40K	./CTAT_SINGULARITY/STAR-Fusion/dev
57K	./CTAT_SINGULARITY/STAR-Fusion/README.txt
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2.5G	./CTAT_SINGULARITY/STAR-Fusion
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1.9G	./CTAT_SINGULARITY/InferCNV/infercnv.1.3.6-S.simg
1.8G	./CTAT_SINGULARITY/InferCNV/infercnv.1.3.5.simg
2.1G	./CTAT_SINGULARITY/InferCNV/infercnv-1.20.0.simg
2.1G	./CTAT_SINGULARITY/InferCNV/infercnv.1.15.3.simg
9.8G	./CTAT_SINGULARITY/InferCNV
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607M	./CTAT_SINGULARITY/CTAT-SPLICING
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1.2G	./CTAT_SINGULARITY/ctat-LR-fusion
57K	./CTAT_SINGULARITY/README.txt
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3.1G	./CTAT_SINGULARITY/CTAT_MUTATIONS
1.2G	./CTAT_SINGULARITY/TrinityFusion/trinityfusion.v0.4.0.simg
1.2G	./CTAT_SINGULARITY/TrinityFusion/trinityfusion.v0.4.0-post.simg
1000M	./CTAT_SINGULARITY/TrinityFusion/__archived/trinityfusion.v0.3.6.simg
1000M	./CTAT_SINGULARITY/TrinityFusion/__archived
3.4G	./CTAT_SINGULARITY/TrinityFusion
1.5G	./CTAT_SINGULARITY/VirusIntegrationFinder/ctat_vif.v1.5.0.simg
1.5G	./CTAT_SINGULARITY/VirusIntegrationFinder
727M	./CTAT_SINGULARITY/MISC/EVidenceModeler/EVidenceModeler.v2.1.0.simg
727M	./CTAT_SINGULARITY/MISC/EVidenceModeler
1.5G	./CTAT_SINGULARITY/MISC/TransDecoder/transdecoder.v5.7.1.simg
1.5G	./CTAT_SINGULARITY/MISC/TransDecoder
584M	./CTAT_SINGULARITY/MISC/PASApipeline/pasapipeline.v2.5.3.simg
584M	./CTAT_SINGULARITY/MISC/PASApipeline
2.7G	./CTAT_SINGULARITY/MISC
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1.2G	./CTAT_SINGULARITY/FusionInspector
26G	./CTAT_SINGULARITY
25K	./FusionInspector_Paper/FI_benchmarking/on_cancer_cell_lines
89K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G20476.DMS_454.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28054.KYSE-520.1.FI_targets
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57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G26182.KMS-12-BM.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28535.OVTOKO.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28081.JHH-7.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G41706.RT4.5.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G20498.KYSE-180.2.FI_targets
89K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G41724.HGC-27.5.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/K562.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G27544.SF268.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G26199.LN-229.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G27488.SNU-620.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G26253.KMS-34.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28070.LN-18.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G20495.786-O.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G27280.TC-71.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G27376.COLO_792.1.FI_targets
89K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G41710.SNU-16.5.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28050.KMM-1.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G27463.SK-MEL-1.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G41663.OVISE.5.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G27367.BFTC-909.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28077.MG-63.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/H2228.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G26228.Hs_683.2.FI_targets
89K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G25225.NCI-H522.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G26216.KP-2.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G20500.IGR-37.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28072.MDA-MB-175-VII.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G30594.UACC-893.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28610.MHH-ES-1.1.FI_targets
89K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G25214.MKN7.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28034.MDA-MB-361.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G27214.PC-3.1.FI_targets
89K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G30631.SU-DHL-10.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G26175.A172.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/SKBR3.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/VCaP_85.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G27453.SNU-398.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28011.KLE.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/LC2Ad.FI_targets
89K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G26236.NCI-H716.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/MCF7.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G27219.Panc_03.27.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G27476.PK-59.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G26212.A-673.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28545.NUGC-2.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G27516.SK-MEL-28.2.FI_targets
89K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G41709.FaDu.5.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28087.MDA-MB-436.1.FI_targets
89K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G26249.KMS-26.2.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/KPL4.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G41682.KYSE-510.5.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28045.KYSE-270.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G28575.OUMS-23.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/BT474.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G27233.A-498.1.FI_targets
57K	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods/G27479.SK-MEL-3.2.FI_targets
3.7M	./FusionInspector_Paper/FI_benchmarking/FI_target_lists_mult_methods
57K	./FusionInspector_Paper/FI_benchmarking/FI_panel_breastcancer_Edgren/fusion_panel.tsv
57K	./FusionInspector_Paper/FI_benchmarking/FI_panel_breastcancer_Edgren/SKBR3.FusionInspector.fusions.abridged.tsv
57K	./FusionInspector_Paper/FI_benchmarking/FI_panel_breastcancer_Edgren/KPL4.FusionInspector.fusions.abridged.tsv
57K	./FusionInspector_Paper/FI_benchmarking/FI_panel_breastcancer_Edgren/MCF7.FusionInspector.fusions.abridged.tsv
57K	./FusionInspector_Paper/FI_benchmarking/FI_panel_breastcancer_Edgren/BT474.FusionInspector.fusions.abridged.tsv
323K	./FusionInspector_Paper/FI_benchmarking/FI_panel_breastcancer_Edgren
4.1M	./FusionInspector_Paper/FI_benchmarking
2.7M	./FusionInspector_Paper/FusionInspector.v2.4.0.C4_targeted_fusions.tar.gz
4.5M	./FusionInspector_Paper/FusionInspector.v2.4.0.examine_recurrents.tar.gz
57M	./FusionInspector_Paper/STAR-Fusion_v1.7_TCGA_n_GTEx.tar.gz
68M	./FusionInspector_Paper
1.3G	./trinity_test_rnaseq_datasets/BT474.Right.fq.gz
8.2G	./trinity_test_rnaseq_datasets/SP2.all.Right.fq.bz2
1.3G	./trinity_test_rnaseq_datasets/BT474.Left.fq.gz
8.2G	./trinity_test_rnaseq_datasets/SP2.all.Left.fq.bz2
3.1G	./trinity_test_rnaseq_datasets/mouse.all.Right.fq.gz
3.0G	./trinity_test_rnaseq_datasets/mouse.all.Left.fq.gz
1.3G	./trinity_test_rnaseq_datasets/drosoph_50M.Right.fa.gz
1.4G	./trinity_test_rnaseq_datasets/drosoph_50M.Left.fa.gz
28G	./trinity_test_rnaseq_datasets
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32M	./SalamanderWeb/Axolotl.Trinity.CellReports2017.transdecoder.pep.gz
25M	./SalamanderWeb/Axo.rsem.genes.counts.wAnnot.matrix.gz
89K	./SalamanderWeb/blastema_enriched.TMM.fpkm.matrix
40M	./SalamanderWeb/Axo.rsem.isoforms.TMM.fpkm.wAnnot.matrix.gz
89K	./SalamanderWeb/blastema_enriched.TMM.fpkm.matrix.gct
1.6M	./SalamanderWeb/axolotl.tissueEnriched.TMM.fpkm.matrix.gct
30M	./SalamanderWeb/Axo.rsem.isoforms.counts.matrix.gz
24M	./SalamanderWeb/Axo.rsem.genes.counts.matrix.gz
34M	./SalamanderWeb/Axo.rsem.genes.TMM.fpkm.wAnnot.matrix.gz
317M	./SalamanderWeb/Axolotl.Trinity.CellReports2017.fasta.gz
34M	./SalamanderWeb/Axolotl.Trinity.CellReports2017.Trinotate.xls.gz
33M	./SalamanderWeb/Axo.rsem.isoforms.counts.wAnnot.matrix.gz
1.6M	./SalamanderWeb/axolotl.tissueEnriched.TMM.fpkm.matrix
38M	./SalamanderWeb/Axo.rsem.isoforms.TMM.fpkm.matrix.gz
20M	./SalamanderWeb/axolotlomics.gct
656M	./SalamanderWeb
5.6G	./VIF_PAPER/TCGA_resource_files.tar.gz
6.6G	./VIF_PAPER/simulated_viral_chimeric_reads.bmark_CTAT-VIF.tar.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B97.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B90.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B78.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B93.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B51.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B59.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B13.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B20.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B64.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B76.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B16.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B87.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B75.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B24.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B37.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B25.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B44.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B88.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B46.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B68.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B37.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B55.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B25.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B35.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B7.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B12.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B15.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B65.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B79.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B15.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B33.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B5.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B2.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B24.fasta.insertion_seqs.right_fq.gz
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2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B17.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B88.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B54.fasta.insertion_seqs.left_fq.gz
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2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B12.fasta.insertion_seqs.left_fq.gz
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2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B29.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B56.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B21.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B77.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B65.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B1.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B1.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B28.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B80.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B92.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B40.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B34.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B22.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B31.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B6.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B29.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B70.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B10.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B71.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B52.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B57.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B11.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B41.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B53.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B7.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B48.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B9.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B82.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B64.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B73.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B71.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B42.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B17.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B10.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B41.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B94.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B81.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B72.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B52.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B84.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B95.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B67.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B92.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B86.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B74.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B59.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B36.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B46.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B30.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B66.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B44.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B56.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B35.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B49.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B89.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B58.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B77.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B63.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B57.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B60.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B23.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B83.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B28.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B82.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B85.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B38.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B60.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B22.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B43.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B62.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B54.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B2.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B81.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B67.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B19.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B4.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B3.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B93.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B32.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B45.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B49.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B66.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B97.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B40.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B100.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B51.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B39.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B36.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B18.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B5.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B14.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B48.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B75.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B50.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B4.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B55.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B95.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B26.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B34.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B47.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B74.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B99.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B23.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B99.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B98.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B43.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B50.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B91.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B69.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B42.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B73.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B91.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B20.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B32.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B78.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B8.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B9.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B30.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B3.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B18.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B19.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B33.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B61.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B27.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B70.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B87.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B98.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B68.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B69.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B13.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B8.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B58.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B96.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B39.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B31.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B86.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B53.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B45.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B72.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B6.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B38.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B100.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B11.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B79.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B61.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B94.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B80.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B21.fasta.insertion_seqs.left_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B90.fasta.insertion_seqs.left_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B26.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B96.fasta.insertion_seqs.right_fq.gz
2.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B16.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B62.fasta.insertion_seqs.right_fq.gz
2.9M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022/July13RangeSim100batchesR150.B63.fasta.insertion_seqs.right_fq.gz
563M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR150_July132022
1.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B14.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B72.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B42.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B96.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B16.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B77.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B59.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B72.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B46.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B18.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B53.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B35.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B7.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B91.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B41.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B80.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B69.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B9.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B26.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B97.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B94.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B7.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B47.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B60.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B87.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B24.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B64.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B99.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B59.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B2.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B41.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B35.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B77.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B31.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B9.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B19.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B93.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B99.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B57.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B74.fasta.insertion_seqs.r50_2.fastq.gz
1.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B10.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B43.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B100.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B95.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B32.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B86.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B58.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B73.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B75.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B65.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B8.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B60.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B83.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B62.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B49.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B6.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B50.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B81.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B5.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B53.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B27.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B37.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B65.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B69.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B19.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B55.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B52.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B92.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B51.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B11.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B33.fasta.insertion_seqs.r50_2.fastq.gz
1.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B1.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B63.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B85.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B5.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B71.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B34.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B25.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B98.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B22.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B4.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B29.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B70.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B47.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B55.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B12.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B1.fasta.insertion_seqs.r50_1.fastq.gz
1.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B10.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B68.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B17.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B76.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B34.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B32.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B71.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B79.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B21.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B54.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B80.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B31.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B83.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B67.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B23.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B17.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B15.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B13.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B22.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B18.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B45.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B4.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B92.fasta.insertion_seqs.r50_2.fastq.gz
1.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B14.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B28.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B62.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B84.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B98.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B15.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B13.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B57.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B82.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B30.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B6.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B2.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B12.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B44.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B61.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B37.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B74.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B30.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B67.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B20.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B66.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B43.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B27.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B3.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B58.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B61.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B50.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B42.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B26.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B94.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B75.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B78.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B90.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B78.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B23.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B89.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B85.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B68.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B91.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B46.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B36.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B16.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B52.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B38.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B20.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B49.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B3.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B56.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B87.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B28.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B70.fasta.insertion_seqs.r50_1.fastq.gz
1.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B48.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B8.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B88.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B73.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B40.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B56.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B79.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B84.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B25.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B36.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B63.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B29.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B89.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B76.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B86.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B33.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B40.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B39.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B90.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B93.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B21.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B95.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B88.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B45.fasta.insertion_seqs.r50_2.fastq.gz
1.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B48.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B24.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B64.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B96.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B81.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B97.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B11.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B39.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B82.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B54.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B38.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B66.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B100.fasta.insertion_seqs.r50_2.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B51.fasta.insertion_seqs.r50_1.fastq.gz
1.8M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022/July13RangeSim100batchesR150.B44.fasta.insertion_seqs.r50_1.fastq.gz
349M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR50_July132022
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B45.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B24.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B15.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B76.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B61.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B30.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B57.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B32.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B41.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B55.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B63.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B57.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B28.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B7.fasta.insertion_seqs.r100_2.fastq.gz
2.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B44.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B66.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B41.fasta.insertion_seqs.r100_1.fastq.gz
2.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B65.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B8.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B39.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B77.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B88.fasta.insertion_seqs.r100_2.fastq.gz
2.3M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B48.fasta.insertion_seqs.r100_2.fastq.gz
2.3M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B97.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B75.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B99.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B12.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B72.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B49.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B87.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B42.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B79.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B94.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B91.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B77.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B59.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B69.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B22.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B20.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B26.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B94.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B96.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B21.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B38.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B53.fasta.insertion_seqs.r100_1.fastq.gz
2.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B85.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B80.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B84.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B87.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B45.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B16.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B90.fasta.insertion_seqs.r100_2.fastq.gz
2.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B65.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B95.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B50.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B11.fasta.insertion_seqs.r100_1.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B93.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B79.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B8.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B37.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B1.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B64.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B32.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B26.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B78.fasta.insertion_seqs.r100_1.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B47.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B5.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B86.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B36.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B89.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B64.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B27.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B15.fasta.insertion_seqs.r100_1.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B2.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B53.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B17.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B56.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B49.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B28.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B10.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B75.fasta.insertion_seqs.r100_1.fastq.gz
2.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B54.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B13.fasta.insertion_seqs.r100_1.fastq.gz
2.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B67.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B74.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B95.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B93.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B43.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B39.fasta.insertion_seqs.r100_1.fastq.gz
2.3M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B14.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B78.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B16.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B3.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B82.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B9.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B71.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B42.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B73.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B88.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B29.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B68.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B51.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B50.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B71.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B56.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B23.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B31.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B96.fasta.insertion_seqs.r100_1.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B1.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B27.fasta.insertion_seqs.r100_2.fastq.gz
2.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B70.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B38.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B34.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B52.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B23.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B29.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B89.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B33.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B46.fasta.insertion_seqs.r100_2.fastq.gz
2.3M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B48.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B83.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B9.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B13.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B76.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B30.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B62.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B82.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B100.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B22.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B40.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B21.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B7.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B36.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B18.fasta.insertion_seqs.r100_1.fastq.gz
2.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B54.fasta.insertion_seqs.r100_2.fastq.gz
2.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B85.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B40.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B6.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B60.fasta.insertion_seqs.r100_1.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B25.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B33.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B68.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B31.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B60.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B72.fasta.insertion_seqs.r100_1.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B25.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B4.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B91.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B11.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B100.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B62.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B58.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B3.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B73.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B98.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B92.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B37.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B98.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B59.fasta.insertion_seqs.r100_1.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B86.fasta.insertion_seqs.r100_2.fastq.gz
2.3M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B97.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B69.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B99.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B34.fasta.insertion_seqs.r100_1.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B35.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B4.fasta.insertion_seqs.r100_1.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B2.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B19.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B5.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B44.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B46.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B51.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B63.fasta.insertion_seqs.r100_1.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B10.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B6.fasta.insertion_seqs.r100_2.fastq.gz
2.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B70.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B47.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B92.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B58.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B55.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B24.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B20.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B52.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B81.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B74.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B12.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B43.fasta.insertion_seqs.r100_1.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B90.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B81.fasta.insertion_seqs.r100_2.fastq.gz
2.7M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B67.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B84.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B80.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B18.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B61.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B17.fasta.insertion_seqs.r100_2.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B66.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B14.fasta.insertion_seqs.r100_2.fastq.gz
2.5M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B19.fasta.insertion_seqs.r100_2.fastq.gz
2.4M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B35.fasta.insertion_seqs.r100_1.fastq.gz
2.6M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022/July13RangeSim100batchesR150.B83.fasta.insertion_seqs.r100_2.fastq.gz
501M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/RangeSim100batchesR100_July132022
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B5.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B92.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B43.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B82.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B29.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B20.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B18.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B42.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B98.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B83.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B45.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B58.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B55.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B91.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B12.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B30.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B26.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B46.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B39.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B35.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B14.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B2.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B100.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B88.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B79.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B31.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B74.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B25.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B44.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B81.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B68.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B67.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B95.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B89.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B94.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B6.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B52.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B8.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B73.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B62.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B69.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B66.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B36.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B9.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B54.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B70.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B32.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B99.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B50.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B53.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B22.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B75.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B33.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B56.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B60.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B93.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B16.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B24.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B37.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B97.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B63.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B49.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B13.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B3.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B59.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B90.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B76.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B23.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B57.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B87.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B7.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B71.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B21.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B17.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B41.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B72.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B34.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B27.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B64.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B78.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B84.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B80.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B77.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B19.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B51.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B1.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B85.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B28.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B10.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B40.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B38.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B96.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B47.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B86.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B48.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B65.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B4.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B61.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B11.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences/July13RangeSim100batchesR150.B15.fasta.insertion_seqs.fa.gz
105M	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage/simulated_insertion_template_sequences
1.5G	./VIF_PAPER/simulated_viral_chimeric_reads/variable_coverage
9.8M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR150_July122022/July12Sim100batchesR150.B59.fasta.insertion_seqs.left_fq.gz
9.8M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR150_July122022/July12Sim100batchesR150.B64.fasta.insertion_seqs.left_fq.gz
9.8M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR150_July122022/July12Sim100batchesR150.B36.fasta.insertion_seqs.left_fq.gz
9.8M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR150_July122022/July12Sim100batchesR150.B88.fasta.insertion_seqs.left_fq.gz
9.8M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR150_July122022/July12Sim100batchesR150.B31.fasta.insertion_seqs.right_fq.gz
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9.8M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR150_July122022/July12Sim100batchesR150.B97.fasta.insertion_seqs.right_fq.gz
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9.8M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR150_July122022/July12Sim100batchesR150.B87.fasta.insertion_seqs.right_fq.gz
9.8M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR150_July122022/July12Sim100batchesR150.B45.fasta.insertion_seqs.right_fq.gz
9.8M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR150_July122022/July12Sim100batchesR150.B64.fasta.insertion_seqs.right_fq.gz
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9.8M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR150_July122022/July12Sim100batchesR150.B56.fasta.insertion_seqs.left_fq.gz
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9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B51.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B81.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B6.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B98.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B47.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B1.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B94.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B86.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B61.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B22.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B35.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B69.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B6.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B80.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B100.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B49.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B4.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B47.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B79.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B89.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B43.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B25.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B30.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B2.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B18.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B53.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B94.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B82.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B85.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B55.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B43.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B22.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B82.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B23.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B90.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B20.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B51.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B21.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B97.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B41.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B18.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B53.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B19.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B17.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B10.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B83.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B12.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B88.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B88.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B76.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B38.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B66.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B90.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B62.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B65.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B63.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B71.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B70.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B54.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B37.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B28.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B16.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B77.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B32.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B63.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B93.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B23.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B24.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B62.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B31.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B2.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B68.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B46.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B4.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B58.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B5.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B12.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B29.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B24.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B15.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B11.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B72.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B96.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B92.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B83.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B20.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B81.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B29.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B14.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B84.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B41.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B55.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B7.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B95.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B92.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B80.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B58.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B13.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B14.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B64.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B77.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B100.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B60.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B49.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B99.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B91.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B54.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B1.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B26.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B39.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B66.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B37.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B3.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B19.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B75.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B74.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B89.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B98.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B34.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B27.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B61.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B38.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B42.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B33.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B73.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B59.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B31.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B97.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B91.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B42.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B5.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B57.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B74.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B44.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B3.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B8.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B96.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B45.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B21.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B10.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B86.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B30.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B50.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B26.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B48.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B48.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B56.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B57.fasta.insertion_seqs.r100_1.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B11.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B36.fasta.insertion_seqs.r100_2.fastq.gz
9.2M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022/July12Sim100batchesR150.B76.fasta.insertion_seqs.r100_2.fastq.gz
1.8G	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/sim100batchesR100_July122022
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B12.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B93.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B50.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B98.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B91.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B15.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B10.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B21.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B97.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B3.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B92.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B80.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B64.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B71.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B62.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B66.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B51.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B7.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B88.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B26.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B95.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B94.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B35.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B30.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B25.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B29.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B46.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B81.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B19.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B69.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B70.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B31.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B99.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B28.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B57.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B61.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B22.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B2.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B86.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B11.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B65.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B48.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B54.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B18.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B27.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B96.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B68.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B38.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B83.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B24.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B79.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B17.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B44.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B60.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B78.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B74.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B59.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B76.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B58.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B45.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B36.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B4.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B39.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B13.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B72.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B75.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B82.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B43.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B85.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B9.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B49.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B34.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B23.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B84.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B52.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B16.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B77.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B55.fasta.insertion_seqs.fa.gz
1.1M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences/July12Sim100batchesR150.B1.fasta.insertion_seqs.fa.gz
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105M	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage/simulated_insertion_template_sequences
5.4G	./VIF_PAPER/simulated_viral_chimeric_reads/uniform_coverage
6.9G	./VIF_PAPER/simulated_viral_chimeric_reads
36M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking.tar.gz
39M	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Mucosa.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
168M	./VIF_PAPER/TCGA_resource_files/TCGA-STAD.htseq_fpkm-uq.genesyms.tsv.gz
29M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Caudate_basal_ganglia.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Anterior_cingulate_cortex_BA24.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
3.1M	./VIF_PAPER/TCGA_resource_files/GTEx.Bladder.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
25M	./VIF_PAPER/TCGA_resource_files/TCGA-PAAD.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Prostate.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
5.3M	./VIF_PAPER/TCGA_resource_files/TCGA-BLCA.cnv.tsv.gz
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Liver.tpm.matrix.gz.UQnorm.gz.sample_names
657K	./VIF_PAPER/TCGA_resource_files/GTEx.Muscle_Skeletal.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Hippocampus.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
21M	./VIF_PAPER/TCGA_resource_files/GTEx.Prostate.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
76M	./VIF_PAPER/TCGA_resource_files/TCGA-LUSC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
19M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Spinal_cord_cervical_c-1.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
57K	./VIF_PAPER/TCGA_resource_files/TCGA-CESC.htseq_fpkm-uq.genesyms.tsv.gz.sample_names
17M	./VIF_PAPER/TCGA_resource_files/GTEx.Uterus.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cortex.tpm.matrix.gz.UQnorm.gz.sample_names
20M	./VIF_PAPER/TCGA_resource_files/GTEx.Spleen.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
44M	./VIF_PAPER/TCGA_resource_files/GTEx.Lung.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Nucleus_accumbens_basal_ganglia.tpm.matrix.gz.UQnorm.gz.sample_names
16M	./VIF_PAPER/TCGA_resource_files/GTEx.Ovary.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
657K	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Tibial.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/TCGA-SARC.htseq_fpkm-uq.genesyms.tsv.gz.sample_names
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Pancreas.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Hypothalamus.tpm.matrix.gz.UQnorm.gz.sample_names
1.6M	./VIF_PAPER/TCGA_resource_files/GTEx.Kidney_Medulla.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
25M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Frontal_Cortex_BA9.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
14M	./VIF_PAPER/TCGA_resource_files/GTEx.Minor_Salivary_Gland.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
673K	./VIF_PAPER/TCGA_resource_files/TCGA-STAD.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cerebellar_Hemisphere.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
809K	./VIF_PAPER/TCGA_resource_files/GTEx.Fallopian_Tube.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Substantia_nigra.tpm.matrix.gz.UQnorm.gz.sample_names
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Frontal_Cortex_BA9.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
23M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Hippocampus.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
16M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Hypothalamus.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Vagina.tpm.matrix.gz.UQnorm.gz.sample_names
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Uterus.tpm.matrix.gz.UQnorm.gz.sample_names
873K	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Mucosa.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Cells_EBV-transformed_lymphocytes.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
34M	./VIF_PAPER/TCGA_resource_files/TCGA-LIHC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz
17M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Frontal_Cortex_BA9.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
73M	./VIF_PAPER/TCGA_resource_files/TCGA-LGG.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
441K	./VIF_PAPER/TCGA_resource_files/cnv_info.bedlike.tsv.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Amygdala.tpm.matrix.gz.UQnorm.gz.sample_names
24M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Hypothalamus.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Pancreas.tpm.matrix.gz.UQnorm.gz.sample_names
24M	./VIF_PAPER/TCGA_resource_files/TCGA-SARC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz
76M	./VIF_PAPER/TCGA_resource_files/GTEx.Thyroid.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
881K	./VIF_PAPER/TCGA_resource_files/GTEx.Skin_Sun_Exposed_Lower_leg.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
37M	./VIF_PAPER/TCGA_resource_files/TCGA-BLCA.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz
18M	./VIF_PAPER/TCGA_resource_files/GTEx.Vagina.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Colon_Sigmoid.tpm.matrix.gz.UQnorm.gz.sample_names
657K	./VIF_PAPER/TCGA_resource_files/TCGA-UCEC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.tbi
20M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cortex.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
657K	./VIF_PAPER/TCGA_resource_files/GTEx.Whole_Blood.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
1.9M	./VIF_PAPER/TCGA_resource_files/GTEx.Cervix_Ectocervix.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
22M	./VIF_PAPER/TCGA_resource_files/GTEx.Small_Intestine_Terminal_Ileum.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
7.0M	./VIF_PAPER/TCGA_resource_files/TCGA-LUSC.cnv.tsv.gz
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Thyroid.tpm.matrix.gz.UQnorm.gz.sample_names
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Small_Intestine_Terminal_Ileum.tpm.matrix.gz.UQnorm.gz.sample_names
78M	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Tibial.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
657K	./VIF_PAPER/TCGA_resource_files/GTEx.Adipose_Subcutaneous.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Gastroesophageal_Junction.tpm.matrix.gz.UQnorm.gz.sample_names
3.7M	./VIF_PAPER/TCGA_resource_files/TCGA-SARC.cnv.tsv.gz
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Kidney_Medulla.tpm.matrix.gz.UQnorm.gz.sample_names
5.2M	./VIF_PAPER/TCGA_resource_files/TCGA-HNSC.cnv.tsv.gz
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Spleen.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Prostate.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
18M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cerebellar_Hemisphere.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Frontal_Cortex_BA9.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
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4.9M	./VIF_PAPER/TCGA_resource_files/TCGA-KIRC.cnv.tsv.gz
657K	./VIF_PAPER/TCGA_resource_files/GTEx.Thyroid.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
20M	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Coronary.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
88M	./VIF_PAPER/TCGA_resource_files/GTEx.Whole_Blood.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
18M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Amygdala.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cerebellum.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Kidney_Cortex.tpm.matrix.gz.UQnorm.gz.sample_names
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cortex.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
1.6M	./VIF_PAPER/TCGA_resource_files/TCGA-PAAD.cnv.tsv.gz
24M	./VIF_PAPER/TCGA_resource_files/GTEx.Pituitary.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Skin_Not_Sun_Exposed_Suprapubic.tpm.matrix.gz.UQnorm.gz.sample_names
993K	./VIF_PAPER/TCGA_resource_files/TCGA-UCEC.cnv.tsv.gz
16M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Hippocampus.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Heart_Left_Ventricle.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
849K	./VIF_PAPER/TCGA_resource_files/GTEx.Kidney_Cortex.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
44M	./VIF_PAPER/TCGA_resource_files/GTEx.Whole_Blood.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
31M	./VIF_PAPER/TCGA_resource_files/GTEx.Colon_Transverse.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cerebellar_Hemisphere.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
657K	./VIF_PAPER/TCGA_resource_files/GTEx.Lung.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Spleen.tpm.matrix.gz.UQnorm.gz.sample_names
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57K	./VIF_PAPER/TCGA_resource_files/GTEx.Ovary.tpm.matrix.gz.UQnorm.gz.sample_names
46M	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Tibial.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
25M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cerebellar_Hemisphere.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Heart_Atrial_Appendage.tpm.matrix.gz.UQnorm.gz.sample_names
57K	./VIF_PAPER/TCGA_resource_files/TCGA-UCEC.htseq_fpkm-uq.genesyms.tsv.gz.sample_names
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Adipose_Subcutaneous.tpm.matrix.gz.UQnorm.gz.sample_names
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Coronary.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
681K	./VIF_PAPER/TCGA_resource_files/TCGA-LGG.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Spinal_cord_cervical_c-1.tpm.matrix.gz.UQnorm.gz.sample_names
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Caudate_basal_ganglia.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
865K	./VIF_PAPER/TCGA_resource_files/GTEx.Testis.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
7.6M	./VIF_PAPER/TCGA_resource_files/TCGA-UCEC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
46M	./VIF_PAPER/TCGA_resource_files/TCGA-LGG.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz
12M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Substantia_nigra.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
673K	./VIF_PAPER/TCGA_resource_files/TCGA-BLCA.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.tbi
30M	./VIF_PAPER/TCGA_resource_files/GTEx.Adrenal_Gland.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
20M	./VIF_PAPER/TCGA_resource_files/GTEx.Ovary.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Fallopian_Tube.tpm.matrix.gz.UQnorm.gz.sample_names
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Cervix_Ectocervix.tpm.matrix.gz.UQnorm.gz.sample_names
56M	./VIF_PAPER/TCGA_resource_files/TCGA-STAD.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Vagina.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Pituitary.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
18M	./VIF_PAPER/TCGA_resource_files/TCGA-PAAD.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Coronary.tpm.matrix.gz.UQnorm.gz.sample_names
35M	./VIF_PAPER/TCGA_resource_files/GTEx.Testis.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
657K	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Mucosa.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/TCGA-LGG.htseq_fpkm-uq.genesyms.tsv.gz.sample_names
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Adrenal_Gland.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
681K	./VIF_PAPER/TCGA_resource_files/TCGA-LGG.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
2.1M	./VIF_PAPER/TCGA_resource_files/GTEx.Fallopian_Tube.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Amygdala.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
793K	./VIF_PAPER/TCGA_resource_files/GTEx.Kidney_Medulla.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Muscularis.tpm.matrix.gz.UQnorm.gz.sample_names
865K	./VIF_PAPER/TCGA_resource_files/GTEx.Heart_Atrial_Appendage.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
89K	./VIF_PAPER/TCGA_resource_files/TCGA-KIRC.htseq_fpkm-uq.genesyms.tsv.gz.sample_names
873K	./VIF_PAPER/TCGA_resource_files/GTEx.Lung.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
39M	./VIF_PAPER/TCGA_resource_files/GTEx.Adipose_Visceral_Omentum.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
35M	./VIF_PAPER/TCGA_resource_files/GTEx.Breast_Mammary_Tissue.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
657K	./VIF_PAPER/TCGA_resource_files/GTEx.Adipose_Visceral_Omentum.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Nucleus_accumbens_basal_ganglia.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Frontal_Cortex_BA9.tpm.matrix.gz.UQnorm.gz.sample_names
7.7M	./VIF_PAPER/TCGA_resource_files/GTEx.Kidney_Cortex.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Nucleus_accumbens_basal_ganglia.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
78M	./VIF_PAPER/TCGA_resource_files/GTEx.Adipose_Subcutaneous.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
57K	./VIF_PAPER/TCGA_resource_files/TCGA-BLCA.htseq_fpkm-uq.genesyms.tsv.gz.sample_names
14M	./VIF_PAPER/TCGA_resource_files/GTEx.Vagina.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
681K	./VIF_PAPER/TCGA_resource_files/TCGA-HNSC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
34M	./VIF_PAPER/TCGA_resource_files/GTEx.Cells_Cultured_fibroblasts.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
5.2M	./VIF_PAPER/TCGA_resource_files/TCGA-STAD.cnv.tsv.gz
32M	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Aorta.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
12M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Amygdala.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
30M	./VIF_PAPER/TCGA_resource_files/GTEx.Heart_Atrial_Appendage.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
44M	./VIF_PAPER/TCGA_resource_files/GTEx.Colon_Sigmoid.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Prostate.tpm.matrix.gz.UQnorm.gz.sample_names
625K	./VIF_PAPER/TCGA_resource_files/GTEx.Bladder.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
2.1M	./VIF_PAPER/TCGA_resource_files/GTEx.Cervix_Ectocervix.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
13M	./VIF_PAPER/TCGA_resource_files/GTEx.Uterus.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
873K	./VIF_PAPER/TCGA_resource_files/GTEx.Thyroid.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
3.3M	./VIF_PAPER/TCGA_resource_files/TCGA-CESC.cnv.tsv.gz
34M	./VIF_PAPER/TCGA_resource_files/GTEx.Pituitary.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
88M	./VIF_PAPER/TCGA_resource_files/TCGA-SARC.htseq_fpkm-uq.genesyms.tsv.gz
48M	./VIF_PAPER/TCGA_resource_files/GTEx.Adipose_Subcutaneous.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Adipose_Visceral_Omentum.tpm.matrix.gz.UQnorm.gz.sample_names
40M	./VIF_PAPER/TCGA_resource_files/cnv_info.bedlike.tsv.gz
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Liver.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
28M	./VIF_PAPER/TCGA_resource_files/GTEx.Colon_Sigmoid.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
46M	./VIF_PAPER/TCGA_resource_files/TCGA-HNSC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz
9.3M	./VIF_PAPER/TCGA_resource_files/GTEx.Kidney_Cortex.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Stomach.tpm.matrix.gz.UQnorm.gz.sample_names
673K	./VIF_PAPER/TCGA_resource_files/TCGA-CESC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
873K	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Muscularis.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
28M	./VIF_PAPER/TCGA_resource_files/GTEx.Heart_Left_Ventricle.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
28M	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Gastroesophageal_Junction.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
865K	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Gastroesophageal_Junction.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
145M	./VIF_PAPER/TCGA_resource_files/TCGA-BLCA.htseq_fpkm-uq.genesyms.tsv.gz
68M	./VIF_PAPER/TCGA_resource_files/GTEx.Lung.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Lung.tpm.matrix.gz.UQnorm.gz.sample_names
47M	./VIF_PAPER/TCGA_resource_files/GTEx.Nerve_Tibial.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
27M	./VIF_PAPER/TCGA_resource_files/GTEx.Stomach.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
617K	./VIF_PAPER/TCGA_resource_files/GTEx.Fallopian_Tube.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
93M	./VIF_PAPER/TCGA_resource_files/GTEx.Muscle_Skeletal.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
809K	./VIF_PAPER/TCGA_resource_files/GTEx.Cervix_Endocervix.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cortex.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
44M	./VIF_PAPER/TCGA_resource_files/GTEx.Skin_Not_Sun_Exposed_Suprapubic.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
665K	./VIF_PAPER/TCGA_resource_files/TCGA-PAAD.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.tbi
1.9M	./VIF_PAPER/TCGA_resource_files/GTEx.Fallopian_Tube.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Testis.tpm.matrix.gz.UQnorm.gz.sample_names
49M	./VIF_PAPER/TCGA_resource_files/TCGA-LUSC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz
16M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Putamen_basal_ganglia.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Spinal_cord_cervical_c-1.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
220M	./VIF_PAPER/TCGA_resource_files/TCGA-KIRC.htseq_fpkm-uq.genesyms.tsv.gz
19M	./VIF_PAPER/TCGA_resource_files/GTEx.Minor_Salivary_Gland.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Caudate_basal_ganglia.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Cells_Cultured_fibroblasts.tpm.matrix.gz.UQnorm.gz.sample_names
89K	./VIF_PAPER/TCGA_resource_files/TCGA-HNSC.htseq_fpkm-uq.genesyms.tsv.gz.sample_names
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Hypothalamus.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
51M	./VIF_PAPER/TCGA_resource_files/GTEx.Heart_Atrial_Appendage.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
65M	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Mucosa.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
657K	./VIF_PAPER/TCGA_resource_files/GTEx.Skin_Sun_Exposed_Lower_leg.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
42M	./VIF_PAPER/TCGA_resource_files/TCGA-STAD.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz
16M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Substantia_nigra.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Amygdala.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cerebellum.tpm.matrix.gz.UQnorm.gz.sample_names
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Minor_Salivary_Gland.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
1.9M	./VIF_PAPER/TCGA_resource_files/GTEx.Cervix_Endocervix.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Minor_Salivary_Gland.tpm.matrix.gz.UQnorm.gz.sample_names
1.7M	./VIF_PAPER/TCGA_resource_files/GTEx.Kidney_Medulla.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
27M	./VIF_PAPER/TCGA_resource_files/GTEx.Liver.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
58M	./VIF_PAPER/TCGA_resource_files/TCGA-LIHC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Uterus.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
28M	./VIF_PAPER/TCGA_resource_files/GTEx.Spleen.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
121K	./VIF_PAPER/TCGA_resource_files/GTEx.Whole_Blood.tpm.matrix.gz.UQnorm.gz.sample_names
59M	./VIF_PAPER/TCGA_resource_files/TCGA-BLCA.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
21M	./VIF_PAPER/TCGA_resource_files/TCGA-UCEC.htseq_fpkm-uq.genesyms.tsv.gz
83M	./VIF_PAPER/TCGA_resource_files/TCGA-KIRC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
57K	./VIF_PAPER/TCGA_resource_files/TCGA-STAD.htseq_fpkm-uq.genesyms.tsv.gz.sample_names
865K	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Aorta.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Putamen_basal_ganglia.tpm.matrix.gz.UQnorm.gz.sample_names
28M	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Coronary.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
2.3M	./VIF_PAPER/TCGA_resource_files/GTEx.Cervix_Endocervix.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
665K	./VIF_PAPER/TCGA_resource_files/TCGA-CESC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.tbi
43M	./VIF_PAPER/TCGA_resource_files/GTEx.Testis.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
657K	./VIF_PAPER/TCGA_resource_files/GTEx.Nerve_Tibial.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
183M	./VIF_PAPER/TCGA_resource_files/TCGA-HNSC.htseq_fpkm-uq.genesyms.tsv.gz
71M	./VIF_PAPER/TCGA_resource_files/GTEx.Skin_Not_Sun_Exposed_Suprapubic.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Putamen_basal_ganglia.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Pituitary.tpm.matrix.gz.UQnorm.gz.sample_names
3.7M	./VIF_PAPER/TCGA_resource_files/TCGA-LIHC.cnv.tsv.gz
28M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cerebellum.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
197M	./VIF_PAPER/TCGA_resource_files/TCGA-LUSC.htseq_fpkm-uq.genesyms.tsv.gz
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Cells_EBV-transformed_lymphocytes.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
121K	./VIF_PAPER/TCGA_resource_files/GTEx.Muscle_Skeletal.tpm.matrix.gz.UQnorm.gz.sample_names
51M	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Aorta.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Ovary.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
42M	./VIF_PAPER/TCGA_resource_files/TCGA-CESC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
36M	./VIF_PAPER/TCGA_resource_files/TCGA-SARC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Breast_Mammary_Tissue.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cerebellar_Hemisphere.tpm.matrix.gz.UQnorm.gz.sample_names
4.0M	./VIF_PAPER/TCGA_resource_files/TCGA-LGG.cnv.tsv.gz
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Hippocampus.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Caudate_basal_ganglia.tpm.matrix.gz.UQnorm.gz.sample_names
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Coronary.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
657K	./VIF_PAPER/TCGA_resource_files/TCGA-UCEC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Adrenal_Gland.tpm.matrix.gz.UQnorm.gz.sample_names
48M	./VIF_PAPER/TCGA_resource_files/GTEx.Colon_Transverse.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Adrenal_Gland.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
673K	./VIF_PAPER/TCGA_resource_files/TCGA-LIHC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.tbi
82M	./VIF_PAPER/TCGA_resource_files/GTEx.Skin_Sun_Exposed_Lower_leg.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
29M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Nucleus_accumbens_basal_ganglia.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Testis.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
22M	./VIF_PAPER/TCGA_resource_files/GTEx.Pancreas.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
873K	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Tibial.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
873K	./VIF_PAPER/TCGA_resource_files/GTEx.Adipose_Subcutaneous.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/TCGA-LIHC.htseq_fpkm-uq.genesyms.tsv.gz.sample_names
89K	./VIF_PAPER/TCGA_resource_files/TCGA-LUSC.htseq_fpkm-uq.genesyms.tsv.gz.sample_names
42M	./VIF_PAPER/TCGA_resource_files/GTEx.Stomach.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Anterior_cingulate_cortex_BA24.tpm.matrix.gz.UQnorm.gz.sample_names
681K	./VIF_PAPER/TCGA_resource_files/TCGA-LUSC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.tbi
865K	./VIF_PAPER/TCGA_resource_files/GTEx.Breast_Mammary_Tissue.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Cervix_Endocervix.tpm.matrix.gz.UQnorm.gz.sample_names
75M	./VIF_PAPER/TCGA_resource_files/TCGA-HNSC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Nerve_Tibial.tpm.matrix.gz.UQnorm.gz.sample_names
30M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cortex.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
21M	./VIF_PAPER/TCGA_resource_files/GTEx.Cells_EBV-transformed_lymphocytes.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
16M	./VIF_PAPER/TCGA_resource_files/GTEx.Liver.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
681K	./VIF_PAPER/TCGA_resource_files/TCGA-KIRC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.tbi
20M	./VIF_PAPER/TCGA_resource_files/GTEx.Adrenal_Gland.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
51M	./VIF_PAPER/TCGA_resource_files/GTEx.Heart_Left_Ventricle.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
865K	./VIF_PAPER/TCGA_resource_files/GTEx.Colon_Sigmoid.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
849K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Substantia_nigra.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Vagina.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
665K	./VIF_PAPER/TCGA_resource_files/TCGA-PAAD.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
617K	./VIF_PAPER/TCGA_resource_files/GTEx.Cervix_Endocervix.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
16M	./VIF_PAPER/TCGA_resource_files/GTEx.Small_Intestine_Terminal_Ileum.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
873K	./VIF_PAPER/TCGA_resource_files/GTEx.Skin_Not_Sun_Exposed_Suprapubic.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
681K	./VIF_PAPER/TCGA_resource_files/TCGA-KIRC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Spleen.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
673K	./VIF_PAPER/TCGA_resource_files/TCGA-HNSC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.tbi
673K	./VIF_PAPER/TCGA_resource_files/TCGA-LIHC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
873K	./VIF_PAPER/TCGA_resource_files/GTEx.Nerve_Tibial.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Spinal_cord_cervical_c-1.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
64M	./VIF_PAPER/TCGA_resource_files/GTEx.Adipose_Visceral_Omentum.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
20M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cerebellum.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Substantia_nigra.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
673K	./VIF_PAPER/TCGA_resource_files/TCGA-BLCA.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
849K	./VIF_PAPER/TCGA_resource_files/GTEx.Uterus.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Heart_Atrial_Appendage.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
809K	./VIF_PAPER/TCGA_resource_files/GTEx.Cervix_Ectocervix.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Kidney_Cortex.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
617K	./VIF_PAPER/TCGA_resource_files/GTEx.Cervix_Ectocervix.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Gastroesophageal_Junction.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Cerebellum.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
665K	./VIF_PAPER/TCGA_resource_files/TCGA-SARC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.tbi
121K	./VIF_PAPER/TCGA_resource_files/GTEx.Skin_Sun_Exposed_Lower_leg.tpm.matrix.gz.UQnorm.gz.sample_names
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Tibial.tpm.matrix.gz.UQnorm.gz.sample_names
13M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Spinal_cord_cervical_c-1.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
57K	./VIF_PAPER/TCGA_resource_files/TCGA-PAAD.htseq_fpkm-uq.genesyms.tsv.gz.sample_names
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Small_Intestine_Terminal_Ileum.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
673K	./VIF_PAPER/TCGA_resource_files/TCGA-SARC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
657K	./VIF_PAPER/TCGA_resource_files/GTEx.Skin_Not_Sun_Exposed_Suprapubic.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Ovary.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Muscularis.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
881K	./VIF_PAPER/TCGA_resource_files/GTEx.Whole_Blood.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
44M	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Gastroesophageal_Junction.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Colon_Transverse.tpm.matrix.gz.UQnorm.gz.sample_names
54M	./VIF_PAPER/TCGA_resource_files/TCGA-KIRC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz
825K	./VIF_PAPER/TCGA_resource_files/GTEx.Bladder.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
873K	./VIF_PAPER/TCGA_resource_files/GTEx.Adipose_Visceral_Omentum.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
73M	./VIF_PAPER/TCGA_resource_files/GTEx.Nerve_Tibial.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
60M	./VIF_PAPER/TCGA_resource_files/GTEx.Cells_Cultured_fibroblasts.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
21M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Anterior_cingulate_cortex_BA24.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
188M	./VIF_PAPER/TCGA_resource_files/TCGA-LGG.htseq_fpkm-uq.genesyms.tsv.gz
61M	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Muscularis.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Small_Intestine_Terminal_Ileum.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Hypothalamus.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Anterior_cingulate_cortex_BA24.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
865K	./VIF_PAPER/TCGA_resource_files/GTEx.Pancreas.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
39M	./VIF_PAPER/TCGA_resource_files/GTEx.Pancreas.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
3.2M	./VIF_PAPER/TCGA_resource_files/GTEx.Bladder.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Aorta.tpm.matrix.gz.UQnorm.gz.sample_names
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Cells_Cultured_fibroblasts.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
19M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Caudate_basal_ganglia.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
54M	./VIF_PAPER/TCGA_resource_files/GTEx.Breast_Mammary_Tissue.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
849K	./VIF_PAPER/TCGA_resource_files/GTEx.Minor_Salivary_Gland.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
881K	./VIF_PAPER/TCGA_resource_files/GTEx.Muscle_Skeletal.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Breast_Mammary_Tissue.tpm.matrix.gz.UQnorm.gz.sample_names
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Bladder.tpm.matrix.gz.UQnorm.gz.sample_names
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Stomach.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Mucosa.tpm.matrix.gz.UQnorm.gz.sample_names
50M	./VIF_PAPER/TCGA_resource_files/GTEx.Thyroid.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
673K	./VIF_PAPER/TCGA_resource_files/TCGA-STAD.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.tbi
28M	./VIF_PAPER/TCGA_resource_files/TCGA-CESC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz
64M	./VIF_PAPER/TCGA_resource_files/TCGA-PAAD.htseq_fpkm-uq.genesyms.tsv.gz
857K	./VIF_PAPER/TCGA_resource_files/GTEx.Liver.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
89K	./VIF_PAPER/TCGA_resource_files/GTEx.Heart_Left_Ventricle.tpm.matrix.gz.UQnorm.gz.sample_names
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Cells_EBV-transformed_lymphocytes.tpm.matrix.gz.UQnorm.gz.sample_names
57K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Hippocampus.tpm.matrix.gz.UQnorm.gz.sample_names
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Colon_Transverse.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
609K	./VIF_PAPER/TCGA_resource_files/GTEx.Kidney_Medulla.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
24M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Putamen_basal_ganglia.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
14M	./VIF_PAPER/TCGA_resource_files/GTEx.Cells_EBV-transformed_lymphocytes.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
641K	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Putamen_basal_ganglia.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
49M	./VIF_PAPER/TCGA_resource_files/GTEx.Muscle_Skeletal.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
865K	./VIF_PAPER/TCGA_resource_files/GTEx.Heart_Left_Ventricle.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Pituitary.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
19M	./VIF_PAPER/TCGA_resource_files/GTEx.Brain_Nucleus_accumbens_basal_ganglia.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
865K	./VIF_PAPER/TCGA_resource_files/GTEx.Colon_Transverse.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
37M	./VIF_PAPER/TCGA_resource_files/GTEx.Esophagus_Muscularis.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Artery_Aorta.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
873K	./VIF_PAPER/TCGA_resource_files/GTEx.Cells_Cultured_fibroblasts.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
649K	./VIF_PAPER/TCGA_resource_files/GTEx.Colon_Sigmoid.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.tbi
51M	./VIF_PAPER/TCGA_resource_files/GTEx.Skin_Sun_Exposed_Lower_leg.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz
681K	./VIF_PAPER/TCGA_resource_files/TCGA-LUSC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz.tbi
28M	./VIF_PAPER/TCGA_resource_files/GTEx.Prostate.tpm.matrix.gz.UQnorm.gz.gene_expr_gene_span_list.sorted.gz.quantiles.bed.gz
6.9M	./VIF_PAPER/TCGA_resource_files/TCGA-UCEC.htseq_fpkm-uq.genesyms.tsv.gz.gene_expr_gene_span_list.sorted.gz
5.6G	./VIF_PAPER/TCGA_resource_files
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV16.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV31.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV35.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV31.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV31.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV18.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV33.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV33.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV33.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV18.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV35.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV16.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV31.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV39.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV39.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV39.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV16.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV39.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV45.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV35.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV16.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV45.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV33.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV18.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV45.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV35.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV18.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV33.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV18.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV35.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV31.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV39.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV16.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV45.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV31.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV39.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV33.insertion_seqs_2.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV45.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV18.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep3.HPV45.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep1.HPV35.insertion_seqs_1.fq.gz
1.2M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking/rep2.HPV16.insertion_seqs_1.fq.gz
48M	./VIF_PAPER/hpv_sim_insertions_for_comparative_bmarking
25G	./VIF_PAPER
2.0G	./TRINOTATE_SINGULARITY/trinotate.v4.0.2.simg
2.0G	./TRINOTATE_SINGULARITY
1.3G	./Edgren_samples/BT474.Right.fq.gz
1.1G	./Edgren_samples/SKBR3.Left.fq.gz
429M	./Edgren_samples/NormalBreast.Left.fq.gz
387M	./Edgren_samples/KPL4.Left.fq.gz
1.3G	./Edgren_samples/BT474.Left.fq.gz
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57K	./CTAT_FUSIONTRANS_BENCHMARKING/on_cancer_cell_lines/samples/G41682.KYSE-510.5/TRINITY_FUSION_D_hg19/TrinityFusion-D.fusion_predictions.tsv
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153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_cancer_cell_lines/samples/G41682.KYSE-510.5/ARRIBA
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377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_cancer_cell_lines/samples/G26175.A172.2/ARRIBA
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2.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/FUSION_CATCHER_V0994e/FusionCatcher_outdir
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16M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/CHIMPIPE/chimericJunctions_chimpipe.txt
16M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/CHIMPIPE
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/TRINITY_FUSION_C_hg19/TrinityFusion-C.fusion_predictions.tsv
409K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/TRINITY_FUSION_C_hg19
6.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/PIZZLY/pizzly_out.json.gz
7.0M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/PIZZLY
633K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/MAPSPLICE/fusions_well_annotated.txt
665K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/MAPSPLICE
577K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
609K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir
642K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/FUSIONCATCHER_v1.10_June192019
345K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/JAFFA_ASSEMBLY/jaffa_results.csv
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/JAFFA_ASSEMBLY
1.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/DEFUSE/results.filtered.tsv
1.4M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/DEFUSE
633K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/ERICSCRIPT/ericscript_outdir/MyEric.results.filtered.tsv
665K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/ERICSCRIPT/ericscript_outdir
698K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/ERICSCRIPT
569K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/STARCHIP_csm10_pGm2_May012019/starchip.summary
601K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/STARCHIP_csm10_pGm2_May012019
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/INFUSION_CF3/infusion_output/fusions.txt
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/INFUSION_CF3/infusion_output
282K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/INFUSION_CF3
345K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/JAFFA_HYBRID/jaffa_results.csv
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/JAFFA_HYBRID
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/PRADA/prada_fusions/prada.fus.summary.txt
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/PRADA/prada_fusions
250K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads/PRADA
50M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim2_reads
441K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/JAFFA_DIRECT/jaffa_results.csv
473K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/JAFFA_DIRECT
1.6M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/NFUSE/rna.results.tsv
1.7M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/NFUSE
1.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/STARSEQR_STAR-SEQR/STARSEQR_STAR-SEQR_breakpoints.txt
1.4M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/STARSEQR_STAR-SEQR
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/SOAP_FUSE/final_fusion_genes/sample/sample.final.Fusion.specific.for.genes
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/SOAP_FUSE/final_fusion_genes/sample
250K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/SOAP_FUSE/final_fusion_genes
282K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/SOAP_FUSE
345K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/TRINITY_FUSION_UC_hg19/TrinityFusion-UC.fusion_predictions.tsv
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/TRINITY_FUSION_UC_hg19
6.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/CHIMERASCAN/chimeras.bedpe
6.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/CHIMERASCAN
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/TRINITY_FUSION_D_hg19/TrinityFusion-D.fusion_predictions.tsv
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/TRINITY_FUSION_D_hg19
7.0M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/FUSIONHUNTER/FusionHunter.fusion
7.0M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/FUSIONHUNTER
1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/ARRIBA/fusions.tsv
1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/ARRIBA
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/TOPHAT_FUSION/tophatfusion_out/result.txt
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/TOPHAT_FUSION/tophatfusion_out
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/TOPHAT_FUSION
505K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/STAR_FUSION_v1.5_hg19_Apr042019/star-fusion.fusion_predictions.abridged.tsv
537K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/STAR_FUSION_v1.5_hg19_Apr042019
1.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/FUSION_CATCHER_V0994e/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
1.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/FUSION_CATCHER_V0994e/FusionCatcher_outdir
2.0M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/FUSION_CATCHER_V0994e
21M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/CHIMPIPE/chimericJunctions_chimpipe.txt
21M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/CHIMPIPE
345K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/TRINITY_FUSION_C_hg19/TrinityFusion-C.fusion_predictions.tsv
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/TRINITY_FUSION_C_hg19
9.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/PIZZLY/pizzly_out.json.gz
9.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/PIZZLY
657K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/MAPSPLICE/fusions_well_annotated.txt
689K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/MAPSPLICE
577K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
609K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir
642K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/FUSIONCATCHER_v1.10_June192019
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/JAFFA_ASSEMBLY/jaffa_results.csv
409K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/JAFFA_ASSEMBLY
1.4M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/DEFUSE/results.filtered.tsv
1.4M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/DEFUSE
657K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/ERICSCRIPT/ericscript_outdir/MyEric.results.filtered.tsv
689K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/ERICSCRIPT/ericscript_outdir
722K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/ERICSCRIPT
577K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/STARCHIP_csm10_pGm2_May012019/starchip.summary
609K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/STARCHIP_csm10_pGm2_May012019
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/INFUSION_CF3/infusion_output/fusions.txt
281K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/INFUSION_CF3/infusion_output
314K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/INFUSION_CF3
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/JAFFA_HYBRID/jaffa_results.csv
409K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/JAFFA_HYBRID
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/PRADA/prada_fusions/prada.fus.summary.txt
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/PRADA/prada_fusions
250K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads/PRADA
57M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim3_reads
441K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/JAFFA_DIRECT/jaffa_results.csv
473K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/JAFFA_DIRECT
1.5M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/NFUSE/rna.results.tsv
1.5M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/NFUSE
1.2M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/STARSEQR_STAR-SEQR/STARSEQR_STAR-SEQR_breakpoints.txt
1.2M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/STARSEQR_STAR-SEQR
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/SOAP_FUSE/final_fusion_genes/sample/sample.final.Fusion.specific.for.genes
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/SOAP_FUSE/final_fusion_genes/sample
250K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/SOAP_FUSE/final_fusion_genes
282K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/SOAP_FUSE
313K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/TRINITY_FUSION_UC_hg19/TrinityFusion-UC.fusion_predictions.tsv
345K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/TRINITY_FUSION_UC_hg19
6.2M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/CHIMERASCAN/chimeras.bedpe
6.2M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/CHIMERASCAN
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/TRINITY_FUSION_D_hg19/TrinityFusion-D.fusion_predictions.tsv
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/TRINITY_FUSION_D_hg19
5.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/FUSIONHUNTER/FusionHunter.fusion
5.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/FUSIONHUNTER
1009K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/ARRIBA/fusions.tsv
1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/ARRIBA
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/TOPHAT_FUSION/tophatfusion_out/result.txt
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/TOPHAT_FUSION/tophatfusion_out
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/TOPHAT_FUSION
505K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/STAR_FUSION_v1.5_hg19_Apr042019/star-fusion.fusion_predictions.abridged.tsv
537K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/STAR_FUSION_v1.5_hg19_Apr042019
1.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/FUSION_CATCHER_V0994e/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
1.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/FUSION_CATCHER_V0994e/FusionCatcher_outdir
1.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/FUSION_CATCHER_V0994e
14M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/CHIMPIPE/chimericJunctions_chimpipe.txt
14M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/CHIMPIPE
345K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/TRINITY_FUSION_C_hg19/TrinityFusion-C.fusion_predictions.tsv
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/TRINITY_FUSION_C_hg19
5.6M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/PIZZLY/pizzly_out.json.gz
5.6M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/PIZZLY
633K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/MAPSPLICE/fusions_well_annotated.txt
665K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/MAPSPLICE
569K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
601K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir
634K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/FUSIONCATCHER_v1.10_June192019
345K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/JAFFA_ASSEMBLY/jaffa_results.csv
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/JAFFA_ASSEMBLY
1.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/DEFUSE/results.filtered.tsv
1.4M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/DEFUSE
657K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/ERICSCRIPT/ericscript_outdir/MyEric.results.filtered.tsv
689K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/ERICSCRIPT/ericscript_outdir
722K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/ERICSCRIPT
569K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/STARCHIP_csm10_pGm2_May012019/starchip.summary
601K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/STARCHIP_csm10_pGm2_May012019
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/INFUSION_CF3/infusion_output/fusions.txt
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/INFUSION_CF3/infusion_output
282K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/INFUSION_CF3
345K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/JAFFA_HYBRID/jaffa_results.csv
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/JAFFA_HYBRID
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/PRADA/prada_fusions/prada.fus.summary.txt
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/PRADA/prada_fusions
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads/PRADA
44M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim1_reads
441K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/JAFFA_DIRECT/jaffa_results.csv
473K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/JAFFA_DIRECT
1.5M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/NFUSE/rna.results.tsv
1.5M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/NFUSE
1.2M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/STARSEQR_STAR-SEQR/STARSEQR_STAR-SEQR_breakpoints.txt
1.2M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/STARSEQR_STAR-SEQR
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/SOAP_FUSE/final_fusion_genes/sample/sample.final.Fusion.specific.for.genes
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/SOAP_FUSE/final_fusion_genes/sample
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/SOAP_FUSE/final_fusion_genes
250K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/SOAP_FUSE
345K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/TRINITY_FUSION_UC_hg19/TrinityFusion-UC.fusion_predictions.tsv
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/TRINITY_FUSION_UC_hg19
6.7M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/CHIMERASCAN/chimeras.bedpe
6.8M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/CHIMERASCAN
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/TRINITY_FUSION_D_hg19/TrinityFusion-D.fusion_predictions.tsv
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/TRINITY_FUSION_D_hg19
5.8M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/FUSIONHUNTER/FusionHunter.fusion
5.8M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/FUSIONHUNTER
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1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/ARRIBA
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/TOPHAT_FUSION/tophatfusion_out/result.txt
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/TOPHAT_FUSION/tophatfusion_out
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/TOPHAT_FUSION
505K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/STAR_FUSION_v1.5_hg19_Apr042019/star-fusion.fusion_predictions.abridged.tsv
537K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/STAR_FUSION_v1.5_hg19_Apr042019
1.8M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/FUSION_CATCHER_V0994e/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
1.8M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/FUSION_CATCHER_V0994e/FusionCatcher_outdir
1.8M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/FUSION_CATCHER_V0994e
14M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/CHIMPIPE/chimericJunctions_chimpipe.txt
14M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/CHIMPIPE
345K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/TRINITY_FUSION_C_hg19/TrinityFusion-C.fusion_predictions.tsv
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/TRINITY_FUSION_C_hg19
5.7M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/PIZZLY/pizzly_out.json.gz
5.8M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/PIZZLY
641K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/MAPSPLICE/fusions_well_annotated.txt
673K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/MAPSPLICE
569K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
601K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir
634K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/FUSIONCATCHER_v1.10_June192019
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/JAFFA_ASSEMBLY/jaffa_results.csv
409K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/JAFFA_ASSEMBLY
1.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/DEFUSE/results.filtered.tsv
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730K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/ERICSCRIPT
537K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/STARCHIP_csm10_pGm2_May012019/starchip.summary
569K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/STARCHIP_csm10_pGm2_May012019
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/INFUSION_CF3/infusion_output/fusions.txt
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377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/JAFFA_HYBRID
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/PRADA/prada_fusions/prada.fus.summary.txt
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/PRADA/prada_fusions
250K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads/PRADA
45M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim4_reads
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1.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/NFUSE/rna.results.tsv
1.4M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/NFUSE
1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/STARSEQR_STAR-SEQR/STARSEQR_STAR-SEQR_breakpoints.txt
1.2M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/STARSEQR_STAR-SEQR
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/SOAP_FUSE/final_fusion_genes/sample/sample.final.Fusion.specific.for.genes
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/SOAP_FUSE/final_fusion_genes/sample
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/SOAP_FUSE/final_fusion_genes
250K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/SOAP_FUSE
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/TRINITY_FUSION_UC_hg19/TrinityFusion-UC.fusion_predictions.tsv
281K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/TRINITY_FUSION_UC_hg19
5.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/CHIMERASCAN/chimeras.bedpe
5.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/CHIMERASCAN
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/TRINITY_FUSION_D_hg19/TrinityFusion-D.fusion_predictions.tsv
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/TRINITY_FUSION_D_hg19
5.2M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/FUSIONHUNTER/FusionHunter.fusion
5.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/FUSIONHUNTER
937K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/ARRIBA/fusions.tsv
969K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/ARRIBA
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/TOPHAT_FUSION/tophatfusion_out/result.txt
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/TOPHAT_FUSION/tophatfusion_out
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/TOPHAT_FUSION
441K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/STAR_FUSION_v1.5_hg19_Apr042019/star-fusion.fusion_predictions.abridged.tsv
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1.7M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/FUSION_CATCHER_V0994e/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
1.7M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/FUSION_CATCHER_V0994e/FusionCatcher_outdir
1.7M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/FUSION_CATCHER_V0994e
3.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/CHIMPIPE/chimericJunctions_chimpipe.txt
3.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/CHIMPIPE
313K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/TRINITY_FUSION_C_hg19/TrinityFusion-C.fusion_predictions.tsv
345K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/TRINITY_FUSION_C_hg19
3.8M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/PIZZLY/pizzly_out.json.gz
3.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/PIZZLY
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657K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/MAPSPLICE
537K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
569K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir
602K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/FUSIONCATCHER_v1.10_June192019
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/JAFFA_ASSEMBLY/jaffa_results.csv
409K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/JAFFA_ASSEMBLY
1.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/DEFUSE/results.filtered.tsv
1.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/DEFUSE
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665K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/ERICSCRIPT/ericscript_outdir
698K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/ERICSCRIPT
505K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/STARCHIP_csm10_pGm2_May012019/starchip.summary
537K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/STARCHIP_csm10_pGm2_May012019
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/INFUSION_CF3/infusion_output/fusions.txt
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/INFUSION_CF3/infusion_output
282K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/INFUSION_CF3
345K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/JAFFA_HYBRID/jaffa_results.csv
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/JAFFA_HYBRID
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/PRADA/prada_fusions/prada.fus.summary.txt
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/PRADA/prada_fusions
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads/PRADA
31M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples/sim5_reads
225M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/samples
313K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/metadata/sim_101.truth_set.dat
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/metadata/sim_101.fusion_TPM_values.dat
722K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/metadata
3.8G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/reads/sim5_reads_1.fq.renamed.fq.gz
3.7G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/reads/sim4_reads_2.fq.renamed.fq.gz
3.7G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/reads/sim1_reads_1.fq.renamed.fq.gz
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3.7G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/reads/sim4_reads_1.fq.renamed.fq.gz
3.7G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/reads/sim2_reads_2.fq.renamed.fq.gz
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3.7G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/reads/sim3_reads_1.fq.renamed.fq.gz
37G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101/reads
37G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_101
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913K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/simulated_fusion_transcript_sequences/sim_adipose.fusion_transcripts.fasta.gz
897K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/simulated_fusion_transcript_sequences/sim_heart.fusion_transcripts.fasta.gz
905K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/simulated_fusion_transcript_sequences/sim_testis.fusion_transcripts.fasta.gz
897K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/simulated_fusion_transcript_sequences/sim_colon.fusion_transcripts.fasta.gz
4.5M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/simulated_fusion_transcript_sequences
1.2M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/NFUSE/rna.results.tsv
1.2M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/NFUSE
1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/STARSEQR_STAR-SEQR/STARSEQR_STAR-SEQR_breakpoints.txt
1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/STARSEQR_STAR-SEQR
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/SOAP_FUSE/final_fusion_genes/sample/sample.final.Fusion.specific.for.genes
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/SOAP_FUSE/final_fusion_genes/sample
282K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/SOAP_FUSE/final_fusion_genes
314K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/SOAP_FUSE
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313K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/TRINITY_FUSION_UC_hg19
3.7M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/CHIMERASCAN/chimeras.bedpe
3.7M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/CHIMERASCAN
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/TRINITY_FUSION_D_hg19/TrinityFusion-D.fusion_predictions.tsv
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/TRINITY_FUSION_D_hg19
2.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/FUSIONHUNTER/FusionHunter.fusion
2.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/FUSIONHUNTER
857K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/ARRIBA/fusions.tsv
889K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/ARRIBA
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/TOPHAT_FUSION/tophatfusion_out/result.txt
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/TOPHAT_FUSION/tophatfusion_out
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/TOPHAT_FUSION
441K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/STAR_FUSION_v1.5_hg19_Apr042019/star-fusion.fusion_predictions.abridged.tsv
473K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/STAR_FUSION_v1.5_hg19_Apr042019
1.6M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/FUSION_CATCHER_V0994e/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
1.6M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/FUSION_CATCHER_V0994e/FusionCatcher_outdir
1.7M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/FUSION_CATCHER_V0994e
32M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/CHIMPIPE/chimericJunctions_chimpipe.txt
32M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/CHIMPIPE
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/TRINITY_FUSION_C_hg19/TrinityFusion-C.fusion_predictions.tsv
281K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/TRINITY_FUSION_C_hg19
52M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/PIZZLY/pizzly_out.json.gz
52M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/PIZZLY
601K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/MAPSPLICE/fusions_well_annotated.txt
633K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/MAPSPLICE
409K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
441K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir
474K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/FUSIONCATCHER_v1.10_June192019
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/JAFFA_ASSEMBLY/jaffa_results.csv
281K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/JAFFA_ASSEMBLY
1009K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/DEFUSE/results.filtered.tsv
1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/DEFUSE
577K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/ERICSCRIPT/ericscript_outdir/MyEric.results.filtered.tsv
609K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/ERICSCRIPT/ericscript_outdir
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249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/STARCHIP_csm10_pGm2_May012019/starchip.summary
281K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/STARCHIP_csm10_pGm2_May012019
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/INFUSION_CF3/infusion_output/fusions.txt
281K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/INFUSION_CF3/infusion_output
314K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/INFUSION_CF3
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/PRADA/prada_fusions/prada.fus.summary.txt
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/PRADA/prada_fusions
250K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose/PRADA
99M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_adipose
1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/NFUSE/rna.results.tsv
1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/NFUSE
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1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/STARSEQR_STAR-SEQR
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/SOAP_FUSE/final_fusion_genes/sample/sample.final.Fusion.specific.for.genes
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/SOAP_FUSE/final_fusion_genes/sample
282K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/SOAP_FUSE/final_fusion_genes
314K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/SOAP_FUSE
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/TRINITY_FUSION_UC_hg19/TrinityFusion-UC.fusion_predictions.tsv
281K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/TRINITY_FUSION_UC_hg19
4.0M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/CHIMERASCAN/chimeras.bedpe
4.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/CHIMERASCAN
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185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/TRINITY_FUSION_D_hg19
2.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/FUSIONHUNTER/FusionHunter.fusion
2.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/FUSIONHUNTER
849K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/ARRIBA/fusions.tsv
881K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/ARRIBA
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/TOPHAT_FUSION/tophatfusion_out/result.txt
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/TOPHAT_FUSION/tophatfusion_out
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/TOPHAT_FUSION
473K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/STAR_FUSION_v1.5_hg19_Apr042019/star-fusion.fusion_predictions.abridged.tsv
505K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/STAR_FUSION_v1.5_hg19_Apr042019
1.5M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/FUSION_CATCHER_V0994e/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
1.5M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/FUSION_CATCHER_V0994e/FusionCatcher_outdir
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22M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/CHIMPIPE/chimericJunctions_chimpipe.txt
22M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/CHIMPIPE
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/TRINITY_FUSION_C_hg19/TrinityFusion-C.fusion_predictions.tsv
281K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/TRINITY_FUSION_C_hg19
30M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/PIZZLY/pizzly_out.json.gz
30M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/PIZZLY
593K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/MAPSPLICE/fusions_well_annotated.txt
625K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/MAPSPLICE
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
409K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir
442K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/FUSIONCATCHER_v1.10_June192019
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/JAFFA_ASSEMBLY/jaffa_results.csv
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/JAFFA_ASSEMBLY
889K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/DEFUSE/results.filtered.tsv
921K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/DEFUSE
577K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/ERICSCRIPT/ericscript_outdir/MyEric.results.filtered.tsv
609K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/ERICSCRIPT/ericscript_outdir
642K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/ERICSCRIPT
281K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/STARCHIP_csm10_pGm2_May012019/starchip.summary
313K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/STARCHIP_csm10_pGm2_May012019
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/INFUSION_CF3/infusion_output/fusions.txt
281K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/INFUSION_CF3/infusion_output
314K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/INFUSION_CF3
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/PRADA/prada_fusions/prada.fus.summary.txt
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/PRADA/prada_fusions
250K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain/PRADA
67M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_brain
1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/NFUSE/rna.results.tsv
1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/NFUSE
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1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/STARSEQR_STAR-SEQR
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/SOAP_FUSE/final_fusion_genes/sample/sample.final.Fusion.specific.for.genes
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/SOAP_FUSE/final_fusion_genes/sample
250K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/SOAP_FUSE/final_fusion_genes
282K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/SOAP_FUSE
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/TRINITY_FUSION_UC_hg19/TrinityFusion-UC.fusion_predictions.tsv
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/TRINITY_FUSION_UC_hg19
3.5M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/CHIMERASCAN/chimeras.bedpe
3.6M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/CHIMERASCAN
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/TRINITY_FUSION_D_hg19/TrinityFusion-D.fusion_predictions.tsv
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/TRINITY_FUSION_D_hg19
1.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/FUSIONHUNTER/FusionHunter.fusion
1.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/FUSIONHUNTER
777K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/ARRIBA/fusions.tsv
809K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/ARRIBA
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/TOPHAT_FUSION/tophatfusion_out/result.txt
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/TOPHAT_FUSION/tophatfusion_out
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/TOPHAT_FUSION
409K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/STAR_FUSION_v1.5_hg19_Apr042019/star-fusion.fusion_predictions.abridged.tsv
441K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/STAR_FUSION_v1.5_hg19_Apr042019
1.2M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/FUSION_CATCHER_V0994e/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
1.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/FUSION_CATCHER_V0994e/FusionCatcher_outdir
1.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/FUSION_CATCHER_V0994e
28M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/CHIMPIPE/chimericJunctions_chimpipe.txt
28M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/CHIMPIPE
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/TRINITY_FUSION_C_hg19/TrinityFusion-C.fusion_predictions.tsv
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/TRINITY_FUSION_C_hg19
48M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/PIZZLY/pizzly_out.json.gz
48M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/PIZZLY
593K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/MAPSPLICE/fusions_well_annotated.txt
625K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/MAPSPLICE
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
409K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir
442K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/FUSIONCATCHER_v1.10_June192019
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/JAFFA_ASSEMBLY/jaffa_results.csv
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/JAFFA_ASSEMBLY
897K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/DEFUSE/results.filtered.tsv
929K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/DEFUSE
577K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/ERICSCRIPT/ericscript_outdir/MyEric.results.filtered.tsv
609K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/ERICSCRIPT/ericscript_outdir
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249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/STARCHIP_csm10_pGm2_May012019/starchip.summary
281K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/STARCHIP_csm10_pGm2_May012019
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/INFUSION_CF3/infusion_output/fusions.txt
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/INFUSION_CF3/infusion_output
282K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/INFUSION_CF3
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/PRADA/prada_fusions/prada.fus.summary.txt
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon/PRADA/prada_fusions
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91M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_colon
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185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/SOAP_FUSE/final_fusion_genes/sample/sample.final.Fusion.specific.for.genes
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/SOAP_FUSE/final_fusion_genes/sample
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282K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/SOAP_FUSE
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/TRINITY_FUSION_UC_hg19/TrinityFusion-UC.fusion_predictions.tsv
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/TRINITY_FUSION_UC_hg19
4.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/CHIMERASCAN/chimeras.bedpe
4.4M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/CHIMERASCAN
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185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/TRINITY_FUSION_D_hg19
2.0M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/FUSIONHUNTER/FusionHunter.fusion
2.0M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/FUSIONHUNTER
729K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/ARRIBA/fusions.tsv
761K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/ARRIBA
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/TOPHAT_FUSION/tophatfusion_out/result.txt
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/TOPHAT_FUSION/tophatfusion_out
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/TOPHAT_FUSION
409K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/STAR_FUSION_v1.5_hg19_Apr042019/star-fusion.fusion_predictions.abridged.tsv
441K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/STAR_FUSION_v1.5_hg19_Apr042019
1.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/FUSION_CATCHER_V0994e/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
1.3M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/FUSION_CATCHER_V0994e/FusionCatcher_outdir
1.4M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/FUSION_CATCHER_V0994e
18M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/CHIMPIPE/chimericJunctions_chimpipe.txt
18M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/CHIMPIPE
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/TRINITY_FUSION_C_hg19/TrinityFusion-C.fusion_predictions.tsv
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/TRINITY_FUSION_C_hg19
21M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/PIZZLY/pizzly_out.json.gz
21M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/PIZZLY
585K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/MAPSPLICE/fusions_well_annotated.txt
617K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/MAPSPLICE
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
409K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir
442K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/FUSIONCATCHER_v1.10_June192019
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/JAFFA_ASSEMBLY/jaffa_results.csv
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/JAFFA_ASSEMBLY
761K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/DEFUSE/results.filtered.tsv
793K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/DEFUSE
577K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/ERICSCRIPT/ericscript_outdir/MyEric.results.filtered.tsv
609K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/ERICSCRIPT/ericscript_outdir
642K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/ERICSCRIPT
281K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/STARCHIP_csm10_pGm2_May012019/starchip.summary
313K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/STARCHIP_csm10_pGm2_May012019
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/INFUSION_CF3/infusion_output/fusions.txt
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/INFUSION_CF3/infusion_output
282K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/INFUSION_CF3
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/PRADA/prada_fusions/prada.fus.summary.txt
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/PRADA/prada_fusions
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart/PRADA
54M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_heart
1.1M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/NFUSE/rna.results.tsv
1.2M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/NFUSE
985K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/STARSEQR_STAR-SEQR/STARSEQR_STAR-SEQR_breakpoints.txt
1017K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/STARSEQR_STAR-SEQR
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/SOAP_FUSE/final_fusion_genes/sample/sample.final.Fusion.specific.for.genes
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/SOAP_FUSE/final_fusion_genes/sample
250K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/SOAP_FUSE/final_fusion_genes
282K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/SOAP_FUSE
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/TRINITY_FUSION_UC_hg19/TrinityFusion-UC.fusion_predictions.tsv
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/TRINITY_FUSION_UC_hg19
3.5M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/CHIMERASCAN/chimeras.bedpe
3.6M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/CHIMERASCAN
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/TRINITY_FUSION_D_hg19/TrinityFusion-D.fusion_predictions.tsv
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/TRINITY_FUSION_D_hg19
1.9M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/FUSIONHUNTER/FusionHunter.fusion
2.0M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/FUSIONHUNTER
801K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/ARRIBA/fusions.tsv
833K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/ARRIBA
153K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/TOPHAT_FUSION/tophatfusion_out/result.txt
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/TOPHAT_FUSION/tophatfusion_out
218K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/TOPHAT_FUSION
409K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/STAR_FUSION_v1.5_hg19_Apr042019/star-fusion.fusion_predictions.abridged.tsv
441K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/STAR_FUSION_v1.5_hg19_Apr042019
1.5M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/FUSION_CATCHER_V0994e/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
1.5M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/FUSION_CATCHER_V0994e/FusionCatcher_outdir
1.5M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/FUSION_CATCHER_V0994e
27M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/CHIMPIPE/chimericJunctions_chimpipe.txt
27M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/CHIMPIPE
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/TRINITY_FUSION_C_hg19/TrinityFusion-C.fusion_predictions.tsv
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/TRINITY_FUSION_C_hg19
34M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/PIZZLY/pizzly_out.json.gz
34M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/PIZZLY
593K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/MAPSPLICE/fusions_well_annotated.txt
625K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/MAPSPLICE
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir/final-list_candidate-fusion-genes.txt
409K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/FUSIONCATCHER_v1.10_June192019/FusionCatcher_outdir
442K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/FUSIONCATCHER_v1.10_June192019
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/JAFFA_ASSEMBLY/jaffa_results.csv
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/JAFFA_ASSEMBLY
921K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/DEFUSE/results.filtered.tsv
953K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/DEFUSE
577K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/ERICSCRIPT/ericscript_outdir/MyEric.results.filtered.tsv
609K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/ERICSCRIPT/ericscript_outdir
642K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/ERICSCRIPT
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/STARCHIP_csm10_pGm2_May012019/starchip.summary
281K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/STARCHIP_csm10_pGm2_May012019
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/INFUSION_CF3/infusion_output/fusions.txt
249K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/INFUSION_CF3/infusion_output
282K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/INFUSION_CF3
185K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/PRADA/prada_fusions/prada.fus.summary.txt
217K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/PRADA/prada_fusions
250K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis/PRADA
75M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples/sim_testis
384M	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/samples
377K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/metadata/sim_50.fusion_TPM_values.dat
313K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/metadata/sim_50.truth_set.dat
722K	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/metadata
1.5G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/reads/sim_heart_1.fq.gz
1.5G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/reads/sim_colon_1.fq.gz
1.6G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/reads/sim_brain_1.fq.gz
1.5G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/reads/sim_adipose_1.fq.gz
1.5G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/reads/sim_testis_1.fq.gz
1.5G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/reads/sim_adipose_2.fq.gz
1.5G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/reads/sim_heart_2.fq.gz
1.5G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/reads/sim_colon_2.fq.gz
1.6G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/reads/sim_brain_2.fq.gz
1.5G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/reads/sim_testis_2.fq.gz
15G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50/reads
15G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data/sim_50
52G	./CTAT_FUSIONTRANS_BENCHMARKING/on_simulated_data
84G	./CTAT_FUSIONTRANS_BENCHMARKING
3.2G	./TRINITY_SINGULARITY/trinityrnaseq.v2.15.1.simg
57K	./TRINITY_SINGULARITY/trinityrnaseq.v2.15.1.simg.md5sum
3.2G	./TRINITY_SINGULARITY
476M	./CTAT-LR-Fusion_PAPER/SeraCareFusionMixV4/SeraCareFusionV4-TruSeq/MDL_163_SeraSeqFusion_1.bam.left.fastq.gz
731M	./CTAT-LR-Fusion_PAPER/SeraCareFusionMixV4/SeraCareFusionV4-TruSeq/MDL_163_SeraSeqFusion_3.bam.left.fastq.gz
503M	./CTAT-LR-Fusion_PAPER/SeraCareFusionMixV4/SeraCareFusionV4-TruSeq/MDL_163_SeraSeqFusion_1.bam.right.fastq.gz
798M	./CTAT-LR-Fusion_PAPER/SeraCareFusionMixV4/SeraCareFusionV4-TruSeq/MDL_163_SeraSeqFusion_2.bam.right.fastq.gz
754M	./CTAT-LR-Fusion_PAPER/SeraCareFusionMixV4/SeraCareFusionV4-TruSeq/MDL_163_SeraSeqFusion_2.bam.left.fastq.gz
784M	./CTAT-LR-Fusion_PAPER/SeraCareFusionMixV4/SeraCareFusionV4-TruSeq/MDL_163_SeraSeqFusion_3.bam.right.fastq.gz
4.0G	./CTAT-LR-Fusion_PAPER/SeraCareFusionMixV4/SeraCareFusionV4-TruSeq
5.7G	./CTAT-LR-Fusion_PAPER/SeraCareFusionMixV4/SeraCareFusionV4-MAS-ISO-seq/R3-SeraCareV4Fusion-MAS-ISO-seq-bulk8mer.fastq.gz
5.8G	./CTAT-LR-Fusion_PAPER/SeraCareFusionMixV4/SeraCareFusionV4-MAS-ISO-seq/R2-SeraCareV4Fusion-MAS-ISO-seq-bulk8mer.fastq.gz
3.6G	./CTAT-LR-Fusion_PAPER/SeraCareFusionMixV4/SeraCareFusionV4-MAS-ISO-seq/R1-SeraCareV4Fusion-MAS-ISO-seq-monomer.fastq.gz
15G	./CTAT-LR-Fusion_PAPER/SeraCareFusionMixV4/SeraCareFusionV4-MAS-ISO-seq
19G	./CTAT-LR-Fusion_PAPER/SeraCareFusionMixV4
1.2G	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PBSIM3_PacBio_n_ONT_simulated_fusion_reads.Feb2024.tar.gz
7.6M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov5_pass10_sample1.fastq.gz
82M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov50_pass5_sample5.fastq.gz
37M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov50_pass20_sample1.fastq.gz
8.4M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov5_pass5_sample5.fastq.gz
57K	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/README.md
73M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov50_pass10_sample2.fastq.gz
3.7M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov5_pass20_sample3.fastq.gz
82M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov50_pass5_sample4.fastq.gz
36M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov50_pass20_sample2.fastq.gz
3.8M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov5_pass20_sample1.fastq.gz
8.4M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov5_pass5_sample4.fastq.gz
70M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov50_pass10_sample5.fastq.gz
8.7M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov5_pass5_sample3.fastq.gz
35M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov50_pass20_sample5.fastq.gz
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3.6M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov5_pass20_sample4.fastq.gz
36M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov50_pass20_sample3.fastq.gz
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7.3M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov5_pass10_sample3.fastq.gz
84M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov50_pass5_sample3.fastq.gz
7.2M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov5_pass10_sample5.fastq.gz
86M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov50_pass5_sample2.fastq.gz
7.5M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov5_pass10_sample2.fastq.gz
3.6M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov5_pass20_sample5.fastq.gz
1.5M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/pbsim3_wreps.truthset.rep1.TSV
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72M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov50_pass10_sample3.fastq.gz
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35M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov50_pass20_sample4.fastq.gz
70M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3/PBSIM3.rep1_cov50_pass10_sample4.fastq.gz
1.1G	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/PacBio_pbsim3
24M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/ONT_pbsim3/ONT.PBSIM3.rep1_cov50_pass1_sample2.fastq.gz
57K	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/ONT_pbsim3/README.md
23M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/ONT_pbsim3/ONT.PBSIM3.rep1_cov50_pass1_sample3.fastq.gz
2.7M	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/ONT_pbsim3/ONT.PBSIM3.rep1_cov5_pass1_sample3.fastq.gz
737K	./CTAT-LR-Fusion_PAPER/simulated_reads/pbsim3/ONT_pbsim3/ont_fusion_brkpt_truth_set.tsv
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