated_1_(non-protein_coding)	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	TMX1--GPHN	2	0	TMX1	6512	chr14:51716483:+	GPHN	30739	chr14:67490350:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	TMX1->chr14:51706880-51722759:+,thioredoxin_related_transmembrane_protein_1,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	TNFAIP8--MYCL	2	0	TNFAIP8	1216	chr5:118604602:+	MYCL	22237	chr1:40363642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	TPPP--TERT	2	0	TPPP	2433	chr5:677865:-	TERT	20989	chr5:1268748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	WBP2--NDUFS1	2	0	WBP2	3549	chr17:73848737:-	NDUFS1	14567	chr2:207018406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	WBP2->WW_domain_binding_protein_2,chr17:73841780-73852588:-,NDUFS1->NADH:ubiquinone_oxidoreductase_core_subunit_S1,chr2:206979541-207024327:-	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	XRRA1--DPYSL3	2	0	XRRA1	1273	chr11:74659973:-	DPYSL3	43080	chr5:146785293:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ZC3H7B--MKL1	2	0	ZC3H7B	14403	chr22:41736141:+	MKL1	48301	chr22:40807911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ZFYVE28--BRF1	2	0	ZFYVE28	5035	chr4:2355660:-	BRF1	61074	chr14:105688251:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZFYVE28->chr4:2271309-2420390:-,zinc_finger_FYVE-type_containing_28,BRF1->BRF1,_RNA_polymerase_III_transcription_initiation_factor_90_kDa_subunit,chr14:105675623-105781926:-	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ZNF608--CCDC14	2	0	ZNF608	6075	chr5:124036707:-	CCDC14	30180	chr3:123667979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ZNRF3--HSCB	2	0	ZNRF3	3718	chr22:29383189:+	HSCB	25276	chr22:29153066:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,HSCB->HscB_mitochondrial_iron-sulfur_cluster_co-chaperone,chr22:29138019-29153503:+	CORL47_LUNG	1	1	0.0204	TRUE	0	1	0	1	1	TRUE	ACH-000695
SKHEP1_LIVER	RSPRY1--SPG7	28	16	RSPRY1	1315	chr16:57220363:+	SPG7	33453	chr16:89590414:+	ONLY_REF_SPLICE	YES	33	83	0.57	0.35	0.3336	0.1907	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	0.35	0.57	0.5243	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	RSPRY1--SPG7	18	23	RSPRY1	1649	chr16:57220697:+	SPG7	33453	chr16:89590414:+	ONLY_REF_SPLICE	YES	78	83	0.34	0.33	0.2145	0.2741	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	0.33	0.34	0.4886	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	ARID4A--PSMA3	18	14	ARID4A	6968	chr14:58772830:+	PSMA3	38775	chr14:58730423:+	ONLY_REF_SPLICE	YES	8	508	0.8	0.06	0.2145	0.1668	LOCAL_REARRANGEMENT:+:[26373],ARID4A->AT-rich_interaction_domain_4A,Oncogene{Bushman},chr14:58765103-58840605:+,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	SKHEP1_LIVER	0.06	0.8	0.3813	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	RSPRY1--SPG7	13	18	RSPRY1	1315	chr16:57220363:+	SPG7	33210	chr16:89590171:+	INCL_NON_REF_SPLICE	YES	33	78	0.48	0.28	0.1549	0.2145	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	0.28	0.48	0.3694	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	RSPRY1--SPG7	8	23	RSPRY1	1914	chr16:57220962:+	SPG7	33453	chr16:89590414:+	ONLY_REF_SPLICE	YES	71	83	0.3	0.27	0.0953	0.2741	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	0.27	0.3	0.3694	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	RSPRY1--SPG7	6	27	RSPRY1	1649	chr16:57220697:+	SPG7	33210	chr16:89590171:+	INCL_NON_REF_SPLICE	YES	78	78	0.3	0.3	0.0715	0.3217	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	0.3	0.3	0.3932	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	FAM192A--GPR114	11	6	FAM192A	10833	chr16:57197913:-	GPR114	19664	chr16:57597003:+	ONLY_REF_SPLICE	YES	200	0	0.08	1	0.1311	0.0715	FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A,GPR114->chr16:57576333-57625593:+	SKHEP1_LIVER	0.08	1	0.2026	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	VIM--PPIA	6	0	VIM	2122	chr10:17271379:+	PPIA	12215	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	VIM->chr10:17270258-17279592:+,vimentin,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	SKHEP1_LIVER	1	1	0.0715	TRUE	0	0	0	6	0	TRUE	ACH-000361
SKHEP1_LIVER	RSPRY1--SPG7	4	1	RSPRY1	1293	chr16:57220341:+	SPG7	33453	chr16:89590414:+	ONLY_REF_SPLICE	YES	3	83	0.62	0.06	0.0477	0.0119	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	0.06	0.62	0.0596	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	ADIPOR2--WNT5B	2	0	ADIPOR2	2331	chr12:1800379:+	WNT5B	26960	chr12:1740464:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	LOCAL_REARRANGEMENT:+:[41331],ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+	SKHEP1_LIVER	1	1	0.0238	TRUE	0	1	0	2	1	TRUE	ACH-000361
SKHEP1_LIVER	APP--BTG3	2	0	APP	20667	chr21:27326904:-	BTG3	34467	chr21:18981470:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,BTG3->BTG_family_member_3,chr21:18965971-18985265:-	SKHEP1_LIVER	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	F3--SPG7	2	0	F3	1264	chr1:95007093:-	SPG7	29909	chr16:89611056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Head-Neck=2,Breast=1},F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	1	1	0.0238	TRUE	0	0	0	8	0	TRUE	ACH-000361
SKHEP1_LIVER	LPP--RPL39L	2	0	LPP	1080	chr3:187871151:+	RPL39L	57575	chr3:186845850:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Artery_-_Coronary=1},LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,RPL39L->chr3:186838736-186898696:-,ribosomal_protein_L39_like	SKHEP1_LIVER	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	RSPRY1--PIEZO1	1	3	RSPRY1	1306	chr16:57220354:+	PIEZO1	24716	chr16:88815887:-	ONLY_REF_SPLICE	NO	15	13	0.21	0.24	0.0119	0.0357	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1	SKHEP1_LIVER	0.21	0.24	0.0476	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	RSPRY1--PIEZO1	1	3	RSPRY1	1649	chr16:57220697:+	PIEZO1	24716	chr16:88815887:-	ONLY_REF_SPLICE	NO	78	13	0.05	0.24	0.0119	0.0357	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1	SKHEP1_LIVER	0.05	0.24	0.0476	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	RSPRY1--PIEZO1	1	3	RSPRY1	1315	chr16:57220363:+	PIEZO1	24716	chr16:88815887:-	ONLY_REF_SPLICE	NO	33	13	0.11	0.24	0.0119	0.0357	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1	SKHEP1_LIVER	0.11	0.24	0.0476	TRUE	0	0	0	1	0	TRUE	ACH-000361
SAOS2_BONE	LHFP--LINC00462	51	13	LHFP	3205	chr13:40174969:-	LINC00462	9697	chr13:49151995:-	ONLY_REF_SPLICE	YES	95	0	0.4	1	0.5052	0.1288	LHFP->Oncogene{Bushman},chr13:39917029-40177665:-,lipoma_HMGIC_fusion_partner,LINC00462->chr13:49151110-49152224:-,long_intergenic_non-protein_coding_RNA_462	SAOS2_BONE	0.4	1	0.634	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	DIP2C--MLTK	43	33	DIP2C	1250	chr10:735434:-	MLTK	52423	chr2:173955726:+	ONLY_REF_SPLICE	YES	16	69	0.83	0.52	0.4259	0.3269	DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,MLTK->chr2:173940163-174132738:+	SAOS2_BONE	0.52	0.83	0.7528	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	OXR1--ANGPT1	42	23	OXR1	9883	chr8:107670413:+	ANGPT1	36681	chr8:108359325:-	ONLY_REF_SPLICE	YES	55	1	0.54	0.98	0.416	0.2278	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,ANGPT1->angiopoietin_1,chr8:108261721-108510283:-	SAOS2_BONE	0.54	0.98	0.6438	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	DDT--HMOX1	13	48	DDT	4753	chr22:24315957:-	HMOX1	15712	chr22:35789461:+	ONLY_REF_SPLICE	YES	568	43	0.1	0.59	0.1288	0.4755	DDT->D-dopachrome_tautomerase,chr22:24313554-24322660:-,HMOX1->chr22:35776354-35790207:+,heme_oxygenase_1	SAOS2_BONE	0.1	0.59	0.6043	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	MSI2--RP11-429O1.1	21	5	MSI2	25423	chr17:55674311:+	RP11-429O1.1	50357	chr17:50609892:+	ONLY_REF_SPLICE	YES	69	0	0.27	1	0.208	0.0495	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,RP11-429O1.1->chr17:50467875-50613061:+	SAOS2_BONE	0.27	1	0.2575	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	RP11-152P17.2--RSPO2	21	2	RP11-152P17.2	1144	chr8:107072609:-	RSPO2	20987	chr8:109001472:-	ONLY_REF_SPLICE	YES	8	9	0.74	0.72	0.208	0.0198	RP11-152P17.2->chr8:106792474-107072752:-,RSPO2->Oncogene{Bushman},R-spondin_2,chr8:108911544-109095913:-	SAOS2_BONE	0.72	0.74	0.2278	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	GLIPR1--RHD	15	17	GLIPR1	11501	chr12:75897304:+	RHD	16134	chr1:25611064:+	INCL_NON_REF_SPLICE	YES	7	0	0.82	1	0.1486	0.1684	GLIPR1->GLI_pathogenesis_related_1,chr12:75874460-75897633:+,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	SAOS2_BONE	0.82	1	0.317	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	R3HDM2--RP11-654D12.2	18	2	R3HDM2	2356	chr12:57789532:-	RP11-654D12.2	34860	chr12:90314844:+	ONLY_REF_SPLICE	YES	3	0	0.87	1	0.1783	0.0198	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,RP11-654D12.2->chr12:90276442-90383066:+	SAOS2_BONE	0.87	1	0.1981	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	GLIPR1--RHD	17	4	GLIPR1	6697	chr12:75892500:+	RHD	16134	chr1:25611064:+	ONLY_REF_SPLICE	YES	278	0	0.07	1	0.1684	0.0396	GLIPR1->GLI_pathogenesis_related_1,chr12:75874460-75897633:+,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	SAOS2_BONE	0.07	1	0.208	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	RP11-152P17.2--RSPO2	17	3	RP11-152P17.2	1144	chr8:107072609:-	RSPO2	16329	chr8:109095035:-	ONLY_REF_SPLICE	YES	8	1	0.71	0.95	0.1684	0.0297	RP11-152P17.2->chr8:106792474-107072752:-,RSPO2->Oncogene{Bushman},R-spondin_2,chr8:108911544-109095913:-	SAOS2_BONE	0.71	0.95	0.1981	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	LARP1B--TBCK	14	2	LARP1B	18863	chr4:129100667:+	TBCK	39811	chr4:107183369:-	ONLY_REF_SPLICE	YES	7	7	0.7	0.7	0.1387	0.0198	LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+,TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-	SAOS2_BONE	0.7	0.7	0.1585	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	DDT--HMOX1	5	28	DDT	4214	chr22:24316496:-	HMOX1	15712	chr22:35789461:+	ONLY_REF_SPLICE	YES	740	43	0.04	0.43	0.0495	0.2774	DDT->D-dopachrome_tautomerase,chr22:24313554-24322660:-,HMOX1->chr22:35776354-35790207:+,heme_oxygenase_1	SAOS2_BONE	0.04	0.43	0.3269	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	GLIPR1--RHD	8	8	GLIPR1	6842	chr12:75892645:+	RHD	16134	chr1:25611064:+	INCL_NON_REF_SPLICE	YES	259	0	0.06	1	0.0792	0.0792	GLIPR1->GLI_pathogenesis_related_1,chr12:75874460-75897633:+,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	SAOS2_BONE	0.06	1	0.1584	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	TBCK--PHF20	9	2	TBCK	7962	chr4:107216251:-	PHF20	65707	chr20:34487292:+	ONLY_REF_SPLICE	YES	6	0	0.65	1	0.0891	0.0198	TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	SAOS2_BONE	0.65	1	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	OXR1--ANGPT1	5	8	OXR1	9783	chr8:107670313:+	ANGPT1	36681	chr8:108359325:-	ONLY_REF_SPLICE	YES	62	1	0.17	0.93	0.0495	0.0792	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,ANGPT1->angiopoietin_1,chr8:108261721-108510283:-	SAOS2_BONE	0.17	0.93	0.1287	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	OMA1--RP11-91K9.1	6	2	OMA1	10671	chr1:58971732:-	RP11-91K9.1	22869	chr3:177613401:+	ONLY_REF_SPLICE	YES	23	0	0.26	1	0.0594	0.0198	OMA1->OMA1_zinc_metallopeptidase,chr1:58881056-59012474:-,RP11-91K9.1->chr3:177534653-177617012:+	SAOS2_BONE	0.26	1	0.0792	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	EIF4G3--RHD	4	2	EIF4G3	21194	chr1:21267984:-	RHD	62961	chr1:25643491:+	ONLY_REF_SPLICE	YES	115	7	0.05	0.46	0.0396	0.0198	EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	SAOS2_BONE	0.05	0.46	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	PDPR--ADAT1	4	2	PDPR	6367	chr16:70163025:+	ADAT1	32504	chr16:75652538:-	ONLY_REF_SPLICE	YES	16	28	0.27	0.18	0.0396	0.0198	PDPR->chr16:70147529-70195203:+,pyruvate_dehydrogenase_phosphatase_regulatory_subunit,ADAT1->adenosine_deaminase,_tRNA_specific_1,chr16:75630879-75657198:-	SAOS2_BONE	0.18	0.27	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	CTD-2251F13.1--PRKD1	4	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	SAOS2_BONE	1	1	0.0396	TRUE	0	3	0	9	3	TRUE	ACH-000410
SAOS2_BONE	DIP2C--MLTK	1	8	DIP2C	1250	chr10:735434:-	MLTK	55014	chr2:174034533:+	ONLY_REF_SPLICE	YES	16	79	0.36	0.1	0.0099	0.0792	DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,MLTK->chr2:173940163-174132738:+	SAOS2_BONE	0.1	0.36	0.0891	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	OXR1--ANGPT1	3	0	OXR1	4606	chr8:107531367:+	ANGPT1	36681	chr8:108359325:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,ANGPT1->angiopoietin_1,chr8:108261721-108510283:-	SAOS2_BONE	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	RPS6KA1--FABP3	3	0	RPS6KA1	8219	chr1:26873761:+	FABP3	28684	chr1:31842404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	RPS6KA1->Oncogene{Bushman},chr1:26856252-26901521:+,ribosomal_protein_S6_kinase_A1,FABP3->Oncogene{Bushman},chr1:31838472-31849697:-,fatty_acid_binding_protein_3	SAOS2_BONE	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	TBC1D15--EPHB2	3	0	TBC1D15	1105	chr12:72233591:+	EPHB2	32930	chr1:23107914:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	TBC1D15->TBC1_domain_family_member_15,chr12:72233487-72320629:+,EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+	SAOS2_BONE	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	CHSY1--CAPZB	2	0	CHSY1	4362	chr15:101775287:-	CAPZB	19882	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CHSY1->chondroitin_sulfate_synthase_1,chr15:101715928-101792137:-,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	SAOS2_BONE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	SAOS2_BONE	1	1	0.0198	TRUE	0	1	0	7	1	TRUE	ACH-000410
SAOS2_BONE	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	SAOS2_BONE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	12223	chr14:30660656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	SAOS2_BONE	1	1	0.0198	TRUE	0	0	0	4	0	TRUE	ACH-000410
SAOS2_BONE	EIF4G3--RHD	2	0	EIF4G3	18245	chr1:21295967:-	RHD	62961	chr1:25643491:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	SAOS2_BONE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	RALY--CHMP4B	2	0	RALY	3636	chr20:32619410:+	CHMP4B	18941	chr20:32436273:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1},RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+,CHMP4B->charged_multivesicular_body_protein_4B,chr20:32399110-32442172:+	SAOS2_BONE	1	1	0.0198	TRUE	0	1	0	1	1	TRUE	ACH-000410
SAOS2_BONE	RP11-152P17.2--RSPO2	2	0	RP11-152P17.2	1144	chr8:107072609:-	RSPO2	22176	chr8:108973045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	RP11-152P17.2->chr8:106792474-107072752:-,RSPO2->Oncogene{Bushman},R-spondin_2,chr8:108911544-109095913:-	SAOS2_BONE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	MSI2--RP11-429O1.1	1	3	MSI2	25423	chr17:55674311:+	RP11-429O1.1	51420	chr17:50612093:+	ONLY_REF_SPLICE	YES	69	1	0.05	0.8	0.0099	0.0297	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,RP11-429O1.1->chr17:50467875-50613061:+	SAOS2_BONE	0.05	0.8	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	TBCK--PHF20	1	1	TBCK	7962	chr4:107216251:-	PHF20	66986	chr20:34501171:+	ONLY_REF_SPLICE	YES	6	4	0.25	0.33	0.0099	0.0099	TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	SAOS2_BONE	0.25	0.33	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000410
MDAPCA2B_PROSTATE	TRA2B--EHHADH	194	72	TRA2B	16076	chr3:185637225:-	EHHADH	26108	chr3:184966305:-	ONLY_REF_SPLICE	YES	162	0	0.62	1	2.8264	1.049	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),EHHADH->chr3:184908412-184999778:-,enoyl-CoA,_hydratase/3-hydroxyacyl_CoA_dehydrogenase	MDAPCA2B_PROSTATE	0.62	1	3.8754	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	96	38	TTC6	2242	chr14:38075947:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	74	62	0.64	0.68	1.3986	0.5536	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.64	0.68	1.9522	TRUE	0	13	0	3	11	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	59	55	TTC6	2242	chr14:38075947:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	74	31	0.61	0.79	0.8596	0.8013	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.61	0.79	1.6609	TRUE	0	3	0	4	3	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	22	58	TTC6	5307	chr14:38092208:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	9	62	0.9	0.56	0.3205	0.845	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.56	0.9	1.1655	TRUE	0	2	0	1	1	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	22	43	TTC6	2242	chr14:38075947:+	MIPOL1	77335	chr14:37892060:+	ONLY_REF_SPLICE	YES	74	46	0.47	0.59	0.3205	0.6265	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.47	0.59	0.947	TRUE	0	4	0	4	2	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	27	11	TTC6	2242	chr14:38075947:+	MIPOL1	90133	chr14:38016110:+	ONLY_REF_SPLICE	YES	74	105	0.34	0.27	0.3934	0.1603	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.27	0.34	0.5537	TRUE	0	9	0	2	8	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	17	37	TTC6	1162	chr14:38065213:+	MIPOL1	61096	chr14:37716308:+	ONLY_REF_SPLICE	YES	48	26	0.53	0.68	0.2477	0.5391	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.53	0.68	0.7868	TRUE	0	0	0	2	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	20	22	TTC6	1162	chr14:38065213:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	48	62	0.47	0.4	0.2914	0.3205	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.4	0.47	0.6119	TRUE	0	9	0	5	8	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	16	21	TTC6	5307	chr14:38092208:+	MIPOL1	90133	chr14:38016110:+	ONLY_REF_SPLICE	YES	9	105	0.8	0.26	0.2331	0.306	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.26	0.8	0.5391	TRUE	0	4	0	2	3	TRUE	ACH-000952
MDAPCA2B_PROSTATE	C8orf31--LY6E	16	15	C8orf31	3373	chr8:144124679:+	LY6E	16452	chr8:144102300:+	ONLY_REF_SPLICE	YES	0	95	1	0.25	0.2331	0.2185	LOCAL_REARRANGEMENT:+:[15377],C8orf31->chr8:144120626-144141359:+,chromosome_8_open_reading_frame_31,LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E	MDAPCA2B_PROSTATE	0.25	1	0.4516	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	5	31	TTC6	1162	chr14:38065213:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	48	31	0.43	0.54	0.0728	0.4516	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.43	0.54	0.5244	TRUE	0	3	0	4	2	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	1	43	TTC6	2242	chr14:38075947:+	MIPOL1	76296	chr14:37866181:+	ONLY_REF_SPLICE	YES	74	52	0.37	0.46	0.0146	0.6265	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.37	0.46	0.6411	TRUE	0	3	0	1	1	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	1	37	TTC6	1162	chr14:38065213:+	MIPOL1	58837	chr14:37696931:+	ONLY_REF_SPLICE	YES	48	20	0.44	0.66	0.0146	0.5391	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.44	0.66	0.5537	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	2	32	TTC6	1162	chr14:38065213:+	MIPOL1	63976	chr14:37736143:+	ONLY_REF_SPLICE	YES	48	35	0.41	0.49	0.0291	0.4662	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.41	0.49	0.4953	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	KMT2C--RP11-328J2.1	7	5	KMT2C	3611	chr7:152027686:-	RP11-328J2.1	75926	chr7:119440928:-	ONLY_REF_SPLICE	YES	11	0	0.52	1	0.102	0.0728	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,RP11-328J2.1->chr7:119344610-119547429:-	MDAPCA2B_PROSTATE	0.52	1	0.1748	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	AC010547.9--SLC26A8	5	11	AC010547.9	5314	chr16:71512131:-	SLC26A8	37797	chr6:35912117:-	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.0728	0.1603	AC010547.9->chr16:71481503-71523214:-,SLC26A8->chr6:35911291-35992645:-,solute_carrier_family_26_member_8	MDAPCA2B_PROSTATE	0.89	1	0.2331	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	1	25	TTC6	1162	chr14:38065213:+	MIPOL1	77335	chr14:37892060:+	ONLY_REF_SPLICE	YES	48	46	0.35	0.36	0.0146	0.3642	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.35	0.36	0.3788	TRUE	0	2	0	1	2	TRUE	ACH-000952
MDAPCA2B_PROSTATE	GLG1--WDR59	5	1	GLG1	1458	chr16:74640555:-	WDR59	40847	chr16:74999720:-	ONLY_REF_SPLICE	YES	40	10	0.13	0.38	0.0728	0.0146	GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-	MDAPCA2B_PROSTATE	0.13	0.38	0.0874	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	C8orf31--LY6E	1	15	C8orf31	3373	chr8:144124679:+	LY6E	16457	chr8:144102305:+	ONLY_REF_SPLICE	YES	0	90	1	0.15	0.0146	0.2185	LOCAL_REARRANGEMENT:+:[15377],C8orf31->chr8:144120626-144141359:+,chromosome_8_open_reading_frame_31,LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E	MDAPCA2B_PROSTATE	0.15	1	0.2331	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	SLC25A21--MIPOL1	2	6	SLC25A21	1586	chr14:37641486:-	MIPOL1	25364	chr14:37716308:+	ONLY_REF_SPLICE	YES	8	26	0.5	0.24	0.0291	0.0874	LOCAL_INVERSION:-:+:[25047],SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.24	0.5	0.1165	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	FASN--RPS28	3	0	FASN	1174	chr17:80056035:-	RPS28	23122	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MDAPCA2B_PROSTATE	1	1	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	SLC25A21--MIPOL1	1	7	SLC25A21	1586	chr14:37641486:-	MIPOL1	20838	chr14:37681435:+	ONLY_REF_SPLICE	YES	8	17	0.5	0.32	0.0146	0.102	LOCAL_INVERSION:-:+:[25047],SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.32	0.5	0.1166	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	SLC25A21--MIPOL1	1	7	SLC25A21	1586	chr14:37641486:-	MIPOL1	21966	chr14:37688758:+	ONLY_REF_SPLICE	NO	8	24	0.5	0.25	0.0146	0.102	LOCAL_INVERSION:-:+:[25047],SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.25	0.5	0.1166	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	FTO--AKTIP	2	0	FTO	1267	chr16:53738141:+	AKTIP	35537	chr16:53534241:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	GTEx&tcga_normals:1/3694=0.03%,FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated,AKTIP->AKT_interacting_protein,chr16:53524952-53538323:-	MDAPCA2B_PROSTATE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	GDF15--CTD-2207O23.12	2	0	GDF15	4101	chr19:18497276:+	CTD-2207O23.12	11757	chr19:7584091:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	GDF15->Oncogene{Bushman},chr19:18485541-18499986:+,growth_differentiation_factor_15,CTD-2207O23.12->chr19:7571938-7584508:+	MDAPCA2B_PROSTATE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	RP11-435B5.4--AC079776.7	2	0	RP11-435B5.4	2843	chr1:143465380:-	AC079776.7	23272	chr2:130726375:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	RP11-435B5.4->chr1:143354963-143467632:-,AC079776.7->chr2:130724165-130738039:-	MDAPCA2B_PROSTATE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TP53BP2--RP11-592B15.4	2	0	TP53BP2	1319	chr1:224033356:-	RP11-592B15.4	27492	chr10:51364771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2,RP11-592B15.4->chr10:51287081-51371070:-	MDAPCA2B_PROSTATE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	KMT2C--RP11-328J2.1	1	1	KMT2C	3611	chr7:152027686:-	RP11-328J2.1	76985	chr7:119422411:-	ONLY_REF_SPLICE	NO	11	0	0.15	1	0.0146	0.0146	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,RP11-328J2.1->chr7:119344610-119547429:-	MDAPCA2B_PROSTATE	0.15	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	MORN4--SHOC2	1	1	MORN4	1241	chr10:99393104:-	SHOC2	12075	chr10:112723883:+	ONLY_REF_SPLICE	NO	48	4	0.04	0.33	0.0146	0.0146	MORN4->MORN_repeat_containing_4,chr10:99374310-99393344:-,SHOC2->SHOC2_leucine-rich_repeat_scaffold_protein,chr10:112679301-112773425:+	MDAPCA2B_PROSTATE	0.04	0.33	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000952
LXF289_LUNG	RPL9P9--ERAL1	268	199	RPL9P9	2430	chr15:82664702:-	ERAL1	5883	chr17:27182165:+	INCL_NON_REF_SPLICE	YES	718	96	0.39	0.83	3.5804	2.6586	RPL9P9->chr15:82664459-82748784:-,ribosomal_protein_L9_pseudogene_9,ERAL1->Era_like_12S_mitochondrial_rRNA_chaperone_1,chr17:27181956-27188085:+	LXF289_LUNG	0.39	0.83	6.239	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	RPL9P9--ERAL1	84	73	RPL9P9	2430	chr15:82664702:-	ERAL1	7000	chr17:27183282:+	INCL_NON_REF_SPLICE	YES	718	211	0.18	0.43	1.1222	0.9752	RPL9P9->chr15:82664459-82748784:-,ribosomal_protein_L9_pseudogene_9,ERAL1->Era_like_12S_mitochondrial_rRNA_chaperone_1,chr17:27181956-27188085:+	LXF289_LUNG	0.18	0.43	2.0974	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	GLCE--NOX5	7	0	GLCE	1174	chr15:69453096:+	NOX5	19550	chr15:69318868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0935	0	LOCAL_REARRANGEMENT:+:[97840],GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase,NOX5->NADPH_oxidase,_EF-hand_calcium_binding_domain_5,chr15:69222864-69355083:+	LXF289_LUNG	1	1	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	YIF1B--GGN	5	1	YIF1B	2217	chr19:38806509:-	GGN	12298	chr19:38877669:-	ONLY_REF_SPLICE	YES	6	2	0.5	0.75	0.0668	0.0134	LOCAL_REARRANGEMENT:-:[66992],YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-,GGN->chr19:38874905-38878722:-,gametogenetin	LXF289_LUNG	0.5	0.75	0.0802	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	YIF1B--GGN	4	1	YIF1B	2217	chr19:38806509:-	GGN	11505	chr19:38878462:-	ONLY_REF_SPLICE	YES	6	1	0.45	0.83	0.0534	0.0134	LOCAL_REARRANGEMENT:-:[66992],YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-,GGN->chr19:38874905-38878722:-,gametogenetin	LXF289_LUNG	0.45	0.83	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	YIF1B--GGN	2	1	YIF1B	2217	chr19:38806509:-	GGN	12047	chr19:38877920:-	ONLY_REF_SPLICE	YES	6	1	0.33	0.75	0.0267	0.0134	LOCAL_REARRANGEMENT:-:[66992],YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-,GGN->chr19:38874905-38878722:-,gametogenetin	LXF289_LUNG	0.33	0.75	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	C17orf76-AS1--SMAD2	2	0	C17orf76-AS1	1593	chr17:16342728:+	SMAD2	18292	chr18:45423180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	C17orf76-AS1->chr17:16342136-16381992:+,SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-	LXF289_LUNG	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	STAG3L1--MAD1L1	2	0	STAG3L1	8935	chr7:75014432:+	MAD1L1	42165	chr7:2041756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	STAG3L1->chr7:74988448-75024657:+,stromal_antigen_3-like_1_(pseudogene),MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	LXF289_LUNG	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	TMEM120B--KLC1	2	0	TMEM120B	1213	chr12:122150870:+	KLC1	37806	chr14:104153418:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	LXF289_LUNG	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	TASP1--RP5-1069C8.2	1	1	TASP1	21244	chr20:13296617:-	RP5-1069C8.2	29257	chr20:12921584:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0134	0.0134	TASP1->chr20:13246709-13619587:-,taspase_1,RP5-1069C8.2->chr20:12845850-12933167:-	LXF289_LUNG	1	1	0.0268	TRUE	1	0	0	3	0	TRUE	ACH-000787
LXF289_LUNG	YIF1B--GGN	1	1	YIF1B	2226	chr19:38806500:-	GGN	12298	chr19:38877669:-	ONLY_REF_SPLICE	YES	17	2	0.11	0.5	0.0134	0.0134	LOCAL_REARRANGEMENT:-:[66992],YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-,GGN->chr19:38874905-38878722:-,gametogenetin	LXF289_LUNG	0.11	0.5	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	YIF1B--GGN	1	1	YIF1B	2226	chr19:38806500:-	GGN	12047	chr19:38877920:-	ONLY_REF_SPLICE	YES	17	1	0.11	0.67	0.0134	0.0134	LOCAL_REARRANGEMENT:-:[66992],YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-,GGN->chr19:38874905-38878722:-,gametogenetin	LXF289_LUNG	0.11	0.67	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000787
MALME3M_SKIN	KIAA0556--EME2	50	23	KIAA0556	21697	chr16:27751783:+	EME2	47195	chr16:1828416:+	INCL_NON_REF_SPLICE	YES	5	41	0.94	0.64	0.6413	0.295	KIAA0556->KIAA0556,chr16:27561454-27791690:+,EME2->chr16:1823208-1831709:+,essential_meiotic_structure-specific_endonuclease_subunit_2	MALME3M_SKIN	0.64	0.94	0.9363	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	MAPK8IP3--ABAT	52	7	MAPK8IP3	2596	chr16:1774678:+	ABAT	43786	chr16:8857926:+	ONLY_REF_SPLICE	YES	25	5	0.7	0.92	0.6669	0.0898	MAPK8IP3->chr16:1756184-1820318:+,mitogen-activated_protein_kinase_8_interacting_protein_3,ABAT->4-aminobutyrate_aminotransferase,chr16:8768422-8878432:+	MALME3M_SKIN	0.7	0.92	0.7567	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	PARN--ANKS3	50	13	PARN	27201	chr16:14645878:-	ANKS3	46291	chr16:4755254:-	ONLY_REF_SPLICE	YES	112	21	0.36	0.75	0.6413	0.1667	PARN->chr16:14529558-14726585:-,poly(A)-specific_ribonuclease,ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-	MALME3M_SKIN	0.36	0.75	0.808	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	GPR114--SCNN1B	18	3	GPR114	1281	chr16:57576613:+	SCNN1B	23838	chr16:23359913:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2309	0.0385	GPR114->chr16:57576333-57625593:+,SCNN1B->Oncogene{Bushman},chr16:23289552-23392620:+,sodium_channel_epithelial_1_beta_subunit	MALME3M_SKIN	1	1	0.2694	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	DGCR2--RAC2	12	4	DGCR2	1327	chr22:19109641:-	RAC2	20620	chr22:37637698:-	ONLY_REF_SPLICE	YES	204	59	0.07	0.21	0.1539	0.0513	DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-,RAC2->Oncogene{Bushman},chr22:37621301-37640488:-,ras-related_C3_botulinum_toxin_substrate_2_(rho_family,_small_GTP_binding_protein_Rac2)	MALME3M_SKIN	0.07	0.21	0.2052	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	KIFC3--SCNN1B	6	11	KIFC3	23665	chr16:57799371:-	SCNN1B	38467	chr16:23359913:+	ONLY_REF_SPLICE	YES	115	0	0.13	1	0.077	0.1411	KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3,SCNN1B->Oncogene{Bushman},chr16:23289552-23392620:+,sodium_channel_epithelial_1_beta_subunit	MALME3M_SKIN	0.13	1	0.2181	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	KIAA0556--EME2	6	5	KIAA0556	21567	chr16:27751653:+	EME2	47191	chr16:1828412:+	INCL_NON_REF_SPLICE	YES	8	41	0.58	0.21	0.077	0.0641	KIAA0556->KIAA0556,chr16:27561454-27791690:+,EME2->chr16:1823208-1831709:+,essential_meiotic_structure-specific_endonuclease_subunit_2	MALME3M_SKIN	0.21	0.58	0.1411	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	KIFC3--SCNN1B	3	17	KIFC3	24912	chr16:57798055:-	SCNN1B	38467	chr16:23359913:+	ONLY_REF_SPLICE	YES	106	0	0.16	1	0.0385	0.218	KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3,SCNN1B->Oncogene{Bushman},chr16:23289552-23392620:+,sodium_channel_epithelial_1_beta_subunit	MALME3M_SKIN	0.16	1	0.2565	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	SFI1--RFPL2	7	0	SFI1	2459	chr22:31892623:+	RFPL2	46026	chr22:32589179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0898	0	SFI1->SFI1_centrin_binding_protein,chr22:31884674-32014572:+,RFPL2->chr22:32586422-32600718:-,ret_finger_protein_like_2	MALME3M_SKIN	1	1	0.0898	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	EIF4ENIF1--PI4KA	6	1	EIF4ENIF1	2400	chr22:31885680:-	PI4KA	42573	chr22:21156393:-	ONLY_REF_SPLICE	YES	0	109	1	0.06	0.077	0.0128	EIF4ENIF1->chr22:31832963-31892094:-,eukaryotic_translation_initiation_factor_4E_nuclear_import_factor_1,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	MALME3M_SKIN	0.06	1	0.0898	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	ANP32B--APP	3	0	ANP32B	8117	chr9:100773588:+	APP	24328	chr21:27394353:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	MALME3M_SKIN	1	1	0.0385	TRUE	0	0	0	7	0	TRUE	ACH-000477
MALME3M_SKIN	DGCR2--SERHL	2	2	DGCR2	9277	chr22:19044499:-	SERHL	20331	chr22:42897631:+	ONLY_REF_SPLICE	YES	96	0	0.04	1	0.0257	0.0257	DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-,SERHL->chr22:42896585-42908566:+,serine_hydrolase-like_(pseudogene)	MALME3M_SKIN	0.04	1	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	KIAA1644--SNRPD3	2	2	KIAA1644	4732	chr22:44681308:-	SNRPD3	20801	chr22:24977900:+	ONLY_REF_SPLICE	YES	88	1	0.04	0.8	0.0257	0.0257	KIAA1644->KIAA1644,chr22:44639547-44708731:-,SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide	MALME3M_SKIN	0.04	0.8	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	C17orf76-AS1--UBE2D2	2	0	C17orf76-AS1	1593	chr17:16342728:+	UBE2D2	16627	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	C17orf76-AS1->chr17:16342136-16381992:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	MALME3M_SKIN	1	1	0.0257	TRUE	0	2	0	1	1	TRUE	ACH-000477
MALME3M_SKIN	CTC-228N24.3--CAPG	2	0	CTC-228N24.3	1203	chr5:127418662:-	CAPG	26824	chr2:85628711:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	CTC-228N24.3->chr5:127276118-127418864:-,CAPG->Oncogene{Bushman},capping_actin_protein,_gelsolin_like,chr2:85621871-85645555:-	MALME3M_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	SYN3--ISX	2	0	SYN3	5498	chr22:33376630:-	ISX	30488	chr22:35478511:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	SYN3->chr22:32908539-33454358:-,synapsin_III,ISX->chr22:35462129-35483380:+,intestine_specific_homeobox	MALME3M_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	CLDN6--FAHD1	1	1	CLDN6	2408	chr16:3068150:-	FAHD1	10681	chr16:1888017:+	ONLY_REF_SPLICE	YES	0	5	1	0.29	0.0128	0.0128	CLDN6->chr16:3064713-3070072:-,claudin_6,FAHD1->chr16:1876968-1890208:+,fumarylacetoacetate_hydrolase_domain_containing_1	MALME3M_SKIN	0.29	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000477
JHH4_LIVER	MAN2A1--CDK14	54	17	MAN2A1	26690	chr5:109191035:+	CDK14	60577	chr7:90675212:+	ONLY_REF_SPLICE	YES	77	72	0.48	0.5	0.6541	0.2059	{Klijn_CCL:Liver=1},MAN2A1->chr5:109025067-109205326:+,mannosidase_alpha_class_2A_member_1,CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14	JHH4_LIVER	0.48	0.5	0.86	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	ADAM22--CAV2	24	7	ADAM22	4172	chr7:87607727:+	CAV2	61938	chr7:116067376:+	ONLY_REF_SPLICE	YES	5	0	0.86	1	0.2907	0.0848	ADAM22->ADAM_metallopeptidase_domain_22,chr7:87563458-87832204:+,CAV2->caveolin_2,chr7:115927434-116148595:+	JHH4_LIVER	0.86	1	0.3755	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	VOPP1--MRPS17	22	2	VOPP1	1718	chr7:55639964:-	MRPS17	29369	chr7:55990855:+	ONLY_REF_SPLICE	YES	41	4	0.37	0.86	0.2665	0.0242	VOPP1->chr7:55503749-55640681:-,vesicular,_overexpressed_in_cancer,_prosurvival_protein_1,MRPS17->chr7:55954970-56022932:+,chr7:56019512-56024192:+,mitochondrial_ribosomal_protein_S17	JHH4_LIVER	0.37	0.86	0.2907	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	NRG1--RP11-150O12.1	19	10	NRG1	8502	chr8:32474403:+	RP11-150O12.1	38725	chr8:37279087:-	ONLY_REF_SPLICE	YES	54	1	0.35	0.97	0.2301	0.1211	NRG1->chr8:31496902-32622548:+,neuregulin_1,RP11-150O12.1->chr8:37278859-37411701:-	JHH4_LIVER	0.35	0.97	0.3512	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	ME3--TYR	10	1	ME3	1875	chr11:86382804:-	TYR	25842	chr11:88924370:+	ONLY_REF_SPLICE	YES	6	0	0.65	1	0.1211	0.0121	{Klijn_CCL:Liver=1},ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3,TYR->chr11:88910620-89028927:+,tyrosinase	JHH4_LIVER	0.65	1	0.1332	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	NRG1--RP11-150O12.1	6	12	NRG1	8502	chr8:32474403:+	RP11-150O12.1	37069	chr8:37289305:-	ONLY_REF_SPLICE	YES	54	0	0.25	1	0.0727	0.1453	NRG1->chr8:31496902-32622548:+,neuregulin_1,RP11-150O12.1->chr8:37278859-37411701:-	JHH4_LIVER	0.25	1	0.218	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	ADAM22--AOAH	6	0	ADAM22	7418	chr7:87737573:+	AOAH	53411	chr7:36677516:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0727	0	ADAM22->ADAM_metallopeptidase_domain_22,chr7:87563458-87832204:+,AOAH->acyloxyacyl_hydrolase,chr7:36552456-36764154:-	JHH4_LIVER	1	1	0.0727	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	USP28--DLG2	4	1	USP28	1126	chr11:113746167:-	DLG2	55116	chr11:83962334:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0484	0.0121	{Klijn_CCL:Liver=1},USP28->chr11:113668596-113746292:-,ubiquitin_specific_peptidase_28,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	JHH4_LIVER	0.45	1	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	AC104389.28--HBE1	2	0	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JHH4_LIVER	1	1	0.0242	TRUE	0	0	0	9	0	TRUE	ACH-000476
JHH4_LIVER	ANKS1B--GAS2L3	2	0	ANKS1B	1551	chr12:100377882:-	GAS2L3	60746	chr12:100988653:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-,GAS2L3->chr12:100967461-101022064:+,growth_arrest_specific_2_like_3	JHH4_LIVER	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	LMBRD1--FAM135A	2	0	LMBRD1	10338	chr6:70423537:-	FAM135A	37197	chr6:71232216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	LMBRD1->LMBR1_domain_containing_1,chr6:70385694-70507003:-,FAM135A->chr6:71122644-71270877:+,family_with_sequence_similarity_135_member_A	JHH4_LIVER	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	RP13-650J16.1--TPD52L2	2	0	RP13-650J16.1	1509	chr17:79996289:+	TPD52L2	9974	chr20:62514072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RP13-650J16.1->chr17:79995781-79997256:+,TPD52L2->chr20:62496596-62522898:+,tumor_protein_D52_like_2	JHH4_LIVER	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	TMEM135--NAALAD2	1	2	TMEM135	3570	chr11:86782657:+	NAALAD2	26291	chr11:89865262:+	ONLY_REF_SPLICE	YES	23	0	0.12	1	0.0121	0.0242	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,NAALAD2->N-acetylated_alpha-linked_acidic_dipeptidase_2,chr11:89864683-89926062:+	JHH4_LIVER	0.12	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	ADAM22--CAV2	1	1	ADAM22	4172	chr7:87607727:+	CAV2	66525	chr7:116139298:+	ONLY_REF_SPLICE	NO	5	0	0.29	1	0.0121	0.0121	ADAM22->ADAM_metallopeptidase_domain_22,chr7:87563458-87832204:+,CAV2->caveolin_2,chr7:115927434-116148595:+	JHH4_LIVER	0.29	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	ADAM22--CAV2	1	1	ADAM22	4172	chr7:87607727:+	CAV2	65310	chr7:116137823:+	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0121	0.0121	ADAM22->ADAM_metallopeptidase_domain_22,chr7:87563458-87832204:+,CAV2->caveolin_2,chr7:115927434-116148595:+	JHH4_LIVER	0.29	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000476
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	575	231	ARHGAP21	2832	chr10:25010766:-	ARMC4	55475	chr10:28196706:-	ONLY_REF_SPLICE	YES	16	18	0.98	0.98	7.7293	3.1051	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.98	0.98	10.8344	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PWP2--ASIP	589	80	PWP2	5426	chr21:45535801:+	ASIP	22984	chr20:32850638:+	ONLY_REF_SPLICE	YES	46	0	0.94	1	7.9175	1.0754	PWP2->PWP2_periodic_tryptophan_protein_homolog_(yeast),chr21:45527171-45551063:+,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	KYSE270_OESOPHAGUS	0.94	1	8.9929	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	GLG1--FA2H	287	61	GLG1	1458	chr16:74640555:-	FA2H	38262	chr16:74774013:-	ONLY_REF_SPLICE	YES	29	7	0.92	0.98	3.8579	0.82	{Klijn_CCL:Head-Neck=1,Breast=1},GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,FA2H->chr16:74746853-74808729:-,fatty_acid_2-hydroxylase	KYSE270_OESOPHAGUS	0.92	0.98	4.6779	TRUE	0	0	0	2	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	76	111	ARHGAP21	2832	chr10:25010766:-	ARMC4	56590	chr10:28151551:-	ONLY_REF_SPLICE	YES	16	85	0.92	0.69	1.0216	1.4921	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.69	0.92	2.5137	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	23	234	ARHGAP21	2832	chr10:25010766:-	ARMC4	53077	chr10:28225809:-	ONLY_REF_SPLICE	YES	16	3	0.94	0.99	0.3092	3.1455	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.94	0.99	3.4547	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	9	234	ARHGAP21	2832	chr10:25010766:-	ARMC4	51966	chr10:28228936:-	ONLY_REF_SPLICE	YES	16	5	0.94	0.98	0.121	3.1455	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.94	0.98	3.2665	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	DNAJB6--UBE3C	58	16	DNAJB6	20269	chr7:157178305:+	UBE3C	54589	chr7:157023774:+	ONLY_REF_SPLICE	YES	123	40	0.38	0.65	0.7796	0.2151	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[66009],DNAJB6->DnaJ_heat_shock_protein_family_(Hsp40)_member_B6,chr7:157128075-157210133:+,UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C	KYSE270_OESOPHAGUS	0.38	0.65	0.9947	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	4	231	ARHGAP21	2831	chr10:25010767:-	ARMC4	55462	chr10:28196719:-	INCL_NON_REF_SPLICE	YES	16	19	0.94	0.93	0.0538	3.1051	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.93	0.94	3.1589	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	3	233	ARHGAP21	2832	chr10:25010766:-	ARMC4	54232	chr10:28224181:-	ONLY_REF_SPLICE	NO	16	5	0.94	0.98	0.0403	3.132	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.94	0.98	3.1723	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	1	231	ARHGAP21	3914	chr10:25003226:-	ARMC4	55475	chr10:28196706:-	ONLY_REF_SPLICE	YES	17	18	0.93	0.93	0.0134	3.1051	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.93	0.93	3.1185	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	FAM49B--ASAP1	50	17	FAM49B	8896	chr8:130915558:-	ASAP1	68548	chr8:131073315:-	ONLY_REF_SPLICE	YES	101	30	0.4	0.69	0.6721	0.2285	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[34978],FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-	KYSE270_OESOPHAGUS	0.4	0.69	0.9006	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PTK2--CASC7	42	22	PTK2	12863	chr8:141900642:-	CASC7	74121	chr8:141530787:-	INCL_NON_REF_SPLICE	YES	45	28	0.59	0.7	0.5646	0.2957	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,CASC7->cancer_susceptibility_candidate_7_(non-protein_coding),chr8:141530255-141539600:-	KYSE270_OESOPHAGUS	0.59	0.7	0.8603	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	CTD-3105H18.16--ATP13A5	40	7	CTD-3105H18.16	1171	chr19:12551726:-	ATP13A5	6615	chr3:193096664:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.5377	0.0941	CTD-3105H18.16->chr19:12502763-12551896:-,ATP13A5->ATPase_13A5,chr3:192992579-193096632:-	KYSE270_OESOPHAGUS	0.98	1	0.6318	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ABI1--RP11-556E13.1	27	11	ABI1	3560	chr10:27112067:-	RP11-556E13.1	21048	chr10:54320875:-	ONLY_REF_SPLICE	YES	33	0	0.54	1	0.3629	0.1479	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,RP11-556E13.1->chr10:54316462-54515169:-	KYSE270_OESOPHAGUS	0.54	1	0.5108	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	SMPD4P1--VWA9	28	1	SMPD4P1	1051	chr22:21011151:-	VWA9	28169	chr15:65888163:-	ONLY_REF_SPLICE	YES	0	36	1	0.45	0.3764	0.0134	SMPD4P1->chr22:20956882-21011201:-,sphingomyelin_phosphodiesterase_4_pseudogene_1,VWA9->chr15:65871091-65903627:-,von_Willebrand_factor_A_domain_containing_9	KYSE270_OESOPHAGUS	0.45	1	0.3898	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	AC012501.2--FMNL2	23	9	AC012501.2	1429	chr2:154449373:-	FMNL2	9469	chr2:153378457:+	ONLY_REF_SPLICE	YES	0	12	1	0.73	0.3092	0.121	AC012501.2->chr2:154278130-154449801:-,FMNL2->chr2:153191751-153506348:+,formin_like_2	KYSE270_OESOPHAGUS	0.73	1	0.4302	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	APOLD1--CREBL2	22	9	APOLD1	1180	chr12:12879030:+	CREBL2	24756	chr12:12788711:+	ONLY_REF_SPLICE	YES	5	16	0.86	0.66	0.2957	0.121	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[80809],APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+	KYSE270_OESOPHAGUS	0.66	0.86	0.4167	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	INPP4A--TRIP13	18	0	INPP4A	1232	chr2:99061548:+	TRIP13	51000	chr5:911958:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.242	0	INPP4A->chr2:99061317-99210853:+,inositol_polyphosphate-4-phosphatase_type_I_A,TRIP13->chr5:892758-919472:+,thyroid_hormone_receptor_interactor_13	KYSE270_OESOPHAGUS	1	1	0.242	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	FHOD3--GALNT1	16	5	FHOD3	3459	chr18:33952707:+	GALNT1	56197	chr18:33289588:+	ONLY_REF_SPLICE	YES	14	149	0.6	0.12	0.2151	0.0672	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1	KYSE270_OESOPHAGUS	0.12	0.6	0.2823	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	HGSNAT--HOOK3	17	1	HGSNAT	2318	chr8:43002206:+	HOOK3	52037	chr8:42865448:+	ONLY_REF_SPLICE	YES	17	17	0.51	0.51	0.2285	0.0134	GTEx&tcga_normals:1/3694=0.03%,HGSNAT->chr8:42995556-43057998:+,heparan-alpha-glucosaminide_N-acetyltransferase,HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3	KYSE270_OESOPHAGUS	0.51	0.51	0.2419	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	RCL1--INSL4	12	2	RCL1	3607	chr9:4827033:+	INSL4	20493	chr9:5233654:+	ONLY_REF_SPLICE	YES	22	0	0.39	1	0.1613	0.0269	RCL1->RNA_terminal_phosphate_cyclase_like_1,chr9:4792869-4885917:+,INSL4->chr9:5231419-5235304:+,insulin_like_4	KYSE270_OESOPHAGUS	0.39	1	0.1882	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	CCDC57--NOTUM	12	1	CCDC57	1046	chr17:80170661:-	NOTUM	46535	chr17:79914950:-	ONLY_REF_SPLICE	YES	0	27	1	0.33	0.1613	0.0134	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,NOTUM->NOTUM,_palmitoleoyl-protein_carboxylesterase,chr17:79910388-79919716:-	KYSE270_OESOPHAGUS	0.33	1	0.1747	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PIGU--AC097495.2	12	1	PIGU	1151	chr20:33264760:-	AC097495.2	22096	chr2:69064514:+	ONLY_REF_SPLICE	YES	56	0	0.19	1	0.1613	0.0134	PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,AC097495.2->chr2:69059176-69064856:+	KYSE270_OESOPHAGUS	0.19	1	0.1747	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	EDEM2--DNAH14	10	5	EDEM2	16975	chr20:33706401:-	DNAH14	93065	chr1:225492610:+	ONLY_REF_SPLICE	YES	109	0	0.12	1	0.1344	0.0672	{Klijn_CCL:Head-Neck=1},EDEM2->ER_degradation_enhancing_alpha-mannosidase_like_protein_2,chr20:33703167-33865928:-,DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14	KYSE270_OESOPHAGUS	0.12	1	0.2016	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PTPRA--TMC2	11	1	PTPRA	3475	chr20:2854406:+	TMC2	36862	chr20:2572956:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.1479	0.0134	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,TMC2->chr20:2517253-2622430:+,transmembrane_channel_like_2	KYSE270_OESOPHAGUS	0.8	1	0.1613	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PTK2--CASC7	4	22	PTK2	12863	chr8:141900642:-	CASC7	72700	chr8:141532208:-	INCL_NON_REF_SPLICE	YES	45	20	0.37	0.57	0.0538	0.2957	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,CASC7->cancer_susceptibility_candidate_7_(non-protein_coding),chr8:141530255-141539600:-	KYSE270_OESOPHAGUS	0.37	0.57	0.3495	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	5	12	ARHGAP21	2832	chr10:25010766:-	ARMC4	62123	chr10:28101554:-	ONLY_REF_SPLICE	YES	16	207	0.52	0.08	0.0672	0.1613	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.08	0.52	0.2285	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PACS1--OVOL1	7	4	PACS1	14012	chr11:65988718:+	OVOL1	35564	chr11:65561502:+	ONLY_REF_SPLICE	YES	48	18	0.19	0.38	0.0941	0.0538	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,OVOL1->chr11:65554493-65564690:+,ovo_like_zinc_finger_1	KYSE270_OESOPHAGUS	0.19	0.38	0.1479	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ALDH1A3--RP11-66B24.5	4	6	ALDH1A3	16368	chr15:101448687:+	RP11-66B24.5	24566	chr15:101368331:+	ONLY_REF_SPLICE	YES	224	0	0.04	1	0.0538	0.0807	LOCAL_REARRANGEMENT:+:[49217],ALDH1A3->aldehyde_dehydrogenase_1_family_member_A3,chr15:101417919-101456831:+,RP11-66B24.5->chr15:101256454-101368702:+	KYSE270_OESOPHAGUS	0.04	1	0.1345	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	CCAT1--CASC8	5	2	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	45	1	0.13	0.88	0.0672	0.0269	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	KYSE270_OESOPHAGUS	0.13	0.88	0.0941	TRUE	0	26	0	18	24	TRUE	ACH-000873
KYSE270_OESOPHAGUS	FAM49B--ASAP1	1	18	FAM49B	10430	chr8:130908918:-	ASAP1	68548	chr8:131073315:-	ONLY_REF_SPLICE	NO	113	30	0.14	0.39	0.0134	0.242	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[34978],FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-	KYSE270_OESOPHAGUS	0.14	0.39	0.2554	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	HYDIN--CTD-2231H16.1	5	1	HYDIN	1161	chr16:71264465:-	CTD-2231H16.1	110792	chr5:113366:+	ONLY_REF_SPLICE	YES	2	10	0.75	0.38	0.0672	0.0134	HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-,CTD-2231H16.1->chr5:92266-139978:+	KYSE270_OESOPHAGUS	0.38	0.75	0.0806	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	SPIDR--RP11-1134I14.8	5	0	SPIDR	7740	chr8:48206619:+	RP11-1134I14.8	40823	chr8:48103346:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0672	0	LOCAL_REARRANGEMENT:+:[68282],SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,RP11-1134I14.8->chr8:48102395-48104885:+	KYSE270_OESOPHAGUS	1	1	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ZNF324--NEO1	5	0	ZNF324	3368	chr19:58981211:+	NEO1	17137	chr15:73468744:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0672	0	{Klijn_CCL:Head-Neck=1},ZNF324->chr19:58978423-58984945:+,zinc_finger_protein_324,NEO1->chr15:73344051-73597547:+,neogenin_1	KYSE270_OESOPHAGUS	1	1	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	TLK1--METTL8	4	2	TLK1	7437	chr2:171974249:-	METTL8	47363	chr2:172188377:-	ONLY_REF_SPLICE	YES	11	13	0.35	0.32	0.0538	0.0269	LOCAL_REARRANGEMENT:-:[86095],TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1,METTL8->chr2:172173919-172291312:-,methyltransferase_like_8	KYSE270_OESOPHAGUS	0.32	0.35	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	XPR1--RP11-522D2.1	4	1	XPR1	2319	chr1:180651547:+	RP11-522D2.1	27467	chr1:180531340:+	ONLY_REF_SPLICE	YES	64	0	0.07	1	0.0538	0.0134	LOCAL_REARRANGEMENT:+:[65486],XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,RP11-522D2.1->chr1:180528112-180535654:+	KYSE270_OESOPHAGUS	0.07	1	0.0672	TRUE	0	8	0	2	8	TRUE	ACH-000873
KYSE270_OESOPHAGUS	FAM49B--ASAP1	1	12	FAM49B	5614	chr8:130951854:-	ASAP1	68548	chr8:131073315:-	ONLY_REF_SPLICE	YES	130	30	0.09	0.3	0.0134	0.1613	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[34978],FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-	KYSE270_OESOPHAGUS	0.09	0.3	0.1747	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	INPP4A--TRIP13	4	0	INPP4A	1232	chr2:99061548:+	TRIP13	52154	chr5:914580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	INPP4A->chr2:99061317-99210853:+,inositol_polyphosphate-4-phosphatase_type_I_A,TRIP13->chr5:892758-919472:+,thyroid_hormone_receptor_interactor_13	KYSE270_OESOPHAGUS	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	UQCC1--FER1L4	4	0	UQCC1	1202	chr20:33999743:-	FER1L4	49805	chr20:34147394:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,FER1L4->chr20:34146507-34195484:-,fer-1_like_family_member_4,_pseudogene	KYSE270_OESOPHAGUS	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PCBP3--AP001048.4	3	2	PCBP3	16041	chr21:47270009:+	AP001048.4	40350	chr21:44886938:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0403	0.0269	PCBP3->chr21:47063608-47362368:+,poly(rC)_binding_protein_3,AP001048.4->chr21:44885189-44887178:+	KYSE270_OESOPHAGUS	0.83	1	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	AMBRA1--CKAP5	3	1	AMBRA1	13434	chr11:46529741:-	CKAP5	56531	chr11:46792532:-	ONLY_REF_SPLICE	YES	16	60	0.2	0.06	0.0403	0.0134	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5	KYSE270_OESOPHAGUS	0.06	0.2	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	APOLD1--CREBL2	1	9	APOLD1	1457	chr12:12879307:+	CREBL2	24756	chr12:12788711:+	ONLY_REF_SPLICE	YES	4	16	0.71	0.38	0.0134	0.121	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[80809],APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+	KYSE270_OESOPHAGUS	0.38	0.71	0.1344	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	SMPD4P1--VWA9	3	1	SMPD4P1	1051	chr22:21011151:-	VWA9	29262	chr15:65885910:-	ONLY_REF_SPLICE	YES	0	38	1	0.1	0.0403	0.0134	SMPD4P1->chr22:20956882-21011201:-,sphingomyelin_phosphodiesterase_4_pseudogene_1,VWA9->chr15:65871091-65903627:-,von_Willebrand_factor_A_domain_containing_9	KYSE270_OESOPHAGUS	0.1	1	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	FHOD3--GALNT1	2	4	FHOD3	2394	chr18:33935608:+	GALNT1	56197	chr18:33289588:+	ONLY_REF_SPLICE	YES	12	149	0.33	0.04	0.0269	0.0538	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1	KYSE270_OESOPHAGUS	0.04	0.33	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PACS1--OVOL1	2	4	PACS1	13556	chr11:65988262:+	OVOL1	35564	chr11:65561502:+	ONLY_REF_SPLICE	YES	44	18	0.12	0.25	0.0269	0.0538	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,OVOL1->chr11:65554493-65564690:+,ovo_like_zinc_finger_1	KYSE270_OESOPHAGUS	0.12	0.25	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	CTD-3105H18.16--ATP13A5	2	3	CTD-3105H18.16	1171	chr19:12551726:-	ATP13A5	8894	chr3:193082069:-	ONLY_REF_SPLICE	YES	1	8	0.83	0.38	0.0269	0.0403	CTD-3105H18.16->chr19:12502763-12551896:-,ATP13A5->ATPase_13A5,chr3:192992579-193096632:-	KYSE270_OESOPHAGUS	0.38	0.83	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	SVIL--BTRC	2	3	SVIL	23475	chr10:29811339:-	BTRC	60613	chr10:103285770:+	ONLY_REF_SPLICE	YES	49	9	0.09	0.36	0.0269	0.0403	SVIL->chr10:29746267-30025710:-,supervillin,BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+	KYSE270_OESOPHAGUS	0.09	0.36	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	TVP23C--CDRT1	2	2	TVP23C	14926	chr17:15406412:-	CDRT1	35280	chr17:15469667:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0269	0.0269	LOCAL_INVERSION:-:-,chr17:[1888],TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),CDRT1->CMT1A_duplicated_region_transcript_1,chr17:15468797-15469590:-,chr17:15468798-15522826:-	KYSE270_OESOPHAGUS	0.18	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	C19orf44--CACNA1A	2	1	C19orf44	8169	chr19:16620799:+	CACNA1A	40141	chr19:13411470:-	ONLY_REF_SPLICE	YES	2	1	0.6	0.75	0.0269	0.0134	C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	KYSE270_OESOPHAGUS	0.6	0.75	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	FARP2--ANO7	2	1	FARP2	2877	chr2:242312705:+	ANO7	53669	chr2:242141609:+	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0269	0.0134	FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,ANO7->anoctamin_7,chr2:242127924-242164792:+	KYSE270_OESOPHAGUS	0.17	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	LINC00511--SLC39A11	2	1	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	36	11	0.08	0.21	0.0269	0.0134	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	KYSE270_OESOPHAGUS	0.08	0.21	0.0403	TRUE	0	5	0	7	4	TRUE	ACH-000873
KYSE270_OESOPHAGUS	AGO2--PTK2	2	0	AGO2	21292	chr8:141545567:-	PTK2	71506	chr8:141716304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[22281],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	BAZ2A--PTGES3	2	0	BAZ2A	1635	chr12:57029966:-	PTGES3	32210	chr12:57060050:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:-:[26527],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	C1orf21--C20orf203	2	0	C1orf21	1311	chr1:184356502:+	C20orf203	27160	chr20:31239783:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	C1orf21->chr1:184356192-184598154:+,chromosome_1_open_reading_frame_21,C20orf203->chr20:31219428-31261743:-,chromosome_20_open_reading_frame_203	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	CNBP--RUVBL1	2	0	CNBP	1147	chr3:128902619:-	RUVBL1	18114	chr3:127806651:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	CNBP->CCHC-type_zinc_finger_nucleic_acid_binding_protein,chr3:128888327-128902765:-,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	NBAS--SYVN1	2	0	NBAS	21960	chr2:15601325:-	SYVN1	66072	chr11:64898844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,SYVN1->chr11:64889252-64902004:-,synoviolin_1	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PTPRA--TMC2	2	0	PTPRA	3475	chr20:2854406:+	TMC2	40252	chr20:2582759:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,TMC2->chr20:2517253-2622430:+,transmembrane_channel_like_2	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PTPRA--TMC2	2	0	PTPRA	3475	chr20:2854406:+	TMC2	41441	chr20:2591065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,TMC2->chr20:2517253-2622430:+,transmembrane_channel_like_2	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	RCC1--LARP4	2	0	RCC1	2175	chr1:28834672:+	LARP4	36880	chr12:50854918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	1	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	TOX3--C9orf3	2	0	TOX3	6771	chr16:52497846:-	C9orf3	53744	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	TOX3->TOX_high_mobility_group_box_family_member_3,chr16:52471917-52581714:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	CTD-3105H18.16--ATP13A5	1	2	CTD-3105H18.16	1171	chr19:12551726:-	ATP13A5	9792	chr3:193081171:-	ONLY_REF_SPLICE	NO	1	16	0.75	0.16	0.0134	0.0269	CTD-3105H18.16->chr19:12502763-12551896:-,ATP13A5->ATPase_13A5,chr3:192992579-193096632:-	KYSE270_OESOPHAGUS	0.16	0.75	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	TVP23C--CDRT1	1	2	TVP23C	12676	chr17:15419733:-	CDRT1	35280	chr17:15469667:-	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0134	0.0269	LOCAL_INVERSION:-:-,chr17:[1888],TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),CDRT1->CMT1A_duplicated_region_transcript_1,chr17:15468797-15469590:-,chr17:15468798-15522826:-	KYSE270_OESOPHAGUS	0.14	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PTPRA--TMC2	1	1	PTPRA	3475	chr20:2854406:+	TMC2	37961	chr20:2575471:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0134	0.0134	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,TMC2->chr20:2517253-2622430:+,transmembrane_channel_like_2	KYSE270_OESOPHAGUS	0.4	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000873
NCIH82_LUNG	PVT1--CASC8	322	348	PVT1	1202	chr8:128806980:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	336	27	0.67	0.96	4.3455	4.6964	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.67	0.96	9.0419	TRUE	0	2	0	5	2	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	327	268	PVT1	1202	chr8:128806980:+	MYH7	49555	chr14:23883102:-	ONLY_REF_SPLICE	YES	336	12	0.64	0.98	4.413	3.6168	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.64	0.98	8.0298	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	111	372	PVT1	1202	chr8:128806980:+	MYH7	49346	chr14:23883311:-	ONLY_REF_SPLICE	YES	336	0	0.59	1	1.498	5.0203	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.59	1	6.5183	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	SUPT6H--MYH10	152	30	SUPT6H	1252	chr17:26989360:+	MYH10	40576	chr17:8457336:-	ONLY_REF_SPLICE	YES	86	115	0.68	0.61	2.0513	0.4049	SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+,MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle	NCIH82_LUNG	0.61	0.68	2.4562	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--CASC8	51	363	PVT1	2457	chr8:128808254:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	78	27	0.84	0.94	0.6883	4.8988	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.84	0.94	5.5871	TRUE	0	1	0	4	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--CASC8	39	386	PVT1	1202	chr8:128806980:+	CASC8	34291	chr8:128433208:-	ONLY_REF_SPLICE	YES	336	2	0.56	1	0.5263	5.2092	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.56	1	5.7355	TRUE	0	1	0	2	1	TRUE	ACH-000355
NCIH82_LUNG	PVT1--CASC8	37	372	PVT1	2520	chr8:128808317:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	57	27	0.88	0.94	0.4993	5.0203	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.88	0.94	5.5196	TRUE	0	1	0	4	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	27	397	PVT1	2520	chr8:128808317:+	MYH7	49346	chr14:23883311:-	ONLY_REF_SPLICE	YES	57	0	0.88	1	0.3644	5.3577	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.88	1	5.7221	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	22	390	PVT1	2457	chr8:128808254:+	MYH7	49346	chr14:23883311:-	ONLY_REF_SPLICE	YES	78	0	0.84	1	0.2969	5.2632	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.84	1	5.5601	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--CASC8	1	411	PVT1	2520	chr8:128808317:+	CASC8	34291	chr8:128433208:-	ONLY_REF_SPLICE	NO	57	2	0.88	1	0.0135	5.5466	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.88	1	5.5601	TRUE	0	1	0	1	1	TRUE	ACH-000355
NCIH82_LUNG	PVT1--CASC8	1	402	PVT1	2457	chr8:128808254:+	CASC8	34291	chr8:128433208:-	ONLY_REF_SPLICE	YES	78	2	0.84	1	0.0135	5.4251	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.84	1	5.4386	TRUE	0	1	0	1	1	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	1	397	PVT1	3930	chr8:128815805:+	MYH7	49346	chr14:23883311:-	ONLY_REF_SPLICE	YES	57	0	0.87	1	0.0135	5.3577	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.87	1	5.3712	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	7	373	PVT1	1202	chr8:128806980:+	MYH7	49338	chr14:23883319:-	INCL_NON_REF_SPLICE	YES	336	0	0.53	1	0.0945	5.0338	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.53	1	5.1283	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--CASC8	3	354	PVT1	1202	chr8:128806980:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	336	14	0.52	0.96	0.0405	4.7774	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.52	0.96	4.8179	TRUE	0	0	0	5	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	20	278	PVT1	2457	chr8:128808254:+	MYH7	49555	chr14:23883102:-	ONLY_REF_SPLICE	YES	78	12	0.79	0.96	0.2699	3.7517	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.79	0.96	4.0216	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	5	282	PVT1	2520	chr8:128808317:+	MYH7	49555	chr14:23883102:-	ONLY_REF_SPLICE	YES	57	12	0.83	0.96	0.0675	3.8057	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.83	0.96	3.8732	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PSEN1--CASC11	63	33	PSEN1	12660	chr14:73640415:+	CASC11	30138	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	101	0	0.49	1	0.8502	0.4453	PSEN1->chr14:73603126-73690399:+,presenilin_1,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NCIH82_LUNG	0.49	1	1.2955	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	LTBP2--CASC8	53	25	LTBP2	3224	chr14:75070338:-	CASC8	45038	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	27	1	0.74	0.7153	0.3374	LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.74	1	1.0527	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RBM25--PAPLN	44	45	RBM25	1270	chr14:73525413:+	PAPLN	50403	chr14:73739203:+	ONLY_REF_SPLICE	YES	164	32	0.35	0.74	0.5938	0.6073	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	NCIH82_LUNG	0.35	0.74	1.2011	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RP4-647C14.3--RP11-109N23.4	44	44	RP4-647C14.3	2557	chr14:73739203:-	RP11-109N23.4	6581	chr14:73525413:-	INCL_NON_REF_SPLICE	YES	7	1	0.93	0.99	0.5938	0.5938	RP4-647C14.3->chr14:73738890-73740789:-,RP11-109N23.4->chr14:73525139-73526123:-	NCIH82_LUNG	0.93	0.99	1.1876	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	SLC22A17--CASC11	45	26	SLC22A17	7001	chr14:23815965:-	CASC11	11595	chr8:128743168:-	INCL_NON_REF_SPLICE	YES	118	13	0.38	0.85	0.6073	0.3509	SLC22A17->chr14:23815515-23822121:-,solute_carrier_family_22_member_17,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NCIH82_LUNG	0.38	0.85	0.9582	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RBM25--PAPLN	28	63	RBM25	1270	chr14:73525413:+	PAPLN	49189	chr14:73735218:+	INCL_NON_REF_SPLICE	YES	164	17	0.36	0.84	0.3779	0.8502	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	NCIH82_LUNG	0.36	0.84	1.2281	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	TPD52L1--PARVA	35	33	TPD52L1	2662	chr6:125475116:+	PARVA	31386	chr11:12518005:+	ONLY_REF_SPLICE	YES	325	59	0.17	0.54	0.4723	0.4453	{Klijn_CCL:Lung=1},TPD52L1->chr6:125440195-125585553:+,tumor_protein_D52-like_1,PARVA->chr11:12398732-12552348:+,parvin_alpha	NCIH82_LUNG	0.17	0.54	0.9176	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PAPLN--PSEN1	38	19	PAPLN	24088	chr14:73741167:+	PSEN1	32459	chr14:73614503:+	INCL_NON_REF_SPLICE	YES	10	47	0.85	0.55	0.5128	0.2564	LOCAL_REARRANGEMENT:+:[13806],PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein,PSEN1->chr14:73603126-73690399:+,presenilin_1	NCIH82_LUNG	0.55	0.85	0.7692	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	DACH2--HDAC8	34	22	DACH2	1651	chrX:85404112:+	HDAC8	40354	chrX:71571688:-	ONLY_REF_SPLICE	YES	75	38	0.43	0.6	0.4588	0.2969	DACH2->Oncogene{Bushman},chrX:85403462-86087607:+,dachshund_family_transcription_factor_2,HDAC8->chrX:71549366-71792953:-,histone_deacetylase_8	NCIH82_LUNG	0.43	0.6	0.7557	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PPP4R1--AP005530.2	27	18	PPP4R1	2015	chr18:9614224:-	AP005530.2	29664	chr18:16898:-	ONLY_REF_SPLICE	YES	22	0	0.67	1	0.3644	0.2429	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,AP005530.2->chr18:14195-16898:-	NCIH82_LUNG	0.67	1	0.6073	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RBM25--PAPLN	9	58	RBM25	1270	chr14:73525413:+	PAPLN	49236	chr14:73735265:+	ONLY_REF_SPLICE	YES	164	17	0.29	0.8	0.1215	0.7827	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	NCIH82_LUNG	0.29	0.8	0.9042	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	MTX2--AC017048.4	16	4	MTX2	4061	chr2:177162623:+	AC017048.4	16379	chr2:177504219:+	ONLY_REF_SPLICE	YES	92	0	0.18	1	0.2159	0.054	MTX2->chr2:177134123-177202753:+,metaxin_2,AC017048.4->chr2:177502438-177520686:+	NCIH82_LUNG	0.18	1	0.2699	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RBM25--PAPLN	1	58	RBM25	1376	chr14:73525519:+	PAPLN	49236	chr14:73735265:+	ONLY_REF_SPLICE	YES	175	17	0.25	0.78	0.0135	0.7827	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	NCIH82_LUNG	0.25	0.78	0.7962	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	SLC35F4--RP11-382A18.2	12	9	SLC35F4	3829	chr14:58332441:-	RP11-382A18.2	22846	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	10	0	0.68	1	0.1619	0.1215	SLC35F4->chr14:58030640-58448912:-,solute_carrier_family_35_member_F4,RP11-382A18.2->chr8:128351519-128404876:+	NCIH82_LUNG	0.68	1	0.2834	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	SLC22A17--CASC11	11	10	SLC22A17	6656	chr14:23816310:-	CASC11	11595	chr8:128743168:-	ONLY_REF_SPLICE	YES	165	13	0.11	0.62	0.1484	0.135	SLC22A17->chr14:23815515-23822121:-,solute_carrier_family_22_member_17,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NCIH82_LUNG	0.11	0.62	0.2834	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	UBR1--EPB42	9	0	UBR1	1172	chr15:43398140:-	EPB42	73129	chr15:43423340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1215	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:-:[112],UBR1->chr15:43235095-43398311:-,ubiquitin_protein_ligase_E3_component_n-recognin_1,EPB42->chr15:43398423-43513481:-,erythrocyte_membrane_protein_band_4.2	NCIH82_LUNG	1	1	0.1215	TRUE	0	1	0	1	1	TRUE	ACH-000355
NCIH82_LUNG	USP14--RP11-78F17.1	8	1	USP14	13593	chr18:204692:+	RP11-78F17.1	25973	chr18:1133844:+	ONLY_REF_SPLICE	YES	238	1	0.04	0.9	0.108	0.0135	USP14->chr18:158383-214629:+,ubiquitin_specific_peptidase_14,RP11-78F17.1->chr18:976590-1174824:+	NCIH82_LUNG	0.04	0.9	0.1215	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PPM1E--TRIM37	5	1	PPM1E	6895	chr17:57050286:+	TRIM37	43743	chr17:57060282:-	ONLY_REF_SPLICE	YES	51	2	0.11	0.75	0.0675	0.0135	LOCAL_INVERSION:+:-:[1016],PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E,TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37	NCIH82_LUNG	0.11	0.75	0.081	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	TSEN34--ZFP14	5	1	TSEN34	1513	chr19:54694301:+	ZFP14	11055	chr19:36851435:-	ONLY_REF_SPLICE	YES	15	9	0.29	0.4	0.0675	0.0135	TSEN34->chr19:54693789-54697585:+,tRNA_splicing_endonuclease_subunit_34,ZFP14->ZFP14_zinc_finger_protein,chr19:36827162-36870101:-	NCIH82_LUNG	0.29	0.4	0.081	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	SLC7A8--TRAV6	5	0	SLC7A8	1911	chr14:23651973:-	TRAV6	22404	chr14:22237033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0675	0	SLC7A8->chr14:23594504-23652883:-,solute_carrier_family_7_member_8,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+	NCIH82_LUNG	1	1	0.0675	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PPP4R1--AP005530.2	1	15	PPP4R1	2015	chr18:9614224:-	AP005530.2	31012	chr18:14653:-	ONLY_REF_SPLICE	YES	22	0	0.42	1	0.0135	0.2024	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,AP005530.2->chr18:14195-16898:-	NCIH82_LUNG	0.42	1	0.2159	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	ASH1L--QSER1	3	4	ASH1L	33742	chr1:155307880:-	QSER1	48566	chr11:32975403:+	ONLY_REF_SPLICE	YES	56	44	0.11	0.14	0.0405	0.054	{Klijn_CCL:Lung=1},ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1	NCIH82_LUNG	0.11	0.14	0.0945	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	MACROD1--GNAS	4	0	MACROD1	3565	chr11:63918711:-	GNAS	29718	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH82_LUNG	1	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RBM10--SLC38A5	4	0	RBM10	2759	chrX:47006897:+	SLC38A5	20728	chrX:48326312:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	RBM10->ArcherDX_panel,FoundationOne_panel,RNA_binding_motif_protein_10,chrX:47004268-47046212:+,SLC38A5->chrX:48316920-48328644:-,solute_carrier_family_38_member_5	NCIH82_LUNG	1	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RCC1--GNAS	4	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH82_LUNG	1	1	0.054	TRUE	0	3	0	13	2	TRUE	ACH-000355
NCIH82_LUNG	TPD52L1--PARVA	1	12	TPD52L1	2662	chr6:125475116:+	PARVA	32527	chr11:12525861:+	ONLY_REF_SPLICE	NO	325	57	0.04	0.19	0.0135	0.1619	{Klijn_CCL:Lung=1},TPD52L1->chr6:125440195-125585553:+,tumor_protein_D52-like_1,PARVA->chr11:12398732-12552348:+,parvin_alpha	NCIH82_LUNG	0.04	0.19	0.1754	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	NDUFV2--RP11-190I17.2	3	1	NDUFV2	1168	chr18:9102795:+	RP11-190I17.2	14939	chr18:5163680:+	ONLY_REF_SPLICE	YES	61	0	0.06	1	0.0405	0.0135	NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+,RP11-190I17.2->chr18:5159331-5171025:+	NCIH82_LUNG	0.06	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	TSEN34--ZFP14	2	1	TSEN34	1513	chr19:54694301:+	ZFP14	11052	chr19:36851438:-	ONLY_REF_SPLICE	YES	15	9	0.17	0.25	0.027	0.0135	TSEN34->chr19:54693789-54697585:+,tRNA_splicing_endonuclease_subunit_34,ZFP14->ZFP14_zinc_finger_protein,chr19:36827162-36870101:-	NCIH82_LUNG	0.17	0.25	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	AC074363.1--B3GALT1	1	4	AC074363.1	2265	chr2:168346787:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0135	0.054	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	NCIH82_LUNG	1	1	0.0675	TRUE	0	4	2	6	4	TRUE	ACH-000355
NCIH82_LUNG	ADSS--SDCCAG8	2	0	ADSS	1500	chr1:244614937:-	SDCCAG8	20774	chr1:243433394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	ATG13--AMBRA1	2	0	ATG13	1615	chr11:46639440:+	AMBRA1	55718	chr11:46419493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	LOCAL_INVERSION:+:-:[23151],ATG13->autophagy_related_13,chr11:46638826-46696368:+,AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	C17orf76-AS1--NCL	2	0	C17orf76-AS1	1593	chr17:16342728:+	NCL	23593	chr2:232320847:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	C17orf76-AS1->chr17:16342136-16381992:+,NCL->chr2:232318242-232348352:-,nucleolin	NCIH82_LUNG	1	1	0.027	TRUE	0	1	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	DMGDH--NAA35	2	0	DMGDH	1228	chr5:78531634:-	NAA35	31112	chr9:88557070:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	DMGDH->chr5:78293438-78531861:-,dimethylglycine_dehydrogenase,NAA35->N(alpha)-acetyltransferase_35,_NatC_auxiliary_subunit,chr9:88556061-88637213:+	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	EIF4A2--PRICKLE2	2	0	EIF4A2	5380	chr3:186505373:+	PRICKLE2	19958	chr3:64139044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	12	0	TRUE	ACH-000355
NCIH82_LUNG	EMC2--EIF3E	2	0	EMC2	14565	chr8:109491339:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	2	0	TRUE	ACH-000355
NCIH82_LUNG	INTS2--MED13	2	0	INTS2	4907	chr17:59999086:-	MED13	40978	chr17:60088594:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	LOCAL_REARRANGEMENT:-:[14589],INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2,MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	MGST1--SRP9	2	0	MGST1	5873	chr12:16507204:+	SRP9	24605	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PREP--TNFRSF19	2	0	PREP	8016	chr6:105800847:-	TNFRSF19	35624	chr13:24247511:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	PREP->chr6:105725440-105850959:-,prolyl_endopeptidase,TNFRSF19->chr13:24144509-24250232:+,tumor_necrosis_factor_receptor_superfamily_member_19	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RCC1--EEF1D	2	0	RCC1	2920	chr1:28835417:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH82_LUNG	1	1	0.027	TRUE	1	10	0	18	0	TRUE	ACH-000355
NCIH82_LUNG	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH82_LUNG	1	1	0.027	TRUE	1	10	0	18	0	TRUE	ACH-000355
NCIH82_LUNG	RP4-622L5.7--ABCA4	2	0	RP4-622L5.7	1700	chr1:32671716:-	ABCA4	54981	chr1:94466661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	RP4-622L5.7->chr1:32670370-32672415:-,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	TSEN34--ZFP14	2	0	TSEN34	1434	chr19:54694222:+	ZFP14	11052	chr19:36851438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	TSEN34->chr19:54693789-54697585:+,tRNA_splicing_endonuclease_subunit_34,ZFP14->ZFP14_zinc_finger_protein,chr19:36827162-36870101:-	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
BICR16_UPPER_AERODIGESTIVE_TRACT	KDM4B--UHRF1	93	40	KDM4B	2200	chr19:5016350:+	UHRF1	38758	chr19:4910888:+	ONLY_REF_SPLICE	YES	24	64	0.85	0.68	0.7461	0.3209	YOSHIHARA_TCGA_num_samples[BRCA:2],LOCAL_REARRANGEMENT:+:[6960],KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	BICR16_UPPER_AERODIGESTIVE_TRACT	0.68	0.85	1.067	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	PRRC2B--PKP2	89	25	PRRC2B	5695	chr9:134314448:+	PKP2	51382	chr12:32977096:-	ONLY_REF_SPLICE	YES	96	26	0.54	0.81	0.7141	0.2006	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,PKP2->chr12:32943679-33049774:-,plakophilin_2	BICR16_UPPER_AERODIGESTIVE_TRACT	0.54	0.81	0.9147	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ZFAND3--CMTR1	78	25	ZFAND3	1518	chr6:37787792:+	CMTR1	30527	chr6:37438797:+	ONLY_REF_SPLICE	YES	28	46	0.79	0.69	0.6258	0.2006	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,CMTR1->cap_methyltransferase_1,chr6:37400995-37450603:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.69	0.79	0.8264	TRUE	0	1	0	1	1	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RSRC1--MFSD1	34	14	RSRC1	15892	chr3:158178792:+	MFSD1	30521	chr3:158522108:+	ONLY_REF_SPLICE	YES	39	108	0.55	0.31	0.2728	0.1123	RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MFSD1->chr3:158449987-158547508:+,major_facilitator_superfamily_domain_containing_1	BICR16_UPPER_AERODIGESTIVE_TRACT	0.31	0.55	0.3851	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	PAIP2--CTB-35F21.1	32	0	PAIP2	1394	chr5:138677669:+	CTB-35F21.1	11926	chr5:139101488:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2567	0	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,CTB-35F21.1->chr5:139064230-139124595:+	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.2567	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MFSD1--DGKG	17	4	MFSD1	10596	chr3:158527076:+	DGKG	50414	chr3:185906168:-	ONLY_REF_SPLICE	YES	76	7	0.22	0.75	0.1364	0.0321	MFSD1->chr3:158449987-158547508:+,major_facilitator_superfamily_domain_containing_1,DGKG->chr3:185823457-186080026:-,diacylglycerol_kinase_gamma	BICR16_UPPER_AERODIGESTIVE_TRACT	0.22	0.75	0.1685	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	PAIP2--PSD2	7	23	PAIP2	1394	chr5:138677669:+	PSD2	11293	chr5:139188976:+	ONLY_REF_SPLICE	YES	45	0	0.4	1	0.0562	0.1845	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,PSD2->chr5:139175406-139224051:+,pleckstrin_and_Sec7_domain_containing_2	BICR16_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.2407	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	KDM4B--UHRF1	6	11	KDM4B	2200	chr19:5016350:+	UHRF1	39921	chr19:4929234:+	ONLY_REF_SPLICE	YES	24	69	0.41	0.2	0.0481	0.0883	YOSHIHARA_TCGA_num_samples[BRCA:2],LOCAL_REARRANGEMENT:+:[6960],KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	BICR16_UPPER_AERODIGESTIVE_TRACT	0.2	0.41	0.1364	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MLLT10--ACBD5	7	2	MLLT10	2720	chr10:21827841:+	ACBD5	40571	chr10:27520749:-	ONLY_REF_SPLICE	YES	26	28	0.26	0.24	0.0562	0.016	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,ACBD5->acyl-CoA_binding_domain_containing_5,chr10:27484146-27531059:-	BICR16_UPPER_AERODIGESTIVE_TRACT	0.24	0.26	0.0722	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	FAM227A--RP3-508I15.9	6	4	FAM227A	10957	chr22:39022198:-	RP3-508I15.9	38041	chr22:39064137:-	INCL_NON_REF_SPLICE	YES	0	37	1	0.21	0.0481	0.0321	LOCAL_REARRANGEMENT:-:[10956],FAM227A->chr22:38974125-39052634:-,family_with_sequence_similarity_227_member_A,RP3-508I15.9->chr22:39063590-39077825:-	BICR16_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.0802	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	PLCB1--IL20RB	7	0	PLCB1	3721	chr20:8352097:+	IL20RB	62242	chr3:136728955:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0562	0	PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1,IL20RB->chr3:136665072-136729927:+,interleukin_20_receptor_subunit_beta	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	NIPBL--NUP155	6	1	NIPBL	1420	chr5:36877280:+	NUP155	80894	chr5:37305312:-	ONLY_REF_SPLICE	YES	16	81	0.3	0.08	0.0481	0.008	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,NUP155->chr5:37288239-37371283:-,nucleoporin_155kDa	BICR16_UPPER_AERODIGESTIVE_TRACT	0.08	0.3	0.0561	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	DGKG--RGS7	4	2	DGKG	24575	chr3:185929584:-	RGS7	46743	chr1:241262062:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0321	0.016	DGKG->chr3:185823457-186080026:-,diacylglycerol_kinase_gamma,RGS7->chr1:240931554-241520530:-,regulator_of_G-protein_signaling_7	BICR16_UPPER_AERODIGESTIVE_TRACT	0.46	1	0.0481	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	FAM227A--RP3-508I15.9	4	2	FAM227A	10941	chr22:39022214:-	RP3-508I15.9	38041	chr22:39064137:-	INCL_NON_REF_SPLICE	YES	0	37	1	0.14	0.0321	0.016	LOCAL_REARRANGEMENT:-:[10956],FAM227A->chr22:38974125-39052634:-,family_with_sequence_similarity_227_member_A,RP3-508I15.9->chr22:39063590-39077825:-	BICR16_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.0481	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ECI1--TMEM204	3	0	ECI1	3113	chr16:2296860:-	TMEM204	15251	chr16:1604783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	ECI1->chr16:2289396-2302301:-,enoyl-CoA_delta_isomerase_1,TMEM204->chr16:1578689-1605581:+,transmembrane_protein_204	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	PTPN1--CDH4	3	0	PTPN1	1237	chr20:49127127:+	CDH4	18910	chr20:60318619:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1,CDH4->cadherin_4,chr20:59827482-60515673:+	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	APOLD1--CNOT1	2	0	APOLD1	1457	chr12:12879307:+	CNOT1	40116	chr16:58592578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	EFNB2--ARGLU1	2	0	EFNB2	1272	chr13:107187191:-	ARGLU1	14927	chr13:107212005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[6559],EFNB2->chr13:107142079-107187462:-,ephrin_B2,ARGLU1->arginine_and_glutamate_rich_1,chr13:107194021-107220512:-	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	TRUE	1	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MBD2--RPS27A	2	0	MBD2	10258	chr18:51686135:-	RPS27A	17774	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MIB1--CD27-AS1	2	0	MIB1	25475	chr18:19438607:+	CD27-AS1	38163	chr12:6557923:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,CD27-AS1->CD27_antisense_RNA_1,chr12:6548167-6560733:-	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	SLC25A36--C9orf3	2	0	SLC25A36	5624	chr3:140682069:+	C9orf3	56869	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	EFCAB11--AC003665.1	1	1	EFCAB11	7383	chr14:90397885:-	AC003665.1	26011	chr17:45995937:-	ONLY_REF_SPLICE	NO	40	0	0.05	1	0.008	0.008	EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,AC003665.1->chr17:45974696-46018776:-	BICR16_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000503
TE11_OESOPHAGUS	FHOD3--MOCOS	147	43	FHOD3	5633	chr18:34092506:+	MOCOS	53610	chr18:33836931:+	ONLY_REF_SPLICE	YES	12	28	0.94	0.87	1.5283	0.4471	LOCAL_REARRANGEMENT:+:[25557],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	TE11_OESOPHAGUS	0.87	0.94	1.9754	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	NHSL1--MAP7	85	43	NHSL1	11203	chr6:138768138:-	MAP7	28659	chr6:136742937:-	ONLY_REF_SPLICE	YES	13	5	0.91	0.96	0.8837	0.4471	NHSL1->NHS_like_1,chr6:138743180-139013708:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	TE11_OESOPHAGUS	0.91	0.96	1.3308	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	SUN1--FAM133B	77	31	SUN1	26402	chr7:912199:+	FAM133B	48151	chr7:92199229:-	ONLY_REF_SPLICE	YES	188	99	0.36	0.52	0.8006	0.3223	SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B	TE11_OESOPHAGUS	0.36	0.52	1.1229	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	FANCI--RNF135	63	54	FANCI	25566	chr15:89838325:+	RNF135	47704	chr17:29324260:+	ONLY_REF_SPLICE	YES	145	20	0.45	0.85	0.655	0.5614	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	TE11_OESOPHAGUS	0.45	0.85	1.2164	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	B3GNTL1--OGFOD3	48	20	B3GNTL1	6043	chr17:80972330:-	OGFOD3	37219	chr17:80350410:-	ONLY_REF_SPLICE	YES	3	35	0.96	0.66	0.499	0.2079	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	TE11_OESOPHAGUS	0.66	0.96	0.7069	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	ACTN4--RYR1	43	8	ACTN4	10448	chr19:39205201:+	RYR1	95231	chr19:39051753:+	ONLY_REF_SPLICE	YES	612	0	0.08	1	0.4471	0.0832	LOCAL_REARRANGEMENT:+:[60085],ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	TE11_OESOPHAGUS	0.08	1	0.5303	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	NHSL1--MAP7	16	55	NHSL1	12546	chr6:138763120:-	MAP7	28659	chr6:136742937:-	ONLY_REF_SPLICE	YES	10	5	0.88	0.93	0.1663	0.5718	NHSL1->NHS_like_1,chr6:138743180-139013708:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	TE11_OESOPHAGUS	0.88	0.93	0.7381	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	NF1--INA	23	15	NF1	1443	chr17:29422387:+	INA	79729	chr10:105046792:+	ONLY_REF_SPLICE	YES	23	2	0.62	0.95	0.2391	0.156	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,INA->chr10:105036920-105050108:+,internexin_neuronal_intermediate_filament_protein_alpha	TE11_OESOPHAGUS	0.62	0.95	0.3951	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	FANCI--RNF135	11	56	FANCI	25566	chr15:89838325:+	RNF135	46639	chr17:29320858:+	ONLY_REF_SPLICE	YES	145	24	0.32	0.74	0.1144	0.5822	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	TE11_OESOPHAGUS	0.32	0.74	0.6966	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	19	11	RPS6KB1	9551	chr17:58007535:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	48	186	0.38	0.14	0.1975	0.1144	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.14	0.38	0.3119	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	FANCI--RNF135	13	10	FANCI	23535	chr15:89836294:+	RNF135	47704	chr17:29324260:+	ONLY_REF_SPLICE	YES	168	20	0.12	0.53	0.1352	0.104	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	TE11_OESOPHAGUS	0.12	0.53	0.2392	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	10	12	RPS6KB1	11099	chr17:58009083:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	38	186	0.37	0.11	0.104	0.1248	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.11	0.37	0.2288	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	FANCI--RNF135	8	18	FANCI	24469	chr15:89837228:+	RNF135	47704	chr17:29324260:+	ONLY_REF_SPLICE	YES	176	20	0.13	0.57	0.0832	0.1871	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	TE11_OESOPHAGUS	0.13	0.57	0.2703	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	SUN1--FAM133B	3	32	SUN1	27682	chr7:913479:+	FAM133B	48151	chr7:92199229:-	INCL_NON_REF_SPLICE	YES	225	99	0.13	0.26	0.0312	0.3327	SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B	TE11_OESOPHAGUS	0.13	0.26	0.3639	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MPZL1--POU2F1	9	4	MPZL1	2051	chr1:167691479:+	POU2F1	42394	chr1:167381196:+	ONLY_REF_SPLICE	YES	236	15	0.05	0.46	0.0936	0.0416	MPZL1->chr1:167690429-167761156:+,myelin_protein_zero_like_1,POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+	TE11_OESOPHAGUS	0.05	0.46	0.1352	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	FANCI--RNF135	3	18	FANCI	24469	chr15:89837228:+	RNF135	46639	chr17:29320858:+	ONLY_REF_SPLICE	YES	176	24	0.11	0.47	0.0312	0.1871	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	TE11_OESOPHAGUS	0.11	0.47	0.2183	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	7	2	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	92	186	0.09	0.05	0.0728	0.0208	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.05	0.09	0.0936	TRUE	0	9	0	10	6	TRUE	ACH-000488
TE11_OESOPHAGUS	WDR59--LDHD	7	2	WDR59	31017	chr16:74923601:-	LDHD	41996	chr16:75148063:-	ONLY_REF_SPLICE	YES	59	6	0.13	0.6	0.0728	0.0208	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,LDHD->chr16:75145758-75150669:-,lactate_dehydrogenase_D	TE11_OESOPHAGUS	0.13	0.6	0.0936	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	BCAM--PPARD	7	0	BCAM	1136	chr19:45312463:+	PPARD	19397	chr6:35391723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0728	0	BCAM->basal_cell_adhesion_molecule_(Lutheran_blood_group),chr19:45312328-45324673:+,PPARD->Oncogene{Bushman},chr6:35310335-35395968:+,peroxisome_proliferator_activated_receptor_delta	TE11_OESOPHAGUS	1	1	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	B3GNTL1--OGFOD3	1	20	B3GNTL1	6043	chr17:80972330:-	OGFOD3	35210	chr17:80352419:-	ONLY_REF_SPLICE	YES	3	38	0.88	0.36	0.0104	0.2079	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	TE11_OESOPHAGUS	0.36	0.88	0.2183	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MTR--CDC73	5	3	MTR	3733	chr1:236969533:+	CDC73	60011	chr1:193202123:+	ONLY_REF_SPLICE	YES	19	89	0.3	0.08	0.052	0.0312	MTR->5-methyltetrahydrofolate-homocysteine_methyltransferase,chr1:236958610-237067281:+,CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+	TE11_OESOPHAGUS	0.08	0.3	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	B3GNTL1--OGFOD3	3	10	B3GNTL1	3835	chr17:80992911:-	OGFOD3	37219	chr17:80350410:-	ONLY_REF_SPLICE	YES	3	35	0.81	0.27	0.0312	0.104	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	TE11_OESOPHAGUS	0.27	0.81	0.1352	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	C6orf136--ATAT1	5	1	C6orf136	1808	chr6:30615623:+	ATAT1	11873	chr6:30608154:+	ONLY_REF_SPLICE	YES	66	22	0.08	0.21	0.052	0.0104	LOCAL_REARRANGEMENT:+:[216],C6orf136->chr6:30614816-30620987:+,chromosome_6_open_reading_frame_136,ATAT1->alpha_tubulin_acetyltransferase_1,chr6:30594619-30614600:+	TE11_OESOPHAGUS	0.08	0.21	0.0624	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	KLF3--TBC1D1	5	1	KLF3	2362	chr4:38682303:+	TBC1D1	27595	chr4:38037209:+	ONLY_REF_SPLICE	YES	40	35	0.13	0.15	0.052	0.0104	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Amygdala=1},KLF3->Kruppel-like_factor_3_(basic),Oncogene{Bushman},chr4:38665817-38702663:+,TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+	TE11_OESOPHAGUS	0.13	0.15	0.0624	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	2	11	RPS6KB1	9809	chr17:58007793:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	50	186	0.21	0.07	0.0208	0.1144	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.07	0.21	0.1352	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MTR--CDC73	4	2	MTR	1428	chr1:236959037:+	CDC73	60011	chr1:193202123:+	ONLY_REF_SPLICE	YES	14	89	0.3	0.06	0.0416	0.0208	MTR->5-methyltetrahydrofolate-homocysteine_methyltransferase,chr1:236958610-237067281:+,CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+	TE11_OESOPHAGUS	0.06	0.3	0.0624	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	C6orf136--ATAT1	4	1	C6orf136	1265	chr6:30615080:+	ATAT1	11873	chr6:30608154:+	ONLY_REF_SPLICE	YES	47	22	0.1	0.19	0.0416	0.0104	LOCAL_REARRANGEMENT:+:[216],C6orf136->chr6:30614816-30620987:+,chromosome_6_open_reading_frame_136,ATAT1->alpha_tubulin_acetyltransferase_1,chr6:30594619-30614600:+	TE11_OESOPHAGUS	0.1	0.19	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	1	11	RPS6KB1	10429	chr17:58008413:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	53	186	0.18	0.06	0.0104	0.1144	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.06	0.18	0.1248	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	GOLGA3--GALNT9	3	2	GOLGA3	17616	chr12:133362925:-	GALNT9	35366	chr12:132863016:-	ONLY_REF_SPLICE	YES	70	0	0.07	1	0.0312	0.0208	GOLGA3->chr12:133345495-133405444:-,golgin_A3,GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9	TE11_OESOPHAGUS	0.07	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	WDR59--LDHD	3	2	WDR59	31017	chr16:74923601:-	LDHD	41927	chr16:75148132:-	ONLY_REF_SPLICE	YES	59	5	0.08	0.5	0.0312	0.0208	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,LDHD->chr16:75145758-75150669:-,lactate_dehydrogenase_D	TE11_OESOPHAGUS	0.08	0.5	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	FANCI--RNF135	2	5	FANCI	23336	chr15:89836095:+	RNF135	47704	chr17:29324260:+	ONLY_REF_SPLICE	YES	193	20	0.04	0.26	0.0208	0.052	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	TE11_OESOPHAGUS	0.04	0.26	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	FHOD3--MOCOS	2	5	FHOD3	5633	chr18:34092506:+	MOCOS	55855	chr18:33846712:+	ONLY_REF_SPLICE	YES	12	38	0.37	0.16	0.0208	0.052	LOCAL_REARRANGEMENT:+:[25557],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	TE11_OESOPHAGUS	0.16	0.37	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	FHOD3--MOCOS	1	9	FHOD3	3459	chr18:33952707:+	MOCOS	42631	chr18:33778653:+	ONLY_REF_SPLICE	YES	27	40	0.27	0.2	0.0104	0.0936	LOCAL_REARRANGEMENT:+:[25557],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	TE11_OESOPHAGUS	0.2	0.27	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	KRT5--HNRNPA2B1	3	0	KRT5	1686	chr12:52913786:-	HNRNPA2B1	16947	chr7:26233299:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	GTEx&tcga_normals:6/3694=0.16%,KRT5->chr12:52908359-52914471:-,keratin_5,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	TE11_OESOPHAGUS	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	RCC1--TBCA	3	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	TE11_OESOPHAGUS	1	1	0.0312	TRUE	0	3	0	7	0	TRUE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	1	7	RPS6KB1	11099	chr17:58009083:+	VMP1	36266	chr17:57889031:+	ONLY_REF_SPLICE	NO	38	141	0.17	0.05	0.0104	0.0728	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.05	0.17	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	BSG--PTBP1	2	0	BSG	2405	chr19:572701:+	PTBP1	16835	chr19:803561:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	2	0	TRUE	ACH-000488
TE11_OESOPHAGUS	HN1L--UBE2I	2	0	HN1L	1101	chr16:1728357:+	UBE2I	22624	chr16:1364021:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	2	0	TRUE	ACH-000488
TE11_OESOPHAGUS	HP1BP3--EIF4G3	2	0	HP1BP3	1129	chr1:21113688:-	EIF4G3	28440	chr1:21415706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	2	0	6	0	TRUE	ACH-000488
TE11_OESOPHAGUS	NEK6--GNAS	2	0	NEK6	1480	chr9:127020364:+	GNAS	38201	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	PAN2--TIMELESS	2	0	PAN2	6627	chr12:56719119:-	TIMELESS	27930	chr12:56816776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LOCAL_REARRANGEMENT:-:[83066],PAN2->PAN2_poly(A)_specific_ribonuclease_subunit,chr12:56710007-56727837:-,TIMELESS->chr12:56810903-56843187:-,timeless_circadian_clock	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	18	0	TRUE	ACH-000488
TE11_OESOPHAGUS	TJP1--PPP1CB	2	0	TJP1	3834	chr15:30114205:-	PPP1CB	47331	chr2:29006773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	TJP1->chr15:29991571-30261068:-,tight_junction_protein_1,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	VAPA--CCDC127	2	0	VAPA	1334	chr18:9914332:+	CCDC127	25486	chr5:206073:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,CCDC127->chr5:196986-218330:-,coiled-coil_domain_containing_127	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	VEZT--METAP2	2	0	VEZT	1141	chr12:95611662:+	METAP2	41371	chr12:95897841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	VEZT->chr12:95611522-95696566:+,vezatin,_adherens_junctions_transmembrane_protein,METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	2	0	TRUE	ACH-000488
TE11_OESOPHAGUS	NHSL1--MAP7	1	2	NHSL1	7828	chr6:138817356:-	MAP7	28659	chr6:136742937:-	ONLY_REF_SPLICE	NO	16	5	0.16	0.38	0.0104	0.0208	NHSL1->NHS_like_1,chr6:138743180-139013708:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	TE11_OESOPHAGUS	0.16	0.38	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	DIAPH3--TDRD3	1	1	DIAPH3	12910	chr13:60565292:-	TDRD3	39618	chr13:61013822:+	ONLY_REF_SPLICE	NO	53	2	0.04	0.5	0.0104	0.0104	DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	TE11_OESOPHAGUS	0.04	0.5	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	SPEN--DNAJC16	1	1	SPEN	5344	chr1:16203173:+	DNAJC16	31400	chr1:15860732:+	ONLY_REF_SPLICE	NO	41	10	0.05	0.17	0.0104	0.0104	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,DNAJC16->DnaJ_heat_shock_protein_family_(Hsp40)_member_C16,chr1:15853308-15918874:+	TE11_OESOPHAGUS	0.05	0.17	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000488
A375_SKIN	CECR7--AC008132.1	65	20	CECR7	1775	chr22:17518234:+	AC008132.1	13601	chr22:18723545:+	ONLY_REF_SPLICE	YES	6	0	0.93	1	0.847	0.2606	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	A375_SKIN	0.93	1	1.1076	TRUE	0	0	0	5	0	TRUE	ACH-000219
A375_SKIN	ST3GAL2--COG4	45	0	ST3GAL2	1289	chr16:70472852:-	COG4	19031	chr16:70553634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5864	0	LOCAL_REARRANGEMENT:-:[41331],ST3GAL2->ST3_beta-galactoside_alpha-2,3-sialyltransferase_2,chr16:70413338-70473140:-,COG4->chr16:70514471-70557468:-,component_of_oligomeric_golgi_complex_4	A375_SKIN	1	1	0.5864	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	L3MBTL2--EP300	31	20	L3MBTL2	5553	chr22:41610030:+	EP300	49101	chr22:41564725:+	ONLY_REF_SPLICE	YES	102	88	0.33	0.37	0.404	0.2606	LOCAL_REARRANGEMENT:+:[25128],L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	A375_SKIN	0.33	0.37	0.6646	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	LINC00511--SLC39A11	26	34	LINC00511	8867	chr17:70588342:-	SLC39A11	52513	chr17:70645407:-	ONLY_REF_SPLICE	YES	121	11	0.33	0.85	0.3388	0.4431	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	A375_SKIN	0.33	0.85	0.7819	TRUE	0	1	0	5	1	TRUE	ACH-000219
A375_SKIN	ELOVL5--KLHL31	23	29	ELOVL5	1333	chr6:53213615:-	KLHL31	22692	chr6:53517128:-	ONLY_REF_SPLICE	YES	294	0	0.15	1	0.2997	0.3779	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,KLHL31->chr6:53512699-53530506:-,kelch_like_family_member_31	A375_SKIN	0.15	1	0.6776	TRUE	0	0	0	2	0	TRUE	ACH-000219
A375_SKIN	CECR7--AC008132.1	14	13	CECR7	1775	chr22:17518234:+	AC008132.1	15153	chr22:18727043:+	ONLY_REF_SPLICE	YES	6	2	0.82	0.93	0.1824	0.1694	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	A375_SKIN	0.82	0.93	0.3518	TRUE	0	0	0	5	0	TRUE	ACH-000219
A375_SKIN	OSBPL9--RP11-191G24.1	14	5	OSBPL9	8120	chr1:52179751:+	RP11-191G24.1	39734	chr1:52026554:+	ONLY_REF_SPLICE	YES	120	0	0.14	1	0.1824	0.0652	LOCAL_REARRANGEMENT:+:[15550],OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,RP11-191G24.1->chr1:51983981-52027301:+	A375_SKIN	0.14	1	0.2476	TRUE	0	0	0	2	0	TRUE	ACH-000219
A375_SKIN	CECR7--AC008132.1	12	8	CECR7	1775	chr22:17518234:+	AC008132.1	16240	chr22:18732023:+	ONLY_REF_SPLICE	YES	6	16	0.77	0.56	0.1564	0.1042	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	A375_SKIN	0.56	0.77	0.2606	TRUE	0	0	0	5	0	TRUE	ACH-000219
A375_SKIN	DPYD--MIR137HG	11	6	DPYD	1166	chr1:98386440:-	MIR137HG	40342	chr1:98460556:-	ONLY_REF_SPLICE	YES	61	1	0.22	0.94	0.1433	0.0782	LOCAL_REARRANGEMENT:-:[66951],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-	A375_SKIN	0.22	0.94	0.2215	TRUE	0	0	0	2	0	TRUE	ACH-000219
A375_SKIN	ELOVL5--KLHL31	3	29	ELOVL5	1800	chr6:53213148:-	KLHL31	22692	chr6:53517128:-	ONLY_REF_SPLICE	YES	365	0	0.08	1	0.0391	0.3779	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,KLHL31->chr6:53512699-53530506:-,kelch_like_family_member_31	A375_SKIN	0.08	1	0.417	TRUE	0	0	0	2	0	TRUE	ACH-000219
A375_SKIN	DPYD--MIR137HG	5	4	DPYD	1166	chr1:98386440:-	MIR137HG	41427	chr1:98455125:-	ONLY_REF_SPLICE	YES	61	1	0.13	0.9	0.0652	0.0521	LOCAL_REARRANGEMENT:-:[66951],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-	A375_SKIN	0.13	0.9	0.1173	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	ST3GAL2--COG4	6	0	ST3GAL2	1289	chr16:70472852:-	COG4	20114	chr16:70551643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0782	0	LOCAL_REARRANGEMENT:-:[41331],ST3GAL2->ST3_beta-galactoside_alpha-2,3-sialyltransferase_2,chr16:70413338-70473140:-,COG4->chr16:70514471-70557468:-,component_of_oligomeric_golgi_complex_4	A375_SKIN	1	1	0.0782	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	LINC00511--SLC39A11	1	18	LINC00511	8867	chr17:70588342:-	SLC39A11	52820	chr17:70645100:-	ONLY_REF_SPLICE	YES	121	20	0.14	0.49	0.013	0.2346	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	A375_SKIN	0.14	0.49	0.2476	TRUE	0	1	0	5	1	TRUE	ACH-000219
A375_SKIN	RCC1--EIF4A1	3	0	RCC1	2175	chr1:28834672:+	EIF4A1	21291	chr17:7478437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0391	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	A375_SKIN	1	1	0.0391	TRUE	0	0	0	2	0	TRUE	ACH-000219
A375_SKIN	SLC25A44--LMNA	3	0	SLC25A44	1159	chr1:156164038:+	LMNA	29378	chr1:156105692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0391	0	LOCAL_REARRANGEMENT:+:[54000],SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,LMNA->chr1:156052364-156109880:+,lamin_A/C	A375_SKIN	1	1	0.0391	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	AP003900.6--AC011718.2	2	2	AP003900.6	1122	chr21:11169841:+	AC011718.2	15569	chr22:20643258:-	ONLY_REF_SPLICE	YES	8	2	0.33	0.67	0.0261	0.0261	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A375_SKIN	0.33	0.67	0.0522	TRUE	0	0	0	2	0	TRUE	ACH-000219
A375_SKIN	C17orf76-AS1--AP2B1	2	0	C17orf76-AS1	1593	chr17:16342728:+	AP2B1	30869	chr17:33977549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	C17orf76-AS1->chr17:16342136-16381992:+,AP2B1->adaptor_related_protein_complex_2_beta_1_subunit,chr17:33905065-34053436:+	A375_SKIN	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	DENND4A--PTPLAD1	2	0	DENND4A	1284	chr15:66084348:-	PTPLAD1	45382	chr15:65844014:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[79697],DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,PTPLAD1->chr15:65822756-65870687:+	A375_SKIN	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	ELMO1--AOAH	2	0	ELMO1	22806	chr7:37250991:-	AOAH	46527	chr7:36726399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1,AOAH->acyloxyacyl_hydrolase,chr7:36552456-36764154:-	A375_SKIN	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	SS18L1--DNAJC5	2	0	SS18L1	1124	chr20:60718945:+	DNAJC5	20214	chr20:62559688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,DNAJC5->DnaJ_heat_shock_protein_family_(Hsp40)_member_C5,chr20:62526518-62567384:+	A375_SKIN	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	WWOX--CLEC3A	1	1	WWOX	6262	chr16:78149051:+	CLEC3A	38815	chr16:78085855:+	ONLY_REF_SPLICE	NO	31	0	0.06	1	0.013	0.013	LOCAL_REARRANGEMENT:+:[32652],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,CLEC3A->C-type_lectin_domain_family_3_member_A,chr16:78056412-78100658:+	A375_SKIN	0.06	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000219
253J_URINARY_TRACT	MCU--RP11-344N10.2	171	54	MCU	9177	chr10:74594186:+	RP11-344N10.2	22137	chr10:74831065:+	INCL_NON_REF_SPLICE	YES	27	0	0.89	1	2.0557	0.6492	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-344N10.2->chr10:74831053-74833766:+	253J_URINARY_TRACT	0.89	1	2.7049	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	SPP1--RPL15	134	0	SPP1	6794	chr4:88903712:+	RPL15	11975	chr3:23959366:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6109	0	SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1,RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15	253J_URINARY_TRACT	1	1	1.6109	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	USP34--XPO1	82	11	USP34	1120	chr2:61697785:-	XPO1	85339	chr2:61729445:-	ONLY_REF_SPLICE	YES	5	94	0.95	0.5	0.9858	0.1322	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	253J_URINARY_TRACT	0.5	0.95	1.118	TRUE	0	1	0	4	1	TRUE	ACH-000011
253J_URINARY_TRACT	GPR126--VTA1	55	22	GPR126	10409	chr6:142714137:+	VTA1	40534	chr6:142510563:+	ONLY_REF_SPLICE	YES	314	129	0.2	0.37	0.6612	0.2645	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253J_URINARY_TRACT	0.2	0.37	0.9257	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	IMMP2L--DOCK4	45	1	IMMP2L	1667	chr7:111201907:-	DOCK4	48299	chr7:111462512:-	ONLY_REF_SPLICE	YES	33	33	0.58	0.58	0.541	0.012	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	253J_URINARY_TRACT	0.58	0.58	0.553	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	TMEM205--RPS28	7	0	TMEM205	3471	chr19:11453607:-	RPS28	6969	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	TMEM205->chr19:11453452-11457194:-,transmembrane_protein_205,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	253J_URINARY_TRACT	1	1	0.0842	TRUE	0	1	0	3	1	TRUE	ACH-000011
253J_URINARY_TRACT	TMSB10--RPS2	6	0	TMSB10	1922	chr2:85133670:+	RPS2	7643	chr16:2012266:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0721	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	253J_URINARY_TRACT	1	1	0.0721	TRUE	0	0	0	3	0	TRUE	ACH-000011
253J_URINARY_TRACT	USP34--XPO1	3	10	USP34	1120	chr2:61697785:-	XPO1	85609	chr2:61729175:-	ONLY_REF_SPLICE	YES	5	109	0.72	0.11	0.0361	0.1202	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	253J_URINARY_TRACT	0.11	0.72	0.1563	TRUE	0	1	0	4	1	TRUE	ACH-000011
253J_URINARY_TRACT	UBXN2A--NCOA1	5	1	UBXN2A	2468	chr2:24162546:+	NCOA1	31430	chr2:24914350:+	INCL_NON_REF_SPLICE	YES	6	3	0.5	0.67	0.0601	0.012	UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+,NCOA1->Oncogene{Bushman},chr2:24714783-24993571:+,nuclear_receptor_coactivator_1	253J_URINARY_TRACT	0.5	0.67	0.0721	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	ANXA1--ALDH1A1	5	0	ANXA1	1168	chr9:75766840:+	ALDH1A1	21839	chr9:75555168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0601	0	LOCAL_INVERSION:+:-:[71315],ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	253J_URINARY_TRACT	1	1	0.0601	TRUE	0	0	0	4	0	TRUE	ACH-000011
253J_URINARY_TRACT	XXbac-BPG248L24.12--SPP1	4	4	XXbac-BPG248L24.12	1474	chr6:31324897:+	SPP1	5039	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.0481	0.0481	XXbac-BPG248L24.12->chr6:31324424-31325414:+,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	253J_URINARY_TRACT	0.62	1	0.0962	TRUE	0	0	0	5	0	TRUE	ACH-000011
253J_URINARY_TRACT	NEGR1--PTGER3	4	3	NEGR1	9662	chr1:72058500:-	PTGER3	28535	chr1:71478167:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0481	0.0361	NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1,PTGER3->chr1:71318036-71513491:-,prostaglandin_E_receptor_3	253J_URINARY_TRACT	0.88	1	0.0842	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	AKAP9--RP11-115N4.1	4	1	AKAP9	31847	chr7:91691800:+	RP11-115N4.1	72451	chr7:91096160:+	ONLY_REF_SPLICE	YES	21	0	0.19	1	0.0481	0.012	AKAP9->A-kinase_anchoring_protein_9,Oncogene{Bushman},chr7:91570181-91739987:+,RP11-115N4.1->chr7:90940683-91144724:+	253J_URINARY_TRACT	0.19	1	0.0601	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	CTB-113P19.1--FTL	3	1	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0.012	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	253J_URINARY_TRACT	1	1	0.0481	TRUE	0	2	0	13	2	TRUE	ACH-000011
253J_URINARY_TRACT	RP11-973F15.1--RP11-94A24.1	3	1	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0.012	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	253J_URINARY_TRACT	1	1	0.0481	TRUE	0	2	0	7	2	TRUE	ACH-000011
253J_URINARY_TRACT	TMSB10--RPS2	3	0	TMSB10	1889	chr2:85133637:+	RPS2	7385	chr16:2012524:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	253J_URINARY_TRACT	1	1	0.0361	TRUE	0	0	0	3	0	TRUE	ACH-000011
253J_URINARY_TRACT	RP11-275N1.1--NEBL	2	3	RP11-275N1.1	4358	chr10:21643600:-	NEBL	14143	chr10:21309130:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.024	0.0361	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	253J_URINARY_TRACT	1	1	0.0601	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	RP11-275N1.1--NEBL	2	3	RP11-275N1.1	4358	chr10:21643600:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0.0361	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	253J_URINARY_TRACT	1	1	0.0601	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	UBXN2A--NCOA1	2	2	UBXN2A	3440	chr2:24163518:+	NCOA1	31430	chr2:24914350:+	ONLY_REF_SPLICE	YES	14	3	0.22	0.57	0.024	0.024	UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+,NCOA1->Oncogene{Bushman},chr2:24714783-24993571:+,nuclear_receptor_coactivator_1	253J_URINARY_TRACT	0.22	0.57	0.048	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	ALDH1A1--ANXA1	2	0	ALDH1A1	4560	chr9:75567851:-	ANXA1	30154	chr9:75780032:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_v2:{count=2;pct=0.02%;dist=Uterus=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[71315],ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-,ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+	253J_URINARY_TRACT	1	1	0.024	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	CHCHD3--EXOC4	2	0	CHCHD3	2325	chr7:132754902:-	EXOC4	41339	chr7:133314798:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	253J_URINARY_TRACT	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	MPLKIP--C7orf10	2	0	MPLKIP	1431	chr7:40173828:-	C7orf10	32310	chr7:40789033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	LOCAL_INVERSION:-:+:[317],MPLKIP->M-phase_specific_PLK1_interacting_protein,chr7:40165622-40174258:-,C7orf10->chr7:40174575-40900362:+	253J_URINARY_TRACT	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	PHF20--RBM39	2	0	PHF20	4583	chr20:34389527:+	RBM39	45958	chr20:34313077:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[29662],PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	253J_URINARY_TRACT	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	REXO2--NUP214	2	0	REXO2	4595	chr11:114314655:+	NUP214	49555	chr9:134090599:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	REXO2->RNA_exonuclease_2,chr11:114310108-114321001:+,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	253J_URINARY_TRACT	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	RP11-219B17.1--ITPR2	2	0	RP11-219B17.1	11656	chr15:60893256:+	ITPR2	35624	chr12:26808785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	RP11-219B17.1->chr15:60771377-60922836:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	253J_URINARY_TRACT	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	RP11-973F15.1--RP11-94A24.1	1	1	RP11-973F15.1	2854	chr8:123683508:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.012	0.012	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	253J_URINARY_TRACT	0.67	1	0.024	TRUE	0	2	0	7	2	TRUE	ACH-000011
NCIH2342_LUNG	RPS6KB1--VMP1	200	160	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	94	299	0.79	0.55	2.3611	1.8889	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH2342_LUNG	0.55	0.79	4.25	TRUE	0	8	0	9	5	TRUE	ACH-000951
NCIH2342_LUNG	PLXND1--TFDP2	119	89	PLXND1	11171	chr3:129293179:-	TFDP2	42396	chr3:141713983:-	ONLY_REF_SPLICE	YES	64	176	0.76	0.54	1.4048	1.0507	PLXND1->chr3:129274018-129325661:-,plexin_D1,TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2	NCIH2342_LUNG	0.54	0.76	2.4555	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	ERV3-1--PDE1A	57	62	ERV3-1	1203	chr7:64466919:-	PDE1A	15115	chr2:183129141:-	ONLY_REF_SPLICE	YES	43	0	0.73	1	0.6729	0.7319	ERV3-1->chr7:64451187-64467121:-,endogenous_retrovirus_group_3_member_1,PDE1A->chr2:183004763-183387919:-,phosphodiesterase_1A	NCIH2342_LUNG	0.73	1	1.4048	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	RPS6KB1--VMP1	16	62	RPS6KB1	15604	chr17:58018304:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	70	378	0.53	0.17	0.1889	0.7319	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH2342_LUNG	0.17	0.53	0.9208	TRUE	0	0	0	3	0	TRUE	ACH-000951
NCIH2342_LUNG	RPS6KB1--VMP1	2	113	RPS6KB1	5427	chr17:57990165:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	107	299	0.52	0.28	0.0236	1.334	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH2342_LUNG	0.28	0.52	1.3576	TRUE	0	5	0	6	5	TRUE	ACH-000951
NCIH2342_LUNG	DNASE1L1--KIF1C	22	30	DNASE1L1	1222	chrX:153640228:-	KIF1C	13820	chr17:4903145:+	ONLY_REF_SPLICE	YES	0	55	1	0.49	0.2597	0.3542	DNASE1L1->chrX:153629579-153640449:-,deoxyribonuclease_I-like_1,KIF1C->chr17:4901243-4931696:+,kinesin_family_member_1C	NCIH2342_LUNG	0.49	1	0.6139	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	KCNJ14--CABP5	18	29	KCNJ14	5766	chr19:48968663:+	CABP5	14922	chr19:48533839:-	INCL_NON_REF_SPLICE	YES	29	0	0.62	1	0.2125	0.3424	KCNJ14->chr19:48958766-48969367:+,potassium_voltage-gated_channel_subfamily_J_member_14,CABP5->calcium_binding_protein_5,chr19:48533210-48547310:-	NCIH2342_LUNG	0.62	1	0.5549	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	SETD5--ATP2B2	24	3	SETD5	1363	chr3:9439661:+	ATP2B2	43067	chr3:10452499:-	ONLY_REF_SPLICE	YES	11	0	0.71	1	0.2833	0.0354	SETD5->SET_domain_containing_5,chr3:9439299-9520924:+,ATP2B2->ATPase_plasma_membrane_Ca2+_transporting_2,chr3:10365707-10749716:-	NCIH2342_LUNG	0.71	1	0.3187	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	DGKZ--HIPK3	19	18	DGKZ	10893	chr11:46389629:+	HIPK3	37979	chr11:33368839:+	ONLY_REF_SPLICE	YES	158	70	0.19	0.35	0.2243	0.2125	DGKZ->chr11:46354455-46402104:+,diacylglycerol_kinase_zeta,HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3	NCIH2342_LUNG	0.19	0.35	0.4368	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	FAM63B--SLTM	15	28	FAM63B	8666	chr15:59124115:+	SLTM	28709	chr15:59204809:-	ONLY_REF_SPLICE	YES	25	159	0.63	0.21	0.1771	0.3306	LOCAL_INVERSION:+:-:[17145],FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH2342_LUNG	0.21	0.63	0.5077	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	FAM63B--SLTM	14	24	FAM63B	8666	chr15:59124115:+	SLTM	29757	chr15:59193486:-	ONLY_REF_SPLICE	YES	25	158	0.6	0.19	0.1653	0.2833	LOCAL_INVERSION:+:-:[17145],FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH2342_LUNG	0.19	0.6	0.4486	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	EPB41L4A--FBXL17	11	3	EPB41L4A	12133	chr5:111594926:-	FBXL17	49024	chr5:107216880:-	ONLY_REF_SPLICE	YES	5	22	0.74	0.39	0.1299	0.0354	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},EPB41L4A->chr5:111478138-111755013:-,erythrocyte_membrane_protein_band_4.1_like_4A,FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-	NCIH2342_LUNG	0.39	0.74	0.1653	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	PLXND1--TFDP2	3	35	PLXND1	10038	chr3:129294312:-	TFDP2	42396	chr3:141713983:-	ONLY_REF_SPLICE	YES	101	176	0.27	0.18	0.0354	0.4132	PLXND1->chr3:129274018-129325661:-,plexin_D1,TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2	NCIH2342_LUNG	0.18	0.27	0.4486	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	PLXND1--TFDP2	8	13	PLXND1	8651	chr3:129297172:-	TFDP2	42396	chr3:141713983:-	ONLY_REF_SPLICE	YES	141	176	0.13	0.11	0.0944	0.1535	PLXND1->chr3:129274018-129325661:-,plexin_D1,TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2	NCIH2342_LUNG	0.11	0.13	0.2479	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	KCNJ14--CABP5	5	18	KCNJ14	5459	chr19:48968356:+	CABP5	14922	chr19:48533839:-	INCL_NON_REF_SPLICE	YES	55	0	0.29	1	0.059	0.2125	KCNJ14->chr19:48958766-48969367:+,potassium_voltage-gated_channel_subfamily_J_member_14,CABP5->calcium_binding_protein_5,chr19:48533210-48547310:-	NCIH2342_LUNG	0.29	1	0.2715	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	PLXND1--TFDP2	1	20	PLXND1	9741	chr3:129294609:-	TFDP2	42396	chr3:141713983:-	ONLY_REF_SPLICE	YES	94	176	0.18	0.11	0.0118	0.2361	PLXND1->chr3:129274018-129325661:-,plexin_D1,TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2	NCIH2342_LUNG	0.11	0.18	0.2479	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	FAM63B--SLTM	3	9	FAM63B	7519	chr15:59114018:+	SLTM	29757	chr15:59193486:-	ONLY_REF_SPLICE	YES	47	158	0.2	0.07	0.0354	0.1062	LOCAL_INVERSION:+:-:[17145],FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH2342_LUNG	0.07	0.2	0.1416	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	KCNJ14--CABP5	5	1	KCNJ14	4559	chr19:48967456:+	CABP5	14922	chr19:48533839:-	INCL_NON_REF_SPLICE	YES	47	0	0.11	1	0.059	0.0118	KCNJ14->chr19:48958766-48969367:+,potassium_voltage-gated_channel_subfamily_J_member_14,CABP5->calcium_binding_protein_5,chr19:48533210-48547310:-	NCIH2342_LUNG	0.11	1	0.0708	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	AC093642.5--UBA3	4	4	AC093642.5	5696	chr2:243061208:+	UBA3	21616	chr3:69117159:-	ONLY_REF_SPLICE	YES	12	85	0.4	0.09	0.0472	0.0472	AC093642.5->chr2:243030784-243102304:+,UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3	NCIH2342_LUNG	0.09	0.4	0.0944	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	RP11-59N23.3--CMAS	3	6	RP11-59N23.3	1459	chr12:21815705:+	CMAS	6999	chr12:22208083:+	ONLY_REF_SPLICE	YES	10	129	0.47	0.07	0.0354	0.0708	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH2342_LUNG	0.07	0.47	0.1062	TRUE	0	14	5	5	10	TRUE	ACH-000951
NCIH2342_LUNG	TDRP--FBXO25	4	2	TDRP	3649	chr8:444494:-	FBXO25	21301	chr8:413007:+	ONLY_REF_SPLICE	YES	29	23	0.17	0.21	0.0472	0.0236	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1},LOCAL_INVERSION:-:+:[18578],TDRP->chr8:439803-495781:-,testis_development_related_protein,FBXO25->F-box_protein_25,chr8:356428-421225:+	NCIH2342_LUNG	0.17	0.21	0.0708	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	WDR43--SNUPN	4	2	WDR43	8889	chr2:29140861:+	SNUPN	26002	chr15:75918712:-	INCL_NON_REF_SPLICE	YES	136	0	0.04	1	0.0472	0.0236	WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+,SNUPN->chr15:75890424-75918810:-,snurportin_1	NCIH2342_LUNG	0.04	1	0.0708	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	TDRP--FBXO25	4	1	TDRP	3649	chr8:444494:-	FBXO25	23440	chr8:418715:+	ONLY_REF_SPLICE	YES	29	21	0.15	0.19	0.0472	0.0118	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1},LOCAL_INVERSION:-:+:[18578],TDRP->chr8:439803-495781:-,testis_development_related_protein,FBXO25->F-box_protein_25,chr8:356428-421225:+	NCIH2342_LUNG	0.15	0.19	0.059	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	AC093642.5--UBA3	2	8	AC093642.5	6865	chr2:243064606:+	UBA3	23305	chr3:69112654:-	ONLY_REF_SPLICE	YES	6	45	0.62	0.18	0.0236	0.0944	AC093642.5->chr2:243030784-243102304:+,UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3	NCIH2342_LUNG	0.18	0.62	0.118	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	AC093642.5--UBA3	1	12	AC093642.5	8077	chr2:243073017:+	UBA3	21616	chr3:69117159:-	ONLY_REF_SPLICE	YES	6	85	0.68	0.13	0.0118	0.1417	AC093642.5->chr2:243030784-243102304:+,UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3	NCIH2342_LUNG	0.13	0.68	0.1535	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	FAM63B--SLTM	1	12	FAM63B	7519	chr15:59114018:+	SLTM	28709	chr15:59204809:-	ONLY_REF_SPLICE	YES	47	159	0.22	0.08	0.0118	0.1417	LOCAL_INVERSION:+:-:[17145],FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH2342_LUNG	0.08	0.22	0.1535	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	AC093642.5--UBA3	1	11	AC093642.5	6865	chr2:243064606:+	UBA3	21616	chr3:69117159:-	ONLY_REF_SPLICE	YES	6	85	0.67	0.12	0.0118	0.1299	AC093642.5->chr2:243030784-243102304:+,UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3	NCIH2342_LUNG	0.12	0.67	0.1417	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	KCNJ14--CABP5	3	1	KCNJ14	3540	chr19:48965695:+	CABP5	14922	chr19:48533839:-	ONLY_REF_SPLICE	YES	45	0	0.08	1	0.0354	0.0118	KCNJ14->chr19:48958766-48969367:+,potassium_voltage-gated_channel_subfamily_J_member_14,CABP5->calcium_binding_protein_5,chr19:48533210-48547310:-	NCIH2342_LUNG	0.08	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	HMGN2--GSTP1	3	0	HMGN2	1141	chr1:26799081:+	GSTP1	7751	chr11:67351293:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:1/3694=0.03%,HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	NCIH2342_LUNG	1	1	0.0354	TRUE	0	0	0	2	0	TRUE	ACH-000951
NCIH2342_LUNG	FAM63B--SLTM	1	6	FAM63B	6416	chr15:59102587:+	SLTM	28709	chr15:59204809:-	ONLY_REF_SPLICE	YES	34	159	0.17	0.04	0.0118	0.0708	LOCAL_INVERSION:+:-:[17145],FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH2342_LUNG	0.04	0.17	0.0826	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	FAM63B--SLTM	1	5	FAM63B	6416	chr15:59102587:+	SLTM	29757	chr15:59193486:-	ONLY_REF_SPLICE	YES	34	158	0.15	0.04	0.0118	0.059	LOCAL_INVERSION:+:-:[17145],FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH2342_LUNG	0.04	0.15	0.0708	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	ABI1--FAM25C	2	0	ABI1	1341	chr10:27149676:-	FAM25C	21043	chr10:49205773:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,FAM25C->chr10:49199649-49207818:-,family_with_sequence_similarity_25_member_C	NCIH2342_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	BRI3--MRE11A	2	0	BRI3	2937	chr7:97911765:+	MRE11A	21469	chr11:94204925:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	BRI3->brain_protein_I3,chr7:97881691-97937162:+,MRE11A->ArcherDX_panel,FoundationOne_panel,MRE11_homolog_A,_double_strand_break_repair_nuclease,Oncogene{Bushman},chr11:94152895-94227074:-	NCIH2342_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	C6orf48--EXOC3	2	0	C6orf48	1844	chr6:31803228:+	EXOC3	18298	chr5:462075:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C6orf48->chr6:31802385-31807541:+,chromosome_6_open_reading_frame_48,EXOC3->chr5:443273-472052:+,exocyst_complex_component_3	NCIH2342_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	RCC1--TBCA	2	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	NCIH2342_LUNG	1	1	0.0236	TRUE	0	3	0	7	0	TRUE	ACH-000951
NCIH2342_LUNG	RP11-1057B8.2--RP11-452N4.1	1	1	RP11-1057B8.2	3793	chr8:135893523:+	RP11-452N4.1	8797	chr8:136300339:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0118	0.0118	RP11-1057B8.2->chr8:135862178-135894142:+,RP11-452N4.1->chr8:136246374-136311962:+	NCIH2342_LUNG	0.67	1	0.0236	TRUE	0	0	0	3	0	TRUE	ACH-000951
NCIH2342_LUNG	RP11-296O14.3--TNFSF4	1	1	RP11-296O14.3	1985	chr1:173429517:-	TNFSF4	11987	chr1:173157708:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0118	0.0118	RP11-296O14.3->chr1:173386932-173430501:-,TNFSF4->chr1:173152873-173176452:-,tumor_necrosis_factor_superfamily_member_4	NCIH2342_LUNG	0.5	1	0.0236	TRUE	0	3	0	3	3	TRUE	ACH-000951
NCIH2342_LUNG	SETBP1--SLC14A2	1	1	SETBP1	12050	chr18:42533305:+	SLC14A2	23851	chr18:43063198:+	ONLY_REF_SPLICE	YES	10	0	0.17	1	0.0118	0.0118	SETBP1->Oncogene{Bushman},SET_binding_protein_1,chr18:42260138-42648475:+,SLC14A2->chr18:42792960-43263072:+,solute_carrier_family_14_member_2	NCIH2342_LUNG	0.17	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000951
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	182	88	UPF3A	4015	chr13:115052104:+	CDC16	26255	chr13:115027362:+	ONLY_REF_SPLICE	YES	107	131	0.72	0.67	2.4671	1.1929	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.72	3.66	TRUE	0	2	0	3	2	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	149	70	UPF3A	4015	chr13:115052104:+	CDC16	27247	chr13:115028354:+	ONLY_REF_SPLICE	YES	107	125	0.67	0.64	2.0197	0.9489	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.67	2.9686	TRUE	0	2	0	3	2	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--RPS10	74	10	RPL23AP53	1103	chr8:182129:-	RPS10	12585	chr6:34386201:-	ONLY_REF_SPLICE	YES	7	522	0.92	0.14	1.0031	0.1356	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,RPS10->chr6:34385231-34393902:-,ribosomal_protein_S10	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.92	1.1387	TRUE	0	0	0	1	0	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--RPS10	32	13	RPL23AP53	2207	chr8:180804:-	RPS10	12585	chr6:34386201:-	ONLY_REF_SPLICE	YES	15	522	0.75	0.08	0.4338	0.1762	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,RPS10->chr6:34385231-34393902:-,ribosomal_protein_S10	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.75	0.61	TRUE	0	0	0	1	0	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--RPS10	21	15	RPL23AP53	4131	chr8:169290:-	RPS10	12585	chr6:34386201:-	ONLY_REF_SPLICE	YES	6	522	0.86	0.06	0.2847	0.2033	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,RPS10->chr6:34385231-34393902:-,ribosomal_protein_S10	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.86	0.488	TRUE	0	0	0	1	0	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--GZMM	2	0	BSG	2405	chr19:572701:+	GZMM	14559	chr19:547280:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[21378],BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GZMM->chr19:544034-549919:+,granzyme_M	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	5	0	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--RP11-453F18__B.1	2	0	CPSF6	11046	chr12:69656342:+	RP11-453F18__B.1	24979	chrX:130928494:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RP11-453F18__B.1->chrX:130836678-130964671:-	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	2	0	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	23926	chr13:114164553:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	4	0	1	4	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPL3--CCDC14	2	0	MRPL3	8064	chr3:131206524:-	CCDC14	20258	chr3:123675642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF168--TFRC	2	0	RNF168	1896	chr3:196229744:-	TFRC	15707	chr3:195803993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	RNF168->chr3:196195654-196230639:-,ring_finger_protein_168,TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000166
ECC10_STOMACH	NKD1--ADCY7	121	33	NKD1	2226	chr16:50583466:+	ADCY7	21506	chr16:50321823:+	ONLY_REF_SPLICE	YES	1225	1	0.11	0.99	1.2228	0.3335	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	ECC10_STOMACH	0.11	0.99	1.5563	TRUE	0	1	0	4	1	TRUE	ACH-000560
ECC10_STOMACH	SLC12A2--AP3S1	51	14	SLC12A2	1945	chr5:127420402:+	AP3S1	41125	chr5:115202367:+	ONLY_REF_SPLICE	YES	4	63	0.94	0.51	0.5154	0.1415	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	ECC10_STOMACH	0.51	0.94	0.6569	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	CWC27--GRIA4	26	5	CWC27	16634	chr5:64181373:+	GRIA4	32265	chr11:105732750:+	ONLY_REF_SPLICE	YES	25	0	0.55	1	0.2627	0.0505	CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+,GRIA4->chr11:105480721-105852819:+,glutamate_ionotropic_receptor_AMPA_type_subunit_4	ECC10_STOMACH	0.55	1	0.3132	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	APC--YTHDC2	20	15	APC	1385	chr5:112043579:+	YTHDC2	50697	chr5:112896777:+	ONLY_REF_SPLICE	YES	4	9	0.9	0.8	0.2021	0.1516	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,YTHDC2->YTH_domain_containing_2,chr5:112849380-112930982:+	ECC10_STOMACH	0.8	0.9	0.3537	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	WDR33--SAP130	5	5	WDR33	4479	chr2:128525763:-	SAP130	51360	chr2:128707982:-	ONLY_REF_SPLICE	YES	87	35	0.1	0.22	0.0505	0.0505	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	ECC10_STOMACH	0.1	0.22	0.101	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	APC--YTHDC2	1	16	APC	2961	chr5:112074157:+	YTHDC2	50697	chr5:112896777:+	ONLY_REF_SPLICE	NO	4	9	0.81	0.65	0.0101	0.1617	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,YTHDC2->YTH_domain_containing_2,chr5:112849380-112930982:+	ECC10_STOMACH	0.65	0.81	0.1718	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	APC--YTHDC2	1	5	APC	1385	chr5:112043579:+	YTHDC2	51814	chr5:112899070:+	ONLY_REF_SPLICE	YES	4	11	0.6	0.35	0.0101	0.0505	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,YTHDC2->YTH_domain_containing_2,chr5:112849380-112930982:+	ECC10_STOMACH	0.35	0.6	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	AC131097.3--ZMYND11	2	0	AC131097.3	5844	chr2:242908198:+	ZMYND11	12600	chr10:225934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	AC131097.3->chr2:242823514-243020873:+,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	ECC10_STOMACH	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	PCMTD1--PCNXL4	2	0	PCMTD1	7395	chr8:52758221:-	PCNXL4	27408	chr14:60582437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=1;pct=0.01%;dist=Uterus=1},PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,PCNXL4->chr14:60558629-60635851:+	ECC10_STOMACH	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000560
EFO21_OVARY	SRSF7--DHX57	180	37	SRSF7	5801	chr2:38973836:-	DHX57	13044	chr2:39095553:-	ONLY_REF_SPLICE	YES	557	1	0.28	1	1.6059	0.3301	LOCAL_REARRANGEMENT:-:[46235],SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7,DHX57->DEAH-box_helicase_57,chr2:39024871-39103075:-	EFO21_OVARY	0.28	1	1.936	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	ZNF787--PARP6	155	73	ZNF787	2455	chr19:56614508:-	PARP6	12652	chr15:72560012:-	ONLY_REF_SPLICE	YES	0	37	1	0.86	1.3828	0.6513	ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787,PARP6->chr15:72533522-72565340:-,poly(ADP-ribose)_polymerase_family_member_6	EFO21_OVARY	0.86	1	2.0341	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	RALA--CDK13	42	28	RALA	1343	chr7:39663424:+	CDK13	17750	chr7:40037093:+	ONLY_REF_SPLICE	YES	78	48	0.47	0.59	0.3747	0.2498	RALA->Oncogene{Bushman},chr7:39663082-39747723:+,v-ral_simian_leukemia_viral_oncogene_homolog_A_(ras_related),CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13	EFO21_OVARY	0.47	0.59	0.6245	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	BCAS3--RP11-347C12.1	43	13	BCAS3	7454	chr17:58786686:+	RP11-347C12.1	64563	chr16:30243168:-	ONLY_REF_SPLICE	YES	0	303	1	0.16	0.3836	0.116	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,RP11-347C12.1->chr16:30234258-30265831:-	EFO21_OVARY	0.16	1	0.4996	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	NPIPB5--BCAS3	41	20	NPIPB5	24318	chr16:22539294:+	BCAS3	42550	chr17:58824559:+	ONLY_REF_SPLICE	YES	222	0	0.22	1	0.3658	0.1784	NPIPB5->chr16:22490442-22547842:+,nuclear_pore_complex_interacting_protein_family_member_B5,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	EFO21_OVARY	0.22	1	0.5442	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	FAM155A--GNL3L	8	2	FAM155A	2054	chr13:108518030:-	GNL3L	11754	chrX:54565473:+	ONLY_REF_SPLICE	YES	0	75	1	0.12	0.0714	0.0178	FAM155A->chr13:107820883-108519083:-,family_with_sequence_similarity_155_member_A,GNL3L->G_protein_nucleolar_3_like,chrX:54556644-54587504:+	EFO21_OVARY	0.12	1	0.0892	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	SLC15A1--DOCK9	6	2	SLC15A1	17732	chr13:99339835:-	DOCK9	64629	chr13:99489863:-	ONLY_REF_SPLICE	YES	11	71	0.42	0.1	0.0535	0.0178	LOCAL_REARRANGEMENT:-:[40833],SLC15A1->chr13:99336055-99404908:-,solute_carrier_family_15_member_1,DOCK9->chr13:99445741-99738879:-,dedicator_of_cytokinesis_9	EFO21_OVARY	0.1	0.42	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	ST7--MET	5	0	ST7	1454	chr7:116593745:+	MET	44516	chr7:116371722:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1],ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	EFO21_OVARY	1	1	0.0446	TRUE	0	1	0	3	0	TRUE	ACH-000308
EFO21_OVARY	CCAT1--CASC8	4	3	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	64	0	0.1	1	0.0357	0.0268	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	EFO21_OVARY	0.1	1	0.0625	TRUE	0	26	0	18	24	TRUE	ACH-000308
EFO21_OVARY	NBAS--XDH	4	2	NBAS	44381	chr2:15432661:-	XDH	64003	chr2:31628830:-	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0357	0.0178	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,XDH->Oncogene{Bushman},chr2:31557187-31637581:-,xanthine_dehydrogenase	EFO21_OVARY	0.6	1	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	BCAS3--RP11-347C12.1	1	13	BCAS3	7681	chr17:58786913:+	RP11-347C12.1	64563	chr16:30243168:-	ONLY_REF_SPLICE	YES	0	303	1	0.04	0.0089	0.116	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,RP11-347C12.1->chr16:30234258-30265831:-	EFO21_OVARY	0.04	1	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	IAH1--IDI2-AS1	3	5	IAH1	6108	chr2:9621576:+	IDI2-AS1	18939	chr10:1081243:+	INCL_NON_REF_SPLICE	YES	51	0	0.14	1	0.0268	0.0446	IAH1->chr2:9613787-9636672:+,isoamyl_acetate-hydrolyzing_esterase_1_homolog,IDI2-AS1->IDI2_antisense_RNA_1,chr10:1068606-1090138:+	EFO21_OVARY	0.14	1	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	MEX3C--MRO	4	0	MEX3C	2797	chr18:48722937:-	MRO	17099	chr18:48335774:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	MEX3C->chr18:48700920-48744674:-,mex-3_RNA_binding_family_member_C,MRO->chr18:48324574-48351772:-,maestro	EFO21_OVARY	1	1	0.0357	TRUE	0	2	0	1	2	TRUE	ACH-000308
EFO21_OVARY	PAFAH1B2--KIAA0196	4	0	PAFAH1B2	1152	chr11:117015134:+	KIAA0196	43428	chr8:126044636:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,KIAA0196->KIAA0196,chr8:126036502-126104082:-	EFO21_OVARY	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	IAH1--IDI2-AS1	2	6	IAH1	6108	chr2:9621576:+	IDI2-AS1	18926	chr10:1081230:+	ONLY_REF_SPLICE	YES	51	0	0.14	1	0.0178	0.0535	IAH1->chr2:9613787-9636672:+,isoamyl_acetate-hydrolyzing_esterase_1_homolog,IDI2-AS1->IDI2_antisense_RNA_1,chr10:1068606-1090138:+	EFO21_OVARY	0.14	1	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	MID1--CTPS2	3	0	MID1	13557	chrX:10437737:-	CTPS2	38165	chrX:16657366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1,CTPS2->CTP_synthase_2,chrX:16606126-16731059:-	EFO21_OVARY	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	RASSF6--RP11-447E20.1	3	0	RASSF6	3489	chr4:74477448:-	RP11-447E20.1	20487	chr4:74643447:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	RASSF6->Oncogene{Bushman},Ras_association_domain_family_member_6,chr4:74437267-74486348:-,RP11-447E20.1->chr4:74643353-74643777:-	EFO21_OVARY	1	1	0.0268	TRUE	0	1	0	2	1	TRUE	ACH-000308
EFO21_OVARY	PIK3AP1--LYSMD4	2	2	PIK3AP1	13230	chr10:98388155:-	LYSMD4	35536	chr15:100261171:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.0178	0.0178	PIK3AP1->chr10:98353069-98480271:-,phosphoinositide-3-kinase_adaptor_protein_1,LYSMD4->LysM_domain_containing_4,chr15:100255902-100273766:-	EFO21_OVARY	0.22	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	ATR--UBAP2L	2	0	ATR	2273	chr3:142286905:-	UBAP2L	67421	chr1:154221715:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	CANX--PPFIA1	2	0	CANX	7200	chr5:179132853:+	PPFIA1	29647	chr11:70172368:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	CANX->calnexin,chr5:179105629-179157926:+,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	CCAT1--CASC8	1	4	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	64	1	0.07	0.83	0.0089	0.0357	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	EFO21_OVARY	0.07	0.83	0.0446	TRUE	0	7	0	14	6	TRUE	ACH-000308
EFO21_OVARY	COPB2--ATP13A3	2	0	COPB2	17575	chr3:139085410:-	ATP13A3	50636	chr3:194152621:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,ATP13A3->ATPase_13A3,chr3:194123401-194219093:-	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	CTPS2--MID1	2	0	CTPS2	18650	chrX:16627664:-	MID1	36979	chrX:10442790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	CTPS2->CTP_synthase_2,chrX:16606126-16731059:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	FAM155A--TMCC1	2	0	FAM155A	2054	chr13:108518030:-	TMCC1	18283	chr3:129551669:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	FAM155A->chr13:107820883-108519083:-,family_with_sequence_similarity_155_member_A,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	KLHL24--TSC22D2	2	0	KLHL24	6357	chr3:183369064:+	TSC22D2	27903	chr3:150174863:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	KLHL24->chr3:183353356-183402265:+,kelch_like_family_member_24,TSC22D2->TSC22_domain_family_member_2,chr3:150126122-150184218:+	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	LINC00665--CHMP1A	2	0	LINC00665	10538	chr19:36806859:-	CHMP1A	21206	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	LINC00665->chr19:36803969-36822620:-,long_intergenic_non-protein_coding_RNA_665,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	PIK3AP1--LYSMD4	2	0	PIK3AP1	13230	chr10:98388155:-	LYSMD4	36719	chr15:100258027:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	PIK3AP1->chr10:98353069-98480271:-,phosphoinositide-3-kinase_adaptor_protein_1,LYSMD4->LysM_domain_containing_4,chr15:100255902-100273766:-	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	PPM1A--HNRNPC	2	0	PPM1A	2705	chr14:60716395:+	HNRNPC	35307	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	PPM1A->chr14:60712470-60765805:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1A,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	RP3-400B16.4--OSBPL9	2	0	RP3-400B16.4	1123	chr6:4135779:+	OSBPL9	38696	chr1:52253387:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	RP3-400B16.4->chr6:4135657-4146287:+,OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	SLC15A1--DOCK9	2	0	SLC15A1	15735	chr13:99354734:-	DOCK9	64629	chr13:99489863:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	LOCAL_REARRANGEMENT:-:[40833],SLC15A1->chr13:99336055-99404908:-,solute_carrier_family_15_member_1,DOCK9->chr13:99445741-99738879:-,dedicator_of_cytokinesis_9	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	SLC38A2--METTL17	2	0	SLC38A2	8190	chr12:46756804:-	METTL17	22442	chr14:21464368:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,METTL17->chr14:21457929-21465189:+,methyltransferase_like_17	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	SRSF7--DHX57	2	0	SRSF7	3916	chr2:38975721:-	DHX57	25053	chr2:39075544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	LOCAL_REARRANGEMENT:-:[46235],SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7,DHX57->DEAH-box_helicase_57,chr2:39024871-39103075:-	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	SUGP2--TBC1D32	2	0	SUGP2	6862	chr19:19129918:-	TBC1D32	57599	chr6:121436387:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-,TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	VNN3--RPS12	2	0	VNN3	1513	chr6:133055392:-	RPS12	15043	chr6:133137600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:-:+:[79676],VNN3->chr6:133043926-133055904:-,vanin_3,RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	ZNF383--AC016582.2	2	0	ZNF383	2824	chr19:37710651:+	AC016582.2	18809	chr19:38324154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	ZNF383->chr19:37708828-37734828:+,zinc_finger_protein_383,AC016582.2->chr19:38314362-38345855:-	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	FAM155A--GNL3L	1	3	FAM155A	2054	chr13:108518030:-	GNL3L	10688	chrX:54558953:+	ONLY_REF_SPLICE	YES	0	28	1	0.12	0.0089	0.0268	FAM155A->chr13:107820883-108519083:-,family_with_sequence_similarity_155_member_A,GNL3L->G_protein_nucleolar_3_like,chrX:54556644-54587504:+	EFO21_OVARY	0.12	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	TPRG1--RP11-85M11.2	1	1	TPRG1	5882	chr3:188741735:+	RP11-85M11.2	46029	chr3:165298647:+	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0089	0.0089	TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1,RP11-85M11.2->chr3:164924748-165373211:+	EFO21_OVARY	0.25	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
HS840T_FIBROBLAST	JUN--MT2A	7	0	JUN	2308	chr1:59248478:-	MT2A	7705	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0925	0	JUN->ArcherDX_panel,FoundationOne_panel,Jun_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr1:59246465-59249785:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS840T_FIBROBLAST	1	1	0.0925	TRUE	0	0	0	6	0	TRUE	ACH-000284
HS840T_FIBROBLAST	VIM--TPM2	5	0	VIM	2156	chr10:17271413:+	TPM2	13400	chr9:35689822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS840T_FIBROBLAST	1	1	0.0661	TRUE	0	0	0	8	0	TRUE	ACH-000284
HS840T_FIBROBLAST	VIM--TPM2	5	0	VIM	2142	chr10:17271399:+	TPM2	13302	chr9:35689920:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS840T_FIBROBLAST	1	1	0.0661	TRUE	0	0	0	8	0	TRUE	ACH-000284
HS840T_FIBROBLAST	RP11-334E6.12--MT2A	3	7	RP11-334E6.12	2039	chr11:119289699:+	MT2A	5557	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	246	2	0.04	0.83	0.0397	0.0925	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS840T_FIBROBLAST	0.04	0.83	0.1322	TRUE	0	0	0	7	0	TRUE	ACH-000284
HS840T_FIBROBLAST	VIM--TMSB4X	4	0	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS840T_FIBROBLAST	1	1	0.0529	TRUE	0	0	0	15	0	TRUE	ACH-000284
HS840T_FIBROBLAST	VIM--TPM2	4	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS840T_FIBROBLAST	1	1	0.0529	TRUE	0	0	0	8	0	TRUE	ACH-000284
HS840T_FIBROBLAST	VIM--TMSB4X	3	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS840T_FIBROBLAST	1	1	0.0397	TRUE	0	0	0	15	0	TRUE	ACH-000284
HS840T_FIBROBLAST	VIM--TPM2	3	0	VIM	2476	chr10:17271733:+	TPM2	16358	chr9:35684499:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS840T_FIBROBLAST	1	1	0.0397	TRUE	0	0	0	2	0	TRUE	ACH-000284
HS840T_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13337	chr9:35689885:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS840T_FIBROBLAST	1	1	0.0397	TRUE	0	0	0	8	0	TRUE	ACH-000284
HS840T_FIBROBLAST	GREM2--FMN2	2	0	GREM2	1266	chr1:240775184:-	FMN2	27193	chr1:240492376:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	HS840T_FIBROBLAST	1	1	0.0264	TRUE	0	0	0	2	0	TRUE	ACH-000284
HS840T_FIBROBLAST	MTM1--SNX5	2	0	MTM1	1044	chrX:149737112:+	SNX5	38028	chr20:17923839:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	MTM1->chrX:149737069-149841795:+,myotubularin_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	HS840T_FIBROBLAST	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000284
HS840T_FIBROBLAST	WHSC1--GABPA	2	0	WHSC1	1119	chr4:1873269:+	GABPA	49046	chr21:27113884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,GABPA->GA_binding_protein_transcription_factor_alpha_subunit,chr21:27106881-27144771:+	HS840T_FIBROBLAST	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000284
RD_SOFT_TISSUE	PTPLAD1--IGF2	270	15	PTPLAD1	18266	chr15:65869815:+	IGF2	32690	chr11:2153287:-	INCL_NON_REF_SPLICE	YES	271	4072	0.51	0.07	2.163	0.1202	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0.07	0.51	2.2832	TRUE	0	0	0	4	0	TRUE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	264	10	PTPLAD1	18266	chr15:65869815:+	IGF2	32899	chr11:2153078:-	INCL_NON_REF_SPLICE	YES	271	6448	0.5	0.04	2.1149	0.0801	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0.04	0.5	2.195	TRUE	0	0	0	4	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SPG20--COG6	159	51	SPG20	8057	chr13:36903499:-	COG6	35562	chr13:40293373:+	ONLY_REF_SPLICE	YES	88	12	0.7	0.95	1.2738	0.4086	SPG20->chr13:36875775-36944317:-,spastic_paraplegia_20_(Troyer_syndrome),COG6->chr13:40229764-40365802:+,component_of_oligomeric_golgi_complex_6	RD_SOFT_TISSUE	0.7	0.95	1.6824	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	LRP11--FSD1	92	14	LRP11	3814	chr6:150174139:-	FSD1	16042	chr19:4305943:+	ONLY_REF_SPLICE	YES	18	33	0.85	0.76	0.737	0.1122	{Klijn_CCL:Lung=1},LRP11->LDL_receptor_related_protein_11,chr6:150139934-150186199:-,FSD1->chr19:4304597-4323840:+,fibronectin_type_III_and_SPRY_domain_containing_1	RD_SOFT_TISSUE	0.76	0.85	0.8492	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	TANC1--DAPL1	82	27	TANC1	2259	chr2:159857701:+	DAPL1	46461	chr2:159718918:+	INCL_NON_REF_SPLICE	YES	104	0	0.51	1	0.6569	0.2163	GTEx&tcga_normals:1/3694=0.03%,TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,DAPL1->chr2:159651829-159719293:+,death_associated_protein_like_1	RD_SOFT_TISSUE	0.51	1	0.8732	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	PSMD1--RP11-566H8.3	82	11	PSMD1	12030	chr2:231945028:+	RP11-566H8.3	32972	chr8:31241673:+	ONLY_REF_SPLICE	YES	423	0	0.18	1	0.6569	0.0881	PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1,RP11-566H8.3->chr8:31133112-31241795:+	RD_SOFT_TISSUE	0.18	1	0.745	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	KIF1B--UBE4B	62	11	KIF1B	4353	chr1:10292492:+	UBE4B	92212	chr1:10221200:+	ONLY_REF_SPLICE	YES	61	103	0.54	0.41	0.4967	0.0881	YOSHIHARA_TCGA_num_samples[GBM:1|KIRC:1],LOCAL_REARRANGEMENT:+:[29566],KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B	RD_SOFT_TISSUE	0.41	0.54	0.5848	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	E2F5--PDE4DIP	57	2	E2F5	1430	chr8:86089889:+	PDE4DIP	44361	chr1:144917932:-	ONLY_REF_SPLICE	YES	7	40	0.89	0.6	0.4566	0.016	{Klijn_CCL:Lung=1},E2F5->E2F_transcription_factor_5,chr8:86089460-86129387:+,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	RD_SOFT_TISSUE	0.6	0.89	0.4726	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SPATA5L1--TMIGD2	45	15	SPATA5L1	9557	chr15:45709597:+	TMIGD2	17670	chr19:4294813:-	ONLY_REF_SPLICE	YES	11	1	0.85	0.98	0.3605	0.1202	SPATA5L1->chr15:45694529-45713617:+,spermatogenesis_associated_5_like_1,TMIGD2->chr19:4292229-4302428:-,transmembrane_and_immunoglobulin_domain_containing_2	RD_SOFT_TISSUE	0.85	0.98	0.4807	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	PAK4--RYR1	42	8	PAK4	11086	chr19:39667355:+	RYR1	35075	chr19:38951015:+	ONLY_REF_SPLICE	YES	80	92	0.38	0.35	0.3365	0.0641	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	RD_SOFT_TISSUE	0.35	0.38	0.4006	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	DDX50--CCAR1	21	14	DDX50	2976	chr10:70666763:+	CCAR1	26809	chr10:70508893:+	ONLY_REF_SPLICE	YES	49	126	0.42	0.22	0.1682	0.1122	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},DDX50->DEAD-box_helicase_50,chr10:70661034-70706603:+,CCAR1->cell_division_cycle_and_apoptosis_regulator_1,chr10:70480769-70552134:+	RD_SOFT_TISSUE	0.22	0.42	0.2804	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	GLG1--FA2H	13	3	GLG1	1458	chr16:74640555:-	FA2H	38262	chr16:74774013:-	ONLY_REF_SPLICE	YES	82	0	0.16	1	0.1041	0.024	{Klijn_CCL:Head-Neck=1,Breast=1},GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,FA2H->chr16:74746853-74808729:-,fatty_acid_2-hydroxylase	RD_SOFT_TISSUE	0.16	1	0.1281	TRUE	0	0	0	2	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SPG20--COG6	3	41	SPG20	8027	chr13:36903529:-	COG6	35562	chr13:40293373:+	INCL_NON_REF_SPLICE	YES	78	12	0.36	0.79	0.024	0.3285	SPG20->chr13:36875775-36944317:-,spastic_paraplegia_20_(Troyer_syndrome),COG6->chr13:40229764-40365802:+,component_of_oligomeric_golgi_complex_6	RD_SOFT_TISSUE	0.36	0.79	0.3525	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	PAK4--RYR1	10	2	PAK4	11086	chr19:39667355:+	RYR1	38592	chr19:38956731:+	ONLY_REF_SPLICE	YES	80	77	0.13	0.13	0.0801	0.016	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	RD_SOFT_TISSUE	0.13	0.13	0.0961	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	DAPK2--ARID1A	8	7	DAPK2	9208	chr15:64275732:-	ARID1A	35510	chr1:27087347:+	ONLY_REF_SPLICE	YES	6	86	0.71	0.15	0.0641	0.0561	DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2,ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+	RD_SOFT_TISSUE	0.15	0.71	0.1202	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	TANC1--DAPL1	3	24	TANC1	2259	chr2:159857701:+	DAPL1	46464	chr2:159718921:+	ONLY_REF_SPLICE	YES	104	0	0.21	1	0.024	0.1923	GTEx&tcga_normals:1/3694=0.03%,TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,DAPL1->chr2:159651829-159719293:+,death_associated_protein_like_1	RD_SOFT_TISSUE	0.21	1	0.2163	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	TANC1--DAPL1	6	7	TANC1	1149	chr2:159825294:+	DAPL1	46461	chr2:159718918:+	INCL_NON_REF_SPLICE	YES	77	0	0.14	1	0.0481	0.0561	GTEx&tcga_normals:1/3694=0.03%,TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,DAPL1->chr2:159651829-159719293:+,death_associated_protein_like_1	RD_SOFT_TISSUE	0.14	1	0.1042	TRUE	0	1	0	1	1	TRUE	ACH-000169
RD_SOFT_TISSUE	SAMHD1--TRPS1	6	6	SAMHD1	1408	chr20:35579839:-	TRPS1	38917	chr8:116430680:-	ONLY_REF_SPLICE	YES	31	16	0.28	0.43	0.0481	0.0481	SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-,TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1	RD_SOFT_TISSUE	0.28	0.43	0.0962	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	LRP11--FSD1	3	14	LRP11	3823	chr6:150174130:-	FSD1	16042	chr19:4305943:+	INCL_NON_REF_SPLICE	YES	25	33	0.4	0.34	0.024	0.1122	{Klijn_CCL:Lung=1},LRP11->LDL_receptor_related_protein_11,chr6:150139934-150186199:-,FSD1->chr19:4304597-4323840:+,fibronectin_type_III_and_SPRY_domain_containing_1	RD_SOFT_TISSUE	0.34	0.4	0.1362	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	DAPK2--ARID1A	5	4	DAPK2	9116	chr15:64275824:-	ARID1A	35510	chr1:27087347:+	ONLY_REF_SPLICE	YES	4	86	0.69	0.09	0.0401	0.032	DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2,ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+	RD_SOFT_TISSUE	0.09	0.69	0.0721	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	NRG1--NRG1-IT1	5	3	NRG1	2344	chr8:31498245:+	NRG1-IT1	37780	chr8:31996731:+	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0401	0.024	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	RD_SOFT_TISSUE	0.67	1	0.0641	TRUE	0	3	0	4	3	TRUE	ACH-000169
RD_SOFT_TISSUE	SPATA5L1--TMIGD2	1	16	SPATA5L1	9557	chr15:45709597:+	TMIGD2	16310	chr19:4298342:-	ONLY_REF_SPLICE	YES	11	0	0.61	1	0.008	0.1282	SPATA5L1->chr15:45694529-45713617:+,spermatogenesis_associated_5_like_1,TMIGD2->chr19:4292229-4302428:-,transmembrane_and_immunoglobulin_domain_containing_2	RD_SOFT_TISSUE	0.61	1	0.1362	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	COL19A1--DNM3OS	4	0	COL19A1	15565	chr6:70672762:+	DNM3OS	57397	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	COL19A1->Oncogene{Bushman},chr6:70576463-70919679:+,collagen_type_XIX_alpha_1,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	RD_SOFT_TISSUE	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	KIF1B--UBE4B	1	11	KIF1B	11365	chr1:10332364:+	UBE4B	65983	chr1:10132086:+	ONLY_REF_SPLICE	YES	107	90	0.1	0.12	0.008	0.0881	YOSHIHARA_TCGA_num_samples[GBM:1|KIRC:1],LOCAL_REARRANGEMENT:+:[29566],KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B	RD_SOFT_TISSUE	0.1	0.12	0.0961	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	3	0	PTPLAD1	18228	chr15:65869777:+	IGF2	33170	chr11:2152807:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	1	1	0.024	TRUE	0	0	0	4	0	TRUE	ACH-000169
RD_SOFT_TISSUE	VAPB--GNAS	3	0	VAPB	1396	chr20:56964573:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	RD_SOFT_TISSUE	1	1	0.024	TRUE	0	3	0	7	1	TRUE	ACH-000169
RD_SOFT_TISSUE	CDC37--TIMM44	2	0	CDC37	7882	chr19:10503762:-	TIMM44	22470	chr19:7993051:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,TIMM44->chr19:7991603-8008805:-,translocase_of_inner_mitochondrial_membrane_44	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	RD_SOFT_TISSUE	1	1	0.016	TRUE	1	3	0	10	0	TRUE	ACH-000169
RD_SOFT_TISSUE	CPQ--SDC2	2	0	CPQ	1176	chr8:97657630:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	RD_SOFT_TISSUE	1	1	0.016	TRUE	1	37	5	9	9	TRUE	ACH-000169
RD_SOFT_TISSUE	EHBP1--LINC00667	2	0	EHBP1	10472	chr2:63058293:+	LINC00667	42821	chr18:5241698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,LINC00667->chr18:5232875-5246507:+,long_intergenic_non-protein_coding_RNA_667	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	LEMD3--IRAK3	2	0	LEMD3	2548	chr12:65564898:+	IRAK3	21199	chr12:66597491:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+,IRAK3->chr12:66582659-66648402:+,interleukin_1_receptor_associated_kinase_3	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	OSBPL9--RP11-230B22.1	2	0	OSBPL9	16325	chr1:52215867:+	RP11-230B22.1	39730	chr1:63175309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,RP11-230B22.1->chr1:63154153-63176365:+	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	PCM1--PSD3	2	0	PCM1	1349	chr8:17780697:+	PSD3	79251	chr8:18432795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1,PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SCRIB--CYHR1	2	0	SCRIB	5901	chr8:144892649:-	CYHR1	30472	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	SCRIB->chr8:144873090-144897549:-,scribbled_planar_cell_polarity_protein,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SETD2--RBM6	2	0	SETD2	1114	chr3:47205344:-	RBM6	47637	chr3:50085678:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SETD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SET_domain_containing_2,chr3:47057919-47205457:-,RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SH3RF3--IFI16	2	0	SH3RF3	3042	chr2:109964405:+	IFI16	30317	chr1:159015087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	SH3RF3->SH3_domain_containing_ring_finger_3,chr2:109745804-110262207:+,IFI16->chr1:158969758-159024945:+,interferon_gamma_inducible_protein_16	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SPOP--LUC7L3	2	0	SPOP	1302	chr17:47755295:-	LUC7L3	27028	chr17:48814321:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,LUC7L3->LUC7_like_3_pre-mRNA_splicing_factor,chr17:48796905-48833574:+	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SPPL3--TCTN2	2	0	SPPL3	5980	chr12:121248612:-	TCTN2	35472	chr12:124189079:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	SPPL3->Oncogene{Bushman},chr12:121200313-121342174:-,signal_peptide_peptidase_like_3,TCTN2->chr12:124155660-124192948:+,tectonic_family_member_2	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	TMEM126B--C11orf73	2	0	TMEM126B	1104	chr11:85339732:+	C11orf73	14516	chr11:86048421:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	TMEM126B->chr11:85339629-85347580:+,transmembrane_protein_126B,C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	VAPB--GNAS	2	0	VAPB	3372	chr20:56993419:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	5	0	4	0	TRUE	ACH-000169
RD_SOFT_TISSUE	NRG1--NRG1-IT1	1	3	NRG1	2344	chr8:31498245:+	NRG1-IT1	30006	chr8:31886895:+	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.008	0.024	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	RD_SOFT_TISSUE	0.5	1	0.032	TRUE	1	0	0	3	0	TRUE	ACH-000169
RD_SOFT_TISSUE	E2F5--PDE4DIP	1	2	E2F5	2542	chr8:86100031:+	PDE4DIP	44361	chr1:144917932:-	ONLY_REF_SPLICE	YES	11	40	0.21	0.07	0.008	0.016	{Klijn_CCL:Lung=1},E2F5->E2F_transcription_factor_5,chr8:86089460-86129387:+,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	RD_SOFT_TISSUE	0.07	0.21	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000169
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO11--AC073283.4	14	3	FBXO11	1305	chr2:48132628:-	AC073283.4	33269	chr2:47448462:-	ONLY_REF_SPLICE	YES	5	0	0.77	1	0.1725	0.037	FBXO11->F-box_protein_11,chr2:48016455-48132932:-,AC073283.4->chr2:47419544-47572213:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.2095	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO11--AC073283.4	12	1	FBXO11	1305	chr2:48132628:-	AC073283.4	38202	chr2:47419956:-	ONLY_REF_SPLICE	YES	5	27	0.72	0.33	0.1479	0.0123	FBXO11->F-box_protein_11,chr2:48016455-48132932:-,AC073283.4->chr2:47419544-47572213:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.72	0.1602	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SECISBP2L--HMGB2	11	0	SECISBP2L	20495	chr15:49284746:-	HMGB2	30528	chr4:174253317:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1356	0	SECISBP2L->SECIS_binding_protein_2_like,chr15:49280673-49338760:-,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1356	TRUE	0	0	0	2	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHRF1--LRRC56	9	4	PHRF1	9811	chr11:601701:+	LRRC56	30876	chr11:553963:+	ONLY_REF_SPLICE	YES	71	6	0.15	0.68	0.1109	0.0493	LOCAL_REARRANGEMENT:+:[21570],PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,LRRC56->chr11:537527-554916:+,leucine_rich_repeat_containing_56	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.68	0.1602	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SECISBP2L--HMGB2	7	0	SECISBP2L	20486	chr15:49284755:-	HMGB2	30518	chr4:174253327:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0863	0	SECISBP2L->SECIS_binding_protein_2_like,chr15:49280673-49338760:-,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0863	TRUE	0	0	0	2	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-340A15.2--CTC-535M15.2	3	3	CTC-340A15.2	1501	chr5:163724202:+	CTC-535M15.2	32673	chr5:165204982:+	ONLY_REF_SPLICE	YES	102	0	0.06	1	0.037	0.037	CTC-340A15.2->chr5:163723702-164598649:+,CTC-535M15.2->chr5:164776036-165205694:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.074	TRUE	0	0	0	3	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-340A15.2--CTC-535M15.2	2	5	CTC-340A15.2	25965	chr5:164434418:+	CTC-535M15.2	32673	chr5:165204982:+	ONLY_REF_SPLICE	YES	10	0	0.41	1	0.0246	0.0616	CTC-340A15.2->chr5:163723702-164598649:+,CTC-535M15.2->chr5:164776036-165205694:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	0.0862	TRUE	0	0	0	2	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHRF1--LRRC56	1	6	PHRF1	9811	chr11:601701:+	LRRC56	29742	chr11:552569:+	ONLY_REF_SPLICE	YES	71	8	0.09	0.47	0.0123	0.0739	LOCAL_REARRANGEMENT:+:[21570],PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,LRRC56->chr11:537527-554916:+,leucine_rich_repeat_containing_56	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.47	0.0862	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP8A1--CENPC	2	0	ATP8A1	21565	chr4:42553215:-	CENPC	55007	chr4:68385220:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	ATP8A1->ATPase_phospholipid_transporting_8A1,chr4:42410390-42659122:-,CENPC->centromere_protein_C,chr4:68337521-68411324:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DICER1--VRK1	2	0	DICER1	23279	chr14:95572015:-	VRK1	46457	chr14:97321561:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	DICER1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:95552565-95624347:-,dicer_1,_ribonuclease_III,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EXD3--RABL6	2	0	EXD3	1149	chr9:140317566:-	RABL6	36936	chr9:139717977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	1	0	0	3	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0319L--C11orf30	2	0	KIAA0319L	4118	chr1:36019951:-	C11orf30	48150	chr11:76224430:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRDE2--TDP1	2	0	NRDE2	1297	chr14:90798185:-	TDP1	44415	chr14:90485660:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	NRDE2->NRDE-2,_necessary_for_RNA_interference,_domain_containing,chr14:90742580-90798481:-,TDP1->chr14:90421283-90511106:+,tyrosyl-DNA_phosphodiesterase_1	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--PGAM5	2	0	PPP1R12C	7638	chr19:55614777:-	PGAM5	20968	chr12:133291444:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP2--BACH2	2	0	SSBP2	1817	chr5:81046800:-	BACH2	38655	chr6:90916400:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,BACH2->BTB_domain_and_CNC_homolog_2,Oncogene{Bushman},chr6:90636248-91006627:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAC2--TPP2	2	0	UBAC2	1166	chr13:99853193:+	TPP2	22182	chr13:103257143:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx&tcga_normals:1/3694=0.03%,UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,TPP2->chr13:103249353-103331521:+,tripeptidyl_peptidase_2	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBL3--SLC7A1	2	0	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	1	5	0	8	1	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP9Y--ACAD11	2	0	USP9Y	8666	chrY:14838726:+	ACAD11	68155	chr3:132297725:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	USP9Y->chrY:14813160-14972764:+,ubiquitin_specific_peptidase_9,_Y-linked,ACAD11->acyl-CoA_dehydrogenase_family_member_11,chr3:132276982-132379567:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF445--SENP7	2	0	ZNF445	1080	chr3:44519083:-	SENP7	35342	chr3:101062798:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	ZNF445->chr3:44481262-44519162:-,zinc_finger_protein_445,SENP7->SUMO1/sentrin_specific_peptidase_7,chr3:101043049-101232085:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO11--AC073283.4	1	1	FBXO11	1305	chr2:48132628:-	AC073283.4	34784	chr2:47442398:-	ONLY_REF_SPLICE	YES	5	27	0.29	0.07	0.0123	0.0123	FBXO11->F-box_protein_11,chr2:48016455-48132932:-,AC073283.4->chr2:47419544-47572213:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.29	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC144521.1--PMS1	2	0	AC144521.1	5648	chr3:18507531:+	PMS1	40353	chr2:190656516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	AC144521.1->chr3:18486516-18959184:+,PMS1->Oncogene{Bushman},PMS1_homolog_1,_mismatch_repair_system_component,chr2:190649107-190742355:+	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LPIN2--MYL12B	2	0	LPIN2	1229	chr18:3013085:-	MYL12B	32733	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	LPIN2->chr18:2916992-3013313:-,lipin_2,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	1	0	4	0	TRUE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC23A2--PCNA	2	0	SLC23A2	6819	chr20:4883088:-	PCNA	31114	chr20:5098310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	SLC23A2->chr20:4833002-4990939:-,solute_carrier_family_23_member_2,PCNA->Oncogene{Bushman},chr20:5095599-5107272:-,proliferating_cell_nuclear_antigen	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000020
DU4475_BREAST	ASH1L--RIT1	22	13	ASH1L	20035	chr1:155330092:-	RIT1	43368	chr1:155870409:-	ONLY_REF_SPLICE	YES	98	139	0.26	0.2	0.2572	0.152	{Klijn_CCL:Breast=1},ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,RIT1->Ras-like_without_CAAX_1,chr1:155867599-155881195:-	DU4475_BREAST	0.2	0.26	0.4092	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	FAM188A--DCLRE1C	11	8	FAM188A	15591	chr10:15828560:-	DCLRE1C	28196	chr10:14981868:-	ONLY_REF_SPLICE	YES	26	20	0.42	0.49	0.1286	0.0935	FAM188A->chr10:15820169-15902519:-,family_with_sequence_similarity_188_member_A,DCLRE1C->DNA_cross-link_repair_1C,chr10:14939358-14996431:-	DU4475_BREAST	0.42	0.49	0.2221	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	OSBPL5--ZNF195	11	1	OSBPL5	2524	chr11:3186446:-	ZNF195	34791	chr11:3392933:-	ONLY_REF_SPLICE	YES	92	93	0.12	0.11	0.1286	0.0117	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,ZNF195->chr11:3360491-3400448:-,zinc_finger_protein_195	DU4475_BREAST	0.11	0.12	0.1403	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	MTSS1--FER1L6-AS1	9	1	MTSS1	4065	chr8:125711767:-	FER1L6-AS1	33985	chr8:125016472:-	ONLY_REF_SPLICE	YES	58	0	0.15	1	0.1052	0.0117	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,FER1L6-AS1->FER1L6_antisense_RNA_1,chr8:124996378-125053023:-	DU4475_BREAST	0.15	1	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	AC019118.3--TSSC1	6	4	AC019118.3	1234	chr2:3149318:-	TSSC1	19669	chr2:3218019:-	ONLY_REF_SPLICE	YES	39	225	0.2	0.04	0.0701	0.0468	LOCAL_REARRANGEMENT:-:[43145],AC019118.3->chr2:3135353-3149551:-,TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1	DU4475_BREAST	0.04	0.2	0.1169	TRUE	0	0	0	2	0	TRUE	ACH-000258
DU4475_BREAST	DKK4--RPLP0	6	0	DKK4	2402	chr8:42233245:-	RPLP0	9297	chr12:120636803:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	DKK4->chr8:42231586-42234750:-,dickkopf_WNT_signaling_pathway_inhibitor_4,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	DU4475_BREAST	1	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	AC019118.3--TSSC1	4	7	AC019118.3	1234	chr2:3149318:-	TSSC1	18308	chr2:3261226:-	ONLY_REF_SPLICE	YES	39	208	0.22	0.05	0.0468	0.0818	LOCAL_REARRANGEMENT:-:[43145],AC019118.3->chr2:3135353-3149551:-,TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1	DU4475_BREAST	0.05	0.22	0.1286	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	RP11-173B14.5--TBC1D4	5	1	RP11-173B14.5	1166	chr13:76209965:-	TBC1D4	9439	chr13:75936743:-	ONLY_REF_SPLICE	YES	1	20	0.86	0.23	0.0584	0.0117	RP11-173B14.5->chr13:76178836-76210130:-,TBC1D4->TBC1_domain_family_member_4,chr13:75858808-76056250:-	DU4475_BREAST	0.23	0.86	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	H3F3A--RP4-613A2.1	5	0	H3F3A	3464	chr1:226252180:+	RP4-613A2.1	13026	chr1:229649725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0584	0	H3F3A->ArcherDX_panel,FoundationOne_panel,H3_histone,_family_3A,Oncogene{Bushman},chr1:226249552-226259702:+,RP4-613A2.1->chr1:229644248-229650019:+	DU4475_BREAST	1	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	DKK4--RPLP0	4	0	DKK4	2420	chr8:42233227:-	RPLP0	9313	chr12:120636787:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0	DKK4->chr8:42231586-42234750:-,dickkopf_WNT_signaling_pathway_inhibitor_4,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	DU4475_BREAST	1	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	VDAC1--PPP2CA	4	0	VDAC1	1487	chr5:133340338:-	PPP2CA	17679	chr5:133541822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,PPP2CA->chr5:133530025-133561833:-,protein_phosphatase_2_catalytic_subunit_alpha	DU4475_BREAST	1	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	POU2F1--DUSP27	3	2	POU2F1	1130	chr1:167190195:+	DUSP27	44892	chr1:167082947:+	ONLY_REF_SPLICE	YES	2	4	0.71	0.56	0.0351	0.0234	LOCAL_REARRANGEMENT:+:[91664],POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,DUSP27->chr1:167063282-167098402:+,dual_specificity_phosphatase_27_(putative)	DU4475_BREAST	0.56	0.71	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	ARFGEF1--RP11-27N21.3	3	1	ARFGEF1	1514	chr8:68255399:-	RP11-27N21.3	48007	chr8:80689574:+	ONLY_REF_SPLICE	YES	19	0	0.17	1	0.0351	0.0117	ARFGEF1->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_1,chr8:68085747-68255912:-,RP11-27N21.3->chr8:80680377-80715077:+	DU4475_BREAST	0.17	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	CTB-35F21.1--UBE2D2	3	0	CTB-35F21.1	1788	chr5:139065017:+	UBE2D2	12600	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	LOCAL_REARRANGEMENT:+:[56212],CTB-35F21.1->chr5:139064230-139124595:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	DU4475_BREAST	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	FAM188A--DCLRE1C	2	3	FAM188A	14084	chr10:15831246:-	DCLRE1C	28196	chr10:14981868:-	ONLY_REF_SPLICE	YES	27	20	0.16	0.2	0.0234	0.0351	FAM188A->chr10:15820169-15902519:-,family_with_sequence_similarity_188_member_A,DCLRE1C->DNA_cross-link_repair_1C,chr10:14939358-14996431:-	DU4475_BREAST	0.16	0.2	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	POU2F1--DUSP27	2	3	POU2F1	1130	chr1:167190195:+	DUSP27	43766	chr1:167064071:+	ONLY_REF_SPLICE	YES	2	1	0.71	0.83	0.0234	0.0351	LOCAL_REARRANGEMENT:+:[91664],POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,DUSP27->chr1:167063282-167098402:+,dual_specificity_phosphatase_27_(putative)	DU4475_BREAST	0.71	0.83	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	GRAPL--NAA38	2	0	GRAPL	4039	chr17:19041901:+	NAA38	16745	chr7:117831966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GRAPL->GRB2-related_adaptor_protein-like,chr17:19030782-19062489:+,NAA38->N(alpha)-acetyltransferase_38,_NatC_auxiliary_subunit,chr7:117824086-117832878:+	DU4475_BREAST	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	HHAT--SERTAD4	2	0	HHAT	3366	chr1:210522410:+	SERTAD4	23888	chr1:210411289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	LOCAL_REARRANGEMENT:+:[81620],HHAT->chr1:210501596-210849638:+,hedgehog_acyltransferase,SERTAD4->SERTA_domain_containing_4,chr1:210406144-210419976:+	DU4475_BREAST	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	NKD1--PAPD5	2	0	NKD1	2226	chr16:50583466:+	PAPD5	34403	chr16:50268837:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,PAPD5->PAP_associated_domain_containing_5,chr16:50186829-50269221:+	DU4475_BREAST	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	NRP2--PARD3B	2	0	NRP2	2374	chr2:206548087:+	PARD3B	68028	chr2:206480180:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:+:[61828],NRP2->chr2:206546714-206662857:+,neuropilin_2,PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta	DU4475_BREAST	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	TFRC--PCYT1A	2	0	TFRC	1147	chr3:195808914:-	PCYT1A	33845	chr3:195975194:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha	DU4475_BREAST	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	VDAC1--SKP1	2	0	VDAC1	1487	chr5:133340338:-	SKP1	17813	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-	DU4475_BREAST	1	1	0.0234	TRUE	0	1	0	1	1	TRUE	ACH-000258
DU4475_BREAST	XRN2--SAE1	2	0	XRN2	1170	chr20:21284111:+	SAE1	40897	chr19:47700490:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	DU4475_BREAST	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	RP13-977J11.8--NOC4L	1	2	RP13-977J11.8	1121	chr12:132674878:+	NOC4L	10383	chr12:132635526:+	ONLY_REF_SPLICE	YES	4	49	0.43	0.06	0.0117	0.0234	LOCAL_REARRANGEMENT:+:[37745],RP13-977J11.8->chr12:132674758-132675542:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	DU4475_BREAST	0.06	0.43	0.0351	TRUE	0	3	0	2	2	TRUE	ACH-000258
DU4475_BREAST	XKR9--LACTB2	1	2	XKR9	1174	chr8:71581773:+	LACTB2	20001	chr8:71556478:-	ONLY_REF_SPLICE	YES	47	180	0.06	0.02	0.0117	0.0234	LOCAL_INVERSION:+:-:[191],XKR9->XK_related_9,chr8:71581600-71702606:+,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	DU4475_BREAST	0.02	0.06	0.0351	TRUE	0	11	0	8	7	TRUE	ACH-000258
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRSF2--CD79A	41	0	SRSF2	2110	chr17:74732347:-	CD79A	7455	chr19:42381384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3828	0	SRSF2->Oncogene{Bushman},chr17:74730197-74733456:-,serine/arginine-rich_splicing_factor_2,CD79A->ArcherDX_panel,CD79a_molecule,FoundationOne_panel,Oncogene{Bushman},chr19:42381190-42385439:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3828	TRUE	0	0	0	1	0	TRUE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	7	0	PTMA	6024	chr2:232576657:+	ANP32B	19883	chr9:100777658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0654	TRUE	0	0	0	3	0	TRUE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--MRPL3	5	0	RCC1	2175	chr1:28834672:+	MRPL3	27527	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0467	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0467	TRUE	0	0	0	6	0	TRUE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM120B--PSMB1	2	0	FAM120B	3590	chr6:170615930:+	PSMB1	23731	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0187	TRUE	0	2	0	5	0	TRUE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC6A6--ARPC4	2	0	SLC6A6	14309	chr3:14513825:+	ARPC4	34165	chr3:9847894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	SLC6A6->chr3:14444076-14530857:+,solute_carrier_family_6_member_6,ARPC4->actin_related_protein_2/3_complex_subunit_4,chr3:9834179-9849410:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000402
NCIH1573_LUNG	EMC1--CAPZB	333	59	EMC1	16078	chr1:19553807:-	CAPZB	39272	chr1:19671746:-	ONLY_REF_SPLICE	YES	69	234	0.85	0.63	3.5101	0.6219	LOCAL_REARRANGEMENT:-:[87221],EMC1->ER_membrane_protein_complex_subunit_1,chr1:19542158-19578046:-,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	NCIH1573_LUNG	0.63	0.85	4.132	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	PAPOLA--AK7	149	57	PAPOLA	21705	chr14:97018959:+	AK7	53995	chr14:96954295:+	ONLY_REF_SPLICE	YES	149	4	0.58	0.98	1.5706	0.6008	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	NCIH1573_LUNG	0.58	0.98	2.1714	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	ARHGAP4--MECP2	118	51	ARHGAP4	1116	chrX:153200337:-	MECP2	30380	chrX:153298008:-	ONLY_REF_SPLICE	YES	297	28	0.36	0.86	1.2438	0.5376	LOCAL_REARRANGEMENT:-:[86572],ARHGAP4->Oncogene{Bushman},Rho_GTPase_activating_protein_4,chrX:153172821-153200452:-,MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2	NCIH1573_LUNG	0.36	0.86	1.7814	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	WBP1L--SUFU	99	39	WBP1L	1174	chr10:104503900:+	SUFU	21885	chr10:104375025:+	ONLY_REF_SPLICE	YES	61	8	0.69	0.95	1.0436	0.4111	WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+,SUFU->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SUFU_negative_regulator_of_hedgehog_signaling,chr10:104263744-104393292:+	NCIH1573_LUNG	0.69	0.95	1.4547	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	PAPOLA--AK7	81	13	PAPOLA	21705	chr14:97018959:+	AK7	54342	chr14:96954642:+	ONLY_REF_SPLICE	YES	149	21	0.39	0.82	0.8538	0.137	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	NCIH1573_LUNG	0.39	0.82	0.9908	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MYO6--SENP6	65	37	MYO6	1232	chr6:76459140:+	SENP6	71943	chr6:76421044:+	ONLY_REF_SPLICE	YES	28	68	0.78	0.6	0.6852	0.39	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[30912],MYO6->chr6:76458909-76629254:+,myosin_VI,SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+	NCIH1573_LUNG	0.6	0.78	1.0752	TRUE	0	1	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	FARP2--SNED1	65	17	FARP2	18844	chr2:242380971:+	SNED1	74948	chr2:242026807:+	ONLY_REF_SPLICE	YES	31	15	0.73	0.85	0.6852	0.1792	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,SNED1->chr2:241938255-242034983:+,sushi,_nidogen_and_EGF_like_domains_1	NCIH1573_LUNG	0.73	0.85	0.8644	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	BCAP31--MECP2	60	15	BCAP31	8067	chrX:152967462:-	MECP2	21856	chrX:153298008:-	ONLY_REF_SPLICE	YES	364	28	0.17	0.73	0.6325	0.1581	BCAP31->B-cell_receptor-associated_protein_31,chrX:152965947-152990152:-,MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2	NCIH1573_LUNG	0.17	0.73	0.7906	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	PPFIA1--RNF169	50	11	PPFIA1	21877	chr11:70194526:+	RNF169	49511	chr11:74545721:+	ONLY_REF_SPLICE	YES	147	27	0.29	0.69	0.527	0.116	PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,RNF169->chr11:74459913-74553458:+,ring_finger_protein_169	NCIH1573_LUNG	0.29	0.69	0.643	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	YIPF1--TMEM59	23	5	YIPF1	5047	chr1:54348786:-	TMEM59	18989	chr1:54513045:-	ONLY_REF_SPLICE	YES	49	580	0.36	0.05	0.2424	0.0527	{Klijn_CCL:Lung=1},YIPF1->Yip1_domain_family_member_1,chr1:54317392-54356407:-,TMEM59->chr1:54497347-54519177:-,transmembrane_protein_59	NCIH1573_LUNG	0.05	0.36	0.2951	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	TULP3--FKBP4	20	6	TULP3	8621	chr12:3042696:+	FKBP4	20892	chr12:2907872:+	ONLY_REF_SPLICE	YES	22	208	0.54	0.11	0.2108	0.0632	LOCAL_REARRANGEMENT:+:[71813],TULP3->chr12:2986389-3050306:+,tubby_like_protein_3,FKBP4->FK506_binding_protein_4,chr12:2904119-2914576:+	NCIH1573_LUNG	0.11	0.54	0.274	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	POLE4--HK2	20	3	POLE4	2655	chr2:75187273:+	HK2	15493	chr2:75101393:+	ONLY_REF_SPLICE	YES	115	35	0.17	0.4	0.2108	0.0316	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[65133],POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,HK2->chr2:75061108-75120486:+,hexokinase_2	NCIH1573_LUNG	0.17	0.4	0.2424	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	DVL1--SSU72	16	3	DVL1	1455	chr1:1284276:-	SSU72	18764	chr1:1480382:-	ONLY_REF_SPLICE	YES	101	251	0.16	0.07	0.1687	0.0316	DVL1->chr1:1270656-1284730:-,dishevelled_segment_polarity_protein_1,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	NCIH1573_LUNG	0.07	0.16	0.2003	TRUE	0	1	0	1	1	TRUE	ACH-000916
NCIH1573_LUNG	BRWD3--HMGN5	13	13	BRWD3	36803	chrX:79939509:-	HMGN5	53077	chrX:80377171:-	ONLY_REF_SPLICE	YES	17	9	0.6	0.74	0.137	0.137	{Klijn_CCL:Lung=1},BRWD3->Oncogene{Bushman},bromodomain_and_WD_repeat_domain_containing_3,chrX:79926353-80065187:-,HMGN5->chrX:80369200-80457441:-,high_mobility_group_nucleosome_binding_domain_5	NCIH1573_LUNG	0.6	0.74	0.274	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MAGI1--ATXN7	15	1	MAGI1	1839	chr3:66023671:-	ATXN7	50954	chr3:63884075:+	ONLY_REF_SPLICE	YES	14	2	0.53	0.89	0.1581	0.0105	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1},MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1,ATXN7->ataxin_7,chr3:63850233-63989138:+	NCIH1573_LUNG	0.53	0.89	0.1686	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--CNBD2	12	9	EPB41L1	9983	chr20:34713449:+	CNBD2	54372	chr20:34618279:+	ONLY_REF_SPLICE	YES	42	0	0.33	1	0.1265	0.0949	LOCAL_REARRANGEMENT:+:[60804],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,CNBD2->chr20:34556512-34618622:+,cyclic_nucleotide_binding_domain_containing_2	NCIH1573_LUNG	0.33	1	0.2214	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	ARHGAP4--MECP2	1	51	ARHGAP4	1116	chrX:153200337:-	MECP2	29268	chrX:153305354:-	ONLY_REF_SPLICE	NO	297	32	0.15	0.62	0.0105	0.5376	LOCAL_REARRANGEMENT:-:[86572],ARHGAP4->Oncogene{Bushman},Rho_GTPase_activating_protein_4,chrX:153172821-153200452:-,MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2	NCIH1573_LUNG	0.15	0.62	0.5481	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	BCAP31--MECP2	10	15	BCAP31	9102	chrX:152966396:-	MECP2	21856	chrX:153298008:-	INCL_NON_REF_SPLICE	YES	329	28	0.07	0.47	0.1054	0.1581	BCAP31->B-cell_receptor-associated_protein_31,chrX:152965947-152990152:-,MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2	NCIH1573_LUNG	0.07	0.47	0.2635	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--CNBD2	12	7	EPB41L1	8878	chr20:34710669:+	CNBD2	54372	chr20:34618279:+	ONLY_REF_SPLICE	YES	40	0	0.32	1	0.1265	0.0738	LOCAL_REARRANGEMENT:+:[60804],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,CNBD2->chr20:34556512-34618622:+,cyclic_nucleotide_binding_domain_containing_2	NCIH1573_LUNG	0.32	1	0.2003	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	AGBL4--FAF1	11	3	AGBL4	1151	chr1:50489435:-	FAF1	28729	chr1:51323669:-	ONLY_REF_SPLICE	YES	2	22	0.88	0.39	0.116	0.0316	YOSHIHARA_TCGA_num_samples[BRCA:1|PRAD:1],{Klijn_CCL:Breast=1},AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	NCIH1573_LUNG	0.39	0.88	0.1476	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	ATE1--KIAA1598	9	8	ATE1	13134	chr10:123596233:-	KIAA1598	24177	chr10:118808021:-	ONLY_REF_SPLICE	YES	18	0	0.49	1	0.0949	0.0843	ATE1->arginyltransferase_1,chr10:123499939-123688316:-,KIAA1598->chr10:118643742-118886097:-	NCIH1573_LUNG	0.49	1	0.1792	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--CNBD2	9	4	EPB41L1	5683	chr20:34700402:+	CNBD2	54372	chr20:34618279:+	ONLY_REF_SPLICE	YES	27	0	0.33	1	0.0949	0.0422	LOCAL_REARRANGEMENT:+:[60804],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,CNBD2->chr20:34556512-34618622:+,cyclic_nucleotide_binding_domain_containing_2	NCIH1573_LUNG	0.33	1	0.1371	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	RP11-30J20.1--RP11-431D12.1	9	2	RP11-30J20.1	2293	chr8:137549302:+	RP11-431D12.1	19777	chr8:137528209:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0949	0.0211	LOCAL_REARRANGEMENT:+:[922],RP11-30J20.1->chr8:137543041-137997178:+,RP11-431D12.1->chr8:137501691-137542119:+	NCIH1573_LUNG	1	1	0.116	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--CNBD2	6	12	EPB41L1	11138	chr20:34742818:+	CNBD2	54372	chr20:34618279:+	ONLY_REF_SPLICE	YES	46	0	0.28	1	0.0632	0.1265	LOCAL_REARRANGEMENT:+:[60804],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,CNBD2->chr20:34556512-34618622:+,cyclic_nucleotide_binding_domain_containing_2	NCIH1573_LUNG	0.28	1	0.1897	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MYO6--SENP6	5	16	MYO6	1232	chr6:76459140:+	SENP6	73032	chr6:76423229:+	ONLY_REF_SPLICE	YES	28	65	0.43	0.24	0.0527	0.1687	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[30912],MYO6->chr6:76458909-76629254:+,myosin_VI,SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+	NCIH1573_LUNG	0.24	0.43	0.2214	TRUE	0	1	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	ATE1--KIAA1598	7	7	ATE1	13134	chr10:123596233:-	KIAA1598	26799	chr10:118738819:-	ONLY_REF_SPLICE	YES	18	110	0.44	0.11	0.0738	0.0738	ATE1->arginyltransferase_1,chr10:123499939-123688316:-,KIAA1598->chr10:118643742-118886097:-	NCIH1573_LUNG	0.11	0.44	0.1476	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MYO6--SENP6	8	3	MYO6	1232	chr6:76459140:+	SENP6	74345	chr6:76425101:+	ONLY_REF_SPLICE	YES	28	60	0.28	0.15	0.0843	0.0316	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[30912],MYO6->chr6:76458909-76629254:+,myosin_VI,SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+	NCIH1573_LUNG	0.15	0.28	0.1159	TRUE	0	1	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	LHFPL2--ARSB	7	1	LHFPL2	4775	chr5:77944322:-	ARSB	32229	chr5:78135249:-	ONLY_REF_SPLICE	YES	33	26	0.2	0.24	0.0738	0.0105	LOCAL_REARRANGEMENT:-:[7188],LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,ARSB->arylsulfatase_B,chr5:78073032-78281910:-	NCIH1573_LUNG	0.2	0.24	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	UVRAG--TBX10	6	4	UVRAG	23629	chr11:75827059:+	TBX10	34544	chr11:67400574:-	ONLY_REF_SPLICE	YES	25	0	0.29	1	0.0632	0.0422	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,TBX10->T-box_10,chr11:67398774-67407031:-	NCIH1573_LUNG	0.29	1	0.1054	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	AGBL4--RP11-567C20.3	6	0	AGBL4	2274	chr1:50317068:-	RP11-567C20.3	28162	chr1:50671980:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0	AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,RP11-567C20.3->chr1:50671756-50688799:-	NCIH1573_LUNG	1	1	0.0632	TRUE	0	1	0	2	1	TRUE	ACH-000916
NCIH1573_LUNG	AC003084.2--PRPF40A	5	0	AC003084.2	1880	chr7:117643220:-	PRPF40A	18353	chr2:153530220:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	AC003084.2->chr7:117638912-117644099:-,PRPF40A->chr2:153508107-153574511:-,pre-mRNA_processing_factor_40_homolog_A	NCIH1573_LUNG	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MYO6--SENP6	3	6	MYO6	1232	chr6:76459140:+	SENP6	73194	chr6:76423391:+	ONLY_REF_SPLICE	YES	28	48	0.24	0.16	0.0316	0.0632	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[30912],MYO6->chr6:76458909-76629254:+,myosin_VI,SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+	NCIH1573_LUNG	0.16	0.24	0.0948	TRUE	0	1	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	PPFIA1--RNF169	1	12	PPFIA1	22994	chr11:70196145:+	RNF169	49511	chr11:74545721:+	ONLY_REF_SPLICE	NO	152	27	0.08	0.33	0.0105	0.1265	PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,RNF169->chr11:74459913-74553458:+,ring_finger_protein_169	NCIH1573_LUNG	0.08	0.33	0.137	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	BRWD3--HMGN5	2	7	BRWD3	35650	chrX:79940961:-	HMGN5	53077	chrX:80377171:-	ONLY_REF_SPLICE	YES	58	9	0.13	0.5	0.0211	0.0738	{Klijn_CCL:Lung=1},BRWD3->Oncogene{Bushman},bromodomain_and_WD_repeat_domain_containing_3,chrX:79926353-80065187:-,HMGN5->chrX:80369200-80457441:-,high_mobility_group_nucleosome_binding_domain_5	NCIH1573_LUNG	0.13	0.5	0.0949	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	BRWD3--HMGN5	1	9	BRWD3	36723	chrX:79939589:-	HMGN5	53077	chrX:80377171:-	ONLY_REF_SPLICE	YES	39	9	0.2	0.53	0.0105	0.0949	{Klijn_CCL:Lung=1},BRWD3->Oncogene{Bushman},bromodomain_and_WD_repeat_domain_containing_3,chrX:79926353-80065187:-,HMGN5->chrX:80369200-80457441:-,high_mobility_group_nucleosome_binding_domain_5	NCIH1573_LUNG	0.2	0.53	0.1054	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--RP4-550H1.4	3	1	EPB41L1	5683	chr20:34700402:+	RP4-550H1.4	41494	chr20:34662229:+	ONLY_REF_SPLICE	YES	27	0	0.13	1	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[6244],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP4-550H1.4->chr20:34660363-34673182:+	NCIH1573_LUNG	0.13	1	0.0421	TRUE	0	0	0	2	0	TRUE	ACH-000916
NCIH1573_LUNG	CYFIP1--AKR1A1	3	0	CYFIP1	5447	chr15:22928477:+	AKR1A1	43922	chr1:46032322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1,AKR1A1->aldo-keto_reductase_family_1,_member_A1_(aldehyde_reductase),chr1:46016215-46035721:+	NCIH1573_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	ATE1--VAX1	2	2	ATE1	13134	chr10:123596233:-	VAX1	27677	chr10:118891988:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0211	0.0211	ATE1->arginyltransferase_1,chr10:123499939-123688316:-,VAX1->chr10:118888032-118897812:-,ventral_anterior_homeobox_1	NCIH1573_LUNG	0.18	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--RP4-550H1.4	2	1	EPB41L1	2310	chr20:34680735:+	RP4-550H1.4	41494	chr20:34662229:+	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0211	0.0105	LOCAL_REARRANGEMENT:+:[6244],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP4-550H1.4->chr20:34660363-34673182:+	NCIH1573_LUNG	0.14	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	CPSF6--ANXA2	2	0	CPSF6	11046	chr12:69656342:+	ANXA2	36653	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIH1573_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	CPSF6--NR0B1	2	0	CPSF6	11046	chr12:69656342:+	NR0B1	23329	chrX:30322940:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	NCIH1573_LUNG	1	1	0.0211	TRUE	0	1	0	8	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--CNBD2	1	4	EPB41L1	6790	chr20:34701721:+	CNBD2	54372	chr20:34618279:+	ONLY_REF_SPLICE	YES	32	0	0.14	1	0.0105	0.0422	LOCAL_REARRANGEMENT:+:[60804],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,CNBD2->chr20:34556512-34618622:+,cyclic_nucleotide_binding_domain_containing_2	NCIH1573_LUNG	0.14	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MAGI1--ATXN7	2	0	MAGI1	1839	chr3:66023671:-	ATXN7	54350	chr3:63938055:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1},MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1,ATXN7->ataxin_7,chr3:63850233-63989138:+	NCIH1573_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	PRSS22--OBSCN	2	0	PRSS22	1148	chr16:2908024:-	OBSCN	12082	chr1:228401142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PRSS22->chr16:2902728-2908171:-,protease,_serine_22,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	NCIH1573_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	UGDH--SMIM14	2	0	UGDH	2029	chr4:39528903:-	SMIM14	19868	chr4:39606800:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:-:[18019],UGDH->UDP-glucose_6-dehydrogenase,chr4:39500375-39529931:-,SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14	NCIH1573_LUNG	1	1	0.0211	TRUE	0	1	0	4	0	TRUE	ACH-000916
NCIH1573_LUNG	YIPF1--TMEM59	2	0	YIPF1	5047	chr1:54348786:-	TMEM59	22356	chr1:54509198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	{Klijn_CCL:Lung=1},YIPF1->Yip1_domain_family_member_1,chr1:54317392-54356407:-,TMEM59->chr1:54497347-54519177:-,transmembrane_protein_59	NCIH1573_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	ATE1--VAX1	1	3	ATE1	13134	chr10:123596233:-	VAX1	25571	chr10:118894094:-	ONLY_REF_SPLICE	NO	18	1	0.18	0.8	0.0105	0.0316	ATE1->arginyltransferase_1,chr10:123499939-123688316:-,VAX1->chr10:118888032-118897812:-,ventral_anterior_homeobox_1	NCIH1573_LUNG	0.18	0.8	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	AGBL4--FAF1	1	2	AGBL4	1151	chr1:50489435:-	FAF1	29798	chr1:51267349:-	ONLY_REF_SPLICE	YES	2	39	0.6	0.07	0.0105	0.0211	YOSHIHARA_TCGA_num_samples[BRCA:1|PRAD:1],{Klijn_CCL:Breast=1},AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	NCIH1573_LUNG	0.07	0.6	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--CNBD2	1	1	EPB41L1	1372	chr20:34679797:+	CNBD2	54372	chr20:34618279:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[60804],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,CNBD2->chr20:34556512-34618622:+,cyclic_nucleotide_binding_domain_containing_2	NCIH1573_LUNG	0.4	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--RP4-550H1.4	1	1	EPB41L1	11138	chr20:34742818:+	RP4-550H1.4	41494	chr20:34662229:+	ONLY_REF_SPLICE	NO	46	0	0.04	1	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[6244],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP4-550H1.4->chr20:34660363-34673182:+	NCIH1573_LUNG	0.04	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--RP4-550H1.4	1	1	EPB41L1	9983	chr20:34713449:+	RP4-550H1.4	41494	chr20:34662229:+	ONLY_REF_SPLICE	YES	42	0	0.05	1	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[6244],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP4-550H1.4->chr20:34660363-34673182:+	NCIH1573_LUNG	0.05	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--RP4-550H1.4	1	1	EPB41L1	8878	chr20:34710669:+	RP4-550H1.4	41494	chr20:34662229:+	ONLY_REF_SPLICE	YES	40	0	0.05	1	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[6244],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP4-550H1.4->chr20:34660363-34673182:+	NCIH1573_LUNG	0.05	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	IMMP2L--AC003088.1	1	1	IMMP2L	12890	chr7:110526649:-	AC003088.1	21020	chr7:110151171:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0105	0.0105	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	NCIH1573_LUNG	0.2	1	0.021	TRUE	1	0	0	1	0	TRUE	ACH-000916
HEC108_ENDOMETRIUM	DTX2P1--PRKRIP1	82	8	DTX2P1	11762	chr7:76641336:+	PRKRIP1	25356	chr7:102016270:+	ONLY_REF_SPLICE	YES	5	72	0.95	0.56	0.8391	0.0819	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HEC108_ENDOMETRIUM	0.56	0.95	0.921	TRUE	0	0	0	3	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	CRISPLD2--CDH13	43	9	CRISPLD2	11157	chr16:84888435:+	CDH13	50439	chr16:83520082:+	ONLY_REF_SPLICE	YES	134	0	0.28	1	0.44	0.0921	CRISPLD2->chr16:84853590-84954374:+,cysteine_rich_secretory_protein_LCCL_domain_containing_2,CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+	HEC108_ENDOMETRIUM	0.28	1	0.5321	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	RP11-421F16.3--SUMO3	35	0	RP11-421F16.3	1829	chr12:27125347:+	SUMO3	11565	chr21:46228445:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3581	0	RP11-421F16.3->chr12:27124519-27132515:+,SUMO3->chr21:46225532-46238694:-,small_ubiquitin-like_modifier_3	HEC108_ENDOMETRIUM	1	1	0.3581	TRUE	0	0	0	3	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	GOLGA3--NDUFA10	22	0	GOLGA3	27277	chr12:133349158:-	NDUFA10	39955	chr2:240953518:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2251	0	GOLGA3->chr12:133345495-133405444:-,golgin_A3,NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-	HEC108_ENDOMETRIUM	1	1	0.2251	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	ANP32B--APP	16	0	ANP32B	8117	chr9:100773588:+	APP	24334	chr21:27394347:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1637	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	HEC108_ENDOMETRIUM	1	1	0.1637	TRUE	0	0	0	7	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	RP11-275N1.1--NEBL	12	6	RP11-275N1.1	2205	chr10:21658896:-	NEBL	14143	chr10:21309130:-	ONLY_REF_SPLICE	YES	1	66	0.95	0.21	0.1228	0.0614	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	HEC108_ENDOMETRIUM	0.21	0.95	0.1842	TRUE	0	0	0	3	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	ANP32B--APP	8	0	ANP32B	8117	chr9:100773588:+	APP	24322	chr21:27394359:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0819	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	HEC108_ENDOMETRIUM	1	1	0.0819	TRUE	0	0	0	7	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	DTX2P1--PRKRIP1	4	9	DTX2P1	19696	chr7:76673095:+	PRKRIP1	24253	chr7:102006421:+	INCL_NON_REF_SPLICE	YES	0	108	1	0.11	0.0409	0.0921	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HEC108_ENDOMETRIUM	0.11	1	0.133	TRUE	0	0	0	2	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	DTX2P1--PRKRIP1	4	9	DTX2P1	14033	chr7:76645172:+	PRKRIP1	24253	chr7:102006421:+	ONLY_REF_SPLICE	YES	18	108	0.42	0.11	0.0409	0.0921	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HEC108_ENDOMETRIUM	0.11	0.42	0.133	TRUE	0	0	0	2	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	ANP32B--APP	6	0	ANP32B	8123	chr9:100773594:+	APP	24331	chr21:27394350:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0614	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	HEC108_ENDOMETRIUM	1	1	0.0614	TRUE	0	0	0	7	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	GNPNAT1--TXNDC16	5	1	GNPNAT1	1241	chr14:53258146:-	TXNDC16	35390	chr14:52899305:-	ONLY_REF_SPLICE	YES	19	36	0.24	0.14	0.0512	0.0102	GNPNAT1->chr14:53241912-53258386:-,glucosamine-phosphate_N-acetyltransferase_1,TXNDC16->chr14:52897308-53019240:-,thioredoxin_domain_containing_16	HEC108_ENDOMETRIUM	0.14	0.24	0.0614	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	ANP32B--APP	5	0	ANP32B	8117	chr9:100773588:+	APP	24361	chr21:27394320:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	HEC108_ENDOMETRIUM	1	1	0.0512	TRUE	0	0	0	7	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	ANP32B--APP	4	0	ANP32B	8117	chr9:100773588:+	APP	24337	chr21:27394344:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	HEC108_ENDOMETRIUM	1	1	0.0409	TRUE	0	0	0	7	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	VGLL4--RAB33A	4	0	VGLL4	17693	chr3:11643307:-	RAB33A	30432	chrX:129318259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0409	0	VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,RAB33A->RAB33A,_member_RAS_oncogene_family,chrX:129305623-129318844:+	HEC108_ENDOMETRIUM	1	1	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	ACTR3C--RP11-728K20.1	3	1	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	15	0	0.21	1	0.0307	0.0102	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	HEC108_ENDOMETRIUM	0.21	1	0.0409	TRUE	0	5	0	16	1	TRUE	ACH-000990
HEC108_ENDOMETRIUM	KIF1C--INCA1	3	0	KIF1C	3405	chr17:4903647:+	INCA1	29459	chr17:4893560:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_INVERSION:+:-:[338],KIF1C->chr17:4901243-4931696:+,kinesin_family_member_1C,INCA1->chr17:4891425-4900905:-,inhibitor_of_CDK,_cyclin_A1_interacting_protein_1	HEC108_ENDOMETRIUM	1	1	0.0307	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	RP11-275N1.1--NEBL	1	6	RP11-275N1.1	3264	chr10:21657426:-	NEBL	14143	chr10:21309130:-	ONLY_REF_SPLICE	NO	0	66	1	0.1	0.0102	0.0614	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	HEC108_ENDOMETRIUM	0.1	1	0.0716	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	COPS2--MYEF2	2	0	COPS2	1137	chr15:49447722:-	MYEF2	21695	chr15:48461036:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx&tcga_normals:1/3694=0.03%,COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-,MYEF2->chr15:48431625-48470714:-,myelin_expression_factor_2	HEC108_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	SAMD12--HMGB1	2	0	SAMD12	1192	chr8:119634043:-	HMGB1	25504	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	HEC108_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	BTBD3--TASP1	1	1	BTBD3	1232	chr20:11871602:+	TASP1	25295	chr20:13550233:-	ONLY_REF_SPLICE	YES	9	7	0.18	0.22	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},BTBD3->BTB_domain_containing_3,chr20:11871371-11907257:+,TASP1->chr20:13246709-13619587:-,taspase_1	HEC108_ENDOMETRIUM	0.18	0.22	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000990
BICR18_UPPER_AERODIGESTIVE_TRACT	NUP188--NUP214	62	31	NUP188	29228	chr9:131764255:+	NUP214	44735	chr9:134010285:+	ONLY_REF_SPLICE	YES	47	16	0.66	0.85	0.4263	0.2131	NUP188->chr9:131709978-131769375:+,nucleoporin_188kDa,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	BICR18_UPPER_AERODIGESTIVE_TRACT	0.66	0.85	0.6394	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	SWAP70--C11orf49	48	17	SWAP70	2343	chr11:9715833:+	C11orf49	42920	chr11:47181320:+	INCL_NON_REF_SPLICE	YES	34	19	0.66	0.77	0.33	0.1169	SWAP70->Oncogene{Bushman},SWAP_switching_B-cell_complex_70kDa_subunit,chr11:9685624-9774538:+,C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49	BICR18_UPPER_AERODIGESTIVE_TRACT	0.66	0.77	0.4469	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	POM121B--RPL37A	36	15	POM121B	8774	chr7:72716342:+	RPL37A	12583	chr2:217363566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2475	0.1031	POM121B->POM121_transmembrane_nucleoporin_B_(pseudogene),chr7:72707497-72716496:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.3506	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	TOMM40--G6PC3	17	14	TOMM40	4498	chr19:45397323:+	G6PC3	14885	chr17:42151528:+	ONLY_REF_SPLICE	YES	217	10	0.12	0.76	0.1169	0.0963	TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,G6PC3->chr17:42148103-42153709:+,glucose_6_phosphatase_catalytic_subunit_3	BICR18_UPPER_AERODIGESTIVE_TRACT	0.12	0.76	0.2132	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	KCNQ5--VMP1	17	10	KCNQ5	1796	chr6:73332315:+	VMP1	31095	chr17:57808782:+	ONLY_REF_SPLICE	YES	6	41	0.82	0.4	0.1169	0.0688	KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	BICR18_UPPER_AERODIGESTIVE_TRACT	0.4	0.82	0.1857	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	C7orf60--IMMP2L	15	9	C7orf60	5088	chr7:112535624:-	IMMP2L	27510	chr7:110303777:-	ONLY_REF_SPLICE	YES	33	19	0.42	0.56	0.1031	0.0619	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Frontal_Cortex_(BA9)=1},C7orf60->chr7:112459202-112579971:-,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	BICR18_UPPER_AERODIGESTIVE_TRACT	0.42	0.56	0.165	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	TOMM40--G6PC3	10	7	TOMM40	4498	chr19:45397323:+	G6PC3	15405	chr17:42152048:+	ONLY_REF_SPLICE	YES	217	7	0.07	0.71	0.0688	0.0481	TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,G6PC3->chr17:42148103-42153709:+,glucose_6_phosphatase_catalytic_subunit_3	BICR18_UPPER_AERODIGESTIVE_TRACT	0.07	0.71	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	DNMT3A--HADHA	9	0	DNMT3A	1765	chr2:25564695:-	HADHA	39757	chr2:26427065:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0619	0	DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-,HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0619	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	FBXL2--TOPAZ1	7	4	FBXL2	10864	chr3:33406211:+	TOPAZ1	35454	chr3:44308489:+	ONLY_REF_SPLICE	YES	11	0	0.5	1	0.0481	0.0275	FBXL2->F-box_and_leucine-rich_repeat_protein_2,chr3:33318517-33445154:+,TOPAZ1->chr3:44283378-44373590:+,testis_and_ovary_specific_PAZ_domain_containing_1	BICR18_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	CPT1A--AP000439.1	7	0	CPT1A	2423	chr11:68609243:-	AP000439.1	33128	chr11:69242131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0481	0	CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-,AP000439.1->chr11:69240458-69244389:+	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0481	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	POM121B--RPL37A	4	2	POM121B	7067	chr7:72714635:+	RPL37A	12604	chr2:217363587:+	INCL_NON_REF_SPLICE	YES	15	0	0.29	1	0.0275	0.0138	POM121B->POM121_transmembrane_nucleoporin_B_(pseudogene),chr7:72707497-72716496:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	BICR18_UPPER_AERODIGESTIVE_TRACT	0.29	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	AMDHD2--OR2L13	3	1	AMDHD2	1767	chr16:2571124:+	OR2L13	12014	chr1:248262660:+	ONLY_REF_SPLICE	YES	40	0	0.09	1	0.0206	0.0069	AMDHD2->amidohydrolase_domain_containing_2,chr16:2570358-2581423:+,OR2L13->chr1:248100493-248264224:+,olfactory_receptor_family_2_subfamily_L_member_13	BICR18_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	AMDHD2--OR2L13	3	1	AMDHD2	1767	chr16:2571124:+	OR2L13	11307	chr1:248261953:+	ONLY_REF_SPLICE	YES	40	0	0.09	1	0.0206	0.0069	AMDHD2->amidohydrolase_domain_containing_2,chr16:2570358-2581423:+,OR2L13->chr1:248100493-248264224:+,olfactory_receptor_family_2_subfamily_L_member_13	BICR18_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	BIN1--SLC4A10	3	1	BIN1	5470	chr2:127826500:-	SLC4A10	28186	chr2:162477425:+	ONLY_REF_SPLICE	YES	53	0	0.07	1	0.0206	0.0069	BIN1->Oncogene{Bushman},bridging_integrator_1,chr2:127805603-127864931:-,SLC4A10->chr2:162280843-162841792:+,solute_carrier_family_4_member_10	BICR18_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	FBXL2--TOPAZ1	2	1	FBXL2	4577	chr3:33339217:+	TOPAZ1	35454	chr3:44308489:+	ONLY_REF_SPLICE	YES	10	0	0.23	1	0.0138	0.0069	FBXL2->F-box_and_leucine-rich_repeat_protein_2,chr3:33318517-33445154:+,TOPAZ1->chr3:44283378-44373590:+,testis_and_ovary_specific_PAZ_domain_containing_1	BICR18_UPPER_AERODIGESTIVE_TRACT	0.23	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	SWAP70--C11orf49	2	1	SWAP70	2343	chr11:9715833:+	C11orf49	43963	chr11:47182678:+	ONLY_REF_SPLICE	YES	34	17	0.08	0.15	0.0138	0.0069	SWAP70->Oncogene{Bushman},SWAP_switching_B-cell_complex_70kDa_subunit,chr11:9685624-9774538:+,C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49	BICR18_UPPER_AERODIGESTIVE_TRACT	0.08	0.15	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	FBXL2--TOPAZ1	1	4	FBXL2	10864	chr3:33406211:+	TOPAZ1	34389	chr3:44303911:+	ONLY_REF_SPLICE	NO	11	0	0.31	1	0.0069	0.0275	FBXL2->F-box_and_leucine-rich_repeat_protein_2,chr3:33318517-33445154:+,TOPAZ1->chr3:44283378-44373590:+,testis_and_ovary_specific_PAZ_domain_containing_1	BICR18_UPPER_AERODIGESTIVE_TRACT	0.31	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	KCNQ5--VMP1	2	0	KCNQ5	1796	chr6:73332315:+	VMP1	38106	chr17:57886157:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0138	0	KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0138	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	PPFIA1--ORAOV1	2	0	PPFIA1	2737	chr11:70118542:+	ORAOV1	49915	chr11:69482780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0138	0	PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ORAOV1->Oncogene{Bushman},chr11:69467844-69490184:-,oral_cancer_overexpressed_1	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0138	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	C7orf60--IMMP2L-IT1	1	2	C7orf60	5088	chr7:112535624:-	IMMP2L-IT1	14555	chr7:110364647:-	ONLY_REF_SPLICE	YES	33	0	0.08	1	0.0069	0.0138	C7orf60->chr7:112459202-112579971:-,IMMP2L-IT1->chr7:110364215-110365881:-	BICR18_UPPER_AERODIGESTIVE_TRACT	0.08	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	DFFB--CEP104	1	1	DFFB	1437	chr1:3774281:+	CEP104	16907	chr1:3768985:-	ONLY_REF_SPLICE	NO	16	1	0.11	0.67	0.0069	0.0069	LOCAL_INVERSION:+:-:[67],DFFB->DNA_fragmentation_factor_subunit_beta,chr1:3773845-3801993:+,CEP104->centrosomal_protein_104,chr1:3728645-3773778:-	BICR18_UPPER_AERODIGESTIVE_TRACT	0.11	0.67	0.0138	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	FBXL2--TOPAZ1	1	1	FBXL2	4814	chr3:33339454:+	TOPAZ1	35454	chr3:44308489:+	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0069	0.0069	FBXL2->F-box_and_leucine-rich_repeat_protein_2,chr3:33318517-33445154:+,TOPAZ1->chr3:44283378-44373590:+,testis_and_ovary_specific_PAZ_domain_containing_1	BICR18_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.0138	TRUE	0	0	0	1	0	TRUE	ACH-000992
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	6419	3121	NBAS	5992	chr2:15691617:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	27	2	1	1	67.2001	32.6735	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	1	1	99.8736	TRUE	0	0	0	5	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	5	2329	NBAS	4948	chr2:15693550:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	37	2	0.98	1	0.0523	24.3822	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0.98	1	24.4345	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	59	947	NBAS	5992	chr2:15691617:-	FAM49A	69789	chr2:16745362:-	ONLY_REF_SPLICE	YES	27	769	0.97	0.57	0.6177	9.9141	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0.57	0.97	10.5318	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	2	919	NBAS	3235	chr2:15696907:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	1654	2	0.36	1	0.0209	9.621	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0.36	1	9.6419	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	5	376	NBAS	1143	chr2:15701312:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	1566	2	0.2	0.99	0.0523	3.9363	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0.2	0.99	3.9886	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	8	102	NBAS	5992	chr2:15691617:-	FAM49A	71503	chr2:16742801:-	ONLY_REF_SPLICE	YES	27	2762	0.8	0.04	0.0838	1.0678	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0.04	0.8	1.1516	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MAPT-AS1--ACOT11	8	9	MAPT-AS1	1121	chr17:43972846:-	ACOT11	9678	chr1:55050328:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0838	0.0942	MAPT-AS1->MAPT_antisense_RNA_1,chr17:43921017-43972966:-,ACOT11->acyl-CoA_thioesterase_11,chr1:55007930-55104865:+	NH6_AUTONOMIC_GANGLIA	0.94	1	0.178	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	CTD-2251F13.1--PRKD1	3	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NH6_AUTONOMIC_GANGLIA	1	1	0.0314	TRUE	0	3	0	9	3	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	KANSL1--MAPT-AS1	2	3	KANSL1	7536	chr17:44248221:-	MAPT-AS1	34397	chr17:43921527:-	ONLY_REF_SPLICE	YES	80	0	0.06	1	0.0209	0.0314	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,MAPT-AS1->MAPT_antisense_RNA_1,chr17:43921017-43972966:-	NH6_AUTONOMIC_GANGLIA	0.06	1	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	CPSF6--AHI1	2	0	CPSF6	11046	chr12:69656342:+	AHI1	32260	chr6:135774574:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,AHI1->Abelson_helper_integration_site_1,Oncogene{Bushman},chr6:135604670-135818914:-	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	1	0	7	1	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	EGF--BBX	2	0	EGF	21671	chr4:110909865:+	BBX	49689	chr3:107429299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	EGF->Oncogene{Bushman},chr4:110834040-110933422:+,epidermal_growth_factor,BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	FXYD6--GTF2IRD1	2	0	FXYD6	9689	chr11:117710496:-	GTF2IRD1	26071	chr7:73938401:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	FXYD6->FXYD_domain_containing_ion_transport_regulator_6,chr11:117707693-117748201:-,GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	IPO11--MAP3K1	2	0	IPO11	9994	chr5:61747760:+	MAP3K1	46205	chr5:56152427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	IPO11->chr5:61699799-61924409:+,importin_11,MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	IPO9--WDR11	2	0	IPO9	9351	chr1:201824051:+	WDR11	66905	chr10:122668068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	IPO9->chr1:201798269-201853422:+,importin_9,WDR11->Oncogene{Bushman},WD_repeat_domain_11,chr10:122610687-122669036:+	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MIR181A2HG--MAP7D1	2	0	MIR181A2HG	1275	chr9:127421020:+	MAP7D1	8375	chr1:36636572:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	MIR181A2HG->MIR181A2_host_gene,chr9:127420746-127460910:+,MAP7D1->MAP7_domain_containing_1,chr1:36621180-36646450:+	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	U2AF1--TUBGCP6	2	0	U2AF1	1137	chr21:44527561:-	TUBGCP6	30839	chr22:50658444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-,TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	WRN--FBXO38	2	0	WRN	1173	chr8:30891489:+	FBXO38	61129	chr5:147812987:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+,FBXO38->F-box_protein_38,chr5:147763498-147822399:+	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NCR3LG1--SERGEF	1	1	NCR3LG1	4004	chr11:17388894:+	SERGEF	17372	chr11:18029623:-	ONLY_REF_SPLICE	YES	31	12	0.06	0.14	0.0105	0.0105	NCR3LG1->chr11:17373273-17398888:+,natural_killer_cell_cytotoxicity_receptor_3_ligand_1,SERGEF->chr11:17809595-18034709:-,secretion_regulating_guanine_nucleotide_exchange_factor	NH6_AUTONOMIC_GANGLIA	0.06	0.14	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	SLAIN1--SCEL	1	1	SLAIN1	9045	chr13:78320990:+	SCEL	37895	chr13:78187026:+	ONLY_REF_SPLICE	NO	28	0	0.07	1	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[52625],SLAIN1->SLAIN_motif_family_member_1,chr13:78272023-78338377:+,SCEL->chr13:78109809-78219398:+,sciellin	NH6_AUTONOMIC_GANGLIA	0.07	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000203
HEC151_ENDOMETRIUM	TMEM178B--MRPS33	35	12	TMEM178B	1461	chr7:140774492:+	MRPS33	21482	chr7:140706335:-	ONLY_REF_SPLICE	YES	38	179	0.55	0.21	0.3843	0.1317	LOCAL_INVERSION:+:-:[59004],TMEM178B->chr7:140774032-141180180:+,transmembrane_protein_178B,MRPS33->chr7:140705854-140715028:-,mitochondrial_ribosomal_protein_S33	HEC151_ENDOMETRIUM	0.21	0.55	0.516	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	TMEM178B--MRPS33	29	30	TMEM178B	1461	chr7:140774492:+	MRPS33	19496	chr7:140710460:-	ONLY_REF_SPLICE	YES	38	29	0.61	0.67	0.3184	0.3294	LOCAL_INVERSION:+:-:[59004],TMEM178B->chr7:140774032-141180180:+,transmembrane_protein_178B,MRPS33->chr7:140705854-140715028:-,mitochondrial_ribosomal_protein_S33	HEC151_ENDOMETRIUM	0.61	0.67	0.6478	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	SLC12A4--DPEP2	13	5	SLC12A4	9427	chr16:67988546:-	DPEP2	31131	chr16:68021663:-	ONLY_REF_SPLICE	YES	45	2	0.29	0.9	0.1427	0.0549	LOCAL_REARRANGEMENT:-:[17793],SLC12A4->chr16:67977377-68003504:-,solute_carrier_family_12_member_4,DPEP2->chr16:68021297-68034489:-,dipeptidase_2	HEC151_ENDOMETRIUM	0.29	0.9	0.1976	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	TMEM178B--MRPS33	7	21	TMEM178B	1461	chr7:140774492:+	MRPS33	19539	chr7:140710417:-	ONLY_REF_SPLICE	YES	38	28	0.42	0.5	0.0769	0.2306	LOCAL_INVERSION:+:-:[59004],TMEM178B->chr7:140774032-141180180:+,transmembrane_protein_178B,MRPS33->chr7:140705854-140715028:-,mitochondrial_ribosomal_protein_S33	HEC151_ENDOMETRIUM	0.42	0.5	0.3075	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	SPP1--MTATP6P1	10	0	SPP1	6793	chr4:88903711:+	MTATP6P1	10956	chr1:569387:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1098	0	SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HEC151_ENDOMETRIUM	1	1	0.1098	TRUE	0	0	0	3	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	LMNB2--AC005624.2	8	3	LMNB2	1327	chr19:2456668:-	AC005624.2	17630	chr19:2459098:-	ONLY_REF_SPLICE	YES	111	1	0.09	0.92	0.0878	0.0329	LOCAL_REARRANGEMENT:-:[1939],LMNB2->chr19:2427636-2456994:-,lamin_B2,AC005624.2->chr19:2458933-2462183:-	HEC151_ENDOMETRIUM	0.09	0.92	0.1207	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	SLC12A4--DPEP2	6	7	SLC12A4	9427	chr16:67988546:-	DPEP2	30904	chr16:68021890:-	ONLY_REF_SPLICE	YES	45	0	0.22	1	0.0659	0.0769	LOCAL_REARRANGEMENT:-:[17793],SLC12A4->chr16:67977377-68003504:-,solute_carrier_family_12_member_4,DPEP2->chr16:68021297-68034489:-,dipeptidase_2	HEC151_ENDOMETRIUM	0.22	1	0.1428	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	MTND4P12--MTND2P28	4	5	MTND4P12	1984	chr5:134262743:-	MTND2P28	5413	chr1:565055:+	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0439	0.0549	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HEC151_ENDOMETRIUM	0.6	1	0.0988	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	MTND4P12--MTND2P28	5	0	MTND4P12	1244	chr5:134263483:-	MTND2P28	6170	chr1:565812:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HEC151_ENDOMETRIUM	1	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	MTND4P12--hsa-mir-6723	3	7	MTND4P12	1988	chr5:134262739:-	hsa-mir-6723	5406	chr1:566482:+	INCL_NON_REF_SPLICE	YES	7	0	0.59	1	0.0329	0.0769	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0.59	1	0.1098	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	AL136376.1--RPS28	3	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HEC151_ENDOMETRIUM	1	1	0.0329	TRUE	0	0	0	12	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	RCC1--GNAS	3	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HEC151_ENDOMETRIUM	1	1	0.0329	TRUE	0	3	0	13	2	TRUE	ACH-000972
HEC151_ENDOMETRIUM	NAE1--CCT6P1	2	0	NAE1	1142	chr16:66907018:-	CCT6P1	30481	chr7:65225411:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	NAE1->NEDD8_activating_enzyme_E1_subunit_1,chr16:66836778-66907159:-,CCT6P1->chaperonin_containing_TCP1_subunit_6_pseudogene_1,chr7:65216129-65228341:+	HEC151_ENDOMETRIUM	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	NPM1--PUS1	2	0	NPM1	5819	chr5:170819982:+	PUS1	18273	chr12:132416720:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),PUS1->chr12:132413745-132428406:+,pseudouridylate_synthase_1	HEC151_ENDOMETRIUM	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	HEC151_ENDOMETRIUM	1	1	0.022	TRUE	0	0	0	18	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	UBE2V2--MCM4	2	0	UBE2V2	1071	chr8:48921030:+	MCM4	16151	chr8:48873691:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	LOCAL_REARRANGEMENT:+:[30240],UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2,MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4	HEC151_ENDOMETRIUM	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000972
RERFGC1B_STOMACH	VTI1A--GFRA1	608	249	VTI1A	11748	chr10:114298089:+	GFRA1	35034	chr10:117825137:-	ONLY_REF_SPLICE	YES	52	1	0.94	1	6.8002	2.785	VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,GFRA1->GDNF_family_receptor_alpha_1,chr10:117816444-118032979:-	RERFGC1B_STOMACH	0.94	1	9.5852	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	UACA--ARID1A	93	42	UACA	23836	chr15:70957001:-	ARID1A	45461	chr1:27094281:+	ONLY_REF_SPLICE	YES	110	24	0.55	0.85	1.0402	0.4698	{Klijn_CCL:Stomach=1},UACA->chr15:70946893-71055932:-,uveal_autoantigen_with_coiled-coil_domains_and_ankyrin_repeats,ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+	RERFGC1B_STOMACH	0.55	0.85	1.51	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	WDFY2--SERPINE3	69	18	WDFY2	2385	chr13:52234799:+	SERPINE3	27498	chr13:51929179:+	ONLY_REF_SPLICE	YES	9	0	0.91	1	0.7717	0.2013	{Klijn_CCL:Stomach=1},WDFY2->WD_repeat_and_FYVE_domain_containing_2,chr13:52158644-52336171:+,SERPINE3->chr13:51909909-51938871:+,serpin_family_E_member_3	RERFGC1B_STOMACH	0.91	1	0.973	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ZNF431--GSS	60	29	ZNF431	2256	chr19:21326446:+	GSS	17825	chr20:33539663:-	ONLY_REF_SPLICE	YES	8	0	0.92	1	0.6711	0.3244	ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431,GSS->chr20:33516236-33543620:-,glutathione_synthetase	RERFGC1B_STOMACH	0.92	1	0.9955	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MYOF--RP11-702H23.4	52	32	MYOF	4553	chr10:95211807:-	RP11-702H23.4	62789	chr11:74139378:+	ONLY_REF_SPLICE	YES	120	0	0.41	1	0.5816	0.3579	MYOF->chr10:95066186-95242074:-,myoferlin,RP11-702H23.4->chr11:74108594-74196787:+	RERFGC1B_STOMACH	0.41	1	0.9395	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	WDFY2--SERPINE3	57	9	WDFY2	2385	chr13:52234799:+	SERPINE3	28599	chr13:51935414:+	ONLY_REF_SPLICE	YES	9	2	0.88	0.97	0.6375	0.1007	{Klijn_CCL:Stomach=1},WDFY2->WD_repeat_and_FYVE_domain_containing_2,chr13:52158644-52336171:+,SERPINE3->chr13:51909909-51938871:+,serpin_family_E_member_3	RERFGC1B_STOMACH	0.88	0.97	0.7382	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MYOF--RP11-702H23.4	50	32	MYOF	4553	chr10:95211807:-	RP11-702H23.4	62786	chr11:74139375:+	INCL_NON_REF_SPLICE	YES	120	0	0.41	1	0.5592	0.3579	MYOF->chr10:95066186-95242074:-,myoferlin,RP11-702H23.4->chr11:74108594-74196787:+	RERFGC1B_STOMACH	0.41	1	0.9171	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PACSIN2--MCAT	54	11	PACSIN2	1125	chr22:43411027:-	MCAT	31207	chr22:43529492:-	ONLY_REF_SPLICE	YES	41	27	0.61	0.71	0.604	0.123	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,MCAT->chr22:43528212-43539400:-,malonyl-CoA-acyl_carrier_protein_transacylase	RERFGC1B_STOMACH	0.61	0.71	0.727	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PSEN1--RBM25	50	17	PSEN1	1166	chr14:73603291:+	RBM25	34817	chr14:73543027:+	ONLY_REF_SPLICE	YES	27	168	0.71	0.29	0.5592	0.1901	LOCAL_REARRANGEMENT:+:[15004],PSEN1->chr14:73603126-73690399:+,presenilin_1,RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+	RERFGC1B_STOMACH	0.29	0.71	0.7493	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	VTI1A--UBE2D1	47	15	VTI1A	6899	chr10:114224416:+	UBE2D1	25803	chr10:60123369:+	ONLY_REF_SPLICE	YES	183	102	0.25	0.38	0.5257	0.1678	{Klijn_CCL:Stomach=1},VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,UBE2D1->chr10:60094735-60130513:+,ubiquitin_conjugating_enzyme_E2_D1	RERFGC1B_STOMACH	0.25	0.38	0.6935	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PRPF40B--COQ5	48	7	PRPF40B	10225	chr12:50017376:+	COQ5	33625	chr12:120947926:-	ONLY_REF_SPLICE	YES	4	99	0.93	0.36	0.5369	0.0783	PRPF40B->chr12:49962001-50038449:+,pre-mRNA_processing_factor_40_homolog_B,COQ5->chr12:120941077-120972237:-,coenzyme_Q5,_methyltransferase	RERFGC1B_STOMACH	0.36	0.93	0.6152	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	LINC00664--UPF1	45	18	LINC00664	12167	chr19:21681151:+	UPF1	22026	chr19:18956789:+	ONLY_REF_SPLICE	YES	5	3	0.93	0.95	0.5033	0.2013	LINC00664->chr19:21666176-21686040:+,long_intergenic_non-protein_coding_RNA_664,UPF1->UPF1,_RNA_helicase_and_ATPase,chr19:18942747-18979045:+	RERFGC1B_STOMACH	0.93	0.95	0.7046	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	CROCCP2--ABCC1	44	1	CROCCP2	1038	chr1:16971141:-	ABCC1	18554	chr16:16101673:+	ONLY_REF_SPLICE	YES	0	3	1	0.94	0.4921	0.0112	CROCCP2->chr1:16944751-16971178:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_2,ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+	RERFGC1B_STOMACH	0.94	1	0.5033	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	SMARCC2--ANKRD52	40	15	SMARCC2	2337	chr12:56580971:-	ANKRD52	31767	chr12:56642599:-	INCL_NON_REF_SPLICE	YES	124	63	0.31	0.47	0.4474	0.1678	LOCAL_REARRANGEMENT:-:[48240],SMARCC2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_2,chr12:56556767-56583351:-,ANKRD52->ankyrin_repeat_domain_52,chr12:56631591-56652175:-	RERFGC1B_STOMACH	0.31	0.47	0.6152	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PACSIN2--MCAT	36	18	PACSIN2	1125	chr22:43411027:-	MCAT	29989	chr22:43533304:-	ONLY_REF_SPLICE	YES	41	27	0.57	0.67	0.4026	0.2013	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,MCAT->chr22:43528212-43539400:-,malonyl-CoA-acyl_carrier_protein_transacylase	RERFGC1B_STOMACH	0.57	0.67	0.6039	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	QRICH1--ACSBG1	36	16	QRICH1	5617	chr3:49114142:-	ACSBG1	25504	chr15:78500444:-	ONLY_REF_SPLICE	YES	86	1	0.38	0.98	0.4026	0.179	QRICH1->chr3:49067140-49131796:-,glutamine_rich_1,ACSBG1->acyl-CoA_synthetase_bubblegum_family_member_1,chr15:78459810-78538030:-	RERFGC1B_STOMACH	0.38	0.98	0.5816	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	DCAF10--CENPP	31	15	DCAF10	3018	chr9:37819398:+	CENPP	24173	chr9:95142045:+	ONLY_REF_SPLICE	YES	11	10	0.81	0.82	0.3467	0.1678	{Klijn_CCL:Stomach=1},DCAF10->DDB1_and_CUL4_associated_factor_10,chr9:37800499-37867663:+,CENPP->centromere_protein_P,chr9:95087766-95382815:+	RERFGC1B_STOMACH	0.81	0.82	0.5145	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ZNF429--UPF1	31	10	ZNF429	2192	chr19:21681151:+	UPF1	21503	chr19:18956789:+	ONLY_REF_SPLICE	YES	0	3	1	0.93	0.3467	0.1118	ZNF429->chr19:21679484-21739072:+,zinc_finger_protein_429,UPF1->UPF1,_RNA_helicase_and_ATPase,chr19:18942747-18979045:+	RERFGC1B_STOMACH	0.93	1	0.4585	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	GBF1--WBP1L	30	7	GBF1	9564	chr10:104118486:+	WBP1L	33839	chr10:104557750:+	ONLY_REF_SPLICE	YES	48	41	0.44	0.47	0.3355	0.0783	GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1,WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+	RERFGC1B_STOMACH	0.44	0.47	0.4138	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	SMARCC2--ANKRD52	23	26	SMARCC2	2829	chr12:56580479:-	ANKRD52	31767	chr12:56642599:-	INCL_NON_REF_SPLICE	YES	133	63	0.27	0.44	0.2572	0.2908	LOCAL_REARRANGEMENT:-:[48240],SMARCC2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_2,chr12:56556767-56583351:-,ANKRD52->ankyrin_repeat_domain_52,chr12:56631591-56652175:-	RERFGC1B_STOMACH	0.27	0.44	0.548	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ZNF365--GPR158-AS1	28	5	ZNF365	1267	chr10:64134217:+	GPR158-AS1	28945	chr10:25448832:-	ONLY_REF_SPLICE	YES	1	1	0.97	0.97	0.3132	0.0559	ZNF365->chr10:64133951-64431771:+,zinc_finger_protein_365,GPR158-AS1->GPR158_antisense_RNA_1,chr10:25447001-25465205:-	RERFGC1B_STOMACH	0.97	0.97	0.3691	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	SEPT9--SEC14L1	24	1	SEPT9	1986	chr17:75277636:+	SEC14L1	55433	chr17:75138728:+	ONLY_REF_SPLICE	YES	1	76	0.96	0.25	0.2684	0.0112	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[63472],SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,SEC14L1->SEC14_like_lipid_binding_1,chr17:75082798-75213179:+	RERFGC1B_STOMACH	0.25	0.96	0.2796	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PAIP1--TEK	20	6	PAIP1	2929	chr5:43555932:-	TEK	18109	chr9:27157829:+	ONLY_REF_SPLICE	YES	105	0	0.2	1	0.2237	0.0671	PAIP1->chr5:43526369-43557860:-,poly(A)_binding_protein_interacting_protein_1,TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+	RERFGC1B_STOMACH	0.2	1	0.2908	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MYOF--RP11-632K5.2	18	9	MYOF	4553	chr10:95211807:-	RP11-632K5.2	62538	chr11:74126892:+	ONLY_REF_SPLICE	YES	120	0	0.18	1	0.2013	0.1007	MYOF->chr10:95066186-95242074:-,myoferlin,RP11-632K5.2->chr11:74120105-74127424:+	RERFGC1B_STOMACH	0.18	1	0.302	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	FBXL20--CHRDL2	16	12	FBXL20	2163	chr17:37557614:-	CHRDL2	24821	chr11:74429877:-	ONLY_REF_SPLICE	YES	5	2	0.85	0.93	0.179	0.1342	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	RERFGC1B_STOMACH	0.85	0.93	0.3132	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RTKN2--ACSS2	18	3	RTKN2	11553	chr10:63976877:-	ACSS2	44057	chr20:33514680:+	ONLY_REF_SPLICE	YES	18	83	0.54	0.2	0.2013	0.0336	RTKN2->chr10:63942794-64028466:-,rhotekin_2,ACSS2->acyl-CoA_synthetase_short-chain_family_member_2,chr20:33459949-33515769:+	RERFGC1B_STOMACH	0.2	0.54	0.2349	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	VTI1A--UBE2D1	16	11	VTI1A	6899	chr10:114224416:+	UBE2D1	26965	chr10:60124531:+	ONLY_REF_SPLICE	YES	183	87	0.13	0.24	0.179	0.123	{Klijn_CCL:Stomach=1},VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,UBE2D1->chr10:60094735-60130513:+,ubiquitin_conjugating_enzyme_E2_D1	RERFGC1B_STOMACH	0.13	0.24	0.302	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	UACA--ARID1A	15	14	UACA	23836	chr15:70957001:-	ARID1A	46673	chr1:27097610:+	ONLY_REF_SPLICE	YES	110	39	0.21	0.43	0.1678	0.1566	{Klijn_CCL:Stomach=1},UACA->chr15:70946893-71055932:-,uveal_autoantigen_with_coiled-coil_domains_and_ankyrin_repeats,ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+	RERFGC1B_STOMACH	0.21	0.43	0.3244	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	GBF1--WBP1L	13	16	GBF1	11955	chr10:104120877:+	WBP1L	33839	chr10:104557750:+	ONLY_REF_SPLICE	YES	38	41	0.43	0.41	0.1454	0.179	GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1,WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+	RERFGC1B_STOMACH	0.41	0.43	0.3244	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-420A23.1--LARP1B	14	3	RP11-420A23.1	3530	chr4:129224190:+	LARP1B	39467	chr4:129120594:+	ONLY_REF_SPLICE	YES	0	7	1	0.71	0.1566	0.0336	LOCAL_REARRANGEMENT:+:[69820],RP11-420A23.1->chr4:129213906-129440549:+,LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+	RERFGC1B_STOMACH	0.71	1	0.1902	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	FBXL20--CHRDL2	13	1	FBXL20	1351	chr17:37558426:-	CHRDL2	24821	chr11:74429877:-	ONLY_REF_SPLICE	YES	2	2	0.88	0.88	0.1454	0.0112	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	RERFGC1B_STOMACH	0.88	0.88	0.1566	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	VTI1A--UBE2D1	11	7	VTI1A	6899	chr10:114224416:+	UBE2D1	28071	chr10:60127683:+	ONLY_REF_SPLICE	YES	183	112	0.09	0.14	0.123	0.0783	{Klijn_CCL:Stomach=1},VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,UBE2D1->chr10:60094735-60130513:+,ubiquitin_conjugating_enzyme_E2_D1	RERFGC1B_STOMACH	0.09	0.14	0.2013	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	CBLC--BCL3	8	10	CBLC	7355	chr19:45295771:+	BCL3	17956	chr19:45259489:+	ONLY_REF_SPLICE	YES	123	19	0.13	0.49	0.0895	0.1118	LOCAL_REARRANGEMENT:+:[17825],CBLC->Cbl_proto-oncogene_C,Oncogene{Bushman},chr19:45281126-45303891:+,BCL3->B-cell_CLL/lymphoma_3,Oncogene{Bushman},chr19:45250962-45263301:+	RERFGC1B_STOMACH	0.13	0.49	0.2013	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	WNK2--RP11-613M10.9	9	3	WNK2	1695	chr9:95947892:+	RP11-613M10.9	43326	chr9:37974834:-	ONLY_REF_SPLICE	YES	2	18	0.86	0.4	0.1007	0.0336	WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+,RP11-613M10.9->chr9:37588410-38068684:-	RERFGC1B_STOMACH	0.4	0.86	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PSEN1--RBM25	6	14	PSEN1	1162	chr14:73603287:+	RBM25	34817	chr14:73543027:+	ONLY_REF_SPLICE	YES	22	168	0.48	0.11	0.0671	0.1566	LOCAL_REARRANGEMENT:+:[15004],PSEN1->chr14:73603126-73690399:+,presenilin_1,RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+	RERFGC1B_STOMACH	0.11	0.48	0.2237	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	CORO7--ANKS3	8	4	CORO7	7741	chr16:4462357:-	ANKS3	41195	chr16:4752243:-	ONLY_REF_SPLICE	YES	18	17	0.4	0.41	0.0895	0.0447	CORO7->chr16:4404543-4475706:-,coronin_7,ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-	RERFGC1B_STOMACH	0.4	0.41	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	EPB41--SERINC2	8	4	EPB41	8280	chr1:29323831:+	SERINC2	45708	chr1:31905814:+	ONLY_REF_SPLICE	YES	28	89	0.3	0.12	0.0895	0.0447	EPB41->chr1:29213603-29446553:+,erythrocyte_membrane_protein_band_4.1,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	RERFGC1B_STOMACH	0.12	0.3	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	IMMP2L--LAMB1	8	4	IMMP2L	4976	chr7:111127294:-	LAMB1	29214	chr7:107613516:-	ONLY_REF_SPLICE	YES	9	289	0.57	0.04	0.0895	0.0447	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1	RERFGC1B_STOMACH	0.04	0.57	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	FBXL20--CHRDL2	8	1	FBXL20	1351	chr17:37558426:-	CHRDL2	25934	chr11:74424524:-	ONLY_REF_SPLICE	YES	2	11	0.82	0.45	0.0895	0.0112	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	RERFGC1B_STOMACH	0.45	0.82	0.1007	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	GBF1--WBP1L	5	12	GBF1	11230	chr10:104120152:+	WBP1L	33839	chr10:104557750:+	ONLY_REF_SPLICE	YES	48	41	0.26	0.29	0.0559	0.1342	GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1,WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+	RERFGC1B_STOMACH	0.26	0.29	0.1901	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	SLC35G1--IKZF3	6	8	SLC35G1	1239	chr10:95653968:+	IKZF3	20768	chr17:37949186:-	ONLY_REF_SPLICE	YES	35	0	0.29	1	0.0671	0.0895	SLC35G1->chr10:95653730-95715819:+,solute_carrier_family_35_member_G1,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	RERFGC1B_STOMACH	0.29	1	0.1566	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-304L19.1--C3orf62	7	3	RP11-304L19.1	1179	chr16:2141615:+	C3orf62	9886	chr3:49311573:-	ONLY_REF_SPLICE	YES	0	11	1	0.48	0.0783	0.0336	RP11-304L19.1->chr16:2141437-2145426:+,C3orf62->chr3:49306035-49315342:-,chromosome_3_open_reading_frame_62	RERFGC1B_STOMACH	0.48	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PACSIN2--TTLL1	7	2	PACSIN2	1125	chr22:43411027:-	TTLL1	28252	chr22:43475992:-	ONLY_REF_SPLICE	YES	41	7	0.18	0.56	0.0783	0.0224	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[24371],PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,TTLL1->chr22:43435522-43485434:-,tubulin_tyrosine_ligase_like_1	RERFGC1B_STOMACH	0.18	0.56	0.1007	TRUE	0	1	0	1	1	TRUE	ACH-000144
RERFGC1B_STOMACH	SLC35G1--IKZF3	6	6	SLC35G1	1188	chr10:95653917:+	IKZF3	20768	chr17:37949186:-	ONLY_REF_SPLICE	YES	33	0	0.27	1	0.0671	0.0671	SLC35G1->chr10:95653730-95715819:+,solute_carrier_family_35_member_G1,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	RERFGC1B_STOMACH	0.27	1	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	IPMK--PRKG1	5	7	IPMK	1513	chr10:60027182:-	PRKG1	23923	chr10:53814244:+	ONLY_REF_SPLICE	YES	16	0	0.43	1	0.0559	0.0783	IPMK->chr10:59951278-60027694:-,inositol_polyphosphate_multikinase,PRKG1->chr10:52750945-54058110:+,protein_kinase,_cGMP-dependent,_type_I	RERFGC1B_STOMACH	0.43	1	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	CROCCP2--ABCC1	6	2	CROCCP2	2156	chr1:16969523:-	ABCC1	18554	chr16:16101673:+	ONLY_REF_SPLICE	YES	24	3	0.25	0.73	0.0671	0.0224	CROCCP2->chr1:16944751-16971178:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_2,ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+	RERFGC1B_STOMACH	0.25	0.73	0.0895	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	NOS1AP--ATF6	6	1	NOS1AP	2581	chr1:162124266:+	ATF6	32094	chr1:161789423:+	ONLY_REF_SPLICE	YES	2	83	0.78	0.08	0.0671	0.0112	NOS1AP->chr1:162039564-162353321:+,nitric_oxide_synthase_1_adaptor_protein,ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+	RERFGC1B_STOMACH	0.08	0.78	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	NUMB--HEATR4	5	5	NUMB	7519	chr14:73876645:-	HEATR4	36587	chr14:73989928:-	ONLY_REF_SPLICE	YES	114	0	0.08	1	0.0559	0.0559	LOCAL_REARRANGEMENT:-:[14841],NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-,HEATR4->HEAT_repeat_containing_4,chr14:73945189-74025651:-	RERFGC1B_STOMACH	0.08	1	0.1118	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	IMMP2L--LAMB1	4	8	IMMP2L	7385	chr7:111032858:-	LAMB1	29214	chr7:107613516:-	ONLY_REF_SPLICE	YES	12	289	0.5	0.04	0.0447	0.0895	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1	RERFGC1B_STOMACH	0.04	0.5	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MED12L--KLHL3	6	0	MED12L	18793	chr3:150959656:+	KLHL3	67899	chr5:137013343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like,KLHL3->chr5:136953189-137071779:-,kelch_like_family_member_3	RERFGC1B_STOMACH	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MPP5--PLEKHH1	6	0	MPP5	1425	chr14:67708250:+	PLEKHH1	26844	chr14:68008551:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5,PLEKHH1->chr14:68000018-68056329:+,pleckstrin_homology,_MyTH4_and_FERM_domain_containing_H1	RERFGC1B_STOMACH	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MYOF--RP11-632K5.2	5	3	MYOF	4553	chr10:95211807:-	RP11-632K5.2	62798	chr11:74127152:+	INCL_NON_REF_SPLICE	YES	120	8	0.06	0.5	0.0559	0.0336	MYOF->chr10:95066186-95242074:-,myoferlin,RP11-632K5.2->chr11:74120105-74127424:+	RERFGC1B_STOMACH	0.06	0.5	0.0895	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MYOF--RP11-702H23.4	5	1	MYOF	4553	chr10:95211807:-	RP11-702H23.4	64022	chr11:74195222:+	ONLY_REF_SPLICE	YES	120	0	0.05	1	0.0559	0.0112	MYOF->chr10:95066186-95242074:-,myoferlin,RP11-702H23.4->chr11:74108594-74196787:+	RERFGC1B_STOMACH	0.05	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PSEN1--RBM25	1	17	PSEN1	1806	chr14:73603931:+	RBM25	34817	chr14:73543027:+	ONLY_REF_SPLICE	YES	50	168	0.26	0.1	0.0112	0.1901	LOCAL_REARRANGEMENT:+:[15004],PSEN1->chr14:73603126-73690399:+,presenilin_1,RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+	RERFGC1B_STOMACH	0.1	0.26	0.2013	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-420A23.1--LARP1B	5	1	RP11-420A23.1	1372	chr4:129214277:+	LARP1B	39467	chr4:129120594:+	ONLY_REF_SPLICE	YES	1	7	0.86	0.46	0.0559	0.0112	LOCAL_REARRANGEMENT:+:[69820],RP11-420A23.1->chr4:129213906-129440549:+,LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+	RERFGC1B_STOMACH	0.46	0.86	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	FBXL20--CHRDL2	3	8	FBXL20	2163	chr17:37557614:-	CHRDL2	25934	chr11:74424524:-	ONLY_REF_SPLICE	YES	5	11	0.69	0.5	0.0336	0.0895	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	RERFGC1B_STOMACH	0.5	0.69	0.1231	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	LIN7A--SCARB1	4	4	LIN7A	2404	chr12:81283030:-	SCARB1	24720	chr12:125302253:-	ONLY_REF_SPLICE	YES	4	76	0.67	0.1	0.0447	0.0447	LIN7A->chr12:81186299-81331704:-,lin-7_homolog_A,_crumbs_cell_polarity_complex_component,SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1	RERFGC1B_STOMACH	0.1	0.67	0.0894	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-131N11.4--RTKN2	4	2	RP11-131N11.4	1087	chr10:62494186:+	RTKN2	18051	chr10:63964781:-	ONLY_REF_SPLICE	YES	0	18	1	0.25	0.0447	0.0224	RP11-131N11.4->chr10:62494100-62501586:+,RTKN2->chr10:63942794-64028466:-,rhotekin_2	RERFGC1B_STOMACH	0.25	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RARS2--C6orf165	4	1	RARS2	20052	chr6:88224146:-	C6orf165	41955	chr6:88210226:+	INCL_NON_REF_SPLICE	YES	0	18	1	0.22	0.0447	0.0112	LOCAL_INVERSION:-:+:[2744],RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-,C6orf165->chr6:88117730-88221352:+	RERFGC1B_STOMACH	0.22	1	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ROR2--CR848007.2	4	1	ROR2	9887	chr9:94518353:-	CR848007.2	28034	chr9:44059515:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0447	0.0112	ROR2->Oncogene{Bushman},chr9:94325373-94712444:-,receptor_tyrosine_kinase_like_orphan_receptor_2,CR848007.2->chr9:44051024-44069881:-	RERFGC1B_STOMACH	0.71	1	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PRPF6--PRIM2	4	0	PRPF6	10113	chr20:62641671:+	PRIM2	31141	chr6:57244699:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	PRPF6->chr20:62612488-62664453:+,pre-mRNA_processing_factor_6,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	RERFGC1B_STOMACH	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	SH3GL2--RP11-135D11.2	4	0	SH3GL2	1206	chr9:17579285:+	RP11-135D11.2	18947	chr10:61354710:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+,RP11-135D11.2->chr10:61348908-61371006:+	RERFGC1B_STOMACH	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ZNF462--RP11-308N19.1	4	0	ZNF462	1259	chr9:109625636:+	RP11-308N19.1	34027	chr9:109320753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	ZNF462->chr9:109625378-109775915:+,zinc_finger_protein_462,RP11-308N19.1->chr9:109040673-109367076:+	RERFGC1B_STOMACH	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	IMMP2L--LAMB1	1	10	IMMP2L	9529	chr7:111030627:-	LAMB1	29214	chr7:107613516:-	ONLY_REF_SPLICE	YES	9	289	0.55	0.04	0.0112	0.1118	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1	RERFGC1B_STOMACH	0.04	0.55	0.123	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PSEN1--RBM25	1	10	PSEN1	1166	chr14:73603291:+	RBM25	35867	chr14:73544077:+	ONLY_REF_SPLICE	NO	27	173	0.29	0.06	0.0112	0.1118	LOCAL_REARRANGEMENT:+:[15004],PSEN1->chr14:73603126-73690399:+,presenilin_1,RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+	RERFGC1B_STOMACH	0.06	0.29	0.123	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	DCAF10--CENPP	1	9	DCAF10	3018	chr9:37819398:+	CENPP	27292	chr9:95373596:+	ONLY_REF_SPLICE	NO	11	14	0.48	0.42	0.0112	0.1007	{Klijn_CCL:Stomach=1},DCAF10->DDB1_and_CUL4_associated_factor_10,chr9:37800499-37867663:+,CENPP->centromere_protein_P,chr9:95087766-95382815:+	RERFGC1B_STOMACH	0.42	0.48	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PRPF6--PRIM2	3	1	PRPF6	11298	chr20:62642856:+	PRIM2	31141	chr6:57244699:+	ONLY_REF_SPLICE	YES	105	23	0.04	0.15	0.0336	0.0112	PRPF6->chr20:62612488-62664453:+,pre-mRNA_processing_factor_6,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	RERFGC1B_STOMACH	0.04	0.15	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ZNF431--GSS	2	5	ZNF431	1163	chr19:21324989:+	GSS	17825	chr20:33539663:-	ONLY_REF_SPLICE	YES	9	0	0.44	1	0.0224	0.0559	ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431,GSS->chr20:33516236-33543620:-,glutathione_synthetase	RERFGC1B_STOMACH	0.44	1	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ZNF431--GSS	3	1	ZNF431	1110	chr19:21324936:+	GSS	17825	chr20:33539663:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0336	0.0112	ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431,GSS->chr20:33516236-33543620:-,glutathione_synthetase	RERFGC1B_STOMACH	0.8	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	FBRSL1--IGF2	3	0	FBRSL1	16112	chr12:133148005:+	IGF2	38478	chr11:2153034:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ANK3--SLC24A3	2	2	ANK3	2267	chr10:62374944:-	SLC24A3	76967	chr20:19496132:+	ONLY_REF_SPLICE	YES	36	12	0.1	0.25	0.0224	0.0224	ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-,SLC24A3->chr20:19193290-19703581:+,solute_carrier_family_24_member_3	RERFGC1B_STOMACH	0.1	0.25	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-6N13.1--DCAF10	2	1	RP11-6N13.1	3400	chr5:104222559:-	DCAF10	20692	chr9:37842086:+	ONLY_REF_SPLICE	YES	0	10	1	0.23	0.0224	0.0112	RP11-6N13.1->chr5:103718999-104728671:-,DCAF10->DDB1_and_CUL4_associated_factor_10,chr9:37800499-37867663:+	RERFGC1B_STOMACH	0.23	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	WDFY2--SERPINE3	1	5	WDFY2	1317	chr13:52158960:+	SERPINE3	28599	chr13:51935414:+	ONLY_REF_SPLICE	YES	5	2	0.55	0.75	0.0112	0.0559	{Klijn_CCL:Stomach=1},WDFY2->WD_repeat_and_FYVE_domain_containing_2,chr13:52158644-52336171:+,SERPINE3->chr13:51909909-51938871:+,serpin_family_E_member_3	RERFGC1B_STOMACH	0.55	0.75	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	CACNB4--DNAJC10	2	0	CACNB4	1750	chr2:152954844:-	DNAJC10	46991	chr2:183616799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	CACNB4->calcium_voltage-gated_channel_auxiliary_subunit_beta_4,chr2:152689290-152955593:-,DNAJC10->DnaJ_heat_shock_protein_family_(Hsp40)_member_C10,chr2:183580999-183659191:+	RERFGC1B_STOMACH	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	LTN1--RWDD2B	2	0	LTN1	17873	chr21:30330708:-	RWDD2B	40867	chr21:30380942:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},LOCAL_REARRANGEMENT:-:[11435],LTN1->chr21:30300466-30365270:-,listerin_E3_ubiquitin_protein_ligase_1,RWDD2B->RWD_domain_containing_2B,chr21:30376705-30391699:-	RERFGC1B_STOMACH	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MED12L--KLHL3	2	0	MED12L	18793	chr3:150959656:+	KLHL3	67904	chr5:137013338:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like,KLHL3->chr5:136953189-137071779:-,kelch_like_family_member_3	RERFGC1B_STOMACH	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	CORO7--ANKS3	1	3	CORO7	7741	chr16:4462357:-	ANKS3	41200	chr16:4752238:-	ONLY_REF_SPLICE	YES	18	15	0.18	0.21	0.0112	0.0336	CORO7->chr16:4404543-4475706:-,coronin_7,ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-	RERFGC1B_STOMACH	0.18	0.21	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PAIP1--TEK	1	1	PAIP1	1940	chr5:43556921:-	TEK	18109	chr9:27157829:+	ONLY_REF_SPLICE	NO	26	0	0.07	1	0.0112	0.0112	PAIP1->chr5:43526369-43557860:-,poly(A)_binding_protein_interacting_protein_1,TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+	RERFGC1B_STOMACH	0.07	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000144
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYLPF	4933	1942	CBFB	1698	chr16:67063716:+	MYLPF	16324	chr16:30386143:+	ONLY_REF_SPLICE	YES	61	24	0.99	1	46.5425	18.3226	CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	64.8651	TRUE	0	0	0	2	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV19--TRAJ3	2373	44	TRAV19	1661	chr14:22476411:+	TRAJ3	4674	chr14:23012125:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	22.3891	0.4151	HGNC_GENEFAM,TRAV19->T_cell_receptor_alpha_variable_19,chr14:22475751-22476420:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	22.8042	TRUE	0	1	0	1	1	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV5--TRAJ3	2315	206	TRAV5	1523	chr14:22217984:+	TRAJ3	4532	chr14:23012125:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	21.8419	1.9436	HGNC_GENEFAM,TRAV5->T_cell_receptor_alpha_variable_5,chr14:22217462-22217989:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	23.7855	TRUE	0	1	0	1	1	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYLPF	103	1952	CBFB	1698	chr16:67063716:+	MYLPF	15140	chr16:30384199:+	ONLY_REF_SPLICE	YES	61	0	0.97	1	0.9718	18.417	CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	19.3888	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYLPF	11	1946	CBFB	2062	chr16:67064080:+	MYLPF	16324	chr16:30386143:+	ONLY_REF_SPLICE	YES	76	24	0.96	0.99	0.1038	18.3604	CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.99	18.4642	TRUE	0	0	0	2	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYLPF	2	1956	CBFB	2062	chr16:67064080:+	MYLPF	15140	chr16:30384199:+	ONLY_REF_SPLICE	YES	76	0	0.96	1	0.0189	18.4547	CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	18.4736	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYLPF	3	1519	CBFB	1698	chr16:67063716:+	MYLPF	17322	chr16:30387141:+	ONLY_REF_SPLICE	YES	61	38	0.96	0.98	0.0283	14.3317	CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.98	14.36	TRUE	0	0	0	2	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV19--TRAC	3	307	TRAV19	1166	chr14:22475916:+	TRAC	4671	chr14:23016447:+	ONLY_REF_SPLICE	YES	2067	0	0.13	1	0.0283	2.8965	HGNC_GENEFAM,TRAV19->T_cell_receptor_alpha_variable_19,chr14:22475751-22476420:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	2.9248	TRUE	0	2	0	1	2	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV5--TRAJ3	30	195	TRAV5	1518	chr14:22217979:+	TRAJ3	4527	chr14:23012120:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.283	1.8398	HGNC_GENEFAM,TRAV5->T_cell_receptor_alpha_variable_5,chr14:22217462-22217989:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.1228	TRUE	0	1	0	1	1	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4--DPY30	36	8	RTN4	6560	chr2:55276881:-	DPY30	36154	chr2:32095021:-	ONLY_REF_SPLICE	YES	21	1	0.68	0.98	0.3397	0.0755	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,DPY30->chr2:32092878-32264881:-,dpy-30,_histone_methyltransferase_complex_regulatory_subunit	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.98	0.4152	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4--DPY30	21	14	RTN4	12432	chr2:55252222:-	DPY30	36154	chr2:32095021:-	ONLY_REF_SPLICE	YES	59	1	0.37	0.97	0.1981	0.1321	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,DPY30->chr2:32092878-32264881:-,dpy-30,_histone_methyltransferase_complex_regulatory_subunit	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.97	0.3302	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAC	15	8	TRAV3	1222	chr14:22192181:+	TRAC	4610	chr14:23016447:+	ONLY_REF_SPLICE	YES	46	0	0.33	1	0.1415	0.0755	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.217	TRUE	1	20	1	2	20	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4--DPY30	10	18	RTN4	13795	chr2:55237223:-	DPY30	36154	chr2:32095021:-	ONLY_REF_SPLICE	YES	68	1	0.29	0.97	0.0943	0.1698	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,DPY30->chr2:32092878-32264881:-,dpy-30,_histone_methyltransferase_complex_regulatory_subunit	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.97	0.2641	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV19--TRAJ3	3	44	TRAV19	1664	chr14:22476414:+	TRAJ3	4677	chr14:23012128:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0.4151	HGNC_GENEFAM,TRAV19->T_cell_receptor_alpha_variable_19,chr14:22475751-22476420:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4434	TRUE	0	1	0	1	1	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4--DPY30	11	7	RTN4	6560	chr2:55276881:-	DPY30	37259	chr2:32093561:-	ONLY_REF_SPLICE	YES	21	5	0.46	0.78	0.1038	0.066	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,DPY30->chr2:32092878-32264881:-,dpy-30,_histone_methyltransferase_complex_regulatory_subunit	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.78	0.1698	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAC	6	12	TRAV3	1427	chr14:22192386:+	TRAC	4610	chr14:23016447:+	INCL_NON_REF_SPLICE	YES	25	0	0.42	1	0.0566	0.1132	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.1698	TRUE	1	20	1	2	20	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--KBTBD11	6	0	CPSF6	11046	chr12:69656342:+	KBTBD11	27212	chr8:1954711:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0566	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,KBTBD11->chr8:1922044-1955102:+,kelch_repeat_and_BTB_domain_containing_11	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0566	TRUE	0	1	0	4	1	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4--DPY30	2	11	RTN4	12432	chr2:55252222:-	DPY30	37259	chr2:32093561:-	ONLY_REF_SPLICE	YES	59	5	0.18	0.72	0.0189	0.1038	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,DPY30->chr2:32092878-32264881:-,dpy-30,_histone_methyltransferase_complex_regulatory_subunit	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.72	0.1227	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--MYO18B	3	0	CPSF6	11046	chr12:69656342:+	MYO18B	34050	chr22:26219472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,MYO18B->chr22:26138111-26427007:+,myosin_XVIIIB	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC11--CCDC57	3	0	DNAJC11	3659	chr1:6738454:-	CCDC57	59792	chr17:80059742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	DNAJC11->DnaJ_heat_shock_protein_family_(Hsp40)_member_C11,chr1:6694228-6761984:-,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--IVNS1ABP	3	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	1	4	0	16	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	3	0	NOC4L	2218	chr12:132630210:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	1	0	10	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	3	0	PTMA	6047	chr2:232576680:+	HMGB2	13656	chr4:174253239:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	4	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4--DPY30	1	8	RTN4	9354	chr2:55255300:-	DPY30	36154	chr2:32095021:-	ONLY_REF_SPLICE	YES	37	1	0.2	0.9	0.0094	0.0755	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,DPY30->chr2:32092878-32264881:-,dpy-30,_histone_methyltransferase_complex_regulatory_subunit	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.9	0.0849	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATL2--HNRNPLL	2	0	ATL2	6688	chr2:38570410:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	5	0	8	2	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCCIP--TIMM23	2	0	BCCIP	4322	chr10:127516207:+	TIMM23	24948	chr10:51592619:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	BCCIP->BRCA2_and_CDKN1A_interacting_protein,chr10:127512115-127542264:+,TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BFAR--ZBTB7A	2	0	BFAR	5380	chr16:14743830:+	ZBTB7A	18044	chr19:4055245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	BFAR->bifunctional_apoptosis_regulator,chr16:14726672-14763093:+,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PHF14	2	0	C17orf76-AS1	1593	chr17:16342728:+	PHF14	37718	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	C17orf76-AS1->chr17:16342136-16381992:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	5	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C22orf34--ZBED4	2	0	C22orf34	1138	chr22:50051053:-	ZBED4	21292	chr22:50276982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	C22orf34->chr22:49808176-50051190:-,chromosome_22_open_reading_frame_34,ZBED4->chr22:50247490-50283726:+,zinc_finger_BED-type_containing_4	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COX7C--COQ6	2	0	COX7C	1227	chr5:85913947:+	COQ6	13373	chr14:74425674:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	COX7C->chr5:85913721-85916779:+,cytochrome_c_oxidase_subunit_7C,COQ6->chr14:74416629-74430373:+,coenzyme_Q6,_monooxygenase	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSNK1G2--DAZAP1	2	0	CSNK1G2	1230	chr19:1941417:+	DAZAP1	20530	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	1	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIST1H2BD--CD1E	2	0	HIST1H2BD	1439	chr6:26158787:+	CD1E	9199	chr1:158326554:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	HIST1H2BD->chr6:26158349-26171577:+,histone_cluster_1,_H2bd,CD1E->CD1e_molecule,chr1:158323254-158327343:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNAS	2	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	3	0	13	2	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLTM--ALDOA	2	0	SLTM	7302	chr15:59204762:-	ALDOA	35214	chr16:30079967:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG3--RPLP0	2	0	SNHG3	1105	chr1:28832596:+	RPLP0	12687	chr12:120635265:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG8--HUWE1	2	0	SNHG8	1429	chr4:119200292:+	HUWE1	60895	chrX:53581881:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSHZ1--ZADH2	2	0	TSHZ1	2162	chr18:72923871:+	ZADH2	19481	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	LOCAL_INVERSION:+:-:[1407],TSHZ1->chr18:72922710-73001905:+,teashirt_zinc_finger_homeobox_1,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	2	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--RP11-218M22.1	2	0	ZNF738	7035	chr19:21558766:+	RP11-218M22.1	18338	chr12:753125:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,RP11-218M22.1->chr12:740057-772872:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
MKN7_STOMACH	MAP4--SHISA5	347	82	MAP4	1507	chr3:48130263:-	SHISA5	48619	chr3:48511242:-	ONLY_REF_SPLICE	YES	20	122	0.96	0.78	4.8157	1.138	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,SHISA5->chr3:48509197-48542259:-,shisa_family_member_5	MKN7_STOMACH	0.78	0.96	5.9537	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TOMM40--CEACAM19	123	86	TOMM40	4498	chr19:45397323:+	CEACAM19	15236	chr19:45175868:+	ONLY_REF_SPLICE	YES	351	26	0.37	0.89	1.707	1.1935	{Klijn_CCL:Stomach=1},TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	MKN7_STOMACH	0.37	0.89	2.9005	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	LAMA3--CARM1	106	71	LAMA3	45927	chr18:21462009:+	CARM1	88991	chr19:11024553:+	ONLY_REF_SPLICE	YES	1288	92	0.12	0.66	1.4711	0.9853	{Klijn_CCL:Stomach=1},LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MKN7_STOMACH	0.12	0.66	2.4564	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PDCD6--CCDC127	75	81	PDCD6	2152	chr5:272887:+	CCDC127	23436	chr5:206073:-	ONLY_REF_SPLICE	YES	597	102	0.21	0.6	1.0409	1.1241	{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[53406],PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,CCDC127->chr5:196986-218330:-,coiled-coil_domain_containing_127	MKN7_STOMACH	0.21	0.6	2.165	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FUT8--FNTB	72	85	FUT8	5815	chr14:65922436:+	FNTB	44544	chr14:65519956:+	ONLY_REF_SPLICE	YES	130	55	0.55	0.74	0.9992	1.1796	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta	MKN7_STOMACH	0.55	0.74	2.1788	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FYTTD1--HOXA-AS2	80	18	FYTTD1	8703	chr3:197497115:+	HOXA-AS2	29111	chr7:27161538:+	ONLY_REF_SPLICE	YES	129	1	0.43	0.99	1.1103	0.2498	FYTTD1->chr3:197464050-197514467:+,forty-two-three_domain_containing_1,HOXA-AS2->HOXA_cluster_antisense_RNA_2,chr7:27147396-27173921:+	MKN7_STOMACH	0.43	0.99	1.3601	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ERBB2--STARD3	66	41	ERBB2	2952	chr17:37849578:+	STARD3	34730	chr17:37813261:+	ONLY_REF_SPLICE	YES	85	638	0.56	0.14	0.916	0.569	LOCAL_REARRANGEMENT:+:[24430],ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+	MKN7_STOMACH	0.14	0.56	1.485	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PDCD6--CCDC127	35	95	PDCD6	2152	chr5:272887:+	CCDC127	22305	chr5:216974:-	ONLY_REF_SPLICE	YES	597	4	0.18	0.97	0.4857	1.3184	{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[53406],PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,CCDC127->chr5:196986-218330:-,coiled-coil_domain_containing_127	MKN7_STOMACH	0.18	0.97	1.8041	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	SYMPK--PRKD2	51	20	SYMPK	5024	chr19:46357433:-	PRKD2	37129	chr19:47214295:-	ONLY_REF_SPLICE	YES	51	32	0.58	0.69	0.7078	0.2776	SYMPK->chr19:46318668-46366548:-,symplekin,PRKD2->chr19:47177532-47220384:-,protein_kinase_D2	MKN7_STOMACH	0.58	0.69	0.9854	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	WDR45B--RAB40B	47	31	WDR45B	4529	chr17:80588797:-	RAB40B	20861	chr17:80622432:-	ONLY_REF_SPLICE	YES	117	10	0.4	0.89	0.6523	0.4302	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[6420],WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-,RAB40B->RAB40B,_member_RAS_oncogene_family,chr17:80612849-80656604:-	MKN7_STOMACH	0.4	0.89	1.0825	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TKT--DCP1A	43	38	TKT	1217	chr3:53289852:-	DCP1A	26793	chr3:53346409:-	ONLY_REF_SPLICE	YES	1049	12	0.07	0.87	0.5968	0.5274	LOCAL_REARRANGEMENT:-:[27379],TKT->chr3:53258723-53290068:-,transketolase,DCP1A->chr3:53317447-53381654:-,decapping_mRNA_1A	MKN7_STOMACH	0.07	0.87	1.1242	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FUT8--FNTB	41	40	FUT8	5815	chr14:65922436:+	FNTB	46771	chr14:65527899:+	ONLY_REF_SPLICE	YES	130	79	0.38	0.51	0.569	0.5551	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta	MKN7_STOMACH	0.38	0.51	1.1241	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	LAMA3--CARM1	33	44	LAMA3	44817	chr18:21456371:+	CARM1	88991	chr19:11024553:+	ONLY_REF_SPLICE	YES	1122	92	0.06	0.46	0.458	0.6106	{Klijn_CCL:Stomach=1},LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MKN7_STOMACH	0.06	0.46	1.0686	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	WDR45B--RAB40B	32	23	WDR45B	2355	chr17:80601825:-	RAB40B	20861	chr17:80622432:-	ONLY_REF_SPLICE	YES	124	10	0.31	0.85	0.4441	0.3192	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[6420],WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-,RAB40B->RAB40B,_member_RAS_oncogene_family,chr17:80612849-80656604:-	MKN7_STOMACH	0.31	0.85	0.7633	TRUE	0	2	0	1	2	TRUE	ACH-000678
MKN7_STOMACH	TOMM40--CEACAM19	11	95	TOMM40	4498	chr19:45397323:+	CEACAM19	13944	chr19:45174576:+	ONLY_REF_SPLICE	YES	351	0	0.23	1	0.1527	1.3184	{Klijn_CCL:Stomach=1},TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	MKN7_STOMACH	0.23	1	1.4711	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TOMM40--CEACAM19	11	89	TOMM40	4498	chr19:45397323:+	CEACAM19	14530	chr19:45175162:+	ONLY_REF_SPLICE	YES	351	37	0.22	0.73	0.1527	1.2352	{Klijn_CCL:Stomach=1},TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	MKN7_STOMACH	0.22	0.73	1.3879	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TOMM40--CEACAM19	7	94	TOMM40	4498	chr19:45397323:+	CEACAM19	14386	chr19:45175018:+	ONLY_REF_SPLICE	YES	351	14	0.22	0.88	0.0971	1.3045	{Klijn_CCL:Stomach=1},TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	MKN7_STOMACH	0.22	0.88	1.4016	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	URI1--SLC7A10	28	9	URI1	5244	chr19:30433571:+	SLC7A10	26473	chr19:33706879:-	ONLY_REF_SPLICE	YES	39	7	0.49	0.84	0.3886	0.1249	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,SLC7A10->chr19:33699570-33716756:-,solute_carrier_family_7_member_10	MKN7_STOMACH	0.49	0.84	0.5135	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RBM6--DAG1	22	30	RBM6	12631	chr3:50085752:+	DAG1	41920	chr3:49547852:+	ONLY_REF_SPLICE	YES	96	283	0.35	0.16	0.3053	0.4163	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MKN7_STOMACH	0.16	0.35	0.7216	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ZC3H7A--BCAR4	28	0	ZC3H7A	1144	chr16:11890980:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3886	0	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	MKN7_STOMACH	1	1	0.3886	TRUE	0	12	0	3	12	TRUE	ACH-000678
MKN7_STOMACH	PCBP1-AS1--C2orf42	20	17	PCBP1-AS1	5481	chr2:70310639:-	C2orf42	42422	chr2:70410067:-	ONLY_REF_SPLICE	YES	12	2	0.76	0.95	0.2776	0.2359	LOCAL_REARRANGEMENT:-:[61034],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42	MKN7_STOMACH	0.76	0.95	0.5135	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	LAMA3--CARM1	15	33	LAMA3	45927	chr18:21462009:+	CARM1	90169	chr19:11027083:+	ONLY_REF_SPLICE	YES	1288	129	0.04	0.27	0.2082	0.458	{Klijn_CCL:Stomach=1},LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MKN7_STOMACH	0.04	0.27	0.6662	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	STX8--USP43	20	10	STX8	4345	chr17:9471688:-	USP43	37472	chr17:9631271:+	ONLY_REF_SPLICE	YES	20	4	0.6	0.88	0.2776	0.1388	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[68107],STX8->chr17:9153788-9479908:-,syntaxin_8,USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43	MKN7_STOMACH	0.6	0.88	0.4164	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	AIFM1--ZNF280C	20	4	AIFM1	16183	chrX:129263945:-	ZNF280C	31365	chrX:129354454:-	ONLY_REF_SPLICE	YES	105	5	0.19	0.83	0.2776	0.0555	LOCAL_REARRANGEMENT:-:[36824],AIFM1->Oncogene{Bushman},apoptosis_inducing_factor,_mitochondria_associated_1,chrX:129263337-129299861:-,ZNF280C->chrX:129336685-129402873:-,zinc_finger_protein_280C	MKN7_STOMACH	0.19	0.83	0.3331	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PDCD6--CCDC127	5	63	PDCD6	1201	chr5:271936:+	CCDC127	23436	chr5:206073:-	ONLY_REF_SPLICE	YES	657	102	0.09	0.4	0.0694	0.8743	{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[53406],PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,CCDC127->chr5:196986-218330:-,coiled-coil_domain_containing_127	MKN7_STOMACH	0.09	0.4	0.9437	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FUT8--FNTB	4	58	FUT8	5815	chr14:65922436:+	FNTB	45656	chr14:65521293:+	ONLY_REF_SPLICE	YES	130	73	0.32	0.46	0.0555	0.8049	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta	MKN7_STOMACH	0.32	0.46	0.8604	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PCBP1-AS1--C2orf42	16	8	PCBP1-AS1	4300	chr2:70312679:-	C2orf42	42422	chr2:70410067:-	ONLY_REF_SPLICE	YES	20	2	0.55	0.92	0.2221	0.111	LOCAL_REARRANGEMENT:-:[61034],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42	MKN7_STOMACH	0.55	0.92	0.3331	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TTC39C--CABLES1	16	8	TTC39C	11238	chr18:21663045:+	CABLES1	42586	chr18:20832924:+	ONLY_REF_SPLICE	YES	12	35	0.67	0.41	0.2221	0.111	{Klijn_CCL:Stomach=1},TTC39C->chr18:21572737-21715574:+,tetratricopeptide_repeat_domain_39C,CABLES1->Cdk5_and_Abl_enzyme_substrate_1,chr18:20714528-20840431:+	MKN7_STOMACH	0.41	0.67	0.3331	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PIR--ITGB4	17	0	PIR	9674	chrX:15444029:-	ITGB4	31040	chr17:73737063:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2359	0	PIR->chrX:15402921-15511687:-,pirin,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	MKN7_STOMACH	1	1	0.2359	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	VPS8--RP11-433C9.2	15	7	VPS8	32789	chr3:184612713:+	RP11-433C9.2	68539	chr3:184157032:+	ONLY_REF_SPLICE	YES	18	0	0.55	1	0.2082	0.0971	VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+,RP11-433C9.2->chr3:184119325-184157436:+	MKN7_STOMACH	0.55	1	0.3053	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PRPF8--FAM182B	12	12	PRPF8	12802	chr17:1576375:-	FAM182B	36158	chr20:25829584:-	ONLY_REF_SPLICE	YES	78	1	0.24	0.96	0.1665	0.1665	PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8,FAM182B->chr20:25744102-25848861:-,family_with_sequence_similarity_182_member_B	MKN7_STOMACH	0.24	0.96	0.333	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FUT8--FNTB	4	43	FUT8	3623	chr14:65879932:+	FNTB	44544	chr14:65519956:+	ONLY_REF_SPLICE	YES	169	55	0.22	0.46	0.0555	0.5968	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta	MKN7_STOMACH	0.22	0.46	0.6523	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FYTTD1--HOXA-AS2	10	19	FYTTD1	9739	chr3:197500309:+	HOXA-AS2	28178	chr7:27160605:+	INCL_NON_REF_SPLICE	YES	140	1	0.17	0.97	0.1388	0.2637	FYTTD1->chr3:197464050-197514467:+,forty-two-three_domain_containing_1,HOXA-AS2->HOXA_cluster_antisense_RNA_2,chr7:27147396-27173921:+	MKN7_STOMACH	0.17	0.97	0.4025	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	USP43--PRPF8	13	5	USP43	17389	chr17:9615449:+	PRPF8	36070	chr17:1565447:-	ONLY_REF_SPLICE	YES	4	78	0.82	0.19	0.1804	0.0694	USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43,PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8	MKN7_STOMACH	0.19	0.82	0.2498	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	EHMT1--EXD3	12	7	EHMT1	14080	chr9:140657272:+	EXD3	52338	chr9:140289856:-	ONLY_REF_SPLICE	YES	54	1	0.26	0.95	0.1665	0.0971	EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3	MKN7_STOMACH	0.26	0.95	0.2636	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RBM6--DAG1	5	33	RBM6	12631	chr3:50085752:+	DAG1	39347	chr3:49526059:+	ONLY_REF_SPLICE	YES	96	280	0.28	0.12	0.0694	0.458	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MKN7_STOMACH	0.12	0.28	0.5274	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RBM6--DAG1	5	32	RBM6	12660	chr3:50085781:+	DAG1	41920	chr3:49547852:+	INCL_NON_REF_SPLICE	YES	112	283	0.25	0.12	0.0694	0.4441	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MKN7_STOMACH	0.12	0.25	0.5135	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	LYL1--CACNA1A	10	11	LYL1	1631	chr19:13213345:-	CACNA1A	47923	chr19:13346544:-	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.1388	0.1527	LYL1->Oncogene{Bushman},chr19:13209847-13213975:-,lymphoblastic_leukemia_associated_hematopoiesis_regulator_1,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	MKN7_STOMACH	0.91	1	0.2915	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	VPS13B--OSR2	9	10	VPS13B	5103	chr8:100115348:+	OSR2	83665	chr8:99961067:+	ONLY_REF_SPLICE	YES	11	146	0.63	0.12	0.1249	0.1388	LOCAL_REARRANGEMENT:+:[61162],VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),OSR2->chr8:99956631-99964332:+,odd-skipped_related_transciption_factor_2	MKN7_STOMACH	0.12	0.63	0.2637	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PCBP1-AS1--C2orf42	7	15	PCBP1-AS1	5450	chr2:70310670:-	C2orf42	42422	chr2:70410067:-	ONLY_REF_SPLICE	YES	11	2	0.67	0.92	0.0971	0.2082	LOCAL_REARRANGEMENT:-:[61034],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42	MKN7_STOMACH	0.67	0.92	0.3053	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RBM6--DAG1	2	35	RBM6	12631	chr3:50085752:+	DAG1	38185	chr3:49524687:+	ONLY_REF_SPLICE	YES	96	280	0.28	0.12	0.0278	0.4857	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MKN7_STOMACH	0.12	0.28	0.5135	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PSD3--LY6K	10	0	PSD3	3423	chr8:18871073:-	LY6K	46876	chr8:143783018:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1388	0	PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,LY6K->chr8:143781529-143786545:+,lymphocyte_antigen_6_complex,_locus_K	MKN7_STOMACH	1	1	0.1388	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RBM6--DAG1	1	36	RBM6	12631	chr3:50085752:+	DAG1	38159	chr3:49524661:+	ONLY_REF_SPLICE	YES	96	280	0.28	0.12	0.0139	0.4996	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MKN7_STOMACH	0.12	0.28	0.5135	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	SYTL1--WDTC1	9	4	SYTL1	7182	chr1:27676256:+	WDTC1	20174	chr1:27614165:+	ONLY_REF_SPLICE	YES	2	37	0.87	0.26	0.1249	0.0555	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[33403],SYTL1->chr1:27668513-27680421:+,synaptotagmin_like_1,WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+	MKN7_STOMACH	0.26	0.87	0.1804	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	CEP70--PIK3CB	7	11	CEP70	6826	chr3:138289160:-	PIK3CB	47750	chr3:138384045:-	ONLY_REF_SPLICE	YES	34	38	0.35	0.32	0.0971	0.1527	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:-:[59480],CEP70->centrosomal_protein_70,chr3:138213186-138313380:-,PIK3CB->ArcherDX_panel,FoundationOne_panel,chr3:138372860-138553780:-,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_beta	MKN7_STOMACH	0.32	0.35	0.2498	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PIR--AP1S2	9	3	PIR	7115	chrX:15473971:-	AP1S2	18757	chrX:15870647:-	ONLY_REF_SPLICE	YES	70	0	0.15	1	0.1249	0.0416	PIR->chrX:15402921-15511687:-,pirin,AP1S2->adaptor_related_protein_complex_1_sigma_2_subunit,chrX:15843929-15873054:-	MKN7_STOMACH	0.15	1	0.1665	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	CMPK1--MYH11	8	6	CMPK1	4045	chr1:47834287:+	MYH11	16668	chr16:15892544:-	ONLY_REF_SPLICE	YES	207	0	0.06	1	0.111	0.0833	CMPK1->chr1:47799469-47844511:+,cytidine/uridine_monophosphate_kinase_1,MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	MKN7_STOMACH	0.06	1	0.1943	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	NAV1--PKP1	9	2	NAV1	4638	chr1:201618553:+	PKP1	49346	chr1:201263070:+	ONLY_REF_SPLICE	YES	12	1	0.48	0.92	0.1249	0.0278	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,PKP1->chr1:201252580-201302121:+,plakophilin_1	MKN7_STOMACH	0.48	0.92	0.1527	TRUE	0	0	0	2	0	TRUE	ACH-000678
MKN7_STOMACH	PRPF8--FAM182B	6	12	PRPF8	12802	chr17:1576375:-	FAM182B	32483	chr20:25840504:-	INCL_NON_REF_SPLICE	YES	78	4	0.19	0.82	0.0833	0.1665	PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8,FAM182B->chr20:25744102-25848861:-,family_with_sequence_similarity_182_member_B	MKN7_STOMACH	0.19	0.82	0.2498	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PRPF8--FAM182B	7	4	PRPF8	12802	chr17:1576375:-	FAM182B	37402	chr20:25767624:-	ONLY_REF_SPLICE	YES	78	2	0.12	0.85	0.0971	0.0555	PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8,FAM182B->chr20:25744102-25848861:-,family_with_sequence_similarity_182_member_B	MKN7_STOMACH	0.12	0.85	0.1526	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PRPF8--FAM182B	7	4	PRPF8	12802	chr17:1576375:-	FAM182B	39814	chr20:25755948:-	ONLY_REF_SPLICE	YES	78	3	0.12	0.79	0.0971	0.0555	PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8,FAM182B->chr20:25744102-25848861:-,family_with_sequence_similarity_182_member_B	MKN7_STOMACH	0.12	0.79	0.1526	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ZC3H7A--BCAR4	7	0	ZC3H7A	1144	chr16:11890980:-	BCAR4	31097	chr16:11915612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0971	0	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	MKN7_STOMACH	1	1	0.0971	TRUE	0	7	0	3	7	TRUE	ACH-000678
MKN7_STOMACH	SMOX--ATRN	6	3	SMOX	11810	chr20:4164301:+	ATRN	18294	chr20:3515900:+	ONLY_REF_SPLICE	YES	80	42	0.1	0.18	0.0833	0.0416	SMOX->chr20:4101627-4168394:+,spermine_oxidase,ATRN->attractin,chr20:3451687-3631769:+	MKN7_STOMACH	0.1	0.18	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RBM6--DAG1	4	10	RBM6	3185	chr3:50000118:+	DAG1	41920	chr3:49547852:+	ONLY_REF_SPLICE	YES	76	283	0.16	0.05	0.0555	0.1388	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MKN7_STOMACH	0.05	0.16	0.1943	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ANKHD1--CYSTM1	6	1	ANKHD1	1460	chr5:139781858:+	CYSTM1	47050	chr5:139622890:+	ONLY_REF_SPLICE	YES	28	133	0.2	0.05	0.0833	0.0139	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1	MKN7_STOMACH	0.05	0.2	0.0972	TRUE	1	2	1	5	0	TRUE	ACH-000678
MKN7_STOMACH	NCOA3--EYA2	6	1	NCOA3	23198	chr20:46282288:+	EYA2	43616	chr20:45771698:+	INCL_NON_REF_SPLICE	YES	41	0	0.15	1	0.0833	0.0139	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	MKN7_STOMACH	0.15	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PCBP1-AS1--C2orf42	2	17	PCBP1-AS1	7683	chr2:70304433:-	C2orf42	42422	chr2:70410067:-	ONLY_REF_SPLICE	YES	12	2	0.61	0.9	0.0278	0.2359	LOCAL_REARRANGEMENT:-:[61034],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42	MKN7_STOMACH	0.61	0.9	0.2637	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PSD3--PSCA	6	1	PSD3	3423	chr8:18871073:-	PSCA	47519	chr8:143762745:+	ONLY_REF_SPLICE	YES	0	3	1	0.7	0.0833	0.0139	PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,PSCA->Oncogene{Bushman},chr8:143751726-143764142:+,prostate_stem_cell_antigen	MKN7_STOMACH	0.7	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	CEP70--PIK3CB	4	7	CEP70	6110	chr3:138289876:-	PIK3CB	47750	chr3:138384045:-	ONLY_REF_SPLICE	YES	35	38	0.24	0.22	0.0555	0.0971	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:-:[59480],CEP70->centrosomal_protein_70,chr3:138213186-138313380:-,PIK3CB->ArcherDX_panel,FoundationOne_panel,chr3:138372860-138553780:-,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_beta	MKN7_STOMACH	0.22	0.24	0.1526	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ELMSAN1--RP5-1021I20.2	5	1	ELMSAN1	2618	chr14:74253805:-	RP5-1021I20.2	28768	chr14:74290195:-	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0694	0.0139	LOCAL_REARRANGEMENT:-:[32274],ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,RP5-1021I20.2->chr14:74289262-74296838:-	MKN7_STOMACH	0.67	1	0.0833	TRUE	0	4	0	1	4	TRUE	ACH-000678
MKN7_STOMACH	NUDCD1--CCSER1	4	4	NUDCD1	3778	chr8:110334538:-	CCSER1	52526	chr4:92519723:+	ONLY_REF_SPLICE	YES	142	0	0.05	1	0.0555	0.0555	NUDCD1->NudC_domain_containing_1,chr8:110253148-110346614:-,CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1	MKN7_STOMACH	0.05	1	0.111	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PAWR--ASTN2	5	0	PAWR	2369	chr12:80083509:-	ASTN2	29303	chr9:120053792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0694	0	{Klijn_CCL:Stomach=1},PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,ASTN2->Oncogene{Bushman},astrotactin_2,chr9:119187504-120177348:-	MKN7_STOMACH	1	1	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FUT8--FNTB	4	3	FUT8	2402	chr14:65878711:+	FNTB	44544	chr14:65519956:+	ONLY_REF_SPLICE	YES	18	55	0.28	0.11	0.0555	0.0416	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta	MKN7_STOMACH	0.11	0.28	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	LYL1--CACNA1A	1	14	LYL1	1631	chr19:13213345:-	CACNA1A	47035	chr19:13347432:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0139	0.1943	LYL1->Oncogene{Bushman},chr19:13209847-13213975:-,lymphoblastic_leukemia_associated_hematopoiesis_regulator_1,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	MKN7_STOMACH	0.88	1	0.2082	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FYTTD1--HOXA-AS2	4	1	FYTTD1	8703	chr3:197497115:+	HOXA-AS2	30652	chr7:27163079:+	ONLY_REF_SPLICE	YES	129	5	0.04	0.5	0.0555	0.0139	FYTTD1->chr3:197464050-197514467:+,forty-two-three_domain_containing_1,HOXA-AS2->HOXA_cluster_antisense_RNA_2,chr7:27147396-27173921:+	MKN7_STOMACH	0.04	0.5	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TANC1--DAPL1	3	5	TANC1	2259	chr2:159857701:+	DAPL1	40745	chr2:159660794:+	ONLY_REF_SPLICE	YES	21	1	0.28	0.89	0.0416	0.0694	GTEx&tcga_normals:1/3694=0.03%,TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,DAPL1->chr2:159651829-159719293:+,death_associated_protein_like_1	MKN7_STOMACH	0.28	0.89	0.111	TRUE	0	1	0	1	1	TRUE	ACH-000678
MKN7_STOMACH	GLTPD1--PITHD1	3	4	GLTPD1	1347	chr1:1260482:+	PITHD1	10923	chr1:24112165:+	ONLY_REF_SPLICE	YES	97	39	0.07	0.15	0.0416	0.0555	GLTPD1->chr1:1260136-1264277:+,PITHD1->PITH_domain_containing_1,chr1:24104895-24114722:+	MKN7_STOMACH	0.07	0.15	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	MAP4--RP11-24C3.2	3	4	MAP4	1507	chr3:48130263:-	RP11-24C3.2	42316	chr3:48482272:-	ONLY_REF_SPLICE	YES	20	1	0.26	0.88	0.0416	0.0555	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,RP11-24C3.2->chr3:48481762-48488060:-	MKN7_STOMACH	0.26	0.88	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PAWR--ASTN2	4	0	PAWR	2369	chr12:80083509:-	ASTN2	30491	chr9:119977021:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0555	0	{Klijn_CCL:Stomach=1},PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,ASTN2->Oncogene{Bushman},astrotactin_2,chr9:119187504-120177348:-	MKN7_STOMACH	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PRPF8--FAM182B	3	4	PRPF8	12802	chr17:1576375:-	FAM182B	39790	chr20:25755972:-	ONLY_REF_SPLICE	YES	78	2	0.08	0.78	0.0416	0.0555	PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8,FAM182B->chr20:25744102-25848861:-,family_with_sequence_similarity_182_member_B	MKN7_STOMACH	0.08	0.78	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	SYMPK--PRKD2	1	11	SYMPK	4808	chr19:46357649:-	PRKD2	37129	chr19:47214295:-	ONLY_REF_SPLICE	YES	82	32	0.13	0.27	0.0139	0.1527	SYMPK->chr19:46318668-46366548:-,symplekin,PRKD2->chr19:47177532-47220384:-,protein_kinase_D2	MKN7_STOMACH	0.13	0.27	0.1666	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TM9SF4--TLDC2	3	2	TM9SF4	17397	chr20:30749168:+	TLDC2	30527	chr20:35521265:+	ONLY_REF_SPLICE	YES	131	0	0.04	1	0.0416	0.0278	TM9SF4->chr20:30697309-30755061:+,transmembrane_9_superfamily_member_4,TLDC2->TBC/LysM-associated_domain_containing_2,chr20:35504524-35522638:+	MKN7_STOMACH	0.04	1	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	DOCK4--IMMP2L	3	0	DOCK4	13779	chr7:111575595:-	IMMP2L	72389	chr7:110603621:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	MKN7_STOMACH	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	IRF2--RUSC2	2	3	IRF2	11115	chr4:185311857:-	RUSC2	18993	chr9:35546427:+	ONLY_REF_SPLICE	YES	42	1	0.11	0.83	0.0278	0.0416	IRF2->ArcherDX_panel,FoundationOne_panel,chr4:185308867-185395734:-,interferon_regulatory_factor_2,RUSC2->RUN_and_SH3_domain_containing_2,chr9:35490124-35561895:+	MKN7_STOMACH	0.11	0.83	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ATG14--TBPL2	2	2	ATG14	9597	chr14:55844537:-	TBPL2	18544	chr14:55907181:-	ONLY_REF_SPLICE	YES	50	0	0.07	1	0.0278	0.0278	LOCAL_REARRANGEMENT:-:[1683],ATG14->autophagy_related_14,chr14:55833110-55878576:-,TBPL2->TATA-box_binding_protein_like_2,chr14:55880259-55923444:-	MKN7_STOMACH	0.07	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	CEP70--PIK3CB	1	6	CEP70	3661	chr3:138310696:-	PIK3CB	47750	chr3:138384045:-	ONLY_REF_SPLICE	NO	101	38	0.06	0.16	0.0139	0.0833	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:-:[59480],CEP70->centrosomal_protein_70,chr3:138213186-138313380:-,PIK3CB->ArcherDX_panel,FoundationOne_panel,chr3:138372860-138553780:-,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_beta	MKN7_STOMACH	0.06	0.16	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	NAV1--PKP1	2	2	NAV1	2428	chr1:201598635:+	PKP1	49346	chr1:201263070:+	ONLY_REF_SPLICE	YES	11	1	0.27	0.8	0.0278	0.0278	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,PKP1->chr1:201252580-201302121:+,plakophilin_1	MKN7_STOMACH	0.27	0.8	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ZC3H7A--BCAR4	2	2	ZC3H7A	2049	chr16:11890075:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	2	2	0.67	0.67	0.0278	0.0278	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	MKN7_STOMACH	0.67	0.67	0.0556	TRUE	0	12	0	3	12	TRUE	ACH-000678
MKN7_STOMACH	PLAGL2--ARHGAP44	2	1	PLAGL2	2525	chr20:30789722:-	ARHGAP44	20777	chr17:12844373:+	ONLY_REF_SPLICE	YES	28	2	0.1	0.6	0.0278	0.0139	PLAGL2->Oncogene{Bushman},PLAG1_like_zinc_finger_2,chr20:30780306-30795594:-,ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+	MKN7_STOMACH	0.1	0.6	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ROCK1--ESCO1	1	5	ROCK1	6081	chr18:18625253:-	ESCO1	46191	chr18:19155738:-	ONLY_REF_SPLICE	YES	33	11	0.15	0.35	0.0139	0.0694	ROCK1->Rho_associated_coiled-coil_containing_protein_kinase_1,chr18:18526867-18691812:-,ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1	MKN7_STOMACH	0.15	0.35	0.0833	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	SYTL1--WDTC1	2	1	SYTL1	6915	chr1:27675989:+	WDTC1	20174	chr1:27614165:+	ONLY_REF_SPLICE	YES	4	37	0.43	0.07	0.0278	0.0139	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[33403],SYTL1->chr1:27668513-27680421:+,synaptotagmin_like_1,WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+	MKN7_STOMACH	0.07	0.43	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TMCO4--ST3GAL3	2	1	TMCO4	2809	chr1:20124630:-	ST3GAL3	38245	chr1:44360055:+	ONLY_REF_SPLICE	YES	6	26	0.33	0.1	0.0278	0.0139	TMCO4->chr1:20008706-20126438:-,transmembrane_and_coiled-coil_domains_4,ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+	MKN7_STOMACH	0.1	0.33	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TMCO4--ST3GAL3	2	1	TMCO4	3967	chr1:20113519:-	ST3GAL3	38245	chr1:44360055:+	ONLY_REF_SPLICE	YES	7	26	0.3	0.1	0.0278	0.0139	TMCO4->chr1:20008706-20126438:-,transmembrane_and_coiled-coil_domains_4,ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+	MKN7_STOMACH	0.1	0.3	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ABCC5--NEDD4L	2	0	ABCC5	8141	chr3:183705558:-	NEDD4L	50277	chr18:55833020:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	ABCC5->ATP_binding_cassette_subfamily_C_member_5,chr3:183637722-183735803:-,NEDD4L->chr18:55711599-56068772:+,neural_precursor_cell_expressed,_developmentally_down-regulated_4-like,_E3_ubiquitin_protein_ligase	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ARHGEF3--CCDC66	2	0	ARHGEF3	4019	chr3:57069116:-	CCDC66	47845	chr3:56647617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	ARHGEF3->Rho_guanine_nucleotide_exchange_factor_3,chr3:56761446-57113357:-,CCDC66->chr3:56591189-56655846:+,coiled-coil_domain_containing_66	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PIGT--INPPL1	2	0	PIGT	6714	chr20:44053219:+	INPPL1	12459	chr11:71935824:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	PIGT->chr20:44044717-44054884:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_T,INPPL1->Oncogene{Bushman},chr11:71934745-71950149:+,inositol_polyphosphate_phosphatase_like_1	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PIR--ITGB4	2	0	PIR	7115	chrX:15473971:-	ITGB4	31040	chr17:73737063:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	PIR->chrX:15402921-15511687:-,pirin,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RP11-466I1.1--PPFIA1	2	0	RP11-466I1.1	2424	chr11:29233312:+	PPFIA1	31698	chr11:70200407:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	RP11-466I1.1->chr11:29181503-29288281:+,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RP5-977B1.7--TAF1D	2	0	RP5-977B1.7	2583	chr20:35199844:-	TAF1D	23166	chr11:93467826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	RP5-977B1.7->chr20:35136563-35201794:-,TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	SHISA5--RPL11	2	0	SHISA5	4663	chr3:48538570:-	RPL11	15720	chr1:24019099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	SHISA5->chr3:48509197-48542259:-,shisa_family_member_5,RPL11->chr1:24018269-24022915:+,ribosomal_protein_L11	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TTC39C--CABLES1	2	0	TTC39C	8714	chr18:21649235:+	CABLES1	42586	chr18:20832924:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	{Klijn_CCL:Stomach=1},TTC39C->chr18:21572737-21715574:+,tetratricopeptide_repeat_domain_39C,CABLES1->Cdk5_and_Abl_enzyme_substrate_1,chr18:20714528-20840431:+	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	URI1--SLC7A10	2	0	URI1	5244	chr19:30433571:+	SLC7A10	31195	chr19:33700391:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,SLC7A10->chr19:33699570-33716756:-,solute_carrier_family_7_member_10	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	WNK1--PRKAA2	2	0	WNK1	5126	chr12:936428:+	PRKAA2	47263	chr1:57158031:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,PRKAA2->chr1:57110995-57181008:+,protein_kinase_AMP-activated_catalytic_subunit_alpha_2	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	SPEN--AC005594.3	1	3	SPEN	5344	chr1:16203173:+	AC005594.3	30327	chr19:4682813:+	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.0139	0.0416	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,AC005594.3->chr19:4679294-4685960:+	MKN7_STOMACH	0.16	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TMEM241--RP11-403A21.3	1	3	TMEM241	17323	chr18:20889644:-	RP11-403A21.3	30996	chr18:21657223:-	ONLY_REF_SPLICE	NO	34	0	0.11	1	0.0139	0.0416	TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,RP11-403A21.3->chr18:21656758-21679284:-	MKN7_STOMACH	0.11	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	SPEN--AC005594.3	1	2	SPEN	5344	chr1:16203173:+	AC005594.3	31237	chr19:4683723:+	ONLY_REF_SPLICE	YES	21	4	0.12	0.43	0.0139	0.0278	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,AC005594.3->chr19:4679294-4685960:+	MKN7_STOMACH	0.12	0.43	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PPM1H--AVPR1A	1	1	PPM1H	13226	chr12:63060958:-	AVPR1A	23958	chr12:63541425:-	ONLY_REF_SPLICE	YES	17	2	0.11	0.5	0.0139	0.0139	PPM1H->chr12:63037762-63328817:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1H,AVPR1A->arginine_vasopressin_receptor_1A,chr12:63539014-63544722:-	MKN7_STOMACH	0.11	0.5	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	WWOX--VAT1L	1	1	WWOX	23541	chr16:78466649:+	VAT1L	37762	chr16:77910267:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0.0139	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
YAPC_PANCREAS	MEGF6--PLCH2	60	36	MEGF6	4708	chr1:3496389:-	PLCH2	37795	chr1:2409915:+	ONLY_REF_SPLICE	YES	4	37	0.96	0.72	0.9433	0.566	{Klijn_CCL:Pancreas=1},MEGF6->chr1:3406484-3528059:-,multiple_EGF_like_domains_6,PLCH2->Oncogene{Bushman},chr1:2357419-2436969:+,phospholipase_C_eta_2	YAPC_PANCREAS	0.72	0.96	1.5093	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	VEGFA--KIF6	33	12	VEGFA	2129	chr6:43739049:+	KIF6	21396	chr6:39688587:-	ONLY_REF_SPLICE	YES	32	1	0.58	0.98	0.5188	0.1887	{Klijn_CCL:Pancreas=1},VEGFA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:43737921-43754224:+,vascular_endothelial_growth_factor_A,KIF6->chr6:39297766-39693181:-,kinesin_family_member_6	YAPC_PANCREAS	0.58	0.98	0.7075	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	SIM2--RIPPLY3	9	7	SIM2	5325	chr21:38084922:+	RIPPLY3	24447	chr21:38385851:+	ONLY_REF_SPLICE	YES	0	3	1	0.84	0.1415	0.11	SIM2->chr21:38071433-38122218:+,single-minded_family_bHLH_transcription_factor_2,RIPPLY3->chr21:38378450-38391959:+,ripply_transcriptional_repressor_3	YAPC_PANCREAS	0.84	1	0.2515	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	TFEB--TRERF1	7	2	TFEB	1910	chr6:41703088:-	TRERF1	20005	chr6:42330817:-	ONLY_REF_SPLICE	YES	2	19	0.82	0.32	0.11	0.0314	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	YAPC_PANCREAS	0.32	0.82	0.1414	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	CAMTA1--MRPS18A	7	1	CAMTA1	4547	chr1:6885270:+	MRPS18A	42003	chr6:43648857:-	ONLY_REF_SPLICE	YES	18	171	0.31	0.04	0.11	0.0157	CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,MRPS18A->chr6:43639040-43655528:-,mitochondrial_ribosomal_protein_S18A	YAPC_PANCREAS	0.04	0.31	0.1257	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	SWAP70--WEE1	4	0	SWAP70	1202	chr11:9685825:+	WEE1	28332	chr11:9598689:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0629	0	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:+:[70620],SWAP70->Oncogene{Bushman},SWAP_switching_B-cell_complex_70kDa_subunit,chr11:9685624-9774538:+,WEE1->WEE1_G2_checkpoint_kinase,chr11:9595228-9615004:+	YAPC_PANCREAS	1	1	0.0629	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	ARFIP2--LSP1	3	1	ARFIP2	4719	chr11:6498948:-	LSP1	26877	chr11:1913003:+	ONLY_REF_SPLICE	YES	18	2	0.18	0.67	0.0472	0.0157	ARFIP2->ADP_ribosylation_factor_interacting_protein_2,chr11:6496910-6502666:-,LSP1->chr11:1874200-1913497:+,chr13:25591541-25591675:+,lymphocyte-specific_protein_1	YAPC_PANCREAS	0.18	0.67	0.0629	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	CCND3--WDR62	3	1	CCND3	2857	chr6:42016239:-	WDR62	40011	chr19:36590301:+	ONLY_REF_SPLICE	YES	24	4	0.14	0.5	0.0472	0.0157	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+	YAPC_PANCREAS	0.14	0.5	0.0629	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	MIR3676--FLNB	3	0	MIR3676	1062	chr17:8090554:+	FLNB	50778	chr3:58148877:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	MIR3676->chr17:8090493-8090577:+,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	YAPC_PANCREAS	1	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	PKM--CCDC94	3	0	PKM	18707	chr15:72492923:-	CCDC94	25458	chr19:4249273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,CCDC94->chr19:4247076-4269087:+,coiled-coil_domain_containing_94	YAPC_PANCREAS	1	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	TBC1D15--NAP1L1	3	0	TBC1D15	1105	chr12:72233591:+	NAP1L1	41127	chr12:76449941:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0472	0	TBC1D15->TBC1_domain_family_member_15,chr12:72233487-72320629:+,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	YAPC_PANCREAS	1	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	TCHP--LRRN1	3	0	TCHP	17087	chr12:110368480:+	LRRN1	32084	chr3:3887034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	TCHP->chr12:110338069-110421646:+,trichoplein_keratin_filament_binding,LRRN1->chr3:3841121-3889387:+,leucine_rich_repeat_neuronal_1	YAPC_PANCREAS	1	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	VEGFA--KIF6	1	5	VEGFA	2129	chr6:43739049:+	KIF6	23855	chr6:39682542:-	ONLY_REF_SPLICE	YES	32	7	0.16	0.46	0.0157	0.0786	{Klijn_CCL:Pancreas=1},VEGFA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:43737921-43754224:+,vascular_endothelial_growth_factor_A,KIF6->chr6:39297766-39693181:-,kinesin_family_member_6	YAPC_PANCREAS	0.16	0.46	0.0943	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	ABCA5--RPL35A	2	0	ABCA5	2312	chr17:67321840:-	RPL35A	53810	chr3:197680874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,RPL35A->chr3:197676858-197683481:+,ribosomal_protein_L35a	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	ATG16L2--ANP32B	2	0	ATG16L2	4225	chr11:72528900:+	ANP32B	23210	chr9:100756913:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	ATG16L2->autophagy_related_16_like_2,chr11:72525353-72554719:+,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	CALM2--ZBTB2	2	0	CALM2	1161	chr2:47403580:-	ZBTB2	16067	chr6:151694784:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,ZBTB2->ArcherDX_panel,FoundationOne_panel,chr6:151685252-151712683:-,zinc_finger_and_BTB_domain_containing_2	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	FDPS--POLR2B	2	0	FDPS	3847	chr1:155282186:+	POLR2B	28361	chr4:57887065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,POLR2B->chr4:57843888-57897334:+,polymerase_(RNA)_II_subunit_B	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	FUT8--NDUFB2	2	0	FUT8	3623	chr14:65879932:+	NDUFB2	36008	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	HEXA--EEF1D	2	0	HEXA	19104	chr15:72637787:-	EEF1D	35180	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	IRF2--ZNF706	2	0	IRF2	1202	chr4:185395533:-	ZNF706	20920	chr8:102213971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	IRF2->ArcherDX_panel,FoundationOne_panel,chr4:185308867-185395734:-,interferon_regulatory_factor_2,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	KDM5C--SMC1A	2	0	KDM5C	3663	chrX:53250021:-	SMC1A	31459	chrX:53436434:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	KDM5C->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:53220503-53254604:-,lysine_demethylase_5C,SMC1A->chrX:53401070-53449677:-,structural_maintenance_of_chromosomes_1A	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	RP11-93L9.1--AKR1E2	2	0	RP11-93L9.1	3263	chr4:124582988:+	AKR1E2	27845	chr10:4883977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	RP11-93L9.1->chr4:124571422-124851561:+,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	SIM2--RIPPLY3	1	4	SIM2	5325	chr21:38084922:+	RIPPLY3	25515	chr21:38390174:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0157	0.0629	SIM2->chr21:38071433-38122218:+,single-minded_family_bHLH_transcription_factor_2,RIPPLY3->chr21:38378450-38391959:+,ripply_transcriptional_repressor_3	YAPC_PANCREAS	0.83	1	0.0786	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	THG1L--CLINT1	2	0	THG1L	2612	chr5:157160052:+	CLINT1	13680	chr5:157244555:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[44295],THG1L->chr5:157158205-157168456:+,tRNA-histidine_guanylyltransferase_1_like,CLINT1->chr5:157212751-157286183:-,clathrin_interactor_1	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	THUMPD2--MAP4K3	2	0	THUMPD2	1154	chr2:40006254:-	MAP4K3	32036	chr2:39526942:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	THUMPD2->THUMP_domain_containing_2,chr2:39963200-40006407:-,MAP4K3->chr2:39476407-39664453:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_3	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	TYMS--DOCK1	1	1	TYMS	4286	chr18:662320:+	DOCK1	14346	chr10:128768966:+	ONLY_REF_SPLICE	YES	53	7	0.04	0.22	0.0157	0.0157	TYMS->chr18:657604-673578:+,thymidylate_synthetase,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	YAPC_PANCREAS	0.04	0.22	0.0314	TRUE	0	2	0	2	0	TRUE	ACH-000332
SNU324_PANCREAS	ABCC3--CACNA1G	313	55	ABCC3	1205	chr17:48712342:+	CACNA1G	46636	chr17:48673923:+	ONLY_REF_SPLICE	YES	105	0	0.78	1	2.6142	0.4594	LOCAL_REARRANGEMENT:+:[7303],ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+,CACNA1G->calcium_voltage-gated_channel_subunit_alpha1_G,chr17:48638429-48704835:+	SNU324_PANCREAS	0.78	1	3.0736	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	ABCC3--CACNA1G	51	24	ABCC3	1205	chr17:48712342:+	CACNA1G	46804	chr17:48674091:+	ONLY_REF_SPLICE	YES	105	7	0.42	0.91	0.426	0.2005	LOCAL_REARRANGEMENT:+:[7303],ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+,CACNA1G->calcium_voltage-gated_channel_subunit_alpha1_G,chr17:48638429-48704835:+	SNU324_PANCREAS	0.42	0.91	0.6265	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	EML4--ALK	30	24	EML4	8303	chr2:42491871:+	ALK	58055	chr2:29446394:-	ONLY_REF_SPLICE	YES	38	0	0.59	1	0.2506	0.2005	Cosmic{samples=10751,mutations=680,papers=477},YOSHIHARA_TCGA_num_samples[LUAD:4|THCA:1],chimerdb_pubmed{nonsmallcell lung cancer (NSCLC),nonsmall cell lung cancers (NSCLC),lung cancer,nonsmall cell lung cancer (NSCLC),nonsmall cell lung carcinoma,lung cancers,nonsmallcell lung cancers (NSCLC)},{Klijn_CCL:Lung=1},EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SNU324_PANCREAS	0.59	1	0.4511	TRUE	0	2	0	2	2	TRUE	ACH-000933
SNU324_PANCREAS	ARMC6--UPF1	18	6	ARMC6	12909	chr19:19168467:+	UPF1	20268	chr19:18956789:+	ONLY_REF_SPLICE	YES	57	2	0.3	0.92	0.1503	0.0501	ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+,UPF1->UPF1,_RNA_helicase_and_ATPase,chr19:18942747-18979045:+	SNU324_PANCREAS	0.3	0.92	0.2004	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	EML4--ALK	12	28	EML4	8523	chr2:42492091:+	ALK	58055	chr2:29446394:-	ONLY_REF_SPLICE	YES	43	0	0.48	1	0.1002	0.2339	Cosmic{samples=10751,mutations=680,papers=477},YOSHIHARA_TCGA_num_samples[LUAD:4|THCA:1],chimerdb_pubmed{nonsmallcell lung cancer (NSCLC),nonsmall cell lung cancers (NSCLC),lung cancer,nonsmall cell lung cancer (NSCLC),nonsmall cell lung carcinoma,lung cancers,nonsmallcell lung cancers (NSCLC)},{Klijn_CCL:Lung=1},EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SNU324_PANCREAS	0.48	1	0.3341	TRUE	0	2	0	2	2	TRUE	ACH-000933
SNU324_PANCREAS	ABCC3--CACNA1G	1	55	ABCC3	1205	chr17:48712342:+	CACNA1G	45567	chr17:48672354:+	ONLY_REF_SPLICE	NO	105	0	0.35	1	0.0084	0.4594	LOCAL_REARRANGEMENT:+:[7303],ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+,CACNA1G->calcium_voltage-gated_channel_subunit_alpha1_G,chr17:48638429-48704835:+	SNU324_PANCREAS	0.35	1	0.4678	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	RABGAP1L--DARS2	9	2	RABGAP1L	14961	chr1:174274265:+	DARS2	67170	chr1:173814367:+	ONLY_REF_SPLICE	YES	17	98	0.39	0.1	0.0752	0.0167	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,DARS2->aspartyl-tRNA_synthetase_2,_mitochondrial,chr1:173793641-173827684:+	SNU324_PANCREAS	0.1	0.39	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	HERC1--DAPK2	2	1	HERC1	1116	chr15:64126026:-	DAPK2	98965	chr15:64222654:-	ONLY_REF_SPLICE	YES	6	7	0.33	0.3	0.0167	0.0084	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[73094],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	SNU324_PANCREAS	0.3	0.33	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	ARHGEF7--GJB2	2	0	ARHGEF7	9993	chr13:111857720:+	GJB2	43047	chr13:20763742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,GJB2->chr13:20761609-20767037:-,gap_junction_protein_beta_2	SNU324_PANCREAS	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	C7orf50--GET4	2	0	C7orf50	3078	chr7:1166893:-	GET4	22147	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	SNU324_PANCREAS	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	IP6K1--CAMKV	1	3	IP6K1	1189	chr3:49823787:-	CAMKV	16140	chr3:49899835:-	ONLY_REF_SPLICE	YES	75	0	0.05	1	0.0084	0.0251	LOCAL_REARRANGEMENT:-:[71446],IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,CAMKV->CaM_kinase_like_vesicle_associated,chr3:49895421-49907655:-	SNU324_PANCREAS	0.05	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	WDR37--ZMYND11	1	1	WDR37	2669	chr10:1102908:+	ZMYND11	26026	chr10:225934:+	ONLY_REF_SPLICE	YES	12	9	0.14	0.18	0.0084	0.0084	WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	SNU324_PANCREAS	0.14	0.18	0.0168	TRUE	0	0	0	2	0	TRUE	ACH-000933
TE9_OESOPHAGUS	USP12--RP11-417J8.1	133	44	USP12	2386	chr13:27690653:-	RP11-417J8.1	16817	chr1:142557333:+	ONLY_REF_SPLICE	YES	29	1	0.86	0.99	1.4324	0.4739	USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,RP11-417J8.1->chr1:142553293-142559170:+	TE9_OESOPHAGUS	0.86	0.99	1.9063	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	SPAG16--AC016723.4	51	29	SPAG16	4714	chr2:214162081:+	AC016723.4	37815	chr2:168671741:-	ONLY_REF_SPLICE	YES	24	0	0.77	1	0.5493	0.3123	SPAG16->chr2:214149113-215275225:+,sperm_associated_antigen_16,AC016723.4->chr2:168671284-168797654:-	TE9_OESOPHAGUS	0.77	1	0.8616	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	GLTSCR2--SHANK2	31	20	GLTSCR2	10077	chr19:48260001:+	SHANK2	66390	chr11:70319544:-	ONLY_REF_SPLICE	YES	0	1	1	0.98	0.3339	0.2154	GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	TE9_OESOPHAGUS	0.98	1	0.5493	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	PLGRKT--IL33	30	22	PLGRKT	3397	chr9:5431897:-	IL33	13133	chr9:6241684:+	ONLY_REF_SPLICE	YES	2	0	0.96	1	0.3231	0.2369	PLGRKT->chr9:5357973-5437878:-,plasminogen_receptor_with_a_C-terminal_lysine,IL33->chr9:6215805-6257983:+,interleukin_33	TE9_OESOPHAGUS	0.96	1	0.56	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	ELF2--UGT8	17	15	ELF2	3575	chr4:140058784:-	UGT8	27797	chr4:115540579:+	ONLY_REF_SPLICE	YES	32	59	0.5	0.35	0.1831	0.1616	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,UGT8->UDP_glycosyltransferase_8,chr4:115519611-115599380:+	TE9_OESOPHAGUS	0.35	0.5	0.3447	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	TMX2--SMTNL1	14	8	TMX2	2269	chr11:57505140:+	SMTNL1	9627	chr11:57310114:+	ONLY_REF_SPLICE	YES	542	0	0.04	1	0.1508	0.0862	{Klijn_CCL:Stomach=1},TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,SMTNL1->chr11:57308979-57318108:+,smoothelin-like_1	TE9_OESOPHAGUS	0.04	1	0.237	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	USP12--RP11-417J8.1	2	44	USP12	2386	chr13:27690653:-	RP11-417J8.1	15613	chr1:142553293:+	ONLY_REF_SPLICE	YES	29	0	0.61	1	0.0215	0.4739	USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,RP11-417J8.1->chr1:142553293-142559170:+	TE9_OESOPHAGUS	0.61	1	0.4954	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	SS18L1--LSM14B	8	15	SS18L1	8410	chr20:60739302:+	LSM14B	26404	chr20:60706412:+	ONLY_REF_SPLICE	YES	51	130	0.31	0.15	0.0862	0.1616	LOCAL_REARRANGEMENT:+:[8388],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,LSM14B->LSM_family_member_14B,chr20:60697517-60710434:+	TE9_OESOPHAGUS	0.15	0.31	0.2478	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	ALDOA--KRT17	11	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1185	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	TE9_OESOPHAGUS	1	1	0.1185	TRUE	0	0	0	10	0	TRUE	ACH-000694
TE9_OESOPHAGUS	ELF2--UGT8	7	10	ELF2	3575	chr4:140058784:-	UGT8	29412	chr4:115544035:+	ONLY_REF_SPLICE	YES	32	59	0.35	0.22	0.0754	0.1077	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,UGT8->UDP_glycosyltransferase_8,chr4:115519611-115599380:+	TE9_OESOPHAGUS	0.22	0.35	0.1831	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	USP12--RP11-417J8.1	2	26	USP12	2386	chr13:27690653:-	RP11-417J8.1	17855	chr1:142558448:+	ONLY_REF_SPLICE	YES	29	3	0.49	0.9	0.0215	0.28	USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,RP11-417J8.1->chr1:142553293-142559170:+	TE9_OESOPHAGUS	0.49	0.9	0.3015	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	DIP2A--AP000289.6	6	8	DIP2A	9383	chr21:47931527:+	AP000289.6	46046	chr21:34485035:-	ONLY_REF_SPLICE	YES	1	1	0.93	0.93	0.0646	0.0862	DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A,AP000289.6->chr21:34484005-34496009:-	TE9_OESOPHAGUS	0.93	0.93	0.1508	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	ANKRD11--RP11-104N10.1	7	1	ANKRD11	1317	chr16:89556653:-	RP11-104N10.1	38394	chr16:89570719:-	INCL_NON_REF_SPLICE	YES	1	1	0.89	0.89	0.0754	0.0108	LOCAL_REARRANGEMENT:-:[1456],ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,RP11-104N10.1->chr16:89558425-89570868:-	TE9_OESOPHAGUS	0.89	0.89	0.0862	TRUE	0	1	0	1	1	TRUE	ACH-000694
TE9_OESOPHAGUS	DIP2A--AP000289.6	4	10	DIP2A	9383	chr21:47931527:+	AP000289.6	44808	chr21:34486929:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0431	0.1077	DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A,AP000289.6->chr21:34484005-34496009:-	TE9_OESOPHAGUS	0.93	1	0.1508	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	PLGRKT--IL33	1	22	PLGRKT	5883	chr9:5381863:-	IL33	13133	chr9:6241684:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0108	0.2369	PLGRKT->chr9:5357973-5437878:-,plasminogen_receptor_with_a_C-terminal_lysine,IL33->chr9:6215805-6257983:+,interleukin_33	TE9_OESOPHAGUS	1	1	0.2477	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	LNPEP--RP11-455B3.1	5	1	LNPEP	1781	chr5:96271878:+	RP11-455B3.1	35564	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0539	0.0108	LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase,RP11-455B3.1->chr5:97217124-97258399:+	TE9_OESOPHAGUS	0.75	1	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	LNPEP--RP11-455B3.1	3	1	LNPEP	1781	chr5:96271878:+	RP11-455B3.1	36702	chr5:97235342:+	ONLY_REF_SPLICE	YES	2	1	0.67	0.8	0.0323	0.0108	LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase,RP11-455B3.1->chr5:97217124-97258399:+	TE9_OESOPHAGUS	0.67	0.8	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	TET2--PPA2	3	0	TET2	2105	chr4:106068136:+	PPA2	43024	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[89261],TET2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:106067032-106200973:+,tet_methylcytosine_dioxygenase_2,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	TE9_OESOPHAGUS	1	1	0.0323	TRUE	0	1	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	RP11-114H21.2--CTB-1I21.1	1	7	RP11-114H21.2	2303	chr5:135840382:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0108	0.0754	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	TE9_OESOPHAGUS	0.8	1	0.0862	TRUE	0	0	0	4	0	TRUE	ACH-000694
TE9_OESOPHAGUS	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0.0108	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TE9_OESOPHAGUS	1	1	0.0323	TRUE	0	4	1	7	4	TRUE	ACH-000694
TE9_OESOPHAGUS	CNOT1--LARP4	2	0	CNOT1	1159	chr16:58663632:-	LARP4	69590	chr12:50854918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+	TE9_OESOPHAGUS	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	CTAGE5--PNN	2	0	CTAGE5	18173	chr14:39784003:+	PNN	37277	chr14:39648295:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	LOCAL_REARRANGEMENT:+:[82066],CTAGE5->CTAGE_family_member_5,chr14:39734488-39856156:+,PNN->chr14:39644387-39652422:+,pinin,_desmosome_associated_protein	TE9_OESOPHAGUS	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	SRPK2--LMTK2	2	0	SRPK2	20392	chr7:104773238:-	LMTK2	33502	chr7:97766627:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2	TE9_OESOPHAGUS	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	ZNF519--CHMP1A	2	0	ZNF519	2343	chr18:14124349:-	CHMP1A	27273	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Muscularis=1},ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	TE9_OESOPHAGUS	1	1	0.0215	TRUE	1	2	0	4	2	TRUE	ACH-000694
TE9_OESOPHAGUS	SUFU--GBF1	1	1	SUFU	3620	chr10:104309863:+	GBF1	27009	chr10:104111013:+	ONLY_REF_SPLICE	YES	16	74	0.11	0.03	0.0108	0.0108	{Klijn_CCL:Stomach=1},SUFU->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SUFU_negative_regulator_of_hedgehog_signaling,chr10:104263744-104393292:+,GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1	TE9_OESOPHAGUS	0.03	0.11	0.0216	TRUE	0	3	0	1	3	TRUE	ACH-000694
CAL29_URINARY_TRACT	CDCA5--OR5B12	40	17	CDCA5	3350	chr11:64846825:-	OR5B12	11557	chr11:58207643:-	INCL_NON_REF_SPLICE	YES	140	0	0.29	1	0.3562	0.1514	CDCA5->cell_division_cycle_associated_5,chr11:64833772-64851636:-,OR5B12->chr11:58206593-58207646:-,olfactory_receptor_family_5_subfamily_B_member_12	CAL29_URINARY_TRACT	0.29	1	0.5076	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	PC--AP000439.1	27	1	PC	3864	chr11:66719901:-	AP000439.1	24552	chr11:69242131:+	ONLY_REF_SPLICE	YES	10	0	0.74	1	0.2404	0.0089	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,AP000439.1->chr11:69240458-69244389:+	CAL29_URINARY_TRACT	0.74	1	0.2493	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	TMEM134--CABP4	11	8	TMEM134	2772	chr11:67234972:-	CABP4	11272	chr11:67222905:+	ONLY_REF_SPLICE	YES	294	23	0.06	0.45	0.0979	0.0712	LOCAL_INVERSION:-:+:[5125],TMEM134->chr11:67231824-67236743:-,transmembrane_protein_134,CABP4->calcium_binding_protein_4,chr11:67219877-67226699:+	CAL29_URINARY_TRACT	0.06	0.45	0.1691	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	CDCA5--OR5B12	3	5	CDCA5	1801	chr11:64850836:-	OR5B12	11557	chr11:58207643:-	INCL_NON_REF_SPLICE	YES	109	0	0.07	1	0.0267	0.0445	CDCA5->cell_division_cycle_associated_5,chr11:64833772-64851636:-,OR5B12->chr11:58206593-58207646:-,olfactory_receptor_family_5_subfamily_B_member_12	CAL29_URINARY_TRACT	0.07	1	0.0712	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	DOCK4--RP11-513G19.1	3	2	DOCK4	1310	chr7:111846157:-	RP11-513G19.1	66278	chr12:26572341:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0.0178	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,RP11-513G19.1->chr12:26471886-26574395:+	CAL29_URINARY_TRACT	1	1	0.0445	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	HNRNPM--DOT1L	3	0	HNRNPM	15001	chr19:8548095:+	DOT1L	49047	chr19:2225387:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+	CAL29_URINARY_TRACT	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	LY75--BAZ2B	2	2	LY75	25092	chr2:160706491:-	BAZ2B	54239	chr2:160335232:-	ONLY_REF_SPLICE	YES	24	14	0.14	0.22	0.0178	0.0178	LY75->chr2:160628362-160761260:-,lymphocyte_antigen_75,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	CAL29_URINARY_TRACT	0.14	0.22	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	ARHGEF4--PTMA	2	0	ARHGEF4	1077	chr2:131594565:+	PTMA	29736	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CAL29_URINARY_TRACT	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	QRICH1--RHOA	2	0	QRICH1	1452	chr3:49131345:-	RHOA	21446	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	QRICH1->chr3:49067140-49131796:-,glutamine_rich_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	CAL29_URINARY_TRACT	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	RHOBTB3--GNAS	2	0	RHOBTB3	2421	chr5:95053469:+	GNAS	42114	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	RHOBTB3->Rho_related_BTB_domain_containing_3,chr5:95049226-95160087:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	CAL29_URINARY_TRACT	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	VRK2--U2AF1	2	0	VRK2	9971	chr2:58276102:+	U2AF1	37933	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	CAL29_URINARY_TRACT	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	VWDE--PHF14	2	0	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CAL29_URINARY_TRACT	1	1	0.0178	TRUE	0	6	0	17	2	TRUE	ACH-000142
CAL29_URINARY_TRACT	JMJD1C--REEP3	1	1	JMJD1C	2633	chr10:65140078:-	REEP3	36225	chr10:65326098:+	ONLY_REF_SPLICE	YES	3	31	0.4	0.06	0.0089	0.0089	LOCAL_INVERSION:-:+:[55401],JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,REEP3->chr10:65281123-65384883:+,receptor_accessory_protein_3	CAL29_URINARY_TRACT	0.06	0.4	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000142
NCIH2882_LUNG	RP11-204C23.1--RP11-450H5.1	24	27	RP11-204C23.1	2338	chr3:2004084:-	RP11-450H5.1	5763	chr3:166288146:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.252	0.2835	RP11-204C23.1->chr3:2004065-2029154:-,RP11-450H5.1->chr3:166287481-166288551:-	NCIH2882_LUNG	1	1	0.5355	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	RMDN3--INO80	26	18	RMDN3	2255	chr15:41046795:-	INO80	29953	chr15:41352124:-	ONLY_REF_SPLICE	YES	182	28	0.19	0.61	0.273	0.189	RMDN3->chr15:41028082-41048049:-,regulator_of_microtubule_dynamics_3,INO80->INO80_complex_subunit,chr15:41271078-41408552:-	NCIH2882_LUNG	0.19	0.61	0.462	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	ZNF235--AC011526.1	21	15	ZNF235	4334	chr19:44802961:-	AC011526.1	20648	chr19:41985192:-	ONLY_REF_SPLICE	YES	22	0	0.62	1	0.2205	0.1575	ZNF235->chr19:44732882-44809199:-,zinc_finger_protein_235,AC011526.1->chr19:41960074-42006559:-	NCIH2882_LUNG	0.62	1	0.378	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	RP11-204C23.1--RP11-450H5.1	15	32	RP11-204C23.1	2338	chr3:2004084:-	RP11-450H5.1	5360	chr3:166288549:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1575	0.3359	RP11-204C23.1->chr3:2004065-2029154:-,RP11-450H5.1->chr3:166287481-166288551:-	NCIH2882_LUNG	1	1	0.4934	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	ZNF235--AC011526.1	14	15	ZNF235	4322	chr19:44802973:-	AC011526.1	20648	chr19:41985192:-	INCL_NON_REF_SPLICE	YES	23	0	0.56	1	0.147	0.1575	ZNF235->chr19:44732882-44809199:-,zinc_finger_protein_235,AC011526.1->chr19:41960074-42006559:-	NCIH2882_LUNG	0.56	1	0.3045	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	BBX--DCBLD2	12	12	BBX	4463	chr3:107245245:+	DCBLD2	52451	chr3:98544210:-	ONLY_REF_SPLICE	YES	37	166	0.39	0.13	0.126	0.126	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2	NCIH2882_LUNG	0.13	0.39	0.252	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	SLC12A4--PRMT7	11	14	SLC12A4	8083	chr16:67991645:-	PRMT7	34936	chr16:68379578:+	ONLY_REF_SPLICE	YES	53	120	0.32	0.17	0.1155	0.147	SLC12A4->chr16:67977377-68003504:-,solute_carrier_family_12_member_4,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	NCIH2882_LUNG	0.17	0.32	0.2625	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	ZCCHC10--HSPA4	12	0	ZCCHC10	1108	chr5:132362189:-	HSPA4	13947	chr5:132400672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.126	0	LOCAL_INVERSION:-:+:[25358],ZCCHC10->chr5:132332677-132362296:-,zinc_finger_CCHC-type_containing_10,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	NCIH2882_LUNG	1	1	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	VPS35--CMIP	9	9	VPS35	12653	chr16:46705617:-	CMIP	27412	chr16:81641172:+	ONLY_REF_SPLICE	YES	232	58	0.07	0.24	0.0945	0.0945	VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-,CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+	NCIH2882_LUNG	0.07	0.24	0.189	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	EHMT2--ZBTB12	7	10	EHMT2	2425	chr6:31864040:-	ZBTB12	19449	chr6:31869102:-	ONLY_REF_SPLICE	YES	187	4	0.08	0.81	0.0735	0.105	LOCAL_REARRANGEMENT:-:[1920],EHMT2->chr6:31847536-31865464:-,euchromatic_histone-lysine_N-methyltransferase_2,ZBTB12->chr6:31867384-31869769:-,zinc_finger_and_BTB_domain_containing_12	NCIH2882_LUNG	0.08	0.81	0.1785	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	SLC12A4--PRMT7	5	6	SLC12A4	6780	chr16:67995478:-	PRMT7	34936	chr16:68379578:+	ONLY_REF_SPLICE	YES	65	120	0.14	0.08	0.0525	0.063	SLC12A4->chr16:67977377-68003504:-,solute_carrier_family_12_member_4,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	NCIH2882_LUNG	0.08	0.14	0.1155	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	EPS15L1--CHAF1A	3	0	EPS15L1	1173	chr19:16582724:-	CHAF1A	34866	chr19:4405909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1,CHAF1A->chr19:4402659-4445015:+,chromatin_assembly_factor_1_subunit_A	NCIH2882_LUNG	1	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	ZCCHC10--HSPA4	3	0	ZCCHC10	2178	chr5:132358533:-	HSPA4	13947	chr5:132400672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	LOCAL_INVERSION:-:+:[25358],ZCCHC10->chr5:132332677-132362296:-,zinc_finger_CCHC-type_containing_10,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	NCIH2882_LUNG	1	1	0.0315	TRUE	0	0	0	2	0	TRUE	ACH-000700
NCIH2882_LUNG	RP11-204C23.1--RP11-450H5.1	1	6	RP11-204C23.1	1102	chr3:2029053:-	RP11-450H5.1	5763	chr3:166288146:-	ONLY_REF_SPLICE	NO	39	0	0.15	1	0.0105	0.063	RP11-204C23.1->chr3:2004065-2029154:-,RP11-450H5.1->chr3:166287481-166288551:-	NCIH2882_LUNG	0.15	1	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	BDP1--ANAPC1	2	0	BDP1	7182	chr5:70763314:+	ANAPC1	75792	chr2:112580177:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	BDP1->B_double_prime_1,_subunit_of_RNA_polymerase_III_transcription_initiation_factor_IIIB,chr5:70751442-70863649:+,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	NCIH2882_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH2882_LUNG	1	1	0.021	TRUE	1	10	0	18	0	TRUE	ACH-000700
NCIH2882_LUNG	RP11-152P17.2--EIF3H	2	0	RP11-152P17.2	1144	chr8:107072609:-	EIF3H	24759	chr8:117671219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	RP11-152P17.2->chr8:106792474-107072752:-,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	NCIH2882_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	ZBTB49--APLP2	2	0	ZBTB49	2327	chr4:4301824:+	APLP2	24709	chr11:129996595:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	ZBTB49->chr4:4291924-4323513:+,zinc_finger_and_BTB_domain_containing_49,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	NCIH2882_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	ZEB1--GNAS	2	0	ZEB1	1798	chr10:31608221:+	GNAS	44891	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2882_LUNG	1	1	0.021	TRUE	0	1	0	2	1	TRUE	ACH-000700
NCIH2882_LUNG	RP11-163F15.1--RP11-215N21.1	1	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0105	0.0105	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	NCIH2882_LUNG	0.67	1	0.021	TRUE	0	5	0	7	5	TRUE	ACH-000700
SW1116_LARGE_INTESTINE	AMDHD2--EFCAB4A	4	0	AMDHD2	5340	chr16:2579653:+	EFCAB4A	14227	chr11:830260:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	AMDHD2->amidohydrolase_domain_containing_2,chr16:2570358-2581423:+,EFCAB4A->chr11:826144-831991:+	SW1116_LARGE_INTESTINE	1	1	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	UBXN1--C2orf15	4	0	UBXN1	1591	chr11:62445977:-	C2orf15	13999	chr2:99811274:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	UBXN1->UBX_domain_protein_1,chr11:62443970-62446567:-,C2orf15->chr2:99757948-99939204:+,chromosome_2_open_reading_frame_15	SW1116_LARGE_INTESTINE	1	1	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	AC018737.1--PSMB1	3	0	AC018737.1	1262	chr2:122407487:+	PSMB1	10976	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0499	0	AC018737.1->chr2:122407226-122485784:+,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	C22orf29--VPS41	3	0	C22orf29	4407	chr22:19838057:-	VPS41	16129	chr7:38908849:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	C22orf29->chr22:19833661-19842419:-,chromosome_22_open_reading_frame_29,VPS41->VPS41,_HOPS_complex_subunit,chr7:38762563-38971994:-	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	DDX17--TPD52L2	3	0	DDX17	17081	chr22:38881997:-	TPD52L2	32306	chr20:62521442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	GTEx&tcga_normals:1/3694=0.03%,DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-,TPD52L2->chr20:62496596-62522898:+,tumor_protein_D52_like_2	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	RNF44--CASKIN2	3	0	RNF44	6400	chr5:175957148:-	CASKIN2	23152	chr17:73498099:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	RNF44->chr5:175953698-175965026:-,ring_finger_protein_44,CASKIN2->CASK_interacting_protein_2,chr17:73496342-73511664:-	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	SLC9A1--TPPP	3	0	SLC9A1	15029	chr1:27425685:-	TPPP	22096	chr5:664984:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	SLC9A1->chr1:27425306-27493472:-,solute_carrier_family_9_member_A1,TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	STAU1--KRT8	3	0	STAU1	8682	chr20:47768191:-	KRT8	33154	chr12:53292668:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1,KRT8->chr12:53290977-53343738:-,keratin_8	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	TGFBI--ZMIZ2	3	0	TGFBI	19112	chr5:135399183:+	ZMIZ2	37560	chr7:44807562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced,ZMIZ2->chr7:44788180-44809477:+,zinc_finger_MIZ-type_containing_2	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	TMBIM1--VCP	3	0	TMBIM1	7141	chr2:219146805:-	VCP	28657	chr9:35059788:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	TMBIM1->chr2:219138915-219157309:-,transmembrane_BAX_inhibitor_motif_containing_1,VCP->chr9:35056061-35073246:-,valosin_containing_protein	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	ATP5C1--ZFAS1	2	0	ATP5C1	7637	chr10:7844817:+	ZFAS1	16866	chr20:47905582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+,ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	CALM2--HSP90AA1	2	0	CALM2	1161	chr2:47403580:-	HSP90AA1	18412	chr14:102552715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	CYP3A5--EIF4G2	2	0	CYP3A5	2635	chr7:99273738:-	EIF4G2	29620	chr11:10822634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	CYP3A5->chr7:99245817-99277621:-,cytochrome_P450_family_3_subfamily_A_member_5,EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	IVNS1ABP--LRBA	2	0	IVNS1ABP	1377	chr1:185286085:-	LRBA	58765	chr4:151520283:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	MED31--DHX8	2	0	MED31	1134	chr17:6554821:-	DHX8	25985	chr17:41597498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	MED31->chr17:6546635-6554954:-,mediator_complex_subunit_31,DHX8->DEAH-box_helicase_8,chr17:41561233-41621831:+	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	TRAPPC9--ZNF706	2	0	TRAPPC9	10586	chr8:141381063:-	ZNF706	71707	chr8:102213971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	WDR45--GABPA	2	0	WDR45	1589	chrX:48957520:-	GABPA	15159	chr21:27113884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	WDR45->WD_repeat_domain_45,chrX:48929385-48958108:-,GABPA->GA_binding_protein_transcription_factor_alpha_subunit,chr21:27106881-27144771:+	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	ZFAS1--PHACTR4	2	0	ZFAS1	3117	chr20:47897107:+	PHACTR4	9805	chr1:28733921:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	ZNF462--SMC2	1	3	ZNF462	1259	chr9:109625636:+	SMC2	32174	chr9:106860727:+	ONLY_REF_SPLICE	YES	0	8	1	0.33	0.0166	0.0499	ZNF462->chr9:109625378-109775915:+,zinc_finger_protein_462,SMC2->chr9:106856541-106903698:+,structural_maintenance_of_chromosomes_2	SW1116_LARGE_INTESTINE	0.33	1	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000489
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	512	168	RFTN1	18032	chr3:16364883:-	PVT1	46280	chr8:129108764:+	ONLY_REF_SPLICE	YES	618	97	0.52	0.88	4.708	1.5448	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.88	6.2528	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED20--C6orf132	69	10	MED20	1135	chr6:41888743:-	C6orf132	15988	chr6:42078029:-	ONLY_REF_SPLICE	YES	7	0	0.92	1	0.6345	0.092	MED20->chr6:41873092-41888877:-,mediator_complex_subunit_20,C6orf132->chr6:42068856-42110357:-,chromosome_6_open_reading_frame_132	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.7265	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	29	163	RFTN1	18032	chr3:16364883:-	PVT1	46283	chr8:129108767:+	ONLY_REF_SPLICE	YES	618	96	0.24	0.67	0.2667	1.4988	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.67	1.7655	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	45	50	RFTN1	15846	chr3:16399439:-	PVT1	46280	chr8:129108764:+	ONLY_REF_SPLICE	YES	525	97	0.15	0.49	0.4138	0.4598	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.49	0.8736	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A1--RP11-218I7.2	33	8	SLC1A1	1327	chr9:4490770:+	RP11-218I7.2	20593	chr9:6066365:+	ONLY_REF_SPLICE	YES	11	0	0.79	1	0.3034	0.0736	SLC1A1->chr9:4490444-4587469:+,solute_carrier_family_1_member_1,RP11-218I7.2->chr9:6047360-6066714:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.377	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	2	93	RFTN1	16950	chr3:16368280:-	PVT1	46280	chr8:129108764:+	ONLY_REF_SPLICE	YES	573	97	0.14	0.49	0.0184	0.8552	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.49	0.8736	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--RPL32	16	0	IGL@	57592	chr22:23222950:+	RPL32	74787	chr3:12883040:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1471	0	IGL@->Oncogene{Bushman},RPL32->chr3:12875984-12883087:-,ribosomal_protein_L32	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1471	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	6	39	RFTN1	18032	chr3:16364883:-	PVT1	48937	chr8:129113226:+	ONLY_REF_SPLICE	YES	618	136	0.07	0.25	0.0552	0.3586	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.25	0.4138	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	3	48	RFTN1	15846	chr3:16399439:-	PVT1	46283	chr8:129108767:+	ONLY_REF_SPLICE	YES	525	96	0.09	0.35	0.0276	0.4414	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.35	0.469	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	7	20	RFTN1	14730	chr3:16411583:-	PVT1	46280	chr8:129108764:+	ONLY_REF_SPLICE	YES	537	97	0.05	0.22	0.0644	0.1839	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.22	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A1--IL33	9	1	SLC1A1	1327	chr9:4490770:+	IL33	20494	chr9:6241684:+	ONLY_REF_SPLICE	YES	11	0	0.48	1	0.0828	0.0092	SLC1A1->chr9:4490444-4587469:+,solute_carrier_family_1_member_1,IL33->chr9:6215805-6257983:+,interleukin_33	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.092	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--ALDOA	9	0	RPS3	6203	chr11:75115732:+	ALDOA	22177	chr16:30079967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0828	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4XP8	5	0	IGH@	97640	chr14:106321054:-	TMSB4XP8	131814	chr4:91760251:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	IGH@->Oncogene{Bushman},TMSB4XP8->chr4:91759652-91760263:-,thymosin_beta_4,_X-linked_pseudogene_8	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.046	TRUE	0	0	0	3	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLRC4--ITPR2	3	0	KLRC4	3122	chr12:10560235:-	ITPR2	26148	chr12:26808785:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	KLRC4->chr12:10559983-10562356:-,killer_cell_lectin_like_receptor_C4,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOP58--CASP10	3	0	NOP58	1271	chr2:203130709:+	CASP10	27857	chr2:202068453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+,CASP10->caspase_10,chr2:202047604-202094129:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--ACTG1	3	0	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	TRUE	0	0	0	11	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BANP--CTBP1	2	0	BANP	3272	chr16:87985121:+	CTBP1	37969	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRE--FASTKD5	2	0	BRE	4120	chr2:28117551:+	FASTKD5	23989	chr20:3129906:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,FASTKD5->FAST_kinase_domains_5,chr20:3127165-3140543:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PRKAG1	2	0	C17orf76-AS1	1593	chr17:16342728:+	PRKAG1	16794	chr12:49406893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	C17orf76-AS1->chr17:16342136-16381992:+,PRKAG1->chr12:49396057-49412980:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_1	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CABIN1--SKA2	2	0	CABIN1	29373	chr22:24494155:+	SKA2	57016	chr17:57189706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+,SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD22--ALDOA	2	0	CD22	2739	chr19:35820133:+	ALDOA	27242	chr16:30079967:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	CD22->CD22_molecule,chr19:35810164-35838258:+,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRSX--PSMG3	2	0	DHRSX	9490	chrX:2184781:-	PSMG3	19432	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOT1L--DAZAP1	2	0	DOT1L	1117	chr19:2164264:+	DAZAP1	41573	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAN2B1--TRIM65	2	0	MAN2B1	5543	chr19:12772074:-	TRIM65	25615	chr17:73876710:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	MAN2B1->chr19:12757325-12777556:-,mannosidase_alpha_class_2B_member_1,TRIM65->chr17:73876416-73893084:-,tripartite_motif_containing_65	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MATR3--MAD1L1	2	0	MATR3	9772	chr5:138629494:+	MAD1L1	52120	chr7:2188873:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	MATR3->chr5:138609441-138667360:+,matrin_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB3GAP2--ARID4B	2	0	RAB3GAP2	9418	chr1:220386229:-	ARID4B	52364	chr1:235394504:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RAB3GAP2->RAB3_GTPase_activating_non-catalytic_protein_subunit_2,chr1:220321635-220445796:-,ARID4B->AT-rich_interaction_domain_4B,chr1:235294949-235491534:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	2	0	RFTN1	3399	chr3:16535232:-	PVT1	46280	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-656D10.3--NFYC	2	0	RP11-656D10.3	1073	chr1:40974261:-	NFYC	15719	chr1:41204508:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RP11-656D10.3->chr1:40958829-40974333:-,NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLR8-AS1--DNAJC14	2	0	TLR8-AS1	2180	chrX:12924309:-	DNAJC14	9460	chr12:56222498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	TLR8-AS1->TLR8_antisense_RNA_1,chrX:12920936-12926452:-,DNAJC14->DnaJ_heat_shock_protein_family_(Hsp40)_member_C14,chr12:56214744-56224608:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAV2--BRD3	2	0	VAV2	1530	chr9:136857197:-	BRD3	42940	chr9:136918712:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[37701],VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,BRD3->Oncogene{Bushman},bromodomain_containing_3,chr9:136895427-136933657:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	2	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLCS--TTC3	1	1	HLCS	13330	chr21:38269160:-	TTC3	32150	chr21:38459547:+	ONLY_REF_SPLICE	NO	12	27	0.14	0.07	0.0092	0.0092	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},LOCAL_INVERSION:-:+:[82990],HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.14	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
TE6_OESOPHAGUS	TMX2--SHANK2	76	38	TMX2	1208	chr11:57480279:+	SHANK2	14214	chr11:70858384:-	ONLY_REF_SPLICE	YES	54	1	0.68	0.99	1.033	0.5165	TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	TE6_OESOPHAGUS	0.68	0.99	1.5495	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	HCG18--EMILIN2	15	0	HCG18	1797	chr6:30294131:-	EMILIN2	25997	chr18:2890559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2039	0	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,EMILIN2->chr18:2847028-2915991:+,elastin_microfibril_interfacer_2	TE6_OESOPHAGUS	1	1	0.2039	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	TMX2--SHANK2	4	38	TMX2	1208	chr11:57480279:+	SHANK2	14220	chr11:70858378:-	INCL_NON_REF_SPLICE	YES	54	1	0.44	0.98	0.0544	0.5165	TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	TE6_OESOPHAGUS	0.44	0.98	0.5709	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	CLYBL--UBAC2	13	1	CLYBL	1093	chr13:100259011:+	UBAC2	29794	chr13:99966351:+	ONLY_REF_SPLICE	YES	0	27	1	0.34	0.1767	0.0136	CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like,UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+	TE6_OESOPHAGUS	0.34	1	0.1903	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	HCG18--EMILIN2	10	7	HCG18	3356	chr6:30282046:-	EMILIN2	25997	chr18:2890559:+	ONLY_REF_SPLICE	YES	6	0	0.74	1	0.1359	0.0951	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,EMILIN2->chr18:2847028-2915991:+,elastin_microfibril_interfacer_2	TE6_OESOPHAGUS	0.74	1	0.231	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	HCG18--EMILIN2	10	3	HCG18	2142	chr6:30293786:-	EMILIN2	25997	chr18:2890559:+	ONLY_REF_SPLICE	YES	10	0	0.57	1	0.1359	0.0408	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,EMILIN2->chr18:2847028-2915991:+,elastin_microfibril_interfacer_2	TE6_OESOPHAGUS	0.57	1	0.1767	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	MEIS2--C15orf41	7	6	MEIS2	13726	chr15:37242525:-	C15orf41	52960	chr15:37100525:+	ONLY_REF_SPLICE	YES	9	17	0.59	0.43	0.0951	0.0815	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:-:+:[78957],MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,C15orf41->chr15:36871812-37102449:+,chromosome_15_open_reading_frame_41	TE6_OESOPHAGUS	0.43	0.59	0.1766	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	DIP2B--ZNF717	7	3	DIP2B	5613	chr12:51054102:+	ZNF717	51585	chr3:75791016:-	ONLY_REF_SPLICE	YES	12	6	0.45	0.62	0.0951	0.0408	DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B,ZNF717->chr3:75758794-75834734:-,zinc_finger_protein_717	TE6_OESOPHAGUS	0.45	0.62	0.1359	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	TTC6--MIPOL1	5	3	TTC6	2242	chr14:38075947:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	1	10	0.89	0.44	0.068	0.0408	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	TE6_OESOPHAGUS	0.44	0.89	0.1088	TRUE	0	3	0	4	3	TRUE	ACH-000605
TE6_OESOPHAGUS	TTC6--MIPOL1	5	1	TTC6	2242	chr14:38075947:+	MIPOL1	77335	chr14:37892060:+	ONLY_REF_SPLICE	YES	1	11	0.86	0.35	0.068	0.0136	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	TE6_OESOPHAGUS	0.35	0.86	0.0816	TRUE	0	4	0	4	2	TRUE	ACH-000605
TE6_OESOPHAGUS	LIMD1-AS1--PTER	4	0	LIMD1-AS1	3110	chr3:45721213:-	PTER	14362	chr10:16555003:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	LIMD1-AS1->LIMD1_antisense_RNA_1,chr3:45720535-45730626:-,PTER->chr10:16478942-16555736:+,phosphotriesterase_related	TE6_OESOPHAGUS	1	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	DHCR7--DDB1	3	0	DHCR7	11432	chr11:71145954:-	DDB1	43332	chr11:61067480:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	DHCR7->7-dehydrocholesterol_reductase,chr11:71139239-71163914:-,DDB1->chr11:61066923-61110068:-,damage_specific_DNA_binding_protein_1	TE6_OESOPHAGUS	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	HNRNPAB--GPI	3	0	HNRNPAB	1519	chr5:177632026:+	GPI	12621	chr19:34857295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	HNRNPAB->chr5:177631508-177638164:+,heterogeneous_nuclear_ribonucleoprotein_A/B,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	TE6_OESOPHAGUS	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	NUMA1--SRRM1	3	0	NUMA1	37402	chr11:71715301:-	SRRM1	52111	chr1:24976532:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	TE6_OESOPHAGUS	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	TMX2--SHANK2	2	4	TMX2	1208	chr11:57480279:+	SHANK2	15433	chr11:70830078:-	ONLY_REF_SPLICE	YES	54	18	0.1	0.25	0.0272	0.0544	TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	TE6_OESOPHAGUS	0.1	0.25	0.0816	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	ARHGAP19--GTPBP1	2	0	ARHGAP19	1085	chr10:99052329:-	GTPBP1	25012	chr22:39104850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	ARHGAP19->Rho_GTPase_activating_protein_19,chr10:98978996-99052413:-,GTPBP1->GTP_binding_protein_1,chr22:39101728-39134304:+	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	BCAR3--ITPA	2	0	BCAR3	1081	chr1:94312626:-	ITPA	35631	chr20:3202487:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ITPA->chr20:3189514-3204516:+,inosine_triphosphatase	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	C7orf10--YLPM1	2	0	C7orf10	20736	chr7:40789096:+	YLPM1	50270	chr14:75295916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	C7orf10->chr7:40174575-40900362:+,YLPM1->YLP_motif_containing_1,chr14:75230069-75322244:+	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	CCDC130--DPH1	2	0	CCDC130	1526	chr19:13843099:+	DPH1	25065	chr17:1945899:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	CCDC130->chr19:13842574-13874110:+,coiled-coil_domain_containing_130,DPH1->Oncogene{Bushman},chr17:1933404-1946724:+,diphthamide_biosynthesis_1	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	CDKL1--SPG20	2	0	CDKL1	5175	chr14:50862419:-	SPG20	33675	chr13:36910495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	CDKL1->chr14:50796310-50883179:-,cyclin_dependent_kinase_like_1,SPG20->chr13:36875775-36944317:-,spastic_paraplegia_20_(Troyer_syndrome)	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	COL4A5--FUT10	2	0	COL4A5	21534	chrX:107840798:+	FUT10	66785	chr8:33230322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	COL4A5->chrX:107683074-107940775:+,collagen_type_IV_alpha_5,FUT10->chr8:33228342-33330940:-,fucosyltransferase_10	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	COL4A6--TIAL1	2	0	COL4A6	23295	chrX:107433622:-	TIAL1	61499	chr10:121336262:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	COL4A6->chrX:107386780-107682727:-,collagen_type_IV_alpha_6,TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	CPT1A--AP1G1	2	0	CPT1A	2423	chr11:68609243:-	AP1G1	47226	chr16:71790062:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-,AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	CSTA--PDIA5	2	0	CSTA	2217	chr3:122056495:+	PDIA5	24931	chr3:122928046:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	CSTA->Oncogene{Bushman},chr3:122044091-122060819:+,cystatin_A,PDIA5->chr3:122785909-122944074:+,protein_disulfide_isomerase_family_A_member_5	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	DEGS1--PHF21A	2	0	DEGS1	2440	chr1:224371120:+	PHF21A	15057	chr11:46113774:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1,PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	FXR1--GMPS	2	0	FXR1	3131	chr3:180630524:+	GMPS	34231	chr3:155611307:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+,GMPS->Oncogene{Bushman},chr3:155588325-155661815:+,guanine_monophosphate_synthase	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	HAPLN3--CPNE3	2	0	HAPLN3	4847	chr15:89424588:-	CPNE3	13989	chr8:87527690:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	HAPLN3->chr15:89420519-89438857:-,hyaluronan_and_proteoglycan_link_protein_3,CPNE3->chr8:87497059-87573726:+,copine_3	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	LSR--FXYD3	2	0	LSR	4450	chr19:35749967:+	FXYD3	18941	chr19:35613669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	LSR->chr19:35739233-35758867:+,lipolysis_stimulated_lipoprotein_receptor,FXYD3->FXYD_domain_containing_ion_transport_regulator_3,chr19:35606732-35615228:+	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	8	1	1	2	TRUE	ACH-000605
TE6_OESOPHAGUS	MEIS2--C15orf41	1	4	MEIS2	12226	chr15:37329015:-	C15orf41	52960	chr15:37100525:+	ONLY_REF_SPLICE	YES	13	17	0.28	0.23	0.0136	0.0544	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:-:+:[78957],MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,C15orf41->chr15:36871812-37102449:+,chromosome_15_open_reading_frame_41	TE6_OESOPHAGUS	0.23	0.28	0.068	TRUE	0	1	0	4	1	TRUE	ACH-000605
TE6_OESOPHAGUS	NCOR2--RPLP1	2	0	NCOR2	33723	chr12:124838639:-	RPLP1	62120	chr15:69747509:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	OSBPL2--ZC3H14	2	0	OSBPL2	4460	chr20:60838747:+	ZC3H14	29171	chr14:89041037:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	PLEKHA7--TTC17	2	0	PLEKHA7	10153	chr11:16863094:-	TTC17	40103	chr11:43413015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	PLEKHA7->chr11:16799842-17035990:-,pleckstrin_homology_domain_containing_A7,TTC17->chr11:43380482-43516483:+,tetratricopeptide_repeat_domain_17	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	POFUT2--SKIL	2	0	POFUT2	9316	chr21:46687505:-	SKIL	18000	chr3:170077487:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	POFUT2->chr21:46683843-46707813:-,protein_O-fucosyltransferase_2,SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	PVT1--SUMF1	2	0	PVT1	8346	chr8:128903244:+	SUMF1	37269	chr3:4403938:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	RP11-152F13.7--SNX5	2	0	RP11-152F13.7	4756	chr15:82972259:+	SNX5	12305	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RP11-152F13.7->chr15:82944773-82974312:+,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	TCHP--SETDB1	2	0	TCHP	10436	chr12:110350877:+	SETDB1	40943	chr1:150923841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	TCHP->chr12:110338069-110421646:+,trichoplein_keratin_filament_binding,SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	TLE3--AKAP13	2	0	TLE3	19985	chr15:70343730:-	AKAP13	31385	chr15:86064659:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	TLE3->chr15:70340129-70390515:-,transducin_like_enhancer_of_split_3,AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	ZMPSTE24--MACF1	2	0	ZMPSTE24	3573	chr1:40726657:+	MACF1	36863	chr1:39747880:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	ZNF263--SEPT9	2	0	ZNF263	1141	chr16:3313883:+	SEPT9	52401	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	ZNF263->chr16:3313743-3351401:+,zinc_finger_protein_263,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	TTC6--MIPOL1	1	2	TTC6	1162	chr14:38065213:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	NO	1	10	0.75	0.23	0.0136	0.0272	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	TE6_OESOPHAGUS	0.23	0.75	0.0408	TRUE	0	3	0	4	2	TRUE	ACH-000605
IGR1_SKIN	AC145110.1--RP11-599B13.3	620	552	AC145110.1	1271	chr8:29606095:+	RP11-599B13.3	13197	chr17:7960940:-	INCL_NON_REF_SPLICE	YES	17	0	0.99	1	8.0575	7.1737	AC145110.1->chr8:29605825-29656008:+,RP11-599B13.3->chr17:7959543-7960939:-	IGR1_SKIN	0.99	1	15.2312	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	AC145110.1--RP11-599B13.3	424	466	AC145110.1	1271	chr8:29606095:+	RP11-599B13.3	14128	chr17:7960009:-	ONLY_REF_SPLICE	YES	17	0	0.98	1	5.5103	6.0561	AC145110.1->chr8:29605825-29656008:+,RP11-599B13.3->chr17:7959543-7960939:-	IGR1_SKIN	0.98	1	11.5664	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	PQLC2--RP3-329E20.2	141	70	PQLC2	2806	chr1:19644335:+	RP3-329E20.2	12241	chr1:21593341:+	ONLY_REF_SPLICE	YES	98	3	0.68	0.99	1.8324	0.9097	PQLC2->PQ_loop_repeat_containing_2,chr1:19638820-19655794:+,RP3-329E20.2->chr1:21592575-21593744:+	IGR1_SKIN	0.68	0.99	2.7421	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	AC145110.1--RP11-599B13.3	4	466	AC145110.1	2581	chr8:29607405:+	RP11-599B13.3	14128	chr17:7960009:-	INCL_NON_REF_SPLICE	YES	22	0	0.96	1	0.052	6.0561	AC145110.1->chr8:29605825-29656008:+,RP11-599B13.3->chr17:7959543-7960939:-	IGR1_SKIN	0.96	1	6.1081	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	WIPI1--SLC16A5	95	60	WIPI1	5658	chr17:66440634:-	SLC16A5	23632	chr17:73089684:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	1.2346	0.7798	WIPI1->WD_repeat_domain,_phosphoinositide_interacting_1,chr17:66417089-66453654:-,SLC16A5->chr17:73083822-73102257:+,solute_carrier_family_16_member_5	IGR1_SKIN	0.99	1	2.0144	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	KDM5A--LINC01054	53	20	KDM5A	18084	chr12:438001:-	LINC01054	43723	chr13:115096253:-	ONLY_REF_SPLICE	YES	31	0	0.7	1	0.6888	0.2599	KDM5A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:389295-498620:-,lysine_demethylase_5A,LINC01054->chr13:115095034-115099423:-,long_intergenic_non-protein_coding_RNA_1054	IGR1_SKIN	0.7	1	0.9487	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	ITCH--RP11-410N8.1	44	6	ITCH	15725	chr20:33045279:+	RP11-410N8.1	35404	chr20:31181495:+	ONLY_REF_SPLICE	YES	36	0	0.58	1	0.5718	0.078	ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,RP11-410N8.1->chr20:31169765-31181702:+	IGR1_SKIN	0.58	1	0.6498	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	PQLC2--RP3-329E20.2	3	73	PQLC2	2806	chr1:19644335:+	RP3-329E20.2	11959	chr1:21593059:+	INCL_NON_REF_SPLICE	YES	98	3	0.44	0.96	0.039	0.9487	PQLC2->PQ_loop_repeat_containing_2,chr1:19638820-19655794:+,RP3-329E20.2->chr1:21592575-21593744:+	IGR1_SKIN	0.44	0.96	0.9877	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	SNAP25--DLGAP4	19	9	SNAP25	9316	chr20:10280060:+	DLGAP4	34868	chr20:35152653:+	ONLY_REF_SPLICE	YES	19	105	0.6	0.21	0.2469	0.117	SNAP25->chr20:10199478-10288066:+,synaptosome_associated_protein_25kDa,DLGAP4->chr20:34894258-35157040:+,discs_large_homolog_associated_protein_4	IGR1_SKIN	0.21	0.6	0.3639	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	PQLC2--RP3-329E20.2	1	74	PQLC2	2806	chr1:19644335:+	RP3-329E20.2	11883	chr1:21592983:+	ONLY_REF_SPLICE	YES	98	0	0.43	1	0.013	0.9617	PQLC2->PQ_loop_repeat_containing_2,chr1:19638820-19655794:+,RP3-329E20.2->chr1:21592575-21593744:+	IGR1_SKIN	0.43	1	0.9747	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	ECE1--AKR7A2	16	9	ECE1	8534	chr1:21599192:-	AKR7A2	33089	chr1:19635136:-	ONLY_REF_SPLICE	YES	55	345	0.31	0.07	0.2079	0.117	ECE1->chr1:21543740-21671997:-,endothelin_converting_enzyme_1,AKR7A2->aldo-keto_reductase_family_7,_member_A2,chr1:19630459-19638640:-	IGR1_SKIN	0.07	0.31	0.3249	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	WIPI1--SLC16A5	3	59	WIPI1	5658	chr17:66440634:-	SLC16A5	23636	chr17:73089688:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.039	0.7668	WIPI1->WD_repeat_domain,_phosphoinositide_interacting_1,chr17:66417089-66453654:-,SLC16A5->chr17:73083822-73102257:+,solute_carrier_family_16_member_5	IGR1_SKIN	0.98	1	0.8058	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	VRK2--PUS10	11	10	VRK2	9971	chr2:58276102:+	PUS10	29633	chr2:61239040:-	ONLY_REF_SPLICE	YES	35	0	0.38	1	0.143	0.13	VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2,PUS10->Oncogene{Bushman},chr2:61167357-61245394:-,pseudouridylate_synthase_10	IGR1_SKIN	0.38	1	0.273	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	ITCH--RP11-410N8.4	8	10	ITCH	15725	chr20:33045279:+	RP11-410N8.4	35320	chr20:31189315:+	ONLY_REF_SPLICE	YES	36	0	0.33	1	0.104	0.13	ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,RP11-410N8.4->chr20:31175281-31196695:+	IGR1_SKIN	0.33	1	0.234	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	COPS2--SHC4	7	0	COPS2	1137	chr15:49447722:-	SHC4	21202	chr15:49217146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.091	0	GTEx&tcga_normals:1/3694=0.03%,COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	IGR1_SKIN	1	1	0.091	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	WIPI1--SLC16A5	2	18	WIPI1	5658	chr17:66440634:-	SLC16A5	24879	chr17:73094133:+	ONLY_REF_SPLICE	YES	0	44	1	0.31	0.026	0.2339	WIPI1->WD_repeat_domain,_phosphoinositide_interacting_1,chr17:66417089-66453654:-,SLC16A5->chr17:73083822-73102257:+,solute_carrier_family_16_member_5	IGR1_SKIN	0.31	1	0.2599	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	ITCH--RP11-410N8.4	4	7	ITCH	15725	chr20:33045279:+	RP11-410N8.4	35356	chr20:31189351:+	INCL_NON_REF_SPLICE	YES	36	0	0.23	1	0.052	0.091	ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,RP11-410N8.4->chr20:31175281-31196695:+	IGR1_SKIN	0.23	1	0.143	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	BNC2--LINC00032	5	2	BNC2	1198	chr9:16870644:-	LINC00032	34229	chr9:27278726:-	ONLY_REF_SPLICE	YES	2	1	0.78	0.88	0.065	0.026	BNC2->basonuclin_2,chr9:16409501-16870841:-,LINC00032->chr9:27245682-27282791:-,long_intergenic_non-protein_coding_RNA_32	IGR1_SKIN	0.78	0.88	0.091	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	AP003900.6--AC011718.2	5	1	AP003900.6	2187	chr21:11172043:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	2	9	0.75	0.4	0.065	0.013	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	IGR1_SKIN	0.4	0.75	0.078	TRUE	0	0	0	4	0	TRUE	ACH-000882
IGR1_SKIN	BNC2--LINC00032	5	0	BNC2	1198	chr9:16870644:-	LINC00032	41619	chr9:27263263:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	BNC2->basonuclin_2,chr9:16409501-16870841:-,LINC00032->chr9:27245682-27282791:-,long_intergenic_non-protein_coding_RNA_32	IGR1_SKIN	1	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	BNC2--LINC00032	4	4	BNC2	1198	chr9:16870644:-	LINC00032	32735	chr9:27280919:-	INCL_NON_REF_SPLICE	YES	2	2	0.8	0.8	0.052	0.052	BNC2->basonuclin_2,chr9:16409501-16870841:-,LINC00032->chr9:27245682-27282791:-,long_intergenic_non-protein_coding_RNA_32	IGR1_SKIN	0.8	0.8	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	E2F1--CBFA2T2	4	2	E2F1	1401	chr20:32273810:-	CBFA2T2	15797	chr20:32194762:+	ONLY_REF_SPLICE	YES	4	12	0.6	0.33	0.052	0.026	LOCAL_INVERSION:-:+:[25647],E2F1->E2F_transcription_factor_1,Oncogene{Bushman},chr20:32263489-32274210:-,CBFA2T2->CBFA2/RUNX1_translocation_partner_2,chr20:32077881-32237842:+	IGR1_SKIN	0.33	0.6	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	PMEL--DGKA	4	0	PMEL	4690	chr12:56359720:-	DGKA	22112	chr12:56330207:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.052	0	LOCAL_INVERSION:-:+:[78],PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,DGKA->chr12:56321103-56347811:+,diacylglycerol_kinase_alpha	IGR1_SKIN	1	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	EPB41L1--MIR663A	3	2	EPB41L1	24191	chr20:34785963:+	MIR663A	49158	chr20:26172399:-	ONLY_REF_SPLICE	YES	32	2	0.14	0.71	0.039	0.026	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,MIR663A->chr20:26167556-26232162:-,microRNA_663a	IGR1_SKIN	0.14	0.71	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	RALGAPA2--E2F1	3	1	RALGAPA2	40578	chr20:20475761:-	E2F1	54868	chr20:32268222:-	ONLY_REF_SPLICE	YES	8	5	0.33	0.44	0.039	0.013	RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-,E2F1->E2F_transcription_factor_1,Oncogene{Bushman},chr20:32263489-32274210:-	IGR1_SKIN	0.33	0.44	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	RP11-158I13.2--LINC00570	3	1	RP11-158I13.2	7883	chr2:27830906:+	LINC00570	23964	chr2:11542151:+	ONLY_REF_SPLICE	YES	24	0	0.14	1	0.039	0.013	RP11-158I13.2->chr2:27805913-27858041:+,LINC00570->chr2:11534107-11543203:+,long_intergenic_non-protein_coding_RNA_570	IGR1_SKIN	0.14	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	PMEL--DGKA	3	0	PMEL	4690	chr12:56359720:-	DGKA	22706	chr12:56330801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	LOCAL_INVERSION:-:+:[78],PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,DGKA->chr12:56321103-56347811:+,diacylglycerol_kinase_alpha	IGR1_SKIN	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	RPS12--RNF149	3	0	RPS12	2887	chr6:133137702:+	RNF149	18657	chr2:101888206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	IGR1_SKIN	1	1	0.039	TRUE	0	0	0	3	0	TRUE	ACH-000882
IGR1_SKIN	WIPI1--PRKAR1A	3	0	WIPI1	14701	chr17:66422216:-	PRKAR1A	22789	chr17:66511535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Gastroesophageal_Junction=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[54267],WIPI1->WD_repeat_domain,_phosphoinositide_interacting_1,chr17:66417089-66453654:-,PRKAR1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:66507921-66547460:+,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_alpha	IGR1_SKIN	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	EPB41L1--MIR663A	2	3	EPB41L1	24191	chr20:34785963:+	MIR663A	49025	chr20:26172532:-	ONLY_REF_SPLICE	YES	32	0	0.14	1	0.026	0.039	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,MIR663A->chr20:26167556-26232162:-,microRNA_663a	IGR1_SKIN	0.14	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	CDK10--TUBB3	2	0	CDK10	3890	chr16:89753205:+	TUBB3	23419	chr16:89998979:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10,TUBB3->chr16:89985573-90002500:+,chr16:89987800-90005169:+,tubulin_beta_3_class_III	IGR1_SKIN	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	CHCHD3--NDUFB2	2	0	CHCHD3	5725	chr7:132709306:-	NDUFB2	27779	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	IGR1_SKIN	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	BNC2--LINC00032	1	1	BNC2	1198	chr9:16870644:-	LINC00032	39360	chr9:27272086:-	ONLY_REF_SPLICE	YES	2	2	0.5	0.5	0.013	0.013	BNC2->basonuclin_2,chr9:16409501-16870841:-,LINC00032->chr9:27245682-27282791:-,long_intergenic_non-protein_coding_RNA_32	IGR1_SKIN	0.5	0.5	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	BNC2--LINC00032	1	1	BNC2	1198	chr9:16870644:-	LINC00032	38163	chr9:27274284:-	ONLY_REF_SPLICE	YES	2	2	0.5	0.5	0.013	0.013	BNC2->basonuclin_2,chr9:16409501-16870841:-,LINC00032->chr9:27245682-27282791:-,long_intergenic_non-protein_coding_RNA_32	IGR1_SKIN	0.5	0.5	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	EZH1--MYO18A	1	1	EZH1	17753	chr17:40858025:-	MYO18A	28767	chr17:27494039:-	ONLY_REF_SPLICE	YES	15	1	0.12	0.67	0.013	0.013	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	IGR1_SKIN	0.12	0.67	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	RP11-158I13.2--LINC00570	1	1	RP11-158I13.2	7883	chr2:27830906:+	LINC00570	22878	chr2:11540498:+	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.013	0.013	RP11-158I13.2->chr2:27805913-27858041:+,LINC00570->chr2:11534107-11543203:+,long_intergenic_non-protein_coding_RNA_570	IGR1_SKIN	0.08	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000882
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	332	163	NPM1	4640	chr5:170818803:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	1071	0	0.32	1	5.2387	2.572	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	7.8107	TRUE	0	0	0	6	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARPC1B--KPNA7	46	19	ARPC1B	12188	chr7:98990499:+	KPNA7	20031	chr7:98792961:-	ONLY_REF_SPLICE	YES	738	0	0.08	1	0.7258	0.2998	ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	1.0256	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LIX1L--MSRB2	40	23	LIX1L	2530	chr1:145487467:+	MSRB2	13170	chr10:23393073:+	ONLY_REF_SPLICE	YES	31	260	0.67	0.2	0.6312	0.3629	LIX1L->chr1:145477085-145501669:+,limb_and_CNS_expressed_1_like,MSRB2->chr10:23384435-23410942:+,methionine_sulfoxide_reductase_B2	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.67	0.9941	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MYL6	43	1	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	1145	45	0.04	0.49	0.6785	0.0158	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.49	0.6943	TRUE	0	0	0	8	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIP4K2A--NEBL	33	16	PIP4K2A	1373	chr10:23003112:-	NEBL	51173	chr10:21117563:-	ONLY_REF_SPLICE	YES	21	0	0.7	1	0.5207	0.2525	PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,NEBL->chr10:21068902-21463116:-,nebulette	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	1	0.7732	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-284F21.7--FLG2	20	36	RP11-284F21.7	2243	chr1:156616814:-	FLG2	6810	chr1:152331382:-	INCL_NON_REF_SPLICE	YES	61	0	0.48	1	0.3156	0.5681	RP11-284F21.7->chr1:156616299-156631216:-,FLG2->chr1:152321211-152332482:-,filaggrin_family_member_2	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.8837	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LIX1L--MSRB2	26	8	LIX1L	1366	chr1:145477450:+	MSRB2	13170	chr10:23393073:+	ONLY_REF_SPLICE	YES	16	260	0.68	0.12	0.4103	0.1262	LIX1L->chr1:145477085-145501669:+,limb_and_CNS_expressed_1_like,MSRB2->chr10:23384435-23410942:+,methionine_sulfoxide_reductase_B2	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.68	0.5365	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	1	86	NPM1	4265	chr5:170818428:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	NO	1257	0	0.06	1	0.0158	1.357	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	1.3728	TRUE	0	0	0	6	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLG-AS1--BCAN	21	0	FLG-AS1	19684	chr1:152338798:+	BCAN	25911	chr1:156616814:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3314	0	FLG-AS1->FLG_antisense_RNA_1,chr1:152140601-152339163:+,BCAN->brevican,chr1:156611182-156629324:+	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3314	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LIX1L--MSRB2	12	8	LIX1L	2530	chr1:145487467:+	MSRB2	14271	chr10:23399171:+	ONLY_REF_SPLICE	YES	31	317	0.39	0.06	0.1894	0.1262	LIX1L->chr1:145477085-145501669:+,limb_and_CNS_expressed_1_like,MSRB2->chr10:23384435-23410942:+,methionine_sulfoxide_reductase_B2	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.39	0.3156	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLG-AS1--BCAN	6	1	FLG-AS1	19684	chr1:152338798:+	BCAN	25782	chr1:156616685:+	INCL_NON_REF_SPLICE	YES	15	17	0.32	0.29	0.0947	0.0158	FLG-AS1->FLG_antisense_RNA_1,chr1:152140601-152339163:+,BCAN->brevican,chr1:156611182-156629324:+	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.32	0.1105	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIP4K2A--NEBL	1	16	PIP4K2A	6137	chr10:22935148:-	NEBL	51173	chr10:21117563:-	ONLY_REF_SPLICE	YES	23	0	0.42	1	0.0158	0.2525	PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,NEBL->chr10:21068902-21463116:-,nebulette	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.2683	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIP4K2A--NEBL	1	6	PIP4K2A	1373	chr10:23003112:-	NEBL	52278	chr10:21115468:-	ONLY_REF_SPLICE	YES	21	3	0.25	0.7	0.0158	0.0947	PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,NEBL->chr10:21068902-21463116:-,nebulette	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.7	0.1105	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIP4K2A--NEBL	1	1	PIP4K2A	1373	chr10:23003112:-	NEBL	59676	chr10:21101869:-	ONLY_REF_SPLICE	YES	21	5	0.09	0.29	0.0158	0.0158	PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,NEBL->chr10:21068902-21463116:-,nebulette	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.29	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000053
MFE280_ENDOMETRIUM	RGL3--ECSIT	145	62	RGL3	3957	chr19:11526613:-	ECSIT	27762	chr19:11617243:-	ONLY_REF_SPLICE	YES	48	25	0.81	0.89	1.9467	0.8324	LOCAL_REARRANGEMENT:-:[86713],RGL3->chr19:11495017-11530018:-,ral_guanine_nucleotide_dissociation_stimulator_like_3,ECSIT->ECSIT_signalling_integrator,chr19:11616731-11639989:-	MFE280_ENDOMETRIUM	0.81	0.89	2.7791	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	KDM2A--SYT12	143	36	KDM2A	2906	chr11:66888829:+	SYT12	37848	chr11:66789340:+	ONLY_REF_SPLICE	YES	12	1	0.94	0.99	1.9198	0.4833	YOSHIHARA_TCGA_num_samples[BRCA:1|GBM:1],LOCAL_REARRANGEMENT:+:[68406],KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A,SYT12->chr11:66774249-66818334:+,synaptotagmin_12	MFE280_ENDOMETRIUM	0.94	0.99	2.4031	TRUE	0	1	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SUPT6H--SLC13A2	109	61	SUPT6H	3678	chr17:26999876:+	SLC13A2	37788	chr17:26818748:+	ONLY_REF_SPLICE	YES	215	2	0.44	0.99	1.4634	0.8189	SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	MFE280_ENDOMETRIUM	0.44	0.99	2.2823	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	CDC42--CELA3A	113	41	CDC42	4088	chr1:22405076:+	CELA3A	14952	chr1:22329496:+	ONLY_REF_SPLICE	YES	503	0	0.23	1	1.5171	0.5504	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MFE280_ENDOMETRIUM	0.23	1	2.0675	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ELMSAN1--FGD5	100	34	ELMSAN1	4154	chr14:74226466:-	FGD5	43376	chr3:14963425:+	ONLY_REF_SPLICE	YES	2	2	0.99	0.99	1.3425	0.4565	ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,FGD5->FYVE,_RhoGEF_and_PH_domain_containing_5,chr3:14860469-14975895:+	MFE280_ENDOMETRIUM	0.99	0.99	1.799	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ELMSAN1--FGD5	98	17	ELMSAN1	2618	chr14:74253805:-	FGD5	43376	chr3:14963425:+	ONLY_REF_SPLICE	YES	1	2	0.99	0.98	1.3157	0.2282	ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,FGD5->FYVE,_RhoGEF_and_PH_domain_containing_5,chr3:14860469-14975895:+	MFE280_ENDOMETRIUM	0.98	0.99	1.5439	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RP11-191L9.4--ATXN10	67	35	RP11-191L9.4	2387	chr22:48031102:+	ATXN10	28069	chr22:46202839:+	ONLY_REF_SPLICE	YES	1	173	0.99	0.37	0.8995	0.4699	RP11-191L9.4->chr22:48027423-48251349:+,ATXN10->ataxin_10,chr22:46067678-46241187:+	MFE280_ENDOMETRIUM	0.37	0.99	1.3694	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MGAT4A--AC109826.1	70	22	MGAT4A	5043	chr2:99294767:-	AC109826.1	28686	chr2:99385509:-	ONLY_REF_SPLICE	YES	61	1	0.6	0.99	0.9398	0.2954	LOCAL_REARRANGEMENT:-:[30812],MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A,AC109826.1->chr2:99378401-99388543:-	MFE280_ENDOMETRIUM	0.6	0.99	1.2352	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	CHMP6--RPTOR	62	37	CHMP6	5952	chr17:78972220:+	RPTOR	49307	chr17:78931424:+	ONLY_REF_SPLICE	YES	28	23	0.78	0.81	0.8324	0.4967	LOCAL_REARRANGEMENT:+:[25227],CHMP6->charged_multivesicular_body_protein_6,chr17:78965398-78983317:+,RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1	MFE280_ENDOMETRIUM	0.78	0.81	1.3291	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	COPB2--COL26A1	60	17	COPB2	21266	chr3:139077840:-	COL26A1	36180	chr7:101192452:+	ONLY_REF_SPLICE	YES	334	22	0.19	0.78	0.8055	0.2282	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,COL26A1->chr7:101006101-101202304:+,collagen_type_XXVI_alpha_1	MFE280_ENDOMETRIUM	0.19	0.78	1.0337	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	FAM13B--BRD8	58	4	FAM13B	11409	chr5:137342679:-	BRD8	37776	chr5:137506098:-	ONLY_REF_SPLICE	YES	35	174	0.64	0.26	0.7787	0.0537	LOCAL_REARRANGEMENT:-:[87805],FAM13B->chr5:137273649-137387650:-,family_with_sequence_similarity_13_member_B,BRD8->bromodomain_containing_8,chr5:137475455-137514675:-	MFE280_ENDOMETRIUM	0.26	0.64	0.8324	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	HIF1A--RP11-47I22.3	48	30	HIF1A	15201	chr14:62207906:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	221	0	0.26	1	0.6444	0.4028	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	MFE280_ENDOMETRIUM	0.26	1	1.0472	TRUE	0	1	0	1	1	TRUE	ACH-000192
MFE280_ENDOMETRIUM	GON4L--DDX19B	48	17	GON4L	10048	chr1:155790397:-	DDX19B	46887	chr16:70346512:+	ONLY_REF_SPLICE	YES	23	70	0.74	0.48	0.6444	0.2282	GON4L->chr1:155719508-155829191:-,gon-4_like,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	MFE280_ENDOMETRIUM	0.48	0.74	0.8726	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	NUFIP2--MIR4523	47	10	NUFIP2	1336	chr17:27620801:-	MIR4523	19024	chr17:27697323:-	ONLY_REF_SPLICE	YES	128	0	0.31	1	0.631	0.1343	LOCAL_INVERSION:-:-,chr17:[75599],NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2,MIR4523->chr17:27696735-27717795:-,chr17:27717680-27717748:+,microRNA_4523	MFE280_ENDOMETRIUM	0.31	1	0.7653	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	NIPBL--WDR70	43	17	NIPBL	24322	chr5:37010327:+	WDR70	66342	chr5:37697757:+	ONLY_REF_SPLICE	YES	22	17	0.73	0.78	0.5773	0.2282	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+	MFE280_ENDOMETRIUM	0.73	0.78	0.8055	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	TAF9--RP11-241G9.3	45	9	TAF9	7559	chr5:68651476:-	RP11-241G9.3	15053	chr5:68773502:-	ONLY_REF_SPLICE	YES	234	0	0.19	1	0.6041	0.1208	TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-,RP11-241G9.3->chr5:68773299-68798293:-	MFE280_ENDOMETRIUM	0.19	1	0.7249	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	IMMT--PLGLB1	37	32	IMMT	2923	chr2:86408422:-	PLGLB1	29183	chr2:87230280:-	ONLY_REF_SPLICE	YES	94	0	0.42	1	0.4967	0.4296	IMMT->chr2:86371055-86422893:-,inner_membrane_mitochondrial_protein,PLGLB1->chr2:87229682-87248975:-,plasminogen-like_B1	MFE280_ENDOMETRIUM	0.42	1	0.9263	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SUPT6H--SLC13A2	26	68	SUPT6H	3701	chr17:26999899:+	SLC13A2	37476	chr17:26818436:+	INCL_NON_REF_SPLICE	YES	218	0	0.3	1	0.3491	0.9129	SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	MFE280_ENDOMETRIUM	0.3	1	1.262	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SMARCC1--CELSR3	35	17	SMARCC1	30620	chr3:47651556:-	CELSR3	43862	chr3:48694781:-	ONLY_REF_SPLICE	YES	96	21	0.35	0.71	0.4699	0.2282	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,CELSR3->cadherin_EGF_LAG_seven-pass_G-type_receptor_3,chr3:48673902-48700348:-	MFE280_ENDOMETRIUM	0.35	0.71	0.6981	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BRD8--ETF1	39	0	BRD8	6330	chr5:137506034:-	ETF1	38797	chr5:137846318:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5236	0	BRD8->bromodomain_containing_8,chr5:137475455-137514675:-,ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1	MFE280_ENDOMETRIUM	1	1	0.5236	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	NUMB--HEATR4	34	8	NUMB	7519	chr14:73876645:-	HEATR4	53170	chr14:73959828:-	ONLY_REF_SPLICE	YES	39	0	0.52	1	0.4565	0.1074	LOCAL_REARRANGEMENT:-:[14841],NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-,HEATR4->HEAT_repeat_containing_4,chr14:73945189-74025651:-	MFE280_ENDOMETRIUM	0.52	1	0.5639	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	CALM3--MYL6	25	0	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3356	0	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	MFE280_ENDOMETRIUM	1	1	0.3356	TRUE	0	0	0	8	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	IMMT--PLGLB1	13	42	IMMT	2923	chr2:86408422:-	PLGLB1	29132	chr2:87230331:-	INCL_NON_REF_SPLICE	YES	94	0	0.37	1	0.1745	0.5639	IMMT->chr2:86371055-86422893:-,inner_membrane_mitochondrial_protein,PLGLB1->chr2:87229682-87248975:-,plasminogen-like_B1	MFE280_ENDOMETRIUM	0.37	1	0.7384	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RGL3--ECSIT	8	60	RGL3	3947	chr19:11526623:-	ECSIT	27762	chr19:11617243:-	ONLY_REF_SPLICE	YES	47	25	0.59	0.73	0.1074	0.8055	LOCAL_REARRANGEMENT:-:[86713],RGL3->chr19:11495017-11530018:-,ral_guanine_nucleotide_dissociation_stimulator_like_3,ECSIT->ECSIT_signalling_integrator,chr19:11616731-11639989:-	MFE280_ENDOMETRIUM	0.59	0.73	0.9129	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ABI2--CYP20A1	19	14	ABI2	5910	chr2:204231767:+	CYP20A1	45807	chr2:204110569:+	ONLY_REF_SPLICE	YES	70	36	0.32	0.48	0.2551	0.188	LOCAL_REARRANGEMENT:+:[29933],ABI2->abl-interactor_2,chr2:204192942-204312446:+,CYP20A1->chr2:204103663-204163009:+,cytochrome_P450_family_20_subfamily_A_member_1	MFE280_ENDOMETRIUM	0.32	0.48	0.4431	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	REV3L--GTF3C6	21	5	REV3L	20973	chr6:111693799:-	GTF3C6	52000	chr6:111283595:+	ONLY_REF_SPLICE	YES	47	242	0.36	0.1	0.2819	0.0671	REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,GTF3C6->chr6:111279763-111289093:+,general_transcription_factor_IIIC_subunit_6	MFE280_ENDOMETRIUM	0.1	0.36	0.349	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RGL3--ECSIT	5	67	RGL3	5150	chr19:11521929:-	ECSIT	27762	chr19:11617243:-	ONLY_REF_SPLICE	YES	54	25	0.57	0.74	0.0671	0.8995	LOCAL_REARRANGEMENT:-:[86713],RGL3->chr19:11495017-11530018:-,ral_guanine_nucleotide_dissociation_stimulator_like_3,ECSIT->ECSIT_signalling_integrator,chr19:11616731-11639989:-	MFE280_ENDOMETRIUM	0.57	0.74	0.9666	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	IMMT--PLGLB1	10	33	IMMT	2923	chr2:86408422:-	PLGLB1	29172	chr2:87230291:-	INCL_NON_REF_SPLICE	YES	94	0	0.31	1	0.1343	0.443	IMMT->chr2:86371055-86422893:-,inner_membrane_mitochondrial_protein,PLGLB1->chr2:87229682-87248975:-,plasminogen-like_B1	MFE280_ENDOMETRIUM	0.31	1	0.5773	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	13	21	PDDC1	6959	chr11:770993:-	CHID1	30552	chr11:870499:-	ONLY_REF_SPLICE	YES	43	85	0.44	0.29	0.1745	0.2819	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	0.29	0.44	0.4564	TRUE	0	1	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RGL3--ECSIT	13	18	RGL3	3282	chr19:11527288:-	ECSIT	27762	chr19:11617243:-	ONLY_REF_SPLICE	YES	68	25	0.31	0.55	0.1745	0.2417	LOCAL_REARRANGEMENT:-:[86713],RGL3->chr19:11495017-11530018:-,ral_guanine_nucleotide_dissociation_stimulator_like_3,ECSIT->ECSIT_signalling_integrator,chr19:11616731-11639989:-	MFE280_ENDOMETRIUM	0.31	0.55	0.4162	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	12	16	PDDC1	6619	chr11:771333:-	CHID1	30552	chr11:870499:-	ONLY_REF_SPLICE	YES	51	85	0.35	0.25	0.1611	0.2148	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	0.25	0.35	0.3759	TRUE	0	1	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BRD1--DENND6B	14	4	BRD1	15303	chr22:50170682:-	DENND6B	23396	chr22:50757432:-	ONLY_REF_SPLICE	YES	26	9	0.41	0.67	0.188	0.0537	BRD1->bromodomain_containing_1,chr22:50166931-50221160:-,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	MFE280_ENDOMETRIUM	0.41	0.67	0.2417	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BLMH--MYO15B	12	11	BLMH	11462	chr17:28593903:-	MYO15B	30619	chr17:73601945:+	ONLY_REF_SPLICE	YES	142	12	0.14	0.66	0.1611	0.1477	BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-,MYO15B->chr17:73584139-73622929:+,myosin_XVB	MFE280_ENDOMETRIUM	0.14	0.66	0.3088	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	HEY2--RP1-293L8.2	12	8	HEY2	4715	chr6:126075692:+	RP1-293L8.2	14071	chr6:126038604:+	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.1611	0.1074	LOCAL_REARRANGEMENT:+:[27446],HEY2->chr6:126068810-126082415:+,hes_related_family_bHLH_transcription_factor_with_YRPW_motif_2,RP1-293L8.2->chr6:125995499-126041364:+	MFE280_ENDOMETRIUM	0.83	1	0.2685	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RP11-773D16.1--RAPGEF4	13	3	RP11-773D16.1	4616	chr10:81568515:-	RAPGEF4	13233	chr2:173659753:+	ONLY_REF_SPLICE	YES	16	1	0.5	0.94	0.1745	0.0403	RP11-773D16.1->chr10:81563813-81586350:-,RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+	MFE280_ENDOMETRIUM	0.5	0.94	0.2148	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SH3BP5-AS1--ZBTB3	13	2	SH3BP5-AS1	4033	chr3:15298723:+	ZBTB3	16077	chr11:62515907:-	INCL_NON_REF_SPLICE	YES	41	0	0.27	1	0.1745	0.0269	SH3BP5-AS1->SH3BP5_antisense_RNA_1,chr3:15295691-15306000:+,ZBTB3->chr11:62515791-62521660:-,zinc_finger_and_BTB_domain_containing_3	MFE280_ENDOMETRIUM	0.27	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ITGBL1--RP11-78F17.1	12	5	ITGBL1	9242	chr13:102250649:+	RP11-78F17.1	27861	chr18:1159180:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1611	0.0671	ITGBL1->chr13:102104966-102375456:+,integrin_subunit_beta_like_1,RP11-78F17.1->chr18:976590-1174824:+	MFE280_ENDOMETRIUM	0.89	1	0.2282	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MPP7--PARD3	11	5	MPP7	3349	chr10:28591790:-	PARD3	61298	chr10:34420511:-	ONLY_REF_SPLICE	YES	1	19	0.94	0.46	0.1477	0.0671	MPP7->chr10:28339922-28623415:-,membrane_palmitoylated_protein_7,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	MFE280_ENDOMETRIUM	0.46	0.94	0.2148	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	REV3L--GTF3C6	11	5	REV3L	22376	chr6:111688829:-	GTF3C6	52000	chr6:111283595:+	INCL_NON_REF_SPLICE	YES	79	242	0.17	0.06	0.1477	0.0671	REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,GTF3C6->chr6:111279763-111289093:+,general_transcription_factor_IIIC_subunit_6	MFE280_ENDOMETRIUM	0.06	0.17	0.2148	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	TMEM163--THSD7B	12	0	TMEM163	2387	chr2:135470770:-	THSD7B	33646	chr2:138030103:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1611	0	TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163,THSD7B->chr2:137523115-138435287:+,thrombospondin_type_1_domain_containing_7B	MFE280_ENDOMETRIUM	1	1	0.1611	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RP11-307C19.2--HMG20A	11	1	RP11-307C19.2	1207	chr15:77861518:+	HMG20A	14752	chr15:77764125:+	ONLY_REF_SPLICE	YES	0	26	1	0.32	0.1477	0.0134	LOCAL_REARRANGEMENT:+:[83363],RP11-307C19.2->chr15:77861312-77901023:+,HMG20A->chr15:77712754-77777949:+,high_mobility_group_20A	MFE280_ENDOMETRIUM	0.32	1	0.1611	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	5	24	PDDC1	7638	chr11:770314:-	CHID1	30552	chr11:870499:-	ONLY_REF_SPLICE	YES	35	85	0.45	0.25	0.0671	0.3222	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	0.25	0.45	0.3893	TRUE	0	1	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PIK3R3--MKNK1	10	4	PIK3R3	4696	chr1:46546314:-	MKNK1	27323	chr1:47050475:-	ONLY_REF_SPLICE	YES	58	55	0.19	0.2	0.1343	0.0537	PIK3R3->chr1:46505812-46642160:-,phosphoinositide-3-kinase_regulatory_subunit_3,MKNK1->MAP_kinase_interacting_serine/threonine_kinase_1,chr1:47023090-47082515:-	MFE280_ENDOMETRIUM	0.19	0.2	0.188	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	YTHDC2--RP11-254I22.3	9	6	YTHDC2	25017	chr5:112917406:+	RP11-254I22.3	36141	chr5:95550671:-	INCL_NON_REF_SPLICE	YES	15	0	0.5	1	0.1208	0.0806	YTHDC2->YTH_domain_containing_2,chr5:112849380-112930982:+,RP11-254I22.3->chr5:95549050-95550779:-	MFE280_ENDOMETRIUM	0.5	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BCAS4--THAP8	10	1	BCAS4	3454	chr20:49446917:+	THAP8	14358	chr19:36530620:-	ONLY_REF_SPLICE	YES	34	15	0.24	0.42	0.1343	0.0134	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,THAP8->THAP_domain_containing_8,chr19:36525887-36545664:-	MFE280_ENDOMETRIUM	0.24	0.42	0.1477	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	5	21	PDDC1	7273	chr11:770679:-	CHID1	30552	chr11:870499:-	ONLY_REF_SPLICE	YES	35	85	0.43	0.23	0.0671	0.2819	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	0.23	0.43	0.349	TRUE	0	1	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SMG1--CTA-363E6.2	9	5	SMG1	1505	chr16:18937272:-	CTA-363E6.2	72086	chr16:19407571:-	ONLY_REF_SPLICE	YES	13	0	0.52	1	0.1208	0.0671	SMG1->SMG1_phosphatidylinositol_3-kinase-related_kinase,chr16:18816175-18937776:-,CTA-363E6.2->chr16:19354969-19413015:-	MFE280_ENDOMETRIUM	0.52	1	0.1879	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SLC22A17--MYH7	8	8	SLC22A17	4485	chr14:23818481:-	MYH7	11551	chr14:23903458:-	ONLY_REF_SPLICE	YES	28	0	0.36	1	0.1074	0.1074	LOCAL_REARRANGEMENT:-:[59826],SLC22A17->chr14:23815515-23822121:-,solute_carrier_family_22_member_17,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	MFE280_ENDOMETRIUM	0.36	1	0.2148	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ADAM32--ADAM9	9	0	ADAM32	1844	chr8:38965352:+	ADAM9	61921	chr8:38959382:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1208	0	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[1846],ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+,ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+	MFE280_ENDOMETRIUM	1	1	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	KMT2B--DMRT1	9	0	KMT2B	4699	chr19:36212706:+	DMRT1	31054	chr9:967985:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1208	0	KMT2B->chr19:36208921-36229779:+,lysine_methyltransferase_2B,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	MFE280_ENDOMETRIUM	1	1	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	CHST3--AGPAT3	8	3	CHST3	1330	chr10:73724452:+	AGPAT3	35588	chr21:45397927:+	ONLY_REF_SPLICE	YES	3	47	0.79	0.19	0.1074	0.0403	CHST3->carbohydrate_(chondroitin_6)_sulfotransferase_3,chr10:73724123-73773322:+,AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+	MFE280_ENDOMETRIUM	0.19	0.79	0.1477	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SLC22A17--MYH7	6	10	SLC22A17	5251	chr14:23817715:-	MYH7	11551	chr14:23903458:-	ONLY_REF_SPLICE	YES	19	0	0.46	1	0.0806	0.1343	LOCAL_REARRANGEMENT:-:[59826],SLC22A17->chr14:23815515-23822121:-,solute_carrier_family_22_member_17,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	MFE280_ENDOMETRIUM	0.46	1	0.2149	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ELMSAN1--FGD5	7	5	ELMSAN1	2618	chr14:74253805:-	FGD5	49540	chr3:14974084:+	ONLY_REF_SPLICE	YES	1	57	0.92	0.17	0.094	0.0671	ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,FGD5->FYVE,_RhoGEF_and_PH_domain_containing_5,chr3:14860469-14975895:+	MFE280_ENDOMETRIUM	0.17	0.92	0.1611	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ELMSAN1--FGD5	6	9	ELMSAN1	2618	chr14:74253805:-	FGD5	43869	chr3:14963918:+	ONLY_REF_SPLICE	YES	1	4	0.94	0.79	0.0806	0.1208	ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,FGD5->FYVE,_RhoGEF_and_PH_domain_containing_5,chr3:14860469-14975895:+	MFE280_ENDOMETRIUM	0.79	0.94	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PSMD4--PIP5K1A	8	0	PSMD4	1106	chr1:151227284:+	PIP5K1A	16262	chr1:151196724:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1074	0	LOCAL_REARRANGEMENT:+:[5167],PSMD4->chr1:151227179-151239955:+,proteasome_26S_subunit,_non-ATPase_4,PIP5K1A->chr1:151170425-151222012:+,phosphatidylinositol-4-phosphate_5-kinase_type_1_alpha	MFE280_ENDOMETRIUM	1	1	0.1074	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	DNAJC28--GART	7	2	DNAJC28	3281	chr21:34861106:-	GART	18274	chr21:34896569:-	INCL_NON_REF_SPLICE	YES	5	122	0.64	0.07	0.094	0.0269	LOCAL_REARRANGEMENT:-:[12211],DNAJC28->DnaJ_heat_shock_protein_family_(Hsp40)_member_C28,chr21:34860497-34864027:-,GART->chr21:34876238-34915797:-,phosphoribosylglycinamide_formyltransferase,_phosphoribosylglycinamide_synthetase,_phosphoribosylaminoimidazole_synthetase	MFE280_ENDOMETRIUM	0.07	0.64	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RP11-191L9.4--ATXN10	4	14	RP11-191L9.4	1213	chr22:48027635:+	ATXN10	28069	chr22:46202839:+	ONLY_REF_SPLICE	YES	10	173	0.64	0.09	0.0537	0.188	RP11-191L9.4->chr22:48027423-48251349:+,ATXN10->ataxin_10,chr22:46067678-46241187:+	MFE280_ENDOMETRIUM	0.09	0.64	0.2417	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SLX4--ADCY9	6	6	SLX4	4401	chr16:3656475:-	ADCY9	30444	chr16:4043511:-	ONLY_REF_SPLICE	YES	10	12	0.55	0.5	0.0806	0.0806	SLX4->SLX4_structure-specific_endonuclease_subunit,chr16:3631182-3661599:-,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-	MFE280_ENDOMETRIUM	0.5	0.55	0.1612	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BLMH--MYO15B	4	13	BLMH	11462	chr17:28593903:-	MYO15B	30259	chr17:73601585:+	ONLY_REF_SPLICE	YES	142	8	0.11	0.68	0.0537	0.1745	BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-,MYO15B->chr17:73584139-73622929:+,myosin_XVB	MFE280_ENDOMETRIUM	0.11	0.68	0.2282	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ZNF30--KAT7	7	1	ZNF30	4717	chr19:35424627:+	KAT7	11364	chr17:47865986:+	INCL_NON_REF_SPLICE	YES	26	0	0.24	1	0.094	0.0134	ZNF30->chr19:35417807-35436074:+,zinc_finger_protein_30,KAT7->chr17:47865917-47906458:+,lysine_acetyltransferase_7	MFE280_ENDOMETRIUM	0.24	1	0.1074	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	3	16	PDDC1	6619	chr11:771333:-	CHID1	29111	chr11:874910:-	ONLY_REF_SPLICE	YES	51	94	0.27	0.17	0.0403	0.2148	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	0.17	0.27	0.2551	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PIK3R3--MKNK1	6	4	PIK3R3	4696	chr1:46546314:-	MKNK1	28623	chr1:47049001:-	ONLY_REF_SPLICE	YES	58	59	0.15	0.14	0.0806	0.0537	PIK3R3->chr1:46505812-46642160:-,phosphoinositide-3-kinase_regulatory_subunit_3,MKNK1->MAP_kinase_interacting_serine/threonine_kinase_1,chr1:47023090-47082515:-	MFE280_ENDOMETRIUM	0.14	0.15	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	TMEM150C--SEC31A	7	0	TMEM150C	1452	chr4:83483059:-	SEC31A	30224	chr4:83785751:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.094	0	TMEM150C->chr4:83404323-83483510:-,transmembrane_protein_150C,SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-	MFE280_ENDOMETRIUM	1	1	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RAD50--PDLIM4	6	3	RAD50	3519	chr5:131895059:+	PDLIM4	34820	chr5:131598302:+	ONLY_REF_SPLICE	YES	37	21	0.2	0.3	0.0806	0.0403	RAD50->ArcherDX_panel,FoundationOne_panel,RAD50_double_strand_break_repair_protein,chr5:131891711-131980313:+,PDLIM4->PDZ_and_LIM_domain_4,chr5:131593364-131609147:+	MFE280_ENDOMETRIUM	0.2	0.3	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RGL3--ECSIT	4	11	RGL3	3060	chr19:11527510:-	ECSIT	27762	chr19:11617243:-	ONLY_REF_SPLICE	YES	89	25	0.14	0.38	0.0537	0.1477	LOCAL_REARRANGEMENT:-:[86713],RGL3->chr19:11495017-11530018:-,ral_guanine_nucleotide_dissociation_stimulator_like_3,ECSIT->ECSIT_signalling_integrator,chr19:11616731-11639989:-	MFE280_ENDOMETRIUM	0.14	0.38	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ATAD2B--ITSN2	6	2	ATAD2B	15171	chr2:24080285:-	ITSN2	85056	chr2:24443935:-	ONLY_REF_SPLICE	YES	6	5	0.57	0.62	0.0806	0.0269	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hypothalamus=1},ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,ITSN2->chr2:24425733-24583583:-,intersectin_2	MFE280_ENDOMETRIUM	0.57	0.62	0.1075	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	1	21	PDDC1	6959	chr11:770993:-	CHID1	29111	chr11:874910:-	ONLY_REF_SPLICE	YES	43	94	0.34	0.19	0.0134	0.2819	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	0.19	0.34	0.2953	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ABI2--CYP20A1	4	6	ABI2	5910	chr2:204231767:+	CYP20A1	47883	chr2:204116690:+	ONLY_REF_SPLICE	YES	70	42	0.12	0.19	0.0537	0.0806	LOCAL_REARRANGEMENT:+:[29933],ABI2->abl-interactor_2,chr2:204192942-204312446:+,CYP20A1->chr2:204103663-204163009:+,cytochrome_P450_family_20_subfamily_A_member_1	MFE280_ENDOMETRIUM	0.12	0.19	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	HIF1A--RP11-47I22.3	1	18	HIF1A	15201	chr14:62207906:+	RP11-47I22.3	26059	chr14:62120341:+	ONLY_REF_SPLICE	NO	221	0	0.08	1	0.0134	0.2417	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	MFE280_ENDOMETRIUM	0.08	1	0.2551	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	NME5--CDC23	5	2	NME5	6258	chr5:137454507:-	CDC23	16860	chr5:137534471:-	ONLY_REF_SPLICE	YES	27	71	0.21	0.09	0.0671	0.0269	LOCAL_REARRANGEMENT:-:[48207],NME5->NME/NM23_family_member_5,chr5:137450866-137475132:-,CDC23->cell_division_cycle_23,chr5:137523339-137549032:-	MFE280_ENDOMETRIUM	0.09	0.21	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	GON4L--DDX19B	2	13	GON4L	10048	chr1:155790397:-	DDX19B	48033	chr16:70348805:+	ONLY_REF_SPLICE	YES	23	53	0.39	0.22	0.0269	0.1745	GON4L->chr1:155719508-155829191:-,gon-4_like,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	MFE280_ENDOMETRIUM	0.22	0.39	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ARSB--FHL2	4	3	ARSB	5737	chr5:78251118:-	FHL2	26309	chr2:106002997:-	ONLY_REF_SPLICE	YES	14	27	0.33	0.21	0.0537	0.0403	ARSB->arylsulfatase_B,chr5:78073032-78281910:-,FHL2->Oncogene{Bushman},chr2:105974169-106054970:-,four_and_a_half_LIM_domains_2	MFE280_ENDOMETRIUM	0.21	0.33	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BCAS4--THAP8	4	3	BCAS4	3454	chr20:49446917:+	THAP8	13940	chr19:36531038:-	ONLY_REF_SPLICE	YES	34	17	0.17	0.29	0.0537	0.0403	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,THAP8->THAP_domain_containing_8,chr19:36525887-36545664:-	MFE280_ENDOMETRIUM	0.17	0.29	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	GALNT16--EXD2	4	2	GALNT16	11075	chr14:69800317:+	EXD2	28911	chr14:69676141:+	ONLY_REF_SPLICE	YES	17	15	0.26	0.29	0.0537	0.0269	LOCAL_REARRANGEMENT:+:[16919],GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16,EXD2->chr14:69658228-69709075:+,exonuclease_3'-5'_domain_containing_2	MFE280_ENDOMETRIUM	0.26	0.29	0.0806	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	AC027763.2--DLG4	4	1	AC027763.2	1154	chr17:6915515:-	DLG4	23700	chr17:7100371:-	ONLY_REF_SPLICE	YES	31	45	0.14	0.1	0.0537	0.0134	AC027763.2->chr17:6779954-6915668:-,DLG4->chr17:7093209-7123021:-,discs_large_homolog_4	MFE280_ENDOMETRIUM	0.1	0.14	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PTPN13--MEPE	4	1	PTPN13	9224	chr4:87614827:+	MEPE	55690	chr4:88755855:+	ONLY_REF_SPLICE	YES	90	0	0.05	1	0.0537	0.0134	PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13,MEPE->chr4:88742563-88767969:+,matrix_extracellular_phosphoglycoprotein	MFE280_ENDOMETRIUM	0.05	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	AFF1--PTPN13	3	2	AFF1	3385	chr4:87869723:+	PTPN13	45951	chr4:87637683:+	ONLY_REF_SPLICE	YES	16	96	0.24	0.05	0.0403	0.0269	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BLCA:2|LUAD:1|LUSC:1],AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13	MFE280_ENDOMETRIUM	0.05	0.24	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SMG1--CTA-363E6.2	3	2	SMG1	1505	chr16:18937272:-	CTA-363E6.2	74526	chr16:19379199:-	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0403	0.0269	SMG1->SMG1_phosphatidylinositol_3-kinase-related_kinase,chr16:18816175-18937776:-,CTA-363E6.2->chr16:19354969-19413015:-	MFE280_ENDOMETRIUM	0.28	1	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BMPR1B--KCNU1	3	1	BMPR1B	2171	chr4:95797051:+	KCNU1	43278	chr8:36763226:+	ONLY_REF_SPLICE	YES	1	13	0.8	0.24	0.0403	0.0134	BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+,KCNU1->chr8:36641842-36793646:+,potassium_calcium-activated_channel_subfamily_U_member_1	MFE280_ENDOMETRIUM	0.24	0.8	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BRD1--DENND6B	3	1	BRD1	13523	chr22:50181038:-	DENND6B	23396	chr22:50757432:-	ONLY_REF_SPLICE	YES	33	9	0.11	0.31	0.0403	0.0134	BRD1->bromodomain_containing_1,chr22:50166931-50221160:-,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	MFE280_ENDOMETRIUM	0.11	0.31	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SLC22A17--MYH7	2	5	SLC22A17	4485	chr14:23818481:-	MYH7	12060	chr14:23902949:-	ONLY_REF_SPLICE	YES	28	0	0.2	1	0.0269	0.0671	LOCAL_REARRANGEMENT:-:[59826],SLC22A17->chr14:23815515-23822121:-,solute_carrier_family_22_member_17,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	MFE280_ENDOMETRIUM	0.2	1	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	DDA1--MYO9B	3	0	DDA1	5254	chr19:17430534:+	MYO9B	47076	chr19:17320395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:+:[94981],DDA1->DET1_and_DDB1_associated_1,chr19:17420327-17434110:+,MYO9B->chr19:17186591-17325346:+,myosin_IXB	MFE280_ENDOMETRIUM	1	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SMG1--CTA-363E6.2	1	5	SMG1	1776	chr16:18937001:-	CTA-363E6.2	72086	chr16:19407571:-	ONLY_REF_SPLICE	YES	15	0	0.29	1	0.0134	0.0671	SMG1->SMG1_phosphatidylinositol_3-kinase-related_kinase,chr16:18816175-18937776:-,CTA-363E6.2->chr16:19354969-19413015:-	MFE280_ENDOMETRIUM	0.29	1	0.0805	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ADH5--SEC31A	2	0	ADH5	10079	chr4:99993724:-	SEC31A	47563	chr4:83750211:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	ADH5->alcohol_dehydrogenase_5_(class_III),_chi_polypeptide,chr4:99992132-100009952:-,SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	DDX5--SMURF2	2	0	DDX5	8651	chr17:62496667:-	SMURF2	24668	chr17:62568074:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:-:[34096],DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ESCO1--AC068542.1	2	0	ESCO1	1262	chr18:19180584:-	AC068542.1	23321	chr2:115586449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1,AC068542.1->chr2:115586009-115591125:-	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	EXD3--RABL6	2	0	EXD3	1149	chr9:140317566:-	RABL6	36936	chr9:139717977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	1	0	0	3	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	NHEJ1--ATG9A	2	0	NHEJ1	6332	chr2:220011402:-	ATG9A	20204	chr2:220090294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:-:[48907],NHEJ1->chr2:219940039-220025587:-,non-homologous_end_joining_factor_1,ATG9A->autophagy_related_9A,chr2:220074494-220094439:-	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	2	0	PDDC1	2886	chr11:775066:-	CHID1	30552	chr11:870499:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PKIB--RP11-532N4.2	2	0	PKIB	8843	chr6:122954512:+	RP11-532N4.2	23455	chr6:123755081:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	PKIB->chr6:122793076-123047518:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_beta,RP11-532N4.2->chr6:123732857-123792904:+	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SNX29--RP11-166B2.8	2	0	SNX29	4327	chr16:12096900:+	RP11-166B2.8	42704	chr16:11989346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:+:[81126],SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,RP11-166B2.8->chr16:11945506-11989468:+	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SLX4--ADCY9	1	2	SLX4	3176	chr16:3658431:-	ADCY9	30444	chr16:4043511:-	ONLY_REF_SPLICE	NO	16	12	0.16	0.2	0.0134	0.0269	SLX4->SLX4_structure-specific_endonuclease_subunit,chr16:3631182-3661599:-,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-	MFE280_ENDOMETRIUM	0.16	0.2	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SMG1--CTA-363E6.2	1	2	SMG1	1505	chr16:18937272:-	CTA-363E6.2	75593	chr16:19366123:-	ONLY_REF_SPLICE	YES	13	0	0.19	1	0.0134	0.0269	SMG1->SMG1_phosphatidylinositol_3-kinase-related_kinase,chr16:18816175-18937776:-,CTA-363E6.2->chr16:19354969-19413015:-	MFE280_ENDOMETRIUM	0.19	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	AC074286.1--PDE11A	1	1	AC074286.1	1119	chr2:178257301:-	PDE11A	40951	chr2:178592900:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0134	0.0134	AC074286.1->chr2:178148236-178257419:-,PDE11A->Oncogene{Bushman},chr2:178487980-178973066:-,phosphodiesterase_11A	MFE280_ENDOMETRIUM	0.67	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ATAD5--SEZ6	1	1	ATAD5	21895	chr17:29214390:+	SEZ6	30785	chr17:27309057:-	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0134	0.0134	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	MFE280_ENDOMETRIUM	0.25	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	GMEB1--RP11-442N24__B.1	1	1	GMEB1	2285	chr1:29010252:+	RP11-442N24__B.1	22049	chr1:28974705:+	ONLY_REF_SPLICE	NO	20	0	0.09	1	0.0134	0.0134	LOCAL_REARRANGEMENT:+:[20151],GMEB1->chr1:28995244-29045865:+,glucocorticoid_modulatory_element_binding_protein_1,RP11-442N24__B.1->chr1:28969740-28975093:+	MFE280_ENDOMETRIUM	0.09	1	0.0268	TRUE	0	1	0	2	1	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RP11-773D16.1--RAPGEF4	1	1	RP11-773D16.1	3411	chr10:81574369:-	RAPGEF4	13233	chr2:173659753:+	ONLY_REF_SPLICE	YES	45	1	0.04	0.67	0.0134	0.0134	RP11-773D16.1->chr10:81563813-81586350:-,RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+	MFE280_ENDOMETRIUM	0.04	0.67	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000192
KMRC1_KIDNEY	TCERG1--RBM27	7	0	TCERG1	18530	chr5:145872601:+	RBM27	53095	chr5:145664185:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0848	0	{Klijn_CCL:Sarcomatoid=1},TCERG1->chr5:145826874-145891524:+,transcription_elongation_regulator_1,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	KMRC1_KIDNEY	1	1	0.0848	TRUE	0	0	0	1	0	TRUE	ACH-000684
KMRC1_KIDNEY	SAR1A--KLHL7	2	0	SAR1A	1111	chr10:71930169:-	KLHL7	21797	chr7:23163396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A,KLHL7->chr7:23145353-23217533:+,kelch_like_family_member_7	KMRC1_KIDNEY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000684
KMRC1_KIDNEY	SEPT9--TPM1	2	0	SEPT9	4441	chr17:75284292:+	TPM1	52702	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	KMRC1_KIDNEY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000684
KMRC1_KIDNEY	BAZ2B--MARCH7	1	1	BAZ2B	1451	chr2:160472753:-	MARCH7	64626	chr2:160585520:+	ONLY_REF_SPLICE	NO	0	46	1	0.04	0.0121	0.0121	GTEx_v2:{count=4;pct=0.05%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1},LOCAL_INVERSION:-:+:[95797],BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7	KMRC1_KIDNEY	0.04	1	0.0242	TRUE	1	1	0	4	1	TRUE	ACH-000684
J82_URINARY_TRACT	CEP85--ZNF593	27	11	CEP85	8479	chr1:26586293:+	ZNF593	20921	chr1:26496909:+	ONLY_REF_SPLICE	YES	42	159	0.47	0.19	0.3254	0.1326	LOCAL_REARRANGEMENT:+:[62140],CEP85->centrosomal_protein_85,chr1:26560691-26605299:+,ZNF593->chr1:26496362-26498551:+,zinc_finger_protein_593	J82_URINARY_TRACT	0.19	0.47	0.458	TRUE	0	0	0	1	0	TRUE	ACH-000396
J82_URINARY_TRACT	KLF7--AC007879.5	19	8	KLF7	2801	chr2:208030191:-	AC007879.5	23383	chr2:208197419:-	ONLY_REF_SPLICE	YES	41	0	0.4	1	0.229	0.0964	LOCAL_REARRANGEMENT:-:[72597],KLF7->Kruppel-like_factor_7_(ubiquitous),chr2:207938861-208031991:-,AC007879.5->chr2:208104588-208394519:-	J82_URINARY_TRACT	0.4	1	0.3254	TRUE	0	0	0	1	0	TRUE	ACH-000396
J82_URINARY_TRACT	HAUS2--SNAP23	14	3	HAUS2	1156	chr15:42841163:+	SNAP23	26197	chr15:42821873:+	ONLY_REF_SPLICE	YES	44	137	0.28	0.11	0.1687	0.0362	LOCAL_REARRANGEMENT:+:[3461],HAUS2->HAUS_augmin_like_complex_subunit_2,chr15:42841008-42862192:+,SNAP23->chr15:42783431-42837547:+,synaptosome_associated_protein_23kDa	J82_URINARY_TRACT	0.11	0.28	0.2049	TRUE	0	0	0	1	0	TRUE	ACH-000396
J82_URINARY_TRACT	KLF7--AC007879.5	2	8	KLF7	2801	chr2:208030191:-	AC007879.5	22239	chr2:208282468:-	ONLY_REF_SPLICE	YES	41	0	0.2	1	0.0241	0.0964	LOCAL_REARRANGEMENT:-:[72597],KLF7->Kruppel-like_factor_7_(ubiquitous),chr2:207938861-208031991:-,AC007879.5->chr2:208104588-208394519:-	J82_URINARY_TRACT	0.2	1	0.1205	TRUE	0	0	0	1	0	TRUE	ACH-000396
J82_URINARY_TRACT	POLE--ANKLE2	4	0	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0482	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	J82_URINARY_TRACT	1	1	0.0482	TRUE	0	0	0	11	0	TRUE	ACH-000396
J82_URINARY_TRACT	TMSB10--TMSB4X	2	0	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	J82_URINARY_TRACT	1	1	0.0241	TRUE	0	1	0	17	1	TRUE	ACH-000396
J82_URINARY_TRACT	ZMYND8--GNAS	2	0	ZMYND8	6534	chr20:45976600:-	GNAS	53879	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	J82_URINARY_TRACT	1	1	0.0241	TRUE	0	0	0	2	0	TRUE	ACH-000396
NCIH508_LARGE_INTESTINE	VTI1A--TCF7L2	55	16	VTI1A	5788	chr10:114220341:+	TCF7L2	30150	chr10:114900943:+	ONLY_REF_SPLICE	YES	22	24	0.76	0.75	0.5924	0.1723	Cosmic{samples=98,mutations=4,papers=1},GTEx&tcga_normals:1/3694=0.03%,VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2	NCIH508_LARGE_INTESTINE	0.75	0.76	0.7647	TRUE	0	0	0	1	0	TRUE	ACH-000360
NCIH508_LARGE_INTESTINE	HEATR5A--RP11-966I7.2	33	11	HEATR5A	36123	chr14:31777099:-	RP11-966I7.2	50156	chr14:29253736:-	INCL_NON_REF_SPLICE	YES	50	1	0.47	0.98	0.3555	0.1185	HEATR5A->HEAT_repeat_containing_5A,chr14:31760994-31889788:-,RP11-966I7.2->chr14:29252697-29254993:-	NCIH508_LARGE_INTESTINE	0.47	0.98	0.474	TRUE	0	0	0	1	0	TRUE	ACH-000360
NCIH508_LARGE_INTESTINE	ARHGAP5--RP11-320M16.2	3	0	ARHGAP5	8068	chr14:32563592:+	RP11-320M16.2	24770	chr14:32854350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,RP11-320M16.2->chr14:32842543-32887180:-	NCIH508_LARGE_INTESTINE	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000360
NCIH508_LARGE_INTESTINE	PIH1D2--ABCA5	3	0	PIH1D2	2536	chr11:111943463:-	ABCA5	45537	chr17:67252424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	PIH1D2->PIH1_domain_containing_2,chr11:111934734-111944998:-,ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-	NCIH508_LARGE_INTESTINE	1	1	0.0323	TRUE	1	3	0	1	3	TRUE	ACH-000360
NCIH508_LARGE_INTESTINE	CDK7--PPM1G	2	0	CDK7	1613	chr5:68531280:+	PPM1G	18030	chr2:27610025:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	CDK7->Oncogene{Bushman},chr5:68530668-68573250:+,cyclin-dependent_kinase_7,PPM1G->chr2:27604061-27632554:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1G	NCIH508_LARGE_INTESTINE	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000360
NCIH508_LARGE_INTESTINE	ZNF783--LTB4R	2	0	ZNF783	2583	chr7:148963821:+	LTB4R	25232	chr14:24784843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	ZNF783->chr7:148959262-148994393:+,zinc_finger_family_member_783,LTB4R->chr14:24780656-24787242:+,leukotriene_B4_receptor	NCIH508_LARGE_INTESTINE	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000360
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544L4.1--TBC1D7	56	5	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5189	chr6:13328738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.472	0.0421	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5141	TRUE	0	0	0	5	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544L4.1--TBC1D7	47	5	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5183	chr6:13328744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3962	0.0421	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4383	TRUE	0	0	0	5	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544L4.1--TBC1D7	43	5	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5177	chr6:13328750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3624	0.0421	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4045	TRUE	0	0	0	5	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV38-2DV8--TRAJ26	20	1	TRAV38-2DV8	1643	chr14:22749630:+	TRAJ26	4644	chr14:22987423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1686	0.0084	HGNC_GENEFAM,TRAV38-2DV8->T_cell_receptor_alpha_variable_38-2/delta_variable_8,chr14:22748988-22749631:+,TRAJ26->T_cell_receptor_alpha_joining_26,chr14:22987424-22987483:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.177	TRUE	0	0	0	1	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB8--MT2A	8	0	PSMB8	2684	chr6:32810797:-	MT2A	8371	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	PSMB8->chr6:32808494-32812480:-,proteasome_subunit_beta_8,MT2A->chr16:56642111-56643409:+,metallothionein_2A	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0674	TRUE	0	0	0	3	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZMIZ1--EEF1A1	6	0	ZMIZ1	29626	chr10:81072538:+	EEF1A1	40845	chr6:74228494:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	ZMIZ1->Oncogene{Bushman},chr10:80828792-81076276:+,zinc_finger_MIZ-type_containing_1,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0506	TRUE	0	0	0	1	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VIM--ACTB	4	0	VIM	2136	chr10:17271393:+	ACTB	15629	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0337	TRUE	0	0	0	9	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VIM--ACTB	3	0	VIM	2124	chr10:17271381:+	ACTB	17037	chr7:5568815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VIM--ACTB	3	0	VIM	2082	chr10:17271339:+	ACTB	15618	chr7:5570234:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	9	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--AP3B1	2	0	CPSF6	11046	chr12:69656342:+	AP3B1	26296	chr5:77512061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND1A--PSMB7	2	0	DENND1A	2335	chr9:126641230:-	PSMB7	50112	chr9:127146935:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Heart_-_Atrial_Appendage=1},DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	1	0	2	1	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF3H--RAD21	2	0	EIF3H	7051	chr8:117738255:-	RAD21	24431	chr8:117879000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	LOCAL_REARRANGEMENT:-:[79010],EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	7	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--TNPO2	2	0	OAZ1	1259	chr19:2269743:+	TNPO2	11025	chr19:12831804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,TNPO2->chr19:12810008-12834825:-,transportin_2	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000077
HCC2279_LUNG	CACNB4--VWC2	61	31	CACNB4	1750	chr2:152954844:-	VWC2	35978	chr7:49951630:+	ONLY_REF_SPLICE	YES	17	0	0.84	1	0.8016	0.4074	CACNB4->calcium_voltage-gated_channel_auxiliary_subunit_beta_4,chr2:152689290-152955593:-,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	HCC2279_LUNG	0.84	1	1.209	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	ST6GALNAC3--PEPD	27	24	ST6GALNAC3	1166	chr1:76540569:+	PEPD	30972	chr19:33892775:-	ONLY_REF_SPLICE	YES	6	172	0.89	0.23	0.3548	0.3154	ST6GALNAC3->ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_3,chr1:76540404-77100286:+,PEPD->chr19:33877856-34012700:-,peptidase_D	HCC2279_LUNG	0.23	0.89	0.6702	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	CACNB4--VWC2	19	34	CACNB4	4497	chr2:152828059:-	VWC2	35978	chr7:49951630:+	ONLY_REF_SPLICE	YES	13	0	0.8	1	0.2497	0.4468	CACNB4->calcium_voltage-gated_channel_auxiliary_subunit_beta_4,chr2:152689290-152955593:-,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	HCC2279_LUNG	0.8	1	0.6965	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	LRP12--ATP6V0D2	24	12	LRP12	1206	chr8:105601047:-	ATP6V0D2	24682	chr8:87111218:+	INCL_NON_REF_SPLICE	YES	97	3	0.27	0.92	0.3154	0.1577	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	HCC2279_LUNG	0.27	0.92	0.4731	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	LRP12--ATP6V0D2	14	14	LRP12	1206	chr8:105601047:-	ATP6V0D2	24086	chr8:87110622:+	ONLY_REF_SPLICE	YES	97	0	0.22	1	0.184	0.184	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	HCC2279_LUNG	0.22	1	0.368	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	LRP12--ATP6V0D2	9	13	LRP12	1206	chr8:105601047:-	ATP6V0D2	24597	chr8:87111133:+	ONLY_REF_SPLICE	YES	97	0	0.18	1	0.1183	0.1708	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	HCC2279_LUNG	0.18	1	0.2891	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	RP11-59N23.3--CMAS	9	11	RP11-59N23.3	1459	chr12:21815705:+	CMAS	6999	chr12:22208083:+	ONLY_REF_SPLICE	YES	4	273	0.83	0.07	0.1183	0.1446	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	HCC2279_LUNG	0.07	0.83	0.2629	TRUE	0	14	5	5	10	TRUE	ACH-000731
HCC2279_LUNG	NUDCD1--SYBU	8	3	NUDCD1	11896	chr8:110283234:-	SYBU	34627	chr8:110592231:-	ONLY_REF_SPLICE	YES	208	27	0.05	0.29	0.1051	0.0394	NUDCD1->NudC_domain_containing_1,chr8:110253148-110346614:-,SYBU->chr8:110586207-110704020:-,syntabulin	HCC2279_LUNG	0.05	0.29	0.1445	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	RP11-59N23.3--CMAS	4	11	RP11-59N23.3	2631	chr12:21913019:+	CMAS	6999	chr12:22208083:+	INCL_NON_REF_SPLICE	YES	0	273	1	0.05	0.0526	0.1446	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	HCC2279_LUNG	0.05	1	0.1972	TRUE	0	0	0	3	0	TRUE	ACH-000731
HCC2279_LUNG	ELF2--SLC7A11	5	3	ELF2	1252	chr4:140098121:-	SLC7A11	34472	chr4:139104459:-	ONLY_REF_SPLICE	YES	10	30	0.44	0.21	0.0657	0.0394	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,SLC7A11->chr4:139085251-139163503:-,solute_carrier_family_7_member_11	HCC2279_LUNG	0.21	0.44	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	GALNT13--SCN2A	5	2	GALNT13	4761	chr2:154801152:+	SCN2A	29366	chr2:166152283:+	ONLY_REF_SPLICE	YES	27	0	0.21	1	0.0657	0.0263	GALNT13->chr2:154728426-155310361:+,polypeptide_N-acetylgalactosaminyltransferase_13,SCN2A->chr2:166095912-166248818:+,sodium_voltage-gated_channel_alpha_subunit_2	HCC2279_LUNG	0.21	1	0.092	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	INADL--DNAJC6	4	6	INADL	36863	chr1:62483619:+	DNAJC6	68120	chr1:65831568:+	ONLY_REF_SPLICE	YES	26	24	0.28	0.29	0.0526	0.0788	{Klijn_CCL:Lung=1},INADL->Oncogene{Bushman},chr1:62208149-62629592:+,DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+	HCC2279_LUNG	0.28	0.29	0.1314	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	CTD-2023M8.1--DEFB112	4	5	CTD-2023M8.1	1176	chr5:18746107:-	DEFB112	6354	chr6:50011514:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0.0657	CTD-2023M8.1->chr5:18704542-18746282:-,DEFB112->chr6:50011288-50016364:-,defensin_beta_112	HCC2279_LUNG	1	1	0.1183	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	ZCCHC4--RP11-302F12.3	4	2	ZCCHC4	3354	chr4:25317022:+	RP11-302F12.3	20139	chr4:25620871:+	ONLY_REF_SPLICE	YES	19	0	0.24	1	0.0526	0.0263	ZCCHC4->chr4:25314407-25372005:+,zinc_finger_CCHC-type_containing_4,RP11-302F12.3->chr4:25610333-25621087:+	HCC2279_LUNG	0.24	1	0.0789	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	ELF2--SLC7A11	2	6	ELF2	1252	chr4:140098121:-	SLC7A11	33348	chr4:139106398:-	ONLY_REF_SPLICE	YES	10	18	0.44	0.31	0.0263	0.0788	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,SLC7A11->chr4:139085251-139163503:-,solute_carrier_family_7_member_11	HCC2279_LUNG	0.31	0.44	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	CMTM4--RP11-1M18.1	3	0	CMTM4	1368	chr16:66730243:-	RP11-1M18.1	16246	chrX:6624507:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,RP11-1M18.1->chrX:6585906-6639585:-	HCC2279_LUNG	1	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	LRP12--ATP6V0D2	1	6	LRP12	1206	chr8:105601047:-	ATP6V0D2	25802	chr8:87125938:+	ONLY_REF_SPLICE	NO	97	18	0.07	0.28	0.0131	0.0788	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	HCC2279_LUNG	0.07	0.28	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	AAK1--PSMB1	2	0	AAK1	3410	chr2:69870010:-	PSMB1	42261	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	HCC2279_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	CMTM4--RP11-1M18.1	2	0	CMTM4	1368	chr16:66730243:-	RP11-1M18.1	15118	chrX:6639585:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,RP11-1M18.1->chrX:6585906-6639585:-	HCC2279_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	MAD1L1--PTTG1	2	0	MAD1L1	19401	chr7:2188787:-	PTTG1	43513	chr5:159849309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	HCC2279_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	VPS13C--YWHAH	2	0	VPS13C	48152	chr15:62228796:-	YWHAH	98164	chr22:32352126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	VPS13C->chr15:62144588-62352672:-,vacuolar_protein_sorting_13_homolog_C,YWHAH->chr22:32340447-32353590:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_eta	HCC2279_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	ZCCHC4--RP11-302F12.3	1	2	ZCCHC4	3354	chr4:25317022:+	RP11-302F12.3	18948	chr4:25610333:+	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0131	0.0263	ZCCHC4->chr4:25314407-25372005:+,zinc_finger_CCHC-type_containing_4,RP11-302F12.3->chr4:25610333-25621087:+	HCC2279_LUNG	0.14	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	FAM134B--EFHC1	1	1	FAM134B	3087	chr5:16572105:-	EFHC1	18502	chr6:52288744:+	ONLY_REF_SPLICE	YES	3	9	0.4	0.18	0.0131	0.0131	FAM134B->chr5:16473147-16617167:-,family_with_sequence_similarity_134_member_B,EFHC1->EF-hand_domain_containing_1,chr6:52285106-52387892:+	HCC2279_LUNG	0.18	0.4	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	SSBP1--MGAM	1	1	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0.0131	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	HCC2279_LUNG	1	1	0.0262	TRUE	0	1	0	7	1	TRUE	ACH-000731
HCC2279_LUNG	STK3--VPS13B	1	1	STK3	11120	chr8:99837743:-	VPS13B	39422	chr8:100025988:+	ONLY_REF_SPLICE	NO	27	0	0.07	1	0.0131	0.0131	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Heart_-_Left_Ventricle=1},LOCAL_INVERSION:-:+:[70439],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast)	HCC2279_LUNG	0.07	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000731
NCIH2347_LUNG	CNTLN--RP11-132E11.2	18	3	CNTLN	2533	chr9:17143374:+	RP11-132E11.2	42578	chr9:17112271:+	ONLY_REF_SPLICE	YES	26	0	0.45	1	0.1769	0.0295	LOCAL_REARRANGEMENT:+:[22167],CNTLN->centlein,chr9:17134980-17503921:+,RP11-132E11.2->chr9:17048917-17112813:+	NCIH2347_LUNG	0.45	1	0.2064	TRUE	0	1	0	1	1	TRUE	ACH-000875
NCIH2347_LUNG	RCC1--RHOA	7	0	RCC1	2175	chr1:28834672:+	RHOA	22152	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0688	0	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	NCIH2347_LUNG	1	1	0.0688	TRUE	0	1	0	6	0	TRUE	ACH-000875
NCIH2347_LUNG	KRT7--TUBA1C	5	0	KRT7	1809	chr12:52627112:+	TUBA1C	26832	chr12:49666110:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	KRT7->chr12:52626304-52645970:+,keratin_7,TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c	NCIH2347_LUNG	1	1	0.0491	TRUE	0	0	0	4	0	TRUE	ACH-000875
NCIH2347_LUNG	AP000350.4--ACTG1	4	0	AP000350.4	3718	chr22:24236667:-	ACTG1	9817	chr17:79479156:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	AP000350.4->chr22:24236613-24241117:-,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH2347_LUNG	1	1	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-000875
NCIH2347_LUNG	CCNB1--PAFAH1B1	2	0	CCNB1	5804	chr5:68471364:+	PAFAH1B1	26445	chr17:2583458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	CCNB1->Oncogene{Bushman},chr5:68462837-68474072:+,cyclin_B1,PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1	NCIH2347_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000875
NCIH2347_LUNG	JMJD1C--RP11-29G8.3	2	0	JMJD1C	2633	chr10:65140078:-	RP11-29G8.3	36225	chr13:76134889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,RP11-29G8.3->chr13:76123909-76381256:+	NCIH2347_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000875
NCIH2347_LUNG	NCEH1--ECT2	2	0	NCEH1	1372	chr3:172428637:-	ECT2	35027	chr3:172533394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	LOCAL_INVERSION:-:+:[39464],NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,ECT2->Oncogene{Bushman},chr3:172468472-172539264:+,epithelial_cell_transforming_2	NCIH2347_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000875
NCIH2347_LUNG	RBM10--PHF16	2	0	RBM10	2759	chrX:47006897:+	PHF16	20053	chrX:46844285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	LOCAL_REARRANGEMENT:+:[83627],RBM10->ArcherDX_panel,FoundationOne_panel,RNA_binding_motif_protein_10,chrX:47004268-47046212:+,PHF16->chrX:46771711-46920641:+	NCIH2347_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000875
NCIH2347_LUNG	VEZT--WIPI2	2	0	VEZT	1141	chr12:95611662:+	WIPI2	44771	chr7:5267735:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	VEZT->chr12:95611522-95696566:+,vezatin,_adherens_junctions_transmembrane_protein,WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+	NCIH2347_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000875
NCIH727_LUNG	PRSS3P1--KRT8	330	0	PRSS3P1	3295	chr7:142470637:+	KRT8	17295	chr12:53293794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.9838	0	PRSS3P1->chr7:142468264-142471794:+,protease,_serine_3_pseudogene_1,KRT8->chr12:53290977-53343738:-,keratin_8	NCIH727_LUNG	1	1	2.9838	TRUE	1	0	0	3	0	TRUE	ACH-000775
NCIH727_LUNG	ASAP1--FAM19A5	138	21	ASAP1	11022	chr8:131249168:-	FAM19A5	50160	chr22:49042409:+	ONLY_REF_SPLICE	YES	30	19	0.84	0.89	1.2478	0.1899	{Klijn_CCL:Brain=1,Lung=1},ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM19A5->chr22:48885272-49246724:+,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A5	NCIH727_LUNG	0.84	0.89	1.4377	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	FBRSL1--STX2	102	21	FBRSL1	4632	chr12:133084936:+	STX2	28871	chr12:131311812:-	ONLY_REF_SPLICE	YES	82	21	0.6	0.85	0.9223	0.1899	{Klijn_CCL:Lung=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,STX2->chr12:131274145-131323811:-,syntaxin_2	NCIH727_LUNG	0.6	0.85	1.1122	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	SPIDR--ZFAT	86	15	SPIDR	13881	chr8:48320523:+	ZFAT	66520	chr8:135521992:-	ONLY_REF_SPLICE	YES	43	13	0.7	0.89	0.7776	0.1356	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing	NCIH727_LUNG	0.7	0.89	0.9132	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	FMNL2--UPP2	65	13	FMNL2	1484	chr2:153192234:+	UPP2	47198	chr2:158991260:+	ONLY_REF_SPLICE	YES	18	0	0.81	1	0.5877	0.1175	FMNL2->chr2:153191751-153506348:+,formin_like_2,UPP2->chr2:158733214-158992666:+,uridine_phosphorylase_2	NCIH727_LUNG	0.81	1	0.7052	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	SSH2--MICAL3	41	10	SSH2	1339	chr17:28256956:-	MICAL3	38222	chr22:18389652:-	ONLY_REF_SPLICE	YES	35	11	0.59	0.82	0.3707	0.0904	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3	NCIH727_LUNG	0.59	0.82	0.4611	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	ARHGAP5--AKAP6	37	17	ARHGAP5	9216	chr14:32586493:+	AKAP6	41154	chr14:33147517:+	ONLY_REF_SPLICE	YES	99	5	0.35	0.92	0.3346	0.1537	{Klijn_CCL:Lung=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH727_LUNG	0.35	0.92	0.4883	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	PPP1R8--SMAP2	35	18	PPP1R8	2650	chr1:28159327:+	SMAP2	13881	chr1:40827972:+	ONLY_REF_SPLICE	YES	63	0	0.46	1	0.3165	0.1628	PPP1R8->chr1:28157289-28178187:+,protein_phosphatase_1_regulatory_subunit_8,SMAP2->chr1:40810522-40888998:+,small_ArfGAP2	NCIH727_LUNG	0.46	1	0.4793	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	HPN--ASIC2	28	18	HPN	2191	chr19:35532776:+	ASIC2	20125	chr17:31439085:-	ONLY_REF_SPLICE	YES	146	40	0.24	0.53	0.2532	0.1628	HPN->chr19:35531410-35557475:+,hepsin,ASIC2->acid_sensing_ion_channel_subunit_2,chr17:31340105-32501983:-	NCIH727_LUNG	0.24	0.53	0.416	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	ST3GAL3--SSBP3	27	11	ST3GAL3	11381	chr1:44303983:+	SSBP3	29109	chr1:54870603:-	ONLY_REF_SPLICE	YES	20	41	0.66	0.48	0.2441	0.0995	{Klijn_CCL:Lung=1},ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,SSBP3->Oncogene{Bushman},chr1:54691105-54879152:-,single_stranded_DNA_binding_protein_3	NCIH727_LUNG	0.48	0.66	0.3436	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	CCDC91--RP11-993B23.3	25	1	CCDC91	5569	chr12:28343574:+	RP11-993B23.3	34818	chr12:28111452:+	INCL_NON_REF_SPLICE	YES	96	0	0.21	1	0.226	0.009	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RP11-993B23.3->chr12:28111450-28122746:+	NCIH727_LUNG	0.21	1	0.235	TRUE	0	0	0	2	0	TRUE	ACH-000775
NCIH727_LUNG	SPECC1L--DIP2B	20	9	SPECC1L	1198	chr22:24666983:+	DIP2B	61935	chr12:51126205:+	INCL_NON_REF_SPLICE	YES	27	27	0.52	0.52	0.1808	0.0814	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B	NCIH727_LUNG	0.52	0.52	0.2622	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	TNS3--PKD1L1	18	9	TNS3	35383	chr7:47336680:-	PKD1L1	82264	chr7:47886669:-	ONLY_REF_SPLICE	YES	149	0	0.15	1	0.1628	0.0814	{Klijn_CCL:Lung=2},TNS3->chr7:47314752-47622156:-,tensin_3,PKD1L1->chr7:47814250-47988088:-,polycystin_1_like_1,_transient_receptor_potential_channel_interacting	NCIH727_LUNG	0.15	1	0.2442	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	ARHGAP5--AKAP6	17	10	ARHGAP5	8068	chr14:32563592:+	AKAP6	41154	chr14:33147517:+	ONLY_REF_SPLICE	YES	83	5	0.25	0.84	0.1537	0.0904	{Klijn_CCL:Lung=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH727_LUNG	0.25	0.84	0.2441	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	SIK3--PCSK7	17	2	SIK3	1295	chr11:116968859:-	PCSK7	48642	chr11:117090474:-	ONLY_REF_SPLICE	YES	11	71	0.63	0.21	0.1537	0.0181	{Klijn_CCL:Lung=1},SIK3->Oncogene{Bushman},SIK_family_kinase_3,chr11:116714118-116969153:-,PCSK7->Oncogene{Bushman},chr11:117075053-117103241:-,proprotein_convertase_subtilisin/kexin_type_7	NCIH727_LUNG	0.21	0.63	0.1718	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	SPECC1L--DIP2B	12	5	SPECC1L	1166	chr22:24666951:+	DIP2B	63050	chr12:51127918:+	ONLY_REF_SPLICE	YES	23	30	0.42	0.36	0.1085	0.0452	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B	NCIH727_LUNG	0.36	0.42	0.1537	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	PPP1R8--SMAP2	8	8	PPP1R8	2650	chr1:28159327:+	SMAP2	18086	chr1:40872408:+	ONLY_REF_SPLICE	YES	63	47	0.2	0.25	0.0723	0.0723	PPP1R8->chr1:28157289-28178187:+,protein_phosphatase_1_regulatory_subunit_8,SMAP2->chr1:40810522-40888998:+,small_ArfGAP2	NCIH727_LUNG	0.2	0.25	0.1446	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	ST3GAL3--SSBP3	7	11	ST3GAL3	12555	chr1:44323980:+	SSBP3	29109	chr1:54870603:-	ONLY_REF_SPLICE	YES	14	41	0.56	0.31	0.0633	0.0995	{Klijn_CCL:Lung=1},ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,SSBP3->Oncogene{Bushman},chr1:54691105-54879152:-,single_stranded_DNA_binding_protein_3	NCIH727_LUNG	0.31	0.56	0.1628	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MICAL3--SSH2	7	2	MICAL3	2388	chr22:18484159:-	SSH2	70284	chr17:28120955:-	ONLY_REF_SPLICE	YES	9	4	0.5	0.69	0.0633	0.0181	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2	NCIH727_LUNG	0.5	0.69	0.0814	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	ARHGAP5--AKAP6	7	0	ARHGAP5	2322	chr14:32546641:+	AKAP6	41154	chr14:33147517:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0633	0	{Klijn_CCL:Lung=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH727_LUNG	1	1	0.0633	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	RP11-87H9.2--LINGO2	6	2	RP11-87H9.2	5208	chr9:69084959:+	LINGO2	12603	chr9:28080976:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0.0181	RP11-87H9.2->chr9:69065655-69084989:+,LINGO2->chr9:27948076-28670283:-,leucine_rich_repeat_and_Ig_domain_containing_2	NCIH727_LUNG	1	1	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	FMNL2--CCDC148-AS1	6	0	FMNL2	1484	chr2:153192234:+	CCDC148-AS1	38869	chr2:159063996:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0543	0	FMNL2->chr2:153191751-153506348:+,formin_like_2,CCDC148-AS1->CCDC148_antisense_RNA_1,chr2:159023162-159092681:+	NCIH727_LUNG	1	1	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	FBRSL1--STX2	1	16	FBRSL1	4632	chr12:133084936:+	STX2	29946	chr12:131306333:-	ONLY_REF_SPLICE	NO	82	35	0.17	0.33	0.009	0.1447	{Klijn_CCL:Lung=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,STX2->chr12:131274145-131323811:-,syntaxin_2	NCIH727_LUNG	0.17	0.33	0.1537	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	ASAP1--FAM19A5	2	10	ASAP1	7774	chr8:131370263:-	FAM19A5	50160	chr22:49042409:+	ONLY_REF_SPLICE	YES	35	19	0.26	0.39	0.0181	0.0904	{Klijn_CCL:Brain=1,Lung=1},ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM19A5->chr22:48885272-49246724:+,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A5	NCIH727_LUNG	0.26	0.39	0.1085	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	SEC14L1--C19orf12	4	2	SEC14L1	11207	chr17:75139741:+	C19orf12	38464	chr19:30199330:-	ONLY_REF_SPLICE	YES	41	40	0.13	0.13	0.0362	0.0181	SEC14L1->SEC14_like_lipid_binding_1,chr17:75082798-75213179:+,C19orf12->chr19:30191721-30206364:-,chromosome_19_open_reading_frame_12	NCIH727_LUNG	0.13	0.13	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	NRG1--NRG1-IT2	4	0	NRG1	2344	chr8:31498245:+	NRG1-IT2	31143	chr8:32144617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT2->chr8:32028898-32145082:+	NCIH727_LUNG	1	1	0.0362	TRUE	0	2	0	3	2	TRUE	ACH-000775
NCIH727_LUNG	FBRSL1--STX2	3	1	FBRSL1	2311	chr12:133067447:+	STX2	28871	chr12:131311812:-	ONLY_REF_SPLICE	YES	4	21	0.5	0.16	0.0271	0.009	{Klijn_CCL:Lung=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,STX2->chr12:131274145-131323811:-,syntaxin_2	NCIH727_LUNG	0.16	0.5	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	CASC9--RP11-300E4.2	3	0	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH727_LUNG	1	1	0.0271	TRUE	0	23	0	19	23	TRUE	ACH-000775
NCIH727_LUNG	ST3GAL3--SSBP3	2	3	ST3GAL3	11381	chr1:44303983:+	SSBP3	30464	chr1:54867618:-	ONLY_REF_SPLICE	YES	20	125	0.2	0.04	0.0181	0.0271	{Klijn_CCL:Lung=1},ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,SSBP3->Oncogene{Bushman},chr1:54691105-54879152:-,single_stranded_DNA_binding_protein_3	NCIH727_LUNG	0.04	0.2	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MICAL3--SSH2	2	2	MICAL3	2388	chr22:18484159:-	SSH2	67987	chr17:28175947:-	ONLY_REF_SPLICE	YES	9	4	0.31	0.5	0.0181	0.0181	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2	NCIH727_LUNG	0.31	0.5	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	CS--APOF	2	0	CS	9162	chr12:56676204:-	APOF	18377	chr12:56755973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_REARRANGEMENT:-:[60177],CS->chr12:56665483-56694176:-,citrate_synthase,APOF->apolipoprotein_F,chr12:56754353-56756607:-	NCIH727_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	KCMF1--TSSC1	2	0	KCMF1	1375	chr2:85198590:+	TSSC1	23227	chr2:3341920:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	KCMF1->Oncogene{Bushman},chr2:85198216-85286595:+,potassium_channel_modulatory_factor_1,TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1	NCIH727_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	PSMD14--TANK	2	0	PSMD14	2882	chr2:162173080:+	TANK	40404	chr2:162091853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_REARRANGEMENT:+:[71817],PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14,TANK->TRAF_family_member_associated_NFKB_activator,chr2:161993419-162092732:+	NCIH727_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	RP11-656D10.3--FAF1	2	0	RP11-656D10.3	1073	chr1:40974261:-	FAF1	12864	chr1:51171563:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	RP11-656D10.3->chr1:40958829-40974333:-,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	NCIH727_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	SARS--ATP1A1	2	0	SARS	1211	chr1:109756750:+	ATP1A1	18575	chr1:116926636:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	SARS->chr1:109756540-109780791:+,seryl-tRNA_synthetase,ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+	NCIH727_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	ZNF608--ITGB1	2	0	ZNF608	4819	chr5:124079777:-	ITGB1	40530	chr10:33211274:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	NCIH727_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MICAL3--SSH2	1	2	MICAL3	1279	chr22:18507047:-	SSH2	70284	chr17:28120955:-	ONLY_REF_SPLICE	NO	4	4	0.43	0.43	0.009	0.0181	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2	NCIH727_LUNG	0.43	0.43	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	DMXL2--CYP19A1	1	1	DMXL2	1375	chr15:51914656:-	CYP19A1	67186	chr15:51529206:-	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.009	0.009	DMXL2->Dmx_like_2,chr15:51739908-51915030:-,CYP19A1->Oncogene{Bushman},chr15:51500254-51630807:-,cytochrome_P450_family_19_subfamily_A_member_1	NCIH727_LUNG	0.11	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	RP11-677M14.2--EXOC2	1	1	RP11-677M14.2	1423	chr11:124615811:-	EXOC2	9231	chr6:657250:-	ONLY_REF_SPLICE	YES	3	16	0.4	0.11	0.009	0.009	RP11-677M14.2->chr11:124614530-124616233:-,EXOC2->chr6:485133-693117:-,exocyst_complex_component_2	NCIH727_LUNG	0.11	0.4	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	RP11-758M4.1--RPL7	1	1	RP11-758M4.1	2222	chr8:75525175:+	RPL7	18573	chr8:74205032:-	ONLY_REF_SPLICE	YES	6	33	0.25	0.06	0.009	0.009	RP11-758M4.1->chr8:75512010-75735548:+,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	NCIH727_LUNG	0.06	0.25	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH460_LUNG	PVT1--RP11-89M16.1	2841	3445	PVT1	1202	chr8:128806980:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	202	5	0.97	1	26.9523	32.6823	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.97	1	59.6346	TRUE	0	1	0	3	1	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	431	3732	PVT1	2457	chr8:128808254:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	101	5	0.98	1	4.0888	35.4051	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.98	1	39.4939	TRUE	0	1	0	3	1	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	289	3839	PVT1	2520	chr8:128808317:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	95	5	0.98	1	2.7417	36.4202	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.98	1	39.1619	TRUE	0	1	0	3	1	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	4	3881	PVT1	2520	chr8:128808317:+	RP11-89M16.1	28817	chr8:129576560:-	INCL_NON_REF_SPLICE	YES	95	4	0.98	1	0.0379	36.8186	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.98	1	36.8565	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	1	3839	PVT1	3930	chr8:128815805:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	94	5	0.98	1	0.0095	36.4202	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.98	1	36.4297	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	5	3770	PVT1	2457	chr8:128808254:+	RP11-89M16.1	28813	chr8:129576564:-	INCL_NON_REF_SPLICE	YES	101	4	0.97	1	0.0474	35.7656	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.97	1	35.813	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	4	3769	PVT1	2457	chr8:128808254:+	RP11-89M16.1	28817	chr8:129576560:-	INCL_NON_REF_SPLICE	YES	101	4	0.97	1	0.0379	35.7561	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.97	1	35.794	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	9	3465	PVT1	1202	chr8:128806980:+	RP11-89M16.1	28813	chr8:129576564:-	INCL_NON_REF_SPLICE	YES	202	4	0.95	1	0.0854	32.8721	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.95	1	32.9575	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	4	3458	PVT1	1202	chr8:128806980:+	RP11-89M16.1	28858	chr8:129576519:-	INCL_NON_REF_SPLICE	YES	202	4	0.94	1	0.0379	32.8057	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.94	1	32.8436	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	493	1355	PVT1	1202	chr8:128806980:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	202	13	0.9	0.99	4.677	12.8547	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.9	0.99	17.5317	TRUE	0	2	0	3	2	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	46	1456	PVT1	2457	chr8:128808254:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	101	13	0.94	0.99	0.4364	13.8129	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.94	0.99	14.2493	TRUE	0	2	0	3	2	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	26	1489	PVT1	2520	chr8:128808317:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	95	13	0.94	0.99	0.2467	14.126	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.94	0.99	14.3727	TRUE	0	2	0	3	2	TRUE	ACH-000463
NCIH460_LUNG	SLC38A2--PTMA	204	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9353	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH460_LUNG	1	1	1.9353	TRUE	0	0	0	10	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	19	303	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34734	chr8:129435839:-	ONLY_REF_SPLICE	YES	202	688	0.61	0.32	0.1803	2.8745	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.32	0.61	3.0548	TRUE	0	1	0	3	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	12	310	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34727	chr8:129435846:-	INCL_NON_REF_SPLICE	YES	202	735	0.61	0.3	0.1138	2.9409	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.3	0.61	3.0547	TRUE	0	1	0	3	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	10	314	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34720	chr8:129435853:-	INCL_NON_REF_SPLICE	YES	202	736	0.62	0.31	0.0949	2.9789	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.31	0.62	3.0738	TRUE	0	1	0	3	0	TRUE	ACH-000463
NCIH460_LUNG	TUBA1B--PTMA	36	0	TUBA1B	4414	chr12:49521767:-	PTMA	13136	chr2:232577153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3415	0	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH460_LUNG	1	1	0.3415	TRUE	0	0	0	4	0	TRUE	ACH-000463
NCIH460_LUNG	ANKRD11--CTC-454I21.3	24	0	ANKRD11	4629	chr16:89484692:-	CTC-454I21.3	39317	chr19:37698156:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2277	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,CTC-454I21.3->chr19:37583921-37701414:-	NCIH460_LUNG	1	1	0.2277	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	2	61	PVT1	1202	chr8:128806980:+	RP11-89M16.1	39491	chr8:129426654:-	ONLY_REF_SPLICE	YES	202	1050	0.24	0.06	0.019	0.5787	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.06	0.24	0.5977	TRUE	0	1	0	2	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	1	63	PVT1	2457	chr8:128808254:+	RP11-89M16.1	39491	chr8:129426654:-	ONLY_REF_SPLICE	YES	101	1050	0.39	0.06	0.0095	0.5977	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.06	0.39	0.6072	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	TANGO6--GS1-293C5.1	11	6	TANGO6	19367	chr16:68964198:+	GS1-293C5.1	30642	chr7:95045494:+	INCL_NON_REF_SPLICE	YES	41	0	0.29	1	0.1044	0.0569	TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,GS1-293C5.1->chr7:95045420-95045774:+	NCIH460_LUNG	0.29	1	0.1613	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	ADIPOR2--ZNF565	7	2	ADIPOR2	2309	chr12:1800357:+	ZNF565	25842	chr19:36692952:-	ONLY_REF_SPLICE	YES	31	8	0.23	0.53	0.0664	0.019	ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,ZNF565->chr19:36673188-36737159:-,zinc_finger_protein_565	NCIH460_LUNG	0.23	0.53	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	ADIPOR2--ZNF565	7	2	ADIPOR2	2331	chr12:1800379:+	ZNF565	26916	chr19:36686058:-	ONLY_REF_SPLICE	YES	41	12	0.18	0.43	0.0664	0.019	ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,ZNF565->chr19:36673188-36737159:-,zinc_finger_protein_565	NCIH460_LUNG	0.18	0.43	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	RCC1--UBE2D2	6	0	RCC1	2175	chr1:28834672:+	UBE2D2	22302	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0569	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	NCIH460_LUNG	1	1	0.0569	TRUE	0	20	0	3	11	TRUE	ACH-000463
NCIH460_LUNG	ZRANB2--WDR78	3	12	ZRANB2	7616	chr1:71534959:-	WDR78	32177	chr1:67306354:-	ONLY_REF_SPLICE	YES	325	0	0.04	1	0.0285	0.1138	ZRANB2->chr1:71528974-71546980:-,zinc_finger_RANBP2-type_containing_2,WDR78->WD_repeat_domain_78,chr1:67278568-67390570:-	NCIH460_LUNG	0.04	1	0.1423	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	AP000525.9--LA16c-60G3.6	4	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH460_LUNG	1	1	0.0379	TRUE	0	5	0	18	5	TRUE	ACH-000463
NCIH460_LUNG	ANKRD11--CTC-454I21.3	3	0	ANKRD11	4629	chr16:89484692:-	CTC-454I21.3	44285	chr19:37660956:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,CTC-454I21.3->chr19:37583921-37701414:-	NCIH460_LUNG	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	MKI67--GNAS	3	0	MKI67	1810	chr10:129923840:-	GNAS	42554	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH460_LUNG	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	NAA60--UBA52	3	0	NAA60	4004	chr16:3454648:+	UBA52	27474	chr19:18684103:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	NAA60->N(alpha)-acetyltransferase_60,_NatF_catalytic_subunit,chr16:3415099-3536960:+,chr16:3493611-3536963:+,UBA52->chr19:18682540-18688360:+,ubiquitin_A-52_residue_ribosomal_protein_fusion_product_1	NCIH460_LUNG	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	ADIPOR2--ZNF565	2	2	ADIPOR2	2309	chr12:1800357:+	ZNF565	26916	chr19:36686058:-	ONLY_REF_SPLICE	YES	31	12	0.11	0.25	0.019	0.019	ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,ZNF565->chr19:36673188-36737159:-,zinc_finger_protein_565	NCIH460_LUNG	0.11	0.25	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	AC019221.4--CTBP1	2	0	AC019221.4	2212	chr2:234297013:+	CTBP1	10321	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	AC019221.4->chr2:234263220-234301045:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	CNOT6--RUFY1	2	0	CNOT6	2344	chr5:179922755:+	RUFY1	45157	chr5:179036377:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+,RUFY1->RUN_and_FYVE_domain_containing_1,chr5:178977559-179037027:+	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	DIDO1--GNAS	2	0	DIDO1	1157	chr20:61569148:-	GNAS	44888	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	GPR65--GALC	2	0	GPR65	1099	chr14:88471566:+	GALC	23326	chr14:88417092:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	LOCAL_INVERSION:+:-:[11459],GPR65->G_protein-coupled_receptor_65,chr14:88471468-88478419:+,GALC->chr14:88304164-88460009:-,galactosylceramidase	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	NAA60--ZNF75A	2	0	NAA60	1084	chr16:3415182:+	ZNF75A	32120	chr16:3361753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	PROTCLUST,LOCAL_INVERSION:+,chr16:+:[46247],NAA60->N(alpha)-acetyltransferase_60,_NatF_catalytic_subunit,chr16:3415099-3536960:+,chr16:3493611-3536963:+,ZNF75A->chr16:3355406-3368852:+,zinc_finger_protein_75a	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	NPM1--MFAP3	2	0	NPM1	5819	chr5:170819982:+	MFAP3	17080	chr5:153429117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),MFAP3->chr5:153418466-153600038:+,microfibrillar_associated_protein_3	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PSMD1--SMOC1	2	0	PSMD1	16072	chr2:231951895:+	SMOC1	41076	chr14:70459134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1,SMOC1->SPARC_related_modular_calcium_binding_1,chr14:70320848-70499083:+	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	RBM6--CBFB	2	0	RBM6	3185	chr3:50000118:+	CBFB	38641	chr16:67116116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	RCC1--RNF149	2	0	RCC1	2175	chr1:28834672:+	RNF149	30646	chr2:101888206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	RCC1--TBCA	2	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	NCIH460_LUNG	1	1	0.019	TRUE	0	3	0	7	0	TRUE	ACH-000463
NCIH460_LUNG	RHOA--DAG1	2	0	RHOA	2179	chr3:49449253:-	DAG1	21789	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[55715],RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,DAG1->chr3:49506146-49573048:+,dystroglycan_1	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	8	0	TRUE	ACH-000463
NCIH460_LUNG	RP11-440L14.1--GAK	2	0	RP11-440L14.1	1078	chr4:775560:-	GAK	32943	chr4:864692:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx_FI:{Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[67427],RP11-440L14.1->chr4:756175-775637:-,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	NCIH460_LUNG	1	1	0.019	TRUE	1	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	SLCO4A1--GNAS	2	0	SLCO4A1	1109	chr20:61273905:+	GNAS	33894	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	TET2--UBE2D3	2	0	TET2	2105	chr4:106068136:+	UBE2D3	38083	chr4:103731012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	TET2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:106067032-106200973:+,tet_methylcytosine_dioxygenase_2,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	NCIH460_LUNG	1	1	0.019	TRUE	0	1	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	ADIPOR2--ZNF565	1	3	ADIPOR2	2331	chr12:1800379:+	ZNF565	24746	chr19:36694444:-	ONLY_REF_SPLICE	YES	41	9	0.09	0.31	0.0095	0.0285	ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,ZNF565->chr19:36673188-36737159:-,zinc_finger_protein_565	NCIH460_LUNG	0.09	0.31	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	ADIPOR2--ZNF565	1	2	ADIPOR2	2331	chr12:1800379:+	ZNF565	25842	chr19:36692952:-	ONLY_REF_SPLICE	YES	41	8	0.07	0.27	0.0095	0.019	ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,ZNF565->chr19:36673188-36737159:-,zinc_finger_protein_565	NCIH460_LUNG	0.07	0.27	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000463
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MYO9B--NR2F6	82	26	MYO9B	20393	chr19:17295796:+	NR2F6	49404	chr19:17343435:-	ONLY_REF_SPLICE	YES	31	71	0.78	0.6	0.9561	0.3031	LOCAL_INVERSION:+:-:[17346],MYO9B->chr19:17186591-17325346:+,myosin_IXB,NR2F6->Oncogene{Bushman},chr19:17342692-17356749:-,nuclear_receptor_subfamily_2_group_F_member_6	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.6	0.78	1.2592	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	RP11-49I11.1--AXL	56	27	RP11-49I11.1	1214	chr18:33767198:-	AXL	16713	chr19:41754419:+	ONLY_REF_SPLICE	YES	182	109	0.31	0.43	0.6529	0.3148	RP11-49I11.1->chr18:33759959-33767411:-,AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.31	0.43	0.9677	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	VPS13B--RP11-410L14.2	32	6	VPS13B	2814	chr8:100050794:+	RP11-410L14.2	81482	chr8:100009194:-	ONLY_REF_SPLICE	YES	11	14	0.78	0.73	0.3731	0.07	LOCAL_INVERSION:+:-:[222],VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),RP11-410L14.2->chr8:100008991-100025272:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.73	0.78	0.4431	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	STK3--VPS13B	21	24	STK3	11120	chr8:99837743:-	VPS13B	40598	chr8:100050651:+	ONLY_REF_SPLICE	YES	81	12	0.36	0.79	0.2448	0.2798	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Heart_-_Left_Ventricle=1},LOCAL_INVERSION:-:+:[70439],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast)	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.36	0.79	0.5246	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	RP11-479O16.1--MSMO1	7	0	RP11-479O16.1	5346	chr5:58037747:-	MSMO1	15454	chr4:166263475:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0816	0	RP11-479O16.1->chr5:58037408-58112926:-,MSMO1->chr4:166248775-166264312:+,methylsterol_monooxygenase_1	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0816	TRUE	0	0	0	5	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	PLEKHA1--LRP6	5	3	PLEKHA1	6220	chr10:124152857:+	LRP6	33366	chr12:12356334:-	ONLY_REF_SPLICE	YES	37	8	0.18	0.5	0.0583	0.035	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.18	0.5	0.0933	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	SUMO3--WRB	4	1	SUMO3	1832	chr21:46237863:-	WRB	15959	chr21:40763695:+	ONLY_REF_SPLICE	YES	31	70	0.14	0.07	0.0466	0.0117	SUMO3->chr21:46225532-46238694:-,small_ubiquitin-like_modifier_3,WRB->chr21:40752170-40800454:+,tryptophan_rich_basic_protein	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.07	0.14	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	DPYD--RP11-272L13.3	3	2	DPYD	13320	chr1:98144651:-	RP11-272L13.3	34586	chr1:98407296:-	INCL_NON_REF_SPLICE	YES	21	0	0.19	1	0.035	0.0233	LOCAL_REARRANGEMENT:-:[12425],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,RP11-272L13.3->chr1:98399030-98407302:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.19	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	DST--MYO16	2	4	DST	13246	chr6:56564451:-	MYO16	130438	chr13:109318234:+	ONLY_REF_SPLICE	YES	12	0	0.33	1	0.0233	0.0466	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,MYO16->chr13:109248500-109860355:+,myosin_XVI	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	STK3--VPS13B	1	8	STK3	11120	chr8:99837743:-	VPS13B	41742	chr8:100108540:+	ONLY_REF_SPLICE	NO	81	14	0.1	0.39	0.0117	0.0933	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Heart_-_Left_Ventricle=1},LOCAL_INVERSION:-:+:[70439],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast)	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.1	0.39	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	DPYD--RP11-272L13.3	2	1	DPYD	13320	chr1:98144651:-	RP11-272L13.3	35754	chr1:98399725:-	ONLY_REF_SPLICE	YES	21	1	0.12	0.75	0.0233	0.0117	LOCAL_REARRANGEMENT:-:[12425],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,RP11-272L13.3->chr1:98399030-98407302:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.12	0.75	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	SMYD3--RP11-439E19.8	2	1	SMYD3	1259	chr1:246670356:-	RP11-439E19.8	40216	chr1:246963073:-	ONLY_REF_SPLICE	YES	29	0	0.09	1	0.0233	0.0117	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,RP11-439E19.8->chr1:246935139-246993361:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	STK39--RPE	2	0	STK39	6334	chr2:169018297:-	RPE	26824	chr2:210880697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39,RPE->chr2:210867289-210886300:+,ribulose-5-phosphate-3-epimerase	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	TBC1D19--RBPJ	2	0	TBC1D19	10043	chr4:26641809:+	RBPJ	47147	chr4:26417097:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	TBC1D19->TBC1_domain_family_member_19,chr4:26578059-26756973:+,RBPJ->chr4:26165077-26436541:+,recombination_signal_binding_protein_for_immunoglobulin_kappa_J_region	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	WDR53--SDHAP1	2	0	WDR53	2670	chr3:196293748:-	SDHAP1	25131	chr3:195686957:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	WDR53->WD_repeat_domain_53,chr3:196281056-196295545:-,SDHAP1->chr3:195686619-195717189:-,succinate_dehydrogenase_complex_flavoprotein_subunit_A_pseudogene_1	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	ZNF317--CDK5RAP2	2	0	ZNF317	1213	chr19:9251268:+	CDK5RAP2	13760	chr9:123334319:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ZNF317->chr19:9251056-9274100:+,zinc_finger_protein_317,CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	LRP6--PLEKHA1	1	1	LRP6	2726	chr12:12397196:-	PLEKHA1	40097	chr10:124152697:+	ONLY_REF_SPLICE	NO	8	11	0.2	0.15	0.0117	0.0117	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.15	0.2	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000619
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EXOSC10--RP11-435B5.3	27	4	EXOSC10	3422	chr1:11155815:-	RP11-435B5.3	33845	chr1:143364849:+	ONLY_REF_SPLICE	YES	32	1	0.49	0.97	0.3042	0.0451	EXOSC10->chr1:11126675-11159938:-,exosome_component_10,RP11-435B5.3->chr1:143347958-143376829:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.97	0.3493	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAOK1--TTLL6	8	2	TAOK1	1561	chr17:27718042:+	TTLL6	52917	chr17:46868965:-	ONLY_REF_SPLICE	YES	7	0	0.59	1	0.0901	0.0225	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,TTLL6->chr17:46839597-46894576:-,tubulin_tyrosine_ligase_like_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.1126	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-156P1.3--GOSR1	7	3	RP11-156P1.3	10988	chr17:45110644:-	GOSR1	31452	chr17:28819697:+	ONLY_REF_SPLICE	YES	0	67	1	0.13	0.0789	0.0338	RP11-156P1.3->chr17:45061411-45177689:-,GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.1127	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	6	0	IGH@	97649	chr14:106321045:-	TMSB4X	131824	chrX:12993249:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0676	TRUE	0	0	0	6	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	4	0	IGH@	97640	chr14:106321054:-	TMSB4X	131816	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0451	TRUE	0	0	0	6	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EXOSC10--RP11-435B5.3	3	1	EXOSC10	3422	chr1:11155815:-	RP11-435B5.3	36147	chr1:143370995:+	ONLY_REF_SPLICE	YES	32	1	0.11	0.8	0.0338	0.0113	EXOSC10->chr1:11126675-11159938:-,exosome_component_10,RP11-435B5.3->chr1:143347958-143376829:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.8	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EXOSC10--RP11-435B5.3	1	4	EXOSC10	3422	chr1:11155815:-	RP11-435B5.3	33687	chr1:143364691:+	ONLY_REF_SPLICE	NO	32	1	0.14	0.83	0.0113	0.0451	EXOSC10->chr1:11126675-11159938:-,exosome_component_10,RP11-435B5.3->chr1:143347958-143376829:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.83	0.0564	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFXN4--AKR1A1	2	0	SFXN4	3607	chr10:120921852:-	AKR1A1	19001	chr1:46027461:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	SFXN4->chr10:120900279-120925179:-,sideroflexin_4,AKR1A1->aldo-keto_reductase_family_1,_member_A1_(aldehyde_reductase),chr1:46016215-46035721:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNIP1--SYNPO	2	0	TNIP1	2716	chr5:150466646:-	SYNPO	34735	chr5:150027506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-,SYNPO->chr5:149980642-150038782:+,synaptopodin	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--UBE2J2	2	0	YWHAE	1332	chr17:1303341:-	UBE2J2	17381	chr1:1203372:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,UBE2J2->chr1:1189289-1209265:-,ubiquitin_conjugating_enzyme_E2_J2	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTR3C--RP11-728K20.1	1	2	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	18809	chr7:149589487:-	ONLY_REF_SPLICE	NO	4	0	0.43	1	0.0113	0.0225	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.0338	TRUE	0	3	0	4	2	TRUE	ACH-000073
JHUEM3_ENDOMETRIUM	SLC20A2--NECAB1	153	51	SLC20A2	1389	chr8:42396681:-	NECAB1	33977	chr8:91929720:+	ONLY_REF_SPLICE	YES	55	1	0.79	1	1.9979	0.666	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,NECAB1->N-terminal_EF-hand_calcium_binding_protein_1,chr8:91803778-91971636:+	JHUEM3_ENDOMETRIUM	0.79	1	2.6639	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM49B--SULF1	132	7	FAM49B	1760	chr8:131028616:-	SULF1	36422	chr8:70414109:+	ONLY_REF_SPLICE	YES	0	12	1	0.92	1.7237	0.0914	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,SULF1->chr8:70378859-70573150:+,sulfatase_1	JHUEM3_ENDOMETRIUM	0.92	1	1.8151	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	HDGFRP2--DDX19B	108	37	HDGFRP2	1136	chr19:4472419:+	DDX19B	21453	chr16:70346512:+	ONLY_REF_SPLICE	YES	28	88	0.84	0.62	1.4103	0.4832	HDGFRP2->chr19:4472284-4502223:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	JHUEM3_ENDOMETRIUM	0.62	0.84	1.8935	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CHD7--MED30	96	21	CHD7	6284	chr8:61693989:+	MED30	44975	chr8:118540890:+	ONLY_REF_SPLICE	YES	4	63	0.97	0.65	1.2536	0.2742	CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7,MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30	JHUEM3_ENDOMETRIUM	0.65	0.97	1.5278	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM49B--NKAIN3	70	27	FAM49B	15806	chr8:130874475:-	NKAIN3	31750	chr8:63492098:+	ONLY_REF_SPLICE	YES	148	0	0.4	1	0.9141	0.3526	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,NKAIN3->Na+/K+_transporting_ATPase_interacting_3,chr8:63161150-63912211:+	JHUEM3_ENDOMETRIUM	0.4	1	1.2667	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CPQ--PRKDC	68	24	CPQ	7410	chr8:97797558:+	PRKDC	99686	chr8:48696370:-	ONLY_REF_SPLICE	YES	41	212	0.69	0.3	0.888	0.3134	CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide	JHUEM3_ENDOMETRIUM	0.3	0.69	1.2014	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MED30--NCALD	67	19	MED30	1341	chr8:118533292:+	NCALD	29579	chr8:102731876:-	ONLY_REF_SPLICE	YES	58	7	0.6	0.92	0.8749	0.2481	MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30,NCALD->chr8:102698771-103137135:-,neurocalcin_delta	JHUEM3_ENDOMETRIUM	0.6	0.92	1.123	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	HDGFRP2--DDX19B	37	42	HDGFRP2	1136	chr19:4472419:+	DDX19B	20288	chr16:70333093:+	INCL_NON_REF_SPLICE	YES	28	2	0.74	0.98	0.4832	0.5485	HDGFRP2->chr19:4472284-4502223:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	JHUEM3_ENDOMETRIUM	0.74	0.98	1.0317	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CA8--FAM110B	38	13	CA8	2557	chr8:61192248:-	FAM110B	24759	chr8:59058466:+	ONLY_REF_SPLICE	YES	10	5	0.84	0.91	0.4962	0.1698	CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-,FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B	JHUEM3_ENDOMETRIUM	0.84	0.91	0.666	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	33	21	GRB10	10466	chr7:50823584:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	YES	11	22	0.83	0.71	0.4309	0.2742	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	0.71	0.83	0.7051	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	SLC20A2--NECAB1	15	55	SLC20A2	2012	chr8:42396058:-	NECAB1	33977	chr8:91929720:+	ONLY_REF_SPLICE	YES	65	1	0.52	0.99	0.1959	0.7182	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,NECAB1->N-terminal_EF-hand_calcium_binding_protein_1,chr8:91803778-91971636:+	JHUEM3_ENDOMETRIUM	0.52	0.99	0.9141	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	20	23	GRB10	12649	chr7:50799969:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	YES	20	22	0.68	0.66	0.2612	0.3003	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	0.66	0.68	0.5615	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	10	32	GRB10	16627	chr7:50793710:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	YES	18	22	0.7	0.66	0.1306	0.4179	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	0.66	0.7	0.5485	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM49B--SULF1	14	7	FAM49B	1760	chr8:131028616:-	SULF1	35260	chr8:70408000:+	ONLY_REF_SPLICE	YES	0	12	1	0.64	0.1828	0.0914	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,SULF1->chr8:70378859-70573150:+,sulfatase_1	JHUEM3_ENDOMETRIUM	0.64	1	0.2742	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	LAMA2--TUSC3	13	8	LAMA2	33536	chr6:129663612:+	TUSC3	83236	chr8:15517016:+	ONLY_REF_SPLICE	YES	1	110	0.95	0.16	0.1698	0.1045	LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2,TUSC3->chr8:15274724-15624158:+,tumor_suppressor_candidate_3	JHUEM3_ENDOMETRIUM	0.16	0.95	0.2743	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	HDGFRP2--DDX19B	8	27	HDGFRP2	1136	chr19:4472419:+	DDX19B	22599	chr16:70348805:+	ONLY_REF_SPLICE	YES	28	63	0.56	0.36	0.1045	0.3526	HDGFRP2->chr19:4472284-4502223:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	JHUEM3_ENDOMETRIUM	0.36	0.56	0.4571	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	SLC20A2--NECAB1	2	51	SLC20A2	1475	chr8:42396595:-	NECAB1	33977	chr8:91929720:+	ONLY_REF_SPLICE	YES	56	1	0.49	0.98	0.0261	0.666	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,NECAB1->N-terminal_EF-hand_calcium_binding_protein_1,chr8:91803778-91971636:+	JHUEM3_ENDOMETRIUM	0.49	0.98	0.6921	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	PAK1--AAMDC	13	1	PAK1	2084	chr11:77184597:-	AAMDC	43610	chr11:77629107:+	ONLY_REF_SPLICE	YES	58	7	0.19	0.67	0.1698	0.0131	PAK1->Oncogene{Bushman},chr11:77032752-77185680:-,p21_(RAC1)_activated_kinase_1,AAMDC->adipogenesis_associated,_Mth938_domain_containing,chr11:77532155-77629478:+	JHUEM3_ENDOMETRIUM	0.19	0.67	0.1829	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	INTS4--DKFZP434E1119	12	1	INTS4	20592	chr11:77629107:-	DKFZP434E1119	33470	chr11:77184597:+	INCL_NON_REF_SPLICE	YES	272	1	0.05	0.93	0.1567	0.0131	INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,DKFZP434E1119->chr11:77184416-77188074:+	JHUEM3_ENDOMETRIUM	0.05	0.93	0.1698	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM110B--FAM49B	9	4	FAM110B	5782	chr8:58988182:+	FAM49B	40472	chr8:130859120:-	ONLY_REF_SPLICE	YES	7	167	0.65	0.07	0.1175	0.0522	FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	JHUEM3_ENDOMETRIUM	0.07	0.65	0.1697	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	SLC20A2--NECAB1	10	0	SLC20A2	1067	chr8:42397003:-	NECAB1	33977	chr8:91929720:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1306	0	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,NECAB1->N-terminal_EF-hand_calcium_binding_protein_1,chr8:91803778-91971636:+	JHUEM3_ENDOMETRIUM	1	1	0.1306	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	TUSC3--LAMA2	8	5	TUSC3	5774	chr8:15480758:+	LAMA2	40687	chr6:129581856:+	ONLY_REF_SPLICE	YES	89	0	0.13	1	0.1045	0.0653	TUSC3->chr8:15274724-15624158:+,tumor_suppressor_candidate_3,LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2	JHUEM3_ENDOMETRIUM	0.13	1	0.1698	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MED30--NCALD	4	20	MED30	1341	chr8:118533292:+	NCALD	24532	chr8:102792207:-	ONLY_REF_SPLICE	YES	58	8	0.29	0.75	0.0522	0.2612	MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30,NCALD->chr8:102698771-103137135:-,neurocalcin_delta	JHUEM3_ENDOMETRIUM	0.29	0.75	0.3134	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CASC9--RP11-300E4.2	8	1	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	13	0	0.41	1	0.1045	0.0131	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	JHUEM3_ENDOMETRIUM	0.41	1	0.1176	TRUE	0	12	0	10	12	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CHD7--MED30	8	1	CHD7	6284	chr8:61693989:+	MED30	47694	chr8:118552122:+	ONLY_REF_SPLICE	YES	4	86	0.69	0.09	0.1045	0.0131	CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7,MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30	JHUEM3_ENDOMETRIUM	0.09	0.69	0.1176	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	1	29	GRB10	15728	chr7:50794609:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	YES	18	22	0.62	0.58	0.0131	0.3787	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	0.58	0.62	0.3918	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	1	25	GRB10	14847	chr7:50795490:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	NO	20	22	0.57	0.54	0.0131	0.3265	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	0.54	0.57	0.3396	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CASC9--RP11-300E4.2	6	4	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	14	0	0.42	1	0.0784	0.0522	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	JHUEM3_ENDOMETRIUM	0.42	1	0.1306	TRUE	0	23	0	19	23	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM49B--SULF1	7	0	FAM49B	1523	chr8:131028853:-	SULF1	36422	chr8:70414109:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0914	0	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,SULF1->chr8:70378859-70573150:+,sulfatase_1	JHUEM3_ENDOMETRIUM	1	1	0.0914	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM49B--NKAIN3	3	14	FAM49B	14700	chr8:130883621:-	NKAIN3	31750	chr8:63492098:+	ONLY_REF_SPLICE	YES	154	0	0.1	1	0.0392	0.1828	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,NKAIN3->Na+/K+_transporting_ATPase_interacting_3,chr8:63161150-63912211:+	JHUEM3_ENDOMETRIUM	0.1	1	0.222	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MED30--NCALD	1	19	MED30	1341	chr8:118533292:+	NCALD	27271	chr8:102758221:-	ONLY_REF_SPLICE	YES	58	7	0.26	0.74	0.0131	0.2481	MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30,NCALD->chr8:102698771-103137135:-,neurocalcin_delta	JHUEM3_ENDOMETRIUM	0.26	0.74	0.2612	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	PRKDC--RP11-388G22.1	5	3	PRKDC	75800	chr8:48701467:-	RP11-388G22.1	91018	chr8:58507021:-	ONLY_REF_SPLICE	YES	163	0	0.05	1	0.0653	0.0392	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,RP11-388G22.1->chr8:58506725-58717588:-	JHUEM3_ENDOMETRIUM	0.05	1	0.1045	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	ZNF250--PVT1	4	3	ZNF250	13108	chr8:146101922:-	PVT1	34328	chr8:129001408:+	ONLY_REF_SPLICE	YES	2	22	0.78	0.24	0.0522	0.0392	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	JHUEM3_ENDOMETRIUM	0.24	0.78	0.0914	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CA8--FAM110B	4	2	CA8	2557	chr8:61192248:-	FAM110B	29740	chr8:59110390:+	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0522	0.0261	CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-,FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B	JHUEM3_ENDOMETRIUM	0.38	1	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	TRAM1--RP11-573J24.1	4	0	TRAM1	10505	chr8:71495399:-	RP11-573J24.1	18214	chr8:64501381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	TRAM1->chr8:71485677-71520622:-,translocation_associated_membrane_protein_1,RP11-573J24.1->chr8:64498558-64501966:+	JHUEM3_ENDOMETRIUM	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CA8--FAM110B	3	2	CA8	2557	chr8:61192248:-	FAM110B	28641	chr8:59101877:+	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0392	0.0261	CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-,FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B	JHUEM3_ENDOMETRIUM	0.33	1	0.0653	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM49B--NKAIN3	2	6	FAM49B	8896	chr8:130915558:-	NKAIN3	31750	chr8:63492098:+	ONLY_REF_SPLICE	YES	156	0	0.05	1	0.0261	0.0784	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,NKAIN3->Na+/K+_transporting_ATPase_interacting_3,chr8:63161150-63912211:+	JHUEM3_ENDOMETRIUM	0.05	1	0.1045	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	AMN1--ITPR2	3	1	AMN1	9564	chr12:31841941:-	ITPR2	17402	chr12:26943160:-	ONLY_REF_SPLICE	YES	7	9	0.36	0.31	0.0392	0.0131	AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	JHUEM3_ENDOMETRIUM	0.31	0.36	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CA8--FAM110B	3	1	CA8	2557	chr8:61192248:-	FAM110B	31067	chr8:59116074:+	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0392	0.0131	CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-,FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B	JHUEM3_ENDOMETRIUM	0.29	1	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CHD7--MED30	3	0	CHD7	4853	chr8:61655656:+	MED30	44975	chr8:118540890:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7,MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30	JHUEM3_ENDOMETRIUM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	3	0	GRB10	1239	chr7:50860921:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	ZNF250--PVT1	2	4	ZNF250	13108	chr8:146101922:-	PVT1	33027	chr8:128996150:+	ONLY_REF_SPLICE	YES	2	20	0.75	0.23	0.0261	0.0522	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	JHUEM3_ENDOMETRIUM	0.23	0.75	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CA8--FAM110B	2	3	CA8	1365	chr8:61193607:-	FAM110B	24759	chr8:59058466:+	ONLY_REF_SPLICE	YES	21	5	0.19	0.5	0.0261	0.0392	CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-,FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B	JHUEM3_ENDOMETRIUM	0.19	0.5	0.0653	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-59N23.3--CMAS	2	3	RP11-59N23.3	1459	chr12:21815705:+	CMAS	6999	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	69	1	0.07	0.0261	0.0392	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	JHUEM3_ENDOMETRIUM	0.07	1	0.0653	TRUE	0	14	5	5	10	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	GNAI2--NT5DC2	2	0	GNAI2	7094	chr3:50273885:+	NT5DC2	24024	chr3:52563350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+,NT5DC2->5'-nucleotidase_domain_containing_2,chr3:52558386-52569070:-	JHUEM3_ENDOMETRIUM	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	GTF2A2--ANXA2	2	0	GTF2A2	1136	chr15:59949605:-	ANXA2	28017	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTF2A2->chr15:59930261-59949740:-,general_transcription_factor_IIA_subunit_2,ANXA2->annexin_A2,chr15:60639333-60695082:-	JHUEM3_ENDOMETRIUM	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	RNF144B--DCDC2	2	0	RNF144B	2552	chr6:18387861:+	DCDC2	24966	chr6:24278439:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	RNF144B->chr6:18368779-18469105:+,ring_finger_protein_144B,DCDC2->chr6:24171984-24358280:-,doublecortin_domain_containing_2	JHUEM3_ENDOMETRIUM	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	RPS4X--COL6A3	2	0	RPS4X	5069	chrX:71493082:-	COL6A3	39920	chr2:238262046:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	RPS4X->chrX:71475529-71497150:-,ribosomal_protein_S4,_X-linked,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	JHUEM3_ENDOMETRIUM	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	TUSC3--LAMA2	1	4	TUSC3	5774	chr8:15480758:+	LAMA2	41799	chr6:129588251:+	ONLY_REF_SPLICE	YES	89	1	0.05	0.83	0.0131	0.0522	TUSC3->chr8:15274724-15624158:+,tumor_suppressor_candidate_3,LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2	JHUEM3_ENDOMETRIUM	0.05	0.83	0.0653	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	1	1	GRB10	6797	chr7:50846832:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	NO	2	22	0.5	0.08	0.0131	0.0131	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	0.08	0.5	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000173
SNGM_ENDOMETRIUM	CCDC142--TMEM205	2	0	CCDC142	3640	chr2:74707896:-	TMEM205	12272	chr19:11456304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CCDC142->chr2:74699113-74710535:-,coiled-coil_domain_containing_142,TMEM205->chr19:11453452-11457194:-,transmembrane_protein_205	SNGM_ENDOMETRIUM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000974
SNGM_ENDOMETRIUM	FBXL8--SLC3A2	2	0	FBXL8	2944	chr16:67195840:+	SLC3A2	15421	chr11:62650380:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	FBXL8->F-box_and_leucine-rich_repeat_protein_8,chr16:67193834-67198473:+,SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2	SNGM_ENDOMETRIUM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000974
SNGM_ENDOMETRIUM	RP11-89K10.1--PCAT1	2	0	RP11-89K10.1	2156	chr8:127601535:+	PCAT1	14438	chr8:127889917:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	RP11-89K10.1->chr8:127570120-127725660:+,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	SNGM_ENDOMETRIUM	1	1	0.0262	TRUE	0	4	0	4	4	TRUE	ACH-000974
SNGM_ENDOMETRIUM	TATDN1--GSDMB	2	0	TATDN1	1434	chr8:125551266:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SNGM_ENDOMETRIUM	1	1	0.0262	TRUE	0	1	0	3	1	TRUE	ACH-000974
SNGM_ENDOMETRIUM	TCEB1--STAU2	2	0	TCEB1	1211	chr8:74884312:-	STAU2	33997	chr8:74516098:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	TCEB1->chr8:74851404-74884522:-,transcription_elongation_factor_B_subunit_1,STAU2->chr8:74332604-74659943:-,staufen_double-stranded_RNA_binding_protein_2	SNGM_ENDOMETRIUM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000974
SNGM_ENDOMETRIUM	RP11-467J12.4--CASC16	1	2	RP11-467J12.4	2192	chr16:53081117:-	CASC16	7619	chr16:52682024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0.0262	RP11-467J12.4->chr16:53069602-53086785:-,CASC16->cancer_susceptibility_candidate_16_(non-protein_coding),chr16:52586002-52686017:-	SNGM_ENDOMETRIUM	1	1	0.0393	TRUE	0	6	0	3	6	TRUE	ACH-000974
KYSE520_OESOPHAGUS	CSE1L--ARFGEF2	232	133	CSE1L	19051	chr20:47707559:+	ARFGEF2	59036	chr20:47639588:+	ONLY_REF_SPLICE	YES	293	74	0.55	0.83	3.0853	1.7688	YOSHIHARA_TCGA_num_samples[BRCA:1|KIRC:1],{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[9619],CSE1L->Oncogene{Bushman},chr20:47662849-47713489:+,chromosome_segregation_1_like,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	KYSE520_OESOPHAGUS	0.55	0.83	4.8541	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CABIN1--VSTM2A	209	87	CABIN1	13521	chr22:24456604:+	VSTM2A	54701	chr7:54614640:+	ONLY_REF_SPLICE	YES	119	0	0.71	1	2.7795	1.157	{Klijn_CCL:Head-Neck=1},CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+,VSTM2A->V-set_and_transmembrane_domain_containing_2A,chr7:54610018-54638773:+	KYSE520_OESOPHAGUS	0.71	1	3.9365	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	192	114	CCT6A	1856	chr7:56120178:+	PSPH	16247	chr7:56110954:-	ONLY_REF_SPLICE	YES	1490	455	0.17	0.4	2.5534	1.5161	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0.17	0.4	4.0695	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	PGS1--KRT17P2	107	52	PGS1	4628	chr17:76388746:+	KRT17P2	22324	chr17:18332236:+	ONLY_REF_SPLICE	YES	18	0	0.9	1	1.423	0.6915	PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1,KRT17P2->chr17:18330175-18335162:+,keratin_17_pseudogene_2	KYSE520_OESOPHAGUS	0.9	1	2.1145	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	AKT3--CEP170	82	40	AKT3	22413	chr1:243736228:-	CEP170	63272	chr1:243299533:-	ONLY_REF_SPLICE	YES	46	36	0.73	0.77	1.0905	0.532	{Klijn_CCL:Head-Neck=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	KYSE520_OESOPHAGUS	0.73	0.77	1.6225	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	69	66	CCT6A	1856	chr7:56120178:+	PSPH	17379	chr7:56101847:-	ONLY_REF_SPLICE	YES	1490	431	0.08	0.24	0.9176	0.8777	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0.08	0.24	1.7953	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	PITPNA--SLC43A2	74	5	PITPNA	4632	chr17:1461823:-	SLC43A2	29457	chr17:1496573:-	ONLY_REF_SPLICE	YES	20	26	0.8	0.75	0.9841	0.0665	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[6451],PITPNA->chr17:1421012-1466110:-,phosphatidylinositol_transfer_protein_alpha,SLC43A2->chr17:1472561-1532180:-,solute_carrier_family_43_member_2	KYSE520_OESOPHAGUS	0.75	0.8	1.0506	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MTMR4--SEPT4	62	20	MTMR4	5314	chr17:56590213:-	SEPT4	31582	chr17:56603674:-	ONLY_REF_SPLICE	YES	14	21	0.85	0.8	0.8245	0.266	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[2345],MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,SEPT4->chr17:56597611-56618179:-,septin_4	KYSE520_OESOPHAGUS	0.8	0.85	1.0905	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	SS18L1--MYH15	41	22	SS18L1	1124	chr20:60718945:+	MYH15	31439	chr3:108195362:-	ONLY_REF_SPLICE	YES	27	0	0.7	1	0.5453	0.2926	SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,MYH15->chr3:108099216-108248169:-,myosin,_heavy_chain_15	KYSE520_OESOPHAGUS	0.7	1	0.8379	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	TNS3--INTS1	39	18	TNS3	8632	chr7:47546505:-	INTS1	68057	chr7:1522343:-	ONLY_REF_SPLICE	YES	121	81	0.32	0.41	0.5187	0.2394	TNS3->chr7:47314752-47622156:-,tensin_3,INTS1->chr7:1509913-1545489:-,integrator_complex_subunit_1	KYSE520_OESOPHAGUS	0.32	0.41	0.7581	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CUX1--GINS3	35	19	CUX1	10206	chr7:101671425:+	GINS3	63070	chr16:58420525:+	ONLY_REF_SPLICE	YES	152	1	0.26	0.98	0.4655	0.2527	{Klijn_CCL:Head-Neck=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	KYSE520_OESOPHAGUS	0.26	0.98	0.7182	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	25	57	CCT6A	1856	chr7:56120178:+	PSPH	17427	chr7:56101799:-	ONLY_REF_SPLICE	YES	1490	435	0.05	0.16	0.3325	0.758	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0.05	0.16	1.0905	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	22	57	CCT6A	1856	chr7:56120178:+	PSPH	17430	chr7:56101796:-	ONLY_REF_SPLICE	YES	1490	426	0.05	0.16	0.2926	0.758	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0.05	0.16	1.0506	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	SH3PXD2A--OBFC1	30	4	SH3PXD2A	1349	chr10:105614953:-	OBFC1	35985	chr10:105670380:-	ONLY_REF_SPLICE	YES	1	35	0.97	0.49	0.399	0.0532	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:2|LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[26999],SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-,OBFC1->chr10:105642300-105677963:-,oligonucleotide/oligosaccharide_binding_fold_containing_1	KYSE520_OESOPHAGUS	0.49	0.97	0.4522	TRUE	0	3	0	1	2	TRUE	ACH-000637
KYSE520_OESOPHAGUS	TUBGCP3--HCN1	26	12	TUBGCP3	1263	chr13:113242219:-	HCN1	30885	chr5:45645710:-	ONLY_REF_SPLICE	YES	17	0	0.69	1	0.3458	0.1596	TUBGCP3->chr13:113139325-113242481:-,tubulin_gamma_complex_associated_protein_3,HCN1->chr5:45259349-45696253:-,hyperpolarization_activated_cyclic_nucleotide_gated_potassium_channel_1	KYSE520_OESOPHAGUS	0.69	1	0.5054	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MTMR4--SEPT4	21	25	MTMR4	5314	chr17:56590213:-	SEPT4	30917	chr17:56604339:-	ONLY_REF_SPLICE	YES	14	2	0.77	0.96	0.2793	0.3325	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[2345],MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,SEPT4->chr17:56597611-56618179:-,septin_4	KYSE520_OESOPHAGUS	0.77	0.96	0.6118	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CSE1L--ARFGEF2	1	49	CSE1L	19051	chr20:47707559:+	ARFGEF2	60167	chr20:47641850:+	ONLY_REF_SPLICE	YES	293	144	0.15	0.26	0.0133	0.6516	YOSHIHARA_TCGA_num_samples[BRCA:1|KIRC:1],{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[9619],CSE1L->Oncogene{Bushman},chr20:47662849-47713489:+,chromosome_segregation_1_like,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	KYSE520_OESOPHAGUS	0.15	0.26	0.6649	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	AC004158.2--WDR59	10	0	AC004158.2	1118	chr16:72698791:-	WDR59	46043	chr16:74927710:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.133	0	AC004158.2->chr16:72459384-72698908:-,WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-	KYSE520_OESOPHAGUS	1	1	0.133	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CDC42EP3--AC012457.2	8	3	CDC42EP3	9658	chr2:37898569:-	AC012457.2	20666	chr2:25431843:+	ONLY_REF_SPLICE	YES	33	0	0.25	1	0.1064	0.0399	CDC42EP3->CDC42_effector_protein_3,chr2:37869032-37965611:-,AC012457.2->chr2:25427182-25432071:+	KYSE520_OESOPHAGUS	0.25	1	0.1463	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MTMR4--SEPT4	3	20	MTMR4	5314	chr17:56590213:-	SEPT4	31485	chr17:56603771:-	ONLY_REF_SPLICE	YES	14	20	0.62	0.53	0.0399	0.266	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[2345],MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,SEPT4->chr17:56597611-56618179:-,septin_4	KYSE520_OESOPHAGUS	0.53	0.62	0.3059	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	HIP1--MIB2	7	3	HIP1	1162	chr7:75368119:-	MIB2	49250	chr1:1563653:+	ONLY_REF_SPLICE	YES	3	144	0.77	0.06	0.0931	0.0399	HIP1->Oncogene{Bushman},chr7:75162621-75368280:-,huntingtin_interacting_protein_1,MIB2->Oncogene{Bushman},chr1:1550795-1565990:+,mindbomb_E3_ubiquitin_protein_ligase_2	KYSE520_OESOPHAGUS	0.06	0.77	0.133	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MTMR4--SEPT4	5	1	MTMR4	2128	chr17:56593941:-	SEPT4	31582	chr17:56603674:-	ONLY_REF_SPLICE	YES	1	21	0.86	0.22	0.0665	0.0133	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[2345],MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,SEPT4->chr17:56597611-56618179:-,septin_4	KYSE520_OESOPHAGUS	0.22	0.86	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MTMR4--SEPT4	4	2	MTMR4	3849	chr17:56591724:-	SEPT4	31582	chr17:56603674:-	ONLY_REF_SPLICE	YES	6	21	0.5	0.22	0.0532	0.0266	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[2345],MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,SEPT4->chr17:56597611-56618179:-,septin_4	KYSE520_OESOPHAGUS	0.22	0.5	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MTMR4--SEPT4	4	1	MTMR4	2128	chr17:56593941:-	SEPT4	30917	chr17:56604339:-	ONLY_REF_SPLICE	YES	1	2	0.83	0.71	0.0532	0.0133	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[2345],MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,SEPT4->chr17:56597611-56618179:-,septin_4	KYSE520_OESOPHAGUS	0.71	0.83	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	SS18L1--MYH15	1	12	SS18L1	1124	chr20:60718945:+	MYH15	32558	chr3:108189694:-	ONLY_REF_SPLICE	YES	27	2	0.33	0.87	0.0133	0.1596	SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,MYH15->chr3:108099216-108248169:-,myosin,_heavy_chain_15	KYSE520_OESOPHAGUS	0.33	0.87	0.1729	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	HIP1--MIB2	3	2	HIP1	1162	chr7:75368119:-	MIB2	49466	chr1:1563869:+	ONLY_REF_SPLICE	YES	3	120	0.62	0.04	0.0399	0.0266	HIP1->Oncogene{Bushman},chr7:75162621-75368280:-,huntingtin_interacting_protein_1,MIB2->Oncogene{Bushman},chr1:1550795-1565990:+,mindbomb_E3_ubiquitin_protein_ligase_2	KYSE520_OESOPHAGUS	0.04	0.62	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	NQO1--UBB	3	0	NQO1	2684	chr16:69752273:-	UBB	13620	chr17:16285361:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	KYSE520_OESOPHAGUS	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	SS18L1--MYH15	2	4	SS18L1	1124	chr20:60718945:+	MYH15	34364	chr3:108183661:-	ONLY_REF_SPLICE	YES	27	23	0.18	0.21	0.0266	0.0532	SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,MYH15->chr3:108099216-108248169:-,myosin,_heavy_chain_15	KYSE520_OESOPHAGUS	0.18	0.21	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	ANO7--FARP2	2	2	ANO7	20467	chr2:242157796:+	FARP2	51409	chr2:242396162:+	ONLY_REF_SPLICE	YES	0	19	1	0.17	0.0266	0.0266	ANO7->anoctamin_7,chr2:242127924-242164792:+,FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+	KYSE520_OESOPHAGUS	0.17	1	0.0532	TRUE	0	0	0	2	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	ARHGAP29--ENOSF1	2	0	ARHGAP29	27533	chr1:94640160:-	ENOSF1	38722	chr18:706578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-,ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	C17orf76-AS1--RPS3	2	0	C17orf76-AS1	1593	chr17:16342728:+	RPS3	18389	chr11:75115716:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	C17orf76-AS1->chr17:16342136-16381992:+,RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CSNK1G1--TMCC1	2	0	CSNK1G1	2661	chr15:64592518:-	TMCC1	26549	chr3:129599402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	CSNK1G1->casein_kinase_1_gamma_1,chr15:64457716-64648442:-,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CUX1--GINS3	2	0	CUX1	10206	chr7:101671425:+	GINS3	69938	chr16:58438403:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	{Klijn_CCL:Head-Neck=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	DUSP22--SET	2	0	DUSP22	13386	chr6:348841:+	SET	23560	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	DUSP22->chr6:291630-351355:+,dual_specificity_phosphatase_22,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MBTD1--SRSF4	2	0	MBTD1	17118	chr17:49269564:-	SRSF4	26351	chr1:29495150:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1,SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MGST1--RPS27A	2	0	MGST1	5873	chr12:16507204:+	RPS27A	25404	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	2	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	NQO1--UBB	2	0	NQO1	2684	chr16:69752273:-	UBB	13475	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	SH3PXD2A--OBFC1	1	4	SH3PXD2A	1349	chr10:105614953:-	OBFC1	37081	chr10:105664914:-	ONLY_REF_SPLICE	YES	1	39	0.83	0.11	0.0133	0.0532	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:2|LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[26999],SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-,OBFC1->chr10:105642300-105677963:-,oligonucleotide/oligosaccharide_binding_fold_containing_1	KYSE520_OESOPHAGUS	0.11	0.83	0.0665	TRUE	0	4	0	1	2	TRUE	ACH-000637
KYSE520_OESOPHAGUS	TMPRSS5--STK39	2	0	TMPRSS5	10673	chr11:113560487:-	STK39	26744	chr2:168931741:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	TMPRSS5->chr11:113558272-113577095:-,transmembrane_protease,_serine_5,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	NUP155--CTC-313D10.1	1	3	NUP155	27954	chr5:37304841:-	CTC-313D10.1	44091	chr5:113915002:+	ONLY_REF_SPLICE	YES	31	0	0.11	1	0.0133	0.0399	NUP155->chr5:37288239-37371283:-,nucleoporin_155kDa,CTC-313D10.1->chr5:113911738-113915667:+	KYSE520_OESOPHAGUS	0.11	1	0.0532	TRUE	0	0	0	1	0	TRUE	ACH-000637
HS172T_FIBROBLAST	CHPT1--EEA1	2	0	CHPT1	5260	chr12:102110590:+	EEA1	42600	chr12:93202932:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	CHPT1->choline_phosphotransferase_1,chr12:102090725-102137918:+,EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1	HS172T_FIBROBLAST	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000088
HCC827_LUNG	RASSF3--FRG1B	1059	86	RASSF3	1231	chr12:65004523:+	FRG1B	15672	chr20:29623129:+	ONLY_REF_SPLICE	YES	5	46	1	0.96	10.4306	0.8471	RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+,FRG1B->chr20:29611857-29634010:+	HCC827_LUNG	0.96	1	11.2777	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	KIAA1429--RP11-586K2.1	210	68	KIAA1429	2261	chr8:95556055:-	RP11-586K2.1	37940	chr8:89712521:+	ONLY_REF_SPLICE	YES	40	0	0.87	1	2.0684	0.6698	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827_LUNG	0.87	1	2.7382	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	TBK1--RP11-338E21.1	150	29	TBK1	6330	chr12:64860862:+	RP11-338E21.1	24507	chr12:64992996:-	ONLY_REF_SPLICE	YES	448	0	0.29	1	1.4774	0.2856	LOCAL_INVERSION:+:-:[96970],TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,RP11-338E21.1->chr12:64992858-65003239:-	HCC827_LUNG	0.29	1	1.763	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	ST3GAL1--RP11-103H7.2	44	13	ST3GAL1	12845	chr8:134487962:-	RP11-103H7.2	27477	chr8:127512122:+	ONLY_REF_SPLICE	YES	6	0	0.9	1	0.4334	0.128	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,RP11-103H7.2->chr8:127510394-127512548:+	HCC827_LUNG	0.9	1	0.5614	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	JPH1--NCOA2	40	11	JPH1	3180	chr8:75227096:-	NCOA2	15431	chr8:71209035:-	ONLY_REF_SPLICE	YES	106	4	0.32	0.93	0.394	0.1083	JPH1->chr8:75146935-75233563:-,junctophilin_1,NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2	HCC827_LUNG	0.32	0.93	0.5023	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	TBK1--RP11-338E21.1	21	33	TBK1	6330	chr12:64860862:+	RP11-338E21.1	24489	chr12:64993014:-	INCL_NON_REF_SPLICE	YES	448	0	0.11	1	0.2068	0.325	LOCAL_INVERSION:+:-:[96970],TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,RP11-338E21.1->chr12:64992858-65003239:-	HCC827_LUNG	0.11	1	0.5318	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	ZSWIM4--RFX1	16	9	ZSWIM4	6454	chr19:13923978:+	RFX1	24652	chr19:14094407:-	ONLY_REF_SPLICE	YES	8	10	0.76	0.71	0.1576	0.0886	{Klijn_CCL:Lung=1},ZSWIM4->chr19:13906274-13943044:+,zinc_finger_SWIM-type_containing_4,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	HCC827_LUNG	0.71	0.76	0.2462	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	TMEM9B--TMEM41B	17	3	TMEM9B	7711	chr11:8969849:-	TMEM41B	14298	chr11:9316934:-	INCL_NON_REF_SPLICE	YES	52	48	0.28	0.29	0.1674	0.0295	TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,TMEM41B->chr11:9302201-9336327:-,transmembrane_protein_41B	HCC827_LUNG	0.28	0.29	0.1969	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	ICAM5--ANO8	12	5	ICAM5	3886	chr19:10403542:+	ANO8	11828	chr19:17444609:-	ONLY_REF_SPLICE	YES	12	8	0.59	0.68	0.1182	0.0492	{Klijn_CCL:Lung=1},ICAM5->Oncogene{Bushman},chr19:10400657-10407454:+,intercellular_adhesion_molecule_5,ANO8->anoctamin_8,chr19:17434032-17445638:-	HCC827_LUNG	0.59	0.68	0.1674	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	ARFGEF1--SGK3	11	3	ARFGEF1	22076	chr8:68150578:-	SGK3	53454	chr8:67705851:+	ONLY_REF_SPLICE	YES	72	5	0.16	0.74	0.1083	0.0295	ARFGEF1->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_1,chr8:68085747-68255912:-,SGK3->chr8:67624653-67774257:+,serum/glucocorticoid_regulated_kinase_family_member_3	HCC827_LUNG	0.16	0.74	0.1378	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	KIAA1429--RP11-586K2.1	4	21	KIAA1429	2261	chr8:95556055:-	RP11-586K2.1	38998	chr8:89721559:+	ONLY_REF_SPLICE	YES	40	0	0.38	1	0.0394	0.2068	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827_LUNG	0.38	1	0.2462	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	PFN1--CTD-2192J16.15	9	0	PFN1	1760	chr17:4851597:-	CTD-2192J16.15	7412	chr19:12754732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0886	0	PFN1->Oncogene{Bushman},chr17:4848947-4852356:-,profilin_1,CTD-2192J16.15->chr19:12754089-12754733:-	HCC827_LUNG	1	1	0.0886	TRUE	0	0	0	1	0	TRUE	ACH-000012
HCC827_LUNG	KIAA1429--RP11-586K2.1	4	7	KIAA1429	2261	chr8:95556055:-	RP11-586K2.1	40396	chr8:89747954:+	ONLY_REF_SPLICE	YES	40	0	0.22	1	0.0394	0.0689	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827_LUNG	0.22	1	0.1083	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	KB-1047C11.2--SULF1	4	0	KB-1047C11.2	2912	chr8:96281118:+	SULF1	38101	chr8:70539445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	KB-1047C11.2->chr8:96216684-96822364:+,SULF1->chr8:70378859-70573150:+,sulfatase_1	HCC827_LUNG	1	1	0.0394	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	ZSWIM4--RFX1	3	3	ZSWIM4	5286	chr19:13920034:+	RFX1	24652	chr19:14094407:-	ONLY_REF_SPLICE	YES	22	10	0.21	0.38	0.0295	0.0295	{Klijn_CCL:Lung=1},ZSWIM4->chr19:13906274-13943044:+,zinc_finger_SWIM-type_containing_4,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	HCC827_LUNG	0.21	0.38	0.059	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	JPH1--NCOA2	3	0	JPH1	1420	chr8:75233144:-	NCOA2	15431	chr8:71209035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	JPH1->chr8:75146935-75233563:-,junctophilin_1,NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2	HCC827_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000012
HCC827_LUNG	KRT7--TUBA1C	3	0	KRT7	1809	chr12:52627112:+	TUBA1C	26832	chr12:49666110:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	KRT7->chr12:52626304-52645970:+,keratin_7,TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c	HCC827_LUNG	1	1	0.0295	TRUE	0	0	0	4	0	TRUE	ACH-000012
HCC827_LUNG	KRT7--TUBA1C	3	0	KRT7	6745	chr12:52635420:+	TUBA1C	27565	chr12:49666843:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	KRT7->chr12:52626304-52645970:+,keratin_7,TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c	HCC827_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000012
HCC827_LUNG	TATDN1--DEPTOR	3	0	TATDN1	8556	chr8:125527987:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	HCC827_LUNG	1	1	0.0295	TRUE	0	0	0	6	0	TRUE	ACH-000012
HCC827_LUNG	ZNF107--LNX1	2	1	ZNF107	7065	chr7:64152338:+	LNX1	17927	chr4:54540635:-	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0197	0.0098	ZNF107->chr7:64126511-64171404:+,zinc_finger_protein_107,LNX1->chr4:54325468-54567572:-,ligand_of_numb-protein_X_1	HCC827_LUNG	0.16	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000012
HCC827_LUNG	FCHO1--ABCA4	2	0	FCHO1	10532	chr19:17877619:+	ABCA4	56572	chr1:94505683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	HCC827_LUNG	1	1	0.0197	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	MSN--ACTN4	2	0	MSN	18292	chrX:64958479:+	ACTN4	33960	chr19:39205109:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	MSN->Oncogene{Bushman},chrX:64808257-64961791:+,moesin,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	HCC827_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000012
HCC827_LUNG	SGK3--COPS5	1	4	SGK3	3963	chr8:67687554:+	COPS5	30061	chr8:67981438:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0098	0.0394	SGK3->chr8:67624653-67774257:+,serum/glucocorticoid_regulated_kinase_family_member_3,COPS5->COP9_signalosome_subunit_5,chr8:67955314-67996018:-	HCC827_LUNG	0.56	1	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000012
HCC827_LUNG	KIAA1429--RP11-586K2.1	1	1	KIAA1429	1145	chr8:95565613:-	RP11-586K2.1	37940	chr8:89712521:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0098	0.0098	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827_LUNG	0.5	1	0.0196	TRUE	0	0	0	2	0	TRUE	ACH-000012
8305C_THYROID	SAMD5--SASH1	13	1	SAMD5	1461	chr6:147830523:+	SASH1	22535	chr6:148835460:+	ONLY_REF_SPLICE	YES	6	10	0.7	0.58	0.1553	0.0119	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	8305C_THYROID	0.58	0.7	0.1672	TRUE	0	0	0	2	0	TRUE	ACH-001306
8305C_THYROID	CUX1--GTF2I	11	6	CUX1	13547	chr7:101747739:+	GTF2I	73181	chr7:74143124:+	ONLY_REF_SPLICE	YES	75	113	0.18	0.13	0.1314	0.0717	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi	8305C_THYROID	0.13	0.18	0.2031	TRUE	0	0	0	1	0	TRUE	ACH-001306
8305C_THYROID	AHCY--RP11-317N12.1	2	1	AHCY	2446	chr20:32891049:-	RP11-317N12.1	22986	chr8:33895881:+	ONLY_REF_SPLICE	YES	54	8	0.05	0.27	0.0239	0.0119	AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-,RP11-317N12.1->chr8:33462374-33896526:+	8305C_THYROID	0.05	0.27	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-001306
8305C_THYROID	NCK2--C2orf40	2	0	NCK2	5567	chr2:106471745:+	C2orf40	16942	chr2:106688300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+,C2orf40->chr2:106679702-106694615:+,chromosome_2_open_reading_frame_40	8305C_THYROID	1	1	0.0239	TRUE	1	2	0	1	2	TRUE	ACH-001306
8305C_THYROID	RNF122--PIGU	2	0	RNF122	1427	chr8:33424217:-	PIGU	17914	chr20:33176411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	RNF122->chr8:33405273-33424643:-,ring_finger_protein_122,PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U	8305C_THYROID	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-001306
HCT15_LARGE_INTESTINE	CCAT1--CASC8	60	59	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.7089	0.6971	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCT15_LARGE_INTESTINE	0.99	1	1.406	TRUE	0	26	0	18	24	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MGRN1--C16orf96	63	41	MGRN1	2342	chr16:4675049:+	C16orf96	30423	chr16:4621562:+	ONLY_REF_SPLICE	YES	64	0	0.62	1	0.7443	0.4844	LOCAL_REARRANGEMENT:+:[15779],MGRN1->chr16:4666494-4740975:+,mahogunin_ring_finger_1,C16orf96->chr16:4606491-4650715:+,chromosome_16_open_reading_frame_96	HCT15_LARGE_INTESTINE	0.62	1	1.2287	TRUE	0	1	0	1	1	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	GGA3--NUP85	59	35	GGA3	5372	chr17:73240700:-	NUP85	24993	chr17:73221198:+	ONLY_REF_SPLICE	YES	70	125	0.57	0.43	0.6971	0.4135	LOCAL_INVERSION:-:+:[841],GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3,NUP85->chr17:73201754-73231853:+,nucleoporin_85	HCT15_LARGE_INTESTINE	0.43	0.57	1.1106	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	NT5DC1--FRK	48	38	NT5DC1	6611	chr6:116439108:+	FRK	26838	chr6:116289902:-	ONLY_REF_SPLICE	YES	71	6	0.55	0.93	0.5671	0.449	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:+:-:[40091],NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+,FRK->chr6:116252312-116381921:-,fyn_related_Src_family_tyrosine_kinase	HCT15_LARGE_INTESTINE	0.55	0.93	1.0161	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	FRK--NT5DC1	43	25	FRK	6190	chr6:116288714:-	NT5DC1	32385	chr6:116542217:+	ONLY_REF_SPLICE	YES	2	86	0.97	0.44	0.508	0.2954	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:-:+:[40091],FRK->chr6:116252312-116381921:-,fyn_related_Src_family_tyrosine_kinase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	HCT15_LARGE_INTESTINE	0.44	0.97	0.8034	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	PRMT3--RBM4B	16	26	PRMT3	2708	chr11:20411372:+	RBM4B	27502	chr11:66436762:-	ONLY_REF_SPLICE	YES	138	33	0.23	0.56	0.189	0.3072	PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3,RBM4B->RNA_binding_motif_protein_4B,chr11:66432469-66445392:-	HCT15_LARGE_INTESTINE	0.23	0.56	0.4962	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	PLAUR--LYPD5	18	8	PLAUR	10024	chr19:44156377:-	LYPD5	23011	chr19:44303986:-	ONLY_REF_SPLICE	YES	250	0	0.09	1	0.2127	0.0945	PLAUR->Oncogene{Bushman},chr19:44150247-44174699:-,plasminogen_activator,_urokinase_receptor,LYPD5->LY6/PLAUR_domain_containing_5,chr19:44300081-44331358:-	HCT15_LARGE_INTESTINE	0.09	1	0.3072	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	GGA3--NUP85	13	19	GGA3	4273	chr17:73242590:-	NUP85	24993	chr17:73221198:+	ONLY_REF_SPLICE	YES	58	125	0.36	0.2	0.1536	0.2245	LOCAL_INVERSION:-:+:[841],GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3,NUP85->chr17:73201754-73231853:+,nucleoporin_85	HCT15_LARGE_INTESTINE	0.2	0.36	0.3781	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MBTD1--UTP18	15	10	MBTD1	1329	chr17:49337196:-	UTP18	26407	chr17:49340635:+	ONLY_REF_SPLICE	YES	15	143	0.62	0.15	0.1772	0.1181	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_INVERSION:-:+:[365],MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1,UTP18->UTP18,_small_subunit_processome_component,chr17:49337889-49375297:+	HCT15_LARGE_INTESTINE	0.15	0.62	0.2953	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	NT5DC3--RP11-642P15.1	13	13	NT5DC3	6455	chr12:104192365:-	RP11-642P15.1	35067	chr12:104300085:-	INCL_NON_REF_SPLICE	YES	30	2	0.46	0.93	0.1536	0.1536	LOCAL_REARRANGEMENT:-:[2552],NT5DC3->5'-nucleotidase_domain_containing_3,chr12:104164231-104234975:-,RP11-642P15.1->chr12:104237527-104323989:-	HCT15_LARGE_INTESTINE	0.46	0.93	0.3072	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	NCOA3--SPINT1	11	11	NCOA3	1163	chr20:46130763:+	SPINT1	30004	chr15:41136688:+	ONLY_REF_SPLICE	YES	10	97	0.69	0.18	0.13	0.13	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,SPINT1->Oncogene{Bushman},chr15:41136216-41150405:+,serine_peptidase_inhibitor,_Kunitz_type_1	HCT15_LARGE_INTESTINE	0.18	0.69	0.26	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	FYN--KRT18P65	9	1	FYN	3621	chr6:112167792:-	KRT18P65	37428	chr6:112683202:-	INCL_NON_REF_SPLICE	YES	5	0	0.67	1	0.1063	0.0118	FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-,KRT18P65->chr6:112682639-112684039:-,keratin_18_pseudogene_65	HCT15_LARGE_INTESTINE	0.67	1	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	FRK--NT5DC1	1	25	FRK	6190	chr6:116288714:-	NT5DC1	31327	chr6:116466601:+	ONLY_REF_SPLICE	YES	2	91	0.93	0.22	0.0118	0.2954	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:-:+:[40091],FRK->chr6:116252312-116381921:-,fyn_related_Src_family_tyrosine_kinase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	HCT15_LARGE_INTESTINE	0.22	0.93	0.3072	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	FYN--KRT18P65	7	0	FYN	1485	chr6:112194171:-	KRT18P65	37428	chr6:112683202:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0827	0	FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-,KRT18P65->chr6:112682639-112684039:-,keratin_18_pseudogene_65	HCT15_LARGE_INTESTINE	1	1	0.0827	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	GGA3--NUP85	1	17	GGA3	5372	chr17:73240700:-	NUP85	25232	chr17:73221437:+	ONLY_REF_SPLICE	NO	70	150	0.2	0.11	0.0118	0.2008	LOCAL_INVERSION:-:+:[841],GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3,NUP85->chr17:73201754-73231853:+,nucleoporin_85	HCT15_LARGE_INTESTINE	0.11	0.2	0.2126	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	GGA3--NUP85	1	10	GGA3	4273	chr17:73242590:-	NUP85	25232	chr17:73221437:+	ONLY_REF_SPLICE	YES	58	150	0.16	0.07	0.0118	0.1181	LOCAL_INVERSION:-:+:[841],GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3,NUP85->chr17:73201754-73231853:+,nucleoporin_85	HCT15_LARGE_INTESTINE	0.07	0.16	0.1299	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MBTD1--UTP18	1	10	MBTD1	3544	chr17:49333668:-	UTP18	26407	chr17:49340635:+	ONLY_REF_SPLICE	NO	8	143	0.58	0.07	0.0118	0.1181	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_INVERSION:-:+:[365],MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1,UTP18->UTP18,_small_subunit_processome_component,chr17:49337889-49375297:+	HCT15_LARGE_INTESTINE	0.07	0.58	0.1299	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	IMMP2L--AC003088.1	3	0	IMMP2L	4976	chr7:111127294:-	AC003088.1	21020	chr7:110151171:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	HCT15_LARGE_INTESTINE	1	1	0.0354	TRUE	0	2	0	1	2	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	PRMT3--RBM4B	2	4	PRMT3	1625	chr11:20409700:+	RBM4B	27502	chr11:66436762:-	ONLY_REF_SPLICE	YES	68	33	0.08	0.15	0.0236	0.0473	PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3,RBM4B->RNA_binding_motif_protein_4B,chr11:66432469-66445392:-	HCT15_LARGE_INTESTINE	0.08	0.15	0.0709	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	C12orf4--RRAS2	2	0	C12orf4	1100	chr12:4647575:-	RRAS2	30458	chr11:14317401:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C12orf4->chr12:4596894-4647674:-,chromosome_12_open_reading_frame_4,RRAS2->Oncogene{Bushman},chr11:14299472-14386052:-,related_RAS_viral_(r-ras)_oncogene_homolog_2	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	C17orf76-AS1--EIF4G2	2	0	C17orf76-AS1	1882	chr17:16343017:+	EIF4G2	21226	chr11:10822634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C17orf76-AS1->chr17:16342136-16381992:+,EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	2	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	CACUL1--NUP43	2	0	CACUL1	3970	chr10:120488807:-	NUP43	31090	chr6:150048334:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	CACUL1->CDK2_associated_cullin_domain_1,chr10:120433679-120514761:-,NUP43->chr6:150045451-150070801:-,nucleoporin_43kDa	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	ING3--CHD8	2	0	ING3	3654	chr7:120595678:+	CHD8	39393	chr14:21869230:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ING3->Oncogene{Bushman},chr7:120590803-120617270:+,inhibitor_of_growth_family_member_3,CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	NAP1L4--RPL7	2	0	NAP1L4	1124	chr11:3013484:-	RPL7	30760	chr8:74205032:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	NUP210--HDAC11	2	0	NUP210	15246	chr3:13407446:-	HDAC11	49019	chr3:13538236:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	LOCAL_INVERSION:-:+:[59415],NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa,HDAC11->chr3:13521224-13547916:+,histone_deacetylase_11	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	PRMT3--RBM4B	2	0	PRMT3	1245	chr11:20409320:+	RBM4B	27502	chr11:66436762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3,RBM4B->RNA_binding_motif_protein_4B,chr11:66432469-66445392:-	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	TBC1D16--RP11-334C17.5	2	0	TBC1D16	3895	chr17:77983959:-	RP11-334C17.5	31265	chr17:78175648:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	TBC1D16->TBC1_domain_family_member_16,chr17:77906142-78009647:-,RP11-334C17.5->chr17:78174472-78179748:-	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	TTC13--XPO7	2	0	TTC13	3487	chr1:231093970:-	XPO7	59209	chr8:21862506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	TTC13->chr1:231041989-231114621:-,tetratricopeptide_repeat_domain_13,XPO7->chr8:21777180-21864096:+,exportin_7	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	ZMIZ2--DCAF8	2	0	ZMIZ2	7621	chr7:44799059:+	DCAF8	42040	chr1:160188230:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZMIZ2->chr7:44788180-44809477:+,zinc_finger_MIZ-type_containing_2,DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	ZNF177--HNRNPD	2	0	ZNF177	17024	chr19:9490815:+	HNRNPD	24888	chr4:83292737:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF177->chr19:9434850-9493293:+,chr19:9435021-9493293:+,zinc_finger_protein_177,HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	ZNF738--NUP214	2	0	ZNF738	7035	chr19:21558766:+	NUP214	49512	chr9:134090599:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	NT5DC3--RP11-642P15.1	1	2	NT5DC3	2434	chr12:104208715:-	RP11-642P15.1	37406	chr12:104287174:-	ONLY_REF_SPLICE	YES	24	7	0.11	0.3	0.0118	0.0236	LOCAL_REARRANGEMENT:-:[2552],NT5DC3->5'-nucleotidase_domain_containing_3,chr12:104164231-104234975:-,RP11-642P15.1->chr12:104237527-104323989:-	HCT15_LARGE_INTESTINE	0.11	0.3	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	NT5DC3--RP11-642P15.1	1	2	NT5DC3	4042	chr12:104200100:-	RP11-642P15.1	37406	chr12:104287174:-	ONLY_REF_SPLICE	YES	23	7	0.12	0.3	0.0118	0.0236	LOCAL_REARRANGEMENT:-:[2552],NT5DC3->5'-nucleotidase_domain_containing_3,chr12:104164231-104234975:-,RP11-642P15.1->chr12:104237527-104323989:-	HCT15_LARGE_INTESTINE	0.12	0.3	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000997
TE125T_FIBROBLAST	KLHL29--AC012506.4	3	0	KLHL29	5038	chr2:23785351:+	AC012506.4	30381	chr2:23598331:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0664	0	LOCAL_INVERSION:+:-:[3918],KLHL29->chr2:23608088-23931481:+,kelch_like_family_member_29,AC012506.4->chr2:23598100-23604170:-	TE125T_FIBROBLAST	1	1	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	SPAG7--PRSS23	3	0	SPAG7	5546	chr17:4862646:-	PRSS23	12474	chr11:86519926:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	SPAG7->chr17:4862521-4871167:-,sperm_associated_antigen_7,PRSS23->chr11:86502101-86663952:+,protease,_serine_23	TE125T_FIBROBLAST	1	1	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	TXNL4B--CDV3	3	0	TXNL4B	7316	chr16:72119251:-	CDV3	14311	chr3:133302886:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	TXNL4B->chr16:72078188-72128330:-,thioredoxin_like_4B,CDV3->CDV3_homolog,chr3:133292574-133309105:+	TE125T_FIBROBLAST	1	1	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	VIM-AS1--ARHGAP5	3	0	VIM-AS1	1567	chr10:17271418:-	ARHGAP5	15719	chr14:32562449:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+	TE125T_FIBROBLAST	1	1	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	VIM-AS1--HSD17B12	3	0	VIM-AS1	1271	chr10:17271714:-	HSD17B12	25706	chr11:43819958:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	TE125T_FIBROBLAST	1	1	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	C9orf3--BMI1	2	0	C9orf3	24370	chr9:97767898:+	BMI1	44005	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	TE125T_FIBROBLAST	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	CLASP1--SEC22A	2	0	CLASP1	42356	chr2:122144698:-	SEC22A	67520	chr3:122978371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	CLASP1->chr2:122095352-122407163:-,cytoplasmic_linker_associated_protein_1,SEC22A->SEC22_homolog_A,_vesicle_trafficking_protein,chr3:122920774-122992977:+	TE125T_FIBROBLAST	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	CTC-429P9.4--KDM3B	2	0	CTC-429P9.4	3954	chr19:16757931:-	KDM3B	22237	chr5:137733867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	CTC-429P9.4->chr19:16688453-16770926:-,KDM3B->chr5:137688285-137772717:+,lysine_demethylase_3B	TE125T_FIBROBLAST	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000079
SW480_LARGE_INTESTINE	COPG2--MKLN1-AS1	65	38	COPG2	4965	chr7:130337709:-	MKLN1-AS1	28285	chr7:130630594:-	ONLY_REF_SPLICE	YES	89	8	0.54	0.93	0.792	0.463	COPG2->chr7:130146089-130353598:-,coatomer_protein_complex_subunit_gamma_2,MKLN1-AS1->chr7:130626519-130794935:-	SW480_LARGE_INTESTINE	0.54	0.93	1.255	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	AKAP13--PDE8A	28	39	AKAP13	1228	chr15:85924029:+	PDE8A	69389	chr15:85607601:+	ONLY_REF_SPLICE	YES	7	5	0.91	0.93	0.3412	0.4752	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	SW480_LARGE_INTESTINE	0.91	0.93	0.8164	TRUE	0	1	0	2	1	TRUE	ACH-000842
SW480_LARGE_INTESTINE	ARNTL2--RP11-59N23.3	21	4	ARNTL2	15041	chr12:27556474:+	RP11-59N23.3	25602	chr12:21912848:+	ONLY_REF_SPLICE	YES	139	0	0.15	1	0.2559	0.0487	ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+,RP11-59N23.3->chr12:21815247-21912966:+	SW480_LARGE_INTESTINE	0.15	1	0.3046	TRUE	0	0	0	2	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	MIR4435-1HG--ANAPC1	14	14	MIR4435-1HG	14499	chr2:112101638:-	ANAPC1	48681	chr2:112596089:-	ONLY_REF_SPLICE	YES	66	49	0.3	0.36	0.1706	0.1706	MIR4435-1HG->chr2:111953927-112252677:-,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	SW480_LARGE_INTESTINE	0.3	0.36	0.3412	TRUE	0	1	0	4	1	TRUE	ACH-000842
SW480_LARGE_INTESTINE	PTK2--TRAPPC9	12	10	PTK2	32129	chr8:141771264:-	TRAPPC9	74677	chr8:141381279:-	ONLY_REF_SPLICE	YES	29	2	0.43	0.92	0.1462	0.1218	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	SW480_LARGE_INTESTINE	0.43	0.92	0.268	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	YTHDF3--NKAIN3	11	4	YTHDF3	7936	chr8:64100303:+	NKAIN3	24664	chr8:63877913:+	ONLY_REF_SPLICE	YES	46	0	0.25	1	0.134	0.0487	YTHDF3->YTH_N6-methyladenosine_RNA_binding_protein_3,chr8:64081112-64125346:+,NKAIN3->Na+/K+_transporting_ATPase_interacting_3,chr8:63161150-63912211:+	SW480_LARGE_INTESTINE	0.25	1	0.1827	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	COPG2--MKLN1-AS1	1	22	COPG2	3885	chr7:130347807:-	MKLN1-AS1	28285	chr7:130630594:-	ONLY_REF_SPLICE	YES	95	8	0.19	0.74	0.0122	0.2681	COPG2->chr7:130146089-130353598:-,coatomer_protein_complex_subunit_gamma_2,MKLN1-AS1->chr7:130626519-130794935:-	SW480_LARGE_INTESTINE	0.19	0.74	0.2803	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	FAM160B2--TUSC3	4	1	FAM160B2	7617	chr8:21956871:+	TUSC3	23251	chr8:15517016:+	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0487	0.0122	{Klijn_CCL:Colo-Rectal=1},FAM160B2->chr8:21946670-21962409:+,family_with_sequence_similarity_160_member_B2,TUSC3->chr8:15274724-15624158:+,tumor_suppressor_candidate_3	SW480_LARGE_INTESTINE	0.36	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	ANP32B--SEPT7	4	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	SW480_LARGE_INTESTINE	1	1	0.0487	TRUE	1	1	0	18	1	TRUE	ACH-000842
SW480_LARGE_INTESTINE	MIR4435-1HG--ANAPC1	4	0	MIR4435-1HG	14499	chr2:112101638:-	ANAPC1	52117	chr2:112589011:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0487	0	MIR4435-1HG->chr2:111953927-112252677:-,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	SW480_LARGE_INTESTINE	1	1	0.0487	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	MYEOV--FGF3	3	0	MYEOV	1439	chr11:69062043:+	FGF3	14945	chr11:69631191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,FGF3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69624992-69633792:-,fibroblast_growth_factor_3	SW480_LARGE_INTESTINE	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	PTBP1--CAPN15	3	0	PTBP1	1431	chr19:797505:+	CAPN15	22553	chr16:596817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1,CAPN15->calpain_15,chr16:577717-604636:+	SW480_LARGE_INTESTINE	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	SLC4A7--PPP2R3A	3	0	SLC4A7	8015	chr3:27475407:-	PPP2R3A	58132	chr3:135863885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	SLC4A7->chr3:27414214-27525911:-,solute_carrier_family_4_member_7,PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha	SW480_LARGE_INTESTINE	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	RABGAP1L--RP3-436N22.3	2	3	RABGAP1L	17135	chr1:174340210:+	RP3-436N22.3	55637	chr1:173571911:+	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0244	0.0366	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,RP3-436N22.3->chr1:173524390-173581911:+	SW480_LARGE_INTESTINE	0.33	1	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	ATG4B--C9orf3	2	0	ATG4B	3487	chr2:242590750:+	C9orf3	56322	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SW480_LARGE_INTESTINE	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	CHMP3--LINC00152	2	0	CHMP3	4551	chr2:86790427:-	LINC00152	30364	chr2:87820726:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	CHMP3->charged_multivesicular_body_protein_3,chr2:86730554-86948245:-,LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152	SW480_LARGE_INTESTINE	1	1	0.0244	TRUE	0	0	0	2	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	DCUN1D2--TFDP1	2	0	DCUN1D2	1286	chr13:114144982:-	TFDP1	18891	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[93746],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	SW480_LARGE_INTESTINE	1	1	0.0244	TRUE	0	1	0	6	1	TRUE	ACH-000842
SW480_LARGE_INTESTINE	RSRC1--SCHIP1	2	0	RSRC1	11834	chr3:158015864:+	SCHIP1	30434	chr3:159603996:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,SCHIP1->chr3:159557650-159615149:+,schwannomin_interacting_protein_1	SW480_LARGE_INTESTINE	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	TINAGL1--SERINC2	2	0	TINAGL1	1081	chr1:32042196:+	SERINC2	25231	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	TINAGL1->chr1:32042116-32053288:+,tubulointerstitial_nephritis_antigen_like_1,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	SW480_LARGE_INTESTINE	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	LARP4B--GTPBP4	1	2	LARP4B	8341	chr10:909683:-	GTPBP4	31630	chr10:1038429:+	ONLY_REF_SPLICE	NO	17	3	0.15	0.5	0.0122	0.0244	LOCAL_INVERSION:-:+:[56774],LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-,GTPBP4->GTP_binding_protein_4,chr10:1034338-1065876:+	SW480_LARGE_INTESTINE	0.15	0.5	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW837_LARGE_INTESTINE	ANKRD13C--PTGER3	13	4	ANKRD13C	11079	chr1:70758071:-	PTGER3	40940	chr1:71318542:-	ONLY_REF_SPLICE	YES	6	0	0.74	1	0.2323	0.0715	ANKRD13C->ankyrin_repeat_domain_13C,chr1:70726271-70820417:-,PTGER3->chr1:71318036-71513491:-,prostaglandin_E_receptor_3	SW837_LARGE_INTESTINE	0.74	1	0.3038	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	RBM12B--FSBP	10	7	RBM12B	1389	chr8:94752857:-	FSBP	16089	chr8:95444884:-	ONLY_REF_SPLICE	YES	5	0	0.77	1	0.1787	0.1251	RBM12B->RNA_binding_motif_protein_12B,chr8:94741584-94753245:-,FSBP->chr8:95390605-95449180:-,fibrinogen_silencer_binding_protein	SW837_LARGE_INTESTINE	0.77	1	0.3038	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	TAB2--PPP1R14C	10	0	TAB2	2225	chr6:149639151:+	PPP1R14C	22604	chr6:150535880:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1787	0	TAB2->TGF-beta_activated_kinase_1/MAP3K7_binding_protein_2,chr6:149539777-149732749:+,PPP1R14C->chr6:150464212-150571493:+,protein_phosphatase_1_regulatory_inhibitor_subunit_14C	SW837_LARGE_INTESTINE	1	1	0.1787	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	RBM12B--FSBP	8	4	RBM12B	1137	chr8:94753109:-	FSBP	17799	chr8:95423543:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.1429	0.0715	RBM12B->RNA_binding_motif_protein_12B,chr8:94741584-94753245:-,FSBP->chr8:95390605-95449180:-,fibrinogen_silencer_binding_protein	SW837_LARGE_INTESTINE	0.92	1	0.2144	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	SPRED2--RAB1A	7	6	SPRED2	1676	chr2:65659096:-	RAB1A	19919	chr2:65331940:-	ONLY_REF_SPLICE	YES	1	84	0.93	0.13	0.1251	0.1072	{Klijn_CCL:Colo-Rectal=1},SPRED2->chr2:65537985-65659771:-,sprouty_related_EVH1_domain_containing_2,RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-	SW837_LARGE_INTESTINE	0.13	0.93	0.2323	TRUE	0	1	0	1	1	TRUE	ACH-000421
SW837_LARGE_INTESTINE	RBM12B--FSBP	6	6	RBM12B	3679	chr8:94749535:-	FSBP	17799	chr8:95423543:-	ONLY_REF_SPLICE	YES	6	0	0.67	1	0.1072	0.1072	RBM12B->RNA_binding_motif_protein_12B,chr8:94741584-94753245:-,FSBP->chr8:95390605-95449180:-,fibrinogen_silencer_binding_protein	SW837_LARGE_INTESTINE	0.67	1	0.2144	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	RBM12B--FSBP	6	5	RBM12B	1389	chr8:94752857:-	FSBP	17799	chr8:95423543:-	ONLY_REF_SPLICE	YES	5	0	0.69	1	0.1072	0.0893	RBM12B->RNA_binding_motif_protein_12B,chr8:94741584-94753245:-,FSBP->chr8:95390605-95449180:-,fibrinogen_silencer_binding_protein	SW837_LARGE_INTESTINE	0.69	1	0.1965	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	DCK--SLC35B1	3	0	DCK	3596	chr4:71863899:+	SLC35B1	16159	chr17:47784430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0	DCK->chr4:71858255-71896631:+,deoxycytidine_kinase,SLC35B1->chr17:47778305-47786376:-,solute_carrier_family_35_member_B1	SW837_LARGE_INTESTINE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	FAM135A--DIP2B	3	0	FAM135A	25362	chr6:71243557:+	DIP2B	51595	chr12:51086732:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0	FAM135A->chr6:71122644-71270877:+,family_with_sequence_similarity_135_member_A,DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B	SW837_LARGE_INTESTINE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	IFT43--RNPEP	3	0	IFT43	3738	chr14:76455320:+	RNPEP	18088	chr1:201958032:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0	IFT43->chr14:76368479-76550928:+,intraflagellar_transport_43,RNPEP->arginyl_aminopeptidase,chr1:201951500-201975275:+	SW837_LARGE_INTESTINE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	PCDH1--BCAM	3	0	PCDH1	8461	chr5:141243451:-	BCAM	20365	chr19:45316703:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	PCDH1->chr5:141232938-141258811:-,protocadherin_1,BCAM->basal_cell_adhesion_molecule_(Lutheran_blood_group),chr19:45312328-45324673:+	SW837_LARGE_INTESTINE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	RBM12B--FSBP	1	5	RBM12B	1137	chr8:94753109:-	FSBP	16089	chr8:95444884:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0179	0.0893	RBM12B->RNA_binding_motif_protein_12B,chr8:94741584-94753245:-,FSBP->chr8:95390605-95449180:-,fibrinogen_silencer_binding_protein	SW837_LARGE_INTESTINE	0.86	1	0.1072	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	ANK3--SGMS1	2	0	ANK3	1228	chr10:62493021:-	SGMS1	90632	chr10:52071175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-,SGMS1->Oncogene{Bushman},chr10:52065360-52384923:-,sphingomyelin_synthase_1	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	ETNK1--SEPT7	2	0	ETNK1	1512	chr12:22778520:+	SEPT7	26799	chr7:35912276:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,SEPT7->chr7:35840542-35944917:+,septin_7	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	PRSS23--NXNL2	2	0	PRSS23	8412	chr11:86534635:+	NXNL2	25078	chr9:91159294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	PRSS23->chr11:86502101-86663952:+,protease,_serine_23,NXNL2->chr9:91150016-91199189:+,nucleoredoxin-like_2	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	TACC3--METRNL	2	0	TACC3	12081	chr4:1741729:+	METRNL	20511	chr17:81042814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3,METRNL->chr17:81037567-81052864:+,meteorin,_glial_cell_differentiation_regulator-like	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	TCERG1--CDC25A	2	0	TCERG1	18530	chr5:145872601:+	CDC25A	38760	chr3:48222330:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	TCERG1->chr5:145826874-145891524:+,transcription_elongation_regulator_1,CDC25A->Oncogene{Bushman},cell_division_cycle_25A,chr3:48198636-48229892:-	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	TMEM127--CPSF7	2	0	TMEM127	1126	chr2:96931607:-	CPSF7	14182	chr11:61196762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	TMEM127->chr2:96914254-96931732:-,transmembrane_protein_127,CPSF7->chr11:61170121-61197503:-,cleavage_and_polyadenylation_specific_factor_7	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	TMEM14B--STK3	2	0	TMEM14B	5163	chr6:10755465:+	STK3	49900	chr8:99539145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	TMEM14B->chr6:10747992-10852986:+,transmembrane_protein_14B,STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
HS870T_FIBROBLAST	PRKD1--CTD-2251F13.1	2	3	PRKD1	2678	chr14:30516916:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0.0385	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	HS870T_FIBROBLAST	1	1	0.0642	TRUE	0	0	0	2	0	TRUE	ACH-000340
HS870T_FIBROBLAST	PRKD1--CTD-2251F13.1	2	2	PRKD1	1600	chr14:30660505:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0.0257	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	HS870T_FIBROBLAST	1	1	0.0514	TRUE	0	1	0	5	1	TRUE	ACH-000340
HS870T_FIBROBLAST	RAB40C--ZDHHC8	2	0	RAB40C	2077	chr16:640433:+	ZDHHC8	16174	chr22:20126717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,ZDHHC8->chr22:20116979-20135530:+,zinc_finger_DHHC-type_containing_8	HS870T_FIBROBLAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000340
HS870T_FIBROBLAST	RP11-20I20.2--NAP1L4	2	0	RP11-20I20.2	1114	chr4:1107540:+	NAP1L4	12612	chr11:3000467:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	RP11-20I20.2->chr4:1107427-1126765:+,NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4	HS870T_FIBROBLAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000340
HS870T_FIBROBLAST	ZEB1--LRPAP1	2	0	ZEB1	1798	chr10:31608221:+	LRPAP1	30727	chr4:3526778:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,LRPAP1->LDL_receptor_related_protein_associated_protein_1,chr4:3508103-3534286:-	HS870T_FIBROBLAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000340
COLO668_LUNG	NFYC--ZFP69B	654	356	NFYC	1220	chr1:41157539:+	ZFP69B	29792	chr1:40922617:+	ONLY_REF_SPLICE	YES	275	475	0.79	0.68	7.6315	4.1542	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	COLO668_LUNG	0.68	0.79	11.7857	TRUE	0	1	0	1	1	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	320	4	RPL14	4483	chr3:40503515:+	AC005540.3	8966	chr2:191745649:-	INCL_NON_REF_SPLICE	YES	3093	2	0.09	0.99	3.7341	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.09	0.99	3.7808	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	ZFP69B--RLF	137	97	ZFP69B	4568	chr1:40923111:+	RLF	15704	chr1:40688246:+	ONLY_REF_SPLICE	YES	1041	564	0.18	0.29	1.5987	1.1319	HGNC_GENEFAM,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+,RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion	COLO668_LUNG	0.18	0.29	2.7306	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	NFYC--ZFP69B	7	369	NFYC	1553	chr1:41157872:+	ZFP69B	29792	chr1:40922617:+	ONLY_REF_SPLICE	YES	221	475	0.63	0.44	0.0817	4.3059	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	COLO668_LUNG	0.44	0.63	4.3876	TRUE	0	1	0	1	1	TRUE	ACH-000803
COLO668_LUNG	NFYC--ZFP69B	3	356	NFYC	1411	chr1:41157730:+	ZFP69B	29792	chr1:40922617:+	INCL_NON_REF_SPLICE	YES	218	475	0.62	0.43	0.035	4.1542	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	COLO668_LUNG	0.43	0.62	4.1892	TRUE	0	1	0	1	1	TRUE	ACH-000803
COLO668_LUNG	RLF--RIMS3	80	45	RLF	1264	chr1:40627308:+	RIMS3	18511	chr1:41113514:-	ONLY_REF_SPLICE	YES	622	17	0.17	0.88	0.9335	0.5251	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	COLO668_LUNG	0.17	0.88	1.4586	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	80	0	RPL14	4486	chr3:40503518:+	AC005540.3	8972	chr2:191745643:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9335	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	1	1	0.9335	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	50	0	RPL14	4486	chr3:40503518:+	AC005540.3	8975	chr2:191745640:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5834	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	1	1	0.5834	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	EXO5--RP4-739H11.4	28	30	EXO5	3170	chr1:40980306:+	RP4-739H11.4	8292	chr1:41157539:-	INCL_NON_REF_SPLICE	YES	289	131	0.17	0.31	0.3267	0.3501	EXO5->chr1:40974413-40982228:+,exonuclease_5,RP4-739H11.4->chr1:41156052-41157738:-	COLO668_LUNG	0.17	0.31	0.6768	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	EXO5--RP4-739H11.4	24	34	EXO5	4655	chr1:40981791:+	RP4-739H11.4	8292	chr1:41157539:-	INCL_NON_REF_SPLICE	YES	57	131	0.5	0.31	0.2801	0.3967	EXO5->chr1:40974413-40982228:+,exonuclease_5,RP4-739H11.4->chr1:41156052-41157738:-	COLO668_LUNG	0.31	0.5	0.6768	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	AP003900.6--FAM230A	27	6	AP003900.6	1122	chr21:11169841:+	FAM230A	9140	chr22:20695279:+	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.3151	0.07	AP003900.6->chr21:11169720-11184046:+,FAM230A->chr22:20692438-20716938:+,family_with_sequence_similarity_230_member_A	COLO668_LUNG	0.94	1	0.3851	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	CAP1--ZNF684	25	5	CAP1	1569	chr1:40506473:+	ZNF684	19413	chr1:41006258:+	ONLY_REF_SPLICE	YES	10	477	0.75	0.06	0.2917	0.0583	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684	COLO668_LUNG	0.06	0.75	0.35	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	24	4	RPL14	4492	chr3:40503524:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	2616	2	0.01	0.93	0.2801	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.01	0.93	0.3268	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	MFSD2A--BMP8A	17	30	MFSD2A	1256	chr1:40421057:+	BMP8A	15432	chr1:39976846:+	ONLY_REF_SPLICE	YES	1060	52	0.04	0.47	0.1984	0.3501	MFSD2A->chr1:40420802-40435638:+,major_facilitator_superfamily_domain_containing_2A,BMP8A->bone_morphogenetic_protein_8a,chr1:39957318-39991607:+	COLO668_LUNG	0.04	0.47	0.5485	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	23	4	RPL14	4498	chr3:40503530:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	2506	2	0.01	0.93	0.2684	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.01	0.93	0.3151	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	NFYC--ZFP69B	2	81	NFYC	1220	chr1:41157539:+	ZFP69B	30191	chr1:40923016:+	ONLY_REF_SPLICE	YES	275	709	0.23	0.1	0.0233	0.9452	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	COLO668_LUNG	0.1	0.23	0.9685	TRUE	0	1	0	1	1	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	21	4	RPL14	4495	chr3:40503527:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	2530	2	0.01	0.93	0.245	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.01	0.93	0.2917	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	19	4	RPL14	4487	chr3:40503519:+	AC005540.3	8967	chr2:191745648:-	INCL_NON_REF_SPLICE	YES	3108	2	0.01	0.92	0.2217	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.01	0.92	0.2684	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	RLF--RIMS3	9	27	RLF	1264	chr1:40627308:+	RIMS3	18591	chr1:41113434:-	ONLY_REF_SPLICE	YES	622	30	0.05	0.55	0.105	0.3151	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	COLO668_LUNG	0.05	0.55	0.4201	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	ZNF684--RP4-739H11.3	12	13	ZNF684	2266	chr1:40998853:+	RP4-739H11.3	11627	chr1:41153274:-	INCL_NON_REF_SPLICE	YES	480	0	0.05	1	0.14	0.1517	ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684,RP4-739H11.3->chr1:41134761-41153260:-	COLO668_LUNG	0.05	1	0.2917	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	14	4	RPL14	4485	chr3:40503517:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	3096	2	0.01	0.9	0.1634	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.01	0.9	0.2101	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	RLF--RIMS3	2	47	RLF	3501	chr1:40656525:+	RIMS3	18511	chr1:41113514:-	ONLY_REF_SPLICE	YES	658	17	0.07	0.74	0.0233	0.5484	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	COLO668_LUNG	0.07	0.74	0.5717	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RLF--RIMS3	1	48	RLF	5837	chr1:40668286:+	RIMS3	18511	chr1:41113514:-	ONLY_REF_SPLICE	YES	579	17	0.08	0.74	0.0117	0.5601	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	COLO668_LUNG	0.08	0.74	0.5718	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	12	4	RPL14	4501	chr3:40503533:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	2464	2	0.01	0.89	0.14	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.01	0.89	0.1867	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	AP003900.6--FAM230A	7	3	AP003900.6	1122	chr21:11169841:+	FAM230A	11779	chr22:20703776:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0817	0.035	AP003900.6->chr21:11169720-11184046:+,FAM230A->chr22:20692438-20716938:+,family_with_sequence_similarity_230_member_A	COLO668_LUNG	0.83	1	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	AP003900.6--FAM230A	6	4	AP003900.6	1122	chr21:11169841:+	FAM230A	10692	chr22:20698777:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.07	0.0467	AP003900.6->chr21:11169720-11184046:+,FAM230A->chr22:20692438-20716938:+,family_with_sequence_similarity_230_member_A	COLO668_LUNG	0.83	1	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	6	4	RPL14	4476	chr3:40503508:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	3065	2	0	0.83	0.07	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0	0.83	0.1167	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	AP003900.6--FAM230A	4	11	AP003900.6	3299	chr21:11174002:+	FAM230A	9140	chr22:20695279:+	ONLY_REF_SPLICE	YES	14	0	0.52	1	0.0467	0.1284	AP003900.6->chr21:11169720-11184046:+,FAM230A->chr22:20692438-20716938:+,family_with_sequence_similarity_230_member_A	COLO668_LUNG	0.52	1	0.1751	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	6	0	RPL14	4486	chr3:40503518:+	AC005540.3	8978	chr2:191745637:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.07	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	1	1	0.07	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	AP003900.6--FAM230A	4	6	AP003900.6	3299	chr21:11174002:+	FAM230A	11779	chr22:20703776:+	ONLY_REF_SPLICE	YES	14	0	0.42	1	0.0467	0.07	AP003900.6->chr21:11169720-11184046:+,FAM230A->chr22:20692438-20716938:+,family_with_sequence_similarity_230_member_A	COLO668_LUNG	0.42	1	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	ZNF684--PPIE	1	18	ZNF684	2266	chr1:40998853:+	PPIE	13048	chr1:40201140:+	ONLY_REF_SPLICE	NO	480	0	0.04	1	0.0117	0.21	ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	COLO668_LUNG	0.04	1	0.2217	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	IFNAR2--RBFA	4	0	IFNAR2	4961	chr21:34617379:+	RBFA	23088	chr18:77801910:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0467	0	IFNAR2->chr21:34602206-34637980:+,interferon_alpha_and_beta_receptor_subunit_2,RBFA->chr18:77794358-77806397:+,ribosome_binding_factor_A_(putative)	COLO668_LUNG	1	1	0.0467	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	AC073283.4--ADAM17	2	0	AC073283.4	1174	chr2:47572040:-	ADAM17	25726	chr2:9650260:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	AC073283.4->chr2:47419544-47572213:-,ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	ADAM10--DFNB31	2	0	ADAM10	16025	chr15:58925514:-	DFNB31	35875	chr9:117228672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ADAM10->ADAM_metallopeptidase_domain_10,chr15:58887403-59042177:-,DFNB31->chr9:117164360-117267730:-,deafness,_autosomal_recessive_31	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	AGPAT3--TNK2	2	0	AGPAT3	14510	chr21:45379740:+	TNK2	41335	chr3:195615477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx&tcga_normals:1/3694=0.03%,AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	ATXN2--NUP98	2	0	ATXN2	17370	chr12:111947353:-	NUP98	60701	chr11:3727857:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ATXN2->ataxin_2,chr12:111890018-112037480:-,NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	CALCA--TPD52	2	0	CALCA	4479	chr11:14990372:-	TPD52	27038	chr8:80956443:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CALCA->Oncogene{Bushman},calcitonin_related_polypeptide_alpha,chr11:14988214-14993900:-,TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	CAP1--ZMPSTE24	2	0	CAP1	1551	chr1:40506455:+	ZMPSTE24	27022	chr1:40751597:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	CEP170--SDCCAG8	2	0	CEP170	5453	chr1:243385026:-	SDCCAG8	50643	chr1:243493842:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Artery_-_Coronary=1,Nerve_-_Tibial=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[670],CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	COLO668_LUNG	1	1	0.0233	TRUE	0	1	0	1	1	TRUE	ACH-000803
COLO668_LUNG	COG5--TIPARP	2	0	COG5	7293	chr7:107167682:-	TIPARP	43867	chr3:156421213:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,TIPARP->TCDD_inducible_poly(ADP-ribose)_polymerase,chr3:156391024-156424559:+	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	COX7A2L--LPIN1	2	0	COX7A2L	8717	chr2:42588230:-	LPIN1	28825	chr2:11905659:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	COX7A2L->chr2:42560686-42652228:-,cytochrome_c_oxidase_subunit_7A2_like,LPIN1->chr2:11817721-11967535:+,lipin_1	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	JAZF1--MEOX2	2	0	JAZF1	1281	chr7:28220082:-	MEOX2	20061	chr7:15666543:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	JAZF1->JAZF_zinc_finger_1,Oncogene{Bushman},chr7:27870192-28220362:-,MEOX2->chr7:15650837-15726437:-,mesenchyme_homeobox_2	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	OPHN1--IDS	2	0	OPHN1	6301	chrX:67494580:-	IDS	57351	chrX:148564749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	OPHN1->chrX:67262186-67653755:-,oligophrenin_1,IDS->chrX:148558521-148615470:-,chrX:148564074-148615470:-,iduronate_2-sulfatase	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	PAFAH1B1--METTL16	2	0	PAFAH1B1	1797	chr17:2497300:+	METTL16	26041	chr17:2405625:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	LOCAL_INVERSION:+:-:[81319],PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1,METTL16->chr17:2308856-2415185:-,methyltransferase_like_16	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	PTDSS1--SLC20A1	2	0	PTDSS1	8974	chr8:97316409:+	SLC20A1	25314	chr2:113410279:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	PTDSS1->chr8:97273943-97349223:+,phosphatidylserine_synthase_1,SLC20A1->chr2:113403434-113421404:+,solute_carrier_family_20_member_1	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	SEC11C--RIF1	2	0	SEC11C	7744	chr18:56823039:+	RIF1	37850	chr2:152315325:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	SEC11C->SEC11_homolog_C,_signal_peptidase_complex_subunit,chr18:56806709-56826068:+,RIF1->chr2:152266397-152364527:+,replication_timing_regulatory_factor_1	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	SREBF2--NHP2L1	2	0	SREBF2	1254	chr22:42229362:+	NHP2L1	34900	chr22:42076368:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,NHP2L1->chr22:42069934-42086508:-	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	STK33--PRMT3	2	0	STK33	25637	chr11:8435042:-	PRMT3	47242	chr11:20515465:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	STK33->chr11:8413418-8615836:-,serine/threonine_kinase_33,PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	TUBGCP3--CUL4A	2	0	TUBGCP3	1263	chr13:113242219:-	CUL4A	32253	chr13:113873259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},TUBGCP3->chr13:113139325-113242481:-,tubulin_gamma_complex_associated_protein_3,CUL4A->chr13:113862552-113919399:+,cullin_4A	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	UBQLN1--GKAP1	2	0	UBQLN1	1704	chr9:86322415:-	GKAP1	31396	chr9:86368274:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[31218],UBQLN1->chr9:86274878-86323118:-,ubiquilin_1,GKAP1->G_kinase_anchoring_protein_1,chr9:86354336-86444431:-	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	2	0	TRUE	ACH-000803
COLO668_LUNG	VAV2--EHMT1	2	0	VAV2	1530	chr9:136857197:-	EHMT1	57187	chr9:140674087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMS1P20--TRBV5-1	231	0	BMS1P20	9525	chr22:22677056:+	TRBV5-1	13347	chr7:142021170:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.2777	0	BMS1P20->BMS1,_ribosome_biogenesis_factor_pseudogene_20,chr22:22657589-22677203:+,TRBV5-1->T_cell_receptor_beta_variable_5-1,chr7:142020496-142021363:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.2777	TRUE	0	0	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNAS	3	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	0	3	0	13	2	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT10--UBP1	2	0	CNOT10	1338	chr3:32726974:+	UBP1	32961	chr3:33467233:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	CNOT10->CCR4-NOT_transcription_complex_subunit_10,chr3:32726637-32815367:+,UBP1->chr3:33429828-33482863:-,upstream_binding_protein_1_(LBP-1a)	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT4--RP11-155G14.5	2	0	CNOT4	8430	chr7:135095265:-	RP11-155G14.5	23695	chr7:128106617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	CNOT4->CCR4-NOT_transcription_complex_subunit_4,chr7:135046547-135194875:-,RP11-155G14.5->chr7:128106617-128109225:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CCNB1IP1	2	0	CPSF6	11046	chr12:69656342:+	CCNB1IP1	32498	chr14:20781960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	1	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CRNDE--CBWD1	2	0	CRNDE	2809	chr16:54959013:-	CBWD1	34882	chr9:146158:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	CRNDE->chr16:54952775-54963101:-,colorectal_neoplasia_differentially_expressed_(non-protein_coding),CBWD1->COBW_domain_containing_1,chr9:121041-188979:-	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4A2--KIAA1430	2	0	EIF4A2	1435	chr3:186501428:+	KIAA1430	14178	chr4:186112366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,KIAA1430->chr4:186080819-186130658:-	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MINK1--CTDP1	2	0	MINK1	1253	chr17:4736935:+	CTDP1	38458	chr18:77496355:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1,CTDP1->CTD_phosphatase_subunit_1,chr18:77439801-77514510:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--MRPL3	2	0	RCC1	2175	chr1:28834672:+	MRPL3	27527	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	6	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TERF2IP--PHACTR1	2	0	TERF2IP	4157	chr16:75690239:+	PHACTR1	26869	chr6:13273092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	TERF2IP->TERF2_interacting_protein,chr16:75681684-75795770:+,PHACTR1->chr6:12717893-13288645:+,phosphatase_and_actin_regulator_1	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000877
NCIH1581_LUNG	INPP4B--ANAPC10	73	37	INPP4B	7802	chr4:143646992:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	YES	30	37	0.79	0.75	0.9158	0.4642	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.75	0.79	1.38	TRUE	0	0	0	2	0	TRUE	ACH-000015
NCIH1581_LUNG	INPP4B--ANAPC10	42	86	INPP4B	11304	chr4:143481610:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	YES	28	37	0.82	0.78	0.5269	1.0788	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.78	0.82	1.6057	TRUE	0	0	0	2	0	TRUE	ACH-000015
NCIH1581_LUNG	RP11-353N4.6--RP11-403I13.7	25	37	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	224	0	0.22	1	0.3136	0.4642	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	NCIH1581_LUNG	0.22	1	0.7778	TRUE	1	0	0	4	0	TRUE	ACH-000015
NCIH1581_LUNG	RP11-353N4.6--RP11-403I13.7	15	37	RP11-353N4.6	2221	chr1:149576702:+	RP11-403I13.7	14803	chr1:149284650:+	INCL_NON_REF_SPLICE	YES	231	0	0.18	1	0.1882	0.4642	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	NCIH1581_LUNG	0.18	1	0.6524	TRUE	1	0	0	4	0	TRUE	ACH-000015
NCIH1581_LUNG	INPP4B--ANAPC10	16	19	INPP4B	7802	chr4:143646992:-	ANAPC10	64641	chr4:146002902:-	ONLY_REF_SPLICE	YES	30	399	0.54	0.08	0.2007	0.2383	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.08	0.54	0.439	TRUE	0	0	0	2	0	TRUE	ACH-000015
NCIH1581_LUNG	INPP4B--ANAPC10	5	49	INPP4B	11304	chr4:143481610:-	ANAPC10	64641	chr4:146002902:-	ONLY_REF_SPLICE	YES	28	399	0.66	0.12	0.0627	0.6147	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.12	0.66	0.6774	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	RP11-353N4.6--RP11-403I13.7	7	39	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	236	0	0.16	1	0.0878	0.4892	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	NCIH1581_LUNG	0.16	1	0.577	TRUE	1	0	0	4	0	TRUE	ACH-000015
NCIH1581_LUNG	ANKLE2--PGAM5	13	1	ANKLE2	6732	chr12:133332743:-	PGAM5	37560	chr12:133298420:+	INCL_NON_REF_SPLICE	NO	71	320	0.16	0.04	0.1631	0.0125	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[3026],ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	NCIH1581_LUNG	0.04	0.16	0.1756	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	INPP4B--ANAPC10	4	37	INPP4B	8922	chr4:143581930:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	YES	30	37	0.58	0.53	0.0502	0.4642	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.53	0.58	0.5144	TRUE	0	0	0	2	0	TRUE	ACH-000015
NCIH1581_LUNG	CHFR--FGD4	11	8	CHFR	2239	chr12:133522207:-	FGD4	42528	chr12:32717071:+	ONLY_REF_SPLICE	YES	0	6	1	0.76	0.138	0.1004	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+	NCIH1581_LUNG	0.76	1	0.2384	TRUE	0	0	0	2	0	TRUE	ACH-000015
NCIH1581_LUNG	INPP4B--ANAPC10	1	40	INPP4B	8922	chr4:143581930:-	ANAPC10	61998	chr4:146018912:-	ONLY_REF_SPLICE	NO	30	32	0.58	0.56	0.0125	0.5018	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.56	0.58	0.5143	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	LYPLAL1--RRP15	8	0	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1004	0	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	NCIH1581_LUNG	1	1	0.1004	TRUE	0	12	0	13	2	TRUE	ACH-000015
NCIH1581_LUNG	RP11-353N4.6--RP11-403I13.7	5	12	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	16052	chr1:149286755:+	ONLY_REF_SPLICE	YES	224	22	0.07	0.44	0.0627	0.1505	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	NCIH1581_LUNG	0.07	0.44	0.2132	TRUE	0	0	0	3	0	TRUE	ACH-000015
NCIH1581_LUNG	RERE--ST3GAL3	4	6	RERE	5242	chr1:8763114:-	ST3GAL3	47870	chr1:44280563:+	ONLY_REF_SPLICE	YES	30	48	0.25	0.17	0.0502	0.0753	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+	NCIH1581_LUNG	0.17	0.25	0.1255	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	RP11-353N4.6--RP11-403I13.7	2	13	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.7	16052	chr1:149286755:+	ONLY_REF_SPLICE	YES	236	22	0.06	0.41	0.0251	0.1631	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	NCIH1581_LUNG	0.06	0.41	0.1882	TRUE	0	0	0	3	0	TRUE	ACH-000015
NCIH1581_LUNG	ANKRD11--GNAL	4	0	ANKRD11	1317	chr16:89556653:-	GNAL	48530	chr18:11862394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0502	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,GNAL->G_protein_subunit_alpha_L,chr18:11688955-11885684:+	NCIH1581_LUNG	1	1	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	ANK1--RP11-863K10.2	3	2	ANK1	11509	chr8:41580643:-	RP11-863K10.2	53515	chr8:37590596:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0376	0.0251	ANK1->ankyrin_1,chr8:41510739-41754280:-,RP11-863K10.2->chr8:37575097-37591274:+	NCIH1581_LUNG	0.83	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	ACP2--METTL3	2	0	ACP2	1231	chr11:47270227:-	METTL3	21188	chr14:21967281:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	ACP2->acid_phosphatase_2,_lysosomal,chr11:47260853-47270457:-,METTL3->chr14:21966277-21979517:-,methyltransferase_like_3	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	C6orf62--TIMMDC1	2	0	C6orf62	3297	chr6:24718768:-	TIMMDC1	15033	chr3:119222379:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	C6orf62->chr6:24705089-24721064:-,chromosome_6_open_reading_frame_62,TIMMDC1->chr3:119217379-119243937:+,translocase_of_inner_mitochondrial_membrane_domain_containing_1	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	DAZAP1--C19orf24	2	0	DAZAP1	1234	chr19:1407801:+	C19orf24	23989	chr19:1277182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+,C19orf24->chr19:1275026-1279248:+,chromosome_19_open_reading_frame_24	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	1	1	0	TRUE	ACH-000015
NCIH1581_LUNG	NCL--PNISR	2	0	NCL	10526	chr2:232321712:-	PNISR	32159	chr6:99848187:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	NCL->chr2:232318242-232348352:-,nucleolin,PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	NFIC--CCDC130	2	0	NFIC	2241	chr19:3366664:+	CCDC130	28696	chr19:13862422:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C,CCDC130->chr19:13842574-13874110:+,coiled-coil_domain_containing_130	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	POLR3H--AKAP8L	2	0	POLR3H	2952	chr22:41936703:-	AKAP8L	27797	chr19:15491423:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	POLR3H->chr22:41921808-41940610:-,polymerase_(RNA)_III_subunit_H,AKAP8L->A-kinase_anchoring_protein_8_like,chr19:15490859-15529952:-	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	RCC1--FERMT2	2	0	RCC1	2175	chr1:28834672:+	FERMT2	26476	chr14:53348546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,FERMT2->chr14:53323986-53419153:-,fermitin_family_member_2	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	REV3L--AHSA2	2	0	REV3L	12348	chr6:111708968:-	AHSA2	50667	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	SLC25A13--GTPBP10	2	0	SLC25A13	1206	chr7:95951254:-	GTPBP10	32979	chr7:89982130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	NCIH1581_LUNG	1	1	0.0251	TRUE	0	1	0	1	1	TRUE	ACH-000015
NCIH1581_LUNG	TSPAN4--TACC3	2	0	TSPAN4	3911	chr11:847300:+	TACC3	17018	chr4:1725148:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	TSPAN4->chr11:842808-867116:+,tetraspanin_4,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	ZNF638--USP47	2	0	ZNF638	16374	chr2:71597135:+	USP47	81868	chr11:11977548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	RP11-20I20.2--CTBP1	1	1	RP11-20I20.2	1114	chr4:1107540:+	CTBP1	8481	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	44	1	0.04	0.0125	0.0125	LOCAL_INVERSION:+:-:[78471],RP11-20I20.2->chr4:1107427-1126765:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1581_LUNG	0.04	1	0.025	TRUE	0	1	1	6	1	TRUE	ACH-000015
NCIH1581_LUNG	RP5-977B1.7--TGIF2	1	1	RP5-977B1.7	2583	chr20:35199844:-	TGIF2	17191	chr20:35207144:+	ONLY_REF_SPLICE	YES	13	8	0.13	0.2	0.0125	0.0125	LOCAL_INVERSION:-:+:[97],RP5-977B1.7->chr20:35136563-35201794:-,TGIF2->TGFB_induced_factor_homeobox_2,chr20:35201891-35222353:+	NCIH1581_LUNG	0.13	0.2	0.025	TRUE	0	3	0	3	3	TRUE	ACH-000015
NCIH211_LUNG	DDX52--AATF	428	183	DDX52	2355	chr17:36002139:-	AATF	27169	chr17:35307514:+	ONLY_REF_SPLICE	YES	132	216	0.82	0.74	4.358	1.8633	DDX52->DEAD-box_helicase_52,chr17:35969787-36003493:-,AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+	NCIH211_LUNG	0.74	0.82	6.2213	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	PTPN12--CCDC146	186	34	PTPN12	1371	chr7:77166962:+	CCDC146	31352	chr7:76866264:+	ONLY_REF_SPLICE	YES	6	0	0.97	1	1.8939	0.3462	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	NCIH211_LUNG	0.97	1	2.2401	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CDC20--HECTD4	97	37	CDC20	1684	chr1:43825309:+	HECTD4	49323	chr12:112666615:-	ONLY_REF_SPLICE	YES	133	62	0.5	0.68	0.9877	0.3767	CDC20->Oncogene{Bushman},cell_division_cycle_20,chr1:43824626-43828874:+,HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-	NCIH211_LUNG	0.5	0.68	1.3644	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	NUMA1--TTC28	77	36	NUMA1	3816	chr11:71780888:-	TTC28	56795	chr22:28492396:-	ONLY_REF_SPLICE	YES	158	6	0.42	0.95	0.784	0.3666	NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	NCIH211_LUNG	0.42	0.95	1.1506	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	C6orf106--NQO2	73	32	C6orf106	4888	chr6:34614378:-	NQO2	16276	chr6:2994165:+	ONLY_REF_SPLICE	YES	126	0	0.45	1	0.7433	0.3258	C6orf106->chr6:34555065-34664636:-,chromosome_6_open_reading_frame_106,NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+	NCIH211_LUNG	0.45	1	1.0691	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	HNRNPA3--AGPS	49	13	HNRNPA3	5894	chr2:178084042:+	AGPS	34005	chr2:178402802:+	ONLY_REF_SPLICE	YES	1123	64	0.05	0.49	0.4989	0.1324	HNRNPA3->Oncogene{Bushman},chr2:178077291-178088686:+,heterogeneous_nuclear_ribonucleoprotein_A3,AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+	NCIH211_LUNG	0.05	0.49	0.6313	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	PTPN12--CCDC146	46	10	PTPN12	1371	chr7:77166962:+	CCDC146	34175	chr7:76883823:+	ONLY_REF_SPLICE	YES	6	52	0.9	0.52	0.4684	0.1018	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	NCIH211_LUNG	0.52	0.9	0.5702	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	PTPN12--CCDC146	34	20	PTPN12	1371	chr7:77166962:+	CCDC146	32435	chr7:76871008:+	ONLY_REF_SPLICE	YES	6	0	0.9	1	0.3462	0.2036	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	NCIH211_LUNG	0.9	1	0.5498	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	ATXN2--UNC5C	29	7	ATXN2	6723	chr12:111990084:-	UNC5C	38281	chr4:96256782:-	ONLY_REF_SPLICE	YES	74	0	0.33	1	0.2953	0.0713	ATXN2->ataxin_2,chr12:111890018-112037480:-,UNC5C->chr4:96083655-96470357:-,unc-5_netrin_receptor_C	NCIH211_LUNG	0.33	1	0.3666	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	SPTAN1--COLQ	27	10	SPTAN1	2990	chr9:131329256:+	COLQ	50947	chr3:15531144:-	ONLY_REF_SPLICE	YES	31	1	0.54	0.97	0.2749	0.1018	SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,COLQ->chr3:15491640-15563258:-,collagen-like_tail_subunit_(single_strand_of_homotrimer)_of_asymmetric_acetylcholinesterase	NCIH211_LUNG	0.54	0.97	0.3767	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CMTM4--CCDC79	26	2	CMTM4	1368	chr16:66730243:-	CCDC79	18754	chr16:66824922:-	ONLY_REF_SPLICE	YES	35	0	0.44	1	0.2647	0.0204	LOCAL_REARRANGEMENT:-:[58269],CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,CCDC79->chr16:66788879-66835523:-,coiled-coil_domain_containing_79	NCIH211_LUNG	0.44	1	0.2851	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	NUMA1--TTC28	12	38	NUMA1	5329	chr11:71779151:-	TTC28	56795	chr22:28492396:-	ONLY_REF_SPLICE	YES	183	6	0.21	0.89	0.1222	0.3869	NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	NCIH211_LUNG	0.21	0.89	0.5091	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	WDPCP--RP5-1198O20.4	17	10	WDPCP	11021	chr2:63714581:-	RP5-1198O20.4	49802	chr1:44526804:+	ONLY_REF_SPLICE	YES	17	0	0.61	1	0.1731	0.1018	WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,RP5-1198O20.4->chr1:44501798-44570647:+	NCIH211_LUNG	0.61	1	0.2749	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	EEPD1--CAMK2B	14	3	EEPD1	3054	chr7:36194811:+	CAMK2B	19915	chr7:44323824:-	ONLY_REF_SPLICE	YES	37	1	0.31	0.94	0.1426	0.0305	EEPD1->chr7:36192758-36341152:+,endonuclease/exonuclease/phosphatase_family_domain_containing_1,CAMK2B->Oncogene{Bushman},calcium/calmodulin_dependent_protein_kinase_II_beta,chr7:44256749-44374176:-	NCIH211_LUNG	0.31	0.94	0.1731	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	NUMA1--TTC28	2	39	NUMA1	10505	chr11:71761708:-	TTC28	56795	chr22:28492396:-	ONLY_REF_SPLICE	YES	186	6	0.18	0.87	0.0204	0.3971	NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	NCIH211_LUNG	0.18	0.87	0.4175	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	PTPN12--CCDC146	2	34	PTPN12	1832	chr7:77167423:+	CCDC146	31352	chr7:76866264:+	ONLY_REF_SPLICE	YES	17	0	0.68	1	0.0204	0.3462	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	NCIH211_LUNG	0.68	1	0.3666	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	HNRNPA3--AGPS	7	13	HNRNPA3	8713	chr2:178086861:+	AGPS	34005	chr2:178402802:+	INCL_NON_REF_SPLICE	YES	160	64	0.11	0.24	0.0713	0.1324	HNRNPA3->Oncogene{Bushman},chr2:178077291-178088686:+,heterogeneous_nuclear_ribonucleoprotein_A3,AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+	NCIH211_LUNG	0.11	0.24	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CASC9--RP11-300E4.2	8	1	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	42	0	0.18	1	0.0815	0.0102	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH211_LUNG	0.18	1	0.0917	TRUE	0	23	0	19	23	TRUE	ACH-000639
NCIH211_LUNG	TTC28--NUMA1	5	5	TTC28	13871	chr22:28497159:-	NUMA1	55011	chr11:71747021:-	ONLY_REF_SPLICE	YES	14	194	0.42	0.05	0.0509	0.0509	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1	NCIH211_LUNG	0.05	0.42	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	EEPD1--CAMK2B	5	2	EEPD1	3054	chr7:36194811:+	CAMK2B	24874	chr7:44302663:-	ONLY_REF_SPLICE	YES	37	1	0.16	0.88	0.0509	0.0204	EEPD1->chr7:36192758-36341152:+,endonuclease/exonuclease/phosphatase_family_domain_containing_1,CAMK2B->Oncogene{Bushman},calcium/calmodulin_dependent_protein_kinase_II_beta,chr7:44256749-44374176:-	NCIH211_LUNG	0.16	0.88	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	ANTXR1--LRRTM4	4	5	ANTXR1	10416	chr2:69318051:+	LRRTM4	40299	chr2:76976042:-	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0407	0.0509	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,LRRTM4->chr2:76974845-77820445:-,leucine_rich_repeat_transmembrane_neuronal_4	NCIH211_LUNG	0.6	1	0.0916	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	TTC28--NUMA1	3	5	TTC28	15001	chr22:28494903:-	NUMA1	55011	chr11:71747021:-	ONLY_REF_SPLICE	YES	7	194	0.53	0.04	0.0305	0.0509	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1	NCIH211_LUNG	0.04	0.53	0.0814	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	C6orf106--NQO2	3	4	C6orf106	3690	chr6:34622402:-	NQO2	16276	chr6:2994165:+	ONLY_REF_SPLICE	YES	120	0	0.06	1	0.0305	0.0407	C6orf106->chr6:34555065-34664636:-,chromosome_6_open_reading_frame_106,NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+	NCIH211_LUNG	0.06	1	0.0712	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	NUMA1--TTC28	4	0	NUMA1	1236	chr11:71791504:-	TTC28	56795	chr22:28492396:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	NCIH211_LUNG	1	1	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	AC074363.1--STK39	1	11	AC074363.1	2265	chr2:168346787:+	STK39	12797	chr2:168997268:-	ONLY_REF_SPLICE	YES	6	226	0.67	0.05	0.0102	0.112	AC074363.1->chr2:168149681-168414843:+,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	NCIH211_LUNG	0.05	0.67	0.1222	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	WDPCP--RP5-1198O20.4	2	6	WDPCP	11021	chr2:63714581:-	RP5-1198O20.4	53078	chr1:44541763:+	ONLY_REF_SPLICE	YES	17	2	0.32	0.8	0.0204	0.0611	WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,RP5-1198O20.4->chr1:44501798-44570647:+	NCIH211_LUNG	0.32	0.8	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	AC074363.1--B3GALT1	1	9	AC074363.1	2265	chr2:168346787:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	YES	6	0	0.62	1	0.0102	0.0916	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	NCIH211_LUNG	0.62	1	0.1018	TRUE	0	4	2	6	4	TRUE	ACH-000639
NCIH211_LUNG	WDPCP--KLF17	2	1	WDPCP	9973	chr2:63719990:-	KLF17	42690	chr1:44595025:+	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0204	0.0102	WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,KLF17->Kruppel-like_factor_17,chr1:44584522-44600812:+	NCIH211_LUNG	0.16	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	C6orf106--NQO2	2	0	C6orf106	4888	chr6:34614378:-	NQO2	22111	chr6:3006702:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	C6orf106->chr6:34555065-34664636:-,chromosome_6_open_reading_frame_106,NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CMTM4--CCDC79	2	0	CMTM4	1281	chr16:66730330:-	CCDC79	18754	chr16:66824922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:-:[58269],CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,CCDC79->chr16:66788879-66835523:-,coiled-coil_domain_containing_79	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CMTM4--CCDC79	2	0	CMTM4	1368	chr16:66730243:-	CCDC79	19050	chr16:66824626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:-:[58269],CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,CCDC79->chr16:66788879-66835523:-,coiled-coil_domain_containing_79	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CPQ--AB015752.3	2	0	CPQ	9826	chr8:97892233:+	AB015752.3	26928	chr8:91546854:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,AB015752.3->chr8:91546839-91632298:-	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CTD-2017D11.1--RPL23	2	0	CTD-2017D11.1	3885	chr19:24232350:+	RPL23	12091	chr17:37008985:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CTD-2017D11.1->chr19:24216247-24249711:+,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	DCK--GRSF1	2	0	DCK	3596	chr4:71863899:+	GRSF1	16290	chr4:71702031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,DCK->chr4:71858255-71896631:+,deoxycytidine_kinase,GRSF1->G-rich_RNA_sequence_binding_factor_1,chr4:71681499-71705662:-	NCIH211_LUNG	1	1	0.0204	TRUE	0	4	0	2	2	TRUE	ACH-000639
NCIH211_LUNG	FNBP4--NUP160	2	0	FNBP4	2468	chr11:47786822:-	NUP160	29772	chr11:47859175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:-:[10644],FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	6	0	TRUE	ACH-000639
NCIH211_LUNG	SHISA9--CPPED1	2	0	SHISA9	7683	chr16:13010672:+	CPPED1	23150	chr16:12798906:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_INVERSION:+:-:[97603],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,CPPED1->calcineurin_like_phosphoesterase_domain_containing_1,chr16:12756919-12897874:-	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	TXNIP--RPL23	2	0	TXNIP	1584	chr1:145439052:+	RPL23	8906	chr17:37009358:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	ZNF316--GLCCI1	2	0	ZNF316	1688	chr7:6677640:+	GLCCI1	15590	chr7:8043538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZNF316->chr7:6676953-6694242:+,zinc_finger_protein_316,GLCCI1->chr7:8008425-8133902:+,glucocorticoid_induced_1	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	WDPCP--RP5-1198O20.4	1	3	WDPCP	9973	chr2:63719990:-	RP5-1198O20.4	51952	chr1:44540510:+	ONLY_REF_SPLICE	YES	16	1	0.2	0.8	0.0102	0.0305	WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,RP5-1198O20.4->chr1:44501798-44570647:+	NCIH211_LUNG	0.2	0.8	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	C9orf3--SNAP91	1	2	C9orf3	3136	chr9:97523015:+	SNAP91	44165	chr6:84400155:-	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0102	0.0204	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	NCIH211_LUNG	0.38	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	C9orf3--SNAP91	1	2	C9orf3	3136	chr9:97523015:+	SNAP91	48885	chr6:84375300:-	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0102	0.0204	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	NCIH211_LUNG	0.43	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	C9orf3--SNAP91	1	2	C9orf3	2983	chr9:97522862:+	SNAP91	48885	chr6:84375300:-	ONLY_REF_SPLICE	YES	1	4	0.75	0.43	0.0102	0.0204	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	NCIH211_LUNG	0.43	0.75	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	918	132	IGH@	93981	chr14:106330797:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	1	23	1	0.98	7.9424	1.142	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	9.0844	TRUE	0	0	0	3	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	246	207	IGH@	95370	chr14:106329408:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	1	23	1	0.95	2.1284	1.7909	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	3.9193	TRUE	0	0	0	3	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	100	145	IGH@	94353	chr14:106330425:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	1	23	1	0.91	0.8652	1.2545	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	2.1197	TRUE	0	0	0	3	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	95	153	IGH@	94754	chr14:106330024:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	1	23	1	0.92	0.8219	1.3237	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	2.1456	TRUE	0	0	0	3	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCO2--CHKB	68	33	SCO2	3704	chr22:50962148:-	CHKB	10590	chr22:51019000:-	INCL_NON_REF_SPLICE	YES	51	55	0.66	0.65	0.5883	0.2855	LOCAL_REARRANGEMENT:-:[52510],SCO2->SCO2_cytochrome_c_oxidase_assembly_protein,chr22:50961997-50964868:-,CHKB->choline_kinase_beta,chr22:51017378-51039884:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.66	0.8738	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	30	132	IGH@	93161	chr14:106331617:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	NO	2	23	0.99	0.88	0.2596	1.142	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.99	1.4016	TRUE	0	0	0	3	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCO2--CHKB	45	27	SCO2	3709	chr22:50962143:-	CHKB	10743	chr22:51018847:-	INCL_NON_REF_SPLICE	YES	47	64	0.61	0.53	0.3893	0.2336	LOCAL_REARRANGEMENT:-:[52510],SCO2->SCO2_cytochrome_c_oxidase_assembly_protein,chr22:50961997-50964868:-,CHKB->choline_kinase_beta,chr22:51017378-51039884:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.61	0.6229	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	27	33	IGH@	93981	chr14:106330797:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	527	0.98	0.1	0.2336	0.2855	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.98	0.5191	TRUE	0	0	0	5	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	132	IGH@	93369	chr14:106331409:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	NO	2	23	0.99	0.85	0.0087	1.142	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.99	1.1507	TRUE	0	0	0	3	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XPO1--CCT4	24	7	XPO1	10272	chr2:61729131:-	CCT4	35743	chr2:62107529:-	ONLY_REF_SPLICE	YES	79	348	0.28	0.08	0.2076	0.0606	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Lymphoid=1},XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.28	0.2682	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	9	50	IGH@	95370	chr14:106329408:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	527	0.98	0.1	0.0779	0.4326	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.98	0.5105	TRUE	0	0	0	6	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCO2--CHKB	14	8	SCO2	3705	chr22:50962147:-	CHKB	11648	chr22:51017942:-	INCL_NON_REF_SPLICE	YES	51	103	0.3	0.18	0.1211	0.0692	LOCAL_REARRANGEMENT:-:[52510],SCO2->SCO2_cytochrome_c_oxidase_assembly_protein,chr22:50961997-50964868:-,CHKB->choline_kinase_beta,chr22:51017378-51039884:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.3	0.1903	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	15	1	IGH@	93981	chr14:106330797:-	WHSC1	146292	chr4:1936871:+	ONLY_REF_SPLICE	YES	1	393	0.94	0.04	0.1298	0.0087	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.94	0.1385	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1GALT1C1--DNAH11	14	4	C1GALT1C1	1234	chrX:119763772:-	DNAH11	37720	chr7:21721164:+	ONLY_REF_SPLICE	YES	99	0	0.15	1	0.1211	0.0346	C1GALT1C1->C1GALT1_specific_chaperone_1,chrX:119759648-119764005:-,DNAH11->chr7:21582833-21941457:+,dynein_axonemal_heavy_chain_11	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.1557	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	56	IGH@	95370	chr14:106329408:-	WHSC1	140829	chr4:1913818:+	ONLY_REF_SPLICE	YES	1	561	0.98	0.09	0.0087	0.4845	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.98	0.4932	TRUE	0	0	0	2	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	4	36	IGH@	94754	chr14:106330024:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	527	0.98	0.07	0.0346	0.3115	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.98	0.3461	TRUE	0	0	0	6	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	2	34	IGH@	94353	chr14:106330425:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	527	0.97	0.06	0.0173	0.2942	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.97	0.3115	TRUE	0	0	0	5	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCO2--CHKB	7	10	SCO2	3707	chr22:50962145:-	CHKB	11355	chr22:51018235:-	INCL_NON_REF_SPLICE	YES	49	69	0.26	0.2	0.0606	0.0865	LOCAL_REARRANGEMENT:-:[52510],SCO2->SCO2_cytochrome_c_oxidase_assembly_protein,chr22:50961997-50964868:-,CHKB->choline_kinase_beta,chr22:51017378-51039884:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.26	0.1471	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	33	IGH@	93161	chr14:106331617:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	2	527	0.94	0.06	0.0087	0.2855	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.94	0.2942	TRUE	0	0	0	5	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	5	14	AP003900.6	1122	chr21:11169841:+	AC011718.2	10100	chr22:20656924:-	INCL_NON_REF_SPLICE	YES	4	0	0.83	1	0.0433	0.1211	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.1644	TRUE	0	0	0	11	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP128--SEL1L	4	0	CEP128	13431	chr14:81362062:-	SEL1L	44906	chr14:81994082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALS2--SUCLG1	2	0	ALS2	8876	chr2:202625604:-	SUCLG1	58731	chr2:84650896:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	ALS2->ALS2,_alsin_Rho_guanine_nucleotide_exchange_factor,chr2:202565277-202645912:-,SUCLG1->chr2:84650647-84687169:-,succinate-CoA_ligase_alpha_subunit	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--GABPB2	2	0	C17orf76-AS1	1593	chr17:16342728:+	GABPB2	15711	chr1:151060666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	C17orf76-AS1->chr17:16342136-16381992:+,GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CYTH4--TGFB1	2	0	CYTH4	1562	chr22:37678629:+	TGFB1	28986	chr19:41838186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CYTH4->chr22:37678068-37711382:+,cytohesin_4,TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HINT1--CTC-228N24.3	2	0	HINT1	2556	chr5:130500753:-	CTC-228N24.3	24348	chr5:127292613:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	HINT1->chr5:130494720-130507428:-,histidine_triad_nucleotide_binding_protein_1,CTC-228N24.3->chr5:127276118-127418864:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OSTF1--C9orf41	2	0	OSTF1	1184	chr9:77703642:+	C9orf41	16635	chr9:77632364:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	LOCAL_INVERSION:+:-:[60120],OSTF1->chr9:77703459-77762181:+,osteoclast_stimulating_factor_1,C9orf41->chr9:77595936-77643339:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-400D2.2--IVNS1ABP	2	0	RP11-400D2.2	1216	chr4:135248413:-	IVNS1ABP	15418	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	RP11-400D2.2->chr4:135176328-135248628:-,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPATS2--IGL@	2	0	SPATS2	2004	chr12:49761370:+	IGL@	90227	chr22:23237555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,IGL@->Oncogene{Bushman}	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUPT3H--CDC5L	2	0	SUPT3H	7183	chr6:45073659:-	CDC5L	37448	chr6:44413392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,CDC5L->cell_division_cycle_5_like,chr6:44355262-44418163:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
A253_SALIVARY_GLAND	CNOT7--VPS13B	83	46	CNOT7	1204	chr8:17104184:-	VPS13B	72194	chr8:100821603:+	ONLY_REF_SPLICE	YES	464	8	0.22	0.94	0.9986	0.5534	CNOT7->CCR4-NOT_transcription_complex_subunit_7,chr8:17086737-17104387:-,VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast)	A253_SALIVARY_GLAND	0.22	0.94	1.552	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	PABPC1--KRT14	12	0	PABPC1	2002	chr8:101734036:-	KRT14	18384	chr17:39743147:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1444	0	GTEx&tcga_normals:1/3694=0.03%,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,KRT14->chr17:39738531-39743173:-,keratin_14	A253_SALIVARY_GLAND	1	1	0.1444	TRUE	0	0	0	4	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	PCM1--FGL1	9	6	PCM1	1349	chr8:17780697:+	FGL1	51451	chr8:17753925:-	ONLY_REF_SPLICE	YES	76	0	0.16	1	0.1083	0.0722	LOCAL_INVERSION:+:-:[12475],PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1,FGL1->chr8:17721889-17767874:-,fibrinogen_like_1	A253_SALIVARY_GLAND	0.16	1	0.1805	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	MYO10--RICTOR	8	8	MYO10	1476	chr5:16935897:-	RICTOR	53813	chr5:39021238:-	ONLY_REF_SPLICE	YES	186	14	0.08	0.53	0.0963	0.0963	MYO10->chr5:16665395-16936372:-,myosin_X,RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-	A253_SALIVARY_GLAND	0.08	0.53	0.1926	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	MLX--ATP6V0A1	6	0	MLX	5277	chr17:40723725:+	ATP6V0A1	18329	chr17:40630481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	LOCAL_REARRANGEMENT:+:[44457],MLX->MLX,_MAX_dimerization_protein,chr17:40719086-40725257:+,ATP6V0A1->ATPase_H+_transporting_V0_subunit_a1,chr17:40610862-40674629:+	A253_SALIVARY_GLAND	1	1	0.0722	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	ENO3--RNF167	4	0	ENO3	6754	chr17:4857140:+	RNF167	13520	chr17:4843782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0481	0	LOCAL_REARRANGEMENT:+:[2870],ENO3->chr17:4851387-4860426:+,enolase_3,RNF167->chr17:4843303-4848517:+,ring_finger_protein_167	A253_SALIVARY_GLAND	1	1	0.0481	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	CD44--PDHX	3	0	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0361	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	A253_SALIVARY_GLAND	1	1	0.0361	TRUE	0	7	0	19	1	TRUE	ACH-000740
A253_SALIVARY_GLAND	DNAJC24--ARL14EP	2	0	DNAJC24	2020	chr11:31392406:+	ARL14EP	25368	chr11:30352433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,ARL14EP->ADP_ribosylation_factor_like_GTPase_14_effector_protein,chr11:30344598-30359774:+	A253_SALIVARY_GLAND	1	1	0.0241	TRUE	0	1	0	2	1	TRUE	ACH-000740
A253_SALIVARY_GLAND	FBRSL1--RP11-503G7.1	2	0	FBRSL1	2311	chr12:133067447:+	RP11-503G7.1	28918	chr12:133035820:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	LOCAL_REARRANGEMENT:+:[29527],FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,RP11-503G7.1->chr12:133033746-133036610:+	A253_SALIVARY_GLAND	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	KDM5B--ZNF718	2	0	KDM5B	8265	chr1:202742246:-	ZNF718	41237	chr4:154702:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,ZNF718->chr4:124386-157779:+,zinc_finger_protein_718	A253_SALIVARY_GLAND	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	KIAA0753--SPIN1	2	0	KIAA0753	20990	chr17:6493099:-	SPIN1	32034	chr9:91041297:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	KIAA0753->KIAA0753,chr17:6481468-6544247:-,SPIN1->chr9:91003334-91093609:+,spindlin_1	A253_SALIVARY_GLAND	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	MRPS21--SETDB1	2	0	MRPS21	1581	chr1:150266869:+	SETDB1	22522	chr1:150933039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	MRPS21->chr1:150266289-150281414:+,mitochondrial_ribosomal_protein_S21,SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+	A253_SALIVARY_GLAND	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	SIRT2--KIF15	2	0	SIRT2	11167	chr19:39371325:-	KIF15	44876	chr3:44882566:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	SIRT2->chr19:39369197-39390502:-,sirtuin_2,KIF15->chr3:44803209-44914868:+,kinesin_family_member_15	A253_SALIVARY_GLAND	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000740
ISTMES2_PLEURA	PKM--PPIA	7	0	PKM	16758	chr15:72494872:-	PPIA	23273	chr7:44836291:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1041	0	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	ISTMES2_PLEURA	1	1	0.1041	TRUE	0	0	0	18	0	TRUE	ACH-000331
ISTMES2_PLEURA	PBX3--MAPKAP1	3	0	PBX3	2279	chr9:128510902:+	MAPKAP1	46938	chr9:128206877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	ISTMES2_PLEURA	1	1	0.0446	TRUE	0	0	0	2	0	TRUE	ACH-000331
ISTMES2_PLEURA	SFPQ--EPS15L1	2	0	SFPQ	7033	chr1:35652602:-	EPS15L1	46618	chr19:16472795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1	ISTMES2_PLEURA	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000331
ISTMES2_PLEURA	SPPL2A--AP4E1	2	0	SPPL2A	8343	chr15:51028298:-	AP4E1	41478	chr15:51293223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	SPPL2A->chr15:50999506-51058005:-,signal_peptide_peptidase_like_2A,AP4E1->adaptor_related_protein_complex_4_epsilon_1_subunit,chr15:51200869-51298097:+	ISTMES2_PLEURA	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000331
ISTMES2_PLEURA	ZNF519--RPLP0	2	0	ZNF519	2343	chr18:14124349:-	RPLP0	26269	chr12:120635265:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	ISTMES2_PLEURA	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000331
NCIH2030_LUNG	CCDC57--RP11-332O19.5	123	10	CCDC57	1044	chr17:80170663:-	RP11-332O19.5	41999	chr10:105005874:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.94	1.163	0.0946	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,RP11-332O19.5->chr10:105005644-105007773:+	NCIH2030_LUNG	0.94	1	1.2576	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	CARS--DCHS1	93	9	CARS	8831	chr11:3059280:-	DCHS1	33589	chr11:6655537:-	ONLY_REF_SPLICE	YES	43	0	0.7	1	0.8793	0.0851	CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase,DCHS1->chr11:6642556-6677085:-,dachsous_cadherin-related_1	NCIH2030_LUNG	0.7	1	0.9644	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	CCDC57--RP11-332O19.5	9	7	CCDC57	1045	chr17:80170662:-	RP11-332O19.5	42080	chr10:105005955:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.89	0.0851	0.0662	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,RP11-332O19.5->chr10:105005644-105007773:+	NCIH2030_LUNG	0.89	1	0.1513	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	PSKH1--ZC3H14	9	3	PSKH1	4241	chr16:67943609:+	ZC3H14	11720	chr14:89029995:+	ONLY_REF_SPLICE	YES	49	147	0.2	0.08	0.0851	0.0284	PSKH1->chr16:67927175-67963581:+,protein_serine_kinase_H1,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	NCIH2030_LUNG	0.08	0.2	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	USP10--COTL1	9	0	USP10	1134	chr16:84733717:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0851	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	NCIH2030_LUNG	1	1	0.0851	TRUE	0	0	0	7	0	TRUE	ACH-000521
NCIH2030_LUNG	GOLGA5--CYP46A1	8	1	GOLGA5	6106	chr14:93276722:+	CYP46A1	23179	chr14:100165803:+	ONLY_REF_SPLICE	YES	65	0	0.12	1	0.0756	0.0095	GOLGA5->Oncogene{Bushman},chr14:93260576-93306308:+,golgin_A5,CYP46A1->chr14:100150641-100193638:+,cytochrome_P450_family_46_subfamily_A_member_1	NCIH2030_LUNG	0.12	1	0.0851	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	EIF1--PPIA	4	0	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	NCIH2030_LUNG	1	1	0.0378	TRUE	0	0	0	7	0	TRUE	ACH-000521
NCIH2030_LUNG	CCDC81--C11orf73	3	0	CCDC81	11284	chr11:86120407:+	C11orf73	23280	chr11:86017287:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[28809],CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81,C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73	NCIH2030_LUNG	1	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	MYL6--AKT2	3	0	MYL6	2462	chr12:56553406:+	AKT2	22125	chr19:40761176:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	GTEx&tcga_normals:1/3694=0.03%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	NCIH2030_LUNG	1	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	RP11-640M9.1--SRGAP2B	3	0	RP11-640M9.1	2197	chr1:144520774:-	SRGAP2B	24229	chr1:143915700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	RP11-640M9.1->chr1:144456138-144521970:-,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	NCIH2030_LUNG	1	1	0.0284	TRUE	0	0	0	2	0	TRUE	ACH-000521
NCIH2030_LUNG	BMPR1B--PDLIM5	2	0	BMPR1B	2171	chr4:95797051:+	PDLIM5	46461	chr4:95539155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_FI:{Muscle=[count:3=pct:1.3]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:+:[89742],BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+,PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+	NCIH2030_LUNG	1	1	0.0189	TRUE	0	2	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	CPS1--CFLAR-AS1	2	0	CPS1	25002	chr2:211477017:+	CFLAR-AS1	55254	chr2:202015982:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+,CFLAR-AS1->CFLAR_antisense_RNA_1,chr2:202005007-202022546:-	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	CRIM1--FEZ2	2	0	CRIM1	21418	chr2:36764689:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	NCIH2030_LUNG	1	1	0.0189	TRUE	1	4	0	11	0	TRUE	ACH-000521
NCIH2030_LUNG	CYP24A1--DAP3	2	0	CYP24A1	10936	chr20:52773708:-	DAP3	31914	chr1:155708400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NCIH2030_LUNG	1	1	0.0189	TRUE	0	1	0	3	0	TRUE	ACH-000521
NCIH2030_LUNG	MYL6--RPL30	2	0	MYL6	2462	chr12:56553406:+	RPL30	10407	chr8:99057627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:2/3694=0.05%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	2	0	TRUE	ACH-000521
NCIH2030_LUNG	PFDN5--RNF167	2	0	PFDN5	1651	chr12:53689725:+	RNF167	12528	chr17:4847853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PFDN5->chr12:53689075-53693234:+,prefoldin_subunit_5,RNF167->chr17:4843303-4848517:+,ring_finger_protein_167	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	PTPRG--FLNB	2	0	PTPRG	1804	chr3:61548046:+	FLNB	48974	chr3:58062773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	RNF40--TKT	2	0	RNF40	10214	chr16:30783511:+	TKT	29234	chr3:53263452:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RNF40->chr16:30773066-30787628:+,ring_finger_protein_40,TKT->chr3:53258723-53290068:-,transketolase	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	RP11-640M9.1--SRGAP2B	2	0	RP11-640M9.1	3158	chr1:144519813:-	SRGAP2B	25838	chr1:144013901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RP11-640M9.1->chr1:144456138-144521970:-,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	RP11-640M9.1--SRGAP2B	2	0	RP11-640M9.1	3158	chr1:144519813:-	SRGAP2B	24229	chr1:143915700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RP11-640M9.1->chr1:144456138-144521970:-,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	2	0	TRUE	ACH-000521
NCIH2030_LUNG	RP11-275N1.1--NEBL	1	2	RP11-275N1.1	4358	chr10:21643600:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0095	0.0189	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	NCIH2030_LUNG	0.75	1	0.0284	TRUE	0	0	0	2	0	TRUE	ACH-000521
RH18_SOFT_TISSUE	VDR--CACNA2D4	1092	507	VDR	5027	chr12:48276477:-	CACNA2D4	44232	chr12:1919753:-	ONLY_REF_SPLICE	YES	283	3	0.85	1	10.4399	4.8471	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.85	1	15.287	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	308	398	VDR	5027	chr12:48276477:-	CACNA2D4	44479	chr12:1919506:-	ONLY_REF_SPLICE	YES	283	27	0.71	0.96	2.9446	3.805	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.71	0.96	6.7496	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CCT2--MYRFL	310	100	CCT2	7973	chr12:69987393:+	MYRFL	33996	chr12:70345893:+	ONLY_REF_SPLICE	YES	5841	18	0.07	0.96	2.9637	0.956	CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+,MYRFL->chr12:70219084-70352877:+,myelin_regulatory_factor-like	RH18_SOFT_TISSUE	0.07	0.96	3.9197	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	R3HDM2--LRP1	243	14	R3HDM2	1286	chr12:57824503:-	LRP1	83207	chr12:57598892:+	ONLY_REF_SPLICE	YES	2	495	0.99	0.34	2.3232	0.1338	LOCAL_INVERSION:-:+:[36258],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,LRP1->LDL_receptor_related_protein_1,chr12:57522276-57607134:+	RH18_SOFT_TISSUE	0.34	0.99	2.457	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	209	100	FRS2	1182	chr12:69864310:+	MARS	26756	chr12:57881720:+	ONLY_REF_SPLICE	YES	540	8	0.36	0.97	1.9981	0.956	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.36	0.97	2.9541	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	80	521	VDR	5027	chr12:48276477:-	CACNA2D4	43170	chr12:1920889:-	ONLY_REF_SPLICE	YES	283	37	0.68	0.94	0.7648	4.981	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.68	0.94	5.7458	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	PLD3--CTC-490E21.13	179	55	PLD3	7024	chr19:40876144:+	CTC-490E21.13	17426	chr19:41416592:-	ONLY_REF_SPLICE	YES	483	0	0.33	1	1.7113	0.5258	PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,CTC-490E21.13->chr19:41414377-41416754:-	RH18_SOFT_TISSUE	0.33	1	2.2371	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	130	68	FRS2	1182	chr12:69864310:+	RAB3IP	37080	chr12:70206744:+	ONLY_REF_SPLICE	YES	540	215	0.27	0.48	1.2428	0.6501	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.27	0.48	1.8929	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CNOT2--LRTM2	83	71	CNOT2	3472	chr12:70672054:+	LRTM2	38903	chr12:1936576:+	ONLY_REF_SPLICE	YES	177	5	0.47	0.97	0.7935	0.6788	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,LRTM2->chr12:1929433-1945918:+,leucine-rich_repeats_and_transmembrane_domains_2	RH18_SOFT_TISSUE	0.47	0.97	1.4723	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CNOT2--LRTM2	71	75	CNOT2	3472	chr12:70672054:+	LRTM2	38900	chr12:1936573:+	ONLY_REF_SPLICE	YES	177	7	0.45	0.95	0.6788	0.717	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,LRTM2->chr12:1929433-1945918:+,leucine-rich_repeats_and_transmembrane_domains_2	RH18_SOFT_TISSUE	0.45	0.95	1.3958	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	RP1-197B17.3--SENP1	70	4	RP1-197B17.3	1079	chr12:48099946:+	SENP1	20013	chr12:48482743:-	ONLY_REF_SPLICE	YES	0	18	1	0.8	0.6692	0.0382	RP1-197B17.3->chr12:48099868-48136077:+,SENP1->SUMO1/sentrin_specific_peptidase_1,chr12:48436681-48500091:-	RH18_SOFT_TISSUE	0.8	1	0.7074	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--BEST3	61	36	FRS2	1182	chr12:69864310:+	BEST3	32716	chr12:70072673:-	ONLY_REF_SPLICE	YES	540	67	0.15	0.59	0.5832	0.3442	LOCAL_INVERSION:+:-:[63578],FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,BEST3->bestrophin_3,chr12:70037140-70093256:-	RH18_SOFT_TISSUE	0.15	0.59	0.9274	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	51	76	FRS2	1182	chr12:69864310:+	RAB3IP	36894	chr12:70206558:+	ONLY_REF_SPLICE	YES	540	119	0.19	0.52	0.4876	0.7266	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.19	0.52	1.2142	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	17	212	VDR	5027	chr12:48276477:-	CACNA2D4	46967	chr12:1910284:-	ONLY_REF_SPLICE	YES	283	180	0.45	0.56	0.1625	2.0268	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.45	0.56	2.1893	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	NUP107--BEST3	40	26	NUP107	4643	chr12:69084526:+	BEST3	38243	chr12:70078388:-	ONLY_REF_SPLICE	YES	368	88	0.15	0.43	0.3824	0.2486	NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa,BEST3->bestrophin_3,chr12:70037140-70093256:-	RH18_SOFT_TISSUE	0.15	0.43	0.631	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CCNT1--RP11-320P7.2	38	8	CCNT1	4800	chr12:49094796:-	RP11-320P7.2	19488	chr12:70593513:+	ONLY_REF_SPLICE	YES	577	1	0.07	0.98	0.3633	0.0765	CCNT1->Oncogene{Bushman},chr12:49082247-49110681:-,cyclin_T1,RP11-320P7.2->chr12:70574118-70595784:+	RH18_SOFT_TISSUE	0.07	0.98	0.4398	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	9	102	FRS2	1182	chr12:69864310:+	MARS	26205	chr12:57881169:+	ONLY_REF_SPLICE	YES	540	2	0.17	0.98	0.086	0.9752	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.17	0.98	1.0612	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	4	109	FRS2	4453	chr12:69885431:+	MARS	26205	chr12:57881169:+	ONLY_REF_SPLICE	YES	733	2	0.13	0.98	0.0382	1.0421	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.13	0.98	1.0803	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	2	107	FRS2	4453	chr12:69885431:+	MARS	26756	chr12:57881720:+	ONLY_REF_SPLICE	NO	733	8	0.13	0.93	0.0191	1.023	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.13	0.93	1.0421	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	3	102	FRS2	2243	chr12:69874139:+	MARS	26756	chr12:57881720:+	ONLY_REF_SPLICE	YES	749	8	0.12	0.93	0.0287	0.9752	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.12	0.93	1.0039	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CCNT1--RP11-89H19.1	25	13	CCNT1	2466	chr12:49108226:-	RP11-89H19.1	20788	chr12:48292128:+	ONLY_REF_SPLICE	YES	624	2	0.06	0.95	0.239	0.1243	CCNT1->Oncogene{Bushman},chr12:49082247-49110681:-,cyclin_T1,RP11-89H19.1->chr12:48276432-48295308:+	RH18_SOFT_TISSUE	0.06	0.95	0.3633	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	QKI--CCNT1	23	15	QKI	2336	chr6:163836367:+	CCNT1	33362	chr12:49099679:-	ONLY_REF_SPLICE	YES	92	631	0.29	0.06	0.2199	0.1434	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,CCNT1->Oncogene{Bushman},chr12:49082247-49110681:-,cyclin_T1	RH18_SOFT_TISSUE	0.06	0.29	0.3633	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	5	85	FRS2	4453	chr12:69885431:+	RAB3IP	36894	chr12:70206558:+	ONLY_REF_SPLICE	YES	734	119	0.11	0.43	0.0478	0.8126	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.11	0.43	0.8604	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	7	76	FRS2	2243	chr12:69874139:+	RAB3IP	36894	chr12:70206558:+	ONLY_REF_SPLICE	YES	750	119	0.1	0.41	0.0669	0.7266	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.1	0.41	0.7935	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	6	75	FRS2	4453	chr12:69885431:+	RAB3IP	37080	chr12:70206744:+	ONLY_REF_SPLICE	YES	734	215	0.1	0.27	0.0574	0.717	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.1	0.27	0.7744	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	PGP--MLST8	24	3	PGP	3855	chr16:2261954:-	MLST8	9176	chr16:2256613:+	INCL_NON_REF_SPLICE	YES	0	56	1	0.33	0.2294	0.0287	LOCAL_INVERSION:-:+:[2581],PGP->chr16:2261998-2264808:-,phosphoglycolate_phosphatase,MLST8->MTOR_associated_protein,_LST8_homolog,chr16:2254249-2259417:+	RH18_SOFT_TISSUE	0.33	1	0.2581	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	6	74	FRS2	4429	chr12:69885407:+	RAB3IP	37080	chr12:70206744:+	INCL_NON_REF_SPLICE	YES	733	215	0.1	0.27	0.0574	0.7075	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.1	0.27	0.7649	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	5	71	FRS2	3339	chr12:69880077:+	RAB3IP	37080	chr12:70206744:+	ONLY_REF_SPLICE	YES	743	215	0.09	0.26	0.0478	0.6788	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.09	0.26	0.7266	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CNOT2--LRTM2	3	77	CNOT2	7136	chr12:70688074:+	LRTM2	38900	chr12:1936573:+	ONLY_REF_SPLICE	YES	85	7	0.48	0.92	0.0287	0.7361	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,LRTM2->chr12:1929433-1945918:+,leucine-rich_repeats_and_transmembrane_domains_2	RH18_SOFT_TISSUE	0.48	0.92	0.7648	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	3	76	FRS2	1189	chr12:69864317:+	RAB3IP	36894	chr12:70206558:+	INCL_NON_REF_SPLICE	YES	747	119	0.1	0.4	0.0287	0.7266	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.1	0.4	0.7553	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CNOT2--LRTM2	3	73	CNOT2	7136	chr12:70688074:+	LRTM2	38903	chr12:1936576:+	ONLY_REF_SPLICE	YES	85	5	0.47	0.94	0.0287	0.6979	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,LRTM2->chr12:1929433-1945918:+,leucine-rich_repeats_and_transmembrane_domains_2	RH18_SOFT_TISSUE	0.47	0.94	0.7266	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	1	80	FRS2	3339	chr12:69880077:+	RAB3IP	36894	chr12:70206558:+	ONLY_REF_SPLICE	YES	743	119	0.1	0.41	0.0096	0.7648	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.1	0.41	0.7744	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	19	7	VDR	2272	chr12:48298738:-	CACNA2D4	44232	chr12:1919753:-	ONLY_REF_SPLICE	YES	1	3	0.96	0.9	0.1816	0.0669	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.9	0.96	0.2485	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CNOT2--LRTM2	17	6	CNOT2	3472	chr12:70672054:+	LRTM2	42300	chr12:1943433:+	ONLY_REF_SPLICE	YES	177	100	0.12	0.19	0.1625	0.0574	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,LRTM2->chr12:1929433-1945918:+,leucine-rich_repeats_and_transmembrane_domains_2	RH18_SOFT_TISSUE	0.12	0.19	0.2199	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	1	68	FRS2	2243	chr12:69874139:+	RAB3IP	37080	chr12:70206744:+	ONLY_REF_SPLICE	NO	750	215	0.08	0.24	0.0096	0.6501	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.08	0.24	0.6597	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	5	49	VDR	3785	chr12:48293620:-	CACNA2D4	44232	chr12:1919753:-	ONLY_REF_SPLICE	YES	64	3	0.46	0.95	0.0478	0.4685	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.46	0.95	0.5163	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	DHRS7--EIF2S1	14	11	DHRS7	3289	chr14:60631895:-	EIF2S1	16619	chr14:67831484:+	ONLY_REF_SPLICE	YES	313	92	0.07	0.21	0.1338	0.1052	DHRS7->chr14:60610838-60636574:-,dehydrogenase/reductase_(SDR_family)_member_7,EIF2S1->chr14:67826714-67853233:+,eukaryotic_translation_initiation_factor_2_subunit_alpha	RH18_SOFT_TISSUE	0.07	0.21	0.239	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--BEST3	6	37	FRS2	2243	chr12:69874139:+	BEST3	32716	chr12:70072673:-	ONLY_REF_SPLICE	YES	749	67	0.05	0.39	0.0574	0.3537	LOCAL_INVERSION:+:-:[63578],FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,BEST3->bestrophin_3,chr12:70037140-70093256:-	RH18_SOFT_TISSUE	0.05	0.39	0.4111	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	4	43	FRS2	1182	chr12:69864310:+	MARS	26849	chr12:57881813:+	INCL_NON_REF_SPLICE	YES	540	22	0.08	0.68	0.0382	0.4111	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.08	0.68	0.4493	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	13	6	VDR	2272	chr12:48298738:-	CACNA2D4	44479	chr12:1919506:-	ONLY_REF_SPLICE	YES	1	27	0.95	0.41	0.1243	0.0574	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.41	0.95	0.1817	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--BEST3	3	37	FRS2	4429	chr12:69885407:+	BEST3	32716	chr12:70072673:-	INCL_NON_REF_SPLICE	YES	732	67	0.05	0.37	0.0287	0.3537	LOCAL_INVERSION:+:-:[63578],FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,BEST3->bestrophin_3,chr12:70037140-70093256:-	RH18_SOFT_TISSUE	0.05	0.37	0.3824	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CCNT1--RP11-89H19.1	8	15	CCNT1	2466	chr12:49108226:-	RP11-89H19.1	19351	chr12:48290390:+	ONLY_REF_SPLICE	YES	624	0	0.04	1	0.0765	0.1434	CCNT1->Oncogene{Bushman},chr12:49082247-49110681:-,cyclin_T1,RP11-89H19.1->chr12:48276432-48295308:+	RH18_SOFT_TISSUE	0.04	1	0.2199	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	2	38	VDR	3785	chr12:48293620:-	CACNA2D4	44479	chr12:1919506:-	ONLY_REF_SPLICE	YES	64	27	0.38	0.6	0.0191	0.3633	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.38	0.6	0.3824	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	ZNF776--NLRP4	9	7	ZNF776	8323	chr19:58268366:+	NLRP4	19766	chr19:56379075:+	INCL_NON_REF_SPLICE	YES	13	0	0.55	1	0.086	0.0669	ZNF776->chr19:58258164-58269527:+,zinc_finger_protein_776,NLRP4->NLR_family,_pyrin_domain_containing_4,chr19:56347944-56393220:+	RH18_SOFT_TISSUE	0.55	1	0.1529	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	NUP107--BEST3	4	25	NUP107	4643	chr12:69084526:+	BEST3	38247	chr12:70078384:-	INCL_NON_REF_SPLICE	YES	368	88	0.07	0.25	0.0382	0.239	NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa,BEST3->bestrophin_3,chr12:70037140-70093256:-	RH18_SOFT_TISSUE	0.07	0.25	0.2772	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	TTLL5--RP11-611E13.2	9	5	TTLL5	30515	chr14:76224212:+	RP11-611E13.2	59305	chr12:70298199:-	ONLY_REF_SPLICE	YES	17	0	0.45	1	0.086	0.0478	TTLL5->chr14:76099968-76421421:+,tubulin_tyrosine_ligase_like_5,RP11-611E13.2->chr12:70297813-70637140:-	RH18_SOFT_TISSUE	0.45	1	0.1338	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	RP11-89H19.1--MDM2	8	0	RP11-89H19.1	1064	chr12:48276495:+	MDM2	10411	chr12:69207334:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0765	0	RP11-89H19.1->chr12:48276432-48295308:+,MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+	RH18_SOFT_TISSUE	1	1	0.0765	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	2	17	VDR	2663	chr12:48298347:-	CACNA2D4	44232	chr12:1919753:-	ONLY_REF_SPLICE	YES	15	3	0.56	0.86	0.0191	0.1625	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.56	0.86	0.1816	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	HELZ--TNRC6C	5	1	HELZ	14505	chr17:65184435:-	TNRC6C	51790	chr17:76000251:+	INCL_NON_REF_SPLICE	YES	31	0	0.16	1	0.0478	0.0096	HELZ->chr17:65066554-65242105:-,helicase_with_zinc_finger,TNRC6C->chr17:76000249-76104916:+,trinucleotide_repeat_containing_6C	RH18_SOFT_TISSUE	0.16	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CDH13--PLCG2	5	0	CDH13	1335	chr16:82660742:+	PLCG2	50670	chr16:81914515:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0478	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,PLCG2->ArcherDX_panel,FoundationOne_panel,chr16:81772702-81991899:+,phospholipase_C_gamma_2	RH18_SOFT_TISSUE	1	1	0.0478	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	EDF1--TPRN	4	0	EDF1	2690	chr9:139757740:-	TPRN	13208	chr9:140087143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0	{Klijn_CCL:Colo-Rectal=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,TPRN->chr9:140086069-140098645:-,taperin	RH18_SOFT_TISSUE	1	1	0.0382	TRUE	0	4	0	4	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	TSEN15--CACNA1E	3	3	TSEN15	2724	chr1:184023997:+	CACNA1E	13176	chr1:181452880:+	ONLY_REF_SPLICE	YES	84	0	0.07	1	0.0287	0.0287	TSEN15->chr1:184020811-184043346:+,tRNA_splicing_endonuclease_subunit_15,CACNA1E->calcium_voltage-gated_channel_subunit_alpha1_E,chr1:181382238-181777219:+	RH18_SOFT_TISSUE	0.07	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CTB-113P19.1--FTL	3	2	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.0191	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	RH18_SOFT_TISSUE	1	1	0.0478	TRUE	0	2	0	13	2	TRUE	ACH-000689
RH18_SOFT_TISSUE	DCTN2--SLC35E3	3	0	DCTN2	8939	chr12:57928839:-	SLC35E3	27626	chr12:69187068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	DCTN2->chr12:57923885-57941114:-,dynactin_subunit_2,SLC35E3->chr12:69139886-69187508:+,solute_carrier_family_35_member_E3	RH18_SOFT_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	3	0	FRS2	1182	chr12:69864310:+	MARS	30727	chr12:57892203:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	1	7	VDR	2272	chr12:48298738:-	CACNA2D4	43170	chr12:1920889:-	ONLY_REF_SPLICE	YES	1	37	0.89	0.18	0.0096	0.0669	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.18	0.89	0.0765	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	DYRK1A--HLCS	2	0	DYRK1A	7496	chr21:38792686:+	HLCS	43170	chr21:38139586:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A,HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase	RH18_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	EDF1--EXD3	2	0	EDF1	2690	chr9:139757740:-	EXD3	8013	chr9:140289856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3	RH18_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	INTS1--GLI4	2	0	INTS1	16610	chr7:1526261:-	GLI4	36806	chr8:144351530:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	INTS1->chr7:1509913-1545489:-,integrator_complex_subunit_1,GLI4->GLI_family_zinc_finger_4,Oncogene{Bushman},chr8:144349603-144359101:+	RH18_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	PLD3--CTC-490E21.13	2	0	PLD3	1313	chr19:40854675:+	CTC-490E21.13	17426	chr19:41416592:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,CTC-490E21.13->chr19:41414377-41416754:-	RH18_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	STC2--SP1	2	0	STC2	2461	chr5:172755046:-	SP1	18728	chr12:53800369:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	STC2->chr5:172741716-172756506:-,stanniocalcin_2,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	RH18_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	TPCN2--CCND1	2	0	TPCN2	5754	chr11:68830458:+	CCND1	30243	chr11:69465886:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	RH18_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000689
WM88_SKIN	CHEK2--PITPNB	12	0	CHEK2	1654	chr22:29137757:-	PITPNB	35936	chr22:28269803:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2106	0	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta	WM88_SKIN	1	1	0.2106	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	GMIP--ATP13A1	9	0	GMIP	7121	chr19:19747516:-	ATP13A1	27194	chr19:19760749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.158	0	LOCAL_REARRANGEMENT:-:[1531],GMIP->GEM_interacting_protein,chr19:19740285-19754476:-,ATP13A1->ATPase_13A1,chr19:19756007-19774502:-	WM88_SKIN	1	1	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	CHTF18--ERRFI1	8	0	CHTF18	3224	chr16:840269:+	ERRFI1	15220	chr1:8086341:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1404	0	CHTF18->chr16:838046-850737:+,chromosome_transmission_fidelity_factor_18,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	WM88_SKIN	1	1	0.1404	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	EIF1--GNAS	6	0	EIF1	1112	chr17:39845248:+	GNAS	21385	chr20:57466775:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1053	0	GTEx&tcga_normals:1/3694=0.03%,EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	WM88_SKIN	1	1	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	APOD--RUNX1	3	0	APOD	8816	chr3:195295956:-	RUNX1	51319	chr21:36161644:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	APOD->apolipoprotein_D,chr3:195295573-195311076:-,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	WM88_SKIN	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	CYHR1--LRRC41	3	0	CYHR1	11610	chr8:145677097:-	LRRC41	27476	chr1:46746181:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1,LRRC41->chr1:46726868-46769280:-,leucine_rich_repeat_containing_41	WM88_SKIN	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	PRMT2--EEF1D	3	0	PRMT2	2824	chr21:48056902:+	EEF1D	32331	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	PRMT2->chr21:48055079-48085036:+,protein_arginine_methyltransferase_2,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	WM88_SKIN	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	THAP8--PBX4	3	0	THAP8	1414	chr19:36545251:-	PBX4	11692	chr19:19681642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	THAP8->THAP_domain_containing_8,chr19:36525887-36545664:-,PBX4->chr19:19672522-19729725:-,pre-B-cell_leukemia_homeobox_4	WM88_SKIN	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	PBX4--ATP13A1	2	1	PBX4	6026	chr19:19680258:-	ATP13A1	25119	chr19:19760749:-	ONLY_REF_SPLICE	YES	0	8	1	0.27	0.0351	0.0176	LOCAL_REARRANGEMENT:-:[26282],PBX4->chr19:19672522-19729725:-,pre-B-cell_leukemia_homeobox_4,ATP13A1->ATPase_13A1,chr19:19756007-19774502:-	WM88_SKIN	0.27	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	ATRX--ZFAND3	2	0	ATRX	1235	chrX:77041468:-	ZFAND3	50909	chr6:38029369:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	CHSY1--ALDH1A3	2	0	CHSY1	4362	chr15:101775287:-	ALDH1A3	19587	chr15:101425472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	CHSY1->chondroitin_sulfate_synthase_1,chr15:101715928-101792137:-,ALDH1A3->aldehyde_dehydrogenase_1_family_member_A3,chr15:101417919-101456831:+	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	COL19A1--SON	2	0	COL19A1	15565	chr6:70672762:+	SON	69409	chr21:34931536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	COL19A1->Oncogene{Bushman},chr6:70576463-70919679:+,collagen_type_XIX_alpha_1,SON->SON_DNA_binding_protein,chr21:34914924-34949812:+	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	CTD-3138B18.5--SUCLG2	2	0	CTD-3138B18.5	1286	chr19:58789889:-	SUCLG2	9960	chr3:67579610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	CTD-3138B18.5->chr19:58768639-58790174:-,SUCLG2->chr3:67410884-67705038:-,succinate-CoA_ligase_GDP-forming_beta_subunit	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	DLEU1--DDX21	2	0	DLEU1	2024	chr13:50657330:+	DDX21	65683	chr10:70741293:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding),DDX21->DEAD-box_helicase_21,chr10:70715884-70744829:+	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	GALNT18--RP11-141M1.3	2	0	GALNT18	9780	chr11:11394062:-	RP11-141M1.3	23245	chr13:34098509:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GALNT18->chr11:11292423-11643552:-,polypeptide_N-acetylgalactosaminyltransferase_18,RP11-141M1.3->chr13:33929343-34250905:-	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	IARS--QSER1	2	0	IARS	1146	chr9:95055893:-	QSER1	40482	chr11:32948703:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	PHF21A--BSCL2	2	0	PHF21A	1500	chr11:46142486:-	BSCL2	37897	chr11:62474796:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-,BSCL2->Berardinelli-Seip_congenital_lipodystrophy_2_(seipin),chr11:62457747-62477317:-	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	RCC1--ANO6	2	0	RCC1	2175	chr1:28834672:+	ANO6	39943	chr12:45796855:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ANO6->anoctamin_6,chr12:45609770-45834187:+	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	RRAGB--NRF1	2	0	RRAGB	9851	chrX:55779947:+	NRF1	17655	chr7:129269919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	RRAGB->Ras_related_GTP_binding_B,chrX:55744172-55785207:+,NRF1->Oncogene{Bushman},chr7:129251555-129396922:+,nuclear_respiratory_factor_1	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	ZNF589--NGDN	2	0	ZNF589	5670	chr3:48302429:+	NGDN	20418	chr14:23945448:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	ZNF589->chr3:48282590-48340743:+,zinc_finger_protein_589,NGDN->chr14:23938897-23979071:+,neuroguidin	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TP53--SOX5	187	26	TP53	1162	chr17:7590695:-	SOX5	20166	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.6206	0.2253	TP53->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr17:7565097-7590856:-,tumor_protein_p53,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.8459	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027612.6--SLC9B1P2	67	1	AC027612.6	1064	chr2:91847935:-	SLC9B1P2	15308	chr2:92118478:-	ONLY_REF_SPLICE	YES	3	2	0.96	0.97	0.5807	0.0087	AC027612.6->chr2:91805186-91847998:-,SLC9B1P2->chr2:92071102-92119740:-,solute_carrier_family_9_member_B1_pseudogene_2	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.97	0.5894	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027612.6--SLC9B1P2	52	1	AC027612.6	1064	chr2:91847935:-	SLC9B1P2	16447	chr2:92102236:-	INCL_NON_REF_SPLICE	YES	3	11	0.95	0.83	0.4507	0.0087	AC027612.6->chr2:91805186-91847998:-,SLC9B1P2->chr2:92071102-92119740:-,solute_carrier_family_9_member_B1_pseudogene_2	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.95	0.4594	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-14N7.2--SLC9B1P1	38	0	RP11-14N7.2	1064	chr1:148928385:+	SLC9B1P1	7221	chrY:13524707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3293	0	RP11-14N7.2->chr1:148928322-148951595:+,SLC9B1P1->chrY:13496241-13524717:-,solute_carrier_family_9_member_B1_pseudogene_1	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3293	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNGTT--SQLE	33	3	RNGTT	14816	chr6:89388072:-	SQLE	30990	chr8:126023779:+	ONLY_REF_SPLICE	YES	17	241	0.68	0.13	0.286	0.026	RNGTT->RNA_guanylyltransferase_and_5'-phosphatase,chr6:89319985-89673348:-,SQLE->chr8:126010739-126034525:+,squalene_epoxidase	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.68	0.312	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2C--MED6	16	10	KMT2C	3611	chr7:152027686:-	MED6	78514	chr14:71060095:-	ONLY_REF_SPLICE	YES	27	103	0.49	0.2	0.1387	0.0867	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,MED6->chr14:71047974-71067384:-,mediator_complex_subunit_6	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.49	0.2254	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2C--MED6	8	4	KMT2C	3611	chr7:152027686:-	MED6	80511	chr14:71058098:-	ONLY_REF_SPLICE	YES	27	137	0.31	0.08	0.0693	0.0347	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,MED6->chr14:71047974-71067384:-,mediator_complex_subunit_6	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.31	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANAPC1--MIR4435-1HG	7	1	ANAPC1	13449	chr2:112614191:-	MIR4435-1HG	72132	chr2:112005818:-	ONLY_REF_SPLICE	YES	123	23	0.06	0.26	0.0607	0.0087	ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-,MIR4435-1HG->chr2:111953927-112252677:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.26	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV1-5	7	0	AC096579.7	3767	chr2:89157151:-	IGKV1-5	8987	chr2:89246913:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	LOCAL_REARRANGEMENT:-:[81166],AC096579.7->chr2:89130700-89165653:-,IGKV1-5->chr2:89246819-89247475:-,immunoglobulin_kappa_variable_1-5	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV1-5	7	0	AC096579.7	3776	chr2:89157142:-	IGKV1-5	8994	chr2:89246906:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	LOCAL_REARRANGEMENT:-:[81166],AC096579.7->chr2:89130700-89165653:-,IGKV1-5->chr2:89246819-89247475:-,immunoglobulin_kappa_variable_1-5	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAPER--KMT2C	5	3	SCAPER	5656	chr15:77150150:-	KMT2C	112269	chr7:151843820:-	ONLY_REF_SPLICE	YES	13	28	0.38	0.22	0.0433	0.026	SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.38	0.0693	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2C--ADAM20	5	1	KMT2C	3611	chr7:152027686:-	ADAM20	76062	chr14:70991650:-	ONLY_REF_SPLICE	YES	27	0	0.18	1	0.0433	0.0087	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,ADAM20->ADAM_metallopeptidase_domain_20,chr14:70989075-71001732:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HS2ST1--SEP15	4	0	HS2ST1	1513	chr1:87380843:+	SEP15	28222	chr1:87346408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0347	TRUE	0	3	0	8	1	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	4	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0347	TRUE	1	10	0	18	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027612.6--SLC9B1P2	3	1	AC027612.6	1064	chr2:91847935:-	SLC9B1P2	14165	chr2:92119739:-	INCL_NON_REF_SPLICE	YES	3	0	0.57	1	0.026	0.0087	AC027612.6->chr2:91805186-91847998:-,SLC9B1P2->chr2:92071102-92119740:-,solute_carrier_family_9_member_B1_pseudogene_2	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REL--ANKRD36BP2	3	0	REL	1330	chr2:61108985:+	ANKRD36BP2	36466	chr2:89100616:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	REL->Oncogene{Bushman},REL_proto-oncogene,_NF-kB_subunit,chr2:61108656-61158745:+,ANKRD36BP2->ankyrin_repeat_domain_36B_pseudogene_2,chr2:89065324-89106126:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ST14--APLP2	3	0	ST14	1499	chr11:130029955:+	APLP2	22856	chr11:129979324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_REARRANGEMENT:+:[14758],ST14->chr11:130029457-130080271:+,suppression_of_tumorigenicity_14,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	2	0	3	1	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD36BP2--SRSF1	2	0	ANKRD36BP2	1390	chr2:89065713:+	SRSF1	25561	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	ANKRD36BP2->ankyrin_repeat_domain_36B_pseudogene_2,chr2:89065324-89106126:+,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC16A--IGL@	2	0	CLEC16A	25214	chr16:11154879:+	IGL@	101519	chr22:23237555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,IGL@->Oncogene{Bushman}	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT1--RNPC3	2	0	CNOT1	15152	chr16:58610367:-	RNPC3	68273	chr1:104097656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,RNPC3->RNA_binding_region_(RNP1,_RRM)_containing_3,chr1:104068313-104097861:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LMNB2--BRE	2	0	LMNB2	2464	chr19:2444402:-	BRE	31429	chr2:28521205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	LMNB2->chr19:2427636-2456994:-,lamin_B2,BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBNL1--HPS3	2	0	MBNL1	3666	chr3:151986881:+	HPS3	29892	chr3:148857791:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,HPS3->HPS3,_biogenesis_of_lysosomal_organelles_complex_2_subunit_1,chr3:148847371-148891519:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTHFD2--REV1	2	0	MTHFD2	7879	chr2:74438993:+	REV1	25009	chr2:100052403:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	MTHFD2->chr2:74425689-74444692:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_2,_methenyltetrahydrofolate_cyclohydrolase,REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAF3--ATP5C1	2	0	TAF3	2615	chr10:7866523:+	ATP5C1	16733	chr10:7839010:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[10689],TAF3->TATA-box_binding_protein_associated_factor_3,chr10:7860467-8058590:+,ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	2	0	4	2	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WTAP--IGF2R	2	0	WTAP	2749	chr6:160148365:+	IGF2R	22001	chr6:160445604:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	WTAP->Wilms_tumor_1_associated_protein,chr6:160146617-160177351:+,IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXP1--CTD-2410N18.5	1	1	FOXP1	5088	chr3:71542577:-	CTD-2410N18.5	49662	chr5:133509713:-	ONLY_REF_SPLICE	YES	11	3	0.15	0.4	0.0087	0.0087	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,CTD-2410N18.5->chr5:133502861-133561762:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.4	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000140
SNU1066_UPPER_AERODIGESTIVE_TRACT	NOL9--DNAJC11	43	6	NOL9	3474	chr1:6609631:-	DNAJC11	24887	chr1:6727870:-	ONLY_REF_SPLICE	YES	8	48	0.86	0.51	0.3808	0.0531	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[79633],NOL9->chr1:6581407-6614595:-,nucleolar_protein_9,DNAJC11->DnaJ_heat_shock_protein_family_(Hsp40)_member_C11,chr1:6694228-6761984:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.51	0.86	0.4339	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	WDR60--NCAPG2	28	3	WDR60	10704	chr7:158694507:+	NCAPG2	35685	chr7:158494629:-	ONLY_REF_SPLICE	YES	9	16	0.78	0.66	0.2479	0.0266	WDR60->WD_repeat_domain_60,chr7:158649269-158749438:+,NCAPG2->chr7:158424003-158497520:-,non-SMC_condensin_II_complex_subunit_G2	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.66	0.78	0.2745	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	ZFYVE9--BTF3L4	19	1	ZFYVE9	1030	chr1:52608075:+	BTF3L4	28785	chr1:52525507:+	ONLY_REF_SPLICE	YES	3	14	0.87	0.59	0.1682	0.0089	LOCAL_REARRANGEMENT:+:[51658],ZFYVE9->chr1:52608046-52812358:+,zinc_finger_FYVE-type_containing_9,BTF3L4->basic_transcription_factor_3-like_4,chr1:52521797-52556388:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.59	0.87	0.1771	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	ZFYVE9--BTF3L4	9	1	ZFYVE9	1030	chr1:52608075:+	BTF3L4	30610	chr1:52530497:+	ONLY_REF_SPLICE	YES	3	159	0.77	0.06	0.0797	0.0089	LOCAL_REARRANGEMENT:+:[51658],ZFYVE9->chr1:52608046-52812358:+,zinc_finger_FYVE-type_containing_9,BTF3L4->basic_transcription_factor_3-like_4,chr1:52521797-52556388:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.06	0.77	0.0886	TRUE	0	1	0	1	1	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MEIS2--COL9A1	3	2	MEIS2	9838	chr15:37375972:-	COL9A1	30379	chr6:71010089:-	ONLY_REF_SPLICE	YES	33	0	0.13	1	0.0266	0.0177	MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,COL9A1->chr6:70924764-71012786:-,collagen_type_IX_alpha_1	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.13	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	EFNA5--FBXL17	2	0	EFNA5	1407	chr5:107006190:-	FBXL17	28104	chr5:107197561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1},{Klijn_CCL:Head-Neck=1,Lung=1},EFNA5->chr5:106712590-107006596:-,ephrin_A5,FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	GNE--RECK	2	0	GNE	1163	chr9:36276891:-	RECK	22100	chr9:36052262:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	LOCAL_INVERSION:-:+:[89990],GNE->chr9:36214438-36277053:-,glucosamine_(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine_kinase,RECK->chr9:36036430-36124448:+,reversion_inducing_cysteine_rich_protein_with_kazal_motifs	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	LIN7C--SEP15	2	0	LIN7C	3694	chr11:27520906:-	SEP15	15306	chr1:87346408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	LIN7C->chr11:27516123-27528320:-,lin-7_homolog_C,_crumbs_cell_polarity_complex_component,SEP15->chr1:87328132-87380107:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	PHAX--GRAMD3	2	0	PHAX	3414	chr5:125939875:+	GRAMD3	18956	chr5:125801118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	PHAX->chr5:125935960-125962944:+,phosphorylated_adaptor_for_RNA_export,GRAMD3->GRAM_domain_containing_3,chr5:125695824-125832186:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-435B5.4--NOC3L	2	0	RP11-435B5.4	2843	chr1:143465380:-	NOC3L	34133	chr10:96099677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	RP11-435B5.4->chr1:143354963-143467632:-,NOC3L->NOC3_like_DNA_replication_regulator,chr10:96075004-96122716:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RPS6KB1--VMP1	2	0	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	9	0	11	6	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	SPIN1--GTF2F2	2	0	SPIN1	1120	chr9:91003453:+	GTF2F2	18898	chr13:45710868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	SPIN1->chr9:91003334-91093609:+,spindlin_1,GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	ZMIZ1--FBXW4	2	0	ZMIZ1	4523	chr10:80921890:+	FBXW4	38558	chr10:103436193:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	ZMIZ1->Oncogene{Bushman},chr10:80828792-81076276:+,zinc_finger_MIZ-type_containing_1,FBXW4->F-box_and_WD_repeat_domain_containing_4,Oncogene{Bushman},chr10:103370423-103455052:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	ZNF33B--BMS1	2	0	ZNF33B	3753	chr10:43127377:-	BMS1	31778	chr10:43312047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	ZNF33B->chr10:43069633-43134016:-,chr10:43084555-43133992:-,zinc_finger_protein_33B,BMS1->BMS1,_ribosome_biogenesis_factor,chr10:43278249-43330385:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
NCIH1395_LUNG	COX5A--PARP16	1160	353	COX5A	4843	chr15:75215989:-	PARP16	21901	chr15:65527161:-	ONLY_REF_SPLICE	YES	412	0	0.79	1	11.4327	3.4791	COX5A->chr15:75212132-75230509:-,cytochrome_c_oxidase_subunit_5A,PARP16->chr15:65526798-65592956:-,poly(ADP-ribose)_polymerase_family_member_16	NCIH1395_LUNG	0.79	1	14.9118	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PVT1--RBBP8NL	249	93	PVT1	1202	chr8:128806980:+	RBBP8NL	29526	chr20:60994786:-	ONLY_REF_SPLICE	YES	337	0	0.5	1	2.4541	0.9166	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RBBP8NL->RBBP8_N-terminal_like,chr20:60985293-61002589:-	NCIH1395_LUNG	0.5	1	3.3707	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	GAB2--PACS1	141	26	GAB2	1703	chr11:78128692:-	PACS1	28311	chr11:65960957:+	ONLY_REF_SPLICE	YES	14	11	0.92	0.94	1.3897	0.2562	GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	NCIH1395_LUNG	0.92	0.94	1.6459	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	OSBPL2--CASC11	135	29	OSBPL2	2239	chr20:60831277:+	CASC11	22489	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1497	0	0.1	1	1.3305	0.2858	OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NCIH1395_LUNG	0.1	1	1.6163	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PVT1--SNRPB2	121	55	PVT1	1202	chr8:128806980:+	SNRPB2	33649	chr20:16720970:+	ONLY_REF_SPLICE	YES	337	67	0.34	0.72	1.1925	0.5421	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNRPB2->chr20:16710606-16722421:+,small_nuclear_ribonucleoprotein_polypeptide_B2	NCIH1395_LUNG	0.34	0.72	1.7346	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	HS6ST2--GPC3	109	27	HS6ST2	4211	chrX:132090836:-	GPC3	23738	chrX:132795878:-	ONLY_REF_SPLICE	YES	47	0	0.74	1	1.0743	0.2661	{Klijn_CCL:Lung=1},HS6ST2->chrX:131760044-132095423:-,heparan_sulfate_6-O-sulfotransferase_2,GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3	NCIH1395_LUNG	0.74	1	1.3404	TRUE	0	1	0	2	0	TRUE	ACH-000327
NCIH1395_LUNG	ZFP91--CLPB	90	32	ZFP91	2541	chr11:58352357:+	CLPB	28130	chr11:72040848:-	ONLY_REF_SPLICE	YES	39	65	0.76	0.65	0.887	0.3154	ZFP91->ZFP91_zinc_finger_protein,chr11:58346584-58388515:+,CLPB->ClpB_homolog,_mitochondrial_AAA_ATPase_chaperonin,chr11:72003469-72145692:-	NCIH1395_LUNG	0.65	0.76	1.2024	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	LAMA5--RBBP8NL	75	15	LAMA5	2517	chr20:60937456:-	RBBP8NL	46243	chr20:60993521:-	ONLY_REF_SPLICE	YES	224	54	0.29	0.62	0.7392	0.1478	LOCAL_REARRANGEMENT:-:[42925],LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,RBBP8NL->RBBP8_N-terminal_like,chr20:60985293-61002589:-	NCIH1395_LUNG	0.29	0.62	0.887	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PVT1--RBBP8NL	50	99	PVT1	2457	chr8:128808254:+	RBBP8NL	29526	chr20:60994786:-	ONLY_REF_SPLICE	YES	322	0	0.32	1	0.4928	0.9757	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RBBP8NL->RBBP8_N-terminal_like,chr20:60985293-61002589:-	NCIH1395_LUNG	0.32	1	1.4685	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MCF2L--TSPAN3	63	35	MCF2L	11149	chr13:113623772:+	TSPAN3	65554	chr15:77348597:-	ONLY_REF_SPLICE	YES	15	364	0.87	0.21	0.6209	0.345	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,TSPAN3->chr15:77336359-77376326:-,tetraspanin_3	NCIH1395_LUNG	0.21	0.87	0.9659	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PVT1--RBBP8NL	32	105	PVT1	2520	chr8:128808317:+	RBBP8NL	29526	chr20:60994786:-	ONLY_REF_SPLICE	YES	327	0	0.3	1	0.3154	1.0349	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RBBP8NL->RBBP8_N-terminal_like,chr20:60985293-61002589:-	NCIH1395_LUNG	0.3	1	1.3503	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	EPS15L1--CALR3	42	1	EPS15L1	1173	chr19:16582724:-	CALR3	38784	chr19:16593596:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.4139	0.0099	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[6972],EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1,CALR3->calreticulin_3,chr19:16589868-16607003:-	NCIH1395_LUNG	0.98	1	0.4238	TRUE	0	1	0	1	1	TRUE	ACH-000327
NCIH1395_LUNG	COX5A--PARP16	13	104	COX5A	3720	chr15:75219107:-	PARP16	21901	chr15:65527161:-	ONLY_REF_SPLICE	YES	1450	0	0.07	1	0.1281	1.025	COX5A->chr15:75212132-75230509:-,cytochrome_c_oxidase_subunit_5A,PARP16->chr15:65526798-65592956:-,poly(ADP-ribose)_polymerase_family_member_16	NCIH1395_LUNG	0.07	1	1.1531	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MCF2L--TSPAN3	24	29	MCF2L	10405	chr13:113623028:+	TSPAN3	65554	chr15:77348597:-	ONLY_REF_SPLICE	YES	10	364	0.84	0.13	0.2365	0.2858	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,TSPAN3->chr15:77336359-77376326:-,tetraspanin_3	NCIH1395_LUNG	0.13	0.84	0.5223	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PVT1--SNRPB2	11	60	PVT1	2457	chr8:128808254:+	SNRPB2	33649	chr20:16720970:+	ONLY_REF_SPLICE	YES	322	67	0.18	0.51	0.1084	0.5913	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNRPB2->chr20:16710606-16722421:+,small_nuclear_ribonucleoprotein_polypeptide_B2	NCIH1395_LUNG	0.18	0.51	0.6997	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MCF2L--TSPAN3	20	13	MCF2L	2233	chr13:113556685:+	TSPAN3	65554	chr15:77348597:-	ONLY_REF_SPLICE	YES	5	364	0.87	0.08	0.1971	0.1281	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,TSPAN3->chr15:77336359-77376326:-,tetraspanin_3	NCIH1395_LUNG	0.08	0.87	0.3252	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PVT1--SNRPB2	6	64	PVT1	2520	chr8:128808317:+	SNRPB2	33649	chr20:16720970:+	ONLY_REF_SPLICE	YES	327	67	0.18	0.51	0.0591	0.6308	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNRPB2->chr20:16710606-16722421:+,small_nuclear_ribonucleoprotein_polypeptide_B2	NCIH1395_LUNG	0.18	0.51	0.6899	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	CHORDC1--RP11-164N3.1	18	6	CHORDC1	17575	chr11:89935099:-	RP11-164N3.1	21371	chr11:87783298:+	INCL_NON_REF_SPLICE	YES	17	0	0.59	1	0.1774	0.0591	CHORDC1->chr11:89934328-89956532:-,cysteine_and_histidine_rich_domain_containing_1,RP11-164N3.1->chr11:87783274-87795278:+	NCIH1395_LUNG	0.59	1	0.2365	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PVT1--SNRPB2	1	64	PVT1	3930	chr8:128815805:+	SNRPB2	33649	chr20:16720970:+	ONLY_REF_SPLICE	NO	329	67	0.16	0.49	0.0099	0.6308	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNRPB2->chr20:16710606-16722421:+,small_nuclear_ribonucleoprotein_polypeptide_B2	NCIH1395_LUNG	0.16	0.49	0.6407	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	ZFP91--CLPB	8	27	ZFP91	1512	chr11:58347095:+	CLPB	28130	chr11:72040848:-	ONLY_REF_SPLICE	YES	36	65	0.49	0.35	0.0788	0.2661	ZFP91->ZFP91_zinc_finger_protein,chr11:58346584-58388515:+,CLPB->ClpB_homolog,_mitochondrial_AAA_ATPase_chaperonin,chr11:72003469-72145692:-	NCIH1395_LUNG	0.35	0.49	0.3449	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	RBPMS2--RP11-100M12.3	14	2	RBPMS2	1355	chr15:65067432:-	RP11-100M12.3	12439	chr15:27786533:-	INCL_NON_REF_SPLICE	YES	2	1	0.89	0.94	0.138	0.0197	RBPMS2->RNA_binding_protein_with_multiple_splicing_2,chr15:65032091-65067786:-,RP11-100M12.3->chr15:27728181-27787137:-	NCIH1395_LUNG	0.89	0.94	0.1577	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	WNT11--PCF11	9	4	WNT11	3021	chr11:75917369:-	PCF11	28684	chr11:82895721:+	ONLY_REF_SPLICE	YES	21	39	0.38	0.25	0.0887	0.0394	WNT11->Wnt_family_member_11,chr11:75897369-75921780:-,PCF11->PCF11_cleavage_and_polyadenylation_factor_subunit,chr11:82868030-82898493:+	NCIH1395_LUNG	0.25	0.38	0.1281	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PVT1--SNRPB2	3	24	PVT1	1202	chr8:128806980:+	SNRPB2	34170	chr20:16721491:+	ONLY_REF_SPLICE	YES	337	71	0.07	0.28	0.0296	0.2365	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNRPB2->chr20:16710606-16722421:+,small_nuclear_ribonucleoprotein_polypeptide_B2	NCIH1395_LUNG	0.07	0.28	0.2661	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	FAM168A--C11orf30	8	2	FAM168A	6116	chr11:73130919:-	C11orf30	33893	chr11:76224430:+	ONLY_REF_SPLICE	YES	9	26	0.53	0.28	0.0788	0.0197	{Klijn_CCL:Lung=1},FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	NCIH1395_LUNG	0.28	0.53	0.0985	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	EFCAB4B--PARP11	7	3	EFCAB4B	2441	chr12:3862181:-	PARP11	39846	chr12:3939184:-	ONLY_REF_SPLICE	YES	11	5	0.48	0.67	0.069	0.0296	LOCAL_REARRANGEMENT:-:[26228],EFCAB4B->chr12:3715799-3873985:-,PARP11->chr12:3900213-3982608:-,poly(ADP-ribose)_polymerase_family_member_11	NCIH1395_LUNG	0.48	0.67	0.0986	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	EFCAB4B--PARP11	6	5	EFCAB4B	2441	chr12:3862181:-	PARP11	38724	chr12:3973123:-	ONLY_REF_SPLICE	YES	11	3	0.5	0.79	0.0591	0.0493	LOCAL_REARRANGEMENT:-:[26228],EFCAB4B->chr12:3715799-3873985:-,PARP11->chr12:3900213-3982608:-,poly(ADP-ribose)_polymerase_family_member_11	NCIH1395_LUNG	0.5	0.79	0.1084	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	TENM4--PC	6	4	TENM4	1440	chr11:79151553:-	PC	67692	chr11:66639630:-	ONLY_REF_SPLICE	YES	0	5	1	0.67	0.0591	0.0394	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,PC->chr11:66615704-66725847:-,pyruvate_carboxylase	NCIH1395_LUNG	0.67	1	0.0985	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	HERC1--MAP2K1	6	2	HERC1	6143	chr15:64056295:-	MAP2K1	94936	chr15:66774093:+	ONLY_REF_SPLICE	YES	5	175	0.62	0.04	0.0591	0.0197	GTEx&tcga_normals:1/3694=0.03%,HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,MAP2K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr15:66679155-66784650:+,mitogen-activated_protein_kinase_kinase_1	NCIH1395_LUNG	0.04	0.62	0.0788	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	EMR2--GRM5	6	1	EMR2	5334	chr19:14883154:-	GRM5	37574	chr11:88386571:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0591	0.0099	EMR2->chr19:14843205-14889353:-,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	NCIH1395_LUNG	0.88	1	0.069	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	WDR72--CLPX	6	0	WDR72	18976	chr15:53957769:-	CLPX	38744	chr15:65459123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0591	0	WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-,CLPX->caseinolytic_mitochondrial_matrix_peptidase_chaperone_subunit,chr15:65440557-65477680:-	NCIH1395_LUNG	1	1	0.0591	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PC--KCNE3	5	0	PC	3864	chr11:66719901:-	KCNE3	24767	chr11:74175370:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,KCNE3->chr11:74165886-74178774:-,potassium_voltage-gated_channel_subfamily_E_regulatory_subunit_3	NCIH1395_LUNG	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	HSPA12B--PHF14	4	0	HSPA12B	10232	chr20:3731554:+	PHF14	39952	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	HSPA12B->chr20:3713314-3733758:+,heat_shock_protein_family_A_(Hsp70)_member_12B,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1395_LUNG	1	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PDCD7--RP11-299H22.1	3	3	PDCD7	3064	chr15:65421370:-	RP11-299H22.1	13558	chr15:62488961:-	ONLY_REF_SPLICE	YES	35	0	0.15	1	0.0296	0.0296	PDCD7->chr15:65409717-65426174:-,programmed_cell_death_7,RP11-299H22.1->chr15:62488344-62495517:-	NCIH1395_LUNG	0.15	1	0.0592	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	CDC27--LRPPRC	2	0	CDC27	5307	chr17:45247283:-	LRPPRC	63794	chr2:44117015:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-,LRPPRC->chr2:44113647-44223144:-,leucine_rich_pentatricopeptide_repeat_containing	NCIH1395_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	LETMD1--ST3GAL1	2	0	LETMD1	2224	chr12:51442968:+	ST3GAL1	24463	chr8:134488843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	LETMD1->LETM1_domain_containing_1,chr12:51441745-51454207:+,ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-	NCIH1395_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	NBAS--FAM49A	2	0	NBAS	5992	chr2:15691617:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NCIH1395_LUNG	1	1	0.0197	TRUE	0	0	0	5	0	TRUE	ACH-000327
NCIH1395_LUNG	OSBPL2--DHCR7	2	0	OSBPL2	2239	chr20:60831277:+	DHCR7	24357	chr11:71158780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,DHCR7->7-dehydrocholesterol_reductase,chr11:71139239-71163914:-	NCIH1395_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PC--KCNE3	2	0	PC	3864	chr11:66719901:-	KCNE3	26583	chr11:74173148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,KCNE3->chr11:74165886-74178774:-,potassium_voltage-gated_channel_subfamily_E_regulatory_subunit_3	NCIH1395_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	TENM4--PC	1	4	TENM4	2679	chr11:79150006:-	PC	67692	chr11:66639630:-	ONLY_REF_SPLICE	YES	0	5	1	0.5	0.0099	0.0394	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,PC->chr11:66615704-66725847:-,pyruvate_carboxylase	NCIH1395_LUNG	0.5	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000327
SJSA1_BONE	HMGA2--LUM	5481	3219	HMGA2	5315	chr12:66232349:+	LUM	30462	chr12:91498096:-	ONLY_REF_SPLICE	YES	8	597	1	0.94	69.1341	40.6025	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	SJSA1_BONE	0.94	1	109.7366	TRUE	0	0	0	8	0	TRUE	ACH-000748
SJSA1_BONE	HMGA2--LUM	14	3219	HMGA2	5315	chr12:66232349:+	LUM	30464	chr12:91498094:-	INCL_NON_REF_SPLICE	YES	8	543	1	0.86	0.1766	40.6025	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	SJSA1_BONE	0.86	1	40.7791	TRUE	0	0	0	8	0	TRUE	ACH-000748
SJSA1_BONE	KIF5A--STK24	124	42	KIF5A	1403	chr12:57944183:+	STK24	35329	chr13:99116090:-	ONLY_REF_SPLICE	YES	6	217	0.97	0.43	1.5641	0.5298	KIF5A->chr12:57943781-57980415:+,kinesin_family_member_5A,STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24	SJSA1_BONE	0.43	0.97	2.0939	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	RBM19--RP11-689B22.2	59	21	RBM19	21862	chr12:114352774:-	RP11-689B22.2	34513	chr12:109030171:+	ONLY_REF_SPLICE	YES	39	0	0.67	1	0.7442	0.2649	RBM19->RNA_binding_motif_protein_19,chr12:114254543-114404176:-,RP11-689B22.2->chr12:109022463-109035094:+	SJSA1_BONE	0.67	1	1.0091	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	UBAC2--TMCO3	45	47	UBAC2	13004	chr13:99992819:+	TMCO3	35656	chr13:114202641:+	INCL_NON_REF_SPLICE	YES	237	155	0.28	0.37	0.5676	0.5928	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	SJSA1_BONE	0.28	0.37	1.1604	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	R3HDM2--IPO5	49	15	R3HDM2	2356	chr12:57789532:-	IPO5	36440	chr13:98621977:+	ONLY_REF_SPLICE	YES	7	1	0.9	0.98	0.6181	0.1892	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,IPO5->chr13:98605912-98676551:+,importin_5	SJSA1_BONE	0.9	0.98	0.8073	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	ARHGEF7--CPM	42	20	ARHGEF7	2133	chr13:111768038:+	CPM	49167	chr12:69264179:-	ONLY_REF_SPLICE	YES	0	45	1	0.58	0.5298	0.2523	ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,CPM->carboxypeptidase_M,chr12:69235977-69365350:-	SJSA1_BONE	0.58	1	0.7821	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	IRS2--KRT76	40	10	IRS2	5527	chr13:110434389:-	KRT76	13654	chr12:53169386:-	ONLY_REF_SPLICE	YES	32	0	0.61	1	0.5045	0.1261	IRS2->ArcherDX_panel,FoundationOne_panel,chr13:110406184-110438915:-,insulin_receptor_substrate_2,KRT76->chr12:53161939-53171129:-,keratin_76	SJSA1_BONE	0.61	1	0.6306	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	KCTD10--LINC00331	33	0	KCTD10	1285	chr12:109915065:-	LINC00331	20777	chr13:79361614:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4162	0	KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10,LINC00331->chr13:79361454-79366442:-,long_intergenic_non-protein_coding_RNA_331	SJSA1_BONE	1	1	0.4162	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	COL1A1--COL6A2	27	0	COL1A1	5797	chr17:48273978:-	COL6A2	36137	chr21:47544799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3406	0	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	SJSA1_BONE	1	1	0.3406	TRUE	0	0	0	6	0	TRUE	ACH-000748
SJSA1_BONE	UBAC2--TMCO3	19	31	UBAC2	13004	chr13:99992819:+	TMCO3	36755	chr13:114203740:+	ONLY_REF_SPLICE	YES	237	210	0.17	0.19	0.2397	0.391	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	SJSA1_BONE	0.17	0.19	0.6307	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	R3HDM2--KRT76	16	5	R3HDM2	2356	chr12:57789532:-	KRT76	34218	chr12:53169386:-	ONLY_REF_SPLICE	YES	7	0	0.75	1	0.2018	0.0631	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,KRT76->chr12:53161939-53171129:-,keratin_76	SJSA1_BONE	0.75	1	0.2649	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	ARHGEF7--CPM	14	11	ARHGEF7	2133	chr13:111768038:+	CPM	50071	chr12:69263275:-	ONLY_REF_SPLICE	YES	0	84	1	0.23	0.1766	0.1387	ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,CPM->carboxypeptidase_M,chr12:69235977-69365350:-	SJSA1_BONE	0.23	1	0.3153	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	R3HDM2--RP11-383H17.4	15	0	R3HDM2	2356	chr12:57789532:-	RP11-383H17.4	33673	chr13:98605744:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1892	0	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,RP11-383H17.4->chr13:98591610-98605793:+	SJSA1_BONE	1	1	0.1892	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	RBM19--RP11-689B22.2	9	24	RBM19	21862	chr12:114352774:-	RP11-689B22.2	32875	chr12:109028107:+	ONLY_REF_SPLICE	YES	39	0	0.46	1	0.1135	0.3027	RBM19->RNA_binding_motif_protein_19,chr12:114254543-114404176:-,RP11-689B22.2->chr12:109022463-109035094:+	SJSA1_BONE	0.46	1	0.4162	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	R3HDM2--IPO5	11	15	R3HDM2	2356	chr12:57789532:-	IPO5	33025	chr13:98606373:+	ONLY_REF_SPLICE	YES	7	1	0.79	0.96	0.1387	0.1892	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,IPO5->chr13:98605912-98676551:+,importin_5	SJSA1_BONE	0.79	0.96	0.3279	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	TUBGCP3--SPRY2	13	7	TUBGCP3	1263	chr13:113242219:-	SPRY2	32597	chr13:80911891:-	ONLY_REF_SPLICE	YES	49	66	0.29	0.23	0.164	0.0883	TUBGCP3->chr13:113139325-113242481:-,tubulin_gamma_complex_associated_protein_3,SPRY2->chr13:80910111-80915086:-,sprouty_RTK_signaling_antagonist_2	SJSA1_BONE	0.23	0.29	0.2523	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	KCTD10--LINC00331	13	1	KCTD10	1285	chr12:109915065:-	LINC00331	19709	chr13:79363719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.164	0.0126	KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10,LINC00331->chr13:79361454-79366442:-,long_intergenic_non-protein_coding_RNA_331	SJSA1_BONE	1	1	0.1766	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	TAF7L--OS9	13	0	TAF7L	11027	chrX:100531410:-	OS9	22733	chr12:58111715:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.164	0	TAF7L->TATA-box_binding_protein_associated_factor_7_like,chrX:100523241-100548059:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	SJSA1_BONE	1	1	0.164	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	TAF7L--OS9	9	0	TAF7L	11032	chrX:100531405:-	OS9	23033	chr12:58112015:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1135	0	TAF7L->TATA-box_binding_protein_associated_factor_7_like,chrX:100523241-100548059:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	SJSA1_BONE	1	1	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	R3HDM2--IPO5	4	11	R3HDM2	2356	chr12:57789532:-	IPO5	36443	chr13:98621980:+	INCL_NON_REF_SPLICE	YES	7	1	0.68	0.94	0.0505	0.1387	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,IPO5->chr13:98605912-98676551:+,importin_5	SJSA1_BONE	0.68	0.94	0.1892	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	SNX32--ARPC2	4	0	SNX32	8951	chr11:65623697:+	ARPC2	24433	chr2:219110166:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	SNX32->chr11:65601112-65624367:+,sorting_nexin_32,ARPC2->actin_related_protein_2/3_complex_subunit_2,chr2:219081817-219119079:+	SJSA1_BONE	1	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	SH3TC1--PDE1C	3	1	SH3TC1	20030	chr4:8230371:+	PDE1C	40573	chr7:31920473:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0378	0.0126	SH3TC1->SH3_domain_and_tetratricopeptide_repeats_1,chr4:8183799-8243530:+,PDE1C->chr7:31790793-32338941:-,phosphodiesterase_1C	SJSA1_BONE	0.8	1	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	ENO1--ACTG1	3	0	ENO1	13070	chr1:8921342:-	ACTG1	19582	chr17:79478970:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	GTEx&tcga_normals:2/3694=0.05%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SJSA1_BONE	1	1	0.0378	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	RBM19--RP11-689B22.2	1	7	RBM19	21862	chr12:114352774:-	RP11-689B22.2	35574	chr12:109034650:+	ONLY_REF_SPLICE	YES	39	0	0.17	1	0.0126	0.0883	RBM19->RNA_binding_motif_protein_19,chr12:114254543-114404176:-,RP11-689B22.2->chr12:109022463-109035094:+	SJSA1_BONE	0.17	1	0.1009	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	ABI1--ITGB1	2	0	ABI1	3560	chr10:27112067:-	ITGB1	47960	chr10:33190563:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	SJSA1_BONE	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	SENP1--HMGA2	2	0	SENP1	6458	chr12:48490126:-	HMGA2	29666	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	SENP1->SUMO1/sentrin_specific_peptidase_1,chr12:48436681-48500091:-,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SJSA1_BONE	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000748
SKBR3_BREAST	TATDN1--GSDMB	1906	13	TATDN1	1434	chr8:125551266:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	0	12	1	0.99	18.7696	0.128	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.99	1	18.8976	TRUE	0	1	0	3	1	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	840	8	TATDN1	1434	chr8:125551266:-	GSDMB	27467	chr17:38062238:-	ONLY_REF_SPLICE	YES	0	1262	1	0.4	8.272	0.0788	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.4	1	8.3508	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	CYTH1--EIF3H	650	119	CYTH1	1096	chr17:76778284:-	EIF3H	28690	chr8:117768258:-	ONLY_REF_SPLICE	YES	3	0	1	1	6.401	1.1719	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	1	1	7.5729	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	584	10	TATDN1	1434	chr8:125551266:-	GSDMB	27181	chr17:38062524:-	ONLY_REF_SPLICE	YES	0	1010	1	0.37	5.751	0.0985	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.37	1	5.8495	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	270	58	TATDN1	1531	chr8:125551169:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	5	12	0.98	0.96	2.6589	0.5712	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.96	0.98	3.2301	TRUE	0	1	0	3	1	TRUE	ACH-000017
SKBR3_BREAST	CYTH1--EIF3H	258	62	CYTH1	1096	chr17:76778284:-	EIF3H	32173	chr8:117738411:-	ONLY_REF_SPLICE	YES	3	2508	0.99	0.11	2.5407	0.6106	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	0.11	0.99	3.1513	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	PREX1--CPNE1	136	58	PREX1	2314	chr20:47364346:-	CPNE1	53305	chr20:34215335:-	ONLY_REF_SPLICE	YES	97	206	0.67	0.48	1.3393	0.5712	GTEx&tcga_normals:1/3694=0.03%,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,CPNE1->chr20:34213953-34252878:-,copine_1	SKBR3_BREAST	0.48	0.67	1.9105	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	SUMF1--LRRFIP2	130	61	SUMF1	8817	chr3:4418014:-	LRRFIP2	40265	chr3:37170640:-	ONLY_REF_SPLICE	YES	91	53	0.68	0.78	1.2802	0.6007	{Klijn_CCL:Breast=1},SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	SKBR3_BREAST	0.68	0.78	1.8809	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	129	21	TATDN1	1531	chr8:125551169:-	GSDMB	27467	chr17:38062238:-	ONLY_REF_SPLICE	YES	5	1262	0.97	0.11	1.2703	0.2068	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.11	0.97	1.4771	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	RARA--PKIA	120	11	RARA	1095	chr17:38465538:+	PKIA	21989	chr8:79485046:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.1817	0.1083	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,PKIA->chr8:79428374-79517502:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_alpha	SKBR3_BREAST	0.99	1	1.29	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	ANKHD1--PCDH1	105	23	ANKHD1	7029	chr5:139825560:+	PCDH1	56142	chr5:141234001:-	ONLY_REF_SPLICE	YES	81	4	0.61	0.97	1.034	0.2265	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,PCDH1->chr5:141232938-141258811:-,protocadherin_1	SKBR3_BREAST	0.61	0.97	1.2605	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	CYTH1--EIF3H	94	27	CYTH1	1096	chr17:76778284:-	EIF3H	35587	chr8:117671219:-	ONLY_REF_SPLICE	YES	3	3176	0.98	0.04	0.9257	0.2659	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	0.04	0.98	1.1916	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	CYTH1--EIF3H	66	91	CYTH1	1096	chr17:76778284:-	EIF3H	28912	chr8:117768036:-	ONLY_REF_SPLICE	YES	3	1	0.98	0.99	0.6499	0.8961	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	0.98	0.99	1.546	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	70	30	TATDN1	1531	chr8:125551169:-	GSDMB	27181	chr17:38062524:-	ONLY_REF_SPLICE	YES	5	1010	0.95	0.09	0.6893	0.2954	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.09	0.95	0.9847	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	KLHDC2--SNTB1	69	29	KLHDC2	9999	chr14:50249312:+	SNTB1	23424	chr8:121561198:-	ONLY_REF_SPLICE	YES	160	9	0.38	0.92	0.6795	0.2856	KLHDC2->chr14:50234326-50249909:+,kelch_domain_containing_2,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	SKBR3_BREAST	0.38	0.92	0.9651	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	ACOT8--WASH3P	69	13	ACOT8	2353	chr20:44483798:-	WASH3P	13886	chr15:102506273:+	ONLY_REF_SPLICE	YES	157	4	0.34	0.95	0.6795	0.128	ACOT8->acyl-CoA_thioesterase_8,chr20:44470360-44486045:-,WASH3P->WAS_protein_family_homolog_3_pseudogene,chr15:102501356-102516768:+	SKBR3_BREAST	0.34	0.95	0.8075	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TAF2--COLEC10	63	9	TAF2	9798	chr8:120807772:-	COLEC10	41258	chr8:120114587:+	ONLY_REF_SPLICE	YES	91	0	0.44	1	0.6204	0.0886	TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	SKBR3_BREAST	0.44	1	0.709	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	PREX1--CPNE1	45	19	PREX1	2314	chr20:47364346:-	CPNE1	53915	chr20:34214725:-	ONLY_REF_SPLICE	YES	97	292	0.4	0.18	0.4431	0.1871	GTEx&tcga_normals:1/3694=0.03%,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,CPNE1->chr20:34213953-34252878:-,copine_1	SKBR3_BREAST	0.18	0.4	0.6302	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	33	10	TATDN1	1434	chr8:125551266:-	GSDMB	26465	chr17:38063240:-	ONLY_REF_SPLICE	YES	0	952	1	0.04	0.325	0.0985	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.04	1	0.4235	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	VSTM2L--CTNNBL1	31	10	VSTM2L	3596	chr20:36561991:+	CTNNBL1	32009	chr20:36488301:+	ONLY_REF_SPLICE	YES	106	138	0.28	0.23	0.3053	0.0985	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[30968],VSTM2L->V-set_and_transmembrane_domain_containing_2_like,chr20:36531499-36573752:+,CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+	SKBR3_BREAST	0.23	0.28	0.4038	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	ATAD5--TLK2	27	18	ATAD5	20714	chr17:29206505:+	TLK2	48337	chr17:60650576:+	ONLY_REF_SPLICE	YES	7	31	0.87	0.59	0.2659	0.1773	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2	SKBR3_BREAST	0.59	0.87	0.4432	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	RARA--PKIA	29	7	RARA	1095	chr17:38465538:+	PKIA	24171	chr8:79510593:+	ONLY_REF_SPLICE	YES	1	20	0.97	0.64	0.2856	0.0689	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,PKIA->chr8:79428374-79517502:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_alpha	SKBR3_BREAST	0.64	0.97	0.3545	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	SUMF1--LRRFIP2	21	31	SUMF1	7757	chr3:4452549:-	LRRFIP2	40265	chr3:37170640:-	ONLY_REF_SPLICE	YES	64	53	0.45	0.5	0.2068	0.3053	{Klijn_CCL:Breast=1},SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	SKBR3_BREAST	0.45	0.5	0.5121	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TRIO--FBXL7	27	6	TRIO	38970	chr5:14420130:+	FBXL7	77700	chr5:15616092:+	ONLY_REF_SPLICE	YES	6	1	0.85	0.97	0.2659	0.0591	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+	SKBR3_BREAST	0.85	0.97	0.325	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	DHX35--ITCH	20	19	DHX35	2243	chr20:37597857:+	ITCH	30373	chr20:32957200:+	ONLY_REF_SPLICE	YES	24	3	0.62	0.93	0.197	0.1871	DHX35->DEAH-box_helicase_35,chr20:37590942-37668366:+,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	SKBR3_BREAST	0.62	0.93	0.3841	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	KPNA6--KHDRBS1	22	10	KPNA6	10790	chr1:32628914:+	KHDRBS1	35688	chr1:32525764:+	ONLY_REF_SPLICE	YES	39	1	0.45	0.97	0.2166	0.0985	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},LOCAL_REARRANGEMENT:+:[47188],KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6,KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+	SKBR3_BREAST	0.45	0.97	0.3151	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	CSNK2A1--PREX1	23	0	CSNK2A1	3515	chr20:508577:-	PREX1	58980	chr20:47249177:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2265	0	CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1	SKBR3_BREAST	1	1	0.2265	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	TBC1D31--ZNF704	20	10	TBC1D31	8244	chr8:124096580:+	ZNF704	36178	chr8:81733850:-	ONLY_REF_SPLICE	YES	106	66	0.22	0.31	0.197	0.0985	TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+,ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704	SKBR3_BREAST	0.22	0.31	0.2955	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	SAMD12--MRPL13	13	19	SAMD12	3503	chr8:119452071:-	MRPL13	22212	chr8:121455548:-	ONLY_REF_SPLICE	YES	40	55	0.44	0.37	0.128	0.1871	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	SKBR3_BREAST	0.37	0.44	0.3151	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	8	37	TATDN1	1531	chr8:125551169:-	GSDMB	24410	chr17:38065295:-	ONLY_REF_SPLICE	YES	5	512	0.9	0.08	0.0788	0.3644	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.08	0.9	0.4432	TRUE	0	1	0	3	1	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	2	60	TATDN1	2128	chr8:125550572:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	6	12	0.91	0.84	0.0197	0.5909	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.84	0.91	0.6106	TRUE	0	1	0	3	1	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	9	30	TATDN1	1531	chr8:125551169:-	GSDMB	26465	chr17:38063240:-	ONLY_REF_SPLICE	YES	5	952	0.89	0.04	0.0886	0.2954	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.04	0.89	0.384	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	PBRM1--WDR82	15	4	PBRM1	6967	chr3:52702514:-	WDR82	48674	chr3:52304825:-	ONLY_REF_SPLICE	YES	8	22	0.7	0.46	0.1477	0.0394	PBRM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:52579368-52719933:-,polybromo_1,WDR82->Oncogene{Bushman},WD_repeat_domain_82,chr3:52288437-52322036:-	SKBR3_BREAST	0.46	0.7	0.1871	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TAF2--COLEC10	13	11	TAF2	10884	chr8:120805606:-	COLEC10	41258	chr8:120114587:+	ONLY_REF_SPLICE	YES	94	0	0.2	1	0.128	0.1083	TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	SKBR3_BREAST	0.2	1	0.2363	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	SAMD12--MRPL13	13	6	SAMD12	2373	chr8:119592954:-	MRPL13	22212	chr8:121455548:-	ONLY_REF_SPLICE	YES	46	55	0.29	0.26	0.128	0.0591	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	SKBR3_BREAST	0.26	0.29	0.1871	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	9	11	TATDN1	1434	chr8:125551266:-	GSDMB	24410	chr17:38065295:-	ONLY_REF_SPLICE	YES	0	512	1	0.04	0.0886	0.1083	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.04	1	0.1969	TRUE	0	1	0	3	1	TRUE	ACH-000017
SKBR3_BREAST	SLC45A4--RP11-89M16.1	11	1	SLC45A4	2851	chr8:142264088:-	RP11-89M16.1	25605	chr8:129440630:-	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.1083	0.0098	SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4,RP11-89M16.1->chr8:129417515-129576925:-	SKBR3_BREAST	0.86	1	0.1181	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	MECOM--LMCD1-AS1	9	1	MECOM	3693	chr3:169098975:-	LMCD1-AS1	49133	chr3:8033989:-	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0886	0.0098	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,LMCD1-AS1->LMCD1_antisense_RNA_1_(head_to_head),chr3:7994492-8653610:-	SKBR3_BREAST	0.5	1	0.0984	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	ANKHD1--PCDH1	3	23	ANKHD1	7029	chr5:139825560:+	PCDH1	55103	chr5:141235827:-	ONLY_REF_SPLICE	YES	81	4	0.24	0.87	0.0295	0.2265	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,PCDH1->chr5:141232938-141258811:-,protocadherin_1	SKBR3_BREAST	0.24	0.87	0.256	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	SAMD12--MRPL13	4	19	SAMD12	3508	chr8:119452066:-	MRPL13	22212	chr8:121455548:-	INCL_NON_REF_SPLICE	YES	43	55	0.35	0.29	0.0394	0.1871	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	SKBR3_BREAST	0.29	0.35	0.2265	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	1	31	TATDN1	1531	chr8:125551169:-	GSDMB	25238	chr17:38064467:-	ONLY_REF_SPLICE	YES	5	736	0.86	0.04	0.0098	0.3053	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.04	0.86	0.3151	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	MTSS1--RP11-941H19.3	7	1	MTSS1	11334	chr8:125597328:-	RP11-941H19.3	31995	chr8:81201052:+	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.0689	0.0098	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-941H19.3->chr8:81178389-81252075:+	SKBR3_BREAST	0.53	1	0.0787	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	PVT1--LINC00536	5	7	PVT1	20335	chr8:129082518:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	14	0	0.46	1	0.0492	0.0689	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	SKBR3_BREAST	0.46	1	0.1181	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	3	13	TATDN1	1434	chr8:125551266:-	GSDMB	23532	chr17:38066173:-	INCL_NON_REF_SPLICE	YES	0	13	1	0.55	0.0295	0.128	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.55	1	0.1575	TRUE	0	1	0	3	1	TRUE	ACH-000017
SKBR3_BREAST	CTC-559E9.6--MTSS1	4	3	CTC-559E9.6	4541	chr19:19900630:+	MTSS1	18871	chr8:125603476:-	ONLY_REF_SPLICE	YES	0	11	1	0.39	0.0394	0.0295	CTC-559E9.6->chr19:19887411-19945736:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	SKBR3_BREAST	0.39	1	0.0689	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	PVT1--LINC00536	3	7	PVT1	20424	chr8:129082607:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	12	0	0.45	1	0.0295	0.0689	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	SKBR3_BREAST	0.45	1	0.0984	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	SAMD12--MRPL13	1	13	SAMD12	3473	chr8:119452101:-	MRPL13	22212	chr8:121455548:-	ONLY_REF_SPLICE	NO	39	55	0.26	0.2	0.0098	0.128	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	SKBR3_BREAST	0.2	0.26	0.1378	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	ATAD5--TLK2	1	11	ATAD5	19649	chr17:29205114:+	TLK2	48337	chr17:60650576:+	ONLY_REF_SPLICE	YES	7	31	0.63	0.28	0.0098	0.1083	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2	SKBR3_BREAST	0.28	0.63	0.1181	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TAF2--COLEC10	1	11	TAF2	19415	chr8:120790259:-	COLEC10	41258	chr8:120114587:+	ONLY_REF_SPLICE	YES	141	0	0.08	1	0.0098	0.1083	TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	SKBR3_BREAST	0.08	1	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	SUMF1--LRRFIP2	1	10	SUMF1	7757	chr3:4452549:-	LRRFIP2	52453	chr3:37138151:-	ONLY_REF_SPLICE	YES	64	95	0.15	0.1	0.0098	0.0985	{Klijn_CCL:Breast=1},SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	SKBR3_BREAST	0.1	0.15	0.1083	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	BLOC1S6--AKAP13	3	1	BLOC1S6	1403	chr15:45879723:+	AKAP13	40961	chr15:86182605:+	ONLY_REF_SPLICE	YES	44	15	0.08	0.21	0.0295	0.0098	BLOC1S6->biogenesis_of_lysosomal_organelles_complex_1_subunit_6,chr15:45879321-45908197:+,AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+	SKBR3_BREAST	0.08	0.21	0.0393	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	VTCN1--PIK3CA	3	1	VTCN1	1111	chr1:117753446:-	PIK3CA	16605	chr3:178916538:+	ONLY_REF_SPLICE	YES	34	1	0.11	0.8	0.0295	0.0098	VTCN1->Oncogene{Bushman},V-set_domain_containing_T_cell_activation_inhibitor_1,chr1:117686209-117753556:-,PIK3CA->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr3:178865902-178957881:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_alpha	SKBR3_BREAST	0.11	0.8	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	EIF2B5--RP11-132N15.1	3	0	EIF2B5	2699	chr3:183854524:+	RP11-132N15.1	15394	chr3:187721776:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	EIF2B5->chr3:183852826-184402546:+,eukaryotic_translation_initiation_factor_2B_subunit_epsilon,RP11-132N15.1->chr3:187715210-187721778:-	SKBR3_BREAST	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	USP36--EIF3H	3	0	USP36	24168	chr17:76794482:-	EIF3H	34824	chr8:117768258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	NOL8--OMD	2	2	NOL8	4866	chr9:95083950:-	OMD	25581	chr9:95179856:-	ONLY_REF_SPLICE	YES	32	0	0.11	1	0.0197	0.0197	LOCAL_REARRANGEMENT:-:[88609],NOL8->chr9:95059640-95087918:-,nucleolar_protein_8,OMD->Oncogene{Bushman},chr9:95176527-95186743:-,osteomodulin	SKBR3_BREAST	0.11	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	PVT1--LINC00536	2	1	PVT1	13955	chr8:129001537:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0197	0.0098	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	SKBR3_BREAST	0.17	1	0.0295	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	C17orf76-AS1--PPA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	PPA2	26365	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	C17orf76-AS1->chr17:16342136-16381992:+,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	SKBR3_BREAST	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	CYTH1--EIF3H	2	0	CYTH1	1096	chr17:76778284:-	EIF3H	40624	chr8:117658842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	EIF2B5--RP11-132N15.1	2	0	EIF2B5	2699	chr3:183854524:+	RP11-132N15.1	16482	chr3:187715546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	EIF2B5->chr3:183852826-184402546:+,eukaryotic_translation_initiation_factor_2B_subunit_epsilon,RP11-132N15.1->chr3:187715210-187721778:-	SKBR3_BREAST	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	PVT1--LINC00536	1	4	PVT1	18060	chr8:129022690:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	NO	18	0	0.22	1	0.0098	0.0394	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	SKBR3_BREAST	0.22	1	0.0492	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	CTC-559E9.6--MTSS1	1	2	CTC-559E9.6	1393	chr19:19887803:+	MTSS1	18871	chr8:125603476:-	ONLY_REF_SPLICE	NO	2	11	0.6	0.21	0.0098	0.0197	CTC-559E9.6->chr19:19887411-19945736:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	SKBR3_BREAST	0.21	0.6	0.0295	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	MTSS1--RP11-941H19.3	1	2	MTSS1	12346	chr8:125592792:-	RP11-941H19.3	30856	chr8:81186340:+	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0098	0.0197	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-941H19.3->chr8:81178389-81252075:+	SKBR3_BREAST	0.3	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	MYO5B--CCDC11	1	2	MYO5B	6132	chr18:47563220:-	CCDC11	60285	chr18:47765075:-	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0098	0.0197	LOCAL_REARRANGEMENT:-:[32100],MYO5B->chr18:47349183-47721463:-,myosin_VB,CCDC11->chr18:47753563-47792892:-	SKBR3_BREAST	0.16	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	MTSS1--RP11-941H19.3	1	1	MTSS1	12346	chr8:125592792:-	RP11-941H19.3	31995	chr8:81201052:+	ONLY_REF_SPLICE	NO	7	0	0.22	1	0.0098	0.0098	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-941H19.3->chr8:81178389-81252075:+	SKBR3_BREAST	0.22	1	0.0196	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	PBRM1--WDR82	1	1	PBRM1	5819	chr3:52712516:-	WDR82	48674	chr3:52304825:-	ONLY_REF_SPLICE	YES	10	22	0.17	0.08	0.0098	0.0098	PBRM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:52579368-52719933:-,polybromo_1,WDR82->Oncogene{Bushman},WD_repeat_domain_82,chr3:52288437-52322036:-	SKBR3_BREAST	0.08	0.17	0.0196	TRUE	0	1	0	1	1	TRUE	ACH-000017
SKBR3_BREAST	PLCD4--CXCR2	1	1	PLCD4	4369	chr2:219480785:+	CXCR2	21675	chr2:218991014:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0098	0.0098	PLCD4->chr2:219472488-219501907:+,phospholipase_C_delta_4,CXCR2->C-X-C_motif_chemokine_receptor_2,chr2:218990012-219001976:+	SKBR3_BREAST	0.67	1	0.0196	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	PLCD4--CXCR2	1	1	PLCD4	4266	chr2:219480682:+	CXCR2	21675	chr2:218991014:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0098	0.0098	PLCD4->chr2:219472488-219501907:+,phospholipase_C_delta_4,CXCR2->C-X-C_motif_chemokine_receptor_2,chr2:218990012-219001976:+	SKBR3_BREAST	0.5	1	0.0196	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TMCC1--CDV3	1	1	TMCC1	1083	chr3:129612337:-	CDV3	28812	chr3:133302849:+	ONLY_REF_SPLICE	NO	1	42	0.67	0.05	0.0098	0.0098	TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1,CDV3->CDV3_homolog,chr3:133292574-133309105:+	SKBR3_BREAST	0.05	0.67	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000017
CL14_LARGE_INTESTINE	FGFRL1--IGF2	528	20	FGFRL1	8547	chr4:1020073:+	IGF2	23159	chr11:2152839:-	INCL_NON_REF_SPLICE	YES	198	7354	0.73	0.07	6.3101	0.239	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.07	0.73	6.5491	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	463	68	FGFRL1	8547	chr4:1020073:+	IGF2	22716	chr11:2153282:-	INCL_NON_REF_SPLICE	YES	198	3811	0.73	0.12	5.5333	0.8127	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.12	0.73	6.346	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	408	61	FGFRL1	8547	chr4:1020073:+	IGF2	22855	chr11:2153143:-	INCL_NON_REF_SPLICE	YES	198	5285	0.7	0.08	4.876	0.729	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.08	0.7	5.605	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	395	50	FGFRL1	8547	chr4:1020073:+	IGF2	22967	chr11:2153031:-	INCL_NON_REF_SPLICE	YES	198	5682	0.69	0.07	4.7207	0.5976	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.07	0.69	5.3183	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	304	40	FGFRL1	8547	chr4:1020073:+	IGF2	23024	chr11:2152974:-	INCL_NON_REF_SPLICE	YES	198	6104	0.63	0.05	3.6331	0.478	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.05	0.63	4.1111	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	124	64	FGFRL1	8547	chr4:1020073:+	IGF2	22744	chr11:2153254:-	INCL_NON_REF_SPLICE	YES	198	4785	0.49	0.04	1.4819	0.7649	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.04	0.49	2.2468	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	120	64	FGFRL1	8547	chr4:1020073:+	IGF2	22763	chr11:2153235:-	INCL_NON_REF_SPLICE	YES	198	4182	0.48	0.04	1.4341	0.7649	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.04	0.48	2.199	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	PKN2--HIAT1	37	13	PKN2	3863	chr1:89226059:+	HIAT1	27882	chr1:100515465:+	ONLY_REF_SPLICE	YES	25	80	0.67	0.38	0.4422	0.1554	PKN2->chr1:89149905-89301938:+,protein_kinase_N2,HIAT1->chr1:100503653-100548933:+	CL14_LARGE_INTESTINE	0.38	0.67	0.5976	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	PPIG--ITGA6	37	13	PPIG	1151	chr2:170441000:+	ITGA6	22139	chr2:173330267:+	ONLY_REF_SPLICE	YES	19	108	0.72	0.32	0.4422	0.1554	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6	CL14_LARGE_INTESTINE	0.32	0.72	0.5976	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	EEA1--RP11-511B23.2	20	9	EEA1	1289	chr12:93322819:-	RP11-511B23.2	50276	chr12:93398374:-	ONLY_REF_SPLICE	YES	7	0	0.81	1	0.239	0.1076	LOCAL_REARRANGEMENT:-:[74084],EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,RP11-511B23.2->chr12:93397191-93609455:-	CL14_LARGE_INTESTINE	0.81	1	0.3466	TRUE	0	1	0	1	1	TRUE	ACH-000342
CL14_LARGE_INTESTINE	BEND3--RP1-60O19.1	13	7	BEND3	5222	chr6:107419755:-	RP1-60O19.1	24503	chr6:107197663:-	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.1554	0.0837	BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-,RP1-60O19.1->chr6:107165327-107235416:-	CL14_LARGE_INTESTINE	0.91	1	0.2391	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	PPIG--ITGA6	8	14	PPIG	1560	chr2:170441409:+	ITGA6	22139	chr2:173330267:+	ONLY_REF_SPLICE	YES	38	108	0.37	0.17	0.0956	0.1673	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6	CL14_LARGE_INTESTINE	0.17	0.37	0.2629	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	BEND3--RP1-60O19.1	6	3	BEND3	5222	chr6:107419755:-	RP1-60O19.1	25658	chr6:107195163:-	ONLY_REF_SPLICE	YES	2	3	0.82	0.75	0.0717	0.0359	BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-,RP1-60O19.1->chr6:107165327-107235416:-	CL14_LARGE_INTESTINE	0.75	0.82	0.1076	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	BEND3--RP1-60O19.1	3	7	BEND3	5222	chr6:107419755:-	RP1-60O19.1	22088	chr6:107204136:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0359	0.0837	BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-,RP1-60O19.1->chr6:107165327-107235416:-	CL14_LARGE_INTESTINE	0.83	1	0.1196	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	EEA1--RP11-511B23.2	1	12	EEA1	1289	chr12:93322819:-	RP11-511B23.2	47667	chr12:93524909:-	ONLY_REF_SPLICE	YES	7	0	0.65	1	0.012	0.1434	LOCAL_REARRANGEMENT:-:[74084],EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,RP11-511B23.2->chr12:93397191-93609455:-	CL14_LARGE_INTESTINE	0.65	1	0.1554	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	EEA1--RP11-511B23.2	1	10	EEA1	1289	chr12:93322819:-	RP11-511B23.2	48813	chr12:93521902:-	ONLY_REF_SPLICE	YES	7	0	0.61	1	0.012	0.1195	LOCAL_REARRANGEMENT:-:[74084],EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,RP11-511B23.2->chr12:93397191-93609455:-	CL14_LARGE_INTESTINE	0.61	1	0.1315	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	EREG--RPS28	3	0	EREG	1134	chr4:75230993:+	RPS28	13492	chr19:8386407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	EREG->chr4:75230860-75254468:+,epiregulin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CL14_LARGE_INTESTINE	1	1	0.0359	TRUE	0	0	0	3	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	TMEM181--DYNLT1	1	1	TMEM181	6914	chr6:159010814:+	DYNLT1	25977	chr6:159062392:-	ONLY_REF_SPLICE	YES	53	3	0.04	0.4	0.012	0.012	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Testis=1},LOCAL_INVERSION:+:-:[1046],TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	CL14_LARGE_INTESTINE	0.04	0.4	0.024	TRUE	0	2	0	2	0	TRUE	ACH-000342
CHP126_AUTONOMIC_GANGLIA	DDX1--HNRNPA1	411	0	DDX1	21762	chr2:15770231:+	HNRNPA1	29401	chr12:54677611:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	4.0678	0	DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	CHP126_AUTONOMIC_GANGLIA	1	1	4.0678	TRUE	0	0	0	1	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	UBQLN1--GKAP1	343	85	UBQLN1	1704	chr9:86322415:-	GKAP1	31396	chr9:86368274:-	ONLY_REF_SPLICE	YES	114	31	0.79	0.93	3.3948	0.8413	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[31218],UBQLN1->chr9:86274878-86323118:-,ubiquilin_1,GKAP1->G_kinase_anchoring_protein_1,chr9:86354336-86444431:-	CHP126_AUTONOMIC_GANGLIA	0.79	0.93	4.2361	TRUE	0	0	0	2	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	358	2	PTMS	4182	chr12:6879165:+	PTMA	13146	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	414	4374	0.47	0.08	3.5432	0.0198	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0.08	0.47	3.563	TRUE	0	1	0	1	1	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMA--PTMS	316	3	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	4355	303	0.07	0.51	3.1276	0.0297	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CHP126_AUTONOMIC_GANGLIA	0.07	0.51	3.1573	TRUE	0	0	0	16	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	UBQLN1--GKAP1	16	89	UBQLN1	1704	chr9:86322415:-	GKAP1	30243	chr9:86383885:-	ONLY_REF_SPLICE	YES	114	24	0.48	0.81	0.1584	0.8809	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[31218],UBQLN1->chr9:86274878-86323118:-,ubiquilin_1,GKAP1->G_kinase_anchoring_protein_1,chr9:86354336-86444431:-	CHP126_AUTONOMIC_GANGLIA	0.48	0.81	1.0393	TRUE	0	0	0	1	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--AC010729.1	15	7	NBAS	5992	chr2:15691617:-	AC010729.1	63986	chr2:5841598:+	ONLY_REF_SPLICE	YES	27	16	0.45	0.58	0.1485	0.0693	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC010729.1->chr2:5836352-5848227:+	CHP126_AUTONOMIC_GANGLIA	0.45	0.58	0.2178	TRUE	0	0	0	1	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	DDX1--HNRNPA1	3	0	DDX1	22456	chr2:15770925:+	HNRNPA1	29419	chr12:54677629:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	CHP126_AUTONOMIC_GANGLIA	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	DFNB59--TDP1	2	0	DFNB59	1334	chr2:179316496:+	TDP1	32773	chr14:90485660:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	DFNB59->chr2:179316163-179326117:+,deafness,_autosomal_recessive_59,TDP1->chr14:90421283-90511106:+,tyrosyl-DNA_phosphodiesterase_1	CHP126_AUTONOMIC_GANGLIA	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	ELAVL3--MIOS	2	0	ELAVL3	1447	chr19:11591415:-	MIOS	19907	chr7:7622749:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	ELAVL3->ELAV_like_neuron-specific_RNA_binding_protein_3,chr19:11562141-11591861:-,MIOS->chr7:7606503-7648560:+,missing_oocyte,_meiosis_regulator,_homolog_(Drosophila)	CHP126_AUTONOMIC_GANGLIA	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	ZNF543--RP11-395B7.2	2	0	ZNF543	2490	chr19:57835176:+	RP11-395B7.2	14780	chr7:100607265:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	ZNF543->chr19:57831877-57842144:+,zinc_finger_protein_543,RP11-395B7.2->chr7:100606878-100611410:-	CHP126_AUTONOMIC_GANGLIA	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000136
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	1244	325	TCF3	13408	chr19:1619110:-	PBX1	46216	chr1:164761731:+	ONLY_REF_SPLICE	YES	588	0	0.73	1	12.4391	3.2498	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	15.6889	TRUE	0	0	0	4	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	22	6	TCF3	10234	chr19:1622396:-	PBX1	46419	chr1:164761934:+	INCL_NON_REF_SPLICE	YES	428	173	0.06	0.14	0.22	0.06	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.14	0.28	TRUE	0	0	0	4	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444A22.1--AC007131.2	8	2	RP11-444A22.1	2236	chr2:60054281:-	AC007131.2	8658	chr2:59946792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.08	0.02	GTEx_FI:{Testis=[count:11=pct:10.5]},RP11-444A22.1->chr2:59445815-60327335:-,AC007131.2->chr2:59465851-59960531:-	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1	TRUE	0	0	1	2	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	7	3	CCDC26	6922	chr8:130365050:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	23	3	0.3	0.77	0.07	0.03	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.77	0.1	TRUE	0	0	0	6	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--IGHV3-29	3	0	CPSF6	11046	chr12:69656342:+	IGHV3-29	20032	chr14:106787666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.03	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IGHV3-29->chr14:106787368-106787804:-,immunoglobulin_heavy_variable_3-29_(pseudogene)	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.03	TRUE	0	0	0	3	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--IRF2BP2	2	0	CPSF6	11046	chr12:69656342:+	IRF2BP2	21567	chr1:234743598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	9	0	3	1	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCUN1D2--TFDP1	2	0	DCUN1D2	1286	chr13:114144982:-	TFDP1	18891	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[93746],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	1	0	6	1	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPM--ELAVL1	2	0	HNRNPM	1345	chr19:8509995:+	ELAVL1	24831	chr19:8056715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	HGNC_GENEFAM,HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	0	0	3	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NBAS--FAM49A	2	0	NBAS	5992	chr2:15691617:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	0	0	5	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PKN2--CORO1C	2	0	PKN2	1407	chr1:89150311:+	CORO1C	33293	chr12:109072170:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	PKN2->chr1:89149905-89301938:+,protein_kinase_N2,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM26--SLAIN1	2	0	RBM26	1774	chr13:79979839:-	SLAIN1	37373	chr13:78317151:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-,SLAIN1->SLAIN_motif_family_member_1,chr13:78272023-78338377:+	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM21--ATP6V0E1	2	0	TIMM21	1599	chr18:71816344:+	ATP6V0E1	13044	chr5:172461402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	TIMM21->chr18:71815746-71826197:+,translocase_of_inner_mitochondrial_membrane_21,ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	1	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	16	3	0.11	0.4	0.01	0.01	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.4	0.02	TRUE	0	2	0	11	2	TRUE	ACH-000032
RDES_BONE	EWSR1--FLI1	325	105	EWSR1	11554	chr22:29683123:+	FLI1	35098	chr11:128651853:+	ONLY_REF_SPLICE	YES	316	0	0.58	1	3.0138	0.9737	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	RDES_BONE	0.58	1	3.9875	TRUE	0	0	0	5	0	TRUE	ACH-000041
RDES_BONE	LAS1L--NCL	9	0	LAS1L	13911	chrX:64737973:-	NCL	25282	chr2:232325470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	RDES_BONE	1	1	0.0835	TRUE	0	0	0	3	0	TRUE	ACH-000041
RDES_BONE	AL136376.1--RPS28	7	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RDES_BONE	1	1	0.0649	TRUE	0	0	0	12	0	TRUE	ACH-000041
RDES_BONE	LAS1L--NCL	4	0	LAS1L	13887	chrX:64737997:-	NCL	25264	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	RDES_BONE	1	1	0.0371	TRUE	0	0	0	3	0	TRUE	ACH-000041
RDES_BONE	PTPRJ--DNHD1	3	1	PTPRJ	1448	chr11:48002560:+	DNHD1	46468	chr11:6554911:+	ONLY_REF_SPLICE	YES	0	12	1	0.25	0.0278	0.0093	PTPRJ->Oncogene{Bushman},chr11:48002113-48189670:+,protein_tyrosine_phosphatase,_receptor_type_J,DNHD1->chr11:6518490-6614988:+,dynein_heavy_chain_domain_1	RDES_BONE	0.25	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000041
RDES_BONE	LAS1L--NCL	3	0	LAS1L	13890	chrX:64737994:-	NCL	25276	chr2:232325476:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	RDES_BONE	1	1	0.0278	TRUE	0	0	0	3	0	TRUE	ACH-000041
RDES_BONE	CCT7--RP11-566K11.7	2	0	CCT7	6669	chr2:73467671:+	RP11-566K11.7	19535	chr16:89976999:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CCT7->chaperonin_containing_TCP1_subunit_7,chr2:73460548-73480149:+,RP11-566K11.7->chr16:89972565-89984641:+	RDES_BONE	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000041
RDES_BONE	EED--PICALM	2	0	EED	1800	chr11:85956385:+	PICALM	22249	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	EED->chr11:85955586-85989855:+,embryonic_ectoderm_development,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	RDES_BONE	1	1	0.0185	TRUE	0	0	0	3	0	TRUE	ACH-000041
RDES_BONE	NOC4L--WRAP73	2	0	NOC4L	2218	chr12:132630210:+	WRAP73	13278	chr1:3564124:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,WRAP73->WD_repeat_containing,_antisense_to_TP73,chr1:3547331-3569325:-	RDES_BONE	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000041
RDES_BONE	PTPRJ--DNHD1	2	0	PTPRJ	1448	chr11:48002560:+	DNHD1	56635	chr11:6577913:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	PTPRJ->Oncogene{Bushman},chr11:48002113-48189670:+,protein_tyrosine_phosphatase,_receptor_type_J,DNHD1->chr11:6518490-6614988:+,dynein_heavy_chain_domain_1	RDES_BONE	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000041
RDES_BONE	RPTOR--ATP5G2	2	0	RPTOR	14542	chr17:78797023:+	ATP5G2	52255	chr12:54066429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	RDES_BONE	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000041
RDES_BONE	RNASEH2C--RP11-158J3.2	1	1	RNASEH2C	2267	chr11:65487152:-	RP11-158J3.2	8698	chr5:63276870:-	ONLY_REF_SPLICE	YES	55	0	0.04	1	0.0093	0.0093	RNASEH2C->chr11:65482367-65488418:-,ribonuclease_H2_subunit_C,RP11-158J3.2->chr5:63253720-63276870:-	RDES_BONE	0.04	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000041
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BIN2--CELA1	558	46	BIN2	1647	chr12:51717806:-	CELA1	26085	chr12:51723617:-	ONLY_REF_SPLICE	YES	30	0	0.95	1	5.7981	0.478	LOCAL_REARRANGEMENT:-:[3775],BIN2->bridging_integrator_2,chr12:51674822-51718452:-,CELA1->Oncogene{Bushman},chr12:51722227-51740463:-,chymotrypsin_like_elastase_family_member_1	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	6.2761	TRUE	0	0	0	1	0	TRUE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHL42--SMCO2	6	2	KLHL42	2183	chr12:27934135:+	SMCO2	18640	chr12:27627719:+	ONLY_REF_SPLICE	YES	30	0	0.21	1	0.0623	0.0208	KLHL42->chr12:27932953-27955973:+,kelch_like_family_member_42,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0831	TRUE	0	0	0	1	0	TRUE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SNX5	4	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	TRUE	0	5	0	11	0	TRUE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNB1	3	1	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	8	5	0.33	0.44	0.0312	0.0104	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.44	0.0416	TRUE	0	10	0	7	3	TRUE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ACAP1	2	0	RCC1	2920	chr1:28835417:+	ACAP1	22150	chr17:7246698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ACAP1->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_1,Oncogene{Bushman},chr17:7239848-7254797:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0208	TRUE	0	0	0	3	0	TRUE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHL42--SMCO2	1	2	KLHL42	2183	chr12:27934135:+	SMCO2	16154	chr12:27623555:+	ONLY_REF_SPLICE	YES	30	0	0.09	1	0.0104	0.0208	KLHL42->chr12:27932953-27955973:+,kelch_like_family_member_42,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--DMRTA1	1	1	MTAP	1239	chr9:21802780:+	DMRTA1	25056	chr9:22451063:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0104	0.0104	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000636
MSTO211H_PLEURA	SETD3--CCDC85C	54	20	SETD3	1152	chr14:99947065:-	CCDC85C	29379	chr14:99988577:-	ONLY_REF_SPLICE	YES	28	39	0.73	0.65	0.8237	0.3051	LOCAL_REARRANGEMENT:-:[30387],SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C	MSTO211H_PLEURA	0.65	0.73	1.1288	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	STXBP5--RP11-489O18.1	41	30	STXBP5	11120	chr6:147612308:+	RP11-489O18.1	37371	chr8:139085144:+	ONLY_REF_SPLICE	YES	14	0	0.84	1	0.6254	0.4576	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-489O18.1->chr8:139075511-139085483:+	MSTO211H_PLEURA	0.84	1	1.083	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	WDR36--NREP-AS1	38	11	WDR36	7672	chr5:110438098:+	NREP-AS1	29868	chr5:111275734:+	ONLY_REF_SPLICE	YES	50	0	0.49	1	0.5797	0.1678	WDR36->WD_repeat_domain_36,chr5:110427414-110466200:+,NREP-AS1->NREP_antisense_RNA_1,chr5:111248205-111353006:+	MSTO211H_PLEURA	0.49	1	0.7475	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	PVT1--CASC11	12	19	PVT1	1202	chr8:128806980:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	3024	0	0.01	1	0.183	0.2898	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	MSTO211H_PLEURA	0.01	1	0.4728	TRUE	0	5	0	3	5	TRUE	ACH-000335
MSTO211H_PLEURA	SETD3--CCDC85C	6	20	SETD3	1152	chr14:99947065:-	CCDC85C	29382	chr14:99988574:-	INCL_NON_REF_SPLICE	YES	28	38	0.48	0.41	0.0915	0.3051	LOCAL_REARRANGEMENT:-:[30387],SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C	MSTO211H_PLEURA	0.41	0.48	0.3966	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	AGO2--PROM1	10	0	AGO2	1135	chr8:141645584:-	PROM1	34304	chr4:16077741:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1525	0	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,PROM1->chr4:15964699-16086001:-,prominin_1	MSTO211H_PLEURA	1	1	0.1525	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	PVT1--CASC11	4	19	PVT1	2457	chr8:128808254:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	3176	0	0.01	1	0.061	0.2898	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	MSTO211H_PLEURA	0.01	1	0.3508	TRUE	0	2	0	1	2	TRUE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	5	11	ABCD4	13457	chr14:74754910:-	ZFYVE1	23951	chr14:73460065:-	ONLY_REF_SPLICE	YES	63	11	0.2	0.59	0.0763	0.1678	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	0.2	0.59	0.2441	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	PROM1--TPGS1	6	3	PROM1	8824	chr4:16077310:-	TPGS1	50838	chr19:518889:+	ONLY_REF_SPLICE	YES	1	27	0.9	0.25	0.0915	0.0458	PROM1->chr4:15964699-16086001:-,prominin_1,TPGS1->chr19:507299-519654:+,tubulin_polyglutamylase_complex_subunit_1	MSTO211H_PLEURA	0.25	0.9	0.1373	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	4	9	ABCD4	12948	chr14:74755419:-	ZFYVE1	23951	chr14:73460065:-	ONLY_REF_SPLICE	YES	55	11	0.19	0.54	0.061	0.1373	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	0.19	0.54	0.1983	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	3	12	ABCD4	13850	chr14:74754517:-	ZFYVE1	23951	chr14:73460065:-	INCL_NON_REF_SPLICE	YES	49	11	0.23	0.58	0.0458	0.183	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	0.23	0.58	0.2288	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	ACER2--TEK	4	5	ACER2	3246	chr9:19424839:+	TEK	16140	chr9:27172614:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.061	0.0763	ACER2->alkaline_ceramidase_2,chr9:19408925-19452018:+,TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+	MSTO211H_PLEURA	0.9	1	0.1373	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	SETD3--CCDC85C	1	14	SETD3	1152	chr14:99947065:-	CCDC85C	30487	chr14:99983520:-	ONLY_REF_SPLICE	YES	28	53	0.35	0.22	0.0153	0.2136	LOCAL_REARRANGEMENT:-:[30387],SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C	MSTO211H_PLEURA	0.22	0.35	0.2289	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	2	8	ABCD4	12181	chr14:74756186:-	ZFYVE1	23951	chr14:73460065:-	ONLY_REF_SPLICE	YES	29	11	0.26	0.48	0.0305	0.122	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	0.26	0.48	0.1525	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	FBXW7--RP11-18H21.2	2	6	FBXW7	2161	chr4:153456093:-	RP11-18H21.2	28520	chr4:153069278:-	ONLY_REF_SPLICE	YES	10	0	0.44	1	0.0305	0.0915	FBXW7->ArcherDX_panel,F-box_and_WD_repeat_domain_containing_7,FoundationOne_panel,Oncogene{Bushman},chr4:153242410-153457253:-,RP11-18H21.2->chr4:153067537-153099725:-	MSTO211H_PLEURA	0.44	1	0.122	TRUE	0	1	0	1	1	TRUE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	1	9	ABCD4	13004	chr14:74755363:-	ZFYVE1	23951	chr14:73460065:-	ONLY_REF_SPLICE	YES	57	11	0.15	0.48	0.0153	0.1373	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	0.15	0.48	0.1526	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	3	0	ABCD4	1182	chr14:74769578:-	ZFYVE1	23951	chr14:73460065:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	1	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	2	4	ABCD4	11373	chr14:74756994:-	ZFYVE1	23951	chr14:73460065:-	ONLY_REF_SPLICE	YES	42	11	0.12	0.35	0.0305	0.061	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	0.12	0.35	0.0915	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	GPI--VIM	3	0	GPI	7034	chr19:34868685:+	VIM	23891	chr10:17271298:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase,VIM->chr10:17270258-17279592:+,vimentin	MSTO211H_PLEURA	1	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	WDR36--NREP-AS1	1	8	WDR36	6617	chr5:110436420:+	NREP-AS1	29868	chr5:111275734:+	ONLY_REF_SPLICE	NO	63	0	0.12	1	0.0153	0.122	WDR36->WD_repeat_domain_36,chr5:110427414-110466200:+,NREP-AS1->NREP_antisense_RNA_1,chr5:111248205-111353006:+	MSTO211H_PLEURA	0.12	1	0.1373	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	SNX29--MMP28	2	3	SNX29	19351	chr16:12223615:+	MMP28	42751	chr17:34106327:-	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0305	0.0458	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,MMP28->chr17:34083268-34122711:-,matrix_metallopeptidase_28	MSTO211H_PLEURA	0.5	1	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	0	0	10	0	TRUE	ACH-000335
MSTO211H_PLEURA	EXOSC5--PIGQ	2	0	EXOSC5	4884	chr19:41895670:-	PIGQ	15704	chr16:624066:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	EXOSC5->chr19:41892279-41903384:-,exosome_component_5,PIGQ->chr16:616995-634136:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_Q	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	PRIM2--CENPQ	2	0	PRIM2	8956	chr6:57246966:+	CENPQ	32606	chr6:49459857:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,CENPQ->centromere_protein_Q,chr6:49431091-49460820:+	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	RP11-440L14.1--CTBP1	2	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	2	0	7	2	TRUE	ACH-000335
MSTO211H_PLEURA	RP4-717I23.3--EVI5	2	0	RP4-717I23.3	9665	chr1:93790192:-	EVI5	29202	chr1:93170301:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	RP4-717I23.3->chr1:93727743-93811582:-,EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	SOCS2-AS1--NPEPPS	2	0	SOCS2-AS1	6468	chr12:93938847:-	NPEPPS	39267	chr17:45695716:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	SOCS2-AS1->SOCS2_antisense_RNA_1,chr12:93936239-93965544:-,NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	ZNF331--NT5C2	2	0	ZNF331	7495	chr19:54042536:+	NT5C2	28544	chr10:104871562:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,NT5C2->5'-nucleotidase,_cytosolic_II,chr10:104845940-104953056:-	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000335
NCIH1341_LUNG	STK40--OSCP1	38	19	STK40	6857	chr1:36826822:-	OSCP1	24864	chr1:36904511:-	ONLY_REF_SPLICE	YES	45	47	0.56	0.55	0.4081	0.204	LOCAL_REARRANGEMENT:-:[29931],STK40->chr1:36805225-36851497:-,serine/threonine_kinase_40,OSCP1->chr1:36881428-36916086:-,organic_solute_carrier_partner_1	NCIH1341_LUNG	0.55	0.56	0.6121	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	STK40--OSCP1	9	6	STK40	1174	chr1:36851324:-	OSCP1	24864	chr1:36904511:-	ONLY_REF_SPLICE	YES	33	47	0.31	0.24	0.0966	0.0644	LOCAL_REARRANGEMENT:-:[29931],STK40->chr1:36805225-36851497:-,serine/threonine_kinase_40,OSCP1->chr1:36881428-36916086:-,organic_solute_carrier_partner_1	NCIH1341_LUNG	0.24	0.31	0.161	TRUE	0	1	0	1	1	TRUE	ACH-000129
NCIH1341_LUNG	STK40--OSCP1	4	8	STK40	3533	chr1:36833453:-	OSCP1	24864	chr1:36904511:-	ONLY_REF_SPLICE	YES	37	47	0.24	0.2	0.043	0.0859	LOCAL_REARRANGEMENT:-:[29931],STK40->chr1:36805225-36851497:-,serine/threonine_kinase_40,OSCP1->chr1:36881428-36916086:-,organic_solute_carrier_partner_1	NCIH1341_LUNG	0.2	0.24	0.1289	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	ACO2--AP2S1	2	0	ACO2	1058	chr22:41865186:+	AP2S1	25209	chr19:47342835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	ACO2->aconitase_2,chr22:41865129-41924993:+,AP2S1->adaptor_related_protein_complex_2_sigma_1_subunit,chr19:47341393-47354249:-	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	ATP5B--RCC2	2	0	ATP5B	3612	chr12:57037187:-	RCC2	19764	chr1:17739674:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,RCC2->Oncogene{Bushman},chr1:17733256-17766220:-,regulator_of_chromosome_condensation_2	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	BASP1--RP11-321E2.3	2	0	BASP1	4506	chr5:17217919:+	RP11-321E2.3	12944	chr5:17441578:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+,RP11-321E2.3->chr5:17404128-17441803:+	NCIH1341_LUNG	1	1	0.0215	TRUE	0	4	0	4	3	TRUE	ACH-000129
NCIH1341_LUNG	CELF4--PTPN2	2	0	CELF4	1682	chr18:35145319:-	PTPN2	29231	chr18:12836890:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	CELF4->CUGBP,_Elav-like_family_member_4,chr18:34823010-35146000:-,PTPN2->chr18:12785477-12929642:-,protein_tyrosine_phosphatase,_non-receptor_type_2	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	IL4I1--CCT6A	2	0	IL4I1	1214	chr19:50432583:-	CCT6A	23681	chr7:56130376:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	IL4I1->chr19:50392911-50432796:-,interleukin_4_induced_1,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	MIR205HG--MCM7	2	0	MIR205HG	4006	chr1:209605170:+	MCM7	16381	chr7:99691024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	NCIH1341_LUNG	1	1	0.0215	TRUE	0	1	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	NUBP2--PLOD3	2	0	NUBP2	1606	chr16:1833507:+	PLOD3	14975	chr7:100856485:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,PLOD3->chr7:100849258-100861701:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_3	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	PPP4R1--CEP76	2	0	PPP4R1	2015	chr18:9614224:-	CEP76	38641	chr18:12686449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,CEP76->centrosomal_protein_76,chr18:12661832-12702776:-	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	RAB7A--GINS3	2	0	RAB7A	1238	chr3:128445202:+	GINS3	22007	chr16:58437002:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	RCC1--GNB1	2	0	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	NCIH1341_LUNG	1	1	0.0215	TRUE	0	10	0	7	3	TRUE	ACH-000129
NCIH1341_LUNG	SMC4--PGM2	2	0	SMC4	1476	chr3:160117537:+	PGM2	38451	chr4:37850143:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4,PGM2->chr4:37828255-37864558:+,phosphoglucomutase_2	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	SNX13--BZW2	2	0	SNX13	1218	chr7:17979907:-	BZW2	48208	chr7:16705062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Heart_-_Left_Ventricle=1},SNX13->chr7:17830385-17980124:-,sorting_nexin_13,BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	SSH1--NOM1	2	0	SSH1	6821	chr12:109212025:-	NOM1	39943	chr7:156758964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	SSH1->chr12:109176466-109251366:-,slingshot_protein_phosphatase_1,NOM1->chr7:156742417-156765876:+,nucleolar_protein_with_MIF4G_domain_1	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	TSPAN5--EIF4E	1	1	TSPAN5	1484	chr4:99579297:-	EIF4E	25720	chr4:99823133:-	ONLY_REF_SPLICE	YES	21	7	0.09	0.22	0.0107	0.0107	{Klijn_CCL:Lung=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	NCIH1341_LUNG	0.09	0.22	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000129
OVTOKO_OVARY	HIF1A--ICAM3	453	378	HIF1A	1327	chr14:62162557:+	ICAM3	22782	chr19:10450357:-	INCL_NON_REF_SPLICE	YES	349	9	0.7	0.99	4.5587	3.8039	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.7	0.99	8.3626	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	TKT--C3orf67	370	224	TKT	1217	chr3:53289852:-	C3orf67	46631	chr3:58739590:-	ONLY_REF_SPLICE	YES	1773	6	0.25	0.99	3.7234	2.2542	{Klijn_CCL:Ovary=1},TKT->chr3:53258723-53290068:-,transketolase,C3orf67->chr3:58703092-59035810:-,chromosome_3_open_reading_frame_67	OVTOKO_OVARY	0.25	0.99	5.9776	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	PUM1--UHRF1	306	6	PUM1	1376	chr1:31538463:-	UHRF1	36460	chr19:4910888:+	ONLY_REF_SPLICE	YES	1	52	1	0.86	3.0794	0.0604	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	OVTOKO_OVARY	0.86	1	3.1398	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	HIF1A--ICAM3	189	414	HIF1A	1327	chr14:62162557:+	ICAM3	22722	chr19:10450417:-	INCL_NON_REF_SPLICE	YES	349	0	0.63	1	1.902	4.1662	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.63	1	6.0682	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	KDM4B--NKAIN1	175	0	KDM4B	1117	chr19:4969241:+	NKAIN1	38121	chr1:31661034:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.7611	0	KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,NKAIN1->Na+/K+_transporting_ATPase_interacting_1,chr1:31652592-31712401:-	OVTOKO_OVARY	1	1	1.7611	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	HIF1A--ICAM3	92	135	HIF1A	1327	chr14:62162557:+	ICAM3	23515	chr19:10449624:-	ONLY_REF_SPLICE	YES	349	158	0.39	0.59	0.9258	1.3585	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.39	0.59	2.2843	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	LAMB2--GPR114	91	15	LAMB2	7412	chr3:49163180:-	GPR114	17127	chr16:57596296:+	ONLY_REF_SPLICE	YES	89	0	0.54	1	0.9158	0.1509	{Klijn_CCL:Ovary=1},LAMB2->chr3:49158547-49170551:-,laminin_subunit_beta_2,GPR114->chr16:57576333-57625593:+	OVTOKO_OVARY	0.54	1	1.0667	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	LAMC2--NPL	70	46	LAMC2	14817	chr1:183201992:+	NPL	46211	chr1:182797859:+	ONLY_REF_SPLICE	YES	204	0	0.36	1	0.7044	0.4629	LAMC2->chr1:183155373-183214035:+,laminin_subunit_gamma_2,NPL->N-acetylneuraminate_pyruvate_lyase_(dihydrodipicolinate_synthase),chr1:182758428-182799519:+	OVTOKO_OVARY	0.36	1	1.1673	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	LAMC2--NPL	62	61	LAMC2	15897	chr1:183203581:+	NPL	46211	chr1:182797859:+	ONLY_REF_SPLICE	YES	178	0	0.41	1	0.6239	0.6139	LAMC2->chr1:183155373-183214035:+,laminin_subunit_gamma_2,NPL->N-acetylneuraminate_pyruvate_lyase_(dihydrodipicolinate_synthase),chr1:182758428-182799519:+	OVTOKO_OVARY	0.41	1	1.2378	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	ELMSAN1--HNF1B	70	9	ELMSAN1	2618	chr14:74253805:-	HNF1B	35919	chr17:36070671:-	ONLY_REF_SPLICE	YES	3	28	0.96	0.74	0.7044	0.0906	ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,HNF1B->HNF1_homeobox_B,chr17:36046435-36105237:-	OVTOKO_OVARY	0.74	0.96	0.795	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	RP11-304L19.5--ABCA3	58	54	RP11-304L19.5	1216	chr16:2205144:-	ABCA3	5737	chr16:2379855:-	ONLY_REF_SPLICE	YES	74	0	0.6	1	0.5837	0.5434	RP11-304L19.5->chr16:2204798-2205359:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	OVTOKO_OVARY	0.6	1	1.1271	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	LLGL1--DRG2	57	22	LLGL1	1177	chr17:18129077:+	DRG2	27931	chr17:18005235:+	ONLY_REF_SPLICE	YES	17	63	0.82	0.56	0.5736	0.2214	{Klijn_CCL:Ovary=1},LLGL1->LLGL1,_scribble_cell_polarity_complex_component,chr17:18128901-18148189:+,DRG2->chr17:17991200-18011285:+,developmentally_regulated_GTP_binding_protein_2	OVTOKO_OVARY	0.56	0.82	0.795	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	UBTD1--RP11-452K12.4	55	15	UBTD1	1406	chr10:99259030:+	RP11-452K12.4	9115	chr10:99102564:+	ONLY_REF_SPLICE	YES	35	0	0.67	1	0.5535	0.1509	UBTD1->chr10:99258625-99330966:+,ubiquitin_domain_containing_1,RP11-452K12.4->chr10:99094321-99102770:+	OVTOKO_OVARY	0.67	1	0.7044	TRUE	0	1	0	1	1	TRUE	ACH-000663
OVTOKO_OVARY	RP11-304L19.5--ABCA3	30	57	RP11-304L19.5	1499	chr16:2204861:-	ABCA3	5737	chr16:2379855:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3019	0.5736	RP11-304L19.5->chr16:2204798-2205359:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	OVTOKO_OVARY	1	1	0.8755	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	RFC1--RP11-99J16__A.2	34	16	RFC1	18511	chr4:39310256:-	RP11-99J16__A.2	35806	chr1:230912494:-	ONLY_REF_SPLICE	YES	84	4	0.37	0.93	0.3422	0.161	RFC1->chr4:39289076-39367995:-,replication_factor_C_subunit_1,RP11-99J16__A.2->chr1:230846444-230931238:-	OVTOKO_OVARY	0.37	0.93	0.5032	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	HIF1A--ICAM3	4	135	HIF1A	1327	chr14:62162557:+	ICAM3	23218	chr19:10449921:-	ONLY_REF_SPLICE	YES	349	177	0.28	0.44	0.0403	1.3585	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.28	0.44	1.3988	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	VPS13C--NPM1P47	33	7	VPS13C	3286	chr15:62333523:-	NPM1P47	94083	chr15:62375188:-	INCL_NON_REF_SPLICE	YES	3	1	0.93	0.98	0.3321	0.0704	LOCAL_REARRANGEMENT:-:[21977],VPS13C->chr15:62144588-62352672:-,vacuolar_protein_sorting_13_homolog_C,NPM1P47->chr15:62374649-62375504:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_47	OVTOKO_OVARY	0.93	0.98	0.4025	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	PUM1--UHRF1	32	1	PUM1	1376	chr1:31538463:-	UHRF1	37623	chr19:4929234:+	ONLY_REF_SPLICE	YES	1	93	0.97	0.26	0.322	0.0101	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	OVTOKO_OVARY	0.26	0.97	0.3321	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	HIF1A--ICAM3	22	24	HIF1A	1327	chr14:62162557:+	ICAM3	24782	chr19:10446652:-	ONLY_REF_SPLICE	YES	349	381	0.12	0.11	0.2214	0.2415	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.11	0.12	0.4629	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MAPKAPK2--RASSF5	26	7	MAPKAPK2	1565	chr1:206858853:+	RASSF5	15305	chr1:206756601:+	ONLY_REF_SPLICE	YES	32	0	0.51	1	0.2616	0.0704	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[95673],MAPKAPK2->Oncogene{Bushman},chr1:206858289-206907628:+,mitogen-activated_protein_kinase-activated_protein_kinase_2,RASSF5->Ras_association_domain_family_member_5,chr1:206680879-206762616:+	OVTOKO_OVARY	0.51	1	0.332	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	TKT--C3orf67	4	81	TKT	1217	chr3:53289852:-	C3orf67	47795	chr3:58728299:-	ONLY_REF_SPLICE	YES	1773	10	0.05	0.89	0.0403	0.8151	{Klijn_CCL:Ovary=1},TKT->chr3:53258723-53290068:-,transketolase,C3orf67->chr3:58703092-59035810:-,chromosome_3_open_reading_frame_67	OVTOKO_OVARY	0.05	0.89	0.8554	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	CDK15--FOLR2	23	3	CDK15	7895	chr2:202688450:+	FOLR2	29869	chr11:71931914:+	ONLY_REF_SPLICE	YES	1	6	0.96	0.81	0.2315	0.0302	{Klijn_CCL:Ovary=1},CDK15->chr2:202655184-202760273:+,cyclin-dependent_kinase_15,FOLR2->chr11:71927645-71932994:+,folate_receptor_beta	OVTOKO_OVARY	0.81	0.96	0.2617	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	SYNRG--SLC22A20	18	19	SYNRG	14255	chr17:35928893:-	SLC22A20	47893	chr11:65003880:+	ONLY_REF_SPLICE	YES	7	1	0.84	0.97	0.1811	0.1912	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,SLC22A20->chr11:64981311-65010228:+,solute_carrier_family_22_member_20	OVTOKO_OVARY	0.84	0.97	0.3723	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	ELF2--CCDC148	21	6	ELF2	1252	chr4:140098121:-	CCDC148	41915	chr2:159035508:-	ONLY_REF_SPLICE	YES	12	0	0.69	1	0.2113	0.0604	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,CCDC148->chr2:159027593-159313265:-,coiled-coil_domain_containing_148	OVTOKO_OVARY	0.69	1	0.2717	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	HIF1A--ICAM3	5	66	HIF1A	1327	chr14:62162557:+	ICAM3	23600	chr19:10449539:-	ONLY_REF_SPLICE	YES	349	155	0.17	0.31	0.0503	0.6642	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.17	0.31	0.7145	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	CEP250--ATG3	18	12	CEP250	31279	chr20:34092833:+	ATG3	47667	chr3:112257027:-	ONLY_REF_SPLICE	YES	62	97	0.33	0.24	0.1811	0.1208	CEP250->centrosomal_protein_250,chr20:34042985-34099804:+,ATG3->autophagy_related_3,chr3:112251356-112280893:-	OVTOKO_OVARY	0.24	0.33	0.3019	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	CDK15--FOLR2	19	5	CDK15	7895	chr2:202688450:+	FOLR2	28695	chr11:71929605:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1912	0.0503	{Klijn_CCL:Ovary=1},CDK15->chr2:202655184-202760273:+,cyclin-dependent_kinase_15,FOLR2->chr11:71927645-71932994:+,folate_receptor_beta	OVTOKO_OVARY	0.96	1	0.2415	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	NEMF--RP11-58E21.5	20	0	NEMF	6160	chr14:50307436:-	RP11-58E21.5	36708	chr14:50555913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2013	0	NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,RP11-58E21.5->chr14:50505863-50555913:-	OVTOKO_OVARY	1	1	0.2013	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	RFC1--RP11-99J16__A.2	18	8	RFC1	17114	chr4:39313065:-	RP11-99J16__A.2	35806	chr1:230912494:-	ONLY_REF_SPLICE	YES	60	4	0.3	0.87	0.1811	0.0805	RFC1->chr4:39289076-39367995:-,replication_factor_C_subunit_1,RP11-99J16__A.2->chr1:230846444-230931238:-	OVTOKO_OVARY	0.3	0.87	0.2616	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	KTN1--RP13-735L24.1	17	11	KTN1	24024	chr14:56115588:+	RP13-735L24.1	60440	chr12:9547127:+	ONLY_REF_SPLICE	YES	275	0	0.09	1	0.1711	0.1107	KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1,RP13-735L24.1->chr12:9520060-9550213:+	OVTOKO_OVARY	0.09	1	0.2818	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	HIF1A--ICAM3	4	61	HIF1A	1327	chr14:62162557:+	ICAM3	23615	chr19:10449524:-	INCL_NON_REF_SPLICE	YES	349	174	0.16	0.27	0.0403	0.6139	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.16	0.27	0.6542	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	RP11-304L19.5--ABCA3	5	57	RP11-304L19.5	1504	chr16:2204856:-	ABCA3	5737	chr16:2379855:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0.5736	RP11-304L19.5->chr16:2204798-2205359:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	OVTOKO_OVARY	1	1	0.6239	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	NEMF--C14orf183	19	0	NEMF	6160	chr14:50307436:-	C14orf183	38874	chr14:50555913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1912	0	{Klijn_CCL:Ovary=1},NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,C14orf183->chr14:50550369-50559361:-	OVTOKO_OVARY	1	1	0.1912	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	RFC1--RP11-99J16__A.2	18	4	RFC1	17114	chr4:39313065:-	RP11-99J16__A.2	37474	chr1:230846599:-	ONLY_REF_SPLICE	YES	60	0	0.27	1	0.1811	0.0403	RFC1->chr4:39289076-39367995:-,replication_factor_C_subunit_1,RP11-99J16__A.2->chr1:230846444-230931238:-	OVTOKO_OVARY	0.27	1	0.2214	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	DCDC2--GPLD1	18	2	DCDC2	8984	chr6:24205230:-	GPLD1	18731	chr6:24489725:-	ONLY_REF_SPLICE	YES	258	0	0.07	1	0.1811	0.0201	LOCAL_REARRANGEMENT:-:[66513],DCDC2->chr6:24171984-24358280:-,doublecortin_domain_containing_2,GPLD1->chr6:24424793-24495433:-,glycosylphosphatidylinositol_specific_phospholipase_D1	OVTOKO_OVARY	0.07	1	0.2012	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	LLGL1--DRG2	15	12	LLGL1	1177	chr17:18129077:+	DRG2	29008	chr17:18007115:+	ONLY_REF_SPLICE	YES	17	57	0.61	0.32	0.1509	0.1208	{Klijn_CCL:Ovary=1},LLGL1->LLGL1,_scribble_cell_polarity_complex_component,chr17:18128901-18148189:+,DRG2->chr17:17991200-18011285:+,developmentally_regulated_GTP_binding_protein_2	OVTOKO_OVARY	0.32	0.61	0.2717	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	RP11-973F15.1--RP11-96B2.1	6	2	RP11-973F15.1	3763	chr8:123682599:-	RP11-96B2.1	7930	chr8:123499705:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0.0201	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	OVTOKO_OVARY	1	1	0.0805	TRUE	0	2	0	4	2	TRUE	ACH-000663
OVTOKO_OVARY	SBNO2--MED16	5	0	SBNO2	1112	chr19:1174171:-	MED16	41897	chr19:871253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0503	0	SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),MED16->chr19:867962-893218:-,mediator_complex_subunit_16	OVTOKO_OVARY	1	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	SBNO2--MED16	5	0	SBNO2	1112	chr19:1174171:-	MED16	41032	chr19:872118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0503	0	SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),MED16->chr19:867962-893218:-,mediator_complex_subunit_16	OVTOKO_OVARY	1	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	TRAK2--ALS2	4	1	TRAK2	6026	chr2:202272126:-	ALS2	29399	chr2:202633668:-	ONLY_REF_SPLICE	YES	26	9	0.16	0.36	0.0403	0.0101	TRAK2->chr2:202241930-202316302:-,trafficking_protein,_kinesin_binding_2,ALS2->ALS2,_alsin_Rho_guanine_nucleotide_exchange_factor,chr2:202565277-202645912:-	OVTOKO_OVARY	0.16	0.36	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	DCDC2--GPLD1	3	0	DCDC2	8984	chr6:24205230:-	GPLD1	20870	chr6:24480187:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:-:[66513],DCDC2->chr6:24171984-24358280:-,doublecortin_domain_containing_2,GPLD1->chr6:24424793-24495433:-,glycosylphosphatidylinositol_specific_phospholipase_D1	OVTOKO_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	KDM4B--NKAIN1	3	0	KDM4B	1117	chr19:4969241:+	NKAIN1	40424	chr1:31656861:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,NKAIN1->Na+/K+_transporting_ATPase_interacting_1,chr1:31652592-31712401:-	OVTOKO_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	RFC1--RP11-99J16__A.2	1	8	RFC1	17114	chr4:39313065:-	RP11-99J16__A.2	35564	chr1:230912736:-	ONLY_REF_SPLICE	NO	60	0	0.13	1	0.0101	0.0805	RFC1->chr4:39289076-39367995:-,replication_factor_C_subunit_1,RP11-99J16__A.2->chr1:230846444-230931238:-	OVTOKO_OVARY	0.13	1	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	ATRX--PGK1	2	0	ATRX	2348	chrX:76972608:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	OVTOKO_OVARY	1	1	0.0201	TRUE	1	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	POLE--ANKLE2	2	0	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	OVTOKO_OVARY	1	1	0.0201	TRUE	0	0	0	11	0	TRUE	ACH-000663
OVTOKO_OVARY	RP11-445F12.1--RP11-405F3.4	2	0	RP11-445F12.1	1098	chr17:35293863:-	RP11-405F3.4	14130	chr16:57720732:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RP11-445F12.1->chr17:35218935-35293960:-,RP11-405F3.4->chr16:57715036-57735642:-	OVTOKO_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	SPPL2B--PDPK1	2	0	SPPL2B	1161	chr19:2328774:+	PDPK1	25016	chr16:2607704:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	SPPL2B->Oncogene{Bushman},chr19:2328614-2355099:+,signal_peptide_peptidase_like_2B,PDPK1->3-phosphoinositide_dependent_protein_kinase_1,chr16:2587965-2653189:+	OVTOKO_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	RP11-973F15.1--RP11-96B2.1	1	2	RP11-973F15.1	1734	chr8:123705612:-	RP11-96B2.1	7930	chr8:123499705:-	ONLY_REF_SPLICE	YES	17	0	0.15	1	0.0101	0.0201	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	OVTOKO_OVARY	0.15	1	0.0302	TRUE	0	8	0	3	8	TRUE	ACH-000663
OVTOKO_OVARY	SYNRG--SLC22A20	1	1	SYNRG	14255	chr17:35928893:-	SLC22A20	51192	chr11:65009461:+	ONLY_REF_SPLICE	YES	7	7	0.22	0.22	0.0101	0.0101	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,SLC22A20->chr11:64981311-65010228:+,solute_carrier_family_22_member_20	OVTOKO_OVARY	0.22	0.22	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	TRAK2--ALS2	1	1	TRAK2	7103	chr2:202265741:-	ALS2	29399	chr2:202633668:-	ONLY_REF_SPLICE	YES	35	9	0.05	0.18	0.0101	0.0101	TRAK2->chr2:202241930-202316302:-,trafficking_protein,_kinesin_binding_2,ALS2->ALS2,_alsin_Rho_guanine_nucleotide_exchange_factor,chr2:202565277-202645912:-	OVTOKO_OVARY	0.05	0.18	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVCAR8_OVARY	WDR33--SAP130	65	36	WDR33	1176	chr2:128568586:-	SAP130	50001	chr2:128712918:-	ONLY_REF_SPLICE	YES	152	90	0.4	0.53	0.7153	0.3962	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	OVCAR8_OVARY	0.4	0.53	1.1115	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	CTD-2054N24.2--CTD-2054N24.1	66	16	CTD-2054N24.2	3394	chr15:100353291:+	CTD-2054N24.1	9372	chr15:100331758:+	INCL_NON_REF_SPLICE	YES	5	0	0.94	1	0.7264	0.1761	LOCAL_REARRANGEMENT:+:[14176],CTD-2054N24.2->chr15:100347228-100417353:+,CTD-2054N24.1->chr15:100331332-100333052:+	OVCAR8_OVARY	0.94	1	0.9025	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	FBXL7--TRIO	42	11	FBXL7	3619	chr5:15616181:+	TRIO	14917	chr5:14270934:+	ONLY_REF_SPLICE	YES	4	3	0.93	0.95	0.4622	0.1211	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},{Klijn_CCL:Ovary=1},FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+,TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor	OVCAR8_OVARY	0.93	0.95	0.5833	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	RASA2--SPINK5	37	7	RASA2	1170	chr3:141206058:+	SPINK5	37558	chr5:147465968:+	ONLY_REF_SPLICE	YES	9	0	0.83	1	0.4072	0.077	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,SPINK5->chr5:147405246-147516852:+,serine_peptidase_inhibitor,_Kazal_type_5	OVCAR8_OVARY	0.83	1	0.4842	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	WWC2--TENM3	31	20	WWC2	5601	chr4:184130178:+	TENM3	45049	chr4:183549804:+	ONLY_REF_SPLICE	YES	49	4	0.51	0.93	0.3412	0.2201	WWC2->WW_and_C2_domain_containing_2,chr4:184020446-184241930:+,TENM3->chr4:183065140-183724177:+,teneurin_transmembrane_protein_3	OVCAR8_OVARY	0.51	0.93	0.5613	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	FCHSD2--UVRAG	17	6	FCHSD2	10623	chr11:72695133:-	UVRAG	49941	chr11:75776754:+	ONLY_REF_SPLICE	YES	34	18	0.4	0.56	0.1871	0.066	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+	OVCAR8_OVARY	0.4	0.56	0.2531	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	FOXN3--RP11-944C7.1	15	8	FOXN3	1122	chr14:90085372:-	RP11-944C7.1	38664	chr14:90095480:-	ONLY_REF_SPLICE	YES	3	1	0.88	0.96	0.1651	0.088	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:-:[9772],FOXN3->chr14:89591215-90085493:-,forkhead_box_N3,RP11-944C7.1->chr14:90095265-90109015:-	OVCAR8_OVARY	0.88	0.96	0.2531	TRUE	0	2	0	1	2	TRUE	ACH-000696
OVCAR8_OVARY	RCC1--CTD-2354A18.1	11	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1211	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	OVCAR8_OVARY	1	1	0.1211	TRUE	0	1	0	7	0	TRUE	ACH-000696
OVCAR8_OVARY	CTD-2054N24.2--CTD-2054N24.1	8	10	CTD-2054N24.2	2280	chr15:100348507:+	CTD-2054N24.1	9372	chr15:100331758:+	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.088	0.1101	LOCAL_REARRANGEMENT:+:[14176],CTD-2054N24.2->chr15:100347228-100417353:+,CTD-2054N24.1->chr15:100331332-100333052:+	OVCAR8_OVARY	0.86	1	0.1981	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	WDR33--SAP130	1	36	WDR33	1439	chr2:128568323:-	SAP130	50001	chr2:128712918:-	ONLY_REF_SPLICE	NO	160	90	0.19	0.29	0.011	0.3962	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	OVCAR8_OVARY	0.19	0.29	0.4072	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	FOXN3--RP11-944C7.1	7	11	FOXN3	1122	chr14:90085372:-	RP11-944C7.1	37467	chr14:90097907:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.077	0.1211	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:-:[9772],FOXN3->chr14:89591215-90085493:-,forkhead_box_N3,RP11-944C7.1->chr14:90095265-90109015:-	OVCAR8_OVARY	0.86	1	0.1981	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	TANC2--KANK2	9	0	TANC2	18467	chr17:61396451:+	KANK2	58372	chr19:11287493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.099	0	HGNC_GENEFAM,TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,KANK2->KN_motif_and_ankyrin_repeat_domains_2,chr19:11274943-11308467:-	OVCAR8_OVARY	1	1	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	PLCB4--PLCB1	7	1	PLCB4	1444	chr20:9049853:+	PLCB1	51105	chr20:8608941:+	ONLY_REF_SPLICE	YES	98	1	0.08	0.89	0.077	0.011	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	OVCAR8_OVARY	0.08	0.89	0.088	TRUE	0	1	0	1	1	TRUE	ACH-000696
OVCAR8_OVARY	FAF1--EPS15	6	1	FAF1	1497	chr1:51425439:-	EPS15	31343	chr1:51946986:-	ONLY_REF_SPLICE	YES	42	15	0.14	0.32	0.066	0.011	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},{Klijn_CCL:Ovary=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15	OVCAR8_OVARY	0.14	0.32	0.077	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	SUMF1--BHLHE40-AS1	5	0	SUMF1	7757	chr3:4452549:-	BHLHE40-AS1	33957	chr3:4942382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.055	0	SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,BHLHE40-AS1->BHLHE40_antisense_RNA_1,chr3:4938493-5021646:-	OVCAR8_OVARY	1	1	0.055	TRUE	0	1	0	1	1	TRUE	ACH-000696
OVCAR8_OVARY	PLCB4--PLCB1	4	0	PLCB4	1141	chr20:9049550:+	PLCB1	51105	chr20:8608941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.044	0	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	OVCAR8_OVARY	1	1	0.044	TRUE	0	1	0	1	1	TRUE	ACH-000696
OVCAR8_OVARY	FOXN3--RP11-944C7.1	1	11	FOXN3	1122	chr14:90085372:-	RP11-944C7.1	36209	chr14:90099798:-	ONLY_REF_SPLICE	NO	3	0	0.8	1	0.011	0.1211	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:-:[9772],FOXN3->chr14:89591215-90085493:-,forkhead_box_N3,RP11-944C7.1->chr14:90095265-90109015:-	OVCAR8_OVARY	0.8	1	0.1321	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	FBXL7--TRIO	1	5	FBXL7	3619	chr5:15616181:+	TRIO	15992	chr5:14280431:+	ONLY_REF_SPLICE	NO	4	40	0.6	0.13	0.011	0.055	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},{Klijn_CCL:Ovary=1},FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+,TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor	OVCAR8_OVARY	0.13	0.6	0.066	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	DANCR--CTD-2354A18.1	2	0	DANCR	1530	chr4:53579126:+	CTD-2354A18.1	10186	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CTD-2354A18.1->chr18:70992176-71017113:+	OVCAR8_OVARY	1	1	0.022	TRUE	0	0	0	5	0	TRUE	ACH-000696
OVCAR8_OVARY	ERC2--ARHGEF3	2	0	ERC2	3976	chr3:56468379:-	ARHGEF3	54176	chr3:56789179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ERC2->ELKS/RAB6-interacting/CAST_family_member_2,Oncogene{Bushman},chr3:55542336-56502391:-,ARHGEF3->Rho_guanine_nucleotide_exchange_factor_3,chr3:56761446-57113357:-	OVCAR8_OVARY	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	SMURF2--PHB	2	0	SMURF2	1240	chr17:62657947:-	PHB	31620	chr17:47490653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,PHB->Oncogene{Bushman},chr17:47481414-47492246:-,prohibitin	OVCAR8_OVARY	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVK18_OVARY	CECR7--AC008132.1	129	4	CECR7	1775	chr22:17518234:+	AC008132.1	13601	chr22:18723545:+	ONLY_REF_SPLICE	YES	7	0	0.95	1	1.113	0.0345	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	OVK18_OVARY	0.95	1	1.1475	TRUE	0	0	0	5	0	TRUE	ACH-000947
OVK18_OVARY	CTD-2314B22.3--RP11-536C10.19	38	0	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3279	0	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	OVK18_OVARY	1	1	0.3279	TRUE	0	2	0	9	2	TRUE	ACH-000947
OVK18_OVARY	CECR7--AC008132.1	27	3	CECR7	1775	chr22:17518234:+	AC008132.1	15153	chr22:18727043:+	ONLY_REF_SPLICE	YES	7	0	0.81	1	0.233	0.0259	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	OVK18_OVARY	0.81	1	0.2589	TRUE	0	0	0	5	0	TRUE	ACH-000947
OVK18_OVARY	CECR7--AC008132.1	18	1	CECR7	1775	chr22:17518234:+	AC008132.1	16240	chr22:18732023:+	ONLY_REF_SPLICE	YES	7	11	0.73	0.63	0.1553	0.0086	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	OVK18_OVARY	0.63	0.73	0.1639	TRUE	0	0	0	5	0	TRUE	ACH-000947
OVK18_OVARY	AC027612.3--AP000345.1	12	1	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1035	0.0086	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	OVK18_OVARY	0.93	1	0.1121	TRUE	0	0	0	11	0	TRUE	ACH-000947
OVK18_OVARY	TMSB10--TMSB4X	7	0	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0604	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	OVK18_OVARY	1	1	0.0604	TRUE	0	1	0	17	1	TRUE	ACH-000947
OVK18_OVARY	CTD-2251F13.1--PRKD1	6	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0518	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	OVK18_OVARY	1	1	0.0518	TRUE	0	3	0	9	3	TRUE	ACH-000947
OVK18_OVARY	CTD-2251F13.1--PRKD1	5	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0.0086	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	OVK18_OVARY	1	1	0.0517	TRUE	0	3	0	8	3	TRUE	ACH-000947
OVK18_OVARY	RP11-81H14.2--RAP1B	5	0	RP11-81H14.2	2450	chr12:68835844:-	RAP1B	20164	chr12:69042479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0	RP11-81H14.2->chr12:68726668-68845443:-,RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+	OVK18_OVARY	1	1	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	AC027612.3--AP000345.1	4	1	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0.0086	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	OVK18_OVARY	1	1	0.0431	TRUE	0	0	0	11	0	TRUE	ACH-000947
OVK18_OVARY	TMSB10--TMSB4X	3	0	TMSB10	1785	chr2:85133533:+	TMSB4X	6738	chrX:12994917:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0259	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	OVK18_OVARY	1	1	0.0259	TRUE	0	1	0	17	1	TRUE	ACH-000947
OVK18_OVARY	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	OVK18_OVARY	1	1	0.0173	TRUE	0	1	0	7	1	TRUE	ACH-000947
OVK18_OVARY	DDX19B--TTC19	2	0	DDX19B	3938	chr16:70333257:+	TTC19	23272	chr17:15905229:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+,TTC19->chr17:15902694-15948329:+,tetratricopeptide_repeat_domain_19	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	EDARADD--ERO1LB	2	0	EDARADD	4069	chr1:236557805:+	ERO1LB	17630	chr1:236433294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	LOCAL_INVERSION:+:-:[66243],EDARADD->EDAR-associated_death_domain,chr1:236511562-236648214:+,ERO1LB->chr1:236378855-236445319:-	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	HERC4--HNRNPH3	2	0	HERC4	3466	chr10:69832640:-	HNRNPH3	47700	chr10:70098260:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-,HNRNPH3->chr10:70090931-70102948:+,heterogeneous_nuclear_ribonucleoprotein_H3	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	IP6K1--DAG1	2	0	IP6K1	4174	chr3:49785251:-	DAG1	22750	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,DAG1->chr3:49506146-49573048:+,dystroglycan_1	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	NFAT5--CYB5B	2	0	NFAT5	2281	chr16:69600277:+	CYB5B	35547	chr16:69481053:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	OVK18_OVARY	1	1	0.0173	TRUE	0	3	0	2	0	TRUE	ACH-000947
OVK18_OVARY	PHACTR4--RRAGB	2	0	PHACTR4	1223	chr1:28696336:+	RRAGB	36718	chrX:55782274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,RRAGB->Ras_related_GTP_binding_B,chrX:55744172-55785207:+	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	SND1--WDR53	2	0	SND1	15726	chr7:127361454:+	WDR53	41866	chr3:196294178:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,WDR53->WD_repeat_domain_53,chr3:196281056-196295545:-	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	SPPL2B--MEIS3	2	0	SPPL2B	3404	chr19:2334720:+	MEIS3	22177	chr19:47920607:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	SPPL2B->Oncogene{Bushman},chr19:2328614-2355099:+,signal_peptide_peptidase_like_2B,MEIS3->Meis_homeobox_3,chr19:47906381-47922780:-	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	SPRY4--PPP2R4	2	0	SPRY4	2611	chr5:141704409:-	PPP2R4	28630	chr9:131904724:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	SPRY4->chr5:141689992-141706020:-,sprouty_RTK_signaling_antagonist_4,PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	THRAP3--SFPQ	2	0	THRAP3	1090	chr1:36690106:+	SFPQ	33358	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	OVK18_OVARY	1	1	0.0173	TRUE	0	3	0	2	0	TRUE	ACH-000947
OVK18_OVARY	YAF2--USP15	2	0	YAF2	1751	chr12:42631401:-	USP15	24627	chr12:62687960:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	CECR7--AC008132.1	1	3	CECR7	1775	chr22:17518234:+	AC008132.1	14128	chr22:18724072:+	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0086	0.0259	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	OVK18_OVARY	0.36	1	0.0345	TRUE	0	0	0	5	0	TRUE	ACH-000947
OVK18_OVARY	EPB41L4A-AS1--PHF20	1	1	EPB41L4A-AS1	1770	chr5:111496992:+	PHF20	11220	chr20:34389413:+	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.0086	0.0086	EPB41L4A-AS1->EPB41L4A_antisense_RNA_1,chr5:111496223-111499973:+,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	OVK18_OVARY	0.04	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	IL4I1--PTOV1	1	1	IL4I1	2336	chr19:50430951:-	PTOV1	17171	chr19:50357663:+	ONLY_REF_SPLICE	YES	0	51	1	0.04	0.0086	0.0086	LOCAL_INVERSION:-:+:[28910],IL4I1->chr19:50392911-50432796:-,interleukin_4_induced_1,PTOV1->chr19:50353992-50364001:+,prostate_tumor_overexpressed_1	OVK18_OVARY	0.04	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	NAPG--C9orf91	1	1	NAPG	1254	chr18:10526155:+	C9orf91	19273	chr9:117379398:+	ONLY_REF_SPLICE	YES	38	1	0.05	0.67	0.0086	0.0086	NAPG->NSF_attachment_protein_gamma,chr18:10525902-10552758:+,C9orf91->chr9:117373486-117408702:+,chromosome_9_open_reading_frame_91	OVK18_OVARY	0.05	0.67	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	RP13-188A5.1--KLF8	1	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	9003	chrX:56291613:+	ONLY_REF_SPLICE	YES	2	1	0.5	0.67	0.0086	0.0086	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	OVK18_OVARY	0.5	0.67	0.0172	TRUE	1	9	1	5	7	TRUE	ACH-000947
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	237	234	PVT1	1202	chr8:128806980:+	ZCCHC7	36876	chr9:37302185:+	ONLY_REF_SPLICE	YES	13	37	0.97	0.93	2.6818	2.6479	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.97	5.3297	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	100	274	PVT1	2457	chr8:128808254:+	ZCCHC7	36876	chr9:37302185:+	ONLY_REF_SPLICE	YES	8	37	0.98	0.91	1.1316	3.1005	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.98	4.2321	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POU2F2--FRG1	128	46	POU2F2	6526	chr19:42626278:-	FRG1	30898	chr4:190878553:+	ONLY_REF_SPLICE	YES	44	70	0.8	0.71	1.4484	0.5205	POU2F2->Oncogene{Bushman},POU_class_2_homeobox_2,chr19:42590263-42700737:-,FRG1->FSHD_region_gene_1,chr4:190861943-190884359:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.8	1.9689	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	44	293	PVT1	2520	chr8:128808317:+	ZCCHC7	36876	chr9:37302185:+	ONLY_REF_SPLICE	YES	10	37	0.97	0.9	0.4979	3.3155	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.97	3.8134	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	2	212	PVT1	2520	chr8:128808317:+	ZCCHC7	37920	chr9:37304185:+	ONLY_REF_SPLICE	YES	10	62	0.96	0.78	0.0226	2.3989	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.96	2.4215	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	3	197	PVT1	2457	chr8:128808254:+	ZCCHC7	37920	chr9:37304185:+	ONLY_REF_SPLICE	YES	8	62	0.96	0.76	0.0339	2.2292	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.96	2.2631	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	10	166	PVT1	1202	chr8:128806980:+	ZCCHC7	37920	chr9:37304185:+	ONLY_REF_SPLICE	YES	13	62	0.93	0.74	0.1132	1.8784	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.93	1.9916	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ICMT--SZRD1	28	22	ICMT	4717	chr1:6291962:-	SZRD1	19135	chr1:16717870:+	ONLY_REF_SPLICE	YES	30	2	0.62	0.96	0.3168	0.2489	ICMT->chr1:6281253-6296032:-,isoprenylcysteine_carboxyl_methyltransferase,SZRD1->SUZ_RNA_binding_domain_containing_1,chr1:16679070-16724640:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.96	0.5657	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBWD6--FBXO10	28	10	CBWD6	14937	chr9:69240013:-	FBXO10	40581	chr9:37532055:-	ONLY_REF_SPLICE	YES	34	4	0.53	0.9	0.3168	0.1132	CBWD6->COBW_domain_containing_6,chr9:69204538-69269662:-,FBXO10->F-box_protein_10,chr9:37510889-37588871:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.9	0.43	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	3	94	PVT1	2457	chr8:128808254:+	ZCCHC7	39046	chr9:37305541:+	ONLY_REF_SPLICE	YES	8	212	0.92	0.31	0.0339	1.0637	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.92	1.0976	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	1	96	PVT1	2520	chr8:128808317:+	ZCCHC7	39046	chr9:37305541:+	ONLY_REF_SPLICE	NO	10	212	0.91	0.31	0.0113	1.0863	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.91	1.0976	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	2	76	PVT1	1202	chr8:128806980:+	ZCCHC7	39046	chr9:37305541:+	ONLY_REF_SPLICE	YES	13	212	0.86	0.27	0.0226	0.86	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.86	0.8826	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ICMT--SZRD1	10	17	ICMT	4717	chr1:6291962:-	SZRD1	20188	chr1:16719726:+	ONLY_REF_SPLICE	YES	30	21	0.47	0.56	0.1132	0.1924	ICMT->chr1:6281253-6296032:-,isoprenylcysteine_carboxyl_methyltransferase,SZRD1->SUZ_RNA_binding_domain_containing_1,chr1:16679070-16724640:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.56	0.3056	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUS1--RP11-667F9.2	14	0	NUS1	1584	chr6:117997248:+	RP11-667F9.2	12842	chr7:64928286:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1584	0	NUS1->NUS1_dehydrodolichyl_diphosphate_synthase_subunit,chr6:117996665-118031803:+,RP11-667F9.2->chr7:64927984-64928351:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1584	TRUE	0	1	0	2	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO10--CBWD7	9	1	FBXO10	6315	chr9:37537107:-	CBWD7	31842	chr9:42683890:+	ONLY_REF_SPLICE	YES	4	36	0.71	0.22	0.1018	0.0113	FBXO10->F-box_protein_10,chr9:37510889-37588871:-,CBWD7->COBW_domain_containing_7,chr9:42668608-42714962:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.71	0.1131	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	3	16	PVT1	2457	chr8:128808254:+	ZCCHC7	41982	chr9:37327796:+	ONLY_REF_SPLICE	YES	8	296	0.7	0.06	0.0339	0.1811	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.7	0.215	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ICMT--SZRD1	2	19	ICMT	4717	chr1:6291962:-	SZRD1	20185	chr1:16719723:+	ONLY_REF_SPLICE	YES	30	22	0.41	0.49	0.0226	0.215	ICMT->chr1:6281253-6296032:-,isoprenylcysteine_carboxyl_methyltransferase,SZRD1->SUZ_RNA_binding_domain_containing_1,chr1:16679070-16724640:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.49	0.2376	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ICMT--SZRD1	1	22	ICMT	4717	chr1:6291962:-	SZRD1	16570	chr1:16713550:+	ONLY_REF_SPLICE	YES	30	2	0.43	0.92	0.0113	0.2489	ICMT->chr1:6281253-6296032:-,isoprenylcysteine_carboxyl_methyltransferase,SZRD1->SUZ_RNA_binding_domain_containing_1,chr1:16679070-16724640:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.92	0.2602	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	2	12	PVT1	2457	chr8:128808254:+	ZCCHC7	43018	chr9:37349354:+	ONLY_REF_SPLICE	YES	8	288	0.64	0.05	0.0226	0.1358	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.64	0.1584	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POU2F2--FRG1	2	10	POU2F2	6526	chr19:42626278:-	FRG1	32003	chr4:190881903:+	ONLY_REF_SPLICE	YES	44	71	0.21	0.14	0.0226	0.1132	POU2F2->Oncogene{Bushman},POU_class_2_homeobox_2,chr19:42590263-42700737:-,FRG1->FSHD_region_gene_1,chr4:190861943-190884359:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.21	0.1358	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDKAL1--GOLGA8A	4	0	CDKAL1	12003	chr6:21000603:+	GOLGA8A	34056	chr15:34699936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0453	0	CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAF3IP1--ESPNL	3	1	TRAF3IP1	14554	chr2:239264721:+	ESPNL	29558	chr2:239036263:+	ONLY_REF_SPLICE	YES	1	8	0.8	0.33	0.0339	0.0113	TRAF3IP1->TRAF3_interacting_protein_1,chr2:239229082-239309541:+,ESPNL->chr2:239008798-239041928:+,espin-like	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.8	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AVL9--ABCC4	3	0	AVL9	1377	chr7:32535414:+	ABCC4	59518	chr13:95735544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	AVL9->AVL9_cell_migration_associated,chr7:32535038-33078516:+,ABCC4->ATP_binding_cassette_subfamily_C_member_4,chr13:95672083-95953687:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCP1--ATP6V1C1	3	0	LCP1	12931	chr13:46726976:-	ATP6V1C1	42766	chr8:104083072:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGGTB--CARS2	3	0	RABGGTB	2411	chr1:76253289:+	CARS2	37023	chr13:111296830:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	RABGGTB->Oncogene{Bushman},Rab_geranylgeranyltransferase_beta_subunit,chr1:76251879-76260764:+,CARS2->chr13:111293759-111365950:-,cysteinyl-tRNA_synthetase_2,_mitochondrial_(putative)	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-158H5.7--ZNF397	3	0	RP11-158H5.7	1118	chr18:32870048:-	ZNF397	11505	chr18:32823116:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_INVERSION:-:+:[13734],RP11-158H5.7->chr18:32860831-32870165:-,ZNF397->chr18:32820994-32847097:+,zinc_finger_protein_397	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-435B5.4--SNX29	3	0	RP11-435B5.4	2843	chr1:143465380:-	SNX29	41219	chr16:12371790:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	RP11-435B5.4->chr1:143354963-143467632:-,SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THAP2--C14orf132	3	0	THAP2	1767	chr12:72057555:+	C14orf132	23581	chr14:96559284:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	THAP2->THAP_domain_containing,_apoptosis_associated_protein_2,chr12:72056789-72074419:+,C14orf132->chr14:96505661-96560417:+,chromosome_14_open_reading_frame_132	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM28--DYNLL2	3	0	TRIM28	1429	chr19:59055886:+	DYNLL2	10551	chr17:56160932:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	TRIM28->chr19:59055458-59062089:+,tripartite_motif_containing_28,DYNLL2->chr17:56160776-56172897:+,dynein_light_chain_LC8-type_2	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGEF7--ADK	2	0	ARHGEF7	14026	chr13:111885640:+	ADK	50792	chr10:76285014:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,ADK->adenosine_kinase,chr10:75910960-76469061:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL11--RABGAP1L	2	0	ARL11	1317	chr13:50202751:+	RABGAP1L	33418	chr1:174668663:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ARL11->ADP_ribosylation_factor_like_GTPase_11,chr13:50202435-50208008:+,RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf37--ZBTB1	2	0	C14orf37	1185	chr14:58764673:-	ZBTB1	26243	chr14:64988205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,ZBTB1->chr14:64970430-65000408:+,zinc_finger_and_BTB_domain_containing_1	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC53--ZC2HC1B	2	0	CCDC53	10884	chr12:102419752:-	ZC2HC1B	19600	chr6:144205441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	CCDC53->chr12:102406705-102455927:-,coiled-coil_domain_containing_53,ZC2HC1B->chr6:144185573-144259483:+,zinc_finger_C2HC-type_containing_1B	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUX2--DNMT1	2	0	CUX2	26089	chr12:111779857:+	DNMT1	39486	chr19:10292753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	CUX2->chr12:111471828-111788358:+,cut_like_homeobox_2,DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DIDO1--RAC2	2	0	DIDO1	1157	chr20:61569148:-	RAC2	34929	chr22:37622843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,RAC2->Oncogene{Bushman},chr22:37621301-37640488:-,ras-related_C3_botulinum_toxin_substrate_2_(rho_family,_small_GTP_binding_protein_Rac2)	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EAF2--GSK3B	2	0	EAF2	4689	chr3:121563394:+	GSK3B	26258	chr3:119545702:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	EAF2->ELL_associated_factor_2,chr3:121554030-121605373:+,GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF3J--TRIP4	2	0	EIF3J	1371	chr15:44829625:+	TRIP4	26273	chr15:64737205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J,TRIP4->chr15:64679947-64747502:+,thyroid_hormone_receptor_interactor_4	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF5B--RMND5A	2	0	EIF5B	1237	chr2:99954052:+	RMND5A	30585	chr2:86979019:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	EIF5B->chr2:99953816-100017789:+,eukaryotic_translation_initiation_factor_5B,RMND5A->chr2:86947296-87005164:+,required_for_meiotic_nuclear_division_5_homolog_A	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMDS--FIP1L1	2	0	GMDS	10931	chr6:1930337:-	FIP1L1	38352	chr4:54319087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMDS--WDR43	2	0	GMDS	13147	chr6:1726650:-	WDR43	34635	chr2:29150435:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF2--GTF2I	2	0	ILF2	4235	chr1:153640031:-	GTF2I	41665	chr7:74163605:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ILF2->chr1:153634512-153643524:-,interleukin_enhancer_binding_factor_2,GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MKL1--RBX1	2	0	MKL1	3549	chr22:40948110:-	RBX1	28434	chr22:41363803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MS4A1--ISY1	2	0	MS4A1	1194	chr11:60223418:+	ISY1	17358	chr3:128877402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MS4A1->chr11:60223225-60238233:+,membrane_spanning_4-domains_A1,ISY1->ISY1_splicing_factor_homolog,chr3:128846258-128880136:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYL6--SUZ12P	2	0	MYL6	2462	chr12:56553406:+	SUZ12P	19323	chr17:29096019:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,SUZ12P->chr17:29036317-29117926:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO10--BASP1	2	0	MYO10	4048	chr5:16877718:-	BASP1	57021	chr5:17275317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},MYO10->chr5:16665395-16936372:-,myosin_X,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	1	0	0	2	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOP58--ANAPC5	2	0	NOP58	7795	chr2:203152447:+	ANAPC5	44529	chr12:121746494:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+,ANAPC5->anaphase_promoting_complex_subunit_5,chr12:121746048-121837699:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUPL2--BAX	2	0	NUPL2	1380	chr7:23221825:+	BAX	15264	chr19:49458805:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,BAX->BCL2_associated_X_protein,Oncogene{Bushman},chr19:49458072-49465055:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OSER1--NDUFA10	2	0	OSER1	1096	chr20:42839336:-	NDUFA10	28445	chr2:240900603:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1,NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLA2--PABPC4	2	0	POLA2	16555	chr11:65063461:+	PABPC4	31847	chr1:40030445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	POLA2->chr11:65029233-65073060:+,polymerase_(DNA)_alpha_2,_accessory_subunit,PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMA3--NUP93	2	0	PSMA3	1111	chr14:58711659:+	NUP93	26925	chr16:56852576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,NUP93->ArcherDX_panel,FoundationOne_panel,chr16:56764017-56878797:+,nucleoporin_93kDa	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--APBB1IP	2	0	RABGAP1L	13819	chr1:174247917:+	APBB1IP	67202	chr10:26849034:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,APBB1IP->amyloid_beta_precursor_protein_binding_family_B_member_1_interacting_protein,chr10:26727132-26856732:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABL6--CIC	2	0	RABL6	1405	chr9:139702778:+	CIC	32174	chr19:42790923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+,CIC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},capicua_transcriptional_repressor,chr19:42772689-42799949:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RARS--BAG1	2	0	RARS	3872	chr5:167919852:+	BAG1	25508	chr9:33259031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RARS->arginyl-tRNA_synthetase,chr5:167913450-167946304:+,BAG1->BCL2_associated_athanogene_1,Oncogene{Bushman},chr9:33247818-33264761:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL15--FCRL2	2	0	RPL15	1695	chr3:23958730:+	FCRL2	18313	chr1:157719467:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15,FCRL2->Fc_receptor_like_2,chr1:157715523-157746922:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3BGRL--BRWD3	2	0	SH3BGRL	1303	chrX:80457744:+	BRWD3	12699	chrX:80049271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},SH3BGRL->SH3_domain_binding_glutamate_rich_protein_like,chrX:80457442-80554046:+,BRWD3->Oncogene{Bushman},bromodomain_and_WD_repeat_domain_containing_3,chrX:79926353-80065187:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SHFM1--ACN9	2	0	SHFM1	7020	chr7:96324110:-	ACN9	29383	chr7:96810324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,ACN9->chr7:96745902-96811075:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	2	0	2	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD5--TMEM38B	2	0	SMAD5	1118	chr5:135468651:+	TMEM38B	26878	chr9:108467878:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	SMAD5->SMAD_family_member_5,chr5:135468534-135524435:+,TMEM38B->chr9:108456825-108538893:+,transmembrane_protein_38B	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ST6GAL1--EDEM1	2	0	ST6GAL1	4245	chr3:186666726:+	EDEM1	34104	chr3:5236894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ST6GAL1->Oncogene{Bushman},ST6_beta-galactoside_alpha-2,6-sialyltransferase_1,chr3:186648274-186796341:+,EDEM1->ER_degradation_enhancing_alpha-mannosidase_like_protein_1,chr3:5229331-5261642:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAF3--ATP5C1	2	0	TAF3	2615	chr10:7866523:+	ATP5C1	16733	chr10:7839010:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[10689],TAF3->TATA-box_binding_protein_associated_factor_3,chr10:7860467-8058590:+,ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	2	0	4	2	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP15--RAP1B	2	0	USP15	1166	chr12:62654284:+	RAP1B	42757	chr12:69042479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx&tcga_normals:1/3694=0.03%,USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRCC5--IKZF2	2	0	XRCC5	2602	chr2:216974180:+	IKZF2	38038	chr2:213921823:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZCCHC7--YIPF4	2	0	ZCCHC7	3765	chr9:37126939:+	YIPF4	23418	chr2:32515552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,YIPF4->Yip1_domain_family_member_4,chr2:32502979-32541663:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF66--SLC30A6	2	0	ZNF66	4542	chr19:20976684:+	SLC30A6	27136	chr2:32434562:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ZNF66->chr19:20959110-20991922:+,zinc_finger_protein_66,SLC30A6->chr2:32390933-32449448:+,solute_carrier_family_30_member_6	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBWD6--FBXO10	1	1	CBWD6	12745	chr9:69245076:-	FBXO10	41731	chr9:37529257:-	ONLY_REF_SPLICE	YES	29	10	0.06	0.17	0.0113	0.0113	CBWD6->COBW_domain_containing_6,chr9:69204538-69269662:-,FBXO10->F-box_protein_10,chr9:37510889-37588871:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.17	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBL1XR1--CHDH	1	1	TBL1XR1	1353	chr3:176914909:-	CHDH	35730	chr3:53875026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.0113	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,CHDH->choline_dehydrogenase,chr3:53846362-53880417:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	325	85	NPM1	4640	chr5:170818803:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	1381	1	0.23	1	3.313	0.8665	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	4.1795	TRUE	0	0	0	6	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFTUD2--IFIH1	153	53	EFTUD2	3961	chr17:42971785:-	IFIH1	50158	chr2:163124787:-	ONLY_REF_SPLICE	YES	192	12	0.52	0.94	1.5597	0.5403	EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.94	2.1	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED16--SBNO2	33	11	MED16	3843	chr19:890179:-	SBNO2	28080	chr19:1127766:-	INCL_NON_REF_SPLICE	YES	27	586	0.62	0.07	0.3364	0.1121	MED16->chr19:867962-893218:-,mediator_complex_subunit_16,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.62	0.4485	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXW11--RP11-387D10.2	21	2	FBXW11	1416	chr5:171433462:-	RP11-387D10.2	30323	chr15:91184489:-	ONLY_REF_SPLICE	YES	33	0	0.41	1	0.2141	0.0204	FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,RP11-387D10.2->chr15:91163239-91260372:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	0.2345	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXW11--RP11-387D10.2	16	4	FBXW11	3708	chr5:171423894:-	RP11-387D10.2	30323	chr15:91184489:-	ONLY_REF_SPLICE	YES	38	0	0.34	1	0.1631	0.0408	FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,RP11-387D10.2->chr15:91163239-91260372:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	1	0.2039	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VSIG10--TAOK3	8	3	VSIG10	2578	chr12:118564286:-	TAOK3	43222	chr12:118651915:-	ONLY_REF_SPLICE	YES	3	24	0.79	0.31	0.0816	0.0306	LOCAL_REARRANGEMENT:-:[13775],VSIG10->V-set_and_immunoglobulin_domain_containing_10,chr12:118501398-118573831:-,TAOK3->TAO_kinase_3,chr12:118587606-118810750:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.79	0.1122	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFTUD2--IFIH1	4	12	EFTUD2	3961	chr17:42971785:-	IFIH1	50274	chr2:163124671:-	INCL_NON_REF_SPLICE	YES	192	14	0.08	0.53	0.0408	0.1223	EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.53	0.1631	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENTPD5--RP11-662J14.1	4	1	ENTPD5	4093	chr14:74477794:-	RP11-662J14.1	32208	chr14:40855456:+	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.0408	0.0102	ENTPD5->chr14:74424713-74486102:-,ectonucleoside_triphosphate_diphosphohydrolase_5,RP11-662J14.1->chr14:40855456-40855998:+	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.051	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-563J2.2--PFKFB3	4	0	RP11-563J2.2	6748	chr10:6373565:+	PFKFB3	15223	chr10:6255586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[42155],RP11-563J2.2->chr10:6319650-6377944:+,PFKFB3->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_3,chr10:6186881-6277495:+	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFTUD2--IFIH1	2	5	EFTUD2	3961	chr17:42971785:-	IFIH1	50866	chr2:163124079:-	ONLY_REF_SPLICE	YES	192	29	0.04	0.19	0.0204	0.051	EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.19	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPN15--NOC4L	2	0	CAPN15	2366	chr16:583998:+	NOC4L	24151	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CAPN15->calpain_15,chr16:577717-604636:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	6	0	4	3	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPZA2--UBB	2	0	CAPZA2	3371	chr7:116502704:+	UBB	26491	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	5	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-440L14.1--CTBP1	2	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	2	0	7	2	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-563J2.2--PFKFB3	2	0	RP11-563J2.2	2218	chr10:6368605:+	PFKFB3	15223	chr10:6255586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:+:[42155],RP11-563J2.2->chr10:6319650-6377944:+,PFKFB3->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_3,chr10:6186881-6277495:+	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-563J2.2--PFKFB3	2	0	RP11-563J2.2	6451	chr10:6373268:+	PFKFB3	15223	chr10:6255586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:+:[42155],RP11-563J2.2->chr10:6319650-6377944:+,PFKFB3->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_3,chr10:6186881-6277495:+	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	1	1	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0102	0.0102	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.67	0.0204	TRUE	0	0	0	9	0	TRUE	ACH-000233
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--IL27RA	465	321	CDC37	6181	chr19:10505697:-	IL27RA	15925	chr19:14153265:+	ONLY_REF_SPLICE	YES	1821	33	0.3	0.96	5.1127	3.5294	{Klijn_CCL:Lymphoid=1},CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,IL27RA->chr19:14142560-14163743:+,interleukin_27_receptor_subunit_alpha	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.96	8.6421	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPC4AP--ACSBG2	249	282	TRPC4AP	9141	chr20:33622926:-	ACSBG2	40906	chr19:6190595:+	ONLY_REF_SPLICE	YES	398	1	0.57	1	2.7378	3.1006	{Klijn_CCL:Lymphoid=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,ACSBG2->acyl-CoA_synthetase_bubblegum_family_member_2,chr19:6135258-6193112:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	5.8384	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPC4AP--ACSBG2	249	182	TRPC4AP	9141	chr20:33622926:-	ACSBG2	42015	chr19:6192679:+	ONLY_REF_SPLICE	YES	398	20	0.52	0.96	2.7378	2.0011	{Klijn_CCL:Lymphoid=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,ACSBG2->acyl-CoA_synthetase_bubblegum_family_member_2,chr19:6135258-6193112:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.96	4.7389	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FREM1--MPDZ	80	52	FREM1	12959	chr9:14841445:-	MPDZ	74828	chr9:13162794:-	ONLY_REF_SPLICE	YES	688	0	0.16	1	0.8796	0.5717	FREM1->FRAS1_related_extracellular_matrix_1,chr9:14734664-14910993:-,MPDZ->chr9:13105703-13279589:-,multiple_PDZ_domain_crumbs_cell_polarity_complex_component	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	1.4513	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITCH--CATSPERD	59	43	ITCH	3377	chr20:32981687:+	CATSPERD	36429	chr19:5727279:+	ONLY_REF_SPLICE	YES	164	0	0.38	1	0.6487	0.4728	ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,CATSPERD->cation_channel_sperm_associated_auxiliary_subunit_delta,chr19:5720688-5778745:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	1.1215	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTI1--TRPC4AP	39	26	TTI1	11775	chr20:36624777:-	TRPC4AP	17667	chr20:33665977:-	ONLY_REF_SPLICE	YES	97	228	0.4	0.22	0.4288	0.2859	TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-,TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.4	0.7147	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALGAPB--AP1M2	20	15	RALGAPB	15862	chr20:37161502:+	AP1M2	44552	chr19:10694746:-	ONLY_REF_SPLICE	YES	106	3	0.25	0.92	0.2199	0.1649	RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.92	0.3848	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCAF16--ASH2L	10	0	DCAF16	7336	chr4:17802847:-	ASH2L	25758	chr8:37995169:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.11	0	DCAF16->DDB1_and_CUL4_associated_factor_16,chr4:17802278-17812381:-,ASH2L->ash2_(absent,_small,_or_homeotic)-like_(Drosophila),chr8:37962760-38001594:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASC4--EIF3J	8	4	CASC4	6085	chr15:44620985:+	EIF3J	25545	chr15:44829522:+	ONLY_REF_SPLICE	YES	56	197	0.18	0.06	0.088	0.044	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.18	0.132	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASC4--EIF3J	6	5	CASC4	7176	chr15:44624276:+	EIF3J	25545	chr15:44829522:+	ONLY_REF_SPLICE	YES	59	197	0.16	0.05	0.066	0.055	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.16	0.121	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTDC1--ZEB2	7	0	GTDC1	1130	chr2:145090006:-	ZEB2	54064	chr2:145187593:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.077	0	GTEx_FI:{Brain=[count:6=pct:0.9],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_REARRANGEMENT:-:[51513],GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.077	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALGAPB--AP1M2	2	15	RALGAPB	15862	chr20:37161502:+	AP1M2	43578	chr19:10695720:-	ONLY_REF_SPLICE	YES	106	2	0.14	0.89	0.022	0.1649	RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.89	0.1869	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OXR1--RSPO2	4	1	OXR1	1123	chr8:107282595:+	RSPO2	38990	chr8:109001472:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.044	0.011	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,RSPO2->Oncogene{Bushman},R-spondin_2,chr8:108911544-109095913:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R16B--RP5-1043L13.1	2	4	PPP1R16B	2439	chr20:37464818:+	RP5-1043L13.1	23363	chr20:58675226:+	ONLY_REF_SPLICE	YES	21	0	0.22	1	0.022	0.044	PPP1R16B->Oncogene{Bushman},chr20:37434348-37551667:+,protein_phosphatase_1_regulatory_subunit_16B,RP5-1043L13.1->chr20:58662895-59102516:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.066	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGPAT5--DCBLD1	2	0	AGPAT5	5462	chr8:6590171:+	DCBLD1	42973	chr6:117890783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	AGPAT5->1-acylglycerol-3-phosphate_O-acyltransferase_5,chr8:6565878-6617184:+,DCBLD1->chr6:117774980-117891021:+,discoidin,_CUB_and_LCCL_domain_containing_1	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000275.65--NDUFAF7	2	0	AP000275.65	2345	chr21:33982148:-	NDUFAF7	13288	chr2:37463239:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	AP000275.65->chr21:33951132-33984591:-,NDUFAF7->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_7,chr2:37458774-37480546:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CACNA1C-AS1--ANKLE2	2	0	CACNA1C-AS1	1394	chr12:2799973:-	ANKLE2	30668	chr12:133306856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	CACNA1C-AS1->CACNA1C_antisense_RNA_1,chr12:2785167-2800366:-,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--PTCD3	2	0	DANCR	1530	chr4:53579126:+	PTCD3	27586	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEA1--TMPO	2	0	EEA1	25711	chr12:93192668:-	TMPO	44219	chr12:98921664:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,TMPO->chr12:98909290-98944157:+,thymopoietin	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTPBP4--LARP4B	2	0	GTPBP4	1130	chr10:1034467:+	LARP4B	32244	chr10:889008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_INVERSION:+:-:[56774],GTPBP4->GTP_binding_protein_4,chr10:1034338-1065876:+,LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HS2ST1--BAZ1A	2	0	HS2ST1	8180	chr1:87558352:+	BAZ1A	26550	chr14:35331528:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPD1--EEF1B2	2	0	HSPD1	10974	chr2:198353726:-	EEF1B2	18849	chr2:207026762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1,EEF1B2->chr2:207024309-207027652:+,eukaryotic_translation_elongation_factor_1_beta_2	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTERFD1--MPHOSPH8	2	0	MTERFD1	1110	chr8:97273729:-	MPHOSPH8	27524	chr13:20245346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	MTERFD1->chr8:97251626-97273838:-,MPHOSPH8->M-phase_phosphoprotein_8,chr13:20207788-20247599:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFV3--U2AF1	2	0	NDUFV3	5809	chr21:44317157:+	U2AF1	26761	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	5	0	8	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIK3C2A--COG4	2	0	PIK3C2A	23220	chr11:17135908:-	COG4	45398	chr16:70551643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,COG4->chr16:70514471-70557468:-,component_of_oligomeric_golgi_complex_4	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PMS2P10--WRN	2	0	PMS2P10	3697	chr7:74925018:-	WRN	34437	chr8:30998946:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PMS2P10->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_10,chr7:74916804-74928928:-,WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--EZH2	2	0	PROSC	2996	chr8:37623873:+	EZH2	26579	chr7:148512638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-299J3.8--MTMR2	2	0	RP11-299J3.8	1044	chr3:122135097:+	MTMR2	28926	chr11:95574873:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RP11-299J3.8->chr3:122135054-122162027:+,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS9--SNRNP70	2	0	RPS9	1868	chr19:54705477:+	SNRNP70	22008	chr19:49610882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RPS9->chr19:54704610-54752862:+,ribosomal_protein_S9,SNRNP70->chr19:49588676-49611862:+,small_nuclear_ribonucleoprotein_U1_subunit_70	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLBP--WHSC1	2	0	SLBP	2787	chr4:1705323:-	WHSC1	17685	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SLBP->chr4:1694527-1714282:-,stem-loop_binding_protein,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STUB1--RPL13A	2	0	STUB1	2380	chr16:731603:+	RPL13A	8668	chr19:49994036:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	STUB1->STIP1_homology_and_U-box_containing_protein_1,chr16:730224-732870:+,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTI1--TRPC4AP	2	0	TTI1	10196	chr20:36627590:-	TRPC4AP	24364	chr20:33623111:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-,TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALGAPB--AP1M2	1	3	RALGAPB	15862	chr20:37161502:+	AP1M2	46063	chr19:10692554:-	ONLY_REF_SPLICE	YES	106	18	0.04	0.18	0.011	0.033	RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.18	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000005
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	996	559	CIITA	4805	chr16:10992589:+	C15orf65	32427	chr15:55710421:+	ONLY_REF_SPLICE	YES	101	4	0.94	1	14.4905	8.1327	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	22.6232	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	554	663	CIITA	4805	chr16:10992589:+	C15orf65	31902	chr15:55709896:+	ONLY_REF_SPLICE	YES	101	2	0.92	1	8.06	9.6458	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	17.7058	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRPD3--ADORA2A	154	99	SNRPD3	2713	chr22:24953768:+	ADORA2A	21557	chr22:24829099:+	ONLY_REF_SPLICE	YES	994	17	0.2	0.94	2.2405	1.4403	SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,ADORA2A->adenosine_A2a_receptor,chr22:24813847-24838328:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.94	3.6808	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-113P19.1	169	7	G3BP1	1992	chr5:151151597:+	CTB-113P19.1	32398	chr5:151104126:+	ONLY_REF_SPLICE	YES	2	0	0.99	1	2.4587	0.1018	LOCAL_REARRANGEMENT:+:[46263],G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-113P19.1->chr5:151056506-151104343:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.5605	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2B--MGMT	133	6	PRRC2B	1171	chr9:134269650:+	MGMT	42583	chr10:131334505:+	ONLY_REF_SPLICE	YES	4	0	0.97	1	1.935	0.0873	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,MGMT->O-6-methylguanine-DNA_methyltransferase,chr10:131265448-131566271:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	2.0223	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	31	373	CIITA	3742	chr16:10989621:+	C15orf65	32427	chr15:55710421:+	ONLY_REF_SPLICE	YES	123	4	0.77	0.99	0.451	5.4267	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.99	5.8777	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	8	443	CIITA	3742	chr16:10989621:+	C15orf65	31902	chr15:55709896:+	ONLY_REF_SPLICE	YES	123	2	0.79	1	0.1164	6.4451	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	6.5615	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	67	204	CIITA	3406	chr16:10989285:+	C15orf65	32427	chr15:55710421:+	ONLY_REF_SPLICE	YES	453	4	0.37	0.99	0.9748	2.9679	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.99	3.9427	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IARS--ECM2	99	65	IARS	13568	chr9:95030456:-	ECM2	39863	chr9:95285175:-	ONLY_REF_SPLICE	YES	448	0	0.27	1	1.4403	0.9457	IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,ECM2->chr9:95256365-95298937:-,extracellular_matrix_protein_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	2.386	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GSE1--CFDP1	101	13	GSE1	2365	chr16:85647004:+	CFDP1	39558	chr16:75339080:-	ONLY_REF_SPLICE	YES	14	111	0.89	0.51	1.4694	0.1891	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.89	1.6585	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-574K11.29	91	3	TIMM23	6952	chr10:51606988:-	RP11-574K11.29	13578	chr10:75473090:-	INCL_NON_REF_SPLICE	YES	135	8	0.41	0.92	1.3239	0.0436	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.29->chr10:75463493-75473339:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.92	1.3675	TRUE	1	1	0	6	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRPD3--ADORA2A	80	37	SNRPD3	2713	chr22:24953768:+	ADORA2A	23163	chr22:24836551:+	ONLY_REF_SPLICE	YES	994	332	0.11	0.26	1.1639	0.5383	SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,ADORA2A->adenosine_A2a_receptor,chr22:24813847-24838328:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.26	1.7022	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFAT5--CYB5B	65	55	NFAT5	3335	chr16:69602451:+	CYB5B	39636	chr16:69492996:+	ONLY_REF_SPLICE	YES	29	564	0.81	0.18	0.9457	0.8002	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.81	1.7459	TRUE	0	1	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GSE1--CFDP1	65	45	GSE1	3584	chr16:85667738:+	CFDP1	39558	chr16:75339080:-	ONLY_REF_SPLICE	YES	81	111	0.58	0.5	0.9457	0.6547	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.58	1.6004	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DBT--RP5-837M10.1	69	0	DBT	1065	chr1:100715326:-	RP5-837M10.1	24701	chr1:100797918:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0039	0	LOCAL_REARRANGEMENT:-:[81970],DBT->chr1:100652475-100715390:-,dihydrolipoamide_branched_chain_transacylase_E2,RP5-837M10.1->chr1:100797360-100798173:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0039	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	4	246	CIITA	3406	chr16:10989285:+	C15orf65	31902	chr15:55709896:+	ONLY_REF_SPLICE	YES	453	2	0.36	0.99	0.0582	3.579	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.99	3.6372	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WASH5P--VPS18	55	34	WASH5P	3129	chr19:66346:-	VPS18	18300	chr15:41194814:+	ONLY_REF_SPLICE	YES	7	38	0.93	0.7	0.8002	0.4947	WASH5P->WAS_protein_family_homolog_5_pseudogene,chr19:60105-71626:-,VPS18->VPS18,_CORVET/HOPS_core_subunit,chr15:41186628-41196173:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.93	1.2949	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRPD3--SPECC1L	46	32	SNRPD3	2713	chr22:24953768:+	SPECC1L	32776	chr22:24807556:+	ONLY_REF_SPLICE	YES	994	57	0.07	0.58	0.6692	0.4656	SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.58	1.1348	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1432--PDCD1LG2	48	20	KIAA1432	1429	chr9:5629453:+	PDCD1LG2	34935	chr9:5522533:+	ONLY_REF_SPLICE	YES	23	1	0.75	0.99	0.6983	0.291	LOCAL_REARRANGEMENT:+:[57743],KIAA1432->chr9:5629025-5776557:+,PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.99	0.9893	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYNLT3--CYBB	47	22	DYNLT3	5812	chrX:37698668:-	CYBB	25678	chrX:37670464:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6838	0.3201	LOCAL_INVERSION:-:+:[23296],DYNLT3->chrX:37696010-37706890:-,dynein_light_chain_Tctex-type_3,CYBB->chrX:37639264-37672714:+,cytochrome_b-245,_beta_polypeptide	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0039	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WASH5P--VPS18	35	54	WASH5P	3129	chr19:66346:-	VPS18	16931	chr15:41192844:+	INCL_NON_REF_SPLICE	YES	7	21	0.93	0.81	0.5092	0.7856	WASH5P->WAS_protein_family_homolog_5_pseudogene,chr19:60105-71626:-,VPS18->VPS18,_CORVET/HOPS_core_subunit,chr15:41186628-41196173:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.93	1.2948	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPTLC1--IARS	43	20	SPTLC1	14561	chr9:94808281:-	IARS	22723	chr9:95051708:-	ONLY_REF_SPLICE	YES	70	132	0.47	0.32	0.6256	0.291	LOCAL_REARRANGEMENT:-:[94823],SPTLC1->chr9:94794281-94877666:-,serine_palmitoyltransferase_long_chain_base_subunit_1,IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.47	0.9166	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	32	44	FAM222B	5825	chr17:27117396:-	FLOT2	21189	chr17:27211333:-	ONLY_REF_SPLICE	YES	4	171	0.95	0.31	0.4656	0.6401	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.95	1.1057	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFF1--SBNO2	37	16	AFF1	3385	chr4:87869723:+	SBNO2	38710	chr19:1154401:-	ONLY_REF_SPLICE	YES	12	16	0.82	0.77	0.5383	0.2328	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.82	0.7711	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFAT5--CYB5B	25	43	NFAT5	2281	chr16:69600277:+	CYB5B	39636	chr16:69492996:+	ONLY_REF_SPLICE	YES	31	564	0.69	0.11	0.3637	0.6256	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.69	0.9893	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	21	31	FAM222B	4726	chr17:27139227:-	FLOT2	21189	chr17:27211333:-	ONLY_REF_SPLICE	YES	5	171	0.91	0.23	0.3055	0.451	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.91	0.7565	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PACS1--TSGA10IP	27	6	PACS1	1480	chr11:65838313:+	TSGA10IP	36159	chr11:65726354:+	ONLY_REF_SPLICE	YES	32	0	0.51	1	0.3928	0.0873	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,TSGA10IP->chr11:65712916-65727434:+,testis_specific_10_interacting_protein	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	1	0.4801	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC1--ADAM12	26	2	HERC1	52875	chr15:63950743:-	ADAM12	89984	chr10:127967557:-	ONLY_REF_SPLICE	YES	53	0	0.35	1	0.3783	0.0291	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,ADAM12->ADAM_metallopeptidase_domain_12,Oncogene{Bushman},chr10:127700950-128077024:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	0.4074	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNRF1--GPT2	21	14	ZNRF1	2066	chr16:75033993:+	GPT2	23806	chr16:46940754:+	ONLY_REF_SPLICE	YES	75	44	0.32	0.44	0.3055	0.2037	ZNRF1->chr16:75032928-75144892:+,zinc_and_ring_finger_1,_E3_ubiquitin_protein_ligase,GPT2->chr16:46918290-46965209:+,glutamic_pyruvate_transaminase_(alanine_aminotransferase)_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.44	0.5092	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TP53BP1--PPIP5K1	22	3	TP53BP1	14389	chr15:43748015:-	PPIP5K1	61786	chr15:43825824:-	INCL_NON_REF_SPLICE	NO	47	3	0.35	0.89	0.3201	0.0436	LOCAL_REARRANGEMENT:-:[22734],TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1,PPIP5K1->chr15:43825660-43882430:-,diphosphoinositol_pentakisphosphate_kinase_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.89	0.3637	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--STX18-AS1	20	8	FAM208B	1338	chr10:5727138:+	STX18-AS1	41145	chr4:4650704:+	ONLY_REF_SPLICE	YES	11	3	0.72	0.9	0.291	0.1164	FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.9	0.4074	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	1	80	CIITA	1185	chr16:10971239:+	C15orf65	32427	chr15:55710421:+	ONLY_REF_SPLICE	YES	808	4	0.09	0.95	0.0145	1.1639	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.95	1.1784	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRPF6--TPD52L2	19	8	PRPF6	19235	chr20:62660844:+	TPD52L2	26707	chr20:62505021:+	ONLY_REF_SPLICE	YES	166	237	0.14	0.1	0.2764	0.1164	LOCAL_REARRANGEMENT:+:[89590],PRPF6->chr20:62612488-62664453:+,pre-mRNA_processing_factor_6,TPD52L2->chr20:62496596-62522898:+,tumor_protein_D52_like_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.14	0.3928	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	18	11	FAM222B	3499	chr17:27161311:-	FLOT2	21189	chr17:27211333:-	ONLY_REF_SPLICE	YES	0	171	1	0.14	0.2619	0.16	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.4219	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	17	7	FAM222B	2441	chr17:27169700:-	FLOT2	21189	chr17:27211333:-	ONLY_REF_SPLICE	YES	0	171	1	0.12	0.2473	0.1018	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.3491	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PARL--ABCC5	17	7	PARL	8509	chr3:183558358:-	ABCC5	48312	chr3:183645231:-	ONLY_REF_SPLICE	YES	177	41	0.12	0.37	0.2473	0.1018	LOCAL_REARRANGEMENT:-:[35001],PARL->chr3:183547173-183602721:-,presenilin_associated_rhomboid_like,ABCC5->ATP_binding_cassette_subfamily_C_member_5,chr3:183637722-183735803:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.37	0.3491	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFAT5--CYB5B	8	41	NFAT5	3335	chr16:69602451:+	CYB5B	41116	chr16:69496333:+	ONLY_REF_SPLICE	YES	29	579	0.63	0.08	0.1164	0.5965	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.63	0.7129	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKBKB--DKK4	16	8	IKBKB	6556	chr8:42162793:+	DKK4	27826	chr8:42234690:-	INCL_NON_REF_SPLICE	YES	48	0	0.33	1	0.2328	0.1164	LOCAL_INVERSION:+:-:[41613],IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta,DKK4->chr8:42231586-42234750:-,dickkopf_WNT_signaling_pathway_inhibitor_4	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.3492	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LMAN2--FAM193B	17	4	LMAN2	5644	chr5:176761285:-	FAM193B	16122	chr5:176965108:-	ONLY_REF_SPLICE	YES	342	52	0.06	0.29	0.2473	0.0582	LMAN2->chr5:176758563-176778853:-,lectin,_mannose_binding_2,FAM193B->chr5:176946789-176981542:-,family_with_sequence_similarity_193_member_B	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.29	0.3055	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCKAP1L--RP11-753H16.5	15	5	NCKAP1L	20503	chr12:54925609:+	RP11-753H16.5	33738	chr12:54860625:+	ONLY_REF_SPLICE	YES	102	0	0.16	1	0.2182	0.0727	LOCAL_REARRANGEMENT:+:[30726],NCKAP1L->NCK_associated_protein_1_like,chr12:54891495-54937726:+,RP11-753H16.5->chr12:54747576-54860769:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.2909	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTCH2--AGBL2	14	8	MTCH2	2598	chr11:47660251:-	AGBL2	17898	chr11:47735899:-	ONLY_REF_SPLICE	YES	173	6	0.11	0.79	0.2037	0.1164	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[16968],MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2,AGBL2->ATP/GTP_binding_protein-like_2,chr11:47681143-47736941:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.79	0.3201	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THADA--MBOAT2	14	7	THADA	15803	chr2:43793837:-	MBOAT2	67358	chr2:9028203:-	ONLY_REF_SPLICE	YES	22	59	0.49	0.26	0.2037	0.1018	THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-,MBOAT2->chr2:8992820-9143942:-,membrane_bound_O-acyltransferase_domain_containing_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.49	0.3055	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC41A3--PVRL3-AS1	15	0	SLC41A3	7256	chr3:125786790:-	PVRL3-AS1	32481	chr3:110612677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2182	0	SLC41A3->chr3:125725198-125820404:-,solute_carrier_family_41_member_3,PVRL3-AS1->PVRL3_antisense_RNA_1,chr3:110612555-110790400:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-113P19.1	13	6	G3BP1	1988	chr5:151151593:+	CTB-113P19.1	32398	chr5:151104126:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1891	0.0873	LOCAL_REARRANGEMENT:+:[46263],G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-113P19.1->chr5:151056506-151104343:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2764	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BBS12--IL21-AS1	11	5	BBS12	1183	chr4:123654039:+	IL21-AS1	10418	chr4:123541123:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.16	0.0727	LOCAL_REARRANGEMENT:+:[43546],BBS12->Bardet-Biedl_syndrome_12,chr4:123653857-123666098:+,IL21-AS1->IL21_antisense_RNA_1,chr4:123540138-123610311:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2327	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDB1--FBXL13	10	5	DDB1	14205	chr11:61089067:-	FBXL13	47783	chr7:102553662:-	ONLY_REF_SPLICE	YES	333	0	0.04	1	0.1455	0.0727	DDB1->chr11:61066923-61110068:-,damage_specific_DNA_binding_protein_1,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCP11L1--ASCC3	10	5	TCP11L1	8904	chr11:33080641:+	ASCC3	64693	chr6:100964203:-	ONLY_REF_SPLICE	YES	25	23	0.38	0.39	0.1455	0.0727	TCP11L1->chr11:33060963-33127489:+,t-complex_11_like_1,ASCC3->activating_signal_cointegrator_1_complex_subunit_3,chr6:100956070-101329248:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.39	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	2	32	FAM222B	4777	chr17:27139176:-	FLOT2	21189	chr17:27211333:-	ONLY_REF_SPLICE	NO	5	171	0.87	0.17	0.0291	0.4656	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.87	0.4947	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--VAT1L	9	1	WWOX	3910	chr16:78143732:+	VAT1L	34273	chr16:77850818:+	ONLY_REF_SPLICE	YES	75	21	0.12	0.32	0.1309	0.0145	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.32	0.1454	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DBF4--RUNDC3B	7	8	DBF4	10304	chr7:87530193:+	RUNDC3B	26213	chr7:87369107:+	ONLY_REF_SPLICE	YES	74	0	0.17	1	0.1018	0.1164	LOCAL_REARRANGEMENT:+:[43920],DBF4->DBF4_zinc_finger,chr7:87505531-87538856:+,RUNDC3B->RUN_domain_containing_3B,chr7:87256864-87461611:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2L13--CECR2	7	7	BCL2L13	4107	chr22:18138598:+	CECR2	25472	chr22:17976435:+	ONLY_REF_SPLICE	YES	55	1	0.2	0.93	0.1018	0.1018	LOCAL_REARRANGEMENT:+:[73771],BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,CECR2->cat_eye_syndrome_chromosome_region,_candidate_2,chr22:17840837-18037850:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.93	0.2036	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LANCL3--DYNLT3	7	3	LANCL3	1875	chrX:37431696:+	DYNLT3	25568	chrX:37696612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1018	0.0436	LANCL3->LanC_like_3,chrX:37430822-37543716:+,DYNLT3->chrX:37696010-37706890:-,dynein_light_chain_Tctex-type_3	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1454	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UTRN--GRM1	7	3	UTRN	49672	chr6:144864006:+	GRM1	94358	chr6:146480484:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1018	0.0436	UTRN->chr6:144606837-145174170:+,utrophin,GRM1->chr6:146348782-146758734:+,glutamate_metabotropic_receptor_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1454	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--VAT1L	6	7	WWOX	6262	chr16:78149051:+	VAT1L	34273	chr16:77850818:+	ONLY_REF_SPLICE	YES	45	21	0.22	0.38	0.0873	0.1018	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.38	0.1891	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	6	3	FAM222B	2441	chr17:27169700:-	FLOT2	22273	chr17:27210249:-	ONLY_REF_SPLICE	YES	0	185	1	0.05	0.0873	0.0436	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.1309	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC16--ZNF212	6	2	CDC16	13459	chr13:115024873:+	ZNF212	23563	chr7:148947250:+	ONLY_REF_SPLICE	YES	32	25	0.2	0.24	0.0873	0.0291	CDC16->cell_division_cycle_16,chr13:115000362-115038198:+,ZNF212->chr7:148936742-148952700:+,zinc_finger_protein_212	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.24	0.1164	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2B--MGMT	5	4	PRRC2B	1171	chr9:134269650:+	MGMT	47177	chr10:131506159:+	ONLY_REF_SPLICE	YES	4	40	0.69	0.18	0.0727	0.0582	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,MGMT->O-6-methylguanine-DNA_methyltransferase,chr10:131265448-131566271:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.69	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP112--APOH	5	3	CEP112	6307	chr17:64171162:-	APOH	45994	chr17:64225540:-	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.0727	0.0436	LOCAL_REARRANGEMENT:-:[19949],CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,APOH->apolipoprotein_H,chr17:64208151-64252643:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	3	11	FAM222B	4726	chr17:27139227:-	FLOT2	22273	chr17:27210249:-	ONLY_REF_SPLICE	YES	5	185	0.74	0.07	0.0436	0.16	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.74	0.2036	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	2	14	FAM222B	5825	chr17:27117396:-	FLOT2	22273	chr17:27210249:-	ONLY_REF_SPLICE	YES	4	185	0.8	0.08	0.0291	0.2037	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.8	0.2328	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1432--PDCD1LG2	2	13	KIAA1432	1429	chr9:5629453:+	PDCD1LG2	36004	chr9:5534745:+	ONLY_REF_SPLICE	YES	23	5	0.39	0.75	0.0291	0.1891	LOCAL_REARRANGEMENT:+:[57743],KIAA1432->chr9:5629025-5776557:+,PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.75	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544M6.1--LINC00923	5	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	11441	chr15:98286713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0727	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0727	TRUE	0	1	0	2	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PACS1--TSGA10IP	4	4	PACS1	1480	chr11:65838313:+	TSGA10IP	36466	chr11:65726661:+	ONLY_REF_SPLICE	YES	32	2	0.2	0.8	0.0582	0.0582	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,TSGA10IP->chr11:65712916-65727434:+,testis_specific_10_interacting_protein	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.8	0.1164	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	3	5	FAM222B	3499	chr17:27161311:-	FLOT2	22273	chr17:27210249:-	ONLY_REF_SPLICE	YES	0	185	1	0.04	0.0436	0.0727	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.1163	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GSE1--CFDP1	4	1	GSE1	1123	chr16:85645137:+	CFDP1	39558	chr16:75339080:-	ONLY_REF_SPLICE	YES	1	111	0.83	0.04	0.0582	0.0145	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.83	0.0727	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZBTB20--LSAMP	4	1	ZBTB20	6598	chr3:114693213:-	LSAMP	53449	chr3:115571464:-	ONLY_REF_SPLICE	YES	0	24	1	0.17	0.0582	0.0145	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0727	TRUE	0	0	0	2	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-113P19.1	2	7	G3BP1	1992	chr5:151151597:+	CTB-113P19.1	29869	chr5:151065943:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0291	0.1018	LOCAL_REARRANGEMENT:+:[46263],G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-113P19.1->chr5:151056506-151104343:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	2	6	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	8	0.8	0.5	0.0291	0.0873	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.8	0.1164	TRUE	0	0	0	13	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MKLN1-AS1--HERC1	2	5	MKLN1-AS1	13605	chr7:130630479:-	HERC1	22354	chr15:64067848:-	ONLY_REF_SPLICE	YES	10	10	0.41	0.41	0.0291	0.0727	MKLN1-AS1->chr7:130626519-130794935:-,HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.41	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR29B1--HERC1	2	1	MIR29B1	2201	chr7:130596869:-	HERC1	16582	chr15:64067848:-	ONLY_REF_SPLICE	YES	0	10	1	0.23	0.0291	0.0145	MIR29B1->chr7:130561495-130598069:-,microRNA_29b-1,HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MKLN1-AS1--HERC1	1	5	MKLN1-AS1	13605	chr7:130630479:-	HERC1	20384	chr15:64072751:-	ONLY_REF_SPLICE	YES	10	10	0.38	0.38	0.0145	0.0727	MKLN1-AS1->chr7:130626519-130794935:-,HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.38	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRMT10--NR3C2	2	0	PRMT10	8180	chr4:148581997:-	NR3C2	31323	chr4:149041439:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	PRMT10->chr4:148558936-148605381:-,NR3C2->Oncogene{Bushman},chr4:148999913-149365850:-,nuclear_receptor_subfamily_3_group_C_member_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--DAZL	2	0	RFTN1	3399	chr3:16535232:-	DAZL	29050	chr3:16640105:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],LOCAL_REARRANGEMENT:-:[72766],RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	0	1	0	2	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2L13--CECR2	1	3	BCL2L13	2936	chr22:18121652:+	CECR2	25472	chr22:17976435:+	ONLY_REF_SPLICE	YES	21	1	0.16	0.8	0.0145	0.0436	LOCAL_REARRANGEMENT:+:[73771],BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,CECR2->cat_eye_syndrome_chromosome_region,_candidate_2,chr22:17840837-18037850:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.8	0.0581	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC007392.3--AC007403.2	1	1	AC007392.3	8704	chr2:66924635:+	AC007403.2	19569	chr2:67172420:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0145	0.0145	GTEx_FI:{Colon=[count:4=pct:2.1],Prostate=[count:3=pct:4.9],Brain=[count:3=pct:0.5],Uterus=[count:2=pct:4.7],Esophagus=[count:2=pct:0.5],Bladder=[count:1=pct:11.1]},AC007392.3->chr2:66801162-66957289:+,AC007403.2->chr2:67131568-67198594:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.029	TRUE	1	4	0	3	4	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444A22.1--AC007131.2	1	1	RP11-444A22.1	2236	chr2:60054281:-	AC007131.2	8658	chr2:59946792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0145	0.0145	GTEx_FI:{Testis=[count:11=pct:10.5]},RP11-444A22.1->chr2:59445815-60327335:-,AC007131.2->chr2:59465851-59960531:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	TRUE	0	0	1	2	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--RP11-326I19.3	1	1	STX18-AS1	8019	chr4:4651269:+	RP11-326I19.3	20475	chr4:4852434:+	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0145	0.0145	STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,RP11-326I19.3->chr4:4846164-4852554:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000815
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL13A--POU2AF1	13	0	RPL13A	2756	chr19:49993771:+	POU2AF1	27682	chr11:111224705:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.108	0	RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a,POU2AF1->Oncogene{Bushman},POU_class_2_associating_factor_1,chr11:111222977-111326355:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.108	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF236--FNTB	6	0	ZNF236	33191	chr18:74659608:+	FNTB	53660	chr14:65494171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	ZNF236->chr18:74534563-74682683:+,zinc_finger_protein_236,FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2E--RINT1	4	2	KMT2E	1357	chr7:104654982:+	RINT1	34520	chr7:105173271:+	ONLY_REF_SPLICE	YES	12	13	0.33	0.32	0.0332	0.0166	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,RINT1->RAD50_interactor_1,chr7:105172532-105208124:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.33	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPA5--HDGF	4	0	HSPA5	1154	chr9:128003456:-	HDGF	19648	chr1:156712734:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0	HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5,HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYBL2--CNOT1	4	0	MYBL2	9189	chr20:42331259:+	CNOT1	22938	chr16:58633258:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0	MYBL2->MYB_proto-oncogene_like_2,Oncogene{Bushman},chr20:42295754-42345136:+,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO18A--CCDC93	4	0	MYO18A	16116	chr17:27445401:-	CCDC93	75252	chr2:118674261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0	MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA,CCDC93->chr2:118673054-118771709:-,coiled-coil_domain_containing_93	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALA--ELMO1	4	0	RALA	1343	chr7:39663424:+	ELMO1	22760	chr7:37311487:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	RALA->Oncogene{Bushman},chr7:39663082-39747723:+,v-ral_simian_leukemia_viral_oncogene_homolog_A_(ras_related),ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRCAP--IGH@	4	0	SRCAP	26539	chr16:30749844:+	IGH@	130806	chr14:106321279:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0	SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+,IGH@->Oncogene{Bushman}	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WIZ--ERAL1	4	0	WIZ	14206	chr19:15538041:-	ERAL1	26209	chr17:27185702:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0	WIZ->chr19:15532319-15560762:-,widely_interspaced_zinc_finger_motifs,ERAL1->Era_like_12S_mitochondrial_rRNA_chaperone_1,chr17:27181956-27188085:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLII--KIAA1737	3	1	FLII	10257	chr17:18152114:-	KIAA1737	25943	chr14:77582980:+	INCL_NON_REF_SPLICE	YES	19	20	0.17	0.17	0.0249	0.0083	FLII->Oncogene{Bushman},chr17:18148150-18162230:-,flightless_I_actin_binding_protein,KIAA1737->chr14:77564440-77583630:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.17	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HUWE1--XAGE1E	3	1	HUWE1	7413	chrX:53674311:-	XAGE1E	81364	chrX:52544549:-	ONLY_REF_SPLICE	YES	8	3	0.33	0.57	0.0249	0.0083	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1E->X_antigen_family_member_1E,chrX:52541053-52546197:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.57	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADAR--BAZ1B	3	0	ADAR	7577	chr1:154570901:-	BAZ1B	43333	chr7:72855855:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	ADAR->adenosine_deaminase,_RNA-specific,chr1:154554538-154600475:-,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGPAT1--MAP4K4	3	0	AGPAT1	3215	chr6:32143659:-	MAP4K4	28806	chr2:102476237:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	AGPAT1->1-acylglycerol-3-phosphate_O-acyltransferase_1,chr6:32135989-32145873:-,MAP4K4->chr2:102313312-102511149:+,mitogen-activated_protein_kinase_kinase_kinase_kinase_4	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP30--RPL41	3	0	ARHGAP30	10496	chr1:161018613:-	RPL41	16331	chr12:56511327:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	ARHGAP30->Rho_GTPase_activating_protein_30,chr1:161016736-161039760:-,RPL41->chr12:56510370-56511727:+,ribosomal_protein_L41	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP5L--CCT3	3	0	ATP5L	6550	chr11:118279790:+	CCT3	13108	chr1:156308072:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	ATP5L->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_G,chr11:118271869-118302211:+,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf39--PABPN1	3	0	C15orf39	7252	chr15:75500652:+	PABPN1	14301	chr14:23790841:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	C15orf39->chr15:75487984-75504510:+,chromosome_15_open_reading_frame_39,PABPN1->chr14:23790498-23795394:+,poly(A)_binding_protein_nuclear_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBS--PKM	3	0	CBS	15905	chr21:44479393:-	PKM	34135	chr15:72502185:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	CBS->chr21:44473301-44497053:-,cystathionine-beta-synthase,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CRBN--CCAR1	3	0	CRBN	2137	chr3:3216907:-	CCAR1	36036	chr10:70532745:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	CRBN->cereblon,chr3:3190676-3221394:-,CCAR1->cell_division_cycle_and_apoptosis_regulator_1,chr10:70480769-70552134:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-250I14.3--MME	3	0	CTC-250I14.3	2365	chr19:13250524:-	MME	21203	chr3:154857999:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	CTC-250I14.3->chr19:13250431-13251961:-,MME->Oncogene{Bushman},chr3:154741913-154901497:+,membrane_metallo-endopeptidase	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544N14.3--CKAP2L	3	0	CTD-2544N14.3	1549	chr8:38829982:-	CKAP2L	18724	chr2:113494773:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	CTD-2544N14.3->chr8:38827879-38830530:-,CKAP2L->chr2:113493930-113522254:-,cytoskeleton_associated_protein_2_like	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX56--OGFOD1	3	0	DDX56	7099	chr7:44608552:-	OGFOD1	13502	chr16:56485436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	DDX56->DEAD-box_helicase_56,chr7:44605016-44614650:-,OGFOD1->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_1,chr16:56485402-56513012:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC25--HCLS1	3	0	DNAJC25	6431	chr9:114415476:+	HCLS1	28563	chr3:121350757:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXL3--RPS4X	3	0	FBXL3	8679	chr13:77579525:-	RPS4X	18087	chrX:71493715:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	FBXL3->F-box_and_leucine-rich_repeat_protein_3,chr13:77566740-77601330:-,RPS4X->chrX:71475529-71497150:-,ribosomal_protein_S4,_X-linked	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPN3--SEC13	3	0	GPN3	3242	chr12:110902921:-	SEC13	25060	chr3:10342720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	GPN3->GPN-loop_GTPase_3,chr12:110890289-110907073:-,SEC13->SEC13_homolog,_nuclear_pore_and_COPII_coat_complex_component,chr3:10334815-10362862:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPA2B1--MED19	3	0	HNRNPA2B1	1958	chr7:26240192:-	MED19	16679	chr11:57471868:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,MED19->chr11:57471186-57479693:-,mediator_complex_subunit_19	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HPS4--EHD1	3	0	HPS4	17931	chr22:26853852:-	EHD1	29169	chr11:64645796:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	HPS4->HPS4,_biogenesis_of_lysosomal_organelles_complex_3_subunit_2,chr22:26839389-26879803:-,EHD1->EH_domain_containing_1,chr11:64619114-64655768:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--RBM47	3	0	KMT2A	42348	chr11:118390401:+	RBM47	70019	chr4:40426439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LUC7L2--SRSF11	3	0	LUC7L2	6740	chr7:139090540:+	SRSF11	32022	chr1:70715668:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYL1--MDH2	3	0	LYL1	3279	chr19:13211697:-	MDH2	15837	chr7:75694151:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	LYL1->Oncogene{Bushman},chr19:13209847-13213975:-,lymphoblastic_leukemia_associated_hematopoiesis_regulator_1,MDH2->chr7:75677369-75696826:+,malate_dehydrogenase_2	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	M6PR--MTPN	3	0	M6PR	7259	chr12:9094328:-	MTPN	11840	chr7:135661890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	M6PR->chr12:9092959-9102551:-,mannose-6-phosphate_receptor,_cation_dependent,MTPN->chr7:135611509-135662101:-,myotrophin	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAP3K9--RAD51B	3	0	MAP3K9	1769	chr14:71275483:-	RAD51B	48834	chr14:68934889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	MAP3K9->chr14:71189243-71276251:-,mitogen-activated_protein_kinase_kinase_kinase_9,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PBRM1--RALBP1	3	0	PBRM1	24634	chr3:52637537:-	RALBP1	52015	chr18:9522158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	PBRM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:52579368-52719933:-,polybromo_1,RALBP1->chr18:9475007-9538114:+,ralA_binding_protein_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFAS--KHSRP	3	0	PFAS	15047	chr17:8172007:+	KHSRP	25363	chr19:6418591:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	PFAS->chr17:8150936-8173809:+,phosphoribosylformylglycinamidine_synthase,KHSRP->KH-type_splicing_regulatory_protein,chr19:6413359-6424805:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RIMKLB--GNA12	3	0	RIMKLB	6401	chr12:8866637:+	GNA12	30534	chr7:2773135:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	RIMKLB->chr12:8834196-8935691:+,ribosomal_modification_protein_rimK-like_family_member_B,GNA12->G_protein_subunit_alpha_12,Oncogene{Bushman},chr7:2767746-2883958:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP6-145B8.3--LIX1L	3	0	RP6-145B8.3	2130	chrX:85340214:-	LIX1L	13171	chr1:145501268:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	RP6-145B8.3->chrX:85339720-85341343:-,LIX1L->chr1:145477085-145501669:+,limb_and_CNS_expressed_1_like	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF12--FARSA	3	0	TCF12	31001	chr15:57565369:+	FARSA	46498	chr19:13039247:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,FARSA->chr19:13033293-13044851:-,phenylalanyl-tRNA_synthetase_alpha_subunit	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THAP4--SRRM1	3	0	THAP4	5889	chr2:242545762:-	SRRM1	36733	chr1:24996653:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM38A--MAN1C1	3	0	TMEM38A	1215	chr19:16772152:+	MAN1C1	25377	chr1:26098148:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	TMEM38A->chr19:16771938-16800840:+,transmembrane_protein_38A,MAN1C1->chr1:25943959-26112698:+,mannosidase_alpha_class_1C_member_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMUB1--RBM4	3	0	TMUB1	2716	chr7:150778918:-	RBM4	11802	chr11:66411247:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	TMUB1->chr7:150778167-150780633:-,transmembrane_and_ubiquitin_like_domain_containing_1,RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR90--CPSF7	3	0	WDR90	17960	chr16:716704:+	CPSF7	22798	chr11:61196795:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	WDR90->WD_repeat_domain_90,chr16:699311-717833:+,CPSF7->chr11:61170121-61197503:-,cleavage_and_polyadenylation_specific_factor_7	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASF1B--SBF1	2	0	ASF1B	3902	chr19:14232344:-	SBF1	24209	chr22:50887079:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	ASF1B->anti-silencing_function_1B_histone_chaperone,chr19:14230321-14247768:-,SBF1->SET_binding_factor_1,chr22:50883429-50913454:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ1A--PRKAR1B	2	0	BAZ1A	2156	chr14:35343698:-	PRKAR1B	41621	chr7:751164:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK8--IFT88	2	0	CDK8	1631	chr13:26828906:+	IFT88	46263	chr13:21245112:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	CDK8->ArcherDX_panel,FoundationOne_panel,chr13:26828276-26979375:+,cyclin-dependent_kinase_8,IFT88->chr13:21140585-21265503:+,intraflagellar_transport_88	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COA1--ANAPC2	2	0	COA1	17190	chr7:43679048:-	ANAPC2	28465	chr9:140080808:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,ANAPC2->anaphase_promoting_complex_subunit_2,chr9:140069236-140082989:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FIS1--MTA3	2	0	FIS1	1422	chr7:100895176:-	MTA3	25776	chr2:42922905:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	FIS1->chr7:100882739-100895597:-,fission,_mitochondrial_1,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNBP4--ZNF726	2	0	FNBP4	6363	chr11:47772468:-	ZNF726	35860	chr19:24126296:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,ZNF726->chr19:24097678-24127961:+,zinc_finger_protein_726	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRPEL2--SLC25A37	2	0	GRPEL2	1187	chr5:148725179:+	SLC25A37	18796	chr8:23425835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	GRPEL2->GrpE_like_2,_mitochondrial,chr5:148724993-148734146:+,SLC25A37->chr8:23386318-23432976:+,solute_carrier_family_25_member_37	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HECTD1--ARHGAP5	2	0	HECTD1	3008	chr14:31675003:-	ARHGAP5	50403	chr14:32559708:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--AC003002.6	2	0	IGLL5	1480	chr22:23230439:+	AC003002.6	8567	chr19:57905556:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,AC003002.6->chr19:57901252-57931362:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--ZNF787	2	0	IGLL5	1480	chr22:23230439:+	ZNF787	11280	chr19:56600461:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPL1--MMADHC	2	0	MRPL1	7136	chr4:78815404:+	MMADHC	23059	chr2:150427685:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	MRPL1->chr4:78783674-78873944:+,mitochondrial_ribosomal_protein_L1,MMADHC->chr2:150426148-150444330:-,methylmalonic_aciduria_and_homocystinuria,_cblD_type	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFB8--PSPHP1	2	0	NDUFB8	1621	chr10:102289137:-	PSPHP1	16283	chr7:55840874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	NDUFB8->NADH:ubiquinone_oxidoreductase_subunit_B8,chr10:102265385-102289638:-,chr10:102267203-102289757:-,PSPHP1->chr7:55832490-55840981:+,phosphoserine_phosphatase_pseudogene_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTP4A1--LUC7L2	2	0	PTP4A1	4040	chr6:64282624:+	LUC7L2	19015	chr7:139083345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RHOT1--LRBA	2	0	RHOT1	1276	chr17:30469748:+	LRBA	77342	chr4:151412187:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23A--RBM39	2	0	RPL23A	2498	chr17:27047908:+	RBM39	24647	chr20:34301018:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCAD1--TLE1	2	0	SMARCAD1	3092	chr4:95134303:+	TLE1	37799	chr9:84249216:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	SMARCAD1->SWI/SNF-related,_matrix-associated_actin-dependent_regulator_of_chromatin,_subfamily_a,_containing_DEAD/H_box_1,chr4:95128762-95212443:+,TLE1->chr9:84198598-84304220:-,transducin_like_enhancer_of_split_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STK38--PSMD6	2	0	STK38	1281	chr6:36514967:-	PSMD6	30840	chr3:63996631:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	STK38->chr6:36461669-36515247:-,serine/threonine_kinase_38,PSMD6->chr3:63996225-64009658:-,proteasome_26S_subunit,_non-ATPase_6	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP9X--POLR3C	2	0	USP9X	1475	chrX:40945362:+	POLR3C	56270	chr1:145608659:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	USP9X->chrX:40944888-41095832:+,ubiquitin_specific_peptidase_9,_X-linked,POLR3C->chr1:145592605-145611025:-,polymerase_(RNA)_III_subunit_C	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR37--PFKP	2	0	WDR37	11866	chr10:1142186:+	PFKP	45772	chr10:3172011:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+,PFKP->chr10:3108525-3179904:+,phosphofructokinase,_platelet	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF177--RABL6	2	0	ZNF177	1231	chr19:9435080:+	RABL6	25636	chr9:139717977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	ZNF177->chr19:9434850-9493293:+,chr19:9435021-9493293:+,zinc_finger_protein_177,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTBP2--POC5	1	1	PTBP2	2930	chr1:97189150:+	POC5	36340	chr5:74990656:-	ONLY_REF_SPLICE	NO	0	3	1	0.4	0.0083	0.0083	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,POC5->POC5_centriolar_protein,chr5:74969949-75013313:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
NCIH2122_LUNG	CDCA8--GRIK3	109	86	CDCA8	1616	chr1:38158705:+	GRIK3	15726	chr1:37356697:-	ONLY_REF_SPLICE	YES	103	0	0.65	1	1.5049	1.1874	{Klijn_CCL:Lung=1},CDCA8->cell_division_cycle_associated_8,chr1:38158090-38175391:+,GRIK3->chr1:37261128-37499730:-,glutamate_ionotropic_receptor_kainate_type_subunit_3	NCIH2122_LUNG	0.65	1	2.6923	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	CDCA8--GRIK3	49	89	CDCA8	2657	chr1:38161622:+	GRIK3	15726	chr1:37356697:-	ONLY_REF_SPLICE	YES	87	0	0.61	1	0.6765	1.2288	{Klijn_CCL:Lung=1},CDCA8->cell_division_cycle_associated_8,chr1:38158090-38175391:+,GRIK3->chr1:37261128-37499730:-,glutamate_ionotropic_receptor_kainate_type_subunit_3	NCIH2122_LUNG	0.61	1	1.9053	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	RDX--SS18	31	0	RDX	18191	chr11:110101311:-	SS18	50746	chr18:23596784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.428	0	RDX->chr11:110045605-110167447:-,radixin,SS18->Oncogene{Bushman},SS18,_nBAF_chromatin_remodeling_complex_subunit,chr18:23596578-23671181:-	NCIH2122_LUNG	1	1	0.428	TRUE	0	0	0	2	0	TRUE	ACH-000311
NCIH2122_LUNG	PVT1--MTF1	24	21	PVT1	8346	chr8:128903244:+	MTF1	39629	chr1:38283154:-	ONLY_REF_SPLICE	YES	40	12	0.53	0.79	0.3314	0.2899	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MTF1->chr1:38275239-38325292:-,metal-regulatory_transcription_factor_1	NCIH2122_LUNG	0.53	0.79	0.6213	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	RDX--SS18	10	0	RDX	18187	chr11:110101315:-	SS18	50742	chr18:23596788:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1381	0	RDX->chr11:110045605-110167447:-,radixin,SS18->Oncogene{Bushman},SS18,_nBAF_chromatin_remodeling_complex_subunit,chr18:23596578-23671181:-	NCIH2122_LUNG	1	1	0.1381	TRUE	0	0	0	2	0	TRUE	ACH-000311
NCIH2122_LUNG	OPN3--CHRM3-AS2	4	5	OPN3	2592	chr1:241803184:-	CHRM3-AS2	19871	chr1:239877564:-	ONLY_REF_SPLICE	YES	108	0	0.08	1	0.0552	0.069	OPN3->chr1:241753404-241840678:-,opsin_3,CHRM3-AS2->CHRM3_antisense_RNA_2,chr1:239866684-239893765:-	NCIH2122_LUNG	0.08	1	0.1242	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	HCG4P5--SPP1	3	5	HCG4P5	1476	chr6:29910369:-	SPP1	5041	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.0414	0.069	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	NCIH2122_LUNG	0.62	1	0.1104	TRUE	0	1	0	4	1	TRUE	ACH-000311
NCIH2122_LUNG	RNF2--LINC00970	4	1	RNF2	1286	chr1:185014781:+	LINC00970	15916	chr1:169025471:-	ONLY_REF_SPLICE	YES	49	0	0.09	1	0.0552	0.0138	RNF2->chr1:185014496-185071740:+,ring_finger_protein_2,LINC00970->chr1:168873143-169056243:-,long_intergenic_non-protein_coding_RNA_970	NCIH2122_LUNG	0.09	1	0.069	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	RNF2--LINC00970	3	3	RNF2	1286	chr1:185014781:+	LINC00970	14808	chr1:169029757:-	ONLY_REF_SPLICE	YES	49	0	0.11	1	0.0414	0.0414	RNF2->chr1:185014496-185071740:+,ring_finger_protein_2,LINC00970->chr1:168873143-169056243:-,long_intergenic_non-protein_coding_RNA_970	NCIH2122_LUNG	0.11	1	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	C17orf76-AS1--PTCD3	3	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0414	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	NCIH2122_LUNG	1	1	0.0414	TRUE	0	3	0	8	0	TRUE	ACH-000311
NCIH2122_LUNG	RDX--SS18	3	0	RDX	18192	chr11:110101310:-	SS18	50747	chr18:23596783:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	RDX->chr11:110045605-110167447:-,radixin,SS18->Oncogene{Bushman},SS18,_nBAF_chromatin_remodeling_complex_subunit,chr18:23596578-23671181:-	NCIH2122_LUNG	1	1	0.0414	TRUE	0	0	0	2	0	TRUE	ACH-000311
NCIH2122_LUNG	RHOA--KRT17	3	0	RHOA	6587	chr3:49405930:-	KRT17	13988	chr17:39780816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,KRT17->chr17:39775689-39781094:-,keratin_17	NCIH2122_LUNG	1	1	0.0414	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	CDCA8--GRIK3	2	0	CDCA8	1161	chr1:38158250:+	GRIK3	15726	chr1:37356697:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	{Klijn_CCL:Lung=1},CDCA8->cell_division_cycle_associated_8,chr1:38158090-38175391:+,GRIK3->chr1:37261128-37499730:-,glutamate_ionotropic_receptor_kainate_type_subunit_3	NCIH2122_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	RP11-344P13.4--GRIK3	1	1	RP11-344P13.4	1643	chr1:121251539:-	GRIK3	21202	chr1:37271927:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0138	0.0138	RP11-344P13.4->chr1:121236177-121252181:-,GRIK3->chr1:37261128-37499730:-,glutamate_ionotropic_receptor_kainate_type_subunit_3	NCIH2122_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000311
HSC2_UPPER_AERODIGESTIVE_TRACT	LUC7L--CLEC18A	79	40	LUC7L	9816	chr16:249061:-	CLEC18A	17094	chr16:69985164:+	ONLY_REF_SPLICE	YES	34	0	0.78	1	0.8714	0.4412	LUC7L->LUC7_like,chr16:238968-279462:-,CLEC18A->C-type_lectin_domain_family_18_member_A,chr16:69984810-69998141:+	HSC2_UPPER_AERODIGESTIVE_TRACT	0.78	1	1.3126	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	SAE1--BBC3	32	13	SAE1	3734	chr19:47634285:+	BBC3	24569	chr19:47730011:-	ONLY_REF_SPLICE	YES	76	3	0.37	0.94	0.353	0.1434	LOCAL_INVERSION:+:-:[10195],SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,BBC3->BCL2_binding_component_3,Oncogene{Bushman},chr19:47724081-47736023:-	HSC2_UPPER_AERODIGESTIVE_TRACT	0.37	0.94	0.4964	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	GS1-124K5.12--TMEM248	21	11	GS1-124K5.12	5666	chr7:66038372:-	TMEM248	14236	chr7:66406835:+	ONLY_REF_SPLICE	YES	28	2	0.53	0.94	0.2316	0.1213	GS1-124K5.12->chr7:66010634-66057373:-,TMEM248->chr7:66386212-66423538:+,transmembrane_protein_248	HSC2_UPPER_AERODIGESTIVE_TRACT	0.53	0.94	0.3529	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	BCAS3--C17orf64	14	18	BCAS3	3605	chr17:58761397:+	C17orf64	62545	chr17:58503144:+	ONLY_REF_SPLICE	YES	16	0	0.67	1	0.1544	0.1985	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,C17orf64->chr17:58469790-58508782:+,chromosome_17_open_reading_frame_64	HSC2_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.3529	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	ABL2--PREX1	12	8	ABL2	1444	chr1:179198376:-	PREX1	45225	chr20:47276599:-	ONLY_REF_SPLICE	YES	1	2	0.95	0.91	0.1324	0.0882	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1	HSC2_UPPER_AERODIGESTIVE_TRACT	0.91	0.95	0.2206	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	SAE1--BBC3	8	13	SAE1	3734	chr19:47634285:+	BBC3	22877	chr19:47731703:-	ONLY_REF_SPLICE	YES	76	0	0.22	1	0.0882	0.1434	LOCAL_INVERSION:+:-:[10195],SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,BBC3->BCL2_binding_component_3,Oncogene{Bushman},chr19:47724081-47736023:-	HSC2_UPPER_AERODIGESTIVE_TRACT	0.22	1	0.2316	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	ANXA4--SAE1	11	0	ANXA4	6479	chr2:70008706:+	SAE1	35151	chr19:47653459:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1213	0	ANXA4->annexin_A4,chr2:69871557-70053596:+,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	ALDOA--KRT17	8	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0882	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0882	TRUE	0	0	0	10	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	8	0	KRT5	1675	chr12:52913797:-	KRT15	14088	chr17:39674807:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0882	0	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0882	TRUE	0	1	1	2	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MED12L--DNAJC25	5	0	MED12L	18793	chr3:150959656:+	DNAJC25	61169	chr9:114409387:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0552	0	MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like,DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0552	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	PREX1--DUSP12	4	1	PREX1	16002	chr20:47282821:-	DUSP12	46623	chr1:161721445:+	ONLY_REF_SPLICE	YES	2	49	0.71	0.09	0.0441	0.011	PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,DUSP12->chr1:161719548-161727028:+,dual_specificity_phosphatase_12	HSC2_UPPER_AERODIGESTIVE_TRACT	0.09	0.71	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	SAE1--BBC3	3	3	SAE1	3734	chr19:47634285:+	BBC3	26410	chr19:47725175:-	ONLY_REF_SPLICE	YES	76	15	0.07	0.29	0.0331	0.0331	LOCAL_INVERSION:+:-:[10195],SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,BBC3->BCL2_binding_component_3,Oncogene{Bushman},chr19:47724081-47736023:-	HSC2_UPPER_AERODIGESTIVE_TRACT	0.07	0.29	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	KIAA0020--PDSS1	2	0	KIAA0020	1197	chr9:2844045:-	PDSS1	32170	chr10:27024169:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	KIAA0020->chr9:2720469-2844241:-,PDSS1->chr10:26986588-27035727:+,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_1	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	AC009948.5--OSBPL6	1	2	AC009948.5	5230	chr2:179291388:+	OSBPL6	21487	chr2:179188904:+	ONLY_REF_SPLICE	YES	7	4	0.3	0.43	0.011	0.0221	LOCAL_REARRANGEMENT:+:[14506],AC009948.5->chr2:179278666-179304970:+,OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6	HSC2_UPPER_AERODIGESTIVE_TRACT	0.3	0.43	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	AC009948.5--OSBPL6	1	2	AC009948.5	1175	chr2:179278840:+	OSBPL6	21487	chr2:179188904:+	ONLY_REF_SPLICE	NO	10	4	0.23	0.43	0.011	0.0221	LOCAL_REARRANGEMENT:+:[14506],AC009948.5->chr2:179278666-179304970:+,OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6	HSC2_UPPER_AERODIGESTIVE_TRACT	0.23	0.43	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	AC009948.5--OSBPL6	1	2	AC009948.5	5230	chr2:179291388:+	OSBPL6	22580	chr2:179192983:+	ONLY_REF_SPLICE	YES	7	6	0.3	0.33	0.011	0.0221	LOCAL_REARRANGEMENT:+:[14506],AC009948.5->chr2:179278666-179304970:+,OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6	HSC2_UPPER_AERODIGESTIVE_TRACT	0.3	0.33	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	AC009948.5--OSBPL6	1	2	AC009948.5	5074	chr2:179291232:+	OSBPL6	22580	chr2:179192983:+	ONLY_REF_SPLICE	YES	8	6	0.27	0.33	0.011	0.0221	LOCAL_REARRANGEMENT:+:[14506],AC009948.5->chr2:179278666-179304970:+,OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6	HSC2_UPPER_AERODIGESTIVE_TRACT	0.27	0.33	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	AC009948.5--OSBPL6	1	2	AC009948.5	1175	chr2:179278840:+	OSBPL6	22580	chr2:179192983:+	ONLY_REF_SPLICE	YES	10	6	0.23	0.33	0.011	0.0221	LOCAL_REARRANGEMENT:+:[14506],AC009948.5->chr2:179278666-179304970:+,OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6	HSC2_UPPER_AERODIGESTIVE_TRACT	0.23	0.33	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	AC009948.5--OSBPL6	1	2	AC009948.5	5074	chr2:179291232:+	OSBPL6	21487	chr2:179188904:+	ONLY_REF_SPLICE	YES	8	4	0.27	0.43	0.011	0.0221	LOCAL_REARRANGEMENT:+:[14506],AC009948.5->chr2:179278666-179304970:+,OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6	HSC2_UPPER_AERODIGESTIVE_TRACT	0.27	0.43	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	BCAS3--C17orf64	1	1	BCAS3	3605	chr17:58761397:+	C17orf64	64580	chr17:58506723:+	ONLY_REF_SPLICE	YES	16	11	0.11	0.15	0.011	0.011	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,C17orf64->chr17:58469790-58508782:+,chromosome_17_open_reading_frame_64	HSC2_UPPER_AERODIGESTIVE_TRACT	0.11	0.15	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	GS1-124K5.12--TMEM248	1	1	GS1-124K5.12	1130	chr7:66057244:-	TMEM248	14236	chr7:66406835:+	ONLY_REF_SPLICE	YES	19	2	0.1	0.5	0.011	0.011	GS1-124K5.12->chr7:66010634-66057373:-,TMEM248->chr7:66386212-66423538:+,transmembrane_protein_248	HSC2_UPPER_AERODIGESTIVE_TRACT	0.1	0.5	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	RPA3-AS1--TMIGD1	1	1	RPA3-AS1	4247	chr7:7715839:+	TMIGD1	20399	chr17:28656547:-	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.011	0.011	RPA3-AS1->chr7:7680342-8043689:+,TMIGD1->chr17:28643351-28661077:-,transmembrane_and_immunoglobulin_domain_containing_1	HSC2_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000472
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	15	0	PTMA	6024	chr2:232576657:+	ANP32B	19883	chr9:100777658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.149	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.149	TRUE	0	0	0	3	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	12	0	PTMA	6054	chr2:232576687:+	ANP32B	19883	chr9:100777658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1192	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1192	TRUE	0	0	0	3	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV4-1	6	0	AC096579.7	3828	chr2:89157090:-	IGKV4-1	8932	chr2:89185420:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0	LOCAL_INVERSION:-:+:[19260],AC096579.7->chr2:89130700-89165653:-,IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0596	TRUE	0	11	0	1	8	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--SEPT7	6	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0596	TRUE	1	1	0	18	1	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	5	0	PTMA	6042	chr2:232576675:+	ANP32B	18817	chr9:100774701:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0497	TRUE	0	0	0	3	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	5	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0497	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0497	TRUE	1	10	0	18	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COX7A2L--MTA3	2	0	COX7A2L	8717	chr2:42588230:-	MTA3	29516	chr2:42867313:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LOCAL_INVERSION:-:+:[69481],COX7A2L->chr2:42560686-42652228:-,cytochrome_c_oxidase_subunit_7A2_like,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--CHMP1A	2	0	IGLL5	1480	chr22:23230439:+	CHMP1A	12113	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	1	0	2	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MON1A--TCP1	2	0	MON1A	1565	chr3:49967042:-	TCP1	19665	chr6:160201119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	MON1A->MON1_homolog_A,_secretory_trafficking_associated,chr3:49946302-49967606:-,TCP1->chr6:160199530-160210781:-,t-complex_1	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RIMKLB--USP14	2	0	RIMKLB	6401	chr12:8866637:+	USP14	29961	chr18:196637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	RIMKLB->chr12:8834196-8935691:+,ribosomal_modification_protein_rimK-like_family_member_B,USP14->chr18:158383-214629:+,ubiquitin_specific_peptidase_14	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC24B--LEF1	2	0	SEC24B	14317	chr4:110437796:+	LEF1	49033	chr4:108969907:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SEC24B->SEC24_homolog_B,_COPII_coat_complex_component,chr4:110354928-110462052:+,LEF1->Oncogene{Bushman},chr4:108968701-109090112:-,lymphoid_enhancer_binding_factor_1	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEPHS1--CORO1C	2	0	SEPHS1	11595	chr10:13364835:-	CORO1C	22594	chr12:109095099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SEPHS1->chr10:13359424-13390297:-,selenophosphate_synthetase_1,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ULK3--EWSR1	2	0	ULK3	6596	chr15:75130092:-	EWSR1	31403	chr22:29695589:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	ULK3->chr15:75128457-75135687:-,unc-51_like_kinase_3,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR41--TBCA	2	0	WDR41	7042	chr5:76785282:-	TBCA	32720	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},LOCAL_REARRANGEMENT:-:[70555],WDR41->WD_repeat_domain_41,chr5:76721795-76916436:-,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	1	1	0	3	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPS17--CLIP2	1	1	MRPS17	2531	chr7:55974072:+	CLIP2	15529	chr7:73731810:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0099	0.0099	MRPS17->chr7:55954970-56022932:+,chr7:56019512-56024192:+,mitochondrial_ribosomal_protein_S17,CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000245
HS343T_FIBROBLAST	ATAD2--NCL	45	0	ATAD2	8977	chr8:124382155:-	NCL	40558	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5335	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Artery_-_Tibial=1},ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,NCL->chr2:232318242-232348352:-,nucleolin	HS343T_FIBROBLAST	1	1	0.5335	TRUE	0	0	0	2	0	TRUE	ACH-000184
HS343T_FIBROBLAST	VIM-AS1--FN1	10	0	VIM-AS1	1083	chr10:17271902:-	FN1	45686	chr2:216244042:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1186	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS343T_FIBROBLAST	1	1	0.1186	TRUE	0	0	0	1	0	TRUE	ACH-000184
HS343T_FIBROBLAST	DAPK1--SMC5	2	0	DAPK1	21558	chr9:90283589:+	SMC5	59836	chr9:72967107:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx&tcga_normals:1/3694=0.03%,DAPK1->Oncogene{Bushman},chr9:90112143-90323548:+,death_associated_protein_kinase_1,SMC5->chr9:72873937-72969804:+,structural_maintenance_of_chromosomes_5	HS343T_FIBROBLAST	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000184
HS343T_FIBROBLAST	FNBP4--NUP160	2	0	FNBP4	2468	chr11:47786822:-	NUP160	29772	chr11:47859175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	LOCAL_REARRANGEMENT:-:[10644],FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	HS343T_FIBROBLAST	1	1	0.0237	TRUE	0	0	0	6	0	TRUE	ACH-000184
HS343T_FIBROBLAST	LRP5--C11orf24	2	0	LRP5	6121	chr11:68133170:+	C11orf24	35199	chr11:68035719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:+:-:[40608],LRP5->LDL_receptor_related_protein_5,Oncogene{Bushman},chr11:68080077-68216743:+,C11orf24->chr11:68028803-68039469:-,chromosome_11_open_reading_frame_24	HS343T_FIBROBLAST	1	1	0.0237	TRUE	0	2	0	3	1	TRUE	ACH-000184
HS343T_FIBROBLAST	PRKD1--CTD-2251F13.1	1	1	PRKD1	1600	chr14:30660505:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0119	0.0119	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	HS343T_FIBROBLAST	1	1	0.0238	TRUE	0	1	0	5	1	TRUE	ACH-000184
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	262	135	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	0	4	1	0.99	2.3758	1.2242	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	3.6	TRUE	0	2	1	16	2	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	254	0	NCL	6884	chr2:232325380:-	PTMA	22009	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.3033	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.3033	TRUE	1	0	0	7	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	140	0	NCL	6884	chr2:232325380:-	PTMA	22018	chr2:232576655:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2695	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2695	TRUE	1	0	0	7	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	127	2	NCL	6884	chr2:232325380:-	PTMA	21452	chr2:232576089:+	INCL_NON_REF_SPLICE	YES	571	2865	0.18	0.04	1.1516	0.0181	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.18	1.1697	TRUE	1	0	0	7	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFF1--TMSB4X	117	28	AFF1	3385	chr4:87869723:+	TMSB4X	36304	chrX:12994365:+	ONLY_REF_SPLICE	YES	5	70	0.97	0.67	1.061	0.2539	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.97	1.3149	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A2--PTMA	82	1	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	333	6	0.2	0.93	0.7436	0.0091	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.93	0.7527	TRUE	0	0	0	10	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	36	0	NCL	6884	chr2:232325380:-	PTMA	22003	chr2:232576640:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3265	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3265	TRUE	1	0	0	7	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	2	127	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	0	4	1	0.97	0.0181	1.1516	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.1697	TRUE	0	2	1	16	2	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASC9--RP11-300E4.2	13	5	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	40	0	0.31	1	0.1179	0.0453	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	0.1632	TRUE	0	23	0	19	23	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	5	0	NCL	6884	chr2:232325380:-	PTMA	22021	chr2:232576658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0453	TRUE	1	0	0	7	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGF1R--SYNM	3	1	IGF1R	3251	chr15:99251336:+	SYNM	42397	chr15:99638610:+	INCL_NON_REF_SPLICE	YES	6	1	0.4	0.8	0.0272	0.0091	IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,SYNM->chr15:99638420-99675798:+,synemin	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.8	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASC9--RP11-300E4.2	3	0	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	12	0	10	12	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2012K14.6--SLC7A5	3	0	CTD-2012K14.6	1664	chr16:67597198:-	SLC7A5	9965	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	CTD-2012K14.6->chr16:67583117-67597861:-,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RICTOR--SSBP2	3	0	RICTOR	1298	chr5:39074213:-	SSBP2	49835	chr5:80911376:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0181	0.0091	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0272	TRUE	0	4	1	7	4	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADD1--NOP14	2	0	ADD1	1168	chr4:2845751:+	NOP14	36289	chr4:2956290:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:+:-:[7857],ADD1->adducin_1,chr4:2845584-2931803:+,NOP14->NOP14_nucleolar_protein,chr4:2939660-2965112:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHCHD3--EXOC4	2	0	CHCHD3	7933	chr7:132659929:-	EXOC4	32133	chr7:133160082:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	4	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	6	0	16	3	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	38132	chr10:5853919:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GSE1--SLC7A5	2	0	GSE1	2365	chr16:85647004:+	SLC7A5	30231	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	3	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPK--MGAT1	2	0	HNRNPK	1152	chr9:86595418:-	MGAT1	18974	chr5:180236076:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	HNRNPK->Oncogene{Bushman},chr9:86582998-86595569:-,heterogeneous_nuclear_ribonucleoprotein_K,MGAT1->chr5:180217541-180242652:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,2-N-acetylglucosaminyltransferase	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGF1R--SYNM	2	0	IGF1R	3251	chr15:99251336:+	SYNM	46727	chr15:99666927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,SYNM->chr15:99638420-99675798:+,synemin	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAD1L1--CTBP1	2	0	MAD1L1	35008	chr7:1937836:-	CTBP1	45730	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIK3CD--ITCH	2	0	PIK3CD	1071	chr1:9711860:+	ITCH	40685	chr20:33065577:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	PIK3CD->Oncogene{Bushman},chr1:9711790-9789172:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_delta,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV1--MGAT4A	2	0	REV1	1219	chr2:100106279:-	MGAT4A	34738	chr2:99343030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-,MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RICTOR--SLAIN2	2	0	RICTOR	1298	chr5:39074213:-	SLAIN2	53074	chr4:48422142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF4--CTBP1	2	0	RNF4	2916	chr4:2470985:+	CTBP1	27869	chr4:1232125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	RNF4->chr4:2463947-2627047:+,ring_finger_protein_4,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
SNU119_OVARY	MLLT6--GPSM2	867	98	MLLT6	1200	chr17:36861994:+	GPSM2	38367	chr1:109461235:+	ONLY_REF_SPLICE	YES	37	388	0.96	0.71	6.3922	0.7225	MLLT6->Oncogene{Bushman},chr17:36861795-36886056:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_6,GPSM2->G-protein_signaling_modulator_2,chr1:109417972-109477167:+	SNU119_OVARY	0.71	0.96	7.1147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	STARD7--TTC27	392	173	STARD7	3273	chr2:96860696:-	TTC27	25149	chr2:32958895:+	ONLY_REF_SPLICE	YES	397	30	0.59	0.95	2.8902	1.2755	STARD7->StAR_related_lipid_transfer_domain_containing_7,chr2:96850597-96874563:-,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	SNU119_OVARY	0.59	0.95	4.1657	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	CTDSPL2--CASC4	317	108	CTDSPL2	3072	chr15:44751398:+	CASC4	45857	chr15:44705534:+	ONLY_REF_SPLICE	YES	75	163	0.85	0.72	2.3372	0.7963	LOCAL_REARRANGEMENT:+:[11476],CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+	SNU119_OVARY	0.72	0.85	3.1335	TRUE	0	1	0	2	1	TRUE	ACH-000635
SNU119_OVARY	NADK--SSU72	319	34	NADK	3169	chr1:1709728:-	SSU72	24826	chr1:1480382:-	ONLY_REF_SPLICE	YES	4	354	0.99	0.5	2.3519	0.2507	NADK->NAD_kinase,chr1:1682671-1711896:-,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SNU119_OVARY	0.5	0.99	2.6026	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ITGB3--MYL4	261	33	ITGB3	2181	chr17:45351870:+	MYL4	26634	chr17:45286755:+	ONLY_REF_SPLICE	YES	23	2	0.93	0.99	1.9243	0.2433	LOCAL_INVERSION:+,chr17:+:[30167],ITGB3->chr17:45331212-45421658:+,chr17:45331263-45421658:+,integrin_subunit_beta_3,MYL4->chr17:45277812-45301045:+,myosin_light_chain_4	SNU119_OVARY	0.93	0.99	2.1676	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	SUGP2--UPF1	65	28	SUGP2	13645	chr19:19112422:-	UPF1	25447	chr19:18956789:+	ONLY_REF_SPLICE	YES	93	2	0.5	0.98	0.4792	0.2064	SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-,UPF1->UPF1,_RNA_helicase_and_ATPase,chr19:18942747-18979045:+	SNU119_OVARY	0.5	0.98	0.6856	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	SUPT7L--MED31	62	21	SUPT7L	5104	chr2:27880212:-	MED31	16025	chr17:6547979:-	ONLY_REF_SPLICE	YES	35	57	0.7	0.59	0.4571	0.1548	SUPT7L->SPT7-like_STAGA_complex_gamma_subunit,chr2:27873679-27886676:-,MED31->chr17:6546635-6554954:-,mediator_complex_subunit_31	SNU119_OVARY	0.59	0.7	0.6119	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	TPD52--KLF12	59	8	TPD52	6214	chr8:81083660:-	KLF12	30674	chr13:74569190:-	ONLY_REF_SPLICE	YES	225	5	0.23	0.93	0.435	0.059	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,KLF12->Kruppel-like_factor_12,chr13:74260226-74708394:-	SNU119_OVARY	0.23	0.93	0.494	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	DPY19L3--ZNF507	51	33	DPY19L3	4034	chr19:32902278:+	ZNF507	43075	chr19:32873373:+	ONLY_REF_SPLICE	YES	26	46	0.76	0.65	0.376	0.2433	LOCAL_REARRANGEMENT:+:[17876],DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans),ZNF507->chr19:32836500-32878573:+,zinc_finger_protein_507	SNU119_OVARY	0.65	0.76	0.6193	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	STARD7--TTC27	5	174	STARD7	4369	chr2:96858995:-	TTC27	25149	chr2:32958895:+	INCL_NON_REF_SPLICE	YES	381	30	0.32	0.86	0.0369	1.2829	STARD7->StAR_related_lipid_transfer_domain_containing_7,chr2:96850597-96874563:-,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	SNU119_OVARY	0.32	0.86	1.3198	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	STARD7--TTC27	1	173	STARD7	4324	chr2:96859040:-	TTC27	25149	chr2:32958895:+	ONLY_REF_SPLICE	NO	384	30	0.31	0.85	0.0074	1.2755	STARD7->StAR_related_lipid_transfer_domain_containing_7,chr2:96850597-96874563:-,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	SNU119_OVARY	0.31	0.85	1.2829	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	CTDSPL2--CASC4	12	112	CTDSPL2	3072	chr15:44751398:+	CASC4	41806	chr15:44695085:+	ONLY_REF_SPLICE	YES	75	202	0.62	0.38	0.0885	0.8258	LOCAL_REARRANGEMENT:+:[11476],CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+	SNU119_OVARY	0.38	0.62	0.9143	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	TTC28-AS1--UNC79	33	9	TTC28-AS1	5841	chr22:28331218:+	UNC79	73157	chr14:94139697:+	ONLY_REF_SPLICE	YES	3	1	0.93	0.98	0.2433	0.0664	TTC28-AS1->TTC28_antisense_RNA_1,chr22:28315364-28404569:+,UNC79->chr14:93799565-94174222:+,unc-79_homolog_(C._elegans)	SNU119_OVARY	0.93	0.98	0.3097	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	LHFPL2--AP3B1	31	13	LHFPL2	12046	chr5:77860636:-	AP3B1	25271	chr5:77563419:-	ONLY_REF_SPLICE	YES	3	93	0.94	0.32	0.2286	0.0958	LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	SNU119_OVARY	0.32	0.94	0.3244	TRUE	0	1	0	1	1	TRUE	ACH-000635
SNU119_OVARY	AC009961.3--PLA2R1	29	13	AC009961.3	2693	chr2:160567228:-	PLA2R1	22549	chr2:160843869:-	ONLY_REF_SPLICE	YES	3	10	0.93	0.81	0.2138	0.0958	AC009961.3->chr2:160527219-160568946:-,PLA2R1->chr2:160788519-160919121:-,phospholipase_A2_receptor_1	SNU119_OVARY	0.81	0.93	0.3096	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ADAM17--CYS1	28	1	ADAM17	14940	chr2:9642302:-	CYS1	27651	chr2:10206083:-	ONLY_REF_SPLICE	YES	146	0	0.17	1	0.2064	0.0074	ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-,CYS1->chr2:10196907-10221071:-,cystin_1	SNU119_OVARY	0.17	1	0.2138	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	NADK--SSU72	22	20	NADK	2712	chr1:1710185:-	SSU72	24826	chr1:1480382:-	ONLY_REF_SPLICE	YES	0	354	1	0.11	0.1622	0.1475	NADK->NAD_kinase,chr1:1682671-1711896:-,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SNU119_OVARY	0.11	1	0.3097	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	TTC28-AS1--UNC79	18	12	TTC28-AS1	6993	chr22:28336159:+	UNC79	73157	chr14:94139697:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.1327	0.0885	TTC28-AS1->TTC28_antisense_RNA_1,chr22:28315364-28404569:+,UNC79->chr14:93799565-94174222:+,unc-79_homolog_(C._elegans)	SNU119_OVARY	0.97	1	0.2212	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	CRTC1--SUGP2	18	10	CRTC1	7647	chr19:18860685:+	SUGP2	40398	chr19:19105295:-	ONLY_REF_SPLICE	YES	26	114	0.52	0.2	0.1327	0.0737	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-	SNU119_OVARY	0.2	0.52	0.2064	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	KIAA0753--SUPT7L	16	13	KIAA0753	9795	chr17:6524108:-	SUPT7L	29027	chr2:27884310:-	INCL_NON_REF_SPLICE	YES	18	61	0.62	0.32	0.118	0.0958	KIAA0753->KIAA0753,chr17:6481468-6544247:-,SUPT7L->SPT7-like_STAGA_complex_gamma_subunit,chr2:27873679-27886676:-	SNU119_OVARY	0.32	0.62	0.2138	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	TBL1XR1--RP11-706D8.3	18	4	TBL1XR1	10939	chr3:176782708:-	RP11-706D8.3	34353	chr3:177056312:-	ONLY_REF_SPLICE	YES	462	0	0.05	1	0.1327	0.0295	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-706D8.3->chr3:177055416-177066954:-	SNU119_OVARY	0.05	1	0.1622	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	CRTC1--SUGP2	14	12	CRTC1	8721	chr19:18864383:+	SUGP2	39925	chr19:19105768:-	INCL_NON_REF_SPLICE	YES	29	95	0.47	0.21	0.1032	0.0885	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-	SNU119_OVARY	0.21	0.47	0.1917	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	HELLS--TBC1D12	14	2	HELLS	4851	chr10:96317952:+	TBC1D12	39313	chr10:96256812:+	ONLY_REF_SPLICE	YES	27	15	0.37	0.52	0.1032	0.0147	LOCAL_REARRANGEMENT:+:[9860],HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,TBC1D12->TBC1_domain_family_member_12,chr10:96162261-96295687:+	SNU119_OVARY	0.37	0.52	0.1179	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	NADK--SSU72	13	6	NADK	2712	chr1:1710185:-	SSU72	25841	chr1:1479367:-	ONLY_REF_SPLICE	YES	0	449	1	0.04	0.0958	0.0442	NADK->NAD_kinase,chr1:1682671-1711896:-,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SNU119_OVARY	0.04	1	0.14	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	DDX23--ASB8	14	1	DDX23	1759	chr12:49245867:-	ASB8	20259	chr12:48551528:-	ONLY_REF_SPLICE	YES	4	0	0.79	1	0.1032	0.0074	DDX23->DEAD-box_helicase_23,chr12:49223547-49246625:-,ASB8->ankyrin_repeat_and_SOCS_box_containing_8,chr12:48541571-48574996:-	SNU119_OVARY	0.79	1	0.1106	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MLLT6--GPSM2	3	42	MLLT6	1200	chr17:36861994:+	GPSM2	38450	chr1:109461318:+	INCL_NON_REF_SPLICE	YES	37	364	0.55	0.11	0.0221	0.3097	MLLT6->Oncogene{Bushman},chr17:36861795-36886056:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_6,GPSM2->G-protein_signaling_modulator_2,chr1:109417972-109477167:+	SNU119_OVARY	0.11	0.55	0.3318	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	NADK--SSU72	7	22	NADK	3169	chr1:1709728:-	SSU72	24862	chr1:1480346:-	INCL_NON_REF_SPLICE	YES	4	334	0.88	0.08	0.0516	0.1622	NADK->NAD_kinase,chr1:1682671-1711896:-,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SNU119_OVARY	0.08	0.88	0.2138	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	WDHD1--RP11-112J1.2	12	1	WDHD1	2507	chr14:55480203:-	RP11-112J1.2	36065	chr14:59415031:+	ONLY_REF_SPLICE	YES	126	0	0.09	1	0.0885	0.0074	WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-,RP11-112J1.2->chr14:59294952-59484046:+	SNU119_OVARY	0.09	1	0.0959	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	C19orf43--ENOX1	12	0	C19orf43	1463	chr19:12845127:-	ENOX1	13293	chr13:43935588:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0885	0	C19orf43->chr19:12841454-12845589:-,chromosome_19_open_reading_frame_43,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	SNU119_OVARY	1	1	0.0885	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	LIMK1--S100A1	12	0	LIMK1	11265	chr7:73522230:+	S100A1	26700	chr1:153604204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0885	0	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,S100A1->S100_calcium_binding_protein_A1,chr1:153600402-153604513:+	SNU119_OVARY	1	1	0.0885	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	SLC38A9--CHD6	11	4	SLC38A9	7186	chr5:54993674:-	CHD6	66593	chr20:40054793:-	ONLY_REF_SPLICE	YES	205	21	0.07	0.42	0.0811	0.0295	SLC38A9->chr5:54921673-55069022:-,solute_carrier_family_38_member_9,CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6	SNU119_OVARY	0.07	0.42	0.1106	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	CLTC--RPS6KB1	9	3	CLTC	1316	chr17:57697534:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	151	25	0.07	0.32	0.0664	0.0221	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	SNU119_OVARY	0.07	0.32	0.0885	TRUE	0	1	0	5	0	TRUE	ACH-000635
SNU119_OVARY	RAPH1--WDR12	9	1	RAPH1	1300	chr2:204399834:-	WDR12	32989	chr2:203790191:-	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0664	0.0074	RAPH1->Oncogene{Bushman},Ras_association_(RalGDS/AF-6)_and_pleckstrin_homology_domains_1,chr2:204259068-204400133:-,WDR12->WD_repeat_domain_12,chr2:203739505-203879521:-	SNU119_OVARY	0.5	1	0.0738	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	NADK--SSU72	6	11	NADK	3169	chr1:1709728:-	SSU72	25841	chr1:1479367:-	ONLY_REF_SPLICE	YES	4	449	0.81	0.04	0.0442	0.0811	NADK->NAD_kinase,chr1:1682671-1711896:-,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SNU119_OVARY	0.04	0.81	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	DDX23--RP11-474C8.4	8	0	DDX23	1759	chr12:49245867:-	RP11-474C8.4	19215	chr12:48563384:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0	DDX23->DEAD-box_helicase_23,chr12:49223547-49246625:-,RP11-474C8.4->chr12:48562630-48563442:-	SNU119_OVARY	1	1	0.059	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	GPRIN1--SNCB	8	0	GPRIN1	1135	chr5:176037000:-	SNCB	12572	chr5:176048304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.059	0	LOCAL_REARRANGEMENT:-:[9951],GPRIN1->G_protein_regulated_inducer_of_neurite_outgrowth_1,chr5:176022803-176037134:-,SNCB->chr5:176047085-176057530:-,synuclein_beta	SNU119_OVARY	1	1	0.059	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	SUGP2--UPF1	1	28	SUGP2	14707	chr19:19109733:-	UPF1	25447	chr19:18956789:+	ONLY_REF_SPLICE	NO	102	2	0.22	0.94	0.0074	0.2064	SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-,UPF1->UPF1,_RNA_helicase_and_ATPase,chr19:18942747-18979045:+	SNU119_OVARY	0.22	0.94	0.2138	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ATP2B1--RP11-114H23.1	7	0	ATP2B1	3138	chr12:90049456:-	RP11-114H23.1	36154	chr12:76025094:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	ATP2B1->ATPase_plasma_membrane_Ca2+_transporting_1,chr12:89981828-90103077:-,RP11-114H23.1->chr12:75956982-76377795:-	SNU119_OVARY	1	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MLLT6--GPSM2	3	16	MLLT6	1200	chr17:36861994:+	GPSM2	39544	chr1:109465039:+	ONLY_REF_SPLICE	YES	37	477	0.34	0.04	0.0221	0.118	MLLT6->Oncogene{Bushman},chr17:36861795-36886056:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_6,GPSM2->G-protein_signaling_modulator_2,chr1:109417972-109477167:+	SNU119_OVARY	0.04	0.34	0.1401	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	FMN1--RP11-380D11.2	6	3	FMN1	16745	chr15:33300215:-	RP11-380D11.2	48658	chr15:41902398:-	ONLY_REF_SPLICE	YES	13	0	0.41	1	0.0442	0.0221	FMN1->chr15:33057747-33486897:-,formin_1,RP11-380D11.2->chr15:41901664-41904925:-	SNU119_OVARY	0.41	1	0.0663	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	INTS4--TENM4	6	2	INTS4	11304	chr11:77666988:-	TENM4	79624	chr11:78387432:-	ONLY_REF_SPLICE	YES	67	0	0.11	1	0.0442	0.0147	INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	SNU119_OVARY	0.11	1	0.0589	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	KIAA0753--SUPT7L	3	12	KIAA0753	9795	chr17:6524108:-	SUPT7L	29082	chr2:27884255:-	ONLY_REF_SPLICE	YES	18	54	0.45	0.22	0.0221	0.0885	KIAA0753->KIAA0753,chr17:6481468-6544247:-,SUPT7L->SPT7-like_STAGA_complex_gamma_subunit,chr2:27873679-27886676:-	SNU119_OVARY	0.22	0.45	0.1106	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ABCD3--RP11-148B18.3	5	2	ABCD3	12453	chr1:94946162:+	RP11-148B18.3	30348	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	75	0	0.09	1	0.0369	0.0147	LOCAL_REARRANGEMENT:+:[83529],ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+,RP11-148B18.3->chr1:94798823-94800404:+	SNU119_OVARY	0.09	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	GPD2--AC093375.1	3	8	GPD2	13972	chr2:157414094:+	AC093375.1	29345	chr2:156881119:-	INCL_NON_REF_SPLICE	YES	130	0	0.08	1	0.0221	0.059	GPD2->chr2:157291802-157470247:+,glycerol-3-phosphate_dehydrogenase_2,AC093375.1->chr2:156868129-156881125:-	SNU119_OVARY	0.08	1	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	PTPRK--CTD-2349B8.1	4	3	PTPRK	5969	chr6:128718711:-	CTD-2349B8.1	55142	chr16:19131429:+	ONLY_REF_SPLICE	YES	48	0	0.13	1	0.0295	0.0221	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,CTD-2349B8.1->chr16:19125324-19184900:+	SNU119_OVARY	0.13	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	GCSH--CDYL2	4	2	GCSH	3844	chr16:81121206:-	CDYL2	20849	chr16:80646733:-	ONLY_REF_SPLICE	YES	94	4	0.06	0.6	0.0295	0.0147	GCSH->chr16:81115566-81130008:-,glycine_cleavage_system_protein_H,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	SNU119_OVARY	0.06	0.6	0.0442	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	GPD2--AC093375.1	3	6	GPD2	13972	chr2:157414094:+	AC093375.1	29376	chr2:156881088:-	ONLY_REF_SPLICE	YES	130	0	0.06	1	0.0221	0.0442	GPD2->chr2:157291802-157470247:+,glycerol-3-phosphate_dehydrogenase_2,AC093375.1->chr2:156868129-156881125:-	SNU119_OVARY	0.06	1	0.0663	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ITGB3--MYL4	4	2	ITGB3	1095	chr17:45331306:+	MYL4	26634	chr17:45286755:+	ONLY_REF_SPLICE	YES	0	2	1	0.75	0.0295	0.0147	LOCAL_INVERSION:+,chr17:+:[30167],ITGB3->chr17:45331212-45421658:+,chr17:45331263-45421658:+,integrin_subunit_beta_3,MYL4->chr17:45277812-45301045:+,myosin_light_chain_4	SNU119_OVARY	0.75	1	0.0442	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	PTPRK--CTD-2349B8.1	4	1	PTPRK	5969	chr6:128718711:-	CTD-2349B8.1	59135	chr16:19184752:+	ONLY_REF_SPLICE	YES	48	0	0.09	1	0.0295	0.0074	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,CTD-2349B8.1->chr16:19125324-19184900:+	SNU119_OVARY	0.09	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	CBFB--CES2	4	0	CBFB	5896	chr16:67116211:+	CES2	20110	chr16:66976008:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:+:[84020],CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,CES2->carboxylesterase_2,chr16:66968347-66978999:+	SNU119_OVARY	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	TMEM245--EPB41L4B	4	0	TMEM245	12862	chr9:111822634:-	EPB41L4B	31450	chr9:112042201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:-:[52030],TMEM245->chr9:111777432-111882225:-,transmembrane_protein_245,EPB41L4B->chr9:111934255-112083244:-,erythrocyte_membrane_protein_band_4.1_like_4B	SNU119_OVARY	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	AL589743.1--RP11-536C10.17	3	2	AL589743.1	9393	chr14:19680685:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	224	0	0.02	1	0.0221	0.0147	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	SNU119_OVARY	0.02	1	0.0368	TRUE	0	8	0	6	8	TRUE	ACH-000635
SNU119_OVARY	GPD2--AC093375.1	3	2	GPD2	13972	chr2:157414094:+	AC093375.1	30487	chr2:156879329:-	ONLY_REF_SPLICE	YES	130	1	0.04	0.83	0.0221	0.0147	GPD2->chr2:157291802-157470247:+,glycerol-3-phosphate_dehydrogenase_2,AC093375.1->chr2:156868129-156881125:-	SNU119_OVARY	0.04	0.83	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ITGB3--MYL4	2	6	ITGB3	2181	chr17:45351870:+	MYL4	27803	chr17:45291165:+	ONLY_REF_SPLICE	YES	23	47	0.26	0.15	0.0147	0.0442	LOCAL_INVERSION:+,chr17:+:[30167],ITGB3->chr17:45331212-45421658:+,chr17:45331263-45421658:+,integrin_subunit_beta_3,MYL4->chr17:45277812-45301045:+,myosin_light_chain_4	SNU119_OVARY	0.15	0.26	0.0589	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	AP000525.9--LA16c-60G3.6	3	1	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	51	0	0.07	1	0.0221	0.0074	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU119_OVARY	0.07	1	0.0295	TRUE	0	8	0	10	8	TRUE	ACH-000635
SNU119_OVARY	ATP2B1--RP11-114H23.2	3	1	ATP2B1	3138	chr12:90049456:-	RP11-114H23.2	31319	chr12:76088755:-	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0221	0.0074	ATP2B1->ATPase_plasma_membrane_Ca2+_transporting_1,chr12:89981828-90103077:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU119_OVARY	0.2	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ADARB1--RPTN	3	0	ADARB1	1941	chr21:46494708:+	RPTN	34229	chr1:152130385:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+,RPTN->chr1:152126071-152131704:-,repetin	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	CTB-58E17.3--GPSM2	3	0	CTB-58E17.3	1208	chr17:36862307:-	GPSM2	17349	chr1:109461235:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	CTB-58E17.3->chr17:36859733-36862514:-,GPSM2->G-protein_signaling_modulator_2,chr1:109417972-109477167:+	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MFGE8--PTMS	3	0	MFGE8	12104	chr15:89442461:-	PTMS	19453	chr12:6879787:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0221	0	MFGE8->chr15:89441916-89456642:-,milk_fat_globule-EGF_factor_8_protein,PTMS->chr12:6874682-6880116:+,parathymosin	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	NOD1--SKAP2	3	0	NOD1	1179	chr7:30518222:-	SKAP2	25937	chr7:26933592:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	NOD1->Oncogene{Bushman},chr7:30464143-30518400:-,nucleotide_binding_oligomerization_domain_containing_1,SKAP2->chr7:26706681-27034858:-,src_kinase_associated_phosphoprotein_2	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	RP11-89K10.1--PCAT1	3	0	RP11-89K10.1	1057	chr8:127570176:+	PCAT1	14438	chr8:127889917:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	RP11-89K10.1->chr8:127570120-127725660:+,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	SNU119_OVARY	1	1	0.0221	TRUE	0	1	0	1	1	TRUE	ACH-000635
SNU119_OVARY	RP13-188A5.1--KLF8	3	0	RP13-188A5.1	2795	chrX:56041394:+	KLF8	9003	chrX:56291613:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	SNU119_OVARY	1	1	0.0221	TRUE	0	1	0	1	1	TRUE	ACH-000635
SNU119_OVARY	SMUG1--PAXIP1	3	0	SMUG1	9360	chr12:54559158:-	PAXIP1	16995	chr7:154790494:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SMUG1->chr12:54558529-54582778:-,single-strand-selective_monofunctional_uracil-DNA_glycosylase_1,PAXIP1->PAX_interacting_protein_1,chr7:154735397-154794794:-	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	SREBF2--L3MBTL2	3	0	SREBF2	1254	chr22:42229362:+	L3MBTL2	38217	chr22:41615423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx_v2:{count=1;pct=0.01%;dist=Uterus=1},SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	WDHD1--RP11-112J1.2	3	0	WDHD1	1395	chr14:55493429:-	RP11-112J1.2	36065	chr14:59415031:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-,RP11-112J1.2->chr14:59294952-59484046:+	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	AC009961.3--PLA2R1	2	3	AC009961.3	2693	chr2:160567228:-	PLA2R1	23752	chr2:160840584:-	ONLY_REF_SPLICE	YES	3	8	0.62	0.38	0.0147	0.0221	AC009961.3->chr2:160527219-160568946:-,PLA2R1->chr2:160788519-160919121:-,phospholipase_A2_receptor_1	SNU119_OVARY	0.38	0.62	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	CBFB--CES2	2	0	CBFB	5927	chr16:67116242:+	CES2	20653	chr16:66976551:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	LOCAL_REARRANGEMENT:+:[84020],CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,CES2->carboxylesterase_2,chr16:66968347-66978999:+	SNU119_OVARY	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	GCSH--CDYL2	2	0	GCSH	1273	chr16:81129736:-	CDYL2	20849	chr16:80646733:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	GCSH->chr16:81115566-81130008:-,glycine_cleavage_system_protein_H,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	SNU119_OVARY	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	LIMCH1--UCHL1	2	0	LIMCH1	2330	chr4:41362953:+	UCHL1	57948	chr4:41266120:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[91152],LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1	SNU119_OVARY	1	1	0.0147	TRUE	0	1	0	1	1	TRUE	ACH-000635
SNU119_OVARY	NOD1--SKAP2	2	0	NOD1	1179	chr7:30518222:-	SKAP2	30793	chr7:26894509:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	NOD1->Oncogene{Bushman},chr7:30464143-30518400:-,nucleotide_binding_oligomerization_domain_containing_1,SKAP2->chr7:26706681-27034858:-,src_kinase_associated_phosphoprotein_2	SNU119_OVARY	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	PHGDH--RTN3	2	0	PHGDH	9819	chr1:120269725:+	RTN3	33485	chr11:63520541:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	PHGDH->chr1:120202421-120286838:+,phosphoglycerate_dehydrogenase,RTN3->chr11:63448918-63527363:+,reticulon_3	SNU119_OVARY	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	PPP1CB--RBKS	2	0	PPP1CB	1537	chr2:28975042:+	RBKS	24201	chr2:28069971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta,RBKS->chr2:28004231-28113965:-,ribokinase	SNU119_OVARY	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	SUPT16H--CHD8	2	0	SUPT16H	1405	chr14:21852021:-	CHD8	49786	chr14:21864051:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	LOCAL_REARRANGEMENT:-:[928],SUPT16H->SPT16_homolog,_facilitates_chromatin_remodeling_subunit,chr14:21819631-21852425:-,CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8	SNU119_OVARY	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	BCORL1--ZNF280C	1	1	BCORL1	14442	chrX:129162836:+	ZNF280C	28628	chrX:129380979:-	ONLY_REF_SPLICE	YES	38	9	0.05	0.18	0.0074	0.0074	BCORL1->ArcherDX_panel,BCL6_corepressor-like_1,FoundationOne_panel,chrX:129115083-129192058:+,ZNF280C->chrX:129336685-129402873:-,zinc_finger_protein_280C	SNU119_OVARY	0.05	0.18	0.0148	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	PIGC--DNM3OS	1	1	PIGC	5815	chr1:172368959:-	DNM3OS	18724	chr1:172113577:-	ONLY_REF_SPLICE	YES	28	0	0.07	1	0.0074	0.0074	PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	SNU119_OVARY	0.07	1	0.0148	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	PTPRK--CTD-2349B8.1	1	1	PTPRK	5969	chr6:128718711:-	CTD-2349B8.1	58465	chr16:19184082:+	ONLY_REF_SPLICE	YES	48	0	0.04	1	0.0074	0.0074	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,CTD-2349B8.1->chr16:19125324-19184900:+	SNU119_OVARY	0.04	1	0.0148	TRUE	0	0	0	1	0	TRUE	ACH-000635
SLR23_KIDNEY	MTAP--RP11-814P5.1	113	54	MTAP	8659	chr9:21838009:+	RP11-814P5.1	24302	chr15:35069472:+	ONLY_REF_SPLICE	YES	110	0	0.6	1	1.4792	0.7069	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-814P5.1->chr15:35047285-35105124:+	SLR23_KIDNEY	0.6	1	2.1861	TRUE	0	0	0	1	0	TRUE	ACH-000246
SLR23_KIDNEY	DTL--PPP2R5A	5	5	DTL	1366	chr1:212209284:+	PPP2R5A	28627	chr1:212502477:+	ONLY_REF_SPLICE	YES	99	53	0.09	0.16	0.0655	0.0655	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	SLR23_KIDNEY	0.09	0.16	0.131	TRUE	0	0	0	3	0	TRUE	ACH-000246
SLR23_KIDNEY	MTAP--RP11-814P5.1	1	20	MTAP	7556	chr9:21818201:+	RP11-814P5.1	24302	chr15:35069472:+	ONLY_REF_SPLICE	YES	101	0	0.17	1	0.0131	0.2618	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-814P5.1->chr15:35047285-35105124:+	SLR23_KIDNEY	0.17	1	0.2749	TRUE	0	0	0	1	0	TRUE	ACH-000246
SLR23_KIDNEY	SLC35C1--CTD-2210P24.4	5	4	SLC35C1	3265	chr11:45827887:+	CTD-2210P24.4	9703	chr11:45793180:+	INCL_NON_REF_SPLICE	YES	70	0	0.11	1	0.0655	0.0524	LOCAL_REARRANGEMENT:+:[31714],SLC35C1->chr11:45825623-45834566:+,solute_carrier_family_35_member_C1,CTD-2210P24.4->chr11:45792983-45793909:+	SLR23_KIDNEY	0.11	1	0.1179	TRUE	0	0	0	1	0	TRUE	ACH-000246
SLR23_KIDNEY	LTBP2--AREL1	4	3	LTBP2	25395	chr14:74973401:-	AREL1	59978	chr14:75127643:-	ONLY_REF_SPLICE	YES	120	0	0.06	1	0.0524	0.0393	LOCAL_REARRANGEMENT:-:[40834],LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,AREL1->apoptosis_resistant_E3_ubiquitin_protein_ligase_1,chr14:75120140-75179818:-	SLR23_KIDNEY	0.06	1	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000246
SLR23_KIDNEY	CDKN2A--IFNWP2	3	3	CDKN2A	5457	chr9:21974677:-	IFNWP2	13545	chr9:21420397:+	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0393	0.0393	CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,IFNWP2->chr9:21420233-21420812:+,interferon,_omega_1_pseudogene_2	SLR23_KIDNEY	0.67	1	0.0786	TRUE	0	0	0	1	0	TRUE	ACH-000246
SLR23_KIDNEY	LTBP2--AREL1	3	3	LTBP2	26045	chr14:74972751:-	AREL1	59978	chr14:75127643:-	ONLY_REF_SPLICE	YES	91	0	0.06	1	0.0393	0.0393	LOCAL_REARRANGEMENT:-:[40834],LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,AREL1->apoptosis_resistant_E3_ubiquitin_protein_ligase_1,chr14:75120140-75179818:-	SLR23_KIDNEY	0.06	1	0.0786	TRUE	0	0	0	1	0	TRUE	ACH-000246
SLR23_KIDNEY	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	SLR23_KIDNEY	1	1	0.0262	TRUE	0	0	0	10	0	TRUE	ACH-000246
SLR23_KIDNEY	RAB7A--VCP	2	0	RAB7A	6199	chr3:128526514:+	VCP	22285	chr9:35059798:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,VCP->chr9:35056061-35073246:-,valosin_containing_protein	SLR23_KIDNEY	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000246
HS895T_FIBROBLAST	ADIRF-AS1--LGALS1	8	1	ADIRF-AS1	3782	chr10:88728287:-	LGALS1	10007	chr22:38071654:+	INCL_NON_REF_SPLICE	YES	34	0	0.21	1	0.0944	0.0118	ADIRF-AS1->ADIRF_antisense_RNA_1,chr10:88725102-88731068:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HS895T_FIBROBLAST	0.21	1	0.1062	TRUE	0	0	0	5	0	TRUE	ACH-000043
HS895T_FIBROBLAST	FGF5--LINC01088	5	0	FGF5	3989	chr4:81196166:+	LINC01088	32219	chr4:80229427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.059	0	FGF5->Oncogene{Bushman},chr4:81187753-81257834:+,fibroblast_growth_factor_5,LINC01088->chr4:79892902-80229952:+,long_intergenic_non-protein_coding_RNA_1088	HS895T_FIBROBLAST	1	1	0.059	TRUE	0	0	0	1	0	TRUE	ACH-000043
HS895T_FIBROBLAST	IGFBP4--S100A6	4	0	IGFBP4	3668	chr17:38610269:+	S100A6	9247	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HS895T_FIBROBLAST	1	1	0.0472	TRUE	0	0	0	4	0	TRUE	ACH-000043
HS895T_FIBROBLAST	GLTP--EMC4	2	0	GLTP	3433	chr12:110295331:-	EMC4	13811	chr15:34520630:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GLTP->chr12:110288748-110318293:-,glycolipid_transfer_protein,EMC4->ER_membrane_protein_complex_subunit_4,chr15:34517200-34522357:+	HS895T_FIBROBLAST	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000043
HS895T_FIBROBLAST	RP11-466I1.1--CTD-3012A18.1	1	1	RP11-466I1.1	2424	chr11:29233312:+	CTD-3012A18.1	8905	chr11:29573907:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0118	0.0118	RP11-466I1.1->chr11:29181503-29288281:+,CTD-3012A18.1->chr11:29540623-29574186:+	HS895T_FIBROBLAST	1	1	0.0236	TRUE	0	2	0	4	2	TRUE	ACH-000043
LCLC103H_LUNG	ELFN2--NF2	61	23	ELFN2	4988	chr22:37813808:-	NF2	36217	chr22:30090741:+	ONLY_REF_SPLICE	YES	10	5	0.89	0.94	0.9548	0.36	ELFN2->chr22:37764000-37823505:-,extracellular_leucine-rich_repeat_and_fibronectin_type_III_domain_containing_2,NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin)	LCLC103H_LUNG	0.89	0.94	1.3148	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	RABL6--CDC16	43	45	RABL6	11743	chr9:139726822:+	CDC16	26059	chr13:115004465:+	ONLY_REF_SPLICE	YES	259	88	0.25	0.5	0.6731	0.7044	RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	LCLC103H_LUNG	0.25	0.5	1.3775	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	ATG16L1--INPP5D	36	23	ATG16L1	15194	chr2:234189821:+	INPP5D	39784	chr2:234070370:+	ONLY_REF_SPLICE	YES	50	0	0.54	1	0.5635	0.36	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[2148],ATG16L1->autophagy_related_16_like_1,chr2:234118697-234204320:+,INPP5D->chr2:233924677-234116549:+,inositol_polyphosphate-5-phosphatase_D	LCLC103H_LUNG	0.54	1	0.9235	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	CLK1--TRAK2	33	26	CLK1	3224	chr2:201725961:-	TRAK2	30368	chr2:202248939:-	ONLY_REF_SPLICE	YES	103	38	0.36	0.61	0.5165	0.407	CLK1->CDC_like_kinase_1,chr2:201717732-201729422:-,TRAK2->chr2:202241930-202316302:-,trafficking_protein,_kinesin_binding_2	LCLC103H_LUNG	0.36	0.61	0.9235	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	PRKRIP1--CUX1	31	14	PRKRIP1	4162	chr7:102016769:+	CUX1	62126	chr7:101916637:+	ONLY_REF_SPLICE	YES	43	102	0.51	0.31	0.4852	0.2191	LOCAL_REARRANGEMENT:+:[77070],PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	LCLC103H_LUNG	0.31	0.51	0.7043	TRUE	0	0	0	3	0	TRUE	ACH-000627
LCLC103H_LUNG	SEC24A--LINC01024	26	27	SEC24A	1385	chr5:133984863:+	LINC01024	37669	chr5:139452662:-	ONLY_REF_SPLICE	YES	84	0	0.39	1	0.407	0.4226	SEC24A->SEC24_homolog_A,_COPII_coat_complex_component,chr5:133984479-134063513:+,LINC01024->chr5:139452442-139488215:-,long_intergenic_non-protein_coding_RNA_1024	LCLC103H_LUNG	0.39	1	0.8296	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	JAK2--PTPRD	30	5	JAK2	3241	chr9:5022213:+	PTPRD	40608	chr9:9183363:-	ONLY_REF_SPLICE	YES	13	0	0.73	1	0.4696	0.0783	JAK2->ArcherDX_panel,FoundationOne_panel,Janus_kinase_2,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:4985033-5128183:+,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	LCLC103H_LUNG	0.73	1	0.5479	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	SEC24A--LINC01024	19	27	SEC24A	1385	chr5:133984863:+	LINC01024	37673	chr5:139452658:-	INCL_NON_REF_SPLICE	YES	84	0	0.35	1	0.2974	0.4226	SEC24A->SEC24_homolog_A,_COPII_coat_complex_component,chr5:133984479-134063513:+,LINC01024->chr5:139452442-139488215:-,long_intergenic_non-protein_coding_RNA_1024	LCLC103H_LUNG	0.35	1	0.72	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	RAB31--MYOM1	20	10	RAB31	1280	chr18:9708441:+	MYOM1	23055	chr18:3219876:-	INCL_NON_REF_SPLICE	YES	272	0	0.1	1	0.3131	0.1565	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,MYOM1->chr18:3066805-3220106:-,myomesin_1	LCLC103H_LUNG	0.1	1	0.4696	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	P4HA1--SACM1L	20	2	P4HA1	1209	chr10:74856524:-	SACM1L	36652	chr3:45772793:+	ONLY_REF_SPLICE	YES	5	12	0.81	0.65	0.3131	0.0313	P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1,SACM1L->SAC1_suppressor_of_actin_mutations_1-like_(yeast),chr3:45730548-45786916:+	LCLC103H_LUNG	0.65	0.81	0.3444	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	NR6A1--GOLGA1	8	17	NR6A1	2333	chr9:127495587:-	GOLGA1	33415	chr9:127674305:-	ONLY_REF_SPLICE	YES	2	69	0.93	0.27	0.1252	0.2661	NR6A1->chr9:127279554-127533589:-,nuclear_receptor_subfamily_6_group_A_member_1,GOLGA1->chr9:127640646-127710771:-,golgin_A1	LCLC103H_LUNG	0.27	0.93	0.3913	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	NAA25--HECTD4	8	3	NAA25	24259	chr12:112478285:-	HECTD4	48828	chr12:112707653:-	ONLY_REF_SPLICE	YES	40	15	0.22	0.42	0.1252	0.047	LOCAL_REARRANGEMENT:-:[51166],NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-	LCLC103H_LUNG	0.22	0.42	0.1722	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	IAH1--ASAP2	8	1	IAH1	11069	chr2:9628521:+	ASAP2	32415	chr2:9508554:+	ONLY_REF_SPLICE	YES	23	69	0.28	0.12	0.1252	0.0157	LOCAL_REARRANGEMENT:+:[67975],IAH1->chr2:9613787-9636672:+,isoamyl_acetate-hydrolyzing_esterase_1_homolog,ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+	LCLC103H_LUNG	0.12	0.28	0.1409	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	OSBPL2--CDH4	8	1	OSBPL2	3384	chr20:60835181:+	CDH4	40885	chr20:60511795:+	ONLY_REF_SPLICE	YES	45	0	0.17	1	0.1252	0.0157	OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,CDH4->cadherin_4,chr20:59827482-60515673:+	LCLC103H_LUNG	0.17	1	0.1409	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	PRKRIP1--CUX1	4	16	PRKRIP1	5723	chr7:102036984:+	CUX1	62126	chr7:101916637:+	ONLY_REF_SPLICE	YES	59	102	0.25	0.16	0.0626	0.2504	LOCAL_REARRANGEMENT:+:[77070],PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	LCLC103H_LUNG	0.16	0.25	0.313	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	TRIQK--RP11-1084E5.1	7	3	TRIQK	11265	chr8:93929157:-	RP11-1084E5.1	26866	chr8:109907364:-	ONLY_REF_SPLICE	YES	27	0	0.27	1	0.1096	0.047	TRIQK->chr8:93895758-94029901:-,triple_QxxK/R_motif_containing,RP11-1084E5.1->chr8:109907258-110075646:-	LCLC103H_LUNG	0.27	1	0.1566	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	SEC24A--NRG2	4	4	SEC24A	1385	chr5:133984863:+	NRG2	31258	chr5:139422721:-	INCL_NON_REF_SPLICE	YES	84	1	0.09	0.89	0.0626	0.0626	SEC24A->SEC24_homolog_A,_COPII_coat_complex_component,chr5:133984479-134063513:+,NRG2->chr5:139226364-139422884:-,neuregulin_2	LCLC103H_LUNG	0.09	0.89	0.1252	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	EPB41L1--RP5-1121H13.4	4	3	EPB41L1	2310	chr20:34680735:+	RP5-1121H13.4	40096	chr20:40619786:+	INCL_NON_REF_SPLICE	YES	13	0	0.35	1	0.0626	0.047	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP5-1121H13.4->chr20:40619780-40692609:+	LCLC103H_LUNG	0.35	1	0.1096	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	TSNARE1--MGLL	4	3	TSNARE1	8273	chr8:143412262:-	MGLL	30467	chr3:127500738:-	ONLY_REF_SPLICE	YES	23	150	0.23	0.04	0.0626	0.047	{Klijn_CCL:Lung=1},TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1,MGLL->chr3:127407909-127542051:-,monoglyceride_lipase	LCLC103H_LUNG	0.04	0.23	0.1096	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	LINC00511--SLC39A11	4	2	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	47	63	0.11	0.09	0.0626	0.0313	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	LCLC103H_LUNG	0.09	0.11	0.0939	TRUE	0	5	0	7	4	TRUE	ACH-000627
LCLC103H_LUNG	NR6A1--GOLGA1	1	14	NR6A1	1291	chr9:127533299:-	GOLGA1	33415	chr9:127674305:-	ONLY_REF_SPLICE	YES	2	69	0.88	0.18	0.0157	0.2191	NR6A1->chr9:127279554-127533589:-,nuclear_receptor_subfamily_6_group_A_member_1,GOLGA1->chr9:127640646-127710771:-,golgin_A1	LCLC103H_LUNG	0.18	0.88	0.2348	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	RSPRY1--NLRC5	4	2	RSPRY1	6275	chr16:57243099:+	NLRC5	29090	chr16:57050986:+	ONLY_REF_SPLICE	YES	61	1	0.09	0.86	0.0626	0.0313	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,NLRC5->NLR_family,_CARD_domain_containing_5,chr16:57023397-57117443:+	LCLC103H_LUNG	0.09	0.86	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	SCMH1--MYH11	3	3	SCMH1	2226	chr1:41651793:-	MYH11	27695	chr16:15932126:-	ONLY_REF_SPLICE	YES	26	0	0.19	1	0.047	0.047	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	LCLC103H_LUNG	0.19	1	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	BIK--CELSR1	3	0	BIK	1056	chr22:43506809:+	CELSR1	18778	chr22:46832186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.047	0	BIK->BCL2_interacting_killer,chr22:43506754-43525718:+,CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-	LCLC103H_LUNG	1	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	ELFN2--NF2	1	7	ELFN2	1173	chr22:37823333:-	NF2	36217	chr22:30090741:+	ONLY_REF_SPLICE	YES	11	5	0.42	0.62	0.0157	0.1096	ELFN2->chr22:37764000-37823505:-,extracellular_leucine-rich_repeat_and_fibronectin_type_III_domain_containing_2,NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin)	LCLC103H_LUNG	0.42	0.62	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	E2F3--RP11-239H6.2	2	1	E2F3	2489	chr6:20404063:+	RP11-239H6.2	17966	chr6:20317782:+	ONLY_REF_SPLICE	YES	12	0	0.2	1	0.0313	0.0157	LOCAL_REARRANGEMENT:+:[84428],E2F3->E2F_transcription_factor_3,Oncogene{Bushman},chr6:20402398-20493941:+,RP11-239H6.2->chr6:20212318-20317970:+	LCLC103H_LUNG	0.2	1	0.047	TRUE	0	1	0	1	1	TRUE	ACH-000627
LCLC103H_LUNG	SCMH1--MYH11	2	1	SCMH1	1096	chr1:41707731:-	MYH11	27695	chr16:15932126:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0313	0.0157	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	LCLC103H_LUNG	0.5	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	UTS2--RP11-431K24.4	2	1	UTS2	1612	chr1:7912961:-	RP11-431K24.4	11960	chr1:8278593:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0313	0.0157	UTS2->chr1:7903143-7913572:-,urotensin_2,RP11-431K24.4->chr1:8278250-8280589:-	LCLC103H_LUNG	0.5	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	BIK--CECR2	2	0	BIK	1056	chr22:43506809:+	CECR2	11081	chr22:17956630:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	BIK->BCL2_interacting_killer,chr22:43506754-43525718:+,CECR2->cat_eye_syndrome_chromosome_region,_candidate_2,chr22:17840837-18037850:+	LCLC103H_LUNG	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	STS--RP11-692P14.1	2	0	STS	9700	chrX:7252148:+	RP11-692P14.1	19696	chrX:7986097:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	STS->chrX:7137497-7272851:+,steroid_sulfatase_(microsomal),_isozyme_S,RP11-692P14.1->chrX:7975419-7986201:+	LCLC103H_LUNG	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	ASAP1--KB-1568E2.1	1	2	ASAP1	7774	chr8:131370263:-	KB-1568E2.1	48803	chr8:131611317:-	ONLY_REF_SPLICE	YES	68	1	0.04	0.75	0.0157	0.0313	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,KB-1568E2.1->chr8:131607545-131667958:-	LCLC103H_LUNG	0.04	0.75	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	AC104389.28--HBE1	1	1	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	NO	4	4	0.33	0.33	0.0157	0.0157	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LCLC103H_LUNG	0.33	0.33	0.0314	TRUE	0	0	0	9	0	TRUE	ACH-000627
SNU1033_LARGE_INTESTINE	EHF--TSG101	986	245	EHF	10074	chr11:34673352:+	TSG101	33738	chr11:18490765:-	ONLY_REF_SPLICE	YES	84	2	0.94	1	9.5827	2.3811	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101	SNU1033_LARGE_INTESTINE	0.94	1	11.9638	TRUE	0	0	0	2	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	AP1G1--ZNF821	145	33	AP1G1	1439	chr16:71842666:-	ZNF821	44012	chr16:71901940:-	ONLY_REF_SPLICE	YES	43	5	0.81	0.97	1.4092	0.3207	LOCAL_REARRANGEMENT:-:[50479],AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-,ZNF821->chr16:71893583-71929239:-,zinc_finger_protein_821	SNU1033_LARGE_INTESTINE	0.81	0.97	1.7299	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	IGF2BP2--TRA2B	86	44	IGF2BP2	2393	chr3:185540941:-	TRA2B	33930	chr3:185644522:-	ONLY_REF_SPLICE	YES	173	381	0.43	0.25	0.8358	0.4276	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	SNU1033_LARGE_INTESTINE	0.25	0.43	1.2634	TRUE	0	1	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	CCDC97--HNRNPUL1	82	37	CCDC97	3283	chr19:41822744:+	HNRNPUL1	15433	chr19:41774128:+	ONLY_REF_SPLICE	YES	30	224	0.8	0.35	0.7969	0.3596	LOCAL_REARRANGEMENT:+:[2591],CCDC97->chr19:41816094-41830788:+,coiled-coil_domain_containing_97,HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1	SNU1033_LARGE_INTESTINE	0.35	0.8	1.1565	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	BRD1--MAPK12	78	46	BRD1	13523	chr22:50181038:-	MAPK12	24052	chr22:50696730:-	ONLY_REF_SPLICE	YES	42	35	0.75	0.78	0.7581	0.4471	BRD1->bromodomain_containing_1,chr22:50166931-50221160:-,MAPK12->Oncogene{Bushman},chr22:50683879-50700254:-,mitogen-activated_protein_kinase_12	SNU1033_LARGE_INTESTINE	0.75	0.78	1.2052	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	EHF--TSG101	4	245	EHF	10074	chr11:34673352:+	TSG101	32276	chr11:18497227:-	INCL_NON_REF_SPLICE	YES	84	5	0.75	0.98	0.0389	2.3811	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101	SNU1033_LARGE_INTESTINE	0.75	0.98	2.42	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	EHF--TSG101	3	245	EHF	10101	chr11:34673379:+	TSG101	33738	chr11:18490765:-	INCL_NON_REF_SPLICE	YES	93	2	0.73	0.99	0.0292	2.3811	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101	SNU1033_LARGE_INTESTINE	0.73	0.99	2.4103	TRUE	0	0	0	2	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	CCDC57--CSNK1D	43	22	CCDC57	16219	chr17:80129577:-	CSNK1D	47164	chr17:80213453:-	ONLY_REF_SPLICE	YES	6	110	0.92	0.37	0.4179	0.2138	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[26193],CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	SNU1033_LARGE_INTESTINE	0.37	0.92	0.6317	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	EHF--TSG101	9	149	EHF	9879	chr11:34673157:+	TSG101	33738	chr11:18490765:-	ONLY_REF_SPLICE	YES	103	2	0.61	0.99	0.0875	1.4481	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101	SNU1033_LARGE_INTESTINE	0.61	0.99	1.5356	TRUE	0	0	0	2	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	EHF--TSG101	4	149	EHF	9875	chr11:34673153:+	TSG101	33738	chr11:18490765:-	INCL_NON_REF_SPLICE	YES	100	2	0.6	0.99	0.0389	1.4481	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101	SNU1033_LARGE_INTESTINE	0.6	0.99	1.487	TRUE	0	0	0	2	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	AP1G1--ZNF821	30	17	AP1G1	1439	chr16:71842666:-	ZNF821	45157	chr16:71898951:-	ONLY_REF_SPLICE	YES	43	20	0.52	0.7	0.2916	0.1652	LOCAL_REARRANGEMENT:-:[50479],AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-,ZNF821->chr16:71893583-71929239:-,zinc_finger_protein_821	SNU1033_LARGE_INTESTINE	0.52	0.7	0.4568	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	ACP6--RPRD2	26	9	ACP6	5538	chr1:147126309:-	RPRD2	35154	chr1:150443037:+	ONLY_REF_SPLICE	YES	83	46	0.3	0.43	0.2527	0.0875	ACP6->acid_phosphatase_6,_lysophosphatidic,chr1:147101453-147142618:-,RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2	SNU1033_LARGE_INTESTINE	0.3	0.43	0.3402	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	IGF2BP2--TRA2B	16	48	IGF2BP2	3513	chr3:185538800:-	TRA2B	33930	chr3:185644522:-	ONLY_REF_SPLICE	YES	195	381	0.25	0.14	0.1555	0.4665	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	SNU1033_LARGE_INTESTINE	0.14	0.25	0.622	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	RUSC2--ATP8B5P	27	2	RUSC2	1046	chr9:35490169:+	ATP8B5P	30246	chr9:35471017:+	ONLY_REF_SPLICE	YES	3	0	0.91	1	0.2624	0.0194	LOCAL_REARRANGEMENT:+:[7098],RUSC2->RUN_and_SH3_domain_containing_2,chr9:35490124-35561895:+,ATP8B5P->ATPase_phospholipid_transporting_8B5,_pseudogene,chr9:35406752-35483026:+	SNU1033_LARGE_INTESTINE	0.91	1	0.2818	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	FAM157A--LMLN	19	2	FAM157A	4742	chr3:197884540:+	LMLN	32582	chr3:197746124:+	ONLY_REF_SPLICE	YES	16	8	0.57	0.72	0.1847	0.0194	FAM157A->chr3:197879237-197925886:+,family_with_sequence_similarity_157_member_A,LMLN->chr3:197687071-197770591:+,leishmanolysin_like_peptidase	SNU1033_LARGE_INTESTINE	0.57	0.72	0.2041	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	GPATCH1--RHPN2	12	8	GPATCH1	2522	chr19:33579174:+	RHPN2	28546	chr19:33517538:-	ONLY_REF_SPLICE	YES	22	133	0.48	0.13	0.1166	0.0778	LOCAL_INVERSION:+:-:[15992],GPATCH1->G-patch_domain_containing_1,chr19:33571786-33621448:+,RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2	SNU1033_LARGE_INTESTINE	0.13	0.48	0.1944	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	IGF2BP2--TRA2B	4	27	IGF2BP2	1274	chr3:185542571:-	TRA2B	33930	chr3:185644522:-	ONLY_REF_SPLICE	YES	179	381	0.15	0.08	0.0389	0.2624	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	SNU1033_LARGE_INTESTINE	0.08	0.15	0.3013	TRUE	0	0	0	2	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	FAM208B--AKR1C7P	8	2	FAM208B	1338	chr10:5727138:+	AKR1C7P	35755	chr10:5327975:-	ONLY_REF_SPLICE	YES	7	0	0.59	1	0.0778	0.0194	FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,AKR1C7P->aldo-keto_reductase_family_1,_member_C7,_pseudogene,chr10:5317136-5330433:-	SNU1033_LARGE_INTESTINE	0.59	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	TRAPPC9--PTK2	7	6	TRAPPC9	5810	chr8:141445211:-	PTK2	114084	chr8:141711121:-	ONLY_REF_SPLICE	YES	17	100	0.43	0.12	0.068	0.0583	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	SNU1033_LARGE_INTESTINE	0.12	0.43	0.1263	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	TRAPPC9--PTK2	6	7	TRAPPC9	6837	chr8:141436714:-	PTK2	114084	chr8:141711121:-	ONLY_REF_SPLICE	YES	19	100	0.41	0.12	0.0583	0.068	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	SNU1033_LARGE_INTESTINE	0.12	0.41	0.1263	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	AP1G1--ZNF821	6	5	AP1G1	1439	chr16:71842666:-	ZNF821	45963	chr16:71898145:-	ONLY_REF_SPLICE	YES	43	33	0.2	0.25	0.0583	0.0486	LOCAL_REARRANGEMENT:-:[50479],AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-,ZNF821->chr16:71893583-71929239:-,zinc_finger_protein_821	SNU1033_LARGE_INTESTINE	0.2	0.25	0.1069	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MAP3K4--RP3-428L16.1	6	3	MAP3K4	25008	chr6:161523811:+	RP3-428L16.1	40391	chr6:161390750:+	ONLY_REF_SPLICE	YES	20	0	0.31	1	0.0583	0.0292	LOCAL_REARRANGEMENT:+:[21956],MAP3K4->chr6:161412759-161538417:+,mitogen-activated_protein_kinase_kinase_kinase_4,RP3-428L16.1->chr6:161352112-161390803:+	SNU1033_LARGE_INTESTINE	0.31	1	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	BRD1--MAPK12	4	8	BRD1	12025	chr22:50187682:-	MAPK12	24052	chr22:50696730:-	ONLY_REF_SPLICE	YES	53	35	0.18	0.26	0.0389	0.0778	BRD1->bromodomain_containing_1,chr22:50166931-50221160:-,MAPK12->Oncogene{Bushman},chr22:50683879-50700254:-,mitogen-activated_protein_kinase_12	SNU1033_LARGE_INTESTINE	0.18	0.26	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	CCAT1--CASC8	6	0	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0583	0	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1033_LARGE_INTESTINE	1	1	0.0583	TRUE	0	7	0	14	6	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	TSG101--EHF	5	4	TSG101	13995	chr11:18502032:-	EHF	31033	chr11:34678455:+	ONLY_REF_SPLICE	YES	33	84	0.21	0.1	0.0486	0.0389	TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101,EHF->ETS_homologous_factor,chr11:34642640-34682604:+	SNU1033_LARGE_INTESTINE	0.1	0.21	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	DSE--NT5DC1	5	3	DSE	4234	chr6:116600894:+	NT5DC1	36779	chr6:116558129:+	ONLY_REF_SPLICE	YES	1	66	0.89	0.11	0.0486	0.0292	LOCAL_REARRANGEMENT:+:[4676],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	SNU1033_LARGE_INTESTINE	0.11	0.89	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	GPATCH1--RHPN2	5	3	GPATCH1	2448	chr19:33579100:+	RHPN2	28546	chr19:33517538:-	INCL_NON_REF_SPLICE	YES	12	133	0.4	0.06	0.0486	0.0292	LOCAL_INVERSION:+:-:[15992],GPATCH1->G-patch_domain_containing_1,chr19:33571786-33621448:+,RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2	SNU1033_LARGE_INTESTINE	0.06	0.4	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MYO7A--B3GNT6	5	2	MYO7A	5637	chr11:76858996:+	B3GNT6	53300	chr11:76750596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0.0194	LOCAL_REARRANGEMENT:+:[86214],MYO7A->chr11:76839310-76926284:+,myosin_VIIA,B3GNT6->Oncogene{Bushman},UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_6,chr11:76745385-76753096:+	SNU1033_LARGE_INTESTINE	1	1	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	CTD-2555C10.3--TECPR2	5	0	CTD-2555C10.3	1323	chr14:103011913:+	TECPR2	25094	chr14:102916897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	LOCAL_REARRANGEMENT:+:[42773],CTD-2555C10.3->chr14:103011591-103022163:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	SNU1033_LARGE_INTESTINE	1	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	HS6ST3--LINC00452	4	2	HS6ST3	1731	chr13:96743823:+	LINC00452	11458	chr13:114601499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0.0194	HS6ST3->chr13:96743093-97485671:+,heparan_sulfate_6-O-sulfotransferase_3,LINC00452->chr13:114586640-114626485:+,long_intergenic_non-protein_coding_RNA_452	SNU1033_LARGE_INTESTINE	1	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	FAM132A--CPSF3L	3	2	FAM132A	2980	chr1:1179334:-	CPSF3L	16041	chr1:1250998:-	ONLY_REF_SPLICE	YES	9	137	0.36	0.04	0.0292	0.0194	LOCAL_REARRANGEMENT:-:[64863],FAM132A->chr1:1177826-1182102:-,family_with_sequence_similarity_132_member_A,CPSF3L->chr1:1246965-1260071:-,cleavage_and_polyadenylation_specific_factor_3-like	SNU1033_LARGE_INTESTINE	0.04	0.36	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	RUSC2--ATP8B5P	3	1	RUSC2	1046	chr9:35490169:+	ATP8B5P	31331	chr9:35473725:+	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[7098],RUSC2->RUN_and_SH3_domain_containing_2,chr9:35490124-35561895:+,ATP8B5P->ATPase_phospholipid_transporting_8B5,_pseudogene,chr9:35406752-35483026:+	SNU1033_LARGE_INTESTINE	0.57	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	PLEC--ZNF623	3	0	PLEC	3358	chr8:145047571:-	ZNF623	41587	chr8:144732068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	PLEC->chr8:144989321-145050902:-,plectin,ZNF623->chr8:144718183-144735900:+,zinc_finger_protein_623	SNU1033_LARGE_INTESTINE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	DSE--NT5DC1	1	6	DSE	4763	chr6:116601423:+	NT5DC1	36779	chr6:116558129:+	ONLY_REF_SPLICE	YES	1	66	0.88	0.1	0.0097	0.0583	LOCAL_REARRANGEMENT:+:[4676],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	SNU1033_LARGE_INTESTINE	0.1	0.88	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	CTD-2555C10.3--TECPR2	2	1	CTD-2555C10.3	2486	chr14:103016845:+	TECPR2	25094	chr14:102916897:+	ONLY_REF_SPLICE	YES	1	9	0.75	0.25	0.0194	0.0097	LOCAL_REARRANGEMENT:+:[42773],CTD-2555C10.3->chr14:103011591-103022163:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	SNU1033_LARGE_INTESTINE	0.25	0.75	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	ATP5B--PTGES3	2	0	ATP5B	3612	chr12:57037187:-	PTGES3	12702	chr12:57066849:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:-:[17329],ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	BRD1--MAPK12	2	0	BRD1	8449	chr22:50197852:-	MAPK12	24052	chr22:50696730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	BRD1->bromodomain_containing_1,chr22:50166931-50221160:-,MAPK12->Oncogene{Bushman},chr22:50683879-50700254:-,mitogen-activated_protein_kinase_12	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	COL18A1--BX322557.13	2	0	COL18A1	3025	chr21:46876090:+	BX322557.13	39738	chr21:46758311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:+:[66472],COL18A1->chr21:46825052-46933634:+,collagen_type_XVIII_alpha_1,BX322557.13->chr21:46756622-46758580:+	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	DSE--NT5DC1	2	0	DSE	2645	chr6:116580130:+	NT5DC1	36779	chr6:116558129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:+:[4676],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	ELAVL1--C2orf54	2	0	ELAVL1	3505	chr19:8056528:-	C2orf54	19737	chr2:241831180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,C2orf54->chr2:241825465-241836306:-,chromosome_2_open_reading_frame_54	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	GAB2--NARS2	2	0	GAB2	1703	chr11:78128692:-	NARS2	36514	chr11:78154804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[17613],GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	2	0	2	1	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	GIGYF2--TPM3P9	2	0	GIGYF2	4148	chr2:233568199:+	TPM3P9	57673	chr19:53945049:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,TPM3P9->chr19:53935237-53947923:+,tropomyosin_3_pseudogene_9	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	OSBPL5--CD81	2	0	OSBPL5	2524	chr11:3186446:-	CD81	37949	chr11:2411642:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,CD81->CD81_molecule,chr11:2397407-2418649:+	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	RALGPS1--MVB12B	2	0	RALGPS1	1703	chr9:129677755:+	MVB12B	41006	chr9:129102787:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+,MVB12B->chr9:129089128-129269320:+,multivesicular_body_subunit_12B	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	RBM6--ZNF736	2	0	RBM6	8238	chr3:50012825:+	ZNF736	42582	chr7:63808468:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	TRA2B--RAB2A	2	0	TRA2B	1312	chr3:185655613:-	RAB2A	31078	chr8:61504417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	TSG101--EHF	1	4	TSG101	14577	chr11:18501450:-	EHF	31033	chr11:34678455:+	ONLY_REF_SPLICE	YES	3	84	0.62	0.06	0.0097	0.0389	TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101,EHF->ETS_homologous_factor,chr11:34642640-34682604:+	SNU1033_LARGE_INTESTINE	0.06	0.62	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000286
RERFLCAD2_LUNG	SRGAP1--OS9	681	117	SRGAP1	1591	chr12:64238663:+	OS9	38849	chr12:58109543:+	ONLY_REF_SPLICE	YES	1	2028	1	0.28	6.9891	1.2008	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	RERFLCAD2_LUNG	0.28	1	8.1899	TRUE	0	1	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	SRGAP1--OS9	244	169	SRGAP1	1591	chr12:64238663:+	OS9	36171	chr12:58088533:+	ONLY_REF_SPLICE	YES	1	2684	1	0.13	2.5042	1.7345	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	RERFLCAD2_LUNG	0.13	1	4.2387	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	SPINT2--YIF1B	96	37	SPINT2	2641	chr19:38755638:+	YIF1B	16141	chr19:38800283:-	ONLY_REF_SPLICE	YES	1936	54	0.06	0.71	0.9853	0.3797	LOCAL_INVERSION:+:-:[12499],SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2,YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-	RERFLCAD2_LUNG	0.06	0.71	1.365	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	SRGAP1--OS9	36	126	SRGAP1	1591	chr12:64238663:+	OS9	37201	chr12:58089563:+	ONLY_REF_SPLICE	YES	1	2612	0.99	0.06	0.3695	1.2931	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	RERFLCAD2_LUNG	0.06	0.99	1.6626	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	SRGAP1--OS9	3	126	SRGAP1	1591	chr12:64238663:+	OS9	36964	chr12:58089326:+	ONLY_REF_SPLICE	YES	1	2868	0.99	0.04	0.0308	1.2931	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	RERFLCAD2_LUNG	0.04	0.99	1.3239	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	TMLHE--CYTH3	16	2	TMLHE	2332	chrX:154842453:-	CYTH3	16935	chr7:6230162:-	ONLY_REF_SPLICE	YES	12	20	0.6	0.47	0.1642	0.0205	TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,CYTH3->chr7:6201407-6312275:-,cytohesin_3	RERFLCAD2_LUNG	0.47	0.6	0.1847	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	RP11-96H19.1--PPHLN1	13	5	RP11-96H19.1	2709	chr12:46781755:+	PPHLN1	29187	chr12:42835117:+	ONLY_REF_SPLICE	YES	2	63	0.9	0.22	0.1334	0.0513	RP11-96H19.1->chr12:46777462-46850051:+,PPHLN1->chr12:42632249-42853517:+,periphilin_1	RERFLCAD2_LUNG	0.22	0.9	0.1847	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	TMED3--RP11-720L8.1	12	2	TMED3	5522	chr15:79614493:+	RP11-720L8.1	13375	chr15:37712386:-	INCL_NON_REF_SPLICE	YES	314	0	0.04	1	0.1232	0.0205	TMED3->chr15:79603404-79704334:+,transmembrane_p24_trafficking_protein_3,RP11-720L8.1->chr15:37657228-37783009:-	RERFLCAD2_LUNG	0.04	1	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	CLTC--RPS6KB1	8	3	CLTC	15918	chr17:57746301:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	86	24	0.11	0.31	0.0821	0.0308	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	RERFLCAD2_LUNG	0.11	0.31	0.1129	TRUE	0	1	0	2	0	TRUE	ACH-000774
RERFLCAD2_LUNG	ARMC1--RP11-318M2.2	8	2	ARMC1	3528	chr8:66539451:-	RP11-318M2.2	19136	chr8:104258912:-	ONLY_REF_SPLICE	YES	93	4	0.1	0.71	0.0821	0.0205	ARMC1->armadillo_repeat_containing_1,chr8:66514694-66546442:-,RP11-318M2.2->chr8:104169218-104311000:-	RERFLCAD2_LUNG	0.1	0.71	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	WIBG--SDSL	6	1	WIBG	5643	chr12:56297171:-	SDSL	13528	chr12:113866225:+	ONLY_REF_SPLICE	YES	65	31	0.1	0.18	0.0616	0.0103	WIBG->chr12:56295197-56326402:-,SDSL->chr12:113860042-113876081:+,serine_dehydratase_like	RERFLCAD2_LUNG	0.1	0.18	0.0719	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	RP11-96H19.1--PPHLN1	2	6	RP11-96H19.1	3839	chr12:46848924:+	PPHLN1	29187	chr12:42835117:+	ONLY_REF_SPLICE	YES	1	63	0.89	0.11	0.0205	0.0616	RP11-96H19.1->chr12:46777462-46850051:+,PPHLN1->chr12:42632249-42853517:+,periphilin_1	RERFLCAD2_LUNG	0.11	0.89	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	NUDT22--DPYS	2	1	NUDT22	4631	chr11:63997043:+	DPYS	10144	chr8:105463632:-	ONLY_REF_SPLICE	YES	35	0	0.08	1	0.0205	0.0103	NUDT22->chr11:63993413-63998158:+,nudix_hydrolase_22,DPYS->chr8:105342552-105479281:-,dihydropyrimidinase	RERFLCAD2_LUNG	0.08	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	ABCC1--EREG	2	0	ABCC1	13852	chr16:16150152:+	EREG	48012	chr4:75248362:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,EREG->chr4:75230860-75254468:+,epiregulin	RERFLCAD2_LUNG	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	ADAP1--SUN1	2	0	ADAP1	9672	chr7:959605:-	SUN1	48590	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	RERFLCAD2_LUNG	1	1	0.0205	TRUE	0	4	0	9	2	TRUE	ACH-000774
RERFLCAD2_LUNG	TMEM14A--KIAA1429	2	0	TMEM14A	3325	chr6:52546712:+	KIAA1429	36934	chr8:95501088:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	TMEM14A->chr6:52535907-52551386:+,transmembrane_protein_14A,KIAA1429->KIAA1429,chr8:95499921-95565757:-	RERFLCAD2_LUNG	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000774
HCC202_BREAST	GOSR1--MBTD1	1164	432	GOSR1	10351	chr17:28819771:+	MBTD1	41636	chr17:49258055:-	ONLY_REF_SPLICE	YES	56	11	0.97	0.99	14.4203	5.3519	GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HCC202_BREAST	0.97	0.99	19.7722	TRUE	0	0	0	2	0	TRUE	ACH-000725
HCC202_BREAST	ZNF526--CXCL17	648	16	ZNF526	1117	chr19:42724539:+	CXCL17	9341	chr19:42947212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	8.0278	0.1982	ZNF526->chr19:42724423-42732353:+,zinc_finger_protein_526,CXCL17->C-X-C_motif_chemokine_ligand_17,chr19:42932440-42947200:-	HCC202_BREAST	1	1	8.226	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	TMEM104--SLC9A3R1	211	63	TMEM104	7995	chr17:72791771:+	SLC9A3R1	21097	chr17:72763075:+	ONLY_REF_SPLICE	YES	64	1442	0.81	0.16	2.614	0.7805	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[7130],TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,SLC9A3R1->Oncogene{Bushman},SLC9A3_regulator_1,chr17:72744791-72765492:+	HCC202_BREAST	0.16	0.81	3.3945	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	FBXL20--SNF8	187	89	FBXL20	2163	chr17:37557614:-	SNF8	26270	chr17:47014486:-	ONLY_REF_SPLICE	YES	9	766	0.97	0.26	2.3167	1.1026	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	HCC202_BREAST	0.26	0.97	3.4193	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MTMR1--CABIN1	183	84	MTMR1	14931	chrX:149905920:+	CABIN1	26838	chr22:24431892:+	ONLY_REF_SPLICE	YES	191	12	0.58	0.96	2.2671	1.0406	MTMR1->chrX:149861435-149933576:+,myotubularin_related_protein_1,CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+	HCC202_BREAST	0.58	0.96	3.3077	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	FBXL20--SNF8	192	18	FBXL20	1351	chr17:37558426:-	SNF8	26270	chr17:47014486:-	ONLY_REF_SPLICE	YES	5	766	0.98	0.22	2.3786	0.223	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	HCC202_BREAST	0.22	0.98	2.6016	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SPOP--SRCIN1	140	23	SPOP	1302	chr17:47755295:-	SRCIN1	37195	chr17:36709091:-	ONLY_REF_SPLICE	YES	87	55	0.65	0.75	1.7344	0.2849	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	HCC202_BREAST	0.65	0.75	2.0193	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF670--AGT	99	162	ZNF670	1218	chr1:247241896:-	AGT	17435	chr1:230850067:-	INCL_NON_REF_SPLICE	YES	26	0	0.91	1	1.2265	2.007	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,AGT->angiotensinogen,chr1:230838269-230850043:-	HCC202_BREAST	0.91	1	3.2335	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PDCD6--SDHA	113	58	PDCD6	2152	chr5:272887:+	SDHA	39802	chr5:254508:+	ONLY_REF_SPLICE	YES	592	446	0.22	0.28	1.3999	0.7185	LOCAL_REARRANGEMENT:+:[14921],PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,SDHA->ArcherDX_panel,FoundationOne_panel,chr5:218356-256815:+,succinate_dehydrogenase_complex_flavoprotein_subunit_A	HCC202_BREAST	0.22	0.28	2.1184	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	GOSR1--MBTD1	10	433	GOSR1	10364	chr17:28819784:+	MBTD1	41636	chr17:49258055:-	INCL_NON_REF_SPLICE	YES	60	11	0.88	0.98	0.1239	5.3643	GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HCC202_BREAST	0.88	0.98	5.4882	TRUE	0	0	0	2	0	TRUE	ACH-000725
HCC202_BREAST	GOSR1--MBTD1	6	433	GOSR1	10355	chr17:28819775:+	MBTD1	41636	chr17:49258055:-	INCL_NON_REF_SPLICE	YES	60	11	0.88	0.98	0.0743	5.3643	GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HCC202_BREAST	0.88	0.98	5.4386	TRUE	0	0	0	2	0	TRUE	ACH-000725
HCC202_BREAST	PPP1CB--PLB1	86	32	PPP1CB	8102	chr2:29011675:+	PLB1	67339	chr2:28851430:+	ONLY_REF_SPLICE	YES	323	2	0.27	0.98	1.0654	0.3964	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],{Klijn_CCL:Brain=1},PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta,PLB1->chr2:28680012-28866654:+,phospholipase_B1	HCC202_BREAST	0.27	0.98	1.4618	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	RP11-613M10.9--STARD3	86	27	RP11-613M10.9	8147	chr9:37899826:-	STARD3	20302	chr17:37809734:+	ONLY_REF_SPLICE	YES	0	377	1	0.23	1.0654	0.3345	RP11-613M10.9->chr9:37588410-38068684:-,STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+	HCC202_BREAST	0.23	1	1.3999	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF670--AGT	66	82	ZNF670	1218	chr1:247241896:-	AGT	18671	chr1:230846599:-	ONLY_REF_SPLICE	YES	26	30	0.85	0.83	0.8176	1.0159	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,AGT->angiotensinogen,chr1:230838269-230850043:-	HCC202_BREAST	0.83	0.85	1.8335	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	NAP1L1--RP1-34H18.1	64	26	NAP1L1	1467	chr12:76478347:-	RP1-34H18.1	25770	chr12:77965639:+	ONLY_REF_SPLICE	YES	56	0	0.62	1	0.7929	0.3221	NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1,RP1-34H18.1->chr12:77718421-77966055:+	HCC202_BREAST	0.62	1	1.115	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF670--AGT	9	162	ZNF670	1218	chr1:247241896:-	AGT	17438	chr1:230850064:-	INCL_NON_REF_SPLICE	YES	26	0	0.87	1	0.1115	2.007	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,AGT->angiotensinogen,chr1:230838269-230850043:-	HCC202_BREAST	0.87	1	2.1185	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF256--TDRD12	42	27	ZNF256	3429	chr19:58453948:-	TDRD12	9521	chr19:33222631:+	INCL_NON_REF_SPLICE	YES	49	0	0.58	1	0.5203	0.3345	ZNF256->chr19:58452201-58459043:-,zinc_finger_protein_256,TDRD12->chr19:33210659-33320483:+,tudor_domain_containing_12	HCC202_BREAST	0.58	1	0.8548	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	FBXL20--SNF8	47	1	FBXL20	1054	chr17:37558723:-	SNF8	26270	chr17:47014486:-	INCL_NON_REF_SPLICE	YES	0	766	1	0.06	0.5823	0.0124	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	HCC202_BREAST	0.06	1	0.5947	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SLC20A2--PLAT	38	14	SLC20A2	1389	chr8:42396681:-	PLAT	30269	chr8:42050729:-	ONLY_REF_SPLICE	YES	46	0	0.53	1	0.4708	0.1734	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	HCC202_BREAST	0.53	1	0.6442	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	CATSPERG--CARD8	36	9	CATSPERG	4876	chr19:38835008:+	CARD8	28131	chr19:48753104:-	ONLY_REF_SPLICE	YES	2	19	0.96	0.7	0.446	0.1115	CATSPERG->cation_channel_sperm_associated_auxiliary_subunit_gamma,chr19:38826415-38861589:+,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	HCC202_BREAST	0.7	0.96	0.5575	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SPAG9--TP53I13	35	11	SPAG9	2633	chr17:49156945:-	TP53I13	48737	chr17:27895296:+	ONLY_REF_SPLICE	YES	115	200	0.29	0.19	0.4336	0.1363	SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,TP53I13->chr17:27893070-27900175:+,tumor_protein_p53_inducible_protein_13	HCC202_BREAST	0.19	0.29	0.5699	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	NUDT3--C6orf106	33	5	NUDT3	1411	chr6:34360041:-	C6orf106	22794	chr6:34574681:-	ONLY_REF_SPLICE	YES	61	141	0.38	0.21	0.4088	0.0619	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,C6orf106->chr6:34555065-34664636:-,chromosome_6_open_reading_frame_106	HCC202_BREAST	0.21	0.38	0.4707	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	TOR4A--GRIN1	30	16	TOR4A	3859	chr9:140175059:+	GRIN1	19552	chr9:140056833:+	INCL_NON_REF_SPLICE	YES	5	12	0.9	0.79	0.3717	0.1982	TOR4A->chr9:140172201-140177093:+,torsin_family_4_member_A,GRIN1->chr9:140032842-140063207:+,glutamate_ionotropic_receptor_NMDA_type_subunit_1	HCC202_BREAST	0.79	0.9	0.5699	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF526--CXCL17	30	14	ZNF526	1117	chr19:42724539:+	CXCL17	9393	chr19:42947160:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3717	0.1734	ZNF526->chr19:42724423-42732353:+,zinc_finger_protein_526,CXCL17->C-X-C_motif_chemokine_ligand_17,chr19:42932440-42947200:-	HCC202_BREAST	1	1	0.5451	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF670--AGT	3	114	ZNF670	1218	chr1:247241896:-	AGT	17558	chr1:230849944:-	INCL_NON_REF_SPLICE	YES	26	0	0.82	1	0.0372	1.4123	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,AGT->angiotensinogen,chr1:230838269-230850043:-	HCC202_BREAST	0.82	1	1.4495	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	OSBPL8--NAP1L1	26	20	OSBPL8	3396	chr12:76930784:-	NAP1L1	42297	chr12:76462774:-	ONLY_REF_SPLICE	YES	14	331	0.77	0.12	0.3221	0.2478	OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	HCC202_BREAST	0.12	0.77	0.5699	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SPOP--SRCIN1	15	36	SPOP	6042	chr17:47714121:-	SRCIN1	37195	chr17:36709091:-	ONLY_REF_SPLICE	YES	168	55	0.23	0.48	0.1858	0.446	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	HCC202_BREAST	0.23	0.48	0.6318	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF670--AGT	18	15	ZNF670	1218	chr1:247241896:-	AGT	20530	chr1:230841946:-	ONLY_REF_SPLICE	YES	26	97	0.56	0.25	0.223	0.1858	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,AGT->angiotensinogen,chr1:230838269-230850043:-	HCC202_BREAST	0.25	0.56	0.4088	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PIK3CB--NVL	17	16	PIK3CB	15783	chr3:138423285:-	NVL	62572	chr1:224415372:-	ONLY_REF_SPLICE	YES	51	129	0.39	0.2	0.2106	0.1982	{Klijn_CCL:Breast=1},PIK3CB->ArcherDX_panel,FoundationOne_panel,chr3:138372860-138553780:-,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_beta,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	HCC202_BREAST	0.2	0.39	0.4088	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PHF8--NEBL	19	7	PHF8	12278	chrX:54037555:-	NEBL	43026	chr10:21188379:-	INCL_NON_REF_SPLICE	YES	178	57	0.13	0.31	0.2354	0.0867	PHF8->PHD_finger_protein_8,chrX:53963109-54075391:-,NEBL->chr10:21068902-21463116:-,nebulette	HCC202_BREAST	0.13	0.31	0.3221	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PCMTD1--RP11-317N12.1	18	10	PCMTD1	1246	chr8:52811490:-	RP11-317N12.1	24941	chr8:33865374:+	ONLY_REF_SPLICE	YES	70	0	0.29	1	0.223	0.1239	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	HCC202_BREAST	0.29	1	0.3469	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	GBF1--MRC2	17	8	GBF1	3423	chr10:104019873:+	MRC2	33016	chr17:60741909:+	ONLY_REF_SPLICE	YES	57	0	0.3	1	0.2106	0.0991	GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1,MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2	HCC202_BREAST	0.3	1	0.3097	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	FYCO1--HRAS	15	12	FYCO1	17756	chr3:45996741:-	HRAS	32781	chr11:534375:-	ONLY_REF_SPLICE	YES	21	12	0.56	0.69	0.1858	0.1487	{Klijn_CCL:Breast=1},FYCO1->FYVE_and_coiled-coil_domain_containing_1,chr3:45959396-46037316:-,HRAS->ArcherDX_panel,FoundationOne_panel,Harvey_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr11:532242-537287:-	HCC202_BREAST	0.56	0.69	0.3345	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PDCD6--SDHA	2	58	PDCD6	5721	chr5:304336:+	SDHA	32592	chr5:236543:+	ONLY_REF_SPLICE	YES	494	321	0.11	0.16	0.0248	0.7185	LOCAL_REARRANGEMENT:+:[14921],PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,SDHA->ArcherDX_panel,FoundationOne_panel,chr5:218356-256815:+,succinate_dehydrogenase_complex_flavoprotein_subunit_A	HCC202_BREAST	0.11	0.16	0.7433	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SPOP--SRCIN1	9	25	SPOP	2424	chr17:47753257:-	SRCIN1	37195	chr17:36709091:-	ONLY_REF_SPLICE	YES	149	55	0.19	0.38	0.1115	0.3097	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	HCC202_BREAST	0.19	0.38	0.4212	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SPOP--SRCIN1	6	27	SPOP	3476	chr17:47745389:-	SRCIN1	37195	chr17:36709091:-	ONLY_REF_SPLICE	YES	154	55	0.18	0.38	0.0743	0.3345	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	HCC202_BREAST	0.18	0.38	0.4088	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	HECTD4--TMEM116	11	6	HECTD4	12575	chr12:112711459:-	TMEM116	89787	chr12:112381173:-	ONLY_REF_SPLICE	YES	7	43	0.71	0.28	0.1363	0.0743	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116	HCC202_BREAST	0.28	0.71	0.2106	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	NOL12--GGA1	12	0	NOL12	22656	chr22:38147835:+	GGA1	54712	chr22:38026910:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1487	0	LOCAL_REARRANGEMENT:+:[48109],NOL12->chr22:38077680-38170137:+,nucleolar_protein_12,GGA1->Oncogene{Bushman},chr22:38004481-38029571:+,golgi-associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_1	HCC202_BREAST	1	1	0.1487	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF526--CXCL17	11	4	ZNF526	1117	chr19:42724539:+	CXCL17	10648	chr19:42938008:-	ONLY_REF_SPLICE	YES	0	104	1	0.13	0.1363	0.0496	ZNF526->chr19:42724423-42732353:+,zinc_finger_protein_526,CXCL17->C-X-C_motif_chemokine_ligand_17,chr19:42932440-42947200:-	HCC202_BREAST	0.13	1	0.1859	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF526--CXCL17	9	10	ZNF526	1117	chr19:42724539:+	CXCL17	9497	chr19:42947056:-	INCL_NON_REF_SPLICE	YES	0	37	1	0.34	0.1115	0.1239	ZNF526->chr19:42724423-42732353:+,zinc_finger_protein_526,CXCL17->C-X-C_motif_chemokine_ligand_17,chr19:42932440-42947200:-	HCC202_BREAST	0.34	1	0.2354	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF526--CXCL17	7	17	ZNF526	1365	chr19:42724787:+	CXCL17	9341	chr19:42947212:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0867	0.2106	ZNF526->chr19:42724423-42732353:+,zinc_finger_protein_526,CXCL17->C-X-C_motif_chemokine_ligand_17,chr19:42932440-42947200:-	HCC202_BREAST	0.92	1	0.2973	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	OSBPL8--NAP1L1	6	19	OSBPL8	3390	chr12:76930790:-	NAP1L1	42297	chr12:76462774:-	INCL_NON_REF_SPLICE	YES	14	331	0.64	0.07	0.0743	0.2354	OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	HCC202_BREAST	0.07	0.64	0.3097	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SPOP--SRCIN1	1	36	SPOP	6604	chr17:47713559:-	SRCIN1	37195	chr17:36709091:-	ONLY_REF_SPLICE	YES	175	55	0.17	0.4	0.0124	0.446	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	HCC202_BREAST	0.17	0.4	0.4584	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PCMTD1--RP11-317N12.1	5	18	PCMTD1	3791	chr8:52773405:-	RP11-317N12.1	24941	chr8:33865374:+	ONLY_REF_SPLICE	YES	60	0	0.28	1	0.0619	0.223	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	HCC202_BREAST	0.28	1	0.2849	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	OSBPL8--NAP1L1	5	17	OSBPL8	2443	chr12:76931737:-	NAP1L1	42297	chr12:76462774:-	ONLY_REF_SPLICE	YES	14	331	0.61	0.06	0.0619	0.2106	OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	HCC202_BREAST	0.06	0.61	0.2725	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	FYCO1--HRAS	7	7	FYCO1	17756	chr3:45996741:-	HRAS	33212	chr11:533944:-	ONLY_REF_SPLICE	YES	21	88	0.4	0.14	0.0867	0.0867	{Klijn_CCL:Breast=1},FYCO1->FYVE_and_coiled-coil_domain_containing_1,chr3:45959396-46037316:-,HRAS->ArcherDX_panel,FoundationOne_panel,Harvey_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr11:532242-537287:-	HCC202_BREAST	0.14	0.4	0.1734	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SPAG9--MLLT10P1	8	3	SPAG9	1512	chr17:49197715:-	MLLT10P1	46517	chr20:29638054:-	INCL_NON_REF_SPLICE	YES	187	0	0.06	1	0.0991	0.0372	SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,MLLT10P1->chr20:29637799-29638060:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10_pseudogene_1	HCC202_BREAST	0.06	1	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ANKRD13B--PCTP	7	4	ANKRD13B	2362	chr17:27920753:+	PCTP	15685	chr17:53844696:+	ONLY_REF_SPLICE	YES	14	7	0.44	0.61	0.0867	0.0496	ANKRD13B->ankyrin_repeat_domain_13B,chr17:27916787-27941779:+,PCTP->chr17:53828340-53920191:+,phosphatidylcholine_transfer_protein	HCC202_BREAST	0.44	0.61	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	HIST2H2BC--OTUD7B	6	4	HIST2H2BC	1360	chr1:149821980:-	OTUD7B	5810	chr1:149949511:-	INCL_NON_REF_SPLICE	YES	79	27	0.11	0.27	0.0743	0.0496	LOCAL_REARRANGEMENT:-:[87366],HIST2H2BC->chr1:149821760-149822339:-,histone_cluster_2,_H2bc_(pseudogene),OTUD7B->OTU_deubiquitinase_7B,chr1:149909705-149982625:-	HCC202_BREAST	0.11	0.27	0.1239	TRUE	0	0	0	2	0	TRUE	ACH-000725
HCC202_BREAST	SLC20A2--PLAT	3	14	SLC20A2	7525	chr8:42358549:-	PLAT	30269	chr8:42050729:-	ONLY_REF_SPLICE	YES	39	0	0.3	1	0.0372	0.1734	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	HCC202_BREAST	0.3	1	0.2106	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	HECTD4--TMEM116	6	1	HECTD4	12575	chr12:112711459:-	TMEM116	89845	chr12:112381115:-	INCL_NON_REF_SPLICE	YES	7	42	0.5	0.14	0.0743	0.0124	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116	HCC202_BREAST	0.14	0.5	0.0867	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SPOP--SRCIN1	4	9	SPOP	1302	chr17:47755295:-	SRCIN1	37456	chr17:36708830:-	ONLY_REF_SPLICE	YES	87	78	0.13	0.14	0.0496	0.1115	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	HCC202_BREAST	0.13	0.14	0.1611	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PCMTD1--RP11-317N12.1	6	0	PCMTD1	1246	chr8:52811490:-	RP11-317N12.1	26041	chr8:33892404:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0743	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	HCC202_BREAST	1	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF670--AGT	6	0	ZNF670	1086	chr1:247242028:-	AGT	17435	chr1:230850067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,AGT->angiotensinogen,chr1:230838269-230850043:-	HCC202_BREAST	1	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	LL0XNC01-237H1.2--WDR44	5	0	LL0XNC01-237H1.2	5399	chrX:102160665:+	WDR44	25009	chrX:117575331:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	LL0XNC01-237H1.2->chrX:102139342-102161086:+,WDR44->WD_repeat_domain_44,chrX:117480036-117583924:+	HCC202_BREAST	1	1	0.0619	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PHF8--NEBL	3	7	PHF8	12278	chrX:54037555:-	NEBL	43031	chr10:21188374:-	INCL_NON_REF_SPLICE	YES	178	57	0.05	0.15	0.0372	0.0867	PHF8->PHD_finger_protein_8,chrX:53963109-54075391:-,NEBL->chr10:21068902-21463116:-,nebulette	HCC202_BREAST	0.05	0.15	0.1239	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZFP90--NFATC3	3	7	ZFP90	2603	chr16:68567758:+	NFATC3	30780	chr16:68215378:+	ONLY_REF_SPLICE	YES	25	32	0.29	0.24	0.0372	0.0867	ZFP90->ZFP90_zinc_finger_protein,chr16:68563993-68609975:+,NFATC3->Oncogene{Bushman},chr16:68118654-68263162:+,nuclear_factor_of_activated_T-cells_3	HCC202_BREAST	0.24	0.29	0.1239	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SLC20A2--PLAT	1	14	SLC20A2	3251	chr8:42391498:-	PLAT	30269	chr8:42050729:-	ONLY_REF_SPLICE	YES	65	0	0.19	1	0.0124	0.1734	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	HCC202_BREAST	0.19	1	0.1858	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SLC20A2--PLAT	1	14	SLC20A2	1475	chr8:42396595:-	PLAT	30269	chr8:42050729:-	ONLY_REF_SPLICE	YES	47	0	0.24	1	0.0124	0.1734	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	HCC202_BREAST	0.24	1	0.1858	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF526--CXCL17	3	4	ZNF526	1117	chr19:42724539:+	CXCL17	9634	chr19:42946919:-	INCL_NON_REF_SPLICE	YES	0	86	1	0.08	0.0372	0.0496	ZNF526->chr19:42724423-42732353:+,zinc_finger_protein_526,CXCL17->C-X-C_motif_chemokine_ligand_17,chr19:42932440-42947200:-	HCC202_BREAST	0.08	1	0.0868	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	FGD1--SLC47A2	3	3	FGD1	2041	chrX:54521559:-	SLC47A2	31766	chr17:19605987:-	ONLY_REF_SPLICE	YES	24	0	0.2	1	0.0372	0.0372	FGD1->FYVE,_RhoGEF_and_PH_domain_containing_1,chrX:54471887-54522599:-,SLC47A2->chr17:19581601-19622292:-,solute_carrier_family_47_member_2	HCC202_BREAST	0.2	1	0.0744	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	CATSPERG--CARD8	1	9	CATSPERG	4876	chr19:38835008:+	CARD8	28100	chr19:48753135:-	ONLY_REF_SPLICE	YES	2	18	0.83	0.36	0.0124	0.1115	CATSPERG->cation_channel_sperm_associated_auxiliary_subunit_gamma,chr19:38826415-38861589:+,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	HCC202_BREAST	0.36	0.83	0.1239	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PCMTD1--RP11-317N12.1	3	1	PCMTD1	3775	chr8:52773421:-	RP11-317N12.1	27080	chr8:33895881:+	ONLY_REF_SPLICE	NO	54	1	0.07	0.8	0.0372	0.0124	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	HCC202_BREAST	0.07	0.8	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PCMTD1--RP11-317N12.1	3	1	PCMTD1	3791	chr8:52773405:-	RP11-317N12.1	27080	chr8:33895881:+	ONLY_REF_SPLICE	YES	60	1	0.06	0.8	0.0372	0.0124	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	HCC202_BREAST	0.06	0.8	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PPP2R3A--NCK1	3	1	PPP2R3A	19245	chr3:135825164:+	NCK1	30157	chr3:136646826:+	ONLY_REF_SPLICE	YES	15	15	0.21	0.21	0.0372	0.0124	PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha,NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+	HCC202_BREAST	0.21	0.21	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF256--TDRD12	1	9	ZNF256	1234	chr19:58458810:-	TDRD12	9521	chr19:33222631:+	ONLY_REF_SPLICE	YES	87	0	0.1	1	0.0124	0.1115	ZNF256->chr19:58452201-58459043:-,zinc_finger_protein_256,TDRD12->chr19:33210659-33320483:+,tudor_domain_containing_12	HCC202_BREAST	0.1	1	0.1239	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	DCUN1D2--TFDP1	3	0	DCUN1D2	1286	chr13:114144982:-	TFDP1	18891	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[93746],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	HCC202_BREAST	1	1	0.0372	TRUE	0	1	0	6	1	TRUE	ACH-000725
HCC202_BREAST	MUC6--TOLLIP	3	0	MUC6	6667	chr11:1028646:-	TOLLIP	33180	chr11:1310006:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming,TOLLIP->chr11:1295601-1330884:-,toll_interacting_protein	HCC202_BREAST	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	NOL12--GGA1	3	0	NOL12	22656	chr22:38147835:+	GGA1	55805	chr22:38028003:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:+:[48109],NOL12->chr22:38077680-38170137:+,nucleolar_protein_12,GGA1->Oncogene{Bushman},chr22:38004481-38029571:+,golgi-associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_1	HCC202_BREAST	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	BRWD1--LCA5L	2	0	BRWD1	16047	chr21:40641825:-	LCA5L	66587	chr21:40795416:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_REARRANGEMENT:-:[84285],BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,LCA5L->Leber_congenital_amaurosis_5-like,chr21:40777770-40817731:-	HCC202_BREAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	HECTD4--TMEM116	2	0	HECTD4	10320	chr12:112717032:-	TMEM116	89787	chr12:112381173:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116	HCC202_BREAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	NPDC1--ANAPC2	2	0	NPDC1	3492	chr9:139937379:-	ANAPC2	13757	chr9:140078243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1,ANAPC2->anaphase_promoting_complex_subunit_2,chr9:140069236-140082989:-	HCC202_BREAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SERINC2--ZCCHC17	2	0	SERINC2	10790	chr1:31901915:+	ZCCHC17	21313	chr1:31810022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_REARRANGEMENT:+:[44629],SERINC2->chr1:31882412-31907525:+,serine_incorporator_2,ZCCHC17->chr1:31769842-31837783:+,zinc_finger_CCHC-type_containing_17	HCC202_BREAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SERINC2--ZCCHC17	2	0	SERINC2	11260	chr1:31902385:+	ZCCHC17	21313	chr1:31810022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_REARRANGEMENT:+:[44629],SERINC2->chr1:31882412-31907525:+,serine_incorporator_2,ZCCHC17->chr1:31769842-31837783:+,zinc_finger_CCHC-type_containing_17	HCC202_BREAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF256--TDRD12	1	4	ZNF256	1234	chr19:58458810:-	TDRD12	10680	chr19:33229762:+	ONLY_REF_SPLICE	YES	87	6	0.05	0.45	0.0124	0.0496	ZNF256->chr19:58452201-58459043:-,zinc_finger_protein_256,TDRD12->chr19:33210659-33320483:+,tudor_domain_containing_12	HCC202_BREAST	0.05	0.45	0.062	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	OPHN1--KB-1562D12.1	1	3	OPHN1	2047	chrX:67652709:-	KB-1562D12.1	37011	chr8:102473845:-	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0124	0.0372	OPHN1->chrX:67262186-67653755:-,oligophrenin_1,KB-1562D12.1->chr8:102473405-102504727:-	HCC202_BREAST	0.2	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PCMTD1--RP11-317N12.1	1	3	PCMTD1	3791	chr8:52773405:-	RP11-317N12.1	26041	chr8:33892404:+	ONLY_REF_SPLICE	YES	60	1	0.06	0.8	0.0124	0.0372	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	HCC202_BREAST	0.06	0.8	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000725
NCIH28_PLEURA	SHPK--TAX1BP3	9	3	SHPK	1271	chr17:3539346:-	TAX1BP3	30520	chr17:3568092:-	ONLY_REF_SPLICE	YES	21	27	0.36	0.31	0.0953	0.0318	{Klijn_CCL:Other=1},LOCAL_INVERSION:-,chr17:-:[26653],SHPK->chr17:3468738-3539543:-,chr17:3511556-3539616:-,sedoheptulokinase,TAX1BP3->Tax1_binding_protein_3,chr17:3566196-3571976:-	NCIH28_PLEURA	0.31	0.36	0.1271	TRUE	0	0	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	RRP12--MMS19	8	1	RRP12	20351	chr10:99125865:-	MMS19	36086	chr10:99230618:-	ONLY_REF_SPLICE	YES	60	73	0.13	0.11	0.0847	0.0106	LOCAL_REARRANGEMENT:-:[56954],RRP12->chr10:99116115-99161127:-,ribosomal_RNA_processing_12_homolog,MMS19->MMS19_homolog,_cytosolic_iron-sulfur_assembly_component,chr10:99218081-99258551:-	NCIH28_PLEURA	0.11	0.13	0.0953	TRUE	0	0	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	ACTR3C--RP11-728K20.1	6	2	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	8	0	0.5	1	0.0635	0.0212	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	NCIH28_PLEURA	0.5	1	0.0847	TRUE	0	5	0	16	1	TRUE	ACH-000648
NCIH28_PLEURA	C4orf22--PPARGC1A	5	2	C4orf22	1160	chr4:81257033:+	PPARGC1A	31541	chr4:23833374:-	ONLY_REF_SPLICE	YES	0	67	1	0.09	0.0529	0.0212	C4orf22->chr4:81256874-81884910:+,chromosome_4_open_reading_frame_22,PPARGC1A->PPARG_coactivator_1_alpha,chr4:23756664-23905712:-	NCIH28_PLEURA	0.09	1	0.0741	TRUE	0	0	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	ESYT2--ZRANB2	2	0	ESYT2	6472	chr7:158586341:-	ZRANB2	40332	chr1:71532617:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2,ZRANB2->chr1:71528974-71546980:-,zinc_finger_RANBP2-type_containing_2	NCIH28_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	GNPTG--HAGH	2	0	GNPTG	1384	chr16:1402307:+	HAGH	20565	chr16:1859834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+,HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase	NCIH28_PLEURA	1	1	0.0212	TRUE	0	1	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	PROSC--CLPTM1L	2	0	PROSC	2996	chr8:37623873:+	CLPTM1L	18228	chr5:1334498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	NCIH28_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	STAG3L2--WWTR1	2	0	STAG3L2	5861	chr7:74299455:-	WWTR1	25918	chr3:149260324:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	STAG3L2->chr7:74112305-74306731:-,stromal_antigen_3-like_2_(pseudogene),WWTR1->WW_domain_containing_transcription_regulator_1,chr3:149235022-149454501:-	NCIH28_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	ACTR3C--RP11-728K20.1	1	1	ACTR3C	9721	chr7:149946037:-	RP11-728K20.1	18809	chr7:149589487:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0106	0.0106	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	NCIH28_PLEURA	0.2	1	0.0212	TRUE	0	2	0	2	2	TRUE	ACH-000648
CACO2_LARGE_INTESTINE	PEX14--PTPN14	33	2	PEX14	3457	chr1:10555378:+	PTPN14	46601	chr1:214531393:-	ONLY_REF_SPLICE	YES	12	38	0.74	0.48	0.3985	0.0242	{Klijn_CCL:Colo-Rectal=1},PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14,PTPN14->Oncogene{Bushman},chr1:214522039-214725792:-,protein_tyrosine_phosphatase,_non-receptor_type_14	CACO2_LARGE_INTESTINE	0.48	0.74	0.4227	TRUE	0	0	0	2	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	BRCA2--N4BP2L2	19	16	BRCA2	18217	chr13:32921033:+	N4BP2L2	55606	chr13:33018263:-	ONLY_REF_SPLICE	YES	12	9	0.74	0.8	0.2294	0.1932	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:+:-:[32749],BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	CACO2_LARGE_INTESTINE	0.74	0.8	0.4226	TRUE	0	0	0	2	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	DPP3--SLC46A1	8	7	DPP3	13776	chr11:66264948:+	SLC46A1	20103	chr17:26733641:-	ONLY_REF_SPLICE	YES	378	11	0.04	0.58	0.0966	0.0845	DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3,SLC46A1->chr17:26721661-26734215:-,solute_carrier_family_46_member_1	CACO2_LARGE_INTESTINE	0.04	0.58	0.1811	TRUE	0	0	0	2	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	ARL3--CYP17A1-AS1	4	6	ARL3	2279	chr10:104465103:-	CYP17A1-AS1	13996	chr10:104593934:+	ONLY_REF_SPLICE	YES	142	1	0.07	0.91	0.0483	0.0725	ARL3->ADP_ribosylation_factor_like_GTPase_3,chr10:104433488-104474164:-,CYP17A1-AS1->CYP17A1_antisense_RNA_1,chr10:104592478-104594273:+	CACO2_LARGE_INTESTINE	0.07	0.91	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	BSG--GZMM	4	0	BSG	2405	chr19:572701:+	GZMM	14559	chr19:547280:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[21378],BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GZMM->chr19:544034-549919:+,granzyme_M	CACO2_LARGE_INTESTINE	1	1	0.0483	TRUE	0	0	0	5	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	CTD-3116E22.6--ZNF274	4	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	CACO2_LARGE_INTESTINE	1	1	0.0483	TRUE	0	0	0	13	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	TMEM206--GUCA2B	3	1	TMEM206	8682	chr1:212550904:-	GUCA2B	17125	chr1:42620351:+	ONLY_REF_SPLICE	YES	42	3	0.09	0.57	0.0362	0.0121	TMEM206->chr1:212537273-212588243:-,transmembrane_protein_206,GUCA2B->chr1:42619092-42621495:+,guanylate_cyclase_activator_2B	CACO2_LARGE_INTESTINE	0.09	0.57	0.0483	TRUE	0	0	0	2	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	DPP3--SLC46A1	3	0	DPP3	13776	chr11:66264948:+	SLC46A1	20729	chr17:26733015:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3,SLC46A1->chr17:26721661-26734215:-,solute_carrier_family_46_member_1	CACO2_LARGE_INTESTINE	1	1	0.0362	TRUE	0	0	0	2	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	BRCA2--N4BP2L2	2	0	BRCA2	18217	chr13:32921033:+	N4BP2L2	57184	chr13:33016685:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:+:-:[32749],BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	CACO2_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	C17orf76-AS1--AGPS	2	0	C17orf76-AS1	1593	chr17:16342728:+	AGPS	21684	chr2:178326621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	C17orf76-AS1->chr17:16342136-16381992:+,AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+	CACO2_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	OAZ2--ADD1	2	0	OAZ2	1253	chr15:64995228:-	ADD1	21065	chr4:2877623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	OAZ2->chr15:64979772-64995480:-,ornithine_decarboxylase_antizyme_2,ADD1->adducin_1,chr4:2845584-2931803:+	CACO2_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	RP11-1057B8.2--RP11-452N4.1	2	0	RP11-1057B8.2	3793	chr8:135893523:+	RP11-452N4.1	9814	chr8:136303419:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RP11-1057B8.2->chr8:135862178-135894142:+,RP11-452N4.1->chr8:136246374-136311962:+	CACO2_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	2	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	RP11-227G15.3--ATP2A2	2	0	RP11-227G15.3	3319	chr17:30678931:+	ATP2A2	27282	chr12:110780033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RP11-227G15.3->chr17:30651450-30687719:+,ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+	CACO2_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	STX7--DSP	2	0	STX7	2335	chr6:132824585:-	DSP	52426	chr6:7582875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	STX7->chr6:132767006-132834337:-,syntaxin_7,DSP->chr6:7541808-7586950:+,desmoplakin	CACO2_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	TNS3--AC091770.3	1	1	TNS3	1508	chr7:47621649:-	AC091770.3	49680	chr7:48700491:-	ONLY_REF_SPLICE	YES	34	0	0.06	1	0.0121	0.0121	TNS3->chr7:47314752-47622156:-,tensin_3,AC091770.3->chr7:48700171-48702901:-	CACO2_LARGE_INTESTINE	0.06	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000003
HPAFII_PANCREAS	ZNF3--PPP1R9A	191	59	ZNF3	7049	chr7:99672758:-	PPP1R9A	33771	chr7:94913330:+	ONLY_REF_SPLICE	YES	49	0	0.84	1	1.7587	0.5433	ZNF3->chr7:99661656-99680171:-,zinc_finger_protein_3,PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A	HPAFII_PANCREAS	0.84	1	2.302	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	CLIC4--TRNP1	152	44	CLIC4	5761	chr1:25153607:+	TRNP1	16151	chr1:27326338:+	ONLY_REF_SPLICE	YES	56	694	0.78	0.22	1.3996	0.4051	CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,TRNP1->TMF1-regulated_nuclear_protein_1,chr1:27320198-27327389:+	HPAFII_PANCREAS	0.22	0.78	1.8047	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	IL17RC--MTMR14	51	36	IL17RC	5252	chr3:9965704:+	MTMR14	33238	chr3:9739395:+	ONLY_REF_SPLICE	YES	83	118	0.51	0.42	0.4696	0.3315	IL17RC->chr3:9958758-9975314:+,interleukin_17_receptor_C,MTMR14->chr3:9691117-9744077:+,myotubularin_related_protein_14	HPAFII_PANCREAS	0.42	0.51	0.8011	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	NSFP1--SAMD12	50	24	NSFP1	8226	chr17:44503048:+	SAMD12	24766	chr8:119209971:-	ONLY_REF_SPLICE	YES	65	9	0.53	0.89	0.4604	0.221	NSFP1->N-ethylmaleimide-sensitive_factor_pseudogene_1,chr17:44450221-44564507:+,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	HPAFII_PANCREAS	0.53	0.89	0.6814	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	LA16c-325D7.1--IFNGR2	23	12	LA16c-325D7.1	1761	chr16:2908659:+	IFNGR2	14474	chr21:34809135:+	ONLY_REF_SPLICE	YES	2	299	0.95	0.1	0.2118	0.1105	LA16c-325D7.1->chr16:2907899-2909727:+,IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1)	HPAFII_PANCREAS	0.1	0.95	0.3223	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	LA16c-325D7.1--IFNGR2	13	3	LA16c-325D7.1	1036	chr16:2907934:+	IFNGR2	14474	chr21:34809135:+	ONLY_REF_SPLICE	YES	0	299	1	0.05	0.1197	0.0276	LA16c-325D7.1->chr16:2907899-2909727:+,IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1)	HPAFII_PANCREAS	0.05	1	0.1473	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	EXT1--LRRC37A	9	6	EXT1	2769	chr8:119122324:-	LRRC37A	29267	chr17:44377160:+	ONLY_REF_SPLICE	YES	142	4	0.1	0.79	0.0829	0.0552	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	HPAFII_PANCREAS	0.1	0.79	0.1381	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	RAB43--LINC00635	7	11	RAB43	2516	chr3:128840129:-	LINC00635	22012	chr3:107576049:-	ONLY_REF_SPLICE	YES	41	1	0.31	0.95	0.0645	0.1013	RAB43->RAB43,_member_RAS_oncogene_family,chr3:128806412-128841644:-,LINC00635->chr3:107559075-107600847:-,long_intergenic_non-protein_coding_RNA_635	HPAFII_PANCREAS	0.31	0.95	0.1658	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	C5orf56--SLC22A5	5	6	C5orf56	3564	chr5:131785381:+	SLC22A5	24151	chr5:131719839:+	ONLY_REF_SPLICE	YES	12	38	0.48	0.22	0.046	0.0552	{Klijn_CCL:Kidney=1},LOCAL_REARRANGEMENT:+:[15022],C5orf56->chr5:131746328-131811736:+,chromosome_5_open_reading_frame_56,SLC22A5->chr5:131705444-131731306:+,solute_carrier_family_22_member_5	HPAFII_PANCREAS	0.22	0.48	0.1012	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	F3--S100A6	5	0	F3	1194	chr1:95007163:-	S100A6	11318	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HPAFII_PANCREAS	1	1	0.046	TRUE	0	0	0	3	0	TRUE	ACH-000094
HPAFII_PANCREAS	SNRK--ITPR2	4	2	SNRK	4971	chr3:43345284:+	ITPR2	60501	chr12:26648193:-	ONLY_REF_SPLICE	YES	13	1	0.32	0.86	0.0368	0.0184	SNRK->SNF_related_kinase,chr3:43328004-43466256:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	HPAFII_PANCREAS	0.32	0.86	0.0552	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	ZNF3--PPP1R9A	3	2	ZNF3	6642	chr7:99673165:-	PPP1R9A	35084	chr7:94915518:+	ONLY_REF_SPLICE	YES	80	12	0.06	0.29	0.0276	0.0184	ZNF3->chr7:99661656-99680171:-,zinc_finger_protein_3,PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A	HPAFII_PANCREAS	0.06	0.29	0.046	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	PSMA5--AKNAD1	3	0	PSMA5	1139	chr1:109968924:-	AKNAD1	30371	chr1:109366310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	PSMA5->Oncogene{Bushman},chr1:109941653-109969062:-,proteasome_subunit_alpha_5,AKNAD1->AKNA_domain_containing_1,chr1:109358520-109506106:-	HPAFII_PANCREAS	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	AC027763.2--TBC1D15	2	0	AC027763.2	3633	chr17:6905803:-	TBC1D15	32501	chr12:72307606:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	AC027763.2->chr17:6779954-6915668:-,TBC1D15->TBC1_domain_family_member_15,chr12:72233487-72320629:+	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	ARRDC1--NELFB	2	0	ARRDC1	1182	chr9:140500287:+	NELFB	16744	chr9:140166533:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	ARRDC1->arrestin_domain_containing_1,chr9:140500106-140509812:+,NELFB->chr9:140149625-140167998:+,negative_elongation_factor_complex_member_B	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	BLCAP--GTF2E1	2	0	BLCAP	5995	chr20:36147634:-	GTF2E1	19206	chr3:120489575:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	BLCAP->Oncogene{Bushman},bladder_cancer_associated_protein,chr20:36120874-36156333:-,GTF2E1->chr3:120461484-120501916:+,general_transcription_factor_IIE_subunit_1	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	BRK1--TM7SF3	2	0	BRK1	1228	chr3:10157503:+	TM7SF3	16105	chr12:27135792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+,TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	CYP24A1--TPT1	2	0	CYP24A1	10936	chr20:52773708:-	TPT1	20404	chr13:45911523:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,TPT1->chr13:45911008-45915505:-,tumor_protein,_translationally-controlled_1	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	EIF3E--EIF3H	2	0	EIF3E	6301	chr8:109260842:-	EIF3H	33964	chr8:117738411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	LEKR1--RP11-114M1.2	2	0	LEKR1	3721	chr3:156547166:+	RP11-114M1.2	24905	chr3:177340491:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	LEKR1->chr3:156543270-156763918:+,leucine,_glutamate_and_lysine_rich_1,RP11-114M1.2->chr3:177339170-177346075:-	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	MUC20--MTX2	2	0	MUC20	1202	chr3:195447954:+	MTX2	20112	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	MUC20->chr3:195447753-195467994:+,mucin_20,_cell_surface_associated,MTX2->chr2:177134123-177202753:+,metaxin_2	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	MYO1C--CCND1	2	0	MYO1C	1400	chr17:1395707:-	CCND1	30230	chr11:69462762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	MYO1C->chr17:1367392-1396106:-,myosin_IC,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	NQO1--RPS27A	2	0	NQO1	2684	chr16:69752273:-	RPS27A	13276	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	NR5A2--FAM192A	2	0	NR5A2	14933	chr1:200090083:+	FAM192A	28387	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	NR5A2->chr1:199996730-200146552:+,nuclear_receptor_subfamily_5_group_A_member_2,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	RP11-613M10.8--DSG2	2	0	RP11-613M10.8	2340	chr9:37588750:-	DSG2	20494	chr18:29099766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RP11-613M10.8->chr9:37512544-37592466:-,DSG2->Oncogene{Bushman},chr18:29078006-29128971:+,desmoglein_2	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	SGK2--LRRC8A	2	0	SGK2	1192	chr20:42187799:+	LRRC8A	26732	chr9:131678375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	SGK2->SGK2,_serine/threonine_kinase_2,chr20:42187608-42216877:+,LRRC8A->chr9:131644391-131680318:+,leucine-rich_repeat_containing_8_family_member_A	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	YBEY--PARK7	2	0	YBEY	1787	chr21:47707037:+	PARK7	13542	chr1:8029405:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	YBEY->chr21:47706251-47717665:+,ybeY_metallopeptidase_(putative),PARK7->Parkinsonism_associated_deglycase,chr1:8014351-8045565:+	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	ZNF20--SH3KBP1	2	0	ZNF20	4162	chr19:12246584:-	SH3KBP1	17768	chrX:19764559:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	ZNF20->chr19:12203658-12251222:-,zinc_finger_protein_20,SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	ZNF3--PPP1R9A	1	2	ZNF3	7049	chr7:99672758:-	PPP1R9A	35084	chr7:94915518:+	ONLY_REF_SPLICE	NO	49	12	0.06	0.2	0.0092	0.0184	ZNF3->chr7:99661656-99680171:-,zinc_finger_protein_3,PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A	HPAFII_PANCREAS	0.06	0.2	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000094
GMS10_CENTRAL_NERVOUS_SYSTEM	PPP5C--HIF3A	119	39	PPP5C	4437	chr19:46879831:+	HIF3A	35347	chr19:46838162:+	ONLY_REF_SPLICE	YES	155	0	0.5	1	1.2489	0.4093	LOCAL_REARRANGEMENT:+:[3561],PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,HIF3A->chr19:46800303-46846690:+,hypoxia_inducible_factor_3_alpha_subunit	GMS10_CENTRAL_NERVOUS_SYSTEM	0.5	1	1.6582	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	DNAJC13--PPARGC1A	54	20	DNAJC13	44999	chr3:132233514:+	PPARGC1A	82578	chr4:23797548:-	ONLY_REF_SPLICE	YES	120	13	0.38	0.85	0.5667	0.2099	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,PPARGC1A->PPARG_coactivator_1_alpha,chr4:23756664-23905712:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.38	0.85	0.7766	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	HECTD4--TMPO	49	15	HECTD4	43974	chr12:112664447:-	TMPO	84454	chr12:98921664:+	ONLY_REF_SPLICE	YES	25	749	0.72	0.08	0.5143	0.1574	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,TMPO->chr12:98909290-98944157:+,thymopoietin	GMS10_CENTRAL_NERVOUS_SYSTEM	0.08	0.72	0.6717	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	GABPB1--ANKS1B	39	23	GABPB1	1424	chr15:50647182:-	ANKS1B	39950	chr12:99640642:-	ONLY_REF_SPLICE	YES	95	1	0.39	0.98	0.4093	0.2414	HGNC_GENEFAM,GABPB1->GA_binding_protein_transcription_factor_beta_subunit_1,Oncogene{Bushman},chr15:50569389-50647605:-,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.39	0.98	0.6507	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TMEM116--ACAD10	32	14	TMEM116	10856	chr12:112374964:-	ACAD10	32029	chr12:112159475:+	ONLY_REF_SPLICE	YES	16	28	0.74	0.62	0.3358	0.1469	TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116,ACAD10->acyl-CoA_dehydrogenase_family_member_10,chr12:112123857-112194903:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.62	0.74	0.4827	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	DNMBP--KIAA1217	23	7	DNMBP	3360	chr10:101728872:-	KIAA1217	31156	chr10:24166335:+	ONLY_REF_SPLICE	YES	19	0	0.61	1	0.2414	0.0735	DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein,KIAA1217->KIAA1217,chr10:23983675-24836772:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.61	1	0.3149	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	LIMK2--SMTN	23	7	LIMK2	2286	chr22:31621805:+	SMTN	24392	chr22:31476436:+	ONLY_REF_SPLICE	YES	30	0	0.5	1	0.2414	0.0735	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,SMTN->chr22:31460091-31500743:+,smoothelin	GMS10_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.3149	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	PPP5C--HIF3A	7	22	PPP5C	4437	chr19:46879831:+	HIF3A	37727	chr19:46842782:+	ONLY_REF_SPLICE	YES	155	1	0.16	0.97	0.0735	0.2309	LOCAL_REARRANGEMENT:+:[3561],PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,HIF3A->chr19:46800303-46846690:+,hypoxia_inducible_factor_3_alpha_subunit	GMS10_CENTRAL_NERVOUS_SYSTEM	0.16	0.97	0.3044	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	ZBTB20--CD96	10	5	ZBTB20	6598	chr3:114693213:-	CD96	61035	chr3:111356043:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.105	0.0525	ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,CD96->CD96_molecule,chr3:111011566-111384597:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1575	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TMEM116--ACAD10	8	11	TMEM116	9855	chr12:112375965:-	ACAD10	32029	chr12:112159475:+	ONLY_REF_SPLICE	YES	17	28	0.53	0.4	0.084	0.1154	TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116,ACAD10->acyl-CoA_dehydrogenase_family_member_10,chr12:112123857-112194903:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.4	0.53	0.1994	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	GABPB1--ANKS1B	3	23	GABPB1	2448	chr15:50638569:-	ANKS1B	39950	chr12:99640642:-	ONLY_REF_SPLICE	YES	100	1	0.21	0.96	0.0315	0.2414	HGNC_GENEFAM,GABPB1->GA_binding_protein_transcription_factor_beta_subunit_1,Oncogene{Bushman},chr15:50569389-50647605:-,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.21	0.96	0.2729	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	RP11-115J23.1--PAX6	5	5	RP11-115J23.1	2304	chr11:28763455:+	PAX6	14577	chr11:31832563:-	ONLY_REF_SPLICE	YES	1	258	0.91	0.04	0.0525	0.0525	RP11-115J23.1->chr11:28724162-29085368:+,PAX6->Oncogene{Bushman},chr11:31806340-31839509:-,paired_box_6	GMS10_CENTRAL_NERVOUS_SYSTEM	0.04	0.91	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TPM1--UBB	6	0	TPM1	11638	chr15:63354803:+	UBB	22294	chr17:16285216:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.063	0	GTEx&tcga_normals:1/3694=0.03%,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha),UBB->chr17:16284112-16286059:+,ubiquitin_B	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.063	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	DNAJC6--AK4	4	3	DNAJC6	8435	chr1:65831879:+	AK4	34543	chr1:65656393:+	ONLY_REF_SPLICE	YES	38	49	0.16	0.12	0.042	0.0315	LOCAL_REARRANGEMENT:+:[16074],DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,AK4->adenylate_kinase_4,chr1:65613232-65697828:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.12	0.16	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	DNAJC13--PPARGC1A	2	8	DNAJC13	43899	chr3:132231943:+	PPARGC1A	82578	chr4:23797548:-	ONLY_REF_SPLICE	YES	95	13	0.1	0.43	0.021	0.084	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,PPARGC1A->PPARG_coactivator_1_alpha,chr4:23756664-23905712:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.1	0.43	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	HCG4P5--EEF2	3	1	HCG4P5	1523	chr6:29910322:-	EEF2	5033	chr19:3985428:-	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0315	0.0105	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	GMS10_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.042	TRUE	0	0	0	3	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TMEM116--ACAD10	1	9	TMEM116	8801	chr12:112381069:-	ACAD10	32029	chr12:112159475:+	ONLY_REF_SPLICE	NO	27	28	0.27	0.26	0.0105	0.0945	TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116,ACAD10->acyl-CoA_dehydrogenase_family_member_10,chr12:112123857-112194903:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.26	0.27	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	PRKD1--CTD-2251F13.1	2	1	PRKD1	2678	chr14:30516916:-	CTD-2251F13.1	39150	chr14:30442439:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.021	0.0105	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	ACTN1--SLC39A9	2	0	ACTN1	8201	chr14:69387723:-	SLC39A9	41481	chr14:69919958:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	ACTN1->actinin_alpha_1,chr14:69340860-69446157:-,SLC39A9->chr14:69864732-69929105:+,solute_carrier_family_39_member_9	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	AL136419.6--UBB	2	0	AL136419.6	6640	chr14:24679554:-	UBB	11447	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	AL136419.6->chr14:24678852-24685193:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	CEP89--UBA2	2	0	CEP89	14040	chr19:33422335:-	UBA2	35147	chr19:34929550:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	COL4A1--ELMOD2	2	0	COL4A1	2266	chr13:110895022:-	ELMOD2	52383	chr4:141456887:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1,ELMOD2->ELMO_domain_containing_2,chr4:141445312-141474924:+	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	EIF3M--GANAB	2	0	EIF3M	1132	chr11:32605475:+	GANAB	19008	chr11:62407203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	LAMB2--COL1A2	2	0	LAMB2	6796	chr3:49163796:-	COL1A2	36379	chr7:94049853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	LAMB2->chr3:49158547-49170551:-,laminin_subunit_beta_2,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	PCYT1A--TFRC	2	0	PCYT1A	1343	chr3:196014486:-	TFRC	23609	chr3:195803993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha,TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	RBM39--ILF2	2	0	RBM39	16052	chr20:34302107:-	ILF2	33218	chr1:153636950:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-,ILF2->chr1:153634512-153643524:-,interleukin_enhancer_binding_factor_2	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	SNHG16--RAC1	2	0	SNHG16	1092	chr17:74553939:+	RAC1	13523	chr7:6426843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,RAC1->ArcherDX_panel,FoundationOne_panel,chr7:6414154-6443608:+,ras-related_C3_botulinum_toxin_substrate_1_(rho_family,_small_GTP_binding_protein_Rac1)	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	SNX12--DEK	2	0	SNX12	4204	chrX:70280878:-	DEK	12423	chr6:18256686:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	SNX12->chrX:70279094-70288273:-,sorting_nexin_12,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TP53BP2--SRP54	2	0	TP53BP2	3652	chr1:224008922:-	SRP54	43678	chr14:35497294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2,SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	VAPB--STX16	2	0	VAPB	3372	chr20:56993419:+	STX16	24362	chr20:57242546:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx&tcga_normals:1/3694=0.03%,VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,STX16->chr20:57226328-57254582:+,syntaxin_16	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	ZBTB20--CD96	1	4	ZBTB20	6598	chr3:114693213:-	CD96	61038	chr3:111356046:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0105	0.042	ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,CD96->CD96_molecule,chr3:111011566-111384597:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TMEM116--ACAD10	1	3	TMEM116	5462	chr12:112429562:-	ACAD10	32029	chr12:112159475:+	ONLY_REF_SPLICE	YES	25	28	0.14	0.12	0.0105	0.0315	TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116,ACAD10->acyl-CoA_dehydrogenase_family_member_10,chr12:112123857-112194903:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.12	0.14	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TMEM116--ACAD10	1	3	TMEM116	6528	chr12:112416540:-	ACAD10	32029	chr12:112159475:+	ONLY_REF_SPLICE	NO	29	28	0.12	0.12	0.0105	0.0315	TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116,ACAD10->acyl-CoA_dehydrogenase_family_member_10,chr12:112123857-112194903:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.12	0.12	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	DNMBP--KIAA1217	1	1	DNMBP	3360	chr10:101728872:-	KIAA1217	32246	chr10:24296154:+	ONLY_REF_SPLICE	NO	19	1	0.1	0.67	0.0105	0.0105	DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein,KIAA1217->KIAA1217,chr10:23983675-24836772:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.1	0.67	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
HS729_SOFT_TISSUE	HEG1--MED12L	1001	425	HEG1	3981	chr3:124746049:-	MED12L	51379	chr3:151067847:+	ONLY_REF_SPLICE	YES	237	1	0.86	1	11.6971	4.9663	HEG1->chr3:124684554-124774802:-,heart_development_protein_with_EGF_like_domains_1,MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like	HS729_SOFT_TISSUE	0.86	1	16.6634	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	DHCR24--SLC2A1	187	59	DHCR24	4712	chr1:55340766:-	SLC2A1	18143	chr1:43408992:-	ONLY_REF_SPLICE	YES	159	262	0.61	0.48	2.1852	0.6894	DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-,SLC2A1->chr1:43391052-43424530:-,solute_carrier_family_2_member_1	HS729_SOFT_TISSUE	0.48	0.61	2.8746	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TRANK1--CAV3	109	38	TRANK1	8785	chr3:36931320:-	CAV3	40936	chr3:8883028:+	ONLY_REF_SPLICE	YES	7	0	0.95	1	1.2737	0.444	TRANK1->chr3:36868311-36986548:-,tetratricopeptide_repeat_and_ankyrin_repeat_containing_1,CAV3->caveolin_3,chr3:8775486-8883492:+	HS729_SOFT_TISSUE	0.95	1	1.7177	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	C11orf58--PTGIS	96	39	C11orf58	12485	chr11:16774441:+	PTGIS	21701	chr20:48164556:-	ONLY_REF_SPLICE	YES	722	29	0.16	0.82	1.1218	0.4557	C11orf58->chr11:16634679-16778428:+,chromosome_11_open_reading_frame_58,PTGIS->Oncogene{Bushman},chr20:48120411-48184683:-,prostaglandin_I2_(prostacyclin)_synthase	HS729_SOFT_TISSUE	0.16	0.82	1.5775	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ITGB8--ABCB5	95	20	ITGB8	12750	chr7:20421508:+	ABCB5	60472	chr7:20792983:+	ONLY_REF_SPLICE	YES	30	0	0.79	1	1.1101	0.2337	ITGB8->chr7:20370325-20455377:+,integrin_subunit_beta_8,ABCB5->ATP_binding_cassette_subfamily_B_member_5,Oncogene{Bushman},chr7:20654830-20816658:+	HS729_SOFT_TISSUE	0.79	1	1.3438	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	PLXNB2--PPP3R1	97	4	PLXNB2	1075	chr22:50745982:-	PPP3R1	26594	chr2:68444263:-	ONLY_REF_SPLICE	YES	1	19	0.99	0.84	1.1335	0.0467	PLXNB2->chr22:50713408-50746056:-,plexin_B2,PPP3R1->chr2:68405989-68483369:-,protein_phosphatase_3_regulatory_subunit_B,_alpha	HS729_SOFT_TISSUE	0.84	0.99	1.1802	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	QKI--SECTM1	81	34	QKI	2336	chr6:163836367:+	SECTM1	34450	chr17:80285168:-	ONLY_REF_SPLICE	YES	71	9	0.62	0.93	0.9465	0.3973	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,SECTM1->chr17:80278900-80291950:-,secreted_and_transmembrane_1	HS729_SOFT_TISSUE	0.62	0.93	1.3438	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EXOSC3--MYRIP	73	62	EXOSC3	3115	chr9:37784718:-	MYRIP	19427	chr3:40192539:+	ONLY_REF_SPLICE	YES	71	0	0.66	1	0.853	0.7245	EXOSC3->chr9:37766975-37801434:-,exosome_component_3,MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein	HS729_SOFT_TISSUE	0.66	1	1.5775	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MIR1539--C18orf32	65	17	MIR1539	1152	chr18:47013860:+	C18orf32	7403	chr18:47010141:-	INCL_NON_REF_SPLICE	YES	1	205	0.99	0.29	0.7596	0.1987	LOCAL_INVERSION:+:-:[87],MIR1539->chr18:47013709-47018248:+,microRNA_1539,C18orf32->chr18:47008028-47013622:-,chromosome_18_open_reading_frame_32	HS729_SOFT_TISSUE	0.29	0.99	0.9583	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	STAT1--PLIN2	52	18	STAT1	25527	chr2:191839556:-	PLIN2	33730	chr9:19131269:-	ONLY_REF_SPLICE	YES	215	0	0.25	1	0.6076	0.2103	STAT1->chr2:191829084-191885686:-,signal_transducer_and_activator_of_transcription_1,PLIN2->chr9:19108373-19149288:-,perilipin_2	HS729_SOFT_TISSUE	0.25	1	0.8179	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MPRIP--CCDC144A	48	6	MPRIP	4886	chr17:16981390:+	CCDC144A	70454	chr17:16664739:+	ONLY_REF_SPLICE	YES	236	10	0.19	0.84	0.5609	0.0701	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,CCDC144A->chr17:16592851-16707767:+,coiled-coil_domain_containing_144A	HS729_SOFT_TISSUE	0.19	0.84	0.631	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	JARID2--SMIM15	40	33	JARID2	3478	chr6:15374483:+	SMIM15	29356	chr5:60457054:-	ONLY_REF_SPLICE	YES	14	272	0.84	0.21	0.4674	0.3856	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,SMIM15->chr5:60453536-60458301:-,small_integral_membrane_protein_15	HS729_SOFT_TISSUE	0.21	0.84	0.853	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	NFASC--CD9	43	15	NFASC	3708	chr1:204889868:+	CD9	60079	chr12:6334592:+	ONLY_REF_SPLICE	YES	1	125	0.98	0.32	0.5025	0.1753	NFASC->chr1:204797779-204991950:+,neurofascin,CD9->CD9_molecule,Oncogene{Bushman},chr12:6308881-6347425:+	HS729_SOFT_TISSUE	0.32	0.98	0.6778	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	GMDS--FARS2	36	10	GMDS	8873	chr6:1960101:-	FARS2	31979	chr6:5771524:+	ONLY_REF_SPLICE	YES	27	14	0.63	0.77	0.4207	0.1169	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial	HS729_SOFT_TISSUE	0.63	0.77	0.5376	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CUL1--OPN1SW	25	12	CUL1	2116	chr7:148396121:+	OPN1SW	24165	chr7:128415702:-	INCL_NON_REF_SPLICE	YES	60	0	0.38	1	0.2921	0.1402	CUL1->Oncogene{Bushman},chr7:148395006-148498128:+,cullin_1,OPN1SW->chr7:128412545-128415844:-,opsin_1_(cone_pigments),_short-wave-sensitive	HS729_SOFT_TISSUE	0.38	1	0.4323	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	DERA--VWF	28	0	DERA	1243	chr12:16064348:+	VWF	29011	chr12:6174439:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3272	0	DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase,VWF->chr12:6058040-6233936:-,von_Willebrand_factor	HS729_SOFT_TISSUE	1	1	0.3272	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RASA2--ADIPOR2	23	18	RASA2	18694	chr3:141300019:+	ADIPOR2	40404	chr12:1887020:+	ONLY_REF_SPLICE	YES	17	72	0.71	0.36	0.2688	0.2103	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	HS729_SOFT_TISSUE	0.36	0.71	0.4791	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZDHHC3--MIR1302-10	26	5	ZDHHC3	7478	chr3:44974610:-	MIR1302-10	22330	chr15:102500185:-	ONLY_REF_SPLICE	YES	171	0	0.15	1	0.3038	0.0584	ZDHHC3->Oncogene{Bushman},chr3:44956749-45017677:-,zinc_finger_DHHC-type_containing_3,MIR1302-10->chr15:102500051-102501611:-,microRNA_1302-10	HS729_SOFT_TISSUE	0.15	1	0.3622	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EIF5B--AC104655.2	22	19	EIF5B	9953	chr2:99993099:+	AC104655.2	28689	chr2:105714720:-	ONLY_REF_SPLICE	YES	227	0	0.15	1	0.2571	0.222	EIF5B->chr2:99953816-100017789:+,eukaryotic_translation_initiation_factor_5B,AC104655.2->chr2:105713510-105719402:-	HS729_SOFT_TISSUE	0.15	1	0.4791	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EIF5B--AC104655.2	23	15	EIF5B	9953	chr2:99993099:+	AC104655.2	29553	chr2:105713856:-	ONLY_REF_SPLICE	YES	227	1	0.14	0.97	0.2688	0.1753	EIF5B->chr2:99953816-100017789:+,eukaryotic_translation_initiation_factor_5B,AC104655.2->chr2:105713510-105719402:-	HS729_SOFT_TISSUE	0.14	0.97	0.4441	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	B4GALT5--ARNTL	24	8	B4GALT5	1303	chr20:48330113:-	ARNTL	40128	chr11:13408143:+	ONLY_REF_SPLICE	YES	12	30	0.73	0.52	0.2804	0.0935	B4GALT5->Oncogene{Bushman},beta-1,4-galactosyltransferase_5,chr20:48249482-48330415:-,ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+	HS729_SOFT_TISSUE	0.52	0.73	0.3739	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	DNAJC3--GPC6	23	12	DNAJC3	8733	chr13:96416207:+	GPC6	20843	chr13:94197516:+	ONLY_REF_SPLICE	YES	103	43	0.25	0.45	0.2688	0.1402	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,GPC6->chr13:93879095-95059655:+,glypican_6	HS729_SOFT_TISSUE	0.25	0.45	0.409	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ELL--SSBP4	24	6	ELL	1207	chr19:18632731:-	SSBP4	22531	chr19:18538161:+	ONLY_REF_SPLICE	YES	47	17	0.39	0.64	0.2804	0.0701	LOCAL_INVERSION:-:+:[8101],ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,SSBP4->Oncogene{Bushman},chr19:18529674-18545372:+,single_stranded_DNA_binding_protein_4	HS729_SOFT_TISSUE	0.39	0.64	0.3505	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	STAG1--PLS1	23	8	STAG1	21977	chr3:136152398:-	PLS1	64921	chr3:142422710:+	ONLY_REF_SPLICE	YES	35	12	0.47	0.72	0.2688	0.0935	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,PLS1->chr3:142315229-142432506:+,plastin_1	HS729_SOFT_TISSUE	0.47	0.72	0.3623	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	VPS13C--AF146191.4	22	12	VPS13C	27755	chr15:62264824:-	AF146191.4	100385	chr4:190742819:-	ONLY_REF_SPLICE	YES	3	0	0.92	1	0.2571	0.1402	VPS13C->chr15:62144588-62352672:-,vacuolar_protein_sorting_13_homolog_C,AF146191.4->chr4:190701490-190861426:-	HS729_SOFT_TISSUE	0.92	1	0.3973	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	FAM131A--SOX2-OT	19	20	FAM131A	2393	chr3:184055159:+	SOX2-OT	37225	chr3:181457357:+	ONLY_REF_SPLICE	YES	23	0	0.63	1	0.222	0.2337	FAM131A->chr3:184053714-184064063:+,family_with_sequence_similarity_131_member_A,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	HS729_SOFT_TISSUE	0.63	1	0.4557	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	FAM131A--SOX2-OT	19	18	FAM131A	1198	chr3:184053911:+	SOX2-OT	37225	chr3:181457357:+	ONLY_REF_SPLICE	YES	24	0	0.61	1	0.222	0.2103	FAM131A->chr3:184053714-184064063:+,family_with_sequence_similarity_131_member_A,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	HS729_SOFT_TISSUE	0.61	1	0.4323	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CUL1--OPN1SW	22	2	CUL1	2116	chr7:148396121:+	OPN1SW	25925	chr7:128413942:-	ONLY_REF_SPLICE	YES	60	6	0.29	0.8	0.2571	0.0234	CUL1->Oncogene{Bushman},chr7:148395006-148498128:+,cullin_1,OPN1SW->chr7:128412545-128415844:-,opsin_1_(cone_pigments),_short-wave-sensitive	HS729_SOFT_TISSUE	0.29	0.8	0.2805	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EXOSC3--MYRIP	4	69	EXOSC3	3452	chr9:37784381:-	MYRIP	19427	chr3:40192539:+	ONLY_REF_SPLICE	YES	77	0	0.49	1	0.0467	0.8063	EXOSC3->chr9:37766975-37801434:-,exosome_component_3,MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein	HS729_SOFT_TISSUE	0.49	1	0.853	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	PTPN23--PFKFB4	19	5	PTPN23	2245	chr3:47437707:+	PFKFB4	24581	chr3:48577204:-	ONLY_REF_SPLICE	YES	49	21	0.33	0.53	0.222	0.0584	PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23,PFKFB4->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_4,chr3:48555117-48599448:-	HS729_SOFT_TISSUE	0.33	0.53	0.2804	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RASA2--ADIPOR2	15	15	RASA2	17968	chr3:141299293:+	ADIPOR2	40404	chr12:1887020:+	ONLY_REF_SPLICE	YES	15	72	0.67	0.29	0.1753	0.1753	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	HS729_SOFT_TISSUE	0.29	0.67	0.3506	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TOM1L2--PIGL	16	8	TOM1L2	1161	chr17:17875576:-	PIGL	43966	chr17:16250859:+	ONLY_REF_SPLICE	YES	84	8	0.22	0.75	0.187	0.0935	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	HS729_SOFT_TISSUE	0.22	0.75	0.2805	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	NCEH1--YEATS2	15	2	NCEH1	1372	chr3:172428637:-	YEATS2	21679	chr3:183465460:+	ONLY_REF_SPLICE	YES	33	24	0.34	0.41	0.1753	0.0234	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	HS729_SOFT_TISSUE	0.34	0.41	0.1987	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MKLN1-AS1--RP11-573J24.1	14	4	MKLN1-AS1	13605	chr7:130630479:-	RP11-573J24.1	21407	chr8:64501381:+	ONLY_REF_SPLICE	YES	21	0	0.46	1	0.1636	0.0467	MKLN1-AS1->chr7:130626519-130794935:-,RP11-573J24.1->chr8:64498558-64501966:+	HS729_SOFT_TISSUE	0.46	1	0.2103	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ATP2B2--GRM7	13	3	ATP2B2	3257	chr3:10575723:-	GRM7	62789	chr3:7721736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1519	0.0351	ATP2B2->ATPase_plasma_membrane_Ca2+_transporting_2,chr3:10365707-10749716:-,GRM7->chr3:6811688-7783215:+,glutamate_metabotropic_receptor_7	HS729_SOFT_TISSUE	1	1	0.187	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	NCEH1--ZMAT3	10	12	NCEH1	1372	chr3:172428637:-	ZMAT3	16089	chr3:178748787:-	ONLY_REF_SPLICE	YES	33	7	0.4	0.76	0.1169	0.1402	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,ZMAT3->chr3:178735011-178790067:-,zinc_finger_matrin-type_3	HS729_SOFT_TISSUE	0.4	0.76	0.2571	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ARHGEF10--RP11-223C24.1	12	0	ARHGEF10	3311	chr8:1791602:+	RP11-223C24.1	44288	chr4:143504605:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1402	0	ARHGEF10->Rho_guanine_nucleotide_exchange_factor_10,chr8:1772142-1906807:+,RP11-223C24.1->chr4:143487172-143582103:+	HS729_SOFT_TISSUE	1	1	0.1402	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MIR4435-1HG--PLGLB1	7	18	MIR4435-1HG	1216	chr2:112252462:-	PLGLB1	33083	chr2:87244811:-	ONLY_REF_SPLICE	YES	319	3	0.07	0.89	0.0818	0.2103	MIR4435-1HG->chr2:111953927-112252677:-,PLGLB1->chr2:87229682-87248975:-,plasminogen-like_B1	HS729_SOFT_TISSUE	0.07	0.89	0.2921	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	YEATS2--ZMAT3	11	0	YEATS2	9915	chr3:183465504:+	ZMAT3	44727	chr3:178748787:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1285	0	YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+,ZMAT3->chr3:178735011-178790067:-,zinc_finger_matrin-type_3	HS729_SOFT_TISSUE	1	1	0.1285	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CACHD1--RP4-794H19.1	9	7	CACHD1	9416	chr1:65095164:+	RP4-794H19.1	37258	chr1:59361681:-	ONLY_REF_SPLICE	YES	9	0	0.64	1	0.1052	0.0818	CACHD1->cache_domain_containing_1,chr1:64936428-65158741:+,RP4-794H19.1->chr1:59348540-59362375:-	HS729_SOFT_TISSUE	0.64	1	0.187	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	DAGLB--MSRA	9	6	DAGLB	18413	chr7:6449761:-	MSRA	26707	chr8:10065343:+	ONLY_REF_SPLICE	YES	64	7	0.19	0.68	0.1052	0.0701	DAGLB->chr7:6448757-6523821:-,diacylglycerol_lipase_beta,MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A	HS729_SOFT_TISSUE	0.19	0.68	0.1753	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	QKI--SECTM1	2	34	QKI	2336	chr6:163836367:+	SECTM1	32276	chr17:80287342:-	ONLY_REF_SPLICE	YES	71	10	0.34	0.78	0.0234	0.3973	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,SECTM1->chr17:80278900-80291950:-,secreted_and_transmembrane_1	HS729_SOFT_TISSUE	0.34	0.78	0.4207	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ITGB8--ABCB5	8	9	ITGB8	12750	chr7:20421508:+	ABCB5	61619	chr7:20795050:+	ONLY_REF_SPLICE	YES	30	7	0.36	0.71	0.0935	0.1052	ITGB8->chr7:20370325-20455377:+,integrin_subunit_beta_8,ABCB5->ATP_binding_cassette_subfamily_B_member_5,Oncogene{Bushman},chr7:20654830-20816658:+	HS729_SOFT_TISSUE	0.36	0.71	0.1987	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MPRIP--RP11-434D9.1	10	1	MPRIP	4886	chr17:16981390:+	RP11-434D9.1	53087	chr5:67070826:+	ONLY_REF_SPLICE	YES	236	0	0.04	1	0.1169	0.0117	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,RP11-434D9.1->chr5:66675206-67101066:+	HS729_SOFT_TISSUE	0.04	1	0.1286	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TNS3--CTA-293F17.1	10	0	TNS3	1508	chr7:47621649:-	CTA-293F17.1	49995	chr7:20369136:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1169	0	TNS3->chr7:47314752-47622156:-,tensin_3,CTA-293F17.1->chr7:20367922-20371370:-	HS729_SOFT_TISSUE	1	1	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RP4-794H19.4--AK5	9	2	RP4-794H19.4	2191	chr1:59487249:+	AK5	12173	chr1:77752626:+	ONLY_REF_SPLICE	YES	3	131	0.79	0.08	0.1052	0.0234	RP4-794H19.4->chr1:59486059-59510286:+,AK5->adenylate_kinase_5,chr1:77747736-78025651:+	HS729_SOFT_TISSUE	0.08	0.79	0.1286	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CDK13--AC004485.3	8	5	CDK13	10205	chr7:40087476:+	AC004485.3	26360	chr7:24236648:-	ONLY_REF_SPLICE	YES	51	0	0.2	1	0.0935	0.0584	CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,AC004485.3->chr7:24236281-24295338:-	HS729_SOFT_TISSUE	0.2	1	0.1519	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZNF578--CTC-512J12.6	8	2	ZNF578	4383	chr19:52960211:+	CTC-512J12.6	18286	chr19:44844694:-	INCL_NON_REF_SPLICE	YES	28	0	0.26	1	0.0935	0.0234	PROTCLUST,ZNF578->chr19:52956829-53015407:+,zinc_finger_protein_578,CTC-512J12.6->chr19:44833848-44905774:-	HS729_SOFT_TISSUE	0.26	1	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CLDN10--IGH@	8	1	CLDN10	4025	chr13:96212717:+	IGH@	11214	chr14:107283096:-	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0935	0.0117	CLDN10->chr13:96085858-96232013:+,claudin_10,IGH@->Oncogene{Bushman}	HS729_SOFT_TISSUE	0.82	1	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	NCLN--UCK2	7	5	NCLN	10481	chr19:3206423:+	UCK2	18034	chr1:165859441:+	ONLY_REF_SPLICE	YES	136	59	0.08	0.17	0.0818	0.0584	NCLN->chr19:3185561-3209573:+,nicalin,UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2	HS729_SOFT_TISSUE	0.08	0.17	0.1402	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	SAFB--CTD-2311B13.5	8	0	SAFB	2445	chr19:5626500:+	CTD-2311B13.5	23590	chr14:19564808:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0935	0	SAFB->chr19:5623046-5668489:+,scaffold_attachment_factor_B,CTD-2311B13.5->chr14:19562689-19566731:-	HS729_SOFT_TISSUE	1	1	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	STAG1--PLS1	5	12	STAG1	21977	chr3:136152398:-	PLS1	63435	chr3:142416795:+	ONLY_REF_SPLICE	YES	35	7	0.33	0.71	0.0584	0.1402	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,PLS1->chr3:142315229-142432506:+,plastin_1	HS729_SOFT_TISSUE	0.33	0.71	0.1986	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EXOSC3--MYRIP	1	27	EXOSC3	3115	chr9:37784718:-	MYRIP	20564	chr3:40204221:+	ONLY_REF_SPLICE	YES	71	7	0.28	0.8	0.0117	0.3155	EXOSC3->chr9:37766975-37801434:-,exosome_component_3,MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein	HS729_SOFT_TISSUE	0.28	0.8	0.3272	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TCF12--U66059.29	7	3	TCF12	3439	chr15:57213296:+	U66059.29	43226	chr7:141971897:-	INCL_NON_REF_SPLICE	YES	68	0	0.13	1	0.0818	0.0351	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,U66059.29->chr7:141965650-141972054:-	HS729_SOFT_TISSUE	0.13	1	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	JARID2--CTC-436P18.3	7	2	JARID2	3478	chr6:15374483:+	CTC-436P18.3	31749	chr5:60497531:-	ONLY_REF_SPLICE	YES	14	0	0.39	1	0.0818	0.0234	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,CTC-436P18.3->chr5:60497136-60560756:-	HS729_SOFT_TISSUE	0.39	1	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ASB7--TBRG4	6	5	ASB7	4324	chr15:101152632:+	TBRG4	15869	chr7:45148886:-	ONLY_REF_SPLICE	YES	8	1	0.58	0.92	0.0701	0.0584	ASB7->ankyrin_repeat_and_SOCS_box_containing_7,chr15:101142739-101191910:+,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	HS729_SOFT_TISSUE	0.58	0.92	0.1285	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TSC22D2--RP11-167H9.4	7	1	TSC22D2	3974	chr3:150129095:+	RP11-167H9.4	23098	chr3:149842725:+	ONLY_REF_SPLICE	YES	82	0	0.09	1	0.0818	0.0117	TSC22D2->TSC22_domain_family_member_2,chr3:150126122-150184218:+,RP11-167H9.4->chr3:149757001-149931513:+	HS729_SOFT_TISSUE	0.09	1	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CAMTA1--ZBTB14	7	0	CAMTA1	13213	chr1:7309686:+	ZBTB14	44605	chr18:5293326:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0818	0	CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,ZBTB14->chr18:5289018-5297052:-,zinc_finger_and_BTB_domain_containing_14	HS729_SOFT_TISSUE	1	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MIR4435-1HG--PLGLB1	2	20	MIR4435-1HG	2571	chr2:112237484:-	PLGLB1	33083	chr2:87244811:-	ONLY_REF_SPLICE	NO	328	3	0.06	0.88	0.0234	0.2337	MIR4435-1HG->chr2:111953927-112252677:-,PLGLB1->chr2:87229682-87248975:-,plasminogen-like_B1	HS729_SOFT_TISSUE	0.06	0.88	0.2571	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MIR4435-1HG--PLGLB1	1	21	MIR4435-1HG	14499	chr2:112101638:-	PLGLB1	33083	chr2:87244811:-	ONLY_REF_SPLICE	YES	32	3	0.41	0.88	0.0117	0.2454	MIR4435-1HG->chr2:111953927-112252677:-,PLGLB1->chr2:87229682-87248975:-,plasminogen-like_B1	HS729_SOFT_TISSUE	0.41	0.88	0.2571	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	SUPT6H--CKMT2	6	1	SUPT6H	17212	chr17:27015236:+	CKMT2	34870	chr5:80546932:+	ONLY_REF_SPLICE	YES	137	0	0.05	1	0.0701	0.0117	SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+,CKMT2->chr5:80529104-80562216:+,creatine_kinase,_mitochondrial_2	HS729_SOFT_TISSUE	0.05	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TMEM135--GRM5-AS1	6	1	TMEM135	4604	chr11:86802437:+	GRM5-AS1	31079	chr11:88244919:+	ONLY_REF_SPLICE	YES	33	0	0.17	1	0.0701	0.0117	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,GRM5-AS1->GRM5_antisense_RNA_1,chr11:88237744-88257222:+	HS729_SOFT_TISSUE	0.17	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ANAPC1--PSD4	5	4	ANAPC1	24211	chr2:112582543:-	PSD4	76286	chr2:113965899:+	INCL_NON_REF_SPLICE	YES	35	0	0.2	1	0.0584	0.0467	ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-,PSD4->chr2:113914902-113966973:+,pleckstrin_and_Sec7_domain_containing_4	HS729_SOFT_TISSUE	0.2	1	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	SAFB--CTD-2311B13.5	6	0	SAFB	2445	chr19:5626500:+	CTD-2311B13.5	22532	chr14:19566343:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	SAFB->chr19:5623046-5668489:+,scaffold_attachment_factor_B,CTD-2311B13.5->chr14:19562689-19566731:-	HS729_SOFT_TISSUE	1	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZC3H7A--DDX11L2	6	0	ZC3H7A	1144	chr16:11890980:-	DDX11L2	28498	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	HS729_SOFT_TISSUE	1	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	COQ7--MKL2	5	3	COQ7	2280	chr16:19080200:+	MKL2	16280	chr16:14234401:+	ONLY_REF_SPLICE	YES	29	4	0.22	0.67	0.0584	0.0351	COQ7->chr16:19078921-19091417:+,coenzyme_Q7,_hydroxylase,MKL2->MKL1/myocardin_like_2,chr16:14165178-14360630:+	HS729_SOFT_TISSUE	0.22	0.67	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EIF5B--AC104655.2	1	19	EIF5B	9953	chr2:99993099:+	AC104655.2	27651	chr2:105715758:-	ONLY_REF_SPLICE	YES	227	0	0.08	1	0.0117	0.222	EIF5B->chr2:99953816-100017789:+,eukaryotic_translation_initiation_factor_5B,AC104655.2->chr2:105713510-105719402:-	HS729_SOFT_TISSUE	0.08	1	0.2337	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	FAM131A--SOX2-OT	1	18	FAM131A	1198	chr3:184053911:+	SOX2-OT	36057	chr3:181454163:+	ONLY_REF_SPLICE	YES	24	0	0.44	1	0.0117	0.2103	FAM131A->chr3:184053714-184064063:+,family_with_sequence_similarity_131_member_A,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	HS729_SOFT_TISSUE	0.44	1	0.222	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	NOP2--MED12L	5	2	NOP2	5819	chr12:6672247:-	MED12L	39876	chr3:151078262:+	ONLY_REF_SPLICE	YES	59	0	0.11	1	0.0584	0.0234	NOP2->NOP2_nucleolar_protein,chr12:6666029-6677857:-,MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like	HS729_SOFT_TISSUE	0.11	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	GPC6--PROSER1	5	1	GPC6	4326	chr13:94482798:+	PROSER1	21530	chr13:39605768:-	ONLY_REF_SPLICE	YES	48	39	0.11	0.13	0.0584	0.0117	GPC6->chr13:93879095-95059655:+,glypican_6,PROSER1->chr13:39584003-39612252:-,proline_and_serine_rich_1	HS729_SOFT_TISSUE	0.11	0.13	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	KIF15--MBP	4	5	KIF15	26714	chr3:44872510:+	MBP	59644	chr18:74702016:-	ONLY_REF_SPLICE	YES	28	1	0.24	0.9	0.0467	0.0584	GTEx&tcga_normals:1/3694=0.03%,KIF15->chr3:44803209-44914868:+,kinesin_family_member_15,MBP->chr18:74690783-74845639:-,myelin_basic_protein	HS729_SOFT_TISSUE	0.24	0.9	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TET3--RHOT1	5	1	TET3	11163	chr2:74320793:+	RHOT1	45890	chr17:30551635:+	ONLY_REF_SPLICE	YES	22	85	0.21	0.07	0.0584	0.0117	TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	HS729_SOFT_TISSUE	0.07	0.21	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZNF197-AS1--SMAD4	4	5	ZNF197-AS1	1076	chr3:44666214:-	SMAD4	20344	chr18:48584495:+	ONLY_REF_SPLICE	YES	0	150	1	0.06	0.0467	0.0584	ZNF197-AS1->ZNF197_antisense_RNA_1,chr3:44658620-44666289:-,SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+	HS729_SOFT_TISSUE	0.06	1	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RAD18--PQLC1	5	0	RAD18	1439	chr3:9005019:-	PQLC1	36900	chr18:77679400:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0584	0	RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,PQLC1->PQ_loop_repeat_containing_1,chr18:77662420-77711664:-	HS729_SOFT_TISSUE	1	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CLOCK--HTR4	4	3	CLOCK	1357	chr4:56412949:-	HTR4	46939	chr5:147929825:-	ONLY_REF_SPLICE	YES	5	0	0.58	1	0.0467	0.0351	CLOCK->chr4:56294070-56413305:-,clock_circadian_regulator,HTR4->5-hydroxytryptamine_receptor_4,chr5:147830595-148056798:-	HS729_SOFT_TISSUE	0.58	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	QKI--SECTM1	1	15	QKI	2336	chr6:163836367:+	SECTM1	35596	chr17:80282766:-	ONLY_REF_SPLICE	YES	71	40	0.18	0.29	0.0117	0.1753	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,SECTM1->chr17:80278900-80291950:-,secreted_and_transmembrane_1	HS729_SOFT_TISSUE	0.18	0.29	0.187	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TOM1L2--PIGL	3	7	TOM1L2	1161	chr17:17875576:-	PIGL	43971	chr17:16250864:+	INCL_NON_REF_SPLICE	YES	84	8	0.11	0.56	0.0351	0.0818	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	HS729_SOFT_TISSUE	0.11	0.56	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ARID2--PARD6G	4	2	ARID2	2571	chr12:46125097:+	PARD6G	34285	chr18:77960815:-	ONLY_REF_SPLICE	YES	15	4	0.29	0.6	0.0467	0.0234	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,PARD6G->chr18:77915115-78005429:-,par-6_family_cell_polarity_regulator_gamma	HS729_SOFT_TISSUE	0.29	0.6	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	LIMK1--GNGT1	4	2	LIMK1	3210	chr7:73500174:+	GNGT1	25372	chr7:93536051:+	INCL_NON_REF_SPLICE	YES	15	0	0.29	1	0.0467	0.0234	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+	HS729_SOFT_TISSUE	0.29	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	LIMK1--GNGT1	4	2	LIMK1	3210	chr7:73500174:+	GNGT1	25369	chr7:93536048:+	ONLY_REF_SPLICE	YES	15	0	0.29	1	0.0467	0.0234	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+	HS729_SOFT_TISSUE	0.29	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MPV17L2--SYCE2	4	2	MPV17L2	2905	chr19:18305896:+	SYCE2	11004	chr19:13015480:-	ONLY_REF_SPLICE	YES	112	13	0.05	0.32	0.0467	0.0234	MPV17L2->MPV17_mitochondrial_inner_membrane_protein_like_2,chr19:18303992-18307758:+,SYCE2->chr19:13009600-13030090:-,synaptonemal_complex_central_element_protein_2	HS729_SOFT_TISSUE	0.05	0.32	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RP11-695J4.2--STK38L	4	2	RP11-695J4.2	1443	chr12:14721126:+	STK38L	16585	chr12:27461272:+	ONLY_REF_SPLICE	YES	1	85	0.86	0.07	0.0467	0.0234	RP11-695J4.2->chr12:14720684-14772689:+,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	HS729_SOFT_TISSUE	0.07	0.86	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	COQ7--MKL2	4	1	COQ7	1139	chr16:19079059:+	MKL2	16280	chr16:14234401:+	ONLY_REF_SPLICE	YES	20	4	0.2	0.56	0.0467	0.0117	COQ7->chr16:19078921-19091417:+,coenzyme_Q7,_hydroxylase,MKL2->MKL1/myocardin_like_2,chr16:14165178-14360630:+	HS729_SOFT_TISSUE	0.2	0.56	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CTGF--RPS28	4	0	CTGF	1159	chr6:132272355:-	RPS28	7541	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0467	0	GTEx&tcga_normals:1/3694=0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HS729_SOFT_TISSUE	1	1	0.0467	TRUE	0	0	0	5	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TNS3--CTA-293F17.1	4	0	TNS3	1508	chr7:47621649:-	CTA-293F17.1	49726	chr7:20369405:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0467	0	TNS3->chr7:47314752-47622156:-,tensin_3,CTA-293F17.1->chr7:20367922-20371370:-	HS729_SOFT_TISSUE	1	1	0.0467	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	GTF3C4--ADAMTS13	3	3	GTF3C4	4748	chr9:135555190:+	ADAMTS13	20499	chr9:136289441:+	ONLY_REF_SPLICE	YES	67	3	0.08	0.67	0.0351	0.0351	GTF3C4->chr9:135545422-135570342:+,general_transcription_factor_IIIC_subunit_4,ADAMTS13->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_13,chr9:136279478-136324508:+	HS729_SOFT_TISSUE	0.08	0.67	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ITGB8--ABCB5	3	3	ITGB8	11696	chr7:20420454:+	ABCB5	60472	chr7:20792983:+	ONLY_REF_SPLICE	YES	27	0	0.18	1	0.0351	0.0351	ITGB8->chr7:20370325-20455377:+,integrin_subunit_beta_8,ABCB5->ATP_binding_cassette_subfamily_B_member_5,Oncogene{Bushman},chr7:20654830-20816658:+	HS729_SOFT_TISSUE	0.18	1	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	NFASC--CD9	2	7	NFASC	1132	chr1:204797910:+	CD9	60079	chr12:6334592:+	ONLY_REF_SPLICE	YES	0	125	1	0.07	0.0234	0.0818	NFASC->chr1:204797779-204991950:+,neurofascin,CD9->CD9_molecule,Oncogene{Bushman},chr12:6308881-6347425:+	HS729_SOFT_TISSUE	0.07	1	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CACHD1--RP4-794H19.1	3	2	CACHD1	7258	chr1:65068595:+	RP4-794H19.1	37258	chr1:59361681:-	ONLY_REF_SPLICE	NO	20	0	0.2	1	0.0351	0.0234	CACHD1->cache_domain_containing_1,chr1:64936428-65158741:+,RP4-794H19.1->chr1:59348540-59362375:-	HS729_SOFT_TISSUE	0.2	1	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RAD52--RP11-64D22.5	3	2	RAD52	1245	chr12:1098975:-	RP11-64D22.5	18906	chr3:151521494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0.0234	RAD52->Oncogene{Bushman},RAD52_homolog,_DNA_repair_protein,chr12:1021243-1099219:-,RP11-64D22.5->chr3:151515272-151526037:+	HS729_SOFT_TISSUE	1	1	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZDHHC3--MIR1302-10	2	6	ZDHHC3	7478	chr3:44974610:-	MIR1302-10	21914	chr15:102500601:-	ONLY_REF_SPLICE	YES	171	0	0.04	1	0.0234	0.0701	ZDHHC3->Oncogene{Bushman},chr3:44956749-45017677:-,zinc_finger_DHHC-type_containing_3,MIR1302-10->chr15:102500051-102501611:-,microRNA_1302-10	HS729_SOFT_TISSUE	0.04	1	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	GLCCI1--BMPER	3	1	GLCCI1	8900	chr7:8099878:+	BMPER	43007	chr7:34182842:+	ONLY_REF_SPLICE	YES	11	26	0.27	0.13	0.0351	0.0117	GLCCI1->chr7:8008425-8133902:+,glucocorticoid_induced_1,BMPER->BMP_binding_endothelial_regulator,chr7:33944523-34195484:+	HS729_SOFT_TISSUE	0.13	0.27	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	PQLC1--DCLK3	3	1	PQLC1	14051	chr18:77679184:-	DCLK3	28408	chr3:36757012:-	ONLY_REF_SPLICE	YES	41	9	0.09	0.31	0.0351	0.0117	PQLC1->PQ_loop_repeat_containing_1,chr18:77662420-77711664:-,DCLK3->chr3:36753913-36781352:-,doublecortin_like_kinase_3	HS729_SOFT_TISSUE	0.09	0.31	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TMEM135--GRM5-AS1	3	1	TMEM135	3570	chr11:86782657:+	GRM5-AS1	31079	chr11:88244919:+	ONLY_REF_SPLICE	YES	30	0	0.12	1	0.0351	0.0117	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,GRM5-AS1->GRM5_antisense_RNA_1,chr11:88237744-88257222:+	HS729_SOFT_TISSUE	0.12	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZDHHC3--MIR1302-10	2	5	ZDHHC3	7689	chr3:44974399:-	MIR1302-10	22330	chr15:102500185:-	ONLY_REF_SPLICE	YES	169	0	0.04	1	0.0234	0.0584	ZDHHC3->Oncogene{Bushman},chr3:44956749-45017677:-,zinc_finger_DHHC-type_containing_3,MIR1302-10->chr15:102500051-102501611:-,microRNA_1302-10	HS729_SOFT_TISSUE	0.04	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	COL16A1--COL1A1	3	0	COL16A1	26222	chr1:32137216:-	COL1A1	60524	chr17:48264898:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS729_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CTGF--S100A6	3	0	CTGF	1143	chr6:132272371:-	S100A6	7448	chr1:153508471:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HS729_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	2	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	DCC--RNF165	3	0	DCC	1707	chr18:49867248:+	RNF165	60121	chr18:44027526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	DCC->DCC_netrin_1_receptor,Oncogene{Bushman},chr18:49866542-51057784:+,RNF165->chr18:43906772-44043103:+,ring_finger_protein_165	HS729_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	JARID2--SMIM15	1	8	JARID2	2342	chr6:15249195:+	SMIM15	28224	chr5:60458186:-	ONLY_REF_SPLICE	YES	30	4	0.23	0.69	0.0117	0.0935	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,SMIM15->chr5:60453536-60458301:-,small_integral_membrane_protein_15	HS729_SOFT_TISSUE	0.23	0.69	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	PDZD2--DROSHA	3	0	PDZD2	23443	chr5:32061240:+	DROSHA	81047	chr5:31424578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	PDZD2->PDZ_domain_containing_2,chr5:31639517-32111037:+,DROSHA->chr5:31400604-31532303:-,drosha_ribonuclease_III	HS729_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RAD18--DCLK3	3	0	RAD18	1439	chr3:9005019:-	DCLK3	31083	chr3:36757012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,DCLK3->chr3:36753913-36781352:-,doublecortin_like_kinase_3	HS729_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ANO2--TRPC3	2	2	ANO2	3594	chr12:6030206:-	TRPC3	44803	chr4:122854197:-	ONLY_REF_SPLICE	YES	13	0	0.24	1	0.0234	0.0234	ANO2->anoctamin_2,chr12:5641035-6055398:-,TRPC3->chr4:122800182-122872909:-,transient_receptor_potential_cation_channel_subfamily_C_member_3	HS729_SOFT_TISSUE	0.24	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	UTY--DOCK5	2	2	UTY	29146	chrY:15409587:-	DOCK5	38444	chr8:25101190:+	ONLY_REF_SPLICE	YES	12	9	0.25	0.31	0.0234	0.0234	UTY->chrY:15360259-15592553:-,ubiquitously_transcribed_tetratricopeptide_repeat_containing,_Y-linked,DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5	HS729_SOFT_TISSUE	0.25	0.31	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZDHHC3--MIR1302-10	1	6	ZDHHC3	7689	chr3:44974399:-	MIR1302-10	21914	chr15:102500601:-	ONLY_REF_SPLICE	YES	169	0	0.04	1	0.0117	0.0701	ZDHHC3->Oncogene{Bushman},chr3:44956749-45017677:-,zinc_finger_DHHC-type_containing_3,MIR1302-10->chr15:102500051-102501611:-,microRNA_1302-10	HS729_SOFT_TISSUE	0.04	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	LIMK1--AC002076.10	2	1	LIMK1	3210	chr7:73500174:+	AC002076.10	24065	chr7:93522554:+	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0234	0.0117	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,AC002076.10->chr7:93520225-93522913:+	HS729_SOFT_TISSUE	0.17	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	PRKAR1B--WRN	2	1	PRKAR1B	9970	chr7:720193:-	WRN	49084	chr8:30998946:+	ONLY_REF_SPLICE	YES	13	17	0.19	0.15	0.0234	0.0117	PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta,WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+	HS729_SOFT_TISSUE	0.15	0.19	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	PRKAR1B--WRN	2	1	PRKAR1B	11062	chr7:716866:-	WRN	49084	chr8:30998946:+	ONLY_REF_SPLICE	YES	17	17	0.15	0.15	0.0234	0.0117	PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta,WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+	HS729_SOFT_TISSUE	0.15	0.15	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	SLCO3A1--ASB5	2	1	SLCO3A1	13963	chr15:92671719:+	ASB5	31981	chr4:177190348:-	ONLY_REF_SPLICE	YES	14	0	0.18	1	0.0234	0.0117	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,ASB5->ankyrin_repeat_and_SOCS_box_containing_5,chr4:177134824-177198722:-	HS729_SOFT_TISSUE	0.18	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TSC22D2--RP11-167H9.6	2	1	TSC22D2	3974	chr3:150129095:+	RP11-167H9.6	20194	chr3:149956722:+	ONLY_REF_SPLICE	YES	82	1	0.04	0.75	0.0234	0.0117	TSC22D2->TSC22_domain_family_member_2,chr3:150126122-150184218:+,RP11-167H9.6->chr3:149956306-149957996:+	HS729_SOFT_TISSUE	0.04	0.75	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	AP003419.11--CORO1B	2	0	AP003419.11	1061	chr11:67140995:-	CORO1B	7759	chr11:67210101:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	LOCAL_REARRANGEMENT:-:[64464],AP003419.11->chr11:67119043-67141055:-,CORO1B->chr11:67205519-67211292:-,coronin_1B	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	BMPER--CPVL	2	0	BMPER	21437	chr7:34182972:+	CPVL	42804	chr7:29112039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	BMPER->BMP_binding_endothelial_regulator,chr7:33944523-34195484:+,CPVL->carboxypeptidase,_vitellogenic_like,chr7:29034847-29235067:-	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CHSY3--CTD-2410N18.5	2	0	CHSY3	3444	chr5:129244053:+	CTD-2410N18.5	12251	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,CTD-2410N18.5->chr5:133502861-133561762:-	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	1	0	0	2	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CKAP5--AES	2	0	CKAP5	7383	chr11:46832557:-	AES	47597	chr19:3061255:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5,AES->amino-terminal_enhancer_of_split,chr19:3052908-3063105:-	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EML1--MSH2	2	0	EML1	1168	chr14:100204197:+	MSH2	49011	chr2:47672687:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1,MSH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47630108-47789450:+,mutS_homolog_2	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EXOSC3--MYRIP	2	0	EXOSC3	1771	chr9:37800664:-	MYRIP	19427	chr3:40192539:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	EXOSC3->chr9:37766975-37801434:-,exosome_component_3,MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	PPP4R1L--GNAS	2	0	PPP4R1L	1214	chr20:56884282:-	GNAS	41042	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene),GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ASB7--TBRG4	1	2	ASB7	4324	chr15:101152632:+	TBRG4	15913	chr7:45148842:-	ONLY_REF_SPLICE	YES	8	13	0.27	0.19	0.0117	0.0234	ASB7->ankyrin_repeat_and_SOCS_box_containing_7,chr15:101142739-101191910:+,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	HS729_SOFT_TISSUE	0.19	0.27	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TNKS--ZNF595	1	2	TNKS	9191	chr8:9473187:+	ZNF595	50027	chr4:59323:+	ONLY_REF_SPLICE	YES	30	19	0.09	0.14	0.0117	0.0234	TNKS->chr8:9413424-9639856:+,tankyrase,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	HS729_SOFT_TISSUE	0.09	0.14	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZNF627--MARCH2	1	2	ZNF627	6303	chr19:11708445:+	MARCH2	17123	chr19:8483626:+	ONLY_REF_SPLICE	YES	25	15	0.11	0.17	0.0117	0.0234	ZNF627->chr19:11670189-11729950:+,zinc_finger_protein_627,MARCH2->chr19:8478154-8503901:+,membrane_associated_ring-CH-type_finger_2	HS729_SOFT_TISSUE	0.11	0.17	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CACHD1--RP4-794H19.1	1	1	CACHD1	9416	chr1:65095164:+	RP4-794H19.1	39483	chr1:59349406:-	ONLY_REF_SPLICE	YES	9	8	0.18	0.2	0.0117	0.0117	CACHD1->cache_domain_containing_1,chr1:64936428-65158741:+,RP4-794H19.1->chr1:59348540-59362375:-	HS729_SOFT_TISSUE	0.18	0.2	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CPPED1--CTD-3088G3.8	1	1	CPPED1	4167	chr16:12798481:-	CTD-3088G3.8	16183	chr16:11602711:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0117	0.0117	CPPED1->calcineurin_like_phosphoesterase_domain_containing_1,chr16:12756919-12897874:-,CTD-3088G3.8->chr16:11453702-11617444:-	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EVI5--RP11-436K8.1	1	1	EVI5	15736	chr1:93128276:-	RP11-436K8.1	33271	chr1:61199194:-	ONLY_REF_SPLICE	YES	42	0	0.05	1	0.0117	0.0117	EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5,RP11-436K8.1->chr1:61125303-61291256:-	HS729_SOFT_TISSUE	0.05	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MPRIP--CCDC144A	1	1	MPRIP	1427	chr17:16946285:+	CCDC144A	70454	chr17:16664739:+	ONLY_REF_SPLICE	YES	28	10	0.07	0.17	0.0117	0.0117	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,CCDC144A->chr17:16592851-16707767:+,coiled-coil_domain_containing_144A	HS729_SOFT_TISSUE	0.07	0.17	0.0234	TRUE	0	1	0	1	1	TRUE	ACH-000133
HS729_SOFT_TISSUE	ULK4--SUSD5	1	1	ULK4	36764	chr3:41657160:-	SUSD5	54367	chr3:33195525:-	ONLY_REF_SPLICE	YES	5	15	0.29	0.12	0.0117	0.0117	ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4,SUSD5->chr3:33191537-33260707:-,sushi_domain_containing_5	HS729_SOFT_TISSUE	0.12	0.29	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
SKNEP1_BONE	EWSR1--FLI1	201	126	EWSR1	11554	chr22:29683123:+	FLI1	35098	chr11:128651853:+	ONLY_REF_SPLICE	YES	424	0	0.44	1	3.2175	2.017	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKNEP1_BONE	0.44	1	5.2345	TRUE	0	0	0	5	0	TRUE	ACH-001192
SKNEP1_BONE	RCC1--EEF1D	4	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SKNEP1_BONE	1	1	0.064	TRUE	1	10	0	18	0	TRUE	ACH-001192
SKNEP1_BONE	C17orf76-AS1--FCGRT	2	0	C17orf76-AS1	1593	chr17:16342728:+	FCGRT	21378	chr19:50027764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	C17orf76-AS1->chr17:16342136-16381992:+,FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+	SKNEP1_BONE	1	1	0.032	TRUE	0	0	0	3	0	TRUE	ACH-001192
SKNEP1_BONE	SLCO4A1--WHSC1	2	0	SLCO4A1	1109	chr20:61273905:+	WHSC1	24296	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	SKNEP1_BONE	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-001192
SKNEP1_BONE	TCF3--DAZAP1	2	0	TCF3	4502	chr19:1646354:-	DAZAP1	26339	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	SKNEP1_BONE	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-001192
SKNEP1_BONE	UBAP2L--ADAR	2	0	UBAP2L	1797	chr1:154193451:+	ADAR	35962	chr1:154575102:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like,ADAR->adenosine_deaminase,_RNA-specific,chr1:154554538-154600475:-	SKNEP1_BONE	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-001192
LK2_LUNG	IMMT--SPOCK2	9	3	IMMT	8334	chr2:86393631:-	SPOCK2	32483	chr10:73822663:-	ONLY_REF_SPLICE	YES	292	2	0.04	0.86	0.1353	0.0451	IMMT->chr2:86371055-86422893:-,inner_membrane_mitochondrial_protein,SPOCK2->chr10:73818793-73848790:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_2	LK2_LUNG	0.04	0.86	0.1804	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	CA8--YTHDF3	2	0	CA8	3682	chr8:61178484:-	YTHDF3	27122	chr8:64122241:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-,YTHDF3->YTH_N6-methyladenosine_RNA_binding_protein_3,chr8:64081112-64125346:+	LK2_LUNG	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	DDX39B--HNRNPA2B1	2	0	DDX39B	1499	chr6:31509727:-	HNRNPA2B1	18888	chr7:26237352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	LK2_LUNG	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	FAM63B--EPHA6	2	0	FAM63B	7519	chr15:59114018:+	EPHA6	23883	chr3:96585669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,EPHA6->EPH_receptor_A6,chr3:96533425-97471304:+	LK2_LUNG	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	LINC00616--SLC7A11	2	0	LINC00616	8100	chr4:139012097:-	SLC7A11	25553	chr4:139104459:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	LOCAL_REARRANGEMENT:-:[33388],LINC00616->chr4:138948576-139051863:-,long_intergenic_non-protein_coding_RNA_616,SLC7A11->chr4:139085251-139163503:-,solute_carrier_family_7_member_11	LK2_LUNG	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	PEAK1--EXOC4	2	0	PEAK1	2202	chr15:77657505:-	EXOC4	35970	chr7:132990631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	LK2_LUNG	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	SMC4--RNH1	2	0	SMC4	1424	chr3:160117485:+	RNH1	30635	chr11:504996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4,RNH1->chr11:494512-507300:-,ribonuclease/angiogenin_inhibitor_1	LK2_LUNG	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	ERC2--FLNB	1	1	ERC2	1116	chr3:56502276:-	FLNB	37598	chr3:58062773:+	ONLY_REF_SPLICE	YES	10	29	0.17	0.06	0.015	0.015	ERC2->ELKS/RAB6-interacting/CAST_family_member_2,Oncogene{Bushman},chr3:55542336-56502391:-,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	LK2_LUNG	0.06	0.17	0.03	TRUE	0	0	0	1	0	TRUE	ACH-000769
HLFA_FIBROBLAST	COL1A1--COL6A2	32	0	COL1A1	5797	chr17:48273978:-	COL6A2	36137	chr21:47544799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3594	0	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HLFA_FIBROBLAST	1	1	0.3594	TRUE	0	0	0	6	0	TRUE	ACH-000797
HLFA_FIBROBLAST	IGFBP4--S100A6	7	0	IGFBP4	3668	chr17:38610269:+	S100A6	9247	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0786	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HLFA_FIBROBLAST	1	1	0.0786	TRUE	0	0	0	4	0	TRUE	ACH-000797
HLFA_FIBROBLAST	IGFBP4--S100A6	3	0	IGFBP4	3682	chr17:38610283:+	S100A6	9257	chr1:153508460:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HLFA_FIBROBLAST	1	1	0.0337	TRUE	0	0	0	4	0	TRUE	ACH-000797
HLFA_FIBROBLAST	PASD1--PLEC	3	0	PASD1	13972	chrX:150840713:+	PLEC	47014	chr8:144999036:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	PASD1->PAS_domain_containing_1,chrX:150732094-150845211:+,PLEC->chr8:144989321-145050902:-,plectin	HLFA_FIBROBLAST	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000797
HLFA_FIBROBLAST	PRKCSH--LGALS1	3	0	PRKCSH	11051	chr19:11560150:+	LGALS1	15725	chr22:38071655:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	PRKCSH->chr19:11546109-11561783:+,protein_kinase_C_substrate_80K-H,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HLFA_FIBROBLAST	1	1	0.0337	TRUE	0	0	0	3	0	TRUE	ACH-000797
HLFA_FIBROBLAST	B2M--ANXA2	2	0	B2M	1137	chr15:45003811:+	ANXA2	26675	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Colon_-_Sigmoid=1,Colon_-_Transverse=1},B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	HLFA_FIBROBLAST	1	1	0.0225	TRUE	1	1	1	1	0	TRUE	ACH-000797
HLFA_FIBROBLAST	COL1A2--LOXL2	2	0	COL1A2	20345	chr7:94047864:+	LOXL2	41246	chr8:23225947:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,LOXL2->Oncogene{Bushman},chr8:23154702-23282841:-,lysyl_oxidase_like_2	HLFA_FIBROBLAST	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000797
SW579_THYROID	VPS53--GLOD4	57	25	VPS53	3923	chr17:613773:-	GLOD4	56987	chr17:681984:-	ONLY_REF_SPLICE	YES	84	126	0.49	0.39	0.6725	0.295	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[35380],VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	SW579_THYROID	0.39	0.49	0.9675	TRUE	0	2	0	1	1	TRUE	ACH-000163
SW579_THYROID	SKIV2L2--FAM159B	19	2	SKIV2L2	17595	chr5:54654526:+	FAM159B	39997	chr5:64013716:+	ONLY_REF_SPLICE	YES	88	0	0.19	1	0.2242	0.0236	SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+,FAM159B->chr5:63986135-64013917:+,family_with_sequence_similarity_159_member_B	SW579_THYROID	0.19	1	0.2478	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	VPS53--GLOD4	1	25	VPS53	3923	chr17:613773:-	GLOD4	55800	chr17:683978:-	ONLY_REF_SPLICE	NO	84	144	0.24	0.15	0.0118	0.295	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[35380],VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	SW579_THYROID	0.15	0.24	0.3068	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	MMP2--ALDOA	6	0	MMP2	19685	chr16:55539559:+	ALDOA	31887	chr16:30078930:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0708	0	MMP2->Oncogene{Bushman},chr16:55423612-55540603:+,matrix_metallopeptidase_2,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	SW579_THYROID	1	1	0.0708	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	VPS53--GLOD4	1	18	VPS53	3923	chr17:613773:-	GLOD4	58743	chr17:680228:-	ONLY_REF_SPLICE	NO	84	209	0.18	0.08	0.0118	0.2124	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[35380],VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	SW579_THYROID	0.08	0.18	0.2242	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	CHD8--HNRNPC	4	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0472	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	SW579_THYROID	1	1	0.0472	TRUE	1	3	0	10	0	TRUE	ACH-000163
SW579_THYROID	VPS53--GLOD4	1	11	VPS53	2361	chr17:617863:-	GLOD4	56987	chr17:681984:-	ONLY_REF_SPLICE	YES	23	126	0.34	0.09	0.0118	0.1298	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[35380],VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	SW579_THYROID	0.09	0.34	0.1416	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	COL6A1--FN1	3	0	COL6A1	4372	chr21:47406583:+	FN1	62132	chr2:216240079:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	SW579_THYROID	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	VIM--ACTB	3	0	VIM	2136	chr10:17271393:+	ACTB	15629	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SW579_THYROID	1	1	0.0354	TRUE	0	0	0	9	0	TRUE	ACH-000163
SW579_THYROID	VIM--ACTB	3	0	VIM	2127	chr10:17271384:+	ACTB	15629	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SW579_THYROID	1	1	0.0354	TRUE	0	0	0	9	0	TRUE	ACH-000163
SW579_THYROID	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	30054	chr13:114201615:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	SW579_THYROID	1	1	0.0236	TRUE	0	3	0	3	3	TRUE	ACH-000163
SW579_THYROID	ELK3--AKAP9	2	0	ELK3	5794	chr12:96617551:+	AKAP9	46178	chr7:91690574:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ELK3->ELK3,_ETS_transcription_factor,Oncogene{Bushman},chr12:96588160-96663613:+,AKAP9->A-kinase_anchoring_protein_9,Oncogene{Bushman},chr7:91570181-91739987:+	SW579_THYROID	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	SDCCAG8--CEP170	2	0	SDCCAG8	1223	chr1:243419542:+	CEP170	46555	chr1:243336148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[670],SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	SW579_THYROID	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000163
HCC1171_LUNG	TRAF4--CBX1	266	33	TRAF4	1272	chr17:27071273:+	CBX1	15008	chr17:46154403:-	ONLY_REF_SPLICE	YES	88	457	0.77	0.4	2.3751	0.2946	TRAF4->Oncogene{Bushman},TNF_receptor_associated_factor_4,chr17:27071002-27077974:+,CBX1->chr17:46147414-46178883:-,chromobox_1	HCC1171_LUNG	0.4	0.77	2.6697	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	NEDD8--TOLLIP	94	7	NEDD8	1205	chr14:24701456:-	TOLLIP	19150	chr11:1311639:-	ONLY_REF_SPLICE	YES	209	60	0.33	0.63	0.8393	0.0625	NEDD8->chr14:24686058-24701660:-,neural_precursor_cell_expressed,_developmentally_down-regulated_8,TOLLIP->chr11:1295601-1330884:-,toll_interacting_protein	HCC1171_LUNG	0.33	0.63	0.9018	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	FGD4--TACO1	60	11	FGD4	1431	chr12:32552893:+	TACO1	39325	chr17:61681894:+	ONLY_REF_SPLICE	YES	1	27	0.99	0.72	0.5357	0.0982	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,TACO1->chr17:61678231-61685725:+,translational_activator_of_cytochrome_c_oxidase_I	HCC1171_LUNG	0.72	0.99	0.6339	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	NDUFB10--AC141586.5	27	6	NDUFB10	1247	chr16:2009755:+	AC141586.5	7449	chr16:2660463:+	ONLY_REF_SPLICE	YES	287	25	0.1	0.57	0.2411	0.0536	NDUFB10->NADH:ubiquinone_oxidoreductase_subunit_B10,chr16:2009509-2011976:+,AC141586.5->chr16:2653351-2680495:+	HCC1171_LUNG	0.1	0.57	0.2947	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	SNX11--AC010761.9	15	1	SNX11	2518	chr17:46185395:+	AC010761.9	13943	chr17:27074190:-	INCL_NON_REF_SPLICE	YES	12	2	0.57	0.89	0.1339	0.0089	SNX11->chr17:46180719-46200436:+,sorting_nexin_11,AC010761.9->chr17:27072587-27074670:-	HCC1171_LUNG	0.57	0.89	0.1428	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	TNKS--MSRA	14	5	TNKS	18984	chr8:9567730:+	MSRA	54178	chr8:10102614:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.125	0.0446	TNKS->chr8:9413424-9639856:+,tankyrase,MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A	HCC1171_LUNG	0.95	1	0.1696	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	STRN3--TRAF4	11	4	STRN3	1498	chr14:31495110:-	TRAF4	28293	chr17:27074231:+	ONLY_REF_SPLICE	YES	39	128	0.28	0.1	0.0982	0.0357	STRN3->chr14:31363005-31495607:-,striatin_3,TRAF4->Oncogene{Bushman},TNF_receptor_associated_factor_4,chr17:27071002-27077974:+	HCC1171_LUNG	0.1	0.28	0.1339	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	MTAP--RP11-399D6.2	11	2	MTAP	9899	chr9:21854869:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0982	0.0179	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	HCC1171_LUNG	1	1	0.1161	TRUE	0	0	0	4	0	TRUE	ACH-000578
HCC1171_LUNG	TRAF4--CBX1	4	29	TRAF4	1272	chr17:27071273:+	CBX1	15011	chr17:46154400:-	INCL_NON_REF_SPLICE	YES	88	422	0.27	0.07	0.0357	0.2589	TRAF4->Oncogene{Bushman},TNF_receptor_associated_factor_4,chr17:27071002-27077974:+,CBX1->chr17:46147414-46178883:-,chromobox_1	HCC1171_LUNG	0.07	0.27	0.2946	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	HKR1--AC074286.1	6	0	HKR1	6449	chr19:37815167:+	AC074286.1	32222	chr2:178186965:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0	HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+,AC074286.1->chr2:178148236-178257419:-	HCC1171_LUNG	1	1	0.0536	TRUE	0	3	0	2	3	TRUE	ACH-000578
HCC1171_LUNG	AC002066.1--SEPT9	5	0	AC002066.1	1112	chr7:116139408:-	SEPT9	44221	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	AC002066.1->chr7:115878314-116139519:-,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	HCC1171_LUNG	1	1	0.0446	TRUE	0	0	0	2	0	TRUE	ACH-000578
HCC1171_LUNG	AFTPH--ZNF638	5	0	AFTPH	5401	chr2:64794847:+	ZNF638	23240	chr2:71575883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	AFTPH->aftiphilin,chr2:64751465-64820139:+,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	HCC1171_LUNG	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	PDHX--CAT	4	2	PDHX	3068	chr11:34953031:+	CAT	29038	chr11:34485652:+	ONLY_REF_SPLICE	YES	52	34	0.1	0.15	0.0357	0.0179	YOSHIHARA_TCGA_num_samples[BRCA:2],PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CAT->catalase,chr11:34460472-34493609:+	HCC1171_LUNG	0.1	0.15	0.0536	TRUE	0	0	0	2	0	TRUE	ACH-000578
HCC1171_LUNG	SPOP--GNAS	3	0	SPOP	1302	chr17:47755295:-	GNAS	39022	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC1171_LUNG	1	1	0.0268	TRUE	1	0	0	2	0	TRUE	ACH-000578
HCC1171_LUNG	PKHD1--NPAS2	2	1	PKHD1	21269	chr6:51917874:-	NPAS2	95108	chr2:101581323:+	ONLY_REF_SPLICE	YES	2	16	0.6	0.16	0.0179	0.0089	PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive),NPAS2->chr2:101436614-101613291:+,neuronal_PAS_domain_protein_2	HCC1171_LUNG	0.16	0.6	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	AC002066.1--PHF14	2	0	AC002066.1	1112	chr7:116139408:-	PHF14	36049	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	AC002066.1->chr7:115878314-116139519:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HCC1171_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	REPS2--GPR64	2	0	REPS2	19586	chrX:17153529:+	GPR64	34198	chrX:19100864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	REPS2->Oncogene{Bushman},RALBP1_associated_Eps_domain_containing_2,chrX:16964814-17171395:+,GPR64->chrX:19007427-19140755:-	HCC1171_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	SPOP--NCOR1	2	0	SPOP	1302	chr17:47755295:-	NCOR1	27786	chr17:16097953:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1	HCC1171_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	FAHD1--TSC2	1	1	FAHD1	4060	chr16:1888135:+	TSC2	36890	chr16:2131596:+	ONLY_REF_SPLICE	YES	4	45	0.33	0.04	0.0089	0.0089	FAHD1->chr16:1876968-1890208:+,fumarylacetoacetate_hydrolase_domain_containing_1,TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2	HCC1171_LUNG	0.04	0.33	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000578
NCCSTCK140_STOMACH	ZNF251--CHL1	133	33	ZNF251	3735	chr8:145979068:-	CHL1	19682	chr3:361366:+	ONLY_REF_SPLICE	YES	16	1	0.91	0.99	1.0032	0.2489	ZNF251->chr8:145946298-145981802:-,zinc_finger_protein_251,CHL1->Oncogene{Bushman},cell_adhesion_molecule_L1_like,chr3:238279-451090:+	NCCSTCK140_STOMACH	0.91	0.99	1.2521	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	BMPR2--TIPRL	38	13	BMPR2	1615	chr2:203242273:+	TIPRL	32120	chr1:168160607:+	ONLY_REF_SPLICE	YES	24	97	0.68	0.34	0.2866	0.0981	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,TIPRL->TOR_signaling_pathway_regulator,chr1:168148171-168169950:+	NCCSTCK140_STOMACH	0.34	0.68	0.3847	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	DCAF6--TADA1	22	3	DCAF6	3532	chr1:167921099:+	TADA1	36819	chr1:166831649:-	ONLY_REF_SPLICE	YES	18	34	0.58	0.42	0.1659	0.0226	DCAF6->DDB1_and_CUL4_associated_factor_6,chr1:167905021-168045081:+,TADA1->chr1:166825747-166845564:-,transcriptional_adaptor_1	NCCSTCK140_STOMACH	0.42	0.58	0.1885	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	AGAP1--HYDIN	6	0	AGAP1	1761	chr2:236403493:+	HYDIN	109534	chr16:70926432:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0453	0	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCCSTCK140_STOMACH	1	1	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	BMPR2--TIPRL	2	14	BMPR2	1615	chr2:203242273:+	TIPRL	31020	chr1:168154017:+	ONLY_REF_SPLICE	YES	24	96	0.4	0.14	0.0151	0.1056	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,TIPRL->TOR_signaling_pathway_regulator,chr1:168148171-168169950:+	NCCSTCK140_STOMACH	0.14	0.4	0.1207	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	FOXO1--RP11-172E9.2	3	0	FOXO1	2015	chr13:41239720:-	RP11-172E9.2	12287	chr13:40924439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,RP11-172E9.2->chr13:40918094-40924440:-	NCCSTCK140_STOMACH	1	1	0.0226	TRUE	0	0	0	3	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	PTPLAD1--IGF2	3	0	PTPLAD1	18226	chr15:65869775:+	IGF2	32899	chr11:2153078:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	NCCSTCK140_STOMACH	1	1	0.0226	TRUE	0	0	0	4	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	PTPLAD1--IGF2	3	0	PTPLAD1	18227	chr15:65869776:+	IGF2	32642	chr11:2153335:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	NCCSTCK140_STOMACH	1	1	0.0226	TRUE	0	0	0	4	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	TRIM29--RPS28	3	0	TRIM29	4810	chr11:120008041:-	RPS28	25450	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	TRIM29->chr11:119981983-120056237:-,tripartite_motif_containing_29,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCCSTCK140_STOMACH	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	AP003900.6--AC008079.9	2	1	AP003900.6	3299	chr21:11174002:+	AC008079.9	9069	chr22:18682508:-	ONLY_REF_SPLICE	YES	5	0	0.38	1	0.0151	0.0075	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	NCCSTCK140_STOMACH	0.38	1	0.0226	TRUE	0	1	0	3	1	TRUE	ACH-000110
NCCSTCK140_STOMACH	AP003900.6--AC008079.9	2	0	AP003900.6	1122	chr21:11169841:+	AC008079.9	9069	chr22:18682508:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	NCCSTCK140_STOMACH	1	1	0.0151	TRUE	0	0	0	2	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	CIB1--PKD2	2	0	CIB1	1379	chr15:90776901:-	PKD2	11798	chr4:88959403:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	HGNC_GENEFAM,CIB1->calcium_and_integrin_binding_1,chr15:90773207-90777279:-,PKD2->chr4:88928820-88998929:+,polycystin_2,_transient_receptor_potential_cation_channel	NCCSTCK140_STOMACH	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	HOXD11--NFE2L2	2	0	HOXD11	1411	chr2:176969354:+	NFE2L2	19035	chr2:178098999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	HOXD11->Oncogene{Bushman},chr2:176968944-176974722:+,homeobox_D11,NFE2L2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:178092323-178257425:-,nuclear_factor,_erythroid_2_like_2	NCCSTCK140_STOMACH	1	1	0.0151	TRUE	0	1	0	2	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	NDUFV3--U2AF1	2	0	NDUFV3	5809	chr21:44317157:+	U2AF1	26761	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	NCCSTCK140_STOMACH	1	1	0.0151	TRUE	0	5	0	8	0	TRUE	ACH-000110
NCIH684_LIVER	MAN1A1--GMPR	38	11	MAN1A1	2299	chr6:119669628:-	GMPR	24336	chr6:16247073:+	ONLY_REF_SPLICE	YES	0	9	1	0.84	0.2987	0.0865	MAN1A1->chr6:119498374-119670926:-,mannosidase_alpha_class_1A_member_1,GMPR->chr6:16238811-16295780:+,guanosine_monophosphate_reductase	NCIH684_LIVER	0.84	1	0.3852	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	UBE2R2--CREB3	15	1	UBE2R2	1368	chr9:33817932:+	CREB3	14227	chr9:35735106:+	ONLY_REF_SPLICE	YES	136	129	0.11	0.11	0.1179	0.0079	UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,CREB3->cAMP_responsive_element_binding_protein_3,chr9:35732332-35737001:+	NCIH684_LIVER	0.11	0.11	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	PMF1--RAB25	10	0	PMF1	1184	chr1:156182967:+	RAB25	18056	chr1:156038061:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0786	0	PMF1->chr1:156182784-156212874:+,polyamine-modulated_factor_1,RAB25->RAB25,_member_RAS_oncogene_family,chr1:156030951-156040295:+	NCIH684_LIVER	1	1	0.0786	TRUE	0	1	0	1	1	TRUE	ACH-000089
NCIH684_LIVER	FARP2--RP11-480C22.1	8	3	FARP2	17591	chr2:242375953:+	RP11-480C22.1	46859	chr11:127204919:+	ONLY_REF_SPLICE	YES	30	0	0.27	1	0.0629	0.0236	FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,RP11-480C22.1->chr11:127140957-127206928:+	NCIH684_LIVER	0.27	1	0.0865	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	GMPR--MAN1A1	7	4	GMPR	4579	chr6:16254966:+	MAN1A1	18977	chr6:119628157:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.055	0.0314	GMPR->chr6:16238811-16295780:+,guanosine_monophosphate_reductase,MAN1A1->chr6:119498374-119670926:-,mannosidase_alpha_class_1A_member_1	NCIH684_LIVER	0.79	1	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	GMPR--MAN1A1	6	6	GMPR	6810	chr6:16274727:+	MAN1A1	18977	chr6:119628157:-	ONLY_REF_SPLICE	YES	9	0	0.57	1	0.0472	0.0472	GMPR->chr6:16238811-16295780:+,guanosine_monophosphate_reductase,MAN1A1->chr6:119498374-119670926:-,mannosidase_alpha_class_1A_member_1	NCIH684_LIVER	0.57	1	0.0944	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	GMPR--MAN1A1	5	9	GMPR	6810	chr6:16274727:+	MAN1A1	17908	chr6:119653169:-	ONLY_REF_SPLICE	YES	9	0	0.61	1	0.0393	0.0707	GMPR->chr6:16238811-16295780:+,guanosine_monophosphate_reductase,MAN1A1->chr6:119498374-119670926:-,mannosidase_alpha_class_1A_member_1	NCIH684_LIVER	0.61	1	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	PPDPF--EEF2	3	0	PPDPF	1591	chr20:62152667:+	EEF2	5509	chr19:3985442:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	PPDPF->chr20:62152077-62153559:+,pancreatic_progenitor_cell_differentiation_and_proliferation_factor,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	NCIH684_LIVER	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	SMEK2--SERP1	3	0	SMEK2	18208	chr2:55795442:-	SERP1	31671	chr3:150284769:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	SMEK2->chr2:55774428-55846015:-,SERP1->chr3:150259781-150321015:-,stress-associated_endoplasmic_reticulum_protein_1	NCIH684_LIVER	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	AFG3L1P--OGT	2	0	AFG3L1P	2378	chr16:90044210:+	OGT	34875	chrX:70774363:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+,OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+	NCIH684_LIVER	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	PPP1R12C--GAK	2	0	PPP1R12C	8950	chr19:55610152:-	GAK	24941	chr4:898567:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	NCIH684_LIVER	1	1	0.0157	TRUE	0	1	0	2	1	TRUE	ACH-000089
NCIH684_LIVER	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	NCIH684_LIVER	1	1	0.0157	TRUE	0	1	0	17	0	TRUE	ACH-000089
NCIH684_LIVER	TES--CAPZA2	2	0	TES	1242	chr7:115850788:+	CAPZA2	19782	chr7:116528181:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+	NCIH684_LIVER	1	1	0.0157	TRUE	0	0	0	2	0	TRUE	ACH-000089
NCIH684_LIVER	ZFP64--RP5-1112F19.2	2	0	ZFP64	17934	chr20:50704931:-	RP5-1112F19.2	25876	chr20:50459288:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	ZFP64->Oncogene{Bushman},ZFP64_zinc_finger_protein,chr20:50668202-50820847:-,RP5-1112F19.2->chr20:50448336-50479451:-	NCIH684_LIVER	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	RP11-245P10.4--SRP9	1	1	RP11-245P10.4	1098	chr1:228595179:+	SRP9	6363	chr1:225965637:+	ONLY_REF_SPLICE	YES	1	50	0.67	0.04	0.0079	0.0079	RP11-245P10.4->chr1:228595082-228597395:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NCIH684_LIVER	0.04	0.67	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000089
MDAMB361_BREAST	EZR--OSTCP1	95	29	EZR	2248	chr6:159239114:-	OSTCP1	19828	chr6:159263171:-	ONLY_REF_SPLICE	YES	347	0	0.26	1	2.9007	0.8855	LOCAL_REARRANGEMENT:-:[21705],EZR->chr6:159186773-159240444:-,ezrin,OSTCP1->chr6:159262149-159278664:-,oligosaccharyltransferase_complex_subunit_pseudogene_1	MDAMB361_BREAST	0.26	1	3.7862	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TMEM104--CDK12	30	17	TMEM104	5634	chr17:72786435:+	CDK12	34991	chr17:37686884:+	ONLY_REF_SPLICE	YES	13	36	0.78	0.57	0.916	0.5191	{Klijn_CCL:Breast=1},TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	MDAMB361_BREAST	0.57	0.78	1.4351	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	BRIP1--VMP1	27	9	BRIP1	3979	chr17:59937157:-	VMP1	44452	chr17:57895073:+	ONLY_REF_SPLICE	YES	16	127	0.69	0.22	0.8244	0.2748	BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MDAMB361_BREAST	0.22	0.69	1.0992	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TMEM104--CDK12	22	18	TMEM104	5634	chr17:72786435:+	CDK12	34964	chr17:37686857:+	ONLY_REF_SPLICE	YES	13	37	0.75	0.52	0.6717	0.5496	{Klijn_CCL:Breast=1},TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	MDAMB361_BREAST	0.52	0.75	1.2213	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TANC2--PSMD12	24	3	TANC2	3326	chr17:61176718:+	PSMD12	56645	chr17:65346452:-	ONLY_REF_SPLICE	YES	31	219	0.47	0.11	0.7328	0.0916	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,PSMD12->chr17:65334032-65362743:-,proteasome_26S_subunit,_non-ATPase_12	MDAMB361_BREAST	0.11	0.47	0.8244	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	SUPT4H1--CEP112	18	4	SUPT4H1	4116	chr17:56424549:-	CEP112	44179	chr17:63685336:-	ONLY_REF_SPLICE	YES	176	1	0.11	0.96	0.5496	0.1221	SUPT4H1->SPT4_homolog,_DSIF_elongation_factor_subunit,chr17:56422539-56430454:-,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	MDAMB361_BREAST	0.11	0.96	0.6717	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	MAP1LC3B--ZNF821	18	2	MAP1LC3B	4437	chr16:87426073:+	ZNF821	20372	chr16:71901940:-	ONLY_REF_SPLICE	YES	78	12	0.2	0.62	0.5496	0.0611	MAP1LC3B->chr16:87417601-87438385:+,microtubule_associated_protein_1_light_chain_3_beta,ZNF821->chr16:71893583-71929239:-,zinc_finger_protein_821	MDAMB361_BREAST	0.2	0.62	0.6107	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TOX3--GNAO1	14	3	TOX3	6771	chr16:52497846:-	GNAO1	23976	chr16:56309843:+	ONLY_REF_SPLICE	YES	15	3	0.53	0.85	0.4275	0.0916	TOX3->TOX_high_mobility_group_box_family_member_3,chr16:52471917-52581714:-,GNAO1->G_protein_subunit_alpha_o1,chr16:56225302-56391356:+	MDAMB361_BREAST	0.53	0.85	0.5191	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TTC6--MIPOL1	12	3	TTC6	1162	chr14:38065213:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	0	3	1	0.83	0.3664	0.0916	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAMB361_BREAST	0.83	1	0.458	TRUE	0	9	0	5	8	TRUE	ACH-000934
MDAMB361_BREAST	CDYL--CDKAL1	11	2	CDYL	6988	chr6:4777041:+	CDKAL1	32222	chr6:20955650:+	ONLY_REF_SPLICE	YES	2	8	0.87	0.62	0.3359	0.0611	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},{Klijn_CCL:Breast=1},CDYL->chr6:4706393-4955785:+,chromodomain_protein,_Y-like,CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+	MDAMB361_BREAST	0.62	0.87	0.397	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	MTMR4--CUEDC1	11	0	MTMR4	13237	chr17:56581411:-	CUEDC1	31885	chr17:55948730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3359	0	MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,CUEDC1->CUE_domain_containing_1,Oncogene{Bushman},chr17:55938604-56032684:-	MDAMB361_BREAST	1	1	0.3359	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TMEM104--CDK12	6	17	TMEM104	5630	chr17:72786431:+	CDK12	34991	chr17:37686884:+	INCL_NON_REF_SPLICE	YES	13	36	0.64	0.39	0.1832	0.5191	{Klijn_CCL:Breast=1},TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	MDAMB361_BREAST	0.39	0.64	0.7023	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	DDX42--PITPNC1	8	4	DDX42	8261	chr17:61877977:+	PITPNC1	30692	chr17:65528918:+	ONLY_REF_SPLICE	YES	138	2	0.08	0.86	0.2443	0.1221	{Klijn_CCL:Breast=1},DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+,PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1	MDAMB361_BREAST	0.08	0.86	0.3664	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	CMTM4--AKR1C4	8	2	CMTM4	1368	chr16:66730243:-	AKR1C4	15121	chr10:5237428:+	INCL_NON_REF_SPLICE	YES	6	0	0.62	1	0.2443	0.0611	{Klijn_CCL:Breast=1},CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,AKR1C4->aldo-keto_reductase_family_1,_member_C4,chr10:5237425-5260912:+	MDAMB361_BREAST	0.62	1	0.3054	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	ELOVL5--KLHL31	7	2	ELOVL5	1333	chr6:53213615:-	KLHL31	22692	chr6:53517128:-	ONLY_REF_SPLICE	YES	142	0	0.06	1	0.2137	0.0611	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,KLHL31->chr6:53512699-53530506:-,kelch_like_family_member_31	MDAMB361_BREAST	0.06	1	0.2748	TRUE	0	0	0	2	0	TRUE	ACH-000934
MDAMB361_BREAST	TTC6--MIPOL1	6	0	TTC6	1162	chr14:38065213:+	MIPOL1	90133	chr14:38016110:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1832	0	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAMB361_BREAST	1	1	0.1832	TRUE	0	2	0	2	1	TRUE	ACH-000934
MDAMB361_BREAST	RAB22A--PHACTR3	5	2	RAB22A	7087	chr20:56929321:+	PHACTR3	26268	chr20:58318162:+	ONLY_REF_SPLICE	YES	37	0	0.16	1	0.1527	0.0611	{Klijn_CCL:Breast=1},RAB22A->RAB22A,_member_RAS_oncogene_family,chr20:56884752-56942563:+,PHACTR3->chr20:58152564-58422766:+,phosphatase_and_actin_regulator_3	MDAMB361_BREAST	0.16	1	0.2138	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TANC2--MTMR4	4	2	TANC2	19699	chr17:61417693:+	MTMR4	62434	chr17:56581849:-	ONLY_REF_SPLICE	YES	17	16	0.26	0.27	0.1221	0.0611	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4	MDAMB361_BREAST	0.26	0.27	0.1832	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	CDYL--CDKAL1	4	0	CDYL	6988	chr6:4777041:+	CDKAL1	33389	chr6:21000458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1221	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},{Klijn_CCL:Breast=1},CDYL->chr6:4706393-4955785:+,chromodomain_protein,_Y-like,CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+	MDAMB361_BREAST	1	1	0.1221	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	PPP2R2C--ADD1	4	0	PPP2R2C	5685	chr4:6473887:-	ADD1	34252	chr4:2877623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1221	0	PPP2R2C->chr4:6322305-6565327:-,protein_phosphatase_2_regulatory_subunit_B,_gamma,ADD1->adducin_1,chr4:2845584-2931803:+	MDAMB361_BREAST	1	1	0.1221	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TANGO6--CES4A	3	2	TANGO6	24871	chr16:69074324:+	CES4A	33448	chr16:67034541:+	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0916	0.0611	TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,CES4A->carboxylesterase_4A,chr16:67022492-67043661:+	MDAMB361_BREAST	0.5	1	0.1527	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	DOCK1--CSMD1	2	1	DOCK1	29798	chr10:129046373:+	CSMD1	120097	chr8:2976109:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0611	0.0305	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,CSMD1->CUB_and_Sushi_multiple_domains_1,chr8:2792875-4852494:-	MDAMB361_BREAST	0.25	1	0.0916	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	PDE4D--CCT6B	1	1	PDE4D	8944	chr5:59481384:-	CCT6B	71982	chr17:33259519:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0.0305	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,CCT6B->chaperonin_containing_TCP1_subunit_6B,chr17:33254878-33308097:-	MDAMB361_BREAST	1	1	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000934
KYSE150_OESOPHAGUS	PDE8A--SND1	8	15	PDE8A	9757	chr15:85626875:+	SND1	34799	chr7:127326667:+	ONLY_REF_SPLICE	YES	60	354	0.28	0.06	0.1041	0.1952	{Klijn_CCL:Head-Neck=1},PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1	KYSE150_OESOPHAGUS	0.06	0.28	0.2993	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	ABCB9--ERP29	8	13	ABCB9	9470	chr12:123444182:-	ERP29	32257	chr12:112451258:+	INCL_NON_REF_SPLICE	YES	15	5	0.58	0.81	0.1041	0.1692	ABCB9->ATP_binding_cassette_subfamily_B_member_9,chr12:123405498-123466196:-,ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29	KYSE150_OESOPHAGUS	0.58	0.81	0.2733	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	MTA1--PACS2	5	0	MTA1	1242	chr14:105886400:+	PACS2	42650	chr14:105856298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0651	0	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUSC:1],{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[21675],MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1,PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2	KYSE150_OESOPHAGUS	1	1	0.0651	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	ACTN4--RPN2	4	0	ACTN4	15423	chr19:39214717:+	RPN2	32632	chr20:35833170:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0521	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,RPN2->chr20:35806813-35870022:+,ribophorin_II	KYSE150_OESOPHAGUS	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	EXT1--SAMD12	4	0	EXT1	2769	chr8:119122324:-	SAMD12	31808	chr8:119209971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0521	0	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	KYSE150_OESOPHAGUS	1	1	0.0521	TRUE	0	6	0	5	5	TRUE	ACH-000855
KYSE150_OESOPHAGUS	DCUN1D1--CALM1	2	0	DCUN1D1	4385	chr3:182683467:-	CALM1	21812	chr14:90865335:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	DCUN1D1->chr3:182655862-182703741:-,defective_in_cullin_neddylation_1_domain_containing_1,CALM1->calmodulin_1_(phosphorylase_kinase,_delta),chr14:90862846-90874605:+	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	EARS2--ZSWIM7	2	0	EARS2	13175	chr16:23536565:-	ZSWIM7	27477	chr17:15880406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	EARS2->chr16:23533335-23569052:-,glutamyl-tRNA_synthetase_2,_mitochondrial,ZSWIM7->chr17:15879874-15903031:-,zinc_finger_SWIM-type_containing_7	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	MTA1--PACS2	2	0	MTA1	1242	chr14:105886400:+	PACS2	39472	chr14:105851216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUSC:1],{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[21675],MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1,PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	SENP2--RRP15	2	0	SENP2	3765	chr3:185307957:+	RRP15	31449	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	SENP2->SUMO1/sentrin/SMT3_specific_peptidase_2,chr3:185300284-185351339:+,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	TRIM37--SKA2	2	0	TRIM37	12705	chr17:57148184:-	SKA2	40039	chr17:57196856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_REARRANGEMENT:-:[3030],TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	TSGA10--LYG1	2	0	TSGA10	3904	chr2:99757891:-	LYG1	34683	chr2:99912165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	TSGA10->chr2:99613724-99771427:-,testis_specific_10,LYG1->chr2:99900701-99921205:-,lysozyme_g1	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	TSGA10--LYG1	2	0	TSGA10	4249	chr2:99757546:-	LYG1	34683	chr2:99912165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	TSGA10->chr2:99613724-99771427:-,testis_specific_10,LYG1->chr2:99900701-99921205:-,lysozyme_g1	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
NUGC3_STOMACH	FAM129B--METRNL	610	343	FAM129B	8172	chr9:130285958:-	METRNL	23759	chr17:81050912:+	ONLY_REF_SPLICE	YES	320	28	0.75	0.97	6.1341	3.4492	{Klijn_CCL:Stomach=1},FAM129B->chr9:130267618-130341268:-,family_with_sequence_similarity_129_member_B,METRNL->chr17:81037567-81052864:+,meteorin,_glial_cell_differentiation_regulator-like	NUGC3_STOMACH	0.75	0.97	9.5833	TRUE	0	0	0	2	0	TRUE	ACH-000911
NUGC3_STOMACH	CPT1A--AP000867.1	328	137	CPT1A	9234	chr11:68571468:-	AP000867.1	38418	chr11:71293203:-	ONLY_REF_SPLICE	YES	95	0	0.83	1	3.2984	1.3777	CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-,AP000867.1->chr11:71292956-71318487:-	NUGC3_STOMACH	0.83	1	4.6761	TRUE	0	0	0	2	0	TRUE	ACH-000911
NUGC3_STOMACH	CDC42--RP11-431K24.1	83	2	CDC42	1116	chr1:22379235:+	RP11-431K24.1	16705	chr1:8181534:+	ONLY_REF_SPLICE	YES	3	0	0.97	1	0.8346	0.0201	CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,RP11-431K24.1->chr1:8086798-8182762:+	NUGC3_STOMACH	0.97	1	0.8547	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	MAML3--CLGN	70	27	MAML3	2325	chr4:141074014:-	CLGN	17882	chr4:141334241:-	ONLY_REF_SPLICE	YES	2	6	0.98	0.94	0.7039	0.2715	MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3,CLGN->calmegin,chr4:141309609-141349122:-	NUGC3_STOMACH	0.94	0.98	0.9754	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	SLC12A2--CTC-228N24.1	34	15	SLC12A2	1945	chr5:127420402:+	CTC-228N24.1	41904	chr5:127089960:+	ONLY_REF_SPLICE	YES	13	0	0.79	1	0.3419	0.1508	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,CTC-228N24.1->chr5:127039082-127277326:+	NUGC3_STOMACH	0.79	1	0.4927	TRUE	0	2	0	1	1	TRUE	ACH-000911
NUGC3_STOMACH	CHD7--C8orf34	28	10	CHD7	6284	chr8:61693989:+	C8orf34	46838	chr8:69351734:+	ONLY_REF_SPLICE	YES	4	0	0.9	1	0.2816	0.1006	CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7,C8orf34->chr8:69242957-69731257:+,chromosome_8_open_reading_frame_34	NUGC3_STOMACH	0.9	1	0.3822	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	CTD-2206N4.4--LRRC37A11P	11	2	CTD-2206N4.4	4235	chr17:37219799:+	LRRC37A11P	28174	chr17:37209118:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.1106	0.0201	LOCAL_REARRANGEMENT:+:[3814],CTD-2206N4.4->chr17:37213272-37269443:+,LRRC37A11P->chr17:37183530-37209458:+,leucine-rich_repeat_containing_37_member_A11,_pseudogene	NUGC3_STOMACH	0.76	1	0.1307	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	9	8	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0905	0.0804	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.94	1	0.1709	TRUE	0	0	0	16	0	TRUE	ACH-000911
NUGC3_STOMACH	ANP32B--SEPT7	7	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	NUGC3_STOMACH	1	1	0.0704	TRUE	1	1	0	18	1	TRUE	ACH-000911
NUGC3_STOMACH	TPT1--H19	7	0	TPT1	1319	chr13:45915187:-	H19	11854	chr11:2017003:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0	TPT1->chr13:45911008-45915505:-,tumor_protein,_translationally-controlled_1,H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-	NUGC3_STOMACH	1	1	0.0704	TRUE	0	0	0	4	0	TRUE	ACH-000911
NUGC3_STOMACH	HINT3--NCOA7	6	3	HINT3	1398	chr6:126278324:+	NCOA7	19902	chr6:126196035:+	ONLY_REF_SPLICE	YES	135	24	0.06	0.27	0.0603	0.0302	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[25661],HINT3->chr6:126277927-126301387:+,histidine_triad_nucleotide_binding_protein_3,NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7	NUGC3_STOMACH	0.06	0.27	0.0905	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	CHD7--C8orf34	4	3	CHD7	4853	chr8:61655656:+	C8orf34	46838	chr8:69351734:+	ONLY_REF_SPLICE	YES	7	0	0.5	1	0.0402	0.0302	CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7,C8orf34->chr8:69242957-69731257:+,chromosome_8_open_reading_frame_34	NUGC3_STOMACH	0.5	1	0.0704	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	2	9	AP003900.6	2187	chr21:11172043:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0201	0.0905	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.85	1	0.1106	TRUE	0	0	0	12	0	TRUE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	2	3	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	1	9	0.83	0.36	0.0201	0.0302	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.36	0.83	0.0503	TRUE	0	0	0	13	0	TRUE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	2	2	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	1	9	0.8	0.31	0.0201	0.0201	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.31	0.8	0.0402	TRUE	0	0	0	13	0	TRUE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	2	2	AP003900.6	2187	chr21:11172043:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	9	0.67	0.31	0.0201	0.0201	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.31	0.67	0.0402	TRUE	0	0	0	3	0	TRUE	ACH-000911
NUGC3_STOMACH	AC104389.28--HBE1	2	0	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NUGC3_STOMACH	1	1	0.0201	TRUE	0	0	0	9	0	TRUE	ACH-000911
NUGC3_STOMACH	CSNK1E--MIER2	2	0	CSNK1E	13030	chr22:38694791:-	MIER2	26236	chr19:336173:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-,MIER2->MIER_family_member_2,chr19:305575-344798:-	NUGC3_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	CTD-2206N4.4--LRRC37A11P	1	4	CTD-2206N4.4	5360	chr17:37228844:+	LRRC37A11P	28174	chr17:37209118:+	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0101	0.0402	LOCAL_REARRANGEMENT:+:[3814],CTD-2206N4.4->chr17:37213272-37269443:+,LRRC37A11P->chr17:37183530-37209458:+,leucine-rich_repeat_containing_37_member_A11,_pseudogene	NUGC3_STOMACH	0.56	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	TENM1--RP5-928E24.2	1	2	TENM1	33752	chrX:123525902:-	RP5-928E24.2	48746	chrX:84467017:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0101	0.0201	TENM1->chrX:123509753-124097666:-,teneurin_transmembrane_protein_1,RP5-928E24.2->chrX:84465712-84474704:+	NUGC3_STOMACH	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	IL1RAPL2--COL4A6	1	1	IL1RAPL2	7528	chrX:104728379:+	COL4A6	20703	chrX:107554058:-	ONLY_REF_SPLICE	NO	10	7	0.17	0.22	0.0101	0.0101	IL1RAPL2->chrX:103810996-105011822:+,interleukin_1_receptor_accessory_protein_like_2,COL4A6->chrX:107386780-107682727:-,collagen_type_IV_alpha_6	NUGC3_STOMACH	0.17	0.22	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000911
COLO741_SKIN	ST7--BAIAP2L1	65	68	ST7	19040	chr7:116778586:+	BAIAP2L1	41824	chr7:97984440:-	ONLY_REF_SPLICE	YES	147	18	0.47	0.88	0.7557	0.7905	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-	COLO741_SKIN	0.47	0.88	1.5462	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	FHOD3--DLGAP1	74	25	FHOD3	3459	chr18:33952707:+	DLGAP1	67123	chr18:3582246:-	ONLY_REF_SPLICE	YES	13	11	0.88	0.9	0.8603	0.2906	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	COLO741_SKIN	0.88	0.9	1.1509	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	MAFK--SLC29A4	76	1	MAFK	1185	chr7:1570534:+	SLC29A4	14199	chr7:5330363:+	ONLY_REF_SPLICE	YES	0	4	1	0.95	0.8835	0.0116	MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K,SLC29A4->chr7:5314000-5346501:+,solute_carrier_family_29_member_4	COLO741_SKIN	0.95	1	0.8951	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	MYO1D--ASIC2	28	8	MYO1D	1400	chr17:31203796:-	ASIC2	51707	chr17:31353000:-	ONLY_REF_SPLICE	YES	7	0	0.84	1	0.3255	0.093	MYO1D->chr17:30819540-31204195:-,myosin_ID,ASIC2->acid_sensing_ion_channel_subunit_2,chr17:31340105-32501983:-	COLO741_SKIN	0.84	1	0.4185	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	IMMP2L--C7orf60	14	5	IMMP2L	4976	chr7:111127294:-	C7orf60	24951	chr7:112462428:-	ONLY_REF_SPLICE	YES	106	25	0.15	0.43	0.1628	0.0581	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,C7orf60->chr7:112459202-112579971:-	COLO741_SKIN	0.15	0.43	0.2209	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	SLC29A4--TRRAP	13	4	SLC29A4	3456	chr7:5327616:+	TRRAP	40291	chr7:98522735:+	ONLY_REF_SPLICE	YES	2	29	0.89	0.37	0.1511	0.0465	SLC29A4->chr7:5314000-5346501:+,solute_carrier_family_29_member_4,TRRAP->chr7:98475556-98610866:+,transformation/transcription_domain_associated_protein	COLO741_SKIN	0.37	0.89	0.1976	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	ST7--BAIAP2L1	2	41	ST7	19040	chr7:116778586:+	BAIAP2L1	42912	chr7:97949610:-	ONLY_REF_SPLICE	YES	147	34	0.23	0.56	0.0233	0.4766	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-	COLO741_SKIN	0.23	0.56	0.4999	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	FHOD3--DLGAP1	5	26	FHOD3	3459	chr18:33952707:+	DLGAP1	66093	chr18:3656113:-	ONLY_REF_SPLICE	YES	13	12	0.7	0.72	0.0581	0.3023	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	COLO741_SKIN	0.7	0.72	0.3604	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	PRKAG2--AC073133.1	9	3	PRKAG2	7757	chr7:151478238:-	AC073133.1	33621	chr7:156234074:-	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.1046	0.0349	PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2,AC073133.1->chr7:156230483-156238282:-	COLO741_SKIN	0.75	1	0.1395	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	FHOD3--DLGAP1	4	21	FHOD3	2394	chr18:33935608:+	DLGAP1	67123	chr18:3582246:-	ONLY_REF_SPLICE	YES	13	11	0.66	0.69	0.0465	0.2441	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	COLO741_SKIN	0.66	0.69	0.2906	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	ARHGAP10--EDNRA	7	4	ARHGAP10	13596	chr4:148796301:+	EDNRA	44527	chr4:148463630:+	ONLY_REF_SPLICE	YES	15	0	0.42	1	0.0814	0.0465	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	COLO741_SKIN	0.42	1	0.1279	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	PRKRIP1--ST7	5	7	PRKRIP1	11623	chr7:102065788:+	ST7	34999	chr7:116810916:+	INCL_NON_REF_SPLICE	YES	73	150	0.14	0.07	0.0581	0.0814	PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	COLO741_SKIN	0.07	0.14	0.1395	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	ARHGAP42--CNTN5	5	3	ARHGAP42	4396	chr11:100665897:+	CNTN5	41440	chr11:99426876:+	ONLY_REF_SPLICE	YES	18	0	0.31	1	0.0581	0.0349	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,CNTN5->chr11:98891683-100229616:+,contactin_5	COLO741_SKIN	0.31	1	0.093	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	ZNF862--PPP1R3A	4	1	ZNF862	3841	chr7:149543344:+	PPP1R3A	23350	chr7:113558352:-	ONLY_REF_SPLICE	YES	21	0	0.19	1	0.0465	0.0116	ZNF862->chr7:149535456-149564568:+,zinc_finger_protein_862,PPP1R3A->chr7:113516832-113715975:-,protein_phosphatase_1_regulatory_subunit_3A	COLO741_SKIN	0.19	1	0.0581	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	FHOD3--DLGAP1	1	6	FHOD3	2394	chr18:33935608:+	DLGAP1	67207	chr18:3582162:-	ONLY_REF_SPLICE	NO	13	10	0.35	0.41	0.0116	0.0698	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	COLO741_SKIN	0.35	0.41	0.0814	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	EGFR--CUX1	2	1	EGFR	1345	chr7:55087058:+	CUX1	50464	chr7:101559395:+	ONLY_REF_SPLICE	YES	3	30	0.5	0.09	0.0233	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	COLO741_SKIN	0.09	0.5	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	AFAP1--ABLIM2	2	0	AFAP1	2633	chr4:7873679:-	ABLIM2	41352	chr4:8062781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	COLO741_SKIN	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	AGRN--ACAP3	2	0	AGRN	4732	chr1:970704:+	ACAP3	29010	chr1:1239523:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},AGRN->agrin,chr1:955503-991496:+,ACAP3->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_3,chr1:1227756-1244989:-	COLO741_SKIN	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	CDIP1--HEATR2	2	0	CDIP1	1127	chr16:4588703:-	HEATR2	19387	chr7:794226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CDIP1->cell_death-inducing_p53_target_1,chr16:4560676-4588829:-,HEATR2->chr7:766338-829190:+	COLO741_SKIN	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	CNPPD1--MXD3	2	0	CNPPD1	3516	chr2:220040313:-	MXD3	13641	chr5:176734965:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1,MXD3->MAX_dimerization_protein_3,chr5:176728462-176739758:-	COLO741_SKIN	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	MOXD1--IVNS1ABP	2	0	MOXD1	7086	chr6:132693747:-	IVNS1ABP	26655	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	MOXD1->chr6:132617194-132722684:-,monooxygenase_DBH_like_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	COLO741_SKIN	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	RELT--NXPE1	2	0	RELT	1236	chr11:73087544:+	NXPE1	23273	chr11:114398623:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	RELT->RELT_tumor_necrosis_factor_receptor,chr11:73087309-73108519:+,NXPE1->chr11:114392437-114430617:-,neurexophilin_and_PC-esterase_domain_family_member_1	COLO741_SKIN	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000582
HEYA8_OVARY	HSP90AB1--RTFDC1	17	0	HSP90AB1	6181	chr6:44220004:+	RTFDC1	14675	chr20:55048357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2194	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,RTFDC1->chr20:55043647-55093943:+,replication_termination_factor_2_domain_containing_1	HEYA8_OVARY	1	1	0.2194	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	HNRNPM--HSPA4	6	0	HNRNPM	5233	chr19:8528570:+	HSPA4	38815	chr5:132435237:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0774	0	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	HEYA8_OVARY	1	1	0.0774	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	C17orf76-AS1--ANXA2	5	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0645	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	HEYA8_OVARY	1	1	0.0645	TRUE	0	0	0	10	0	TRUE	ACH-000542
HEYA8_OVARY	BCAS3--ACVR2A	2	0	BCAS3	9960	chr17:58824640:+	ACVR2A	61220	chr2:148653870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,ACVR2A->Oncogene{Bushman},activin_A_receptor_type_2A,chr2:148602086-148688393:+	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	CDC42BPB--MBD2	2	0	CDC42BPB	4992	chr14:103470265:-	MBD2	47426	chr18:51692536:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CDC42BPB->CDC42_binding_protein_kinase_beta,chr14:103398716-103523799:-,MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	FAU--CALM3	2	0	FAU	1974	chr11:64888972:-	CALM3	11525	chr19:47112181:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	FAU->Finkel-Biskis-Reilly_murine_sarcoma_virus_(FBR-MuSV)_ubiquitously_expressed,chr11:64888100-64889945:-,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	IGF2BP2--TRA2B	2	0	IGF2BP2	2393	chr3:185540941:-	TRA2B	30253	chr3:185649640:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	HEYA8_OVARY	1	1	0.0258	TRUE	0	7	0	3	1	TRUE	ACH-000542
HEYA8_OVARY	MDN1--TSEN2	2	0	MDN1	9520	chr6:90491118:-	TSEN2	104948	chr3:12544761:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MDN1->chr6:90352218-90529442:-,midasin_AAA_ATPase_1,TSEN2->chr3:12525931-12581122:+,tRNA_splicing_endonuclease_subunit_2	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	MKLN1-AS1--RB1	2	0	MKLN1-AS1	11360	chr7:130668812:-	RB1	20562	chr13:48881416:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MKLN1-AS1->chr7:130626519-130794935:-,RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	MME--GMPS	2	0	MME	14590	chr3:154836600:+	GMPS	36159	chr3:155611307:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MME->Oncogene{Bushman},chr3:154741913-154901497:+,membrane_metallo-endopeptidase,GMPS->Oncogene{Bushman},chr3:155588325-155661815:+,guanine_monophosphate_synthase	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	PPP1R12C--RNF126	2	0	PPP1R12C	8950	chr19:55610152:-	RNF126	21605	chr19:652884:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,RNF126->chr19:647526-663277:-,ring_finger_protein_126	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	ST7L--SET	2	0	ST7L	6176	chr1:113153463:-	SET	35006	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ST7L->chr1:113066140-113163447:-,suppression_of_tumorigenicity_7_like,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP2--HPSE2	43	16	G3BP2	12837	chr4:76580250:-	HPSE2	26269	chr10:100904156:-	ONLY_REF_SPLICE	YES	92	0	0.39	1	0.6386	0.2376	G3BP2->G3BP_stress_granule_assembly_factor_2,chr4:76567966-76649709:-,HPSE2->chr10:100218875-100995619:-,heparanase_2_(inactive)	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.8762	TRUE	0	0	0	1	0	TRUE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF827--CCSER1	21	12	ZNF827	12263	chr4:146744574:-	CCSER1	61141	chr4:92519723:+	ONLY_REF_SPLICE	YES	42	0	0.44	1	0.3119	0.1782	ZNF827->chr4:146678779-146859787:-,zinc_finger_protein_827,CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.4901	TRUE	0	0	0	1	0	TRUE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USO1--SHROOM3	13	1	USO1	7680	chr4:76695949:+	SHROOM3	51013	chr4:77691779:+	ONLY_REF_SPLICE	YES	23	0	0.38	1	0.1931	0.0149	USO1->USO1_vesicle_transport_factor,chr4:76649777-76735382:+,SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.208	TRUE	0	0	0	1	0	TRUE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC24D--FAT4	6	5	SEC24D	24125	chr4:119666099:-	FAT4	48104	chr4:126319939:+	ONLY_REF_SPLICE	YES	80	1	0.12	0.92	0.0891	0.0743	SEC24D->SEC24_homolog_D,_COPII_coat_complex_component,chr4:119643978-119759838:-,FAT4->FAT_atypical_cadherin_4,chr4:126237554-126414087:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.92	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HS2ST1--SEP15	2	0	HS2ST1	1513	chr1:87380843:+	SEP15	26013	chr1:87369131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	TRUE	0	2	0	9	0	TRUE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATXN7--THOC7	1	1	ATXN7	3640	chr3:63884173:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	YES	0	16	1	0.11	0.0149	0.0149	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0298	TRUE	0	2	0	5	2	TRUE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SETD3--VRK1	1	1	SETD3	1152	chr14:99947065:-	VRK1	23392	chr14:97299804:+	ONLY_REF_SPLICE	YES	54	7	0.04	0.22	0.0149	0.0149	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.22	0.0298	TRUE	0	0	0	2	0	TRUE	ACH-000315