/*
 * Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard.  All Rights Reserved.
 *
 * This software is licensed under the terms of the GNU Lesser General Public License (LGPL),
 * Version 2.1 which is available at http://www.opensource.org/licenses/lgpl-2.1.php.
 *
 * THE SOFTWARE IS PROVIDED "AS IS." THE BROAD AND MIT MAKE NO REPRESENTATIONS OR
 * WARRANTES OF ANY KIND CONCERNING THE SOFTWARE, EXPRESS OR IMPLIED, INCLUDING,
 * WITHOUT LIMITATION, WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR
 * PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS, WHETHER
 * OR NOT DISCOVERABLE.  IN NO EVENT SHALL THE BROAD OR MIT, OR THEIR RESPECTIVE
 * TRUSTEES, DIRECTORS, OFFICERS, EMPLOYEES, AND AFFILIATES BE LIABLE FOR ANY DAMAGES
 * OF ANY KIND, INCLUDING, WITHOUT LIMITATION, INCIDENTAL OR CONSEQUENTIAL DAMAGES,
 * ECONOMIC DAMAGES OR INJURY TO PROPERTY AND LOST PROFITS, REGARDLESS OF WHETHER
 * THE BROAD OR MIT SHALL BE ADVISED, SHALL HAVE OTHER REASON TO KNOW, OR IN FACT
 * SHALL KNOW OF THE POSSIBILITY OF THE FOREGOING.
 */

/*
 * To change this template, choose Tools | Templates
 * and open the template in the editor.
 */
package org.broad.igv.data;

import org.broad.igv.feature.LocusScore;
import org.broad.igv.track.WindowFunction;

/**
 * @author jrobinso
 */
public class SummaryScore implements LocusScore {

    int start;
    int end;
    float value;

    public SummaryScore(int start, int end, float value) {
        this.start = start;
        this.end = end;
        this.value = value;
    }

    public SummaryScore(LocusScore anotherScore) {
        this.start = anotherScore.getStart();
        this.end = anotherScore.getEnd();
        this.value = anotherScore.getScore();
    }

    public SummaryScore copy() {
        return new SummaryScore(this);
    }

    public void setStart(int start) {
        this.start = start;
    }

    public String getChr() {
        return null;  //To change body of implemented methods use File | Settings | File Templates.
    }
    @Override
    public String getContig() {
        return null;
    }

    public int getStart() {
        return start;
    }

    public int getEnd() {
        return end;
    }

    public void setEnd(int end) {
        this.end = end;
    }

    public float getValue() {
        return value;
    }

    public void setScore(float score) {
        this.value = score;
    }

    public float getScore() {
        return value;
    }

    public String getValueString(double position, WindowFunction wf) {
        return "Value:  " + getScore() + (wf == null ? "" : " (" + wf.toString() + ")");
    }

}
