/*
 * The MIT License (MIT)
 *
 * Copyright (c) 2007-2015 Broad Institute
 *
 * Permission is hereby granted, free of charge, to any person obtaining a copy
 * of this software and associated documentation files (the "Software"), to deal
 * in the Software without restriction, including without limitation the rights
 * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 * copies of the Software, and to permit persons to whom the Software is
 * furnished to do so, subject to the following conditions:
 *
 * The above copyright notice and this permission notice shall be included in
 * all copies or substantial portions of the Software.
 *
 *
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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 * THE SOFTWARE.
 */

package org.broad.igv.lists;

import java.util.List;

/**
 * An experimental class to represent a list of variants, and associated samples.
 *
 * @author jrobinso
 * @date Apr 27, 2011
 */
public class VariantListEntry {

    String name;
    String listLabel;
    String chr;
    int position;   // <= 1-based
    String[] samples;

    public VariantListEntry(String chr, int position, String[] samples) {
        this.chr = chr;
        this.position = position;
        this.samples = samples;
        this.name = chr + ":" + position;

        StringBuffer buf = new StringBuffer();
        buf.append(name);
        buf.append(" ");
        boolean first = true;
        for (String s : samples) {
            if (!first) buf.append(",");
            buf.append(s);
            first = false;
        }
        listLabel = buf.toString();
    }

    public String toString() {
        return listLabel;
    }
}
