/*
 * The MIT License (MIT)
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 * Copyright (c) 2007-2015 Broad Institute
 *
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 * of this software and associated documentation files (the "Software"), to deal
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 * copies of the Software, and to permit persons to whom the Software is
 * furnished to do so, subject to the following conditions:
 *
 * The above copyright notice and this permission notice shall be included in
 * all copies or substantial portions of the Software.
 *
 *
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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package org.broad.igv.data.cufflinks;

import org.broad.igv.track.WindowFunction;

/**
 * Represents a value from a cufflinks file for a single sample
 * @see FPKMValue
 * @author jrobinso, jacob
 */
public class FPKMSampleValue extends CufflinksValue{

    float fpkm;
    float fpkmLo;
    float fpkmHi;

    public FPKMSampleValue(String chr, int start, int end, String gene, float fpkm, float fpkmLo, float fpkmHi) {
        super(chr, start, end, gene);
        this.fpkm = fpkm;
        this.fpkmLo = fpkmLo;
        this.fpkmHi = fpkmHi;
    }

    @Override
    public float getScore() {
        return fpkm;
    }

    @Override
    public String getValueString(double position, WindowFunction windowFunction) {

        StringBuilder sb = new StringBuilder();
        sb.append(getChr() + ":" + (getStart() + 1) + "-" + getEnd());
        sb.append("<br>Gene = " + gene);
        sb.append("<br>FPKM = " + fpkm);
        sb.append("<br>FPKM_LO = " + fpkmLo);
        sb.append("<br>FPKM_HI = " + fpkmHi);
        return sb.toString();
    }

}
