IGV 2.3, released April 2013

New Features and Improvements

Bug Fixes

IGV 2.3.2  April 22, 2013

Bug Fixes

IGV 2.3.3  May 1, 2013

Bug Fixes

IGV 2.3.4  May 13, 2013

Bug Fixes

IGV 2.3.6  May  2013

Bug Fixes

IGV 2.3.7  May 30, 2013

Bug Fixes

IGV 2.3.8  May 31, 2013

Bug Fixes

IGV 2.3.10  July 7, 2013

New features and Improvements
  • Display message when BEDTools plugin encounters an error
  • Show genomic location in tooltip of alignment tracks
  • Sashimi plot for RNA-Seq alignments
  • Option to override user preferences via a batch comman>
  • Option to direct igvtools output to stdout for count and sort commands, using the special string 'stdout' as the output file.
Bug Fixes
  • igvtools outputs incorrect wig files (multiple track lines)
  • SVG files are not readable by some programs (e.g. gimp) on Windows platform due to incorrect encoding.

IGV 2.3.12  July 15, 2013

Bug Fixes

IGV 2.3.13 August 2, 2013

Bug Fixes

IGV 2.3.14 August 6, 2013

Bug Fixes
  • Loading bedgraph files fail with "array index out of bounds" error

IGV 2.3.15 August 19, 2013

Bug Fixes
  • Show read sequence of unmapped mates 
  • Exons not associated with transcripts in GTF files
  • Splice junction tooltip incomplete in collapsed mode

 

IGV 2.3.16 August 20, 2013

IGV 2.3.17 August 26, 2013

IGV 2.3.18 September 5, 2013

Bug Fixes

  • Autoscale option is reset after navigating to new locus
  • Reference sequence track is not shown from session files if there is no assoicated annotation track

IGV 2.3.19 September 27, 2013

Bug Fixes

  • Popup messages appear when running batch scripts from the command line
  • Starting from the command line with a session file fails if no genome was previously selected
  • IGV hangs when viewing soft-clipped alignments at coordinates < 0  (5' end of contig)
  • Not all exons are displayed from Wormbase GFF files

IGV 2.3.23 October 24, 2013

New Features and Improvements

  • Add preference to control display of default sample/track attributes
  • Performance improvements for loading BAM files over the web
  • Development version only: Remove tracks via delete or backspace key
  • Allow multiple motifs to be entered at once in MotifFinder
  • Allow grouping of VCF tracks

Bug Fixes

  • Starting igv with the -g option causes a null pointer exception when genome is in current directory
  • Cannot read BAM files when server doesn't return Content-Length
  • Cannot read eQTL files with missing q-value

IGV 2.3.26 January 17, 2014

New Features and Improvements

Bug Fixes

IGV 2.3.46 March 16, 2015

New Features and Improvements

By default, the BLAT server hosted at the UCSC Genome Browser is used, but this can be changed in the Advanced preferences (View > Preferences > Advanced). Most UCSC derived genomes are supported, including human and mouse genomes.

 

IGV 2.3.47 March 26, 2015

New Features and Improvements

Bug Fixes

IGV 2.3.49 April 10, 2015

Bug Fixes

IGV 2.3.50 April 15, 2015

New Features and Improvements

Bug Fixes

IGV 2.3.51 April 20, 2015

Bug Fixes

IGV 2.3.52 April 20, 2015

Bug Fixes

IGV 2.3.53 May 26, 2015

Bug Fixes

New Features and Improvements

IGV 2.3.55 May 28, 2015

Bug Fixes

IGV 2.3.56 June 19 , 2015

New Features and Improvements

IGV 2.3.57 June 19 , 2015

Bug Fixes

IGV 2.3.58 August 4, 2015

New Features and Improvements

IGV 2.3.59 August 7 , 2015

Bug Fixes

New Features and Improvements

IGV 2.3.60 September 21 , 2015

Bug Fixes

New Features and Improvements

IGV 2.3.61 October 20 , 2015

Bug Fixes

IGV 2.3.67 November 27 , 2015

Bug Fixes

New Features and Improvements

IGV 2.3.68 January 13, 2016

New Features and Improvements